Citrus Sinensis ID: 007165
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 615 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZV7 | 612 | Probable methyltransferas | yes | no | 0.978 | 0.983 | 0.752 | 0.0 | |
| Q8H118 | 611 | Probable methyltransferas | no | no | 0.869 | 0.875 | 0.664 | 0.0 | |
| Q93YV7 | 608 | Probable methyltransferas | no | no | 0.853 | 0.863 | 0.664 | 0.0 | |
| Q940J9 | 623 | Probable methyltransferas | no | no | 0.972 | 0.959 | 0.621 | 0.0 | |
| Q9LZA4 | 600 | Probable methyltransferas | no | no | 0.840 | 0.861 | 0.462 | 1e-138 | |
| Q84TJ0 | 591 | Probable methyltransferas | no | no | 0.842 | 0.876 | 0.465 | 1e-137 | |
| O22285 | 694 | Probable methyltransferas | no | no | 0.904 | 0.801 | 0.445 | 1e-137 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.827 | 0.746 | 0.448 | 1e-136 | |
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.832 | 0.781 | 0.44 | 1e-132 | |
| Q9C884 | 639 | Probable methyltransferas | no | no | 0.817 | 0.787 | 0.447 | 1e-129 |
| >sp|Q8VZV7|PMT9_ARATH Probable methyltransferase PMT9 OS=Arabidopsis thaliana GN=At5g14430 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/610 (75%), Positives = 522/610 (85%), Gaps = 8/610 (1%)
Query: 1 MKQKSEQQIR-TSKQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVLG 59
MK +++R T K TYVL+G I++LGL CLYYGS+ APG R+SD+ FDGS+ +
Sbjct: 1 MKHFRTERVRATPKLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDE----FDGSNNRVR 56
Query: 60 T-FGRNRDFDDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHY 118
T G R+ D + EVPKS+PICD R+SELIPCLDRNL YQLKLK NLSLMEHY
Sbjct: 57 TGIGSLRNRDIVLAVSRF--EVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHY 114
Query: 119 ERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEK 178
E HCPP ERR+NCLVPPP GYKIP+RWP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+K
Sbjct: 115 EHHCPPSERRFNCLVPPPVGYKIPLRWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDK 174
Query: 179 INFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDI 238
INFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDI
Sbjct: 175 INFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDI 234
Query: 239 IAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 298
IAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI
Sbjct: 235 IAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 294
Query: 299 LLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 358
LLLELDRLLRPGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ+VIW KP
Sbjct: 295 LLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKP 354
Query: 359 ISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTA 418
ISNSCYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVPWP RLTA
Sbjct: 355 ISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVPWPRRLTA 414
Query: 419 PPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK 478
PPPRLEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLGGFAAAL
Sbjct: 415 PPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALN 474
Query: 479 DKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 538
DKDVWVMNV PV+ S R+KIIYDRGLIG HDWCE+F TYPRT+DL+HAW F+E + RG
Sbjct: 475 DKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTFTETQARG 534
Query: 539 CSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEE 598
CSFEDLLIEMDR+LRPEGFVIIRD + I+YI+K++T LKWD W +E P+ D LS+ +E
Sbjct: 535 CSFEDLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPKGDPLSTKDE 594
Query: 599 RVLIAKKKLW 608
VLIA+KKLW
Sbjct: 595 IVLIARKKLW 604
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8H118|PMT1_ARATH Probable methyltransferase PMT1 OS=Arabidopsis thaliana GN=At3g23300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/537 (66%), Positives = 431/537 (80%), Gaps = 2/537 (0%)
Query: 72 EDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNC 131
ED N P+S P+CD R+SELIPCLDRNLIYQ++LK +LSLMEHYERHCPPPERR+NC
Sbjct: 67 EDVVGNGFTPRSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNC 126
Query: 132 LVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDG 191
L+PPP GYKIP++WP SRDEVWK NIPHTHLA EKSDQ+WMVV GEKINFPGGGTHFH G
Sbjct: 127 LIPPPPGYKIPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGEKINFPGGGTHFHYG 186
Query: 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHEN 251
ADKYI ++A ML FP++ LNNGG +R LDVGCGVASFG YLL+ +I+ MSLAPNDVH+N
Sbjct: 187 ADKYIASMANMLNFPNNVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQN 246
Query: 252 QIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG 311
QIQFALERGIP+ LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDR+LRPGG
Sbjct: 247 QIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGG 306
Query: 312 YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGS 371
YF YSSPEAYA D E+ RIW M L+ MCW I +K++QTVIW KP++N CYL R PG+
Sbjct: 307 YFAYSSPEAYAQDEEDLRIWREMSALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGREPGT 366
Query: 372 RPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTE 431
+PPLC+SD DPD + V M+ACI+ YS H KG+GL PWPARLT+PPPRL + G +T+
Sbjct: 367 QPPLCNSDSDPDAVYGVNMEACITQYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTD 426
Query: 432 EFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVR 491
F +D W+ RV YW + Q +T RN+MDM +++G FAAALK+KDVWVMNV P
Sbjct: 427 IFEKDTETWRQRVDTYWDLLSPKIQSDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPED 486
Query: 492 MSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRM 551
LK+IYDRGL+G VH WCE+FSTYPRTYDLLHAW + S+I++RGCS EDLL+EMDR+
Sbjct: 487 GPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKRGCSAEDLLLEMDRI 546
Query: 552 LRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 608
LRP GF++IRDK S+++ ++K++ AL W+ E + ++ S+ +LI +KKLW
Sbjct: 547 LRPSGFILIRDKQSVVDLVKKYLKALHWEA--VETKTASESDQDSDNVILIVQKKLW 601
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/531 (66%), Positives = 431/531 (81%), Gaps = 6/531 (1%)
Query: 80 VPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGY 139
P+S P+CD R+SELIPCLDRNLIYQ++LK +LSLMEHYERHCPPPERR+NCL+PPP GY
Sbjct: 72 TPRSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGY 131
Query: 140 KIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILAL 199
K+P++WP SRDEVWK NIPHTHLA EKSDQ+WMVV G+KINFPGGGTHFH GADKYI ++
Sbjct: 132 KVPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKYIASM 191
Query: 200 ARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER 259
A ML +P++ LNNGG +R V DVGCGVASFG YLLS DI+ MSLAPNDVH+NQIQFALER
Sbjct: 192 ANMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALER 251
Query: 260 GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319
GIP++LGVLGTKRLPYPSRSFEL+HCSRCRIDWLQRDGILLLELDR+LRPGGYF YSSPE
Sbjct: 252 GIPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPE 311
Query: 320 AYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSD 379
AYA D E+ RIW M L++ MCWKI +K++QTVIW KP++N CYL+R PG++PPLC SD
Sbjct: 312 AYAQDEEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCRSD 371
Query: 380 DDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGI 439
+DPD W V M+ACI+ YS H KG+GL PWPARLT+PPPRL + G +T F +D +
Sbjct: 372 NDPDAVWGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTGMFEKDTEL 431
Query: 440 WQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKII 499
W+ RV YW + + +T RN+MDM +++G FAAALK+KDVWVMNV P LK+I
Sbjct: 432 WRQRVDTYWDLLSPRIESDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLI 491
Query: 500 YDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVI 559
YDRGL+G VH WCE+FSTYPRTYDLLHAW + S+I+++GCS DLL+EMDR+LRP GF+I
Sbjct: 492 YDRGLMGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKKGCSEVDLLLEMDRILRPSGFII 551
Query: 560 IRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEER--VLIAKKKLW 608
IRDK ++++++K++ AL W+ EV + D+ S + V I +KKLW
Sbjct: 552 IRDKQRVVDFVKKYLKALHWE----EVGTKTDSDSDQDSDNVVFIVQKKLW 598
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q940J9|PMT8_ARATH Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/610 (62%), Positives = 457/610 (74%), Gaps = 12/610 (1%)
Query: 10 RTSKQLTYVLLGLISVLGL-VC---LYYGSTSAPGLRRSDDESSGFDGSDPVLGTFGRNR 65
R+ L L+ + V+ L VC +YYGS+S S GS + G N
Sbjct: 5 RSDGGLKKRLIASVCVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLSGD-DDNG 63
Query: 66 DF--DDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCP 123
D DD + E + V KS P+CD R+SE+IPCLDRN IYQ++LK +LSLMEHYERHCP
Sbjct: 64 DTKQDDSVANAEDSLVVAKSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYERHCP 123
Query: 124 PPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPG 183
PPERR+NCL+PPP GYK+P++WP SRDEVWKANIPHTHLA+EKSDQ+WMV GEKI+FPG
Sbjct: 124 PPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKISFPG 183
Query: 184 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSL 243
GGTHFH GADKYI ++A ML F +D LN+ G +R VLDVGCGVASFGAYLL+ DI+ MSL
Sbjct: 184 GGTHFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSL 243
Query: 244 APNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLEL 303
APNDVH+NQIQFALERGIP+ LGVLGTKRLPYPSRSFE AHCSRCRIDWLQRDG+LLLEL
Sbjct: 244 APNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLEL 303
Query: 304 DRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSC 363
DR+LRPGGYF YSSPEAYA D EN +IW M L++ MCW+I K++QTV+W KP+SN C
Sbjct: 304 DRVLRPGGYFAYSSPEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPLSNDC 363
Query: 364 YLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRL 423
YL+R PG++PPLC SD DPD V M+ACI+PYS H KG+GL PWPARLT+ PPRL
Sbjct: 364 YLEREPGTQPPLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSSPPRL 423
Query: 424 EEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVW 483
+ G +T+ F +D +W+ +V YW M + + NT RN+MDM +++G FAAALKDKDVW
Sbjct: 424 ADFGYSTDMFEKDTELWKQQVDSYWNLMSSKVKSNTVRNIMDMKAHMGSFAAALKDKDVW 483
Query: 484 VMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFED 543
VMNV LK+IYDRGLIGT H+WCE+FSTYPRTYDLLHAW +FS+I+ +GCS ED
Sbjct: 484 VMNVVSPDGPNTLKLIYDRGLIGTNHNWCEAFSTYPRTYDLLHAWSIFSDIKSKGCSAED 543
Query: 544 LLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSE---VEPRIDALSSSEER- 599
LLIEMDR+LRP GFVIIRDK S++ I+K++ AL W+ SE +D S E
Sbjct: 544 LLIEMDRILRPTGFVIIRDKQSVVESIKKYLQALHWETVASEKVNTSSELDQDSEDGENN 603
Query: 600 -VLIAKKKLW 608
V I +KKLW
Sbjct: 604 VVFIVQKKLW 613
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LZA4|PMT7_ARATH Probable methyltransferase PMT7 OS=Arabidopsis thaliana GN=At5g04060 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 494 bits (1271), Expect = e-138, Method: Compositional matrix adjust.
Identities = 246/532 (46%), Positives = 334/532 (62%), Gaps = 15/532 (2%)
Query: 80 VPKS-IPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKG 138
+P+S + +C ++++E IPC + + QL NLS E ERHCPP E+R CLVPPPK
Sbjct: 78 IPESGVNVCPLKFNEYIPCHNVTYVQQLLPSLNLSRREELERHCPPLEQRLFCLVPPPKD 137
Query: 139 YKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILA 198
YKIP+RWP SRD VW++N+ HTHLAE K Q+W+ G+ FPGGGTHF GA +YI
Sbjct: 138 YKIPIRWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEQGQLWWFPGGGTHFKHGAPEYIQR 197
Query: 199 LARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE 258
L M + L + G + VLDVGCGVASF AYLL I MS AP D HENQIQFALE
Sbjct: 198 LGNMTTNETGDLLSAG-VEQVLDVGCGVASFAAYLLPLGIKTMSFAPKDGHENQIQFALE 256
Query: 259 RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318
RGI + + + TK++PYP+ SF++ HCSRCR+DW + DG+L+ E++RLLRP GYFVYS+P
Sbjct: 257 RGIRAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLMKEVNRLLRPNGYFVYSAP 316
Query: 319 EAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSS 378
AY D + IW+ + +L +MCWK++S+K QT IW K +C K +C
Sbjct: 317 PAYRKDKDFPVIWDKLVNLTSAMCWKLISRKVQTAIWVKEDDEACLRKNAELELITICGV 376
Query: 379 DDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIG 438
+D +W V ++ C+ ++ +K + L RL++ P L E G++ +EF D
Sbjct: 377 EDVSKASWKVPLRDCVD--ISENRQQKPSSLTD---RLSSYPTSLREKGISEDEFTLDTN 431
Query: 439 IWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI 498
W+ +V YW+ M K RNVMD N+ +GGFAAA+ +WVMNV P M+ L
Sbjct: 432 FWREQVNQYWELMNV--NKTEVRNVMDTNAFIGGFAAAMNSYPLWVMNVVPATMNDTLSG 489
Query: 499 IYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS--EIEERGCSFEDLLIEMDRMLRPEG 556
IY RGL G HDWCE FSTYPRTYDLLHA +F+ +I GC ED+++EMDR++RP+G
Sbjct: 490 IYQRGLTGAYHDWCEPFSTYPRTYDLLHADHLFTHYKIYGEGCLLEDIMLEMDRIIRPQG 549
Query: 557 FVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 608
F+IIRD+ SI++ +R W+ E++ + E VL +KK W
Sbjct: 550 FIIIRDEESIVSRVRDLAPKFLWEVEAHELQDKY----KKTETVLFCRKKFW 597
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q84TJ0|PMT6_ARATH Probable methyltransferase PMT6 OS=Arabidopsis thaliana GN=At3g10200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust.
Identities = 248/533 (46%), Positives = 335/533 (62%), Gaps = 15/533 (2%)
Query: 80 VPKS-IPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKG 138
+P+S + +C + ++E IPC + ++QL NLS E ERHCPP E R CLVPPP
Sbjct: 67 IPESGMNVCPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHCPPLEHRLFCLVPPPND 126
Query: 139 YKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILA 198
YKIP+RWP SRD VW++N+ HTHLA+ K Q+W+ G+ FPGGGTHF GA +YI
Sbjct: 127 YKIPIRWPTSRDYVWRSNVNHTHLAQVKGGQNWVHEQGQFWWFPGGGTHFKHGAAEYIQR 186
Query: 199 LARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE 258
L M+ + L + G ++ VLDVGCGVASF AYLL I +S AP D HENQIQFALE
Sbjct: 187 LGNMMTNETGDLRSAGVVQ-VLDVGCGVASFAAYLLPLGIQTISFAPKDGHENQIQFALE 245
Query: 259 RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318
RGI + + + TK+LPYP+ SFE+ HCSRCR+DW DGILL E+ RLLRP G+FVYSSP
Sbjct: 246 RGIGAMISAVATKQLPYPAASFEMVHCSRCRVDWHTNDGILLKEVHRLLRPNGFFVYSSP 305
Query: 319 EAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSS 378
AY D E IW+ + +L +MCWK++S+K QT IW K C ++ LC
Sbjct: 306 PAYRKDKEYPMIWDKLVNLTSAMCWKLISRKVQTAIWIKEEKEVCLKQKAELKLISLCDV 365
Query: 379 DDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIG 438
+D +W V +K C+ + E+ + L RL+A P L ++G++ +E+ D
Sbjct: 366 EDVLKPSWKVPLKDCVQ--ISGQTEERPSSLA---ERLSAYPATLRKIGISEDEYTSDTV 420
Query: 439 IWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI 498
W+ +V YW+ M + RNVMDMN+ +GGFAAA+ VWVMN+ P M+ L
Sbjct: 421 FWREQVNHYWRLMNV--NETEVRNVMDMNAFIGGFAAAMNSYPVWVMNIVPATMNDTLSG 478
Query: 499 IYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER---GCSFEDLLIEMDRMLRPE 555
I++RGL G HDWCE+FSTYPRTYDL+H+ VFS + GC ED+++EMDR++RP+
Sbjct: 479 IFERGLNGAFHDWCEAFSTYPRTYDLVHSDHVFSHYNKSYGDGCLLEDIMLEMDRIVRPQ 538
Query: 556 GFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 608
GFVIIRD+ II+ IR W+ E+E + ++ E VL +K+ W
Sbjct: 539 GFVIIRDEEYIISRIRGLAPKFLWEVETHELENKDKKIT---ESVLFCRKRFW 588
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 487 bits (1254), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/584 (44%), Positives = 348/584 (59%), Gaps = 28/584 (4%)
Query: 33 YGSTSAPGLRRSDDESSGFDGSDPVLGTFGRNRDFDDLFEDQELNPEVP-KSIPICDMRY 91
+G A G+ SDD G SD V +G + + D + V K +C
Sbjct: 127 FGIVDANGVM-SDDFEVGEVESDTV-EDWGNQTEIVEAKSDGDSKARVRIKKFGMCPESM 184
Query: 92 SELIPCLDR-NLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRD 150
E IPCLD ++I +LK + E +ERHCP + NCLVPPPKGY+ P+ WP SRD
Sbjct: 185 REYIPCLDNTDVIKKLK---STERGERFERHCPEKGKGLNCLVPPPKGYRQPIPWPKSRD 241
Query: 151 EVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKL 210
EVW +N+PHT L E+K Q+W+ + K FPGGGT F GAD+Y+ +++M+ +
Sbjct: 242 EVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQYLDQMSKMVS----DI 297
Query: 211 NNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 270
G +IR +DVGCGVASFGAYLLS D++ MS+AP DVHENQIQFALERG+P+ T
Sbjct: 298 TFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAAAFAT 357
Query: 271 KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRI 330
+RL YPS++F+L HCSRCRI+W + DGILLLE++R+LR GGYF +++ Y H+P
Sbjct: 358 RRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQ 417
Query: 331 WNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLM 390
W M +L S+CWK+V K+ IW KP +N CYL R G++PPLC DDPD W +
Sbjct: 418 WTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVWYTNL 477
Query: 391 KACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTT-----EEFHEDIGIWQVRVV 445
K CIS K + G + WPARL PP RL+ + + E F + W +
Sbjct: 478 KPCISRIPEKGY---GGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIG 534
Query: 446 DYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMSARLKIIYDRG 503
Y + +K +K RNV+DM + GGFAAAL D D WV++V PV L +IYDRG
Sbjct: 535 GYVRALKW--KKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRG 592
Query: 504 LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563
L+G +HDWCE F TYPRTYD LHA +FS IE + C +L+EMDR+LRP G IRD
Sbjct: 593 LLGVMHDWCEPFDTYPRTYDFLHASGLFS-IERKRCEMSTILLEMDRILRPGGRAYIRDS 651
Query: 564 SSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKL 607
+++ I++ A+ W L + A R+L +K+L
Sbjct: 652 IDVMDEIQEITKAMGWHTSLRDTSEGPHA----SYRILTCEKRL 691
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 484 bits (1246), Expect = e-136, Method: Compositional matrix adjust.
Identities = 243/542 (44%), Positives = 336/542 (61%), Gaps = 33/542 (6%)
Query: 82 KSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKI 141
+ IC +E IPCLD + +K + + E +ER+CP NC VP P+GY+
Sbjct: 147 RKFEICSENMTEYIPCLDN--VEAIKRLNSTARGERFERNCPNDGMGLNCTVPIPQGYRS 204
Query: 142 PVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALAR 201
P+ WP SRDEVW N+PHT L E+K Q+W+ +K FPGGGT F GAD+Y+ +++
Sbjct: 205 PIPWPRSRDEVWFNNVPHTKLVEDKGGQNWIYKENDKFKFPGGGTQFIHGADQYLDQISQ 264
Query: 202 MLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI 261
M+ ++ G + R VLD+GCGVASFGAYL+S +++ MS+AP DVHENQIQFALERG+
Sbjct: 265 MIP----DISFGNHTRVVLDIGCGVASFGAYLMSRNVLTMSIAPKDVHENQIQFALERGV 320
Query: 262 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY 321
P+ + T+RL YPS++F+L HCSRCRI+W + DGILLLE++R+LR GGYFV+++ Y
Sbjct: 321 PAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVY 380
Query: 322 AHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDD 381
H+ W M +L +CW +V K+ IW KP++N+CYL R G PPLC+S+DD
Sbjct: 381 KHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIWQKPVNNTCYLSRGAGVSPPLCNSEDD 440
Query: 382 PDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTT-----EEFHED 436
PD W V +KACI+ + G L PWPARL PP RL+ + + + E F +
Sbjct: 441 PDNVWYVDLKACITRIEENGY---GANLAPWPARLLTPPDRLQTIQIDSYIARKELFVAE 497
Query: 437 IGIWQVRVVDY-----WKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD--KDVWVMNVAP 489
W+ + +Y WKQ+ RNV+DM + GGFAAAL + D WV+NV P
Sbjct: 498 SKYWKEIISNYVNALHWKQIG-------LRNVLDMRAGFGGFAAALAELKVDCWVLNVIP 550
Query: 490 VRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMD 549
V L +IYDRGL+G +HDWCE F TYPRTYDLLHA +FS IE + C+ +++EMD
Sbjct: 551 VSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHAAGLFS-IERKRCNMTTMMLEMD 609
Query: 550 RMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLWD 609
R+LRP G V IRD ++ + +++ A++W L E S RVL+ +K+
Sbjct: 610 RILRPGGRVYIRDTINVTSELQEIGNAMRWHTSLRETAEG----PHSSYRVLLCEKRFES 665
Query: 610 EE 611
E
Sbjct: 666 SE 667
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 474 bits (1219), Expect = e-132, Method: Compositional matrix adjust.
Identities = 242/550 (44%), Positives = 342/550 (62%), Gaps = 38/550 (6%)
Query: 73 DQELNPEVP---KSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRY 129
+++ +PEV + + +CD + IPCLD ++K N E+YERHCP ++
Sbjct: 129 EEKESPEVGFQIEKLKLCDKTKIDYIPCLDNE--EEIKRLNNTDRGENYERHCP--KQSL 184
Query: 130 NCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFH 189
+CL+PPP GYK P++WP SRD++W N+PHT L E+K Q+W+ +K FPGGGT F
Sbjct: 185 DCLIPPPDGYKKPIQWPQSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFVFPGGGTQFI 244
Query: 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVH 249
GAD+Y+ +++M+ + G R LD+GCGVASFGA+L+ + +S+AP DVH
Sbjct: 245 HGADQYLDQISQMIP----DITFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVAPKDVH 300
Query: 250 ENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRP 309
ENQIQFALERG+P+ + V T+RL YPS+SFE+ HCSRCRI+W + DGILLLE++R+LR
Sbjct: 301 ENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLRA 360
Query: 310 GGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVP 369
GGYFV+++ Y H+ + W M DL +CW+++ K+ +W KP++NSCY+ R
Sbjct: 361 GGYFVWAAQPVYKHEDNLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCYVSREA 420
Query: 370 GSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVT 429
G++PPLC DDDPD W V MK CI+ + G + WPARL PP RL+ + +
Sbjct: 421 GTKPPLCRPDDDPDDVWYVDMKPCITRLPDNGY---GANVSTWPARLHDPPERLQSIQMD 477
Query: 430 T-----EEFHEDIGIWQVRVVDY-----WKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD 479
E + W V Y WK+ K RNV+DM + GGFAAAL D
Sbjct: 478 AYISRKEIMKAESRFWLEVVESYVRVFRWKEFK-------LRNVLDMRAGFGGFAAALND 530
Query: 480 --KDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER 537
D WVMN+ PV L +IYDRGL G +HDWCE F TYPRTYDL+HA +FS +E++
Sbjct: 531 LGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLFS-VEKK 589
Query: 538 GCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSE 597
C+ ++++EMDRMLRP G V IRD S+++ +++ A+ GW + V + +S
Sbjct: 590 RCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAI---GWTAGVHDTGEGPHAS- 645
Query: 598 ERVLIAKKKL 607
R+LI K++
Sbjct: 646 VRILICDKRI 655
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1186), Expect = e-129, Method: Compositional matrix adjust.
Identities = 242/541 (44%), Positives = 334/541 (61%), Gaps = 38/541 (7%)
Query: 87 CDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWP 146
CDM SE PC DR + + + ++M++ ERHCP + CL+PPP YKIP +WP
Sbjct: 113 CDMSLSEYTPCEDR----ERGRRFDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWP 168
Query: 147 ASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFP 206
SRD W NIPH L+ EK+ Q+W+ V GE+ FPGGGT F GAD YI +AR++
Sbjct: 169 QSRDYAWYDNIPHKELSIEKAIQNWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPL- 227
Query: 207 SDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLG 266
G IR +D GCGVASFGAYLL DI+AMS AP D HE Q+QFALERG+P+ +G
Sbjct: 228 -----TDGAIRTAIDTGCGVASFGAYLLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIG 282
Query: 267 VLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP-------- 318
++G++RLPYP+R+F+LAHCSRC I W Q DG+ L E+DR+LRPGGY++ S P
Sbjct: 283 IMGSRRLPYPARAFDLAHCSRCLIPWFQNDGLYLTEVDRVLRPGGYWILSGPPINWKKYW 342
Query: 319 EAYAHDPEN-RRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISN-SC-YLKRVPGSRPPL 375
+ + E+ ++ +++ D +S+CWK V++K IW KPI++ C LKRV + PPL
Sbjct: 343 KGWERSQEDLKQEQDSIEDAARSLCWKKVTEKGDLSIWQKPINHVECNKLKRVHKT-PPL 401
Query: 376 CSSDDDPDVTWNVLMKACISPYSAKMHHEK--GTGLVPWPARLTAPPPRLEEVG-----V 428
CS D PD W +++C++P ++ G L WP R A PPR+ +G +
Sbjct: 402 CSKSDLPDFAWYKDLESCVTPLPEANSSDEFAGGALEDWPNRAFAVPPRI--IGGTIPDI 459
Query: 429 TTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVA 488
E+F ED +W+ R + Y+KQ+ + FRN+MDMN+ LGGFAAA+ WVMNV
Sbjct: 460 NAEKFREDNEVWKER-ISYYKQIMPELSRGRFRNIMDMNAYLGGFAAAMMKYPSWVMNVV 518
Query: 489 PVRMSAR-LKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIE 547
PV + L +I++RG IGT DWCE FSTYPRTYDL+HA +FS E R C +L+E
Sbjct: 519 PVDAEKQTLGVIFERGFIGTYQDWCEGFSTYPRTYDLIHAGGLFSIYENR-CDVTLILLE 577
Query: 548 MDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKL 607
MDR+LRPEG V+ RD ++ I+ ++W + + E + E++L+A K
Sbjct: 578 MDRILRPEGTVVFRDTVEMLTKIQSITNGMRWKSRILDHE----RGPFNPEKILLAVKSY 633
Query: 608 W 608
W
Sbjct: 634 W 634
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 615 | ||||||
| 359488775 | 612 | PREDICTED: probable methyltransferase PM | 0.993 | 0.998 | 0.810 | 0.0 | |
| 255560962 | 603 | S-adenosylmethionine-dependent methyltra | 0.977 | 0.996 | 0.803 | 0.0 | |
| 449450056 | 610 | PREDICTED: probable methyltransferase PM | 0.944 | 0.952 | 0.798 | 0.0 | |
| 449483797 | 610 | PREDICTED: probable methyltransferase PM | 0.944 | 0.952 | 0.797 | 0.0 | |
| 22326809 | 612 | putative methyltransferase PMT9 [Arabido | 0.978 | 0.983 | 0.752 | 0.0 | |
| 42573369 | 612 | putative methyltransferase PMT9 [Arabido | 0.978 | 0.983 | 0.747 | 0.0 | |
| 224060159 | 528 | predicted protein [Populus trichocarpa] | 0.853 | 0.994 | 0.849 | 0.0 | |
| 157849758 | 608 | dehydration-responsive protein-related [ | 0.978 | 0.990 | 0.729 | 0.0 | |
| 7573468 | 632 | putative protein [Arabidopsis thaliana] | 0.978 | 0.952 | 0.728 | 0.0 | |
| 297807471 | 593 | hypothetical protein ARALYDRAFT_909408 [ | 0.947 | 0.983 | 0.708 | 0.0 |
| >gi|359488775|ref|XP_002271722.2| PREDICTED: probable methyltransferase PMT9-like [Vitis vinifera] gi|296087585|emb|CBI34841.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1023 bits (2645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/616 (81%), Positives = 550/616 (89%), Gaps = 5/616 (0%)
Query: 1 MKQKSEQQIRTSKQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVLGT 60
MK KSE +K + YVL+GL+ LGL+CLY GS APG RR+DD+++ DG DPVLG
Sbjct: 1 MKHKSEPA-HVTKLVKYVLVGLVVFLGLICLYCGSLLAPGSRRADDDATA-DGVDPVLGG 58
Query: 61 FGR-NRDFDDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYE 119
+ R + DFDDLFEDQE NPEVPKSIP+CDMR+SELIPCLDRNLIYQLKLKPNL+LMEHYE
Sbjct: 59 YVREDGDFDDLFEDQEHNPEVPKSIPVCDMRFSELIPCLDRNLIYQLKLKPNLALMEHYE 118
Query: 120 RHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKI 179
RHCPPPERRYNCL+PPP GYKIP+RWPASRDEVWK NIPHTHLA EKSDQ+WMVVNG+KI
Sbjct: 119 RHCPPPERRYNCLIPPPIGYKIPIRWPASRDEVWKVNIPHTHLASEKSDQNWMVVNGDKI 178
Query: 180 NFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDII 239
NFPGGGTHFH+GADKYI+ALARMLKFP DKLNNGGNIRNVLDVGCGVASFGAYLL H+I+
Sbjct: 179 NFPGGGTHFHNGADKYIIALARMLKFPDDKLNNGGNIRNVLDVGCGVASFGAYLLPHNIM 238
Query: 240 AMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIL 299
AMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFE+AHCSRCRIDWLQRDGIL
Sbjct: 239 AMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFEMAHCSRCRIDWLQRDGIL 298
Query: 300 LLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 359
LLELDRLLRPGGYFVYSSPEAYA D NRRIWNA DLLK MCW++VSKKDQTVIWAKP
Sbjct: 299 LLELDRLLRPGGYFVYSSPEAYARDAVNRRIWNATSDLLKRMCWRVVSKKDQTVIWAKPT 358
Query: 360 SNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAP 419
SNSC+ KR PG+ PPLCSSDDDPD +WNV MKACI+PYS K+H +KG+GLVPWP RLT
Sbjct: 359 SNSCFAKRDPGTLPPLCSSDDDPDASWNVFMKACITPYSGKVHRQKGSGLVPWPQRLTTA 418
Query: 420 PPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD 479
P RLEE G++ EEF ED IW RV +YWKQMK+V +K++FRNVMDMNSNLGGFAAALKD
Sbjct: 419 PSRLEEFGISAEEFQEDTSIWYFRVFEYWKQMKSVVEKDSFRNVMDMNSNLGGFAAALKD 478
Query: 480 KDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGC 539
KDVWVMNVAPV SA+LKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAW+VFSEIEE GC
Sbjct: 479 KDVWVMNVAPVNASAKLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWQVFSEIEEHGC 538
Query: 540 SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEER 599
S EDLLIEMDR+LRP+GFVIIRD+ SIINYI+KF+ AL+WDGW EVEPRID LS+S+ER
Sbjct: 539 SSEDLLIEMDRILRPDGFVIIRDRPSIINYIQKFLIALRWDGWSIEVEPRIDVLSASDER 598
Query: 600 VLIAKKKLWDEEVAAI 615
VLIA+KK W EEV+ I
Sbjct: 599 VLIARKK-W-EEVSTI 612
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560962|ref|XP_002521494.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223539393|gb|EEF40984.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1008 bits (2605), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/610 (80%), Positives = 544/610 (89%), Gaps = 9/610 (1%)
Query: 7 QQIRTSKQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVLGTFGRNRD 66
+QIRTSK +TY+L+GLI+ LGL+CLYYGST AP L RSD + +DPV + R D
Sbjct: 2 KQIRTSKLITYILIGLITFLGLICLYYGSTIAPALYRSDRFG---EATDPVSTGYARTPD 58
Query: 67 FDD-LFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPP 125
DD LF QEL VP+SIPICDM+YSELIPCLDRNLIYQLKLKPNL+LMEHYERHCPPP
Sbjct: 59 LDDDLF--QEL---VPQSIPICDMKYSELIPCLDRNLIYQLKLKPNLTLMEHYERHCPPP 113
Query: 126 ERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGG 185
ERRYNCL+PPP GYKIP+RWP SRDE+WK NIPHTHLA+EKSDQ+WMVVNG+KINFPGGG
Sbjct: 114 ERRYNCLIPPPIGYKIPIRWPESRDEIWKVNIPHTHLAQEKSDQNWMVVNGDKINFPGGG 173
Query: 186 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAP 245
THFH GADKYI +LARMLKFP+DKL+NGG IRNVLDVGCGVASFGAYLL+HDII MSLAP
Sbjct: 174 THFHYGADKYIASLARMLKFPNDKLHNGGYIRNVLDVGCGVASFGAYLLAHDIITMSLAP 233
Query: 246 NDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDR 305
NDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDR
Sbjct: 234 NDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDR 293
Query: 306 LLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYL 365
LLRPGGYF YSSPEAYAHDPENRRIW+AM+DLL MCW++V +KDQTVIWAKP SNSC+L
Sbjct: 294 LLRPGGYFAYSSPEAYAHDPENRRIWSAMHDLLGRMCWRVVVRKDQTVIWAKPTSNSCFL 353
Query: 366 KRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEE 425
KR PG++PPLCSSDDDPD TWNV MKACISPYS+KMH E+G+GLVPWP RL A PPRLEE
Sbjct: 354 KREPGTQPPLCSSDDDPDATWNVHMKACISPYSSKMHKERGSGLVPWPRRLIAAPPRLEE 413
Query: 426 VGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVM 485
+GV+ EEF ED IWQ RV +YWKQMK+V +++ FRNVMDMNSNLGGF A LKD DVWVM
Sbjct: 414 IGVSPEEFQEDTRIWQFRVSEYWKQMKSVVRRSYFRNVMDMNSNLGGFGAVLKDTDVWVM 473
Query: 486 NVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLL 545
NVAPV SARLKIIYDRGLIGTVHDWCE+FSTYPRT+DLLHAW+VF+E+EE GCS EDLL
Sbjct: 474 NVAPVNQSARLKIIYDRGLIGTVHDWCEAFSTYPRTFDLLHAWEVFAEVEEHGCSSEDLL 533
Query: 546 IEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKK 605
IEMDR+LRP+GFVIIRDK SIINYIRKF+TAL+WD W+SEVEPR DAL+ +EERVLI +K
Sbjct: 534 IEMDRILRPQGFVIIRDKPSIINYIRKFLTALRWDHWISEVEPRSDALALNEERVLIVRK 593
Query: 606 KLWDEEVAAI 615
KLW EV+AI
Sbjct: 594 KLWSGEVSAI 603
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450056|ref|XP_004142780.1| PREDICTED: probable methyltransferase PMT9-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/587 (79%), Positives = 524/587 (89%), Gaps = 6/587 (1%)
Query: 30 CLYYGSTSAPGLRRSDDESSGFDGSDPVLGTFGRNRDFDDLFE-DQELNPEVPKSIPICD 88
CLYYGS+ AP RRSD E S DP+ N DFDDL E ++L+ +VP+SIPICD
Sbjct: 29 CLYYGSSFAPSSRRSDGEDS-----DPLFAGDLSNHDFDDLHEPHRDLSLQVPQSIPICD 83
Query: 89 MRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPAS 148
R+SELIPCLDRNLIYQLKLK NLSLMEHYERHCPPPERRYNCL+PPP GYKIP+RWP S
Sbjct: 84 ERFSELIPCLDRNLIYQLKLKLNLSLMEHYERHCPPPERRYNCLIPPPTGYKIPIRWPNS 143
Query: 149 RDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSD 208
RDEVWKANIPHTHLA+EKSDQ+WMVVNG+KINFPGGGTHFH GADKYI+ALARMLKFP D
Sbjct: 144 RDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHYGADKYIIALARMLKFPGD 203
Query: 209 KLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL 268
KLNNGGN+RNVLDVGCGVASFGAYLLSHDI+AMSLAPNDVHENQIQFALERGIPSTLGVL
Sbjct: 204 KLNNGGNLRNVLDVGCGVASFGAYLLSHDIVAMSLAPNDVHENQIQFALERGIPSTLGVL 263
Query: 269 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328
GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF YSSPEAYAHD ENR
Sbjct: 264 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAHDQENR 323
Query: 329 RIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNV 388
RI AM+D+LK MCWK+V+KKDQTVIW KP+SNSCYLKR PG+ PPLC+ DDD D+TWNV
Sbjct: 324 RIGMAMHDILKRMCWKVVAKKDQTVIWGKPMSNSCYLKRDPGTLPPLCNLDDDSDLTWNV 383
Query: 389 LMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYW 448
M+ACIS YSAKMH +KG+GLVPWP RLT+ PPRLEEVGV+ EEF ED +WQ+RV +YW
Sbjct: 384 SMQACISRYSAKMHKQKGSGLVPWPQRLTSAPPRLEEVGVSAEEFKEDSTVWQLRVAEYW 443
Query: 449 KQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTV 508
K+M+ V Q+++ RNVMDMNSNLGGFAAAL +KDVWVMNVAP+ SA+LKI+YDRGL+GTV
Sbjct: 444 KEMRLVIQRDSIRNVMDMNSNLGGFAAALINKDVWVMNVAPINSSAKLKIVYDRGLLGTV 503
Query: 509 HDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIIN 568
HDWCE+FSTYPRTYDLLHAW VFS+I RGCS EDLLIEMDR+LRP+GFVIIRD S+IN
Sbjct: 504 HDWCEAFSTYPRTYDLLHAWAVFSDINVRGCSMEDLLIEMDRILRPDGFVIIRDVPSVIN 563
Query: 569 YIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLWDEEVAAI 615
YIRK+ TAL+WDGWLSEVEPR+DALS EERVLIA+KKLW++E+A +
Sbjct: 564 YIRKYFTALRWDGWLSEVEPRVDALSKVEERVLIARKKLWEKELATV 610
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483797|ref|XP_004156694.1| PREDICTED: probable methyltransferase PMT9-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 971 bits (2509), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/587 (79%), Positives = 524/587 (89%), Gaps = 6/587 (1%)
Query: 30 CLYYGSTSAPGLRRSDDESSGFDGSDPVLGTFGRNRDFDDLFE-DQELNPEVPKSIPICD 88
CLYYGS+ AP RRSD E S DP+ N DFDDL E ++L+ +VP+SIPICD
Sbjct: 29 CLYYGSSFAPSSRRSDGEDS-----DPLFAGDLSNHDFDDLHEPRRDLSLQVPQSIPICD 83
Query: 89 MRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPAS 148
R+SELIPCLDRNLIYQLKLK NLSLMEHYERHCPPPERRYNCL+PPP GYKIP+RWP S
Sbjct: 84 ERFSELIPCLDRNLIYQLKLKLNLSLMEHYERHCPPPERRYNCLIPPPTGYKIPIRWPNS 143
Query: 149 RDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSD 208
RDEVWKANIPHTHLA+EKSDQ+WMVVNG+KINFPGGGTHFH GADKYI+ALARMLKFP D
Sbjct: 144 RDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHYGADKYIIALARMLKFPGD 203
Query: 209 KLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL 268
KLNNGGN+RNVLDVGCGVASFGAYLLSHDI+AMSLAPNDVHENQIQFALERGIPSTLGVL
Sbjct: 204 KLNNGGNLRNVLDVGCGVASFGAYLLSHDIVAMSLAPNDVHENQIQFALERGIPSTLGVL 263
Query: 269 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328
GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF YSSPEAYAHD ENR
Sbjct: 264 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAHDQENR 323
Query: 329 RIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNV 388
RI AM+D+LK MCWK+V+KKDQTVIW KP+SNSCYLKR PG+ PPLC+ DDD D+TWNV
Sbjct: 324 RIGMAMHDILKRMCWKVVAKKDQTVIWGKPMSNSCYLKRDPGTLPPLCNLDDDSDLTWNV 383
Query: 389 LMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYW 448
M+ACIS YSAKMH +KG+GLVPWP RLT+ PPRLEEVGV+ EEF ED +WQ+RV +YW
Sbjct: 384 SMQACISRYSAKMHKQKGSGLVPWPQRLTSAPPRLEEVGVSAEEFKEDSTVWQLRVAEYW 443
Query: 449 KQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTV 508
K+M+ V Q+++ RNVMDMNSNLGGFAAAL +KDVWVMNVAP+ SA+LKI+YDRGL+GTV
Sbjct: 444 KEMRLVIQRDSIRNVMDMNSNLGGFAAALINKDVWVMNVAPINSSAKLKIVYDRGLLGTV 503
Query: 509 HDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIIN 568
HDWCE+FSTYPRTYDLLHAW VFS+I RGCS EDLLIEMDR+LRP+GFVIIRD S+IN
Sbjct: 504 HDWCEAFSTYPRTYDLLHAWAVFSDINVRGCSMEDLLIEMDRILRPDGFVIIRDVPSVIN 563
Query: 569 YIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLWDEEVAAI 615
YIR++ TAL+WDGWLSEVEPR+DALS EERVLIA+KKLW++E+A +
Sbjct: 564 YIRQYFTALRWDGWLSEVEPRVDALSKVEERVLIARKKLWEKELATV 610
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22326809|ref|NP_196947.2| putative methyltransferase PMT9 [Arabidopsis thaliana] gi|75248535|sp|Q8VZV7.1|PMT9_ARATH RecName: Full=Probable methyltransferase PMT9 gi|17380666|gb|AAL36163.1| unknown protein [Arabidopsis thaliana] gi|21280807|gb|AAM45045.1| unknown protein [Arabidopsis thaliana] gi|332004649|gb|AED92032.1| putative methyltransferase PMT9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/610 (75%), Positives = 522/610 (85%), Gaps = 8/610 (1%)
Query: 1 MKQKSEQQIR-TSKQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVLG 59
MK +++R T K TYVL+G I++LGL CLYYGS+ APG R+SD+ FDGS+ +
Sbjct: 1 MKHFRTERVRATPKLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDE----FDGSNNRVR 56
Query: 60 T-FGRNRDFDDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHY 118
T G R+ D + EVPKS+PICD R+SELIPCLDRNL YQLKLK NLSLMEHY
Sbjct: 57 TGIGSLRNRDIVLAVSRF--EVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHY 114
Query: 119 ERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEK 178
E HCPP ERR+NCLVPPP GYKIP+RWP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+K
Sbjct: 115 EHHCPPSERRFNCLVPPPVGYKIPLRWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDK 174
Query: 179 INFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDI 238
INFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDI
Sbjct: 175 INFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDI 234
Query: 239 IAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 298
IAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI
Sbjct: 235 IAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 294
Query: 299 LLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 358
LLLELDRLLRPGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ+VIW KP
Sbjct: 295 LLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKP 354
Query: 359 ISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTA 418
ISNSCYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVPWP RLTA
Sbjct: 355 ISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVPWPRRLTA 414
Query: 419 PPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK 478
PPPRLEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLGGFAAAL
Sbjct: 415 PPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALN 474
Query: 479 DKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 538
DKDVWVMNV PV+ S R+KIIYDRGLIG HDWCE+F TYPRT+DL+HAW F+E + RG
Sbjct: 475 DKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTFTETQARG 534
Query: 539 CSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEE 598
CSFEDLLIEMDR+LRPEGFVIIRD + I+YI+K++T LKWD W +E P+ D LS+ +E
Sbjct: 535 CSFEDLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPKGDPLSTKDE 594
Query: 599 RVLIAKKKLW 608
VLIA+KKLW
Sbjct: 595 IVLIARKKLW 604
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42573369|ref|NP_974781.1| putative methyltransferase PMT9 [Arabidopsis thaliana] gi|332004650|gb|AED92033.1| putative methyltransferase PMT9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/610 (74%), Positives = 521/610 (85%), Gaps = 8/610 (1%)
Query: 1 MKQKSEQQIR-TSKQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVLG 59
MK +++R T K TYVL+G I++LGL CLYYGS+ APG R+SD+ FDGS+ +
Sbjct: 1 MKHFRTERVRATPKLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDE----FDGSNNRVR 56
Query: 60 T-FGRNRDFDDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHY 118
T G R+ D + EVPKS+PICD R+SELIPCLDRNL YQLKLK NLSLMEHY
Sbjct: 57 TGIGSLRNRDIVLAVSRF--EVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHY 114
Query: 119 ERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEK 178
E HCPP ERR+NCLVPPP ++IP+RWP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+K
Sbjct: 115 EHHCPPSERRFNCLVPPPVVFQIPLRWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDK 174
Query: 179 INFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDI 238
INFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDI
Sbjct: 175 INFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDI 234
Query: 239 IAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 298
IAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI
Sbjct: 235 IAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 294
Query: 299 LLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 358
LLLELDRLLRPGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ+VIW KP
Sbjct: 295 LLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKP 354
Query: 359 ISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTA 418
ISNSCYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVPWP RLTA
Sbjct: 355 ISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVPWPRRLTA 414
Query: 419 PPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK 478
PPPRLEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLGGFAAAL
Sbjct: 415 PPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALN 474
Query: 479 DKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 538
DKDVWVMNV PV+ S R+KIIYDRGLIG HDWCE+F TYPRT+DL+HAW F+E + RG
Sbjct: 475 DKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTFTETQARG 534
Query: 539 CSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEE 598
CSFEDLLIEMDR+LRPEGFVIIRD + I+YI+K++T LKWD W +E P+ D LS+ +E
Sbjct: 535 CSFEDLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPKGDPLSTKDE 594
Query: 599 RVLIAKKKLW 608
VLIA+KKLW
Sbjct: 595 IVLIARKKLW 604
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224060159|ref|XP_002300064.1| predicted protein [Populus trichocarpa] gi|222847322|gb|EEE84869.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/525 (84%), Positives = 486/525 (92%)
Query: 86 ICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRW 145
ICD+++SELIPCLDRNLIYQLKLKPNL+LMEHYERHCPPPERR+NCL+PPP GYKIP+RW
Sbjct: 1 ICDIKHSELIPCLDRNLIYQLKLKPNLTLMEHYERHCPPPERRFNCLIPPPIGYKIPIRW 60
Query: 146 PASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKF 205
P SRDEVWKANIPHTHLA+EKSDQ+WMVVNGEKINFPGGGTHFHDGA+KYI++LARMLKF
Sbjct: 61 PESRDEVWKANIPHTHLAQEKSDQNWMVVNGEKINFPGGGTHFHDGANKYIVSLARMLKF 120
Query: 206 PSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTL 265
P+DKL+NGGNIRNVLDVGCGVASFGAYLLSH IIAMS+APNDVHENQIQFALERGIPSTL
Sbjct: 121 PNDKLHNGGNIRNVLDVGCGVASFGAYLLSHSIIAMSIAPNDVHENQIQFALERGIPSTL 180
Query: 266 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP 325
GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF YSSPEAYA DP
Sbjct: 181 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYALDP 240
Query: 326 ENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVT 385
ENRRIWNAM+DLL+ MCW++ KKDQTVIW KP+ N CYLKR PG++PPLCS+ DDPD T
Sbjct: 241 ENRRIWNAMHDLLRRMCWRVAVKKDQTVIWQKPLGNGCYLKRDPGTQPPLCSTGDDPDAT 300
Query: 386 WNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVV 445
WNV MKACI+PYSAKMH E+G+GLVPWP RLTA PRLE++GV+ E+FHED IWQ RV
Sbjct: 301 WNVHMKACIAPYSAKMHKERGSGLVPWPKRLTAASPRLEDIGVSPEQFHEDTNIWQFRVN 360
Query: 446 DYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLI 505
+YWKQMK+V +KN FRNVMDMNSNLGGF AALKD DVWVMNVAPV MSARLKIIYDRGLI
Sbjct: 361 EYWKQMKSVVRKNYFRNVMDMNSNLGGFGAALKDTDVWVMNVAPVNMSARLKIIYDRGLI 420
Query: 506 GTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS 565
GTVHDWCE+FSTYPRTYDLLHAW VFSEI+E GC EDLLIEMDR+LRP+GFVIIRDK
Sbjct: 421 GTVHDWCEAFSTYPRTYDLLHAWGVFSEIQEHGCGVEDLLIEMDRILRPDGFVIIRDKPL 480
Query: 566 IINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLWDE 610
IINYIRKF+TAL+WD WLSEVEPR DALS SEERVLIA+KKLW E
Sbjct: 481 IINYIRKFVTALRWDRWLSEVEPRSDALSLSEERVLIARKKLWSE 525
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|157849758|gb|ABV89662.1| dehydration-responsive protein-related [Brassica rapa] | Back alignment and taxonomy information |
|---|
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/618 (72%), Positives = 521/618 (84%), Gaps = 16/618 (2%)
Query: 1 MKQKSEQQIRTS--KQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVL 58
MK +++R + K TYVL+G I++LGL CLYYGS+ APG R+SD+ FDGS P
Sbjct: 1 MKPSRSERVRATPPKLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDE----FDGSSPAR 56
Query: 59 GTFGRNRDFDDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHY 118
F NRD E EVP+SIPICD ++S+LIPCLDR+L +QLKL+ NL+LMEHY
Sbjct: 57 AGFASNRD-------GESRVEVPRSIPICDSKHSDLIPCLDRDLYHQLKLRLNLTLMEHY 109
Query: 119 ERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEK 178
E HCPPPERR+NCLVPPP GY IP++WP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+K
Sbjct: 110 EHHCPPPERRFNCLVPPPAGYMIPIKWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDK 169
Query: 179 INFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDI 238
INFPGGGTHFH GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDI
Sbjct: 170 INFPGGGTHFHYGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDI 229
Query: 239 IAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 298
IAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI
Sbjct: 230 IAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 289
Query: 299 LLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 358
LLLELDRLLRPGGYFVYSSPEAYAHDPENR+I AM+DL + MCW++V+K+DQ+VIW KP
Sbjct: 290 LLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGTAMHDLFRRMCWRVVAKRDQSVIWGKP 349
Query: 359 ISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTA 418
ISNSCYLKR PG +PPLC S DDPD TWNV MKACI+PYS +MH E+ +GLVPWP RLTA
Sbjct: 350 ISNSCYLKRGPGVQPPLCPSGDDPDATWNVSMKACITPYSVRMHKERWSGLVPWPRRLTA 409
Query: 419 PPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK 478
PPPRLEE+GVT E+F ED W+ RV++YWK +K + QKN+ RNVMDM+SNLGGFAAAL
Sbjct: 410 PPPRLEEIGVTPEQFREDTETWRHRVMEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALN 469
Query: 479 DKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 538
DKDVWVMNV PV+ R+KIIYDRGLIG HDWCE+F TYPRT+DL+HAW F+E + RG
Sbjct: 470 DKDVWVMNVIPVQSQPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTFTETQARG 529
Query: 539 CSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSS-E 597
CS ED IEMDR+LRPEGFVIIRD S I+YI+K++T LKWD W++E P D+LS++ +
Sbjct: 530 CSIEDFFIEMDRILRPEGFVIIRDTSENISYIKKYLTLLKWDKWMTETTPNGDSLSAAKD 589
Query: 598 ERVLIAKKKLWDEEVAAI 615
ERVLIA+KKLW VAAI
Sbjct: 590 ERVLIARKKLW--SVAAI 605
|
Source: Brassica rapa Species: Brassica rapa Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7573468|emb|CAB87782.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/630 (72%), Positives = 522/630 (82%), Gaps = 28/630 (4%)
Query: 1 MKQKSEQQIR-TSKQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVLG 59
MK +++R T K TYVL+G I++LGL CLYYGS+ APG R+SD+ FDGS+ +
Sbjct: 1 MKHFRTERVRATPKLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDE----FDGSNNRVR 56
Query: 60 T-FGRNRDFDDLFEDQELNPEVPKSIPI--------------------CDMRYSELIPCL 98
T G R+ D + EVPKS+PI CD R+SELIPCL
Sbjct: 57 TGIGSLRNRDIVLAVSRF--EVPKSVPISSLNLGFSCSGCTHFDPVQICDSRHSELIPCL 114
Query: 99 DRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIP 158
DRNL YQLKLK NLSLMEHYE HCPP ERR+NCLVPPP GYKIP+RWP SRDEVWKANIP
Sbjct: 115 DRNLHYQLKLKLNLSLMEHYEHHCPPSERRFNCLVPPPVGYKIPLRWPVSRDEVWKANIP 174
Query: 159 HTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRN 218
HTHLA+EKSDQ+WMVVNG+KINFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRN
Sbjct: 175 HTHLAQEKSDQNWMVVNGDKINFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRN 234
Query: 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSR 278
VLDVGCGVASFGAYLLSHDIIAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSR
Sbjct: 235 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSR 294
Query: 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 338
SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR+I NAM+DL
Sbjct: 295 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLF 354
Query: 339 KSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYS 398
K MCWK+V+K+DQ+VIW KPISNSCYLKR PG PPLC S DDPD TWNV MKACISPYS
Sbjct: 355 KRMCWKVVAKRDQSVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYS 414
Query: 399 AKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKN 458
+MH E+ +GLVPWP RLTAPPPRLEE+GVT E+F ED W++RV++YWK +K + QKN
Sbjct: 415 VRMHKERWSGLVPWPRRLTAPPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKN 474
Query: 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTY 518
+ RNVMDM+SNLGGFAAAL DKDVWVMNV PV+ S R+KIIYDRGLIG HDWCE+F TY
Sbjct: 475 SIRNVMDMSSNLGGFAAALNDKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTY 534
Query: 519 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALK 578
PRT+DL+HAW F+E + RGCSFEDLLIEMDR+LRPEGFVIIRD + I+YI+K++T LK
Sbjct: 535 PRTFDLIHAWNTFTETQARGCSFEDLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLK 594
Query: 579 WDGWLSEVEPRIDALSSSEERVLIAKKKLW 608
WD W +E P+ D LS+ +E VLIA+KKLW
Sbjct: 595 WDKWSTETTPKGDPLSTKDEIVLIARKKLW 624
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807471|ref|XP_002871619.1| hypothetical protein ARALYDRAFT_909408 [Arabidopsis lyrata subsp. lyrata] gi|297317456|gb|EFH47878.1| hypothetical protein ARALYDRAFT_909408 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/610 (70%), Positives = 502/610 (82%), Gaps = 27/610 (4%)
Query: 1 MKQKSEQQIR-TSKQLTYVLLGLISVLGLVCLYYGSTSAPGLRRSDDESSGFDGSDPVLG 59
MK +++R T K TYVL+G I++LGL CLYYGS+ APG R+SD+ FDGS+ +
Sbjct: 1 MKHLRTERVRPTPKLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDE----FDGSNHRVR 56
Query: 60 T-FGRNRDFDDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHY 118
T G R+ D + EVPKS+P+ + + LI L+ + H
Sbjct: 57 TGIGSVRNRDGVLAVSRF--EVPKSVPVRESNHLILI---------------ELARLHH- 98
Query: 119 ERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEK 178
CPPPERR+NCLVPPP GYKIP+RWP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+K
Sbjct: 99 ---CPPPERRFNCLVPPPIGYKIPLRWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDK 155
Query: 179 INFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDI 238
INFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDI
Sbjct: 156 INFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDI 215
Query: 239 IAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 298
IAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI
Sbjct: 216 IAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 275
Query: 299 LLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 358
LLLELDRLLRPGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ+VIW KP
Sbjct: 276 LLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKP 335
Query: 359 ISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTA 418
ISNSCYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVPWP RLTA
Sbjct: 336 ISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVPWPRRLTA 395
Query: 419 PPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK 478
PPPRLEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLGGFAAAL
Sbjct: 396 PPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALN 455
Query: 479 DKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 538
DKDVWVMNV PV+ S R+KIIYDRGLIG HDWCE+F TYPRT+DL+HAW F+E + RG
Sbjct: 456 DKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTFTETQTRG 515
Query: 539 CSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEE 598
CSFEDLLIEMDR+LRPEGFVIIRD + I+YI+K++T LKWD W +E P+ D+LS+ ++
Sbjct: 516 CSFEDLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPKGDSLSTKDD 575
Query: 599 RVLIAKKKLW 608
RVLIA+K+LW
Sbjct: 576 RVLIARKRLW 585
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 615 | ||||||
| TAIR|locus:2145658 | 612 | AT5G14430 [Arabidopsis thalian | 0.980 | 0.985 | 0.714 | 2.5e-246 | |
| TAIR|locus:2129660 | 608 | AT4G14360 [Arabidopsis thalian | 0.852 | 0.861 | 0.650 | 2.7e-203 | |
| TAIR|locus:2090935 | 611 | AT3G23300 [Arabidopsis thalian | 0.869 | 0.875 | 0.648 | 4.4e-203 | |
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.936 | 0.924 | 0.618 | 3.1e-202 | |
| TAIR|locus:2150670 | 600 | AT5G04060 [Arabidopsis thalian | 0.840 | 0.861 | 0.451 | 5.3e-127 | |
| TAIR|locus:2076264 | 591 | AT3G10200 [Arabidopsis thalian | 0.842 | 0.876 | 0.454 | 4.3e-125 | |
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.826 | 0.731 | 0.463 | 1.5e-124 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.869 | 0.784 | 0.424 | 2.4e-122 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.840 | 0.789 | 0.432 | 2.8e-121 | |
| TAIR|locus:2196651 | 639 | AT1G33170 [Arabidopsis thalian | 0.852 | 0.820 | 0.431 | 7.7e-119 |
| TAIR|locus:2145658 AT5G14430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2373 (840.4 bits), Expect = 2.5e-246, P = 2.5e-246
Identities = 435/609 (71%), Positives = 493/609 (80%)
Query: 1 MKQKSEQQIR-TSKQLTYXXXXXXXXXXXXXXYYGSTSAPGLRRXXXXXXXXXXXXPVLG 59
MK +++R T K TY YYGS+ APG R+ +G
Sbjct: 1 MKHFRTERVRATPKLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDEFDGSNNRVRTGIG 60
Query: 60 TFGRNRDFDDLFEDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYE 119
+ RNRD + EVPKS+PICD R+SELIPCLDRNL YQLKLK NLSLMEHYE
Sbjct: 61 SL-RNRDI--VLAVSRF--EVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHYE 115
Query: 120 RHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKI 179
HCPP ERR+NCLVPPP GYKIP+RWP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+KI
Sbjct: 116 HHCPPSERRFNCLVPPPVGYKIPLRWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKI 175
Query: 180 NFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDII 239
NFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDII
Sbjct: 176 NFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDII 235
Query: 240 AMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIX 299
AMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI
Sbjct: 236 AMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIL 295
Query: 300 XXXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 359
PGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ+VIW KPI
Sbjct: 296 LLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPI 355
Query: 360 SNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAP 419
SNSCYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVPWP RLTAP
Sbjct: 356 SNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVPWPRRLTAP 415
Query: 420 PPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD 479
PPRLEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLGGFAAAL D
Sbjct: 416 PPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALND 475
Query: 480 KDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGC 539
KDVWVMNV PV+ S R+KIIYDRGLIG HDWCE+F TYPRT+DL+HAW F+E + RGC
Sbjct: 476 KDVWVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTFTETQARGC 535
Query: 540 SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEER 599
SFEDLLIEMDR+LRPEGFVIIRD + I+YI+K++T LKWD W +E P+ D LS+ +E
Sbjct: 536 SFEDLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPKGDPLSTKDEI 595
Query: 600 VLIAKKKLW 608
VLIA+KKLW
Sbjct: 596 VLIARKKLW 604
|
|
| TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1967 (697.5 bits), Expect = 2.7e-203, P = 2.7e-203
Identities = 345/530 (65%), Positives = 422/530 (79%)
Query: 81 PKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYK 140
P+S P+CD R+SELIPCLDRNLIYQ++LK +LSLMEHYERHCPPPERR+NCL+PPP GYK
Sbjct: 73 PRSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGYK 132
Query: 141 IPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALA 200
+P++WP SRDEVWK NIPHTHLA EKSDQ+WMVV G+KINFPGGGTHFH GADKYI ++A
Sbjct: 133 VPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKYIASMA 192
Query: 201 RMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG 260
ML +P++ LNNGG +R V DVGCGVASFG YLLS DI+ MSLAPNDVH+NQIQFALERG
Sbjct: 193 NMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALERG 252
Query: 261 IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSPEA 320
IP++LGVLGTKRLPYPSRSFEL+HCSRCRIDWLQRDGI PGGYF YSSPEA
Sbjct: 253 IPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEA 312
Query: 321 YAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDD 380
YA D E+ RIW M L++ MCWKI +K++QTVIW KP++N CYL+R PG++PPLC SD+
Sbjct: 313 YAQDEEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCRSDN 372
Query: 381 DPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIW 440
DPD W V M+ACI+ YS H KG+GL PWPARLT+PPPRL + G +T F +D +W
Sbjct: 373 DPDAVWGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTGMFEKDTELW 432
Query: 441 QVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIY 500
+ RV YW + + +T RN+MDM +++G FAAALK+KDVWVMNV P LK+IY
Sbjct: 433 RQRVDTYWDLLSPRIESDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLIY 492
Query: 501 DRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 560
DRGL+G VH WCE+FSTYPRTYDLLHAW + S+I+++GCS DLL+EMDR+LRP GF+II
Sbjct: 493 DRGLMGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKKGCSEVDLLLEMDRILRPSGFIII 552
Query: 561 RDKSSIINYIRKFITALKWDGWLSEVEPRIDALSS--SEERVLIAKKKLW 608
RDK ++++++K++ AL W+ EV + D+ S S+ V I +KKLW
Sbjct: 553 RDKQRVVDFVKKYLKALHWE----EVGTKTDSDSDQDSDNVVFIVQKKLW 598
|
|
| TAIR|locus:2090935 AT3G23300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1965 (696.8 bits), Expect = 4.4e-203, P = 4.4e-203
Identities = 348/537 (64%), Positives = 421/537 (78%)
Query: 72 EDQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNC 131
ED N P+S P+CD R+SELIPCLDRNLIYQ++LK +LSLMEHYERHCPPPERR+NC
Sbjct: 67 EDVVGNGFTPRSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNC 126
Query: 132 LVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDG 191
L+PPP GYKIP++WP SRDEVWK NIPHTHLA EKSDQ+WMVV GEKINFPGGGTHFH G
Sbjct: 127 LIPPPPGYKIPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGEKINFPGGGTHFHYG 186
Query: 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHEN 251
ADKYI ++A ML FP++ LNNGG +R LDVGCGVASFG YLL+ +I+ MSLAPNDVH+N
Sbjct: 187 ADKYIASMANMLNFPNNVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQN 246
Query: 252 QIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGG 311
QIQFALERGIP+ LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI PGG
Sbjct: 247 QIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGG 306
Query: 312 YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGS 371
YF YSSPEAYA D E+ RIW M L+ MCW I +K++QTVIW KP++N CYL R PG+
Sbjct: 307 YFAYSSPEAYAQDEEDLRIWREMSALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGREPGT 366
Query: 372 RPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTE 431
+PPLC+SD DPD + V M+ACI+ YS H KG+GL PWPARLT+PPPRL + G +T+
Sbjct: 367 QPPLCNSDSDPDAVYGVNMEACITQYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTD 426
Query: 432 EFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVR 491
F +D W+ RV YW + Q +T RN+MDM +++G FAAALK+KDVWVMNV P
Sbjct: 427 IFEKDTETWRQRVDTYWDLLSPKIQSDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPED 486
Query: 492 MSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRM 551
LK+IYDRGL+G VH WCE+FSTYPRTYDLLHAW + S+I++RGCS EDLL+EMDR+
Sbjct: 487 GPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKRGCSAEDLLLEMDRI 546
Query: 552 LRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 608
LRP GF++IRDK S+++ ++K++ AL W+ E + ++ S+ +LI +KKLW
Sbjct: 547 LRPSGFILIRDKQSVVDLVKKYLKALHWEA--VETKTASESDQDSDNVILIVQKKLW 601
|
|
| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1957 (694.0 bits), Expect = 3.1e-202, P = 3.1e-202
Identities = 361/584 (61%), Positives = 432/584 (73%)
Query: 32 YYGSTSAPGLRRXXXXXXXXXXXXPVLGTFGRNRDF--DDLFEDQELNPEVPKSIPICDM 89
YYGS+S G L N D DD + E + V KS P+CD
Sbjct: 31 YYGSSSQ-GASALEYGRSLRKLGSSYLSGDDDNGDTKQDDSVANAEDSLVVAKSFPVCDD 89
Query: 90 RYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASR 149
R+SE+IPCLDRN IYQ++LK +LSLMEHYERHCPPPERR+NCL+PPP GYK+P++WP SR
Sbjct: 90 RHSEIIPCLDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYKVPIKWPKSR 149
Query: 150 DEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDK 209
DEVWKANIPHTHLA+EKSDQ+WMV GEKI+FPGGGTHFH GADKYI ++A ML F +D
Sbjct: 150 DEVWKANIPHTHLAKEKSDQNWMVEKGEKISFPGGGTHFHYGADKYIASIANMLNFSNDV 209
Query: 210 LNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLG 269
LN+ G +R VLDVGCGVASFGAYLL+ DI+ MSLAPNDVH+NQIQFALERGIP+ LGVLG
Sbjct: 210 LNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFALERGIPAYLGVLG 269
Query: 270 TKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSPEAYAHDPENRR 329
TKRLPYPSRSFE AHCSRCRIDWLQRDG+ PGGYF YSSPEAYA D EN +
Sbjct: 270 TKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGGYFAYSSPEAYAQDEENLK 329
Query: 330 IWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVL 389
IW M L++ MCW+I K++QTV+W KP+SN CYL+R PG++PPLC SD DPD V
Sbjct: 330 IWKEMSALVERMCWRIAVKRNQTVVWQKPLSNDCYLEREPGTQPPLCRSDADPDAVAGVS 389
Query: 390 MKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWK 449
M+ACI+PYS H KG+GL PWPARLT+ PPRL + G +T+ F +D +W+ +V YW
Sbjct: 390 MEACITPYSKHDHKTKGSGLAPWPARLTSSPPRLADFGYSTDMFEKDTELWKQQVDSYWN 449
Query: 450 QMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVH 509
M + + NT RN+MDM +++G FAAALKDKDVWVMNV LK+IYDRGLIGT H
Sbjct: 450 LMSSKVKSNTVRNIMDMKAHMGSFAAALKDKDVWVMNVVSPDGPNTLKLIYDRGLIGTNH 509
Query: 510 DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINY 569
+WCE+FSTYPRTYDLLHAW +FS+I+ +GCS EDLLIEMDR+LRP GFVIIRDK S++
Sbjct: 510 NWCEAFSTYPRTYDLLHAWSIFSDIKSKGCSAEDLLIEMDRILRPTGFVIIRDKQSVVES 569
Query: 570 IRKFITALKWDGWLSE---VEPRIDALSSSEER--VLIAKKKLW 608
I+K++ AL W+ SE +D S E V I +KKLW
Sbjct: 570 IKKYLQALHWETVASEKVNTSSELDQDSEDGENNVVFIVQKKLW 613
|
|
| TAIR|locus:2150670 AT5G04060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
Identities = 240/532 (45%), Positives = 325/532 (61%)
Query: 80 VPKS-IPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKG 138
+P+S + +C ++++E IPC + + QL NLS E ERHCPP E+R CLVPPPK
Sbjct: 78 IPESGVNVCPLKFNEYIPCHNVTYVQQLLPSLNLSRREELERHCPPLEQRLFCLVPPPKD 137
Query: 139 YKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILA 198
YKIP+RWP SRD VW++N+ HTHLAE K Q+W+ G+ FPGGGTHF GA +YI
Sbjct: 138 YKIPIRWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEQGQLWWFPGGGTHFKHGAPEYIQR 197
Query: 199 LARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE 258
L M + L + G + VLDVGCGVASF AYLL I MS AP D HENQIQFALE
Sbjct: 198 LGNMTTNETGDLLSAG-VEQVLDVGCGVASFAAYLLPLGIKTMSFAPKDGHENQIQFALE 256
Query: 259 RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSP 318
RGI + + + TK++PYP+ SF++ HCSRCR+DW + DG+ P GYFVYS+P
Sbjct: 257 RGIRAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLMKEVNRLLRPNGYFVYSAP 316
Query: 319 EAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSS 378
AY D + IW+ + +L +MCWK++S+K QT IW K +C K +C
Sbjct: 317 PAYRKDKDFPVIWDKLVNLTSAMCWKLISRKVQTAIWVKEDDEACLRKNAELELITICGV 376
Query: 379 DDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIG 438
+D +W V ++ C+ ++ +K + L RL++ P L E G++ +EF D
Sbjct: 377 EDVSKASWKVPLRDCVD--ISENRQQKPSSLTD---RLSSYPTSLREKGISEDEFTLDTN 431
Query: 439 IWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI 498
W+ +V YW+ M K RNVMD N+ +GGFAAA+ +WVMNV P M+ L
Sbjct: 432 FWREQVNQYWELMNV--NKTEVRNVMDTNAFIGGFAAAMNSYPLWVMNVVPATMNDTLSG 489
Query: 499 IYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS--EIEERGCSFEDLLIEMDRMLRPEG 556
IY RGL G HDWCE FSTYPRTYDLLHA +F+ +I GC ED+++EMDR++RP+G
Sbjct: 490 IYQRGLTGAYHDWCEPFSTYPRTYDLLHADHLFTHYKIYGEGCLLEDIMLEMDRIIRPQG 549
Query: 557 FVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 608
F+IIRD+ SI++ +R W+ E++ + E VL +KK W
Sbjct: 550 FIIIRDEESIVSRVRDLAPKFLWEVEAHELQDKY----KKTETVLFCRKKFW 597
|
|
| TAIR|locus:2076264 AT3G10200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
Identities = 242/533 (45%), Positives = 328/533 (61%)
Query: 80 VPKS-IPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKG 138
+P+S + +C + ++E IPC + ++QL NLS E ERHCPP E R CLVPPP
Sbjct: 67 IPESGMNVCPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHCPPLEHRLFCLVPPPND 126
Query: 139 YKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILA 198
YKIP+RWP SRD VW++N+ HTHLA+ K Q+W+ G+ FPGGGTHF GA +YI
Sbjct: 127 YKIPIRWPTSRDYVWRSNVNHTHLAQVKGGQNWVHEQGQFWWFPGGGTHFKHGAAEYIQR 186
Query: 199 LARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE 258
L M+ + L + G ++ VLDVGCGVASF AYLL I +S AP D HENQIQFALE
Sbjct: 187 LGNMMTNETGDLRSAGVVQ-VLDVGCGVASFAAYLLPLGIQTISFAPKDGHENQIQFALE 245
Query: 259 RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSP 318
RGI + + + TK+LPYP+ SFE+ HCSRCR+DW DGI P G+FVYSSP
Sbjct: 246 RGIGAMISAVATKQLPYPAASFEMVHCSRCRVDWHTNDGILLKEVHRLLRPNGFFVYSSP 305
Query: 319 EAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSS 378
AY D E IW+ + +L +MCWK++S+K QT IW K C ++ LC
Sbjct: 306 PAYRKDKEYPMIWDKLVNLTSAMCWKLISRKVQTAIWIKEEKEVCLKQKAELKLISLCDV 365
Query: 379 DDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIG 438
+D +W V +K C+ S + E+ + L RL+A P L ++G++ +E+ D
Sbjct: 366 EDVLKPSWKVPLKDCVQ-ISGQTE-ERPSSLAE---RLSAYPATLRKIGISEDEYTSDTV 420
Query: 439 IWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI 498
W+ +V YW+ M + RNVMDMN+ +GGFAAA+ VWVMN+ P M+ L
Sbjct: 421 FWREQVNHYWRLMNV--NETEVRNVMDMNAFIGGFAAAMNSYPVWVMNIVPATMNDTLSG 478
Query: 499 IYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER---GCSFEDLLIEMDRMLRPE 555
I++RGL G HDWCE+FSTYPRTYDL+H+ VFS + GC ED+++EMDR++RP+
Sbjct: 479 IFERGLNGAFHDWCEAFSTYPRTYDLVHSDHVFSHYNKSYGDGCLLEDIMLEMDRIVRPQ 538
Query: 556 GFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 608
GFVIIRD+ II+ IR W+ E+E + ++ S VL +K+ W
Sbjct: 539 GFVIIRDEEYIISRIRGLAPKFLWEVETHELENKDKKITES---VLFCRKRFW 588
|
|
| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1224 (435.9 bits), Expect = 1.5e-124, P = 1.5e-124
Identities = 248/535 (46%), Positives = 323/535 (60%)
Query: 82 KSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKI 141
K +C E IPCLD + + KLK + E +ERHCP + NCLVPPPKGY+
Sbjct: 175 KKFGMCPESMREYIPCLDNTDVIK-KLK-STERGERFERHCPEKGKGLNCLVPPPKGYRQ 232
Query: 142 PVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALAR 201
P+ WP SRDEVW +N+PHT L E+K Q+W+ + K FPGGGT F GAD+Y L +
Sbjct: 233 PIPWPKSRDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQY---LDQ 289
Query: 202 MLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI 261
M K SD + G +IR +DVGCGVASFGAYLLS D++ MS+AP DVHENQIQFALERG+
Sbjct: 290 MSKMVSD-ITFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGV 348
Query: 262 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSPEAY 321
P+ T+RL YPS++F+L HCSRCRI+W + DGI GGYF +++ Y
Sbjct: 349 PAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVY 408
Query: 322 AHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDD 381
H+P W M +L S+CWK+V K+ IW KP +N CYL R G++PPLC DD
Sbjct: 409 KHEPALEEQWTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDD 468
Query: 382 PDVTWNVLMKACISPYSAKMHHEKGTG-LVP-WPARLTAPPPRLEEVGVTT-----EEFH 434
PD W +K CIS EKG G VP WPARL PP RL+ + + E F
Sbjct: 469 PDNVWYTNLKPCISRIP-----EKGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFK 523
Query: 435 EDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM 492
+ W + Y + +K +K RNV+DM + GGFAAAL D D WV++V PV
Sbjct: 524 AESKYWNEIIGGYVRALKW--KKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSG 581
Query: 493 SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRML 552
L +IYDRGL+G +HDWCE F TYPRTYD LHA +FS IE + C +L+EMDR+L
Sbjct: 582 PNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDFLHASGLFS-IERKRCEMSTILLEMDRIL 640
Query: 553 RPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKL 607
RP G IRD +++ I++ A+ GW + + + +S R+L +K+L
Sbjct: 641 RPGGRAYIRDSIDVMDEIQEITKAM---GWHTSLRDTSEGPHASY-RILTCEKRL 691
|
|
| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
Identities = 239/563 (42%), Positives = 337/563 (59%)
Query: 60 TFGRNRDFDDLFEDQELNPEVPKSI---PICDMRYSELIPCLDRNLIYQLKLKPNLSLME 116
T G +F+ +D + S+ IC +E IPCLD + +K + + E
Sbjct: 122 TLGNQTEFESSDDDDIKSTTARVSVRKFEICSENMTEYIPCLDN--VEAIKRLNSTARGE 179
Query: 117 HYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNG 176
+ER+CP NC VP P+GY+ P+ WP SRDEVW N+PHT L E+K Q+W+
Sbjct: 180 RFERNCPNDGMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDKGGQNWIYKEN 239
Query: 177 EKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH 236
+K FPGGGT F GAD+Y+ +++M+ P ++ G + R VLD+GCGVASFGAYL+S
Sbjct: 240 DKFKFPGGGTQFIHGADQYLDQISQMI--PD--ISFGNHTRVVLDIGCGVASFGAYLMSR 295
Query: 237 DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 296
+++ MS+AP DVHENQIQFALERG+P+ + T+RL YPS++F+L HCSRCRI+W + D
Sbjct: 296 NVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDD 355
Query: 297 GIXXXXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWA 356
GI GGYFV+++ Y H+ W M +L +CW +V K+ IW
Sbjct: 356 GILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIWQ 415
Query: 357 KPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARL 416
KP++N+CYL R G PPLC+S+DDPD W V +KACI+ + G L PWPARL
Sbjct: 416 KPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIEENGY---GANLAPWPARL 472
Query: 417 TAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQM-----KTVAQKNT-FRNVMDMNSNL 470
PP RL+ + + + +++ + + + YWK++ + K RNV+DM +
Sbjct: 473 LTPPDRLQTIQIDSYIARKELFVAESK---YWKEIISNYVNALHWKQIGLRNVLDMRAGF 529
Query: 471 GGFAAALKDK--DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAW 528
GGFAAAL + D WV+NV PV L +IYDRGL+G +HDWCE F TYPRTYDLLHA
Sbjct: 530 GGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHAA 589
Query: 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEP 588
+FS IE + C+ +++EMDR+LRP G V IRD ++ + +++ A++W L E
Sbjct: 590 GLFS-IERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHTSLRETAE 648
Query: 589 RIDALSSSEERVLIAKKKLWDEE 611
S RVL+ +K+ E
Sbjct: 649 G----PHSSYRVLLCEKRFESSE 667
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
Identities = 236/546 (43%), Positives = 336/546 (61%)
Query: 72 EDQELNPEVP---KSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERR 128
E++E +PEV + + +CD + IPCLD ++K N E+YERHCP ++
Sbjct: 129 EEKE-SPEVGFQIEKLKLCDKTKIDYIPCLDNE--EEIKRLNNTDRGENYERHCP--KQS 183
Query: 129 YNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHF 188
+CL+PPP GYK P++WP SRD++W N+PHT L E+K Q+W+ +K FPGGGT F
Sbjct: 184 LDCLIPPPDGYKKPIQWPQSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFVFPGGGTQF 243
Query: 189 HDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDV 248
GAD+Y+ +++M+ P + G R LD+GCGVASFGA+L+ + +S+AP DV
Sbjct: 244 IHGADQYLDQISQMI--PD--ITFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVAPKDV 299
Query: 249 HENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXX 308
HENQIQFALERG+P+ + V T+RL YPS+SFE+ HCSRCRI+W + DGI
Sbjct: 300 HENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLR 359
Query: 309 PGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRV 368
GGYFV+++ Y H+ + W M DL +CW+++ K+ +W KP++NSCY+ R
Sbjct: 360 AGGYFVWAAQPVYKHEDNLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCYVSRE 419
Query: 369 PGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVG- 427
G++PPLC DDDPD W V MK CI+ + G + WPARL PP RL+ +
Sbjct: 420 AGTKPPLCRPDDDPDDVWYVDMKPCITRLPDNGY---GANVSTWPARLHDPPERLQSIQM 476
Query: 428 ---VTTEEFHE-DIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK--D 481
++ +E + + W V Y + + K RNV+DM + GGFAAAL D D
Sbjct: 477 DAYISRKEIMKAESRFWLEVVESYVRVFRWKEFK--LRNVLDMRAGFGGFAAALNDLGLD 534
Query: 482 VWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSF 541
WVMN+ PV L +IYDRGL G +HDWCE F TYPRTYDL+HA +FS +E++ C+
Sbjct: 535 CWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLFS-VEKKRCNI 593
Query: 542 EDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVL 601
++++EMDRMLRP G V IRD S+++ +++ A+ GW + V + +S R+L
Sbjct: 594 TNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAI---GWTAGVHDTGEGPHASV-RIL 649
Query: 602 IAKKKL 607
I K++
Sbjct: 650 ICDKRI 655
|
|
| TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 243/563 (43%), Positives = 338/563 (60%)
Query: 66 DFDDLFE-DQELNPEVPKSIPICDMRYSELIPCLDRNLIYQLKLKPNLSLMEHYERHCPP 124
DF+ + + ++ + K CDM SE PC DR + + + ++M++ ERHCP
Sbjct: 91 DFESHHKLELKITNQTVKYFEPCDMSLSEYTPCEDR----ERGRRFDRNMMKYRERHCPS 146
Query: 125 PERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGG 184
+ CL+PPP YKIP +WP SRD W NIPH L+ EK+ Q+W+ V GE+ FPGG
Sbjct: 147 KDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQNWIQVEGERFRFPGG 206
Query: 185 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLA 244
GT F GAD YI +AR++ P L +G IR +D GCGVASFGAYLL DI+AMS A
Sbjct: 207 GTMFPRGADAYIDDIARLI--P---LTDGA-IRTAIDTGCGVASFGAYLLKRDIVAMSFA 260
Query: 245 PNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXX 304
P D HE Q+QFALERG+P+ +G++G++RLPYP+R+F+LAHCSRC I W Q DG+
Sbjct: 261 PRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQNDGLYLTEVD 320
Query: 305 XXXXPGGYFVYSSP--------EAYAHDPEN-RRIWNAMYDLLKSMCWKIVSKKDQTVIW 355
PGGY++ S P + + E+ ++ +++ D +S+CWK V++K IW
Sbjct: 321 RVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCWKKVTEKGDLSIW 380
Query: 356 AKPISN-SCY-LKRVPGSRPPLCSSDDDPDVTWNVLMKACISPY-SAKMHHE-KGTGLVP 411
KPI++ C LKRV + PPLCS D PD W +++C++P A E G L
Sbjct: 381 QKPINHVECNKLKRVHKT-PPLCSKSDLPDFAWYKDLESCVTPLPEANSSDEFAGGALED 439
Query: 412 WPARLTAPPPRLEEVG-----VTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDM 466
WP R A PPR+ +G + E+F ED +W+ R+ Y+KQ+ + FRN+MDM
Sbjct: 440 WPNRAFAVPPRI--IGGTIPDINAEKFREDNEVWKERI-SYYKQIMPELSRGRFRNIMDM 496
Query: 467 NSNLGGFAAALKDKDVWVMNVAPVRMSAR-LKIIYDRGLIGTVHDWCESFSTYPRTYDLL 525
N+ LGGFAAA+ WVMNV PV + L +I++RG IGT DWCE FSTYPRTYDL+
Sbjct: 497 NAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQDWCEGFSTYPRTYDLI 556
Query: 526 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSE 585
HA +FS E R C +L+EMDR+LRPEG V+ RD ++ I+ ++W + +
Sbjct: 557 HAGGLFSIYENR-CDVTLILLEMDRILRPEGTVVFRDTVEMLTKIQSITNGMRWKSRILD 615
Query: 586 VEPRIDALSSSEERVLIAKKKLW 608
E + E++L+A K W
Sbjct: 616 HERG----PFNPEKILLAVKSYW 634
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8VZV7 | PMT9_ARATH | 2, ., 1, ., 1, ., - | 0.7524 | 0.9788 | 0.9836 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 615 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-08 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 2e-04 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 2e-04 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 828 bits (2140), Expect = 0.0
Identities = 288/517 (55%), Positives = 351/517 (67%), Gaps = 15/517 (2%)
Query: 93 ELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEV 152
+ IPCLD + + L + MEH ERHCPP E + CLVPPP GYK P+ WP SRD+V
Sbjct: 1 DYIPCLDNDRAIKFLL--SRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKV 58
Query: 153 WKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNN 212
W AN+PHT LAEEK Q+W+ V G+K FPGGGT F GAD YI LA+M+
Sbjct: 59 WYANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDI----AW 114
Query: 213 GGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR 272
GG +R LDVGCGVASFGAYLLS D++ MS AP DVHE Q+QFALERG+P+ LGVLGT+R
Sbjct: 115 GGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRR 174
Query: 273 LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN-RRIW 331
LPYPSRSF++AHCSRC I W DGILLLE+DR+LRPGGYFV S P YA D E+ + W
Sbjct: 175 LPYPSRSFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVYARDEEDLQEEW 234
Query: 332 NAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMK 391
AM L KS+CWK+V+KK IW KP++NSCY KR PG +PPLC DDPD W V M+
Sbjct: 235 KAMEALAKSLCWKLVAKKGDIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPME 294
Query: 392 ACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEV---GVTTEEFHEDIGIWQVRVVDYW 448
ACI+P H G L WP RLTA PPRL GV+ E F D +W+ RV Y
Sbjct: 295 ACITPLPEVSHEVGGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRRVSKYK 354
Query: 449 KQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTV 508
+ +K + K RNVMDMN+ GGFAAAL D VWVMNV PV L +IYDRGLIG
Sbjct: 355 RLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDSPDTLPVIYDRGLIGIY 414
Query: 509 HDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIIN 568
HDWCE FSTYPRTYDLLHA +FS ++R C+ ED+L+EMDR+LRP G VIIRD +++
Sbjct: 415 HDWCEPFSTYPRTYDLLHADHLFSLYKKR-CNLEDILLEMDRILRPGGAVIIRDDVDVLD 473
Query: 569 YIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKK 605
++K A++W+ +++ E E++LIA+K
Sbjct: 474 KVKKIAKAMRWEVRITDTEDG----PHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-08
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 220 LDVGCGVASFGAYL---LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPY 275
LDVGCG L + + D+ + A +R V+G + LP+
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGV-----DLSPEMLALARKRAPRKF--VVGDAEDLPF 53
Query: 276 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 314
P SF++ S + L L E+ R+L+PGG V
Sbjct: 54 PDESFDVVVSSLV-LHHLPDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 16/104 (15%)
Query: 220 LDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER------GIPSTLGVLG 269
LD+GCG + LL + + D+ ++ A ER + +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGV-----DISPAALEAAAERLAALGLLDAVRVRLDV 55
Query: 270 TKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF 313
+ SF++ S + L +L L RLL+PGG
Sbjct: 56 LDAIDLDPGSFDVVVASNV-LHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPS 277
VLD+GCG LL ND+ + A + + + G ++LP
Sbjct: 38 VLDIGCGTGYLTRALLKR-FPQAEFIANDISAGMLAQAKTKLSENVQFICGDAEKLPLED 96
Query: 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317
SF+L + + W L EL R+L+PGG +S+
Sbjct: 97 SSFDLIVSNLA-LQWCDDLSQALSELARVLKPGGLLAFST 135
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 615 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.7 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.62 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.58 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.57 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.56 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.55 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.48 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.47 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.45 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.44 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.42 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.42 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.38 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.37 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.35 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.32 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.31 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.3 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.3 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.3 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.3 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.29 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.27 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.27 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.26 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.25 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.24 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.24 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.24 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.24 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.22 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.21 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.2 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.2 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.19 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.16 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.15 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.15 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.14 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.14 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.13 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.12 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.09 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.09 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.09 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.09 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.06 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.04 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.04 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.0 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.0 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.0 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.98 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.98 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.97 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.97 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.96 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.94 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.91 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.9 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.89 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.89 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.89 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.88 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.88 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.86 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.85 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.85 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.83 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.82 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.8 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.8 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.79 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.79 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.77 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.77 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.77 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.75 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.75 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.75 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.74 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.73 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.73 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.72 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.71 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.71 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.7 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.7 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.69 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.69 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.68 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.68 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.67 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.66 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.66 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.64 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.57 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.57 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.57 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.56 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.54 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.53 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.52 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.51 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.48 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.46 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.45 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.43 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.42 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.42 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.42 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.41 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.41 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.4 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.39 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.34 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.34 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.32 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.31 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.29 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.28 | |
| PLN02366 | 308 | spermidine synthase | 98.27 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.27 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.26 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.26 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.25 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.23 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.23 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.22 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.21 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.2 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.19 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.16 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.16 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.15 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.14 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.11 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.1 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.08 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.08 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.04 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.04 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.02 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.01 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.0 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 97.96 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.9 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.89 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.88 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 97.88 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.86 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.85 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.83 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 97.81 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.79 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.78 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.76 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.75 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.72 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.72 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.72 | |
| PLN02476 | 278 | O-methyltransferase | 97.71 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.69 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.67 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.67 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.65 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.65 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.6 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.56 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.56 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.55 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.52 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.46 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.43 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.4 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.4 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.39 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.39 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.37 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.36 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 97.3 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.3 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.29 | |
| PLN02823 | 336 | spermine synthase | 97.26 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.24 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.11 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.1 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.07 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.06 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.05 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.0 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.99 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.98 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 96.97 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 96.91 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 96.84 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.8 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.78 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 96.71 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.56 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.55 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 96.52 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.48 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 96.47 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.44 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 96.35 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.34 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.31 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.3 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.28 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.27 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 96.23 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.2 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.19 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.16 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.15 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 96.12 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.09 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.06 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 95.89 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 95.86 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 95.84 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 95.73 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.72 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 95.72 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.7 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 95.62 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 95.58 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.57 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 95.56 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 95.49 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.42 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 95.4 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 95.4 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.29 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 95.29 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.28 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 95.18 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 95.1 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 95.07 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.04 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 95.02 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 94.99 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 94.91 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.87 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.72 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 94.7 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 94.68 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 94.54 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 94.51 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 94.49 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 94.47 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 94.45 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 94.29 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 94.19 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 94.12 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 94.07 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 94.03 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 93.97 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 93.85 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 93.78 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 93.64 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 93.63 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 93.59 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 93.5 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 93.3 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 93.13 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 93.12 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 92.89 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 92.88 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 92.87 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 92.77 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 92.68 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 92.68 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 92.61 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 92.55 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 92.48 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 92.13 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 92.06 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.91 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 91.75 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 91.73 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 91.72 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 91.7 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 91.64 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 91.44 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 91.36 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 91.16 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 91.13 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 91.04 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 90.86 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 90.57 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 90.53 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 90.29 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 90.29 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 90.29 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 90.24 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 89.87 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 89.81 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 89.75 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 89.71 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 89.62 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 89.48 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 89.38 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 89.31 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 89.27 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 89.19 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 88.79 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 88.69 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 88.5 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 88.38 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 88.29 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 88.22 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 88.08 | |
| PRK04266 | 226 | fibrillarin; Provisional | 88.05 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 87.98 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 87.81 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 87.58 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 87.51 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 87.39 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 86.82 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 86.32 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 86.09 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 86.06 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 85.7 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 85.64 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 85.02 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 85.0 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 84.75 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 84.7 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 84.38 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 83.79 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 83.72 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 83.16 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 82.83 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 81.85 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 81.82 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 80.34 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-164 Score=1311.44 Aligned_cols=502 Identities=55% Similarity=1.032 Sum_probs=478.3
Q ss_pred CcccCCChhHHhhhhcCCCcccccccccCCCCCCCCCCcccCCCCCCCCCCCCCCccccccccCCCCCcccccccccccc
Q 007165 93 ELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWM 172 (615)
Q Consensus 93 ~~~pc~d~~~~~~~~~~~~~~~~~~~er~Cp~~~~~~~Clvp~P~~Y~~P~~WP~s~d~~W~~nv~~~~L~~~k~~q~Wv 172 (615)
|||||+|+.++.+. +.++++|+|||||||+.+++++||||+|++|+.||+||+|||++|++|++|++|+++|+.|||+
T Consensus 1 dy~PC~D~~~~~~~--~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv 78 (506)
T PF03141_consen 1 DYIPCLDNSRAIKF--LLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWV 78 (506)
T ss_pred CCcCCCCHHHHHhh--ccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccce
Confidence 79999999986443 3589999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHH
Q 007165 173 VVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQ 252 (615)
Q Consensus 173 ~~~g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~ 252 (615)
+.+|+.|.|||||++|.+|+.+|++.+.++++.. ..++..+++||||||+|+|+++|++++|+++++++.|.++++
T Consensus 79 ~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~----~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~q 154 (506)
T PF03141_consen 79 RVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLI----KWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQ 154 (506)
T ss_pred eecCCEEEeCCCCccccCCHHHHHHHHHHHhhcc----ccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchh
Confidence 9999999999999999999999999999999853 345778999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCC-CChhHHHHH
Q 007165 253 IQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIW 331 (615)
Q Consensus 253 i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~-~~~e~~~~w 331 (615)
+|+|.+||+++.+.+...++|||++++||+|||++|.+.|.++.+.+|.|++|+|||||+|+++.|+.+. .+++..++|
T Consensus 155 vqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~ 234 (506)
T PF03141_consen 155 VQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEW 234 (506)
T ss_pred hhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHH
Confidence 9999999999999988899999999999999999999999999999999999999999999999999984 455667899
Q ss_pred HHHHHHHhhcceEEEEeeCceEEEeccCCcccccccCCCCCCCCCCCCCCCCccccccccccccccccccccccCCCCCC
Q 007165 332 NAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 411 (615)
Q Consensus 332 ~~l~~La~~l~W~l~~~~~~~aiwqKP~~~~c~~~r~~~~~P~lC~~~~~pd~~wy~~l~~Ci~~~~~~~~~~~~~~~~~ 411 (615)
++|++++++|||++++++++++|||||.+++||.+|+....||+|+++++||++||++|++|||++|+..+..+++++++
T Consensus 235 ~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~ 314 (506)
T PF03141_consen 235 NAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPK 314 (506)
T ss_pred HHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCC
Confidence 99999999999999999999999999999999999998899999999999999999999999999999876667899999
Q ss_pred CCCCcCCCCCCccc---cCCChhhhhhhHhhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCCCcEEEEec
Q 007165 412 WPARLTAPPPRLEE---VGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVA 488 (615)
Q Consensus 412 wp~rl~~~p~~~~~---~g~~~~~~~~d~~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvv 488 (615)
||+||+++|+||++ .|+++|+|++|+++|+++|++||++++..+++++|||||||||+||||||||+++||||||||
T Consensus 315 WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVV 394 (506)
T PF03141_consen 315 WPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVV 394 (506)
T ss_pred ChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEec
Confidence 99999999999998 799999999999999999999999998789999999999999999999999999999999999
Q ss_pred cCCCCCchhHHhhcccccccccccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcChhHHH
Q 007165 489 PVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIIN 568 (615)
Q Consensus 489 p~~~~~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~~~~ 568 (615)
|+.++|||+|||||||||+||||||+|||||||||||||++||| .+++||+|+||||||||||||||+|||||++++|+
T Consensus 395 P~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs-~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~ 473 (506)
T PF03141_consen 395 PVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFS-LYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLE 473 (506)
T ss_pred ccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhh-hhcccccHHHHHHHhHhhcCCCceEEEeccHHHHH
Confidence 99999999999999999999999999999999999999999999 56678999999999999999999999999999999
Q ss_pred HHHHHHhhcCccceeeccccccCcCCCCCceEEEEEe
Q 007165 569 YIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKK 605 (615)
Q Consensus 569 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~l~~~k 605 (615)
+|++|+++|||+++ ++|+|+++ .++||||||||
T Consensus 474 ~v~~i~~~lrW~~~--~~d~e~g~--~~~EkiL~~~K 506 (506)
T PF03141_consen 474 KVKKIAKSLRWEVR--IHDTEDGP--DGPEKILICQK 506 (506)
T ss_pred HHHHHHHhCcceEE--EEecCCCC--CCCceEEEEEC
Confidence 99999999999994 67888877 56899999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-17 Score=179.49 Aligned_cols=152 Identities=22% Similarity=0.397 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHhhhccc----cCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhccc---cccccc
Q 007165 439 IWQVRVVDYWKQMKTVA----QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL---IGTVHD 510 (615)
Q Consensus 439 ~W~~~v~~y~~~l~~~~----~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGl---iG~~hd 510 (615)
.++.-+++|-..|...+ ..+.||-++|..+|.|+|||.|.++.|-+|...|.+. ++...++.|||+ ||++-.
T Consensus 93 ~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s 172 (506)
T PF03141_consen 93 MFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGS 172 (506)
T ss_pred cccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhcc
Confidence 34445566654444333 5599999999999999999999999999999999976 489999999996 677655
Q ss_pred ccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEE----------cChhHHHHHHHHHhhcCcc
Q 007165 511 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR----------DKSSIINYIRKFITALKWD 580 (615)
Q Consensus 511 wce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir----------d~~~~~~~~~~~~~~~~w~ 580 (615)
---||+. |+|||+|++++......+ -..+|+|+||||||||++|+. |..+..+++++++++|+|+
T Consensus 173 ~rLPfp~--~~fDmvHcsrc~i~W~~~---~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~ 247 (506)
T PF03141_consen 173 QRLPFPS--NAFDMVHCSRCLIPWHPN---DGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWK 247 (506)
T ss_pred ccccCCc--cchhhhhcccccccchhc---ccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5666665 999999999999976655 256999999999999999986 3467899999999999999
Q ss_pred ceeeccccccCcCCCCCceEEEEEecc
Q 007165 581 GWLSEVEPRIDALSSSEERVLIAKKKL 607 (615)
Q Consensus 581 ~~~~~~~~~~~~~~~~~e~~l~~~k~~ 607 (615)
.- ..+..+-|.||+.
T Consensus 248 ~v------------a~~~~~aIwqKp~ 262 (506)
T PF03141_consen 248 KV------------AEKGDTAIWQKPT 262 (506)
T ss_pred Hh------------eeeCCEEEEeccC
Confidence 71 1234599999974
|
; GO: 0008168 methyltransferase activity |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-15 Score=153.13 Aligned_cols=101 Identities=25% Similarity=0.328 Sum_probs=82.1
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCC-----CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI-----PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~-----~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
++.+|||||||||.++..+++..- ...+.+.|+++.|++.|+++.. .+.|.++|++.|||+|++||+|.+++ .
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f-g 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF-G 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee-h
Confidence 568899999999999999986511 2233344555555566655532 28899999999999999999999999 6
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+++++|.+++|+|+.|||||||.+++..
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 9999999999999999999999998866
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-15 Score=126.93 Aligned_cols=93 Identities=29% Similarity=0.488 Sum_probs=77.4
Q ss_pred EEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccccccccchH
Q 007165 220 LDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 297 (615)
Q Consensus 220 LDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~ 297 (615)
||+|||+|.++..|++. .+.++.+.|+++.+++.++++.. ...+...|...+|+++++||+|++.. +++|++++.
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~-~~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNS-VLHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEES-HGGGSSHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccccc-ceeeccCHH
Confidence 89999999999999976 45566666888888888887754 34589999999999999999999988 699889999
Q ss_pred HHHHHHHhccCCCeEEEE
Q 007165 298 ILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 298 ~~L~ei~RvLkPGG~Lvi 315 (615)
.+++|+.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=160.24 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=75.0
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCC--CCCCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTK--RLPYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~--~Lpfpd~sFDlV~~s~~ 288 (615)
..+|||||||+|.++..|++. .|+++|+++. +++.+++. ..++.+.++|+. .+++++++||+|+|..
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~-----~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~- 111 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAGQVIALDFIES-----VIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNW- 111 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHH-----HHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhh-
Confidence 468999999999999999864 5666655554 44444332 235678888874 5778889999999988
Q ss_pred ccccccch--HHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+++|+++. ..++.++.|+|||||++++.+.
T Consensus 112 ~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 112 LLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred hHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 58888764 5799999999999999999763
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-15 Score=150.10 Aligned_cols=102 Identities=24% Similarity=0.381 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
++.+|||+|||||.++..++++ .|+++|+++.++..+..+.......++.+.++|++.+|+++++||+|+|++ +
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f-g 125 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF-G 125 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES--
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh-h
Confidence 4568999999999999988754 455665555555444322222212378999999999999999999999999 6
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++.++|..+.++|+.|+|||||++++.+
T Consensus 126 lrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 126 LRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 9999999999999999999999999866
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-14 Score=141.71 Aligned_cols=202 Identities=20% Similarity=0.235 Sum_probs=150.9
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
...++|.|+|||+|..+..|+.+- .+..+++.|.|.+|++.|+++.+++.|..+|+..+. ++..+|+++++. ++||+
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNA-vlqWl 105 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANA-VLQWL 105 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhh-hhhhc
Confidence 345889999999999999998762 344566778899999999999999999999998886 568899999665 89999
Q ss_pred cchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEeeCceEEEeccCCc-ccccccCCCCC
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISN-SCYLKRVPGSR 372 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~~~~aiwqKP~~~-~c~~~r~~~~~ 372 (615)
+|-..+|..+...|.|||.|.+..|+++.... ...|.+.++...|......... .++|+.. +.|-.. -.
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPdN~deps-----H~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~Yy~l---La 175 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPDNLDEPS-----HRLMRETADEAPFAQELGGRGL--TRAPLPSPAAYYEL---LA 175 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCCccCchh-----HHHHHHHHhcCchhhhhCcccc--ccCCCCCHHHHHHH---hC
Confidence 99999999999999999999999999864433 4567788887777655444322 3566554 233211 12
Q ss_pred CCCCCCCCCCCccccccccccccccccccccccCCCCCCCCCCcCCCCCCccccCCChhhhhhhHhhHHHHHHHHHHhhh
Q 007165 373 PPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMK 452 (615)
Q Consensus 373 P~lC~~~~~pd~~wy~~l~~Ci~~~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~g~~~~~~~~d~~~W~~~v~~y~~~l~ 452 (615)
|.=|+ .+.+.+.||+.|..-- +-++++ +|+++.||=++| |.+.|+...+.|..+|+
T Consensus 176 ~~~~r-vDiW~T~Y~h~l~~a~---aIvdWv-kgTgLrP~L~~L-------------------~e~~~~~FL~~Y~~~l~ 231 (257)
T COG4106 176 PLACR-VDIWHTTYYHQLPGAD---AIVDWV-KGTGLRPYLDRL-------------------DEEERQRFLDRYLALLA 231 (257)
T ss_pred cccce-eeeeeeeccccCCCcc---chhhhe-eccccceecccc-------------------CHHHHHHHHHHHHHHHH
Confidence 33344 6889999998876432 122343 477788777776 35778888888987765
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-13 Score=140.28 Aligned_cols=102 Identities=23% Similarity=0.403 Sum_probs=85.3
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
...+|||+|||+|.++..+... +..+.+.|+++.+++.|+++.....+.++|.+.+|+++++||+|+++. +++|.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~~~ 117 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL-AVQWCG 117 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc-hhhhcC
Confidence 3568999999999999888754 234444566777778888776556788899999999999999999887 699999
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++..++.++.|+|+|||.++++++..
T Consensus 118 d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 118 NLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 99999999999999999999998654
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-13 Score=141.58 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=80.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHc--------CCCcEEEEecCCCCCCCCCCce
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER--------GIPSTLGVLGTKRLPYPSRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~er--------g~~~~~~v~d~~~Lpfpd~sFD 281 (615)
+..+|||+|||+|.++..+++. .|+|+|+++ .|++.|+++ ..++.+.++|++.+|+++++||
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~-----~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS-----EQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEe
Confidence 3468999999999998888753 456665555 454554433 2357889999999999999999
Q ss_pred EEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 282 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 282 lV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+|++++ ++|+++++..+++|+.|+|||||+|++.+..
T Consensus 148 ~V~~~~-~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 148 AITMGY-GLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred EEEEec-ccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 999988 6999999999999999999999999998754
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.9e-14 Score=139.92 Aligned_cols=104 Identities=20% Similarity=0.354 Sum_probs=87.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
.+.+|||||||.|.++..|+.. .|+|+|++...+..+. ..|.+.++.+.+....++++....++||+|+|.. +++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmE-VlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCME-VLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhh-HHHc
Confidence 3478999999999999999864 6777777666665554 4455667888888888888877678999999999 7999
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+++++.+++.+.+++||||.+++++++-
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 9999999999999999999999999874
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.5e-13 Score=142.55 Aligned_cols=103 Identities=20% Similarity=0.434 Sum_probs=82.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
++.+|||||||+|.++..|++. +|+++|+++.++..+. +.+.+.+. ++.+.++|+..+|+++++||+|++.. +
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~-~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~-~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARAN-ALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME-S 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC-c
Confidence 4578999999999999998864 5666666555443333 22333343 57899999999999999999999988 5
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++|+++...++.++.|+|||||+|++++..
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 888999999999999999999999998743
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-13 Score=125.30 Aligned_cols=111 Identities=32% Similarity=0.537 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCC
Q 007165 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL 273 (615)
Q Consensus 194 ~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~L 273 (615)
.+.+.+.++.+.. .+..+|||||||+|.++..|.+. +..+.+.|+++.+++. ........+....
T Consensus 8 ~~~~~~~~~~~~~-------~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----~~~~~~~~~~~~~ 72 (161)
T PF13489_consen 8 AYADLLERLLPRL-------KPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----RNVVFDNFDAQDP 72 (161)
T ss_dssp CHHHHHHHHHTCT-------TTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----TTSEEEEEECHTH
T ss_pred HHHHHHHHHhccc-------CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----hhhhhhhhhhhhh
Confidence 3445555555421 24578999999999999999765 2244455555555544 3344444444455
Q ss_pred CCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 274 PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 274 pfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.++++||+|+|+. +++|++++..+|+++.++|||||+++++++..
T Consensus 73 ~~~~~~fD~i~~~~-~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 73 PFPDGSFDLIICND-VLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HCHSSSEEEEEEES-SGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hccccchhhHhhHH-HHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 56789999999998 69999999999999999999999999999875
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-13 Score=137.39 Aligned_cols=101 Identities=21% Similarity=0.367 Sum_probs=81.4
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+..+|||||||+|.++..|+... .+..+.+.|+++.+++.|++++ +.+.++|++.++ ++++||+|+|+. ++||++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~~~ 103 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNA-ALQWVP 103 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEeh-hhhhCC
Confidence 34789999999999999988641 1234445566677778887764 567888888775 568999999988 699999
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++..++.++.++|||||++++..+..
T Consensus 104 d~~~~l~~~~~~LkpgG~l~~~~~~~ 129 (255)
T PRK14103 104 EHADLLVRWVDELAPGSWIAVQVPGN 129 (255)
T ss_pred CHHHHHHHHHHhCCCCcEEEEEcCCC
Confidence 99999999999999999999987654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.5e-13 Score=140.35 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=81.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----C--CCcEEEEecCCCCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g--~~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
.+.+|||||||+|.++..|+.. .|+|+|++ +.+++.|+++ + ..+.+.+++++.+++++++||+|+|.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s-----~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAV-----DKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEh
Confidence 3468999999999999988854 45566554 4455555432 2 25788888988999888999999999
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
. +++|++++..++.++.++|||||.+++++++.
T Consensus 206 ~-vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 206 E-VIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred h-HHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 8 79999999999999999999999999998754
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-12 Score=132.41 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=88.0
Q ss_pred ccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC---CCc
Q 007165 187 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPS 263 (615)
Q Consensus 187 ~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg---~~~ 263 (615)
.++.+.......+.+.+.+. +..+|||||||+|..+..++.. .+..+.+.|+++.+++.|+++. ..+
T Consensus 32 ~~~~gg~~~~~~~l~~l~l~--------~~~~VLDiGcG~G~~a~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~~~i 101 (263)
T PTZ00098 32 YISSGGIEATTKILSDIELN--------ENSKVLDIGSGLGGGCKYINEK--YGAHVHGVDICEKMVNIAKLRNSDKNKI 101 (263)
T ss_pred CCCCCchHHHHHHHHhCCCC--------CCCEEEEEcCCCChhhHHHHhh--cCCEEEEEECCHHHHHHHHHHcCcCCce
Confidence 34444444444455555432 3468999999999999888753 1234444556666666666552 357
Q ss_pred EEEEecCCCCCCCCCCceEEEeccccccccc--chHHHHHHHHhccCCCeEEEEEcCC
Q 007165 264 TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 264 ~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~--d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+...|+...|+++++||+|++..+ ++|.+ +...+++++.++|||||+|+++++.
T Consensus 102 ~~~~~D~~~~~~~~~~FD~V~s~~~-l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 102 EFEANDILKKDFPENTFDMIYSRDA-ILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEEECCcccCCCCCCCeEEEEEhhh-HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 8888998888999999999998774 55554 6788999999999999999998764
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-12 Score=129.96 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=83.4
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+..+|||||||+|.++..++... .+..+.+.|+++.+++.|+++..++.+..+|+..+. ++++||+|+++. ++||++
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~~~ 107 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANA-SLQWLP 107 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEcc-ChhhCC
Confidence 34789999999999999888541 123344446667777888777667888888887665 457999999988 699999
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
+...++.++.++|||||.|+++.|..+
T Consensus 108 d~~~~l~~~~~~LkpgG~~~~~~~~~~ 134 (258)
T PRK01683 108 DHLELFPRLVSLLAPGGVLAVQMPDNL 134 (258)
T ss_pred CHHHHHHHHHHhcCCCcEEEEECCCCC
Confidence 999999999999999999999877653
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=124.56 Aligned_cols=102 Identities=22% Similarity=0.335 Sum_probs=78.6
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
..+|||+|||+|.++..+++. .|+++|+++.++..+.... ...+. ++.+..+|...+++++++||+|++.. +
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~ 123 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKV-KDAGLHNVELVHGNAMELPFDDNSFDYVTIGF-G 123 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HhcCCCceEEEEechhcCCCCCCCccEEEEec-c
Confidence 468999999999999888753 4566665554443333221 12232 57788889888898889999999887 6
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+++.++...++.++.++|+|||++++.++.
T Consensus 124 l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 124 LRNVPDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred cccCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 899999999999999999999999987654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.7e-12 Score=126.42 Aligned_cols=102 Identities=23% Similarity=0.265 Sum_probs=85.3
Q ss_pred CCCeEEEECCCCchHHHHHhc----------CCCccccCChhchhHHHHHHHHHcCC----CcEEEEecCCCCCCCCCCc
Q 007165 215 NIRNVLDVGCGVASFGAYLLS----------HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSF 280 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~----------~~V~gvdis~~Dls~a~i~~A~erg~----~~~~~v~d~~~Lpfpd~sF 280 (615)
...++||++||||-.+..+.+ .+|+.+|+++.++..+. +.|.++++ .+.+..+|++.|||++.+|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 458999999999988887763 36778888887776665 45555554 2678999999999999999
Q ss_pred eEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 281 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 281 DlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
|+..+++ .+...+++.+.|+|++|+|||||+|.+..-
T Consensus 179 D~yTiaf-GIRN~th~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 179 DAYTIAF-GIRNVTHIQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred eeEEEec-ceecCCCHHHHHHHHHHhcCCCcEEEEEEc
Confidence 9999998 699999999999999999999999997653
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.9e-12 Score=118.70 Aligned_cols=101 Identities=23% Similarity=0.409 Sum_probs=78.0
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC--CCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp--fpd~sFDlV~~s~ 287 (615)
..+|||+|||+|.++..|++ .+++|+|+++.++..+. +.+.+.+. ++.+.+.|+.+++ ++ +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~-~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAK-KRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHH-HHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhh-cccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 47899999999999999983 24555555444443333 22223455 5899999988887 66 8999999887
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++++..++..+++++.++|++||.++++.+.
T Consensus 82 -~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 -VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 6899999999999999999999999998865
|
... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7e-12 Score=129.82 Aligned_cols=97 Identities=27% Similarity=0.443 Sum_probs=77.9
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
..+|||+|||+|.++..+++. ...+..+.+.|+++.+++.|+++..++.+.++|+..+|+++++||+|++..+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-----
Confidence 367999999999999988753 1112345566777888888888877889999999999999999999997652
Q ss_pred cchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
...+.++.|+|||||+|++..|..
T Consensus 161 ---~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 ---PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ---CCCHHHHHhhccCCCEEEEEeCCC
Confidence 124689999999999999998765
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-12 Score=128.67 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=78.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCC-CCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP-YPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lp-fpd~sFDlV~~s~~~ 289 (615)
...+|||+|||+|.++..|+.. +|+++|+++.++..+. +.+.+.+. ++.+.++|+..++ +++++||+|+|.. +
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~-~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~-v 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAK-QAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA-V 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh-H
Confidence 3468999999999999999865 4556655554443333 22222343 4678888877664 6678999999988 6
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++|+.++..++.++.++|||||++++...+.
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 9999999999999999999999999887553
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-11 Score=120.31 Aligned_cols=103 Identities=24% Similarity=0.374 Sum_probs=82.8
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC-CCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg-~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
..+|||+|||+|.++..+++.. ....+.+.|+++.+++.++++. .++.+..+|...+++++++||+|++.. ++||..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~-~l~~~~ 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNL-ALQWCD 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhh-hhhhcc
Confidence 3689999999999999888642 1223444466666666666653 256788899989998889999999988 699999
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++..++.++.++|+|||.++++++..
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99999999999999999999988654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.2e-12 Score=126.60 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=73.8
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d 295 (615)
..+|||||||+|.++..+++.. +..+.+.|+++.|++.|+++. .+.++|++.+|+++++||+|++++ ++|+.++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~-~l~~~~d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSF-ALHASDN 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecC-hhhccCC
Confidence 4689999999999999988651 234455566777777777653 356789999999999999999998 6899999
Q ss_pred hHHHHHHHHhccCCCe
Q 007165 296 DGILLLELDRLLRPGG 311 (615)
Q Consensus 296 ~~~~L~ei~RvLkPGG 311 (615)
++.+++|+.|+|||.+
T Consensus 126 ~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 126 IEKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHHhcCce
Confidence 9999999999999953
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=109.94 Aligned_cols=101 Identities=23% Similarity=0.320 Sum_probs=72.1
Q ss_pred CCeEEEECCCCchHHHHHhc--C--CCccccCChhchhHHHHHHHH-HcCCCcEEEEecC-CCCCCCCCCceEEEecc-c
Q 007165 216 IRNVLDVGCGVASFGAYLLS--H--DIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGT-KRLPYPSRSFELAHCSR-C 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~--~--~V~gvdis~~Dls~a~i~~A~-erg~~~~~~v~d~-~~Lpfpd~sFDlV~~s~-~ 288 (615)
..+|||||||+|.++..+++ . +|+++|+++..+..++..... ....++.+...|+ ...... ..||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCc
Confidence 46899999999999999987 2 667776666655544433312 1235788999988 333333 5699999987 3
Q ss_pred ccccc--cchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWL--QRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~--~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
..++. ++...+++++.+.|+|||+|++++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22122 445779999999999999999975
|
... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.4e-11 Score=120.62 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=74.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC------CCccccCChhchhHHHHHHHHHc------CCCcEEEEecCCCCCCCCCCceE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKRLPYPSRSFEL 282 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~------~V~gvdis~~Dls~a~i~~A~er------g~~~~~~v~d~~~Lpfpd~sFDl 282 (615)
+..+|||+|||+|.++..+++. +++++|+ ++.+++.|+++ ..++.+..+|...++++ .+|+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~-----s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~ 125 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDN-----SQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASM 125 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeC-----CHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCE
Confidence 3467999999999998888653 3555555 44555555433 23578889999888875 4899
Q ss_pred EEecccccccccc--hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 283 AHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 283 V~~s~~~l~~~~d--~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
|+++. ++||+++ ...+++++.|+|+|||.|+++++..
T Consensus 126 v~~~~-~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 126 VILNF-TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred Eeeec-chhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 99888 6888754 4679999999999999999998643
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.9e-11 Score=119.39 Aligned_cols=118 Identities=27% Similarity=0.353 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----CCCcEEEEe
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVL 268 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~ 268 (615)
..|.+.+.+.+.+ .+..+|||+|||+|.++..++...-....+.+.|+++.+++.++++ +..+.+...
T Consensus 5 ~~~~~~~~~~~~~--------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~ 76 (241)
T PRK08317 5 RRYRARTFELLAV--------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG 76 (241)
T ss_pred HHHHHHHHHHcCC--------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec
Confidence 3444455555543 2346899999999999988875310112233334555555555544 345788888
Q ss_pred cCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 269 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 269 d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|...+++++++||+|++.. ++++..++..++.++.++|+|||++++..+.
T Consensus 77 d~~~~~~~~~~~D~v~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 77 DADGLPFPDGSFDAVRSDR-VLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ccccCCCCCCCceEEEEec-hhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 8888888889999999988 5999999999999999999999999998764
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-11 Score=130.62 Aligned_cols=100 Identities=23% Similarity=0.250 Sum_probs=78.7
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHH-HcCCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~-erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+++|||||||+|.++..+++. .|+|+|.++.++......... ....++.+..++++.+|+ +++||+|+|.. +++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~-vl~ 200 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMG-VLY 200 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECC-hhh
Confidence 478999999999999988764 477887776655332211111 113467888889999998 78999999887 689
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEc
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
|..++..+|++++++|+|||.|++.+
T Consensus 201 H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 201 HRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999999999999999875
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-11 Score=119.96 Aligned_cols=98 Identities=19% Similarity=0.342 Sum_probs=73.8
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
..+|||+|||+|.++.+|+++ .|+++|+++.++..+. +.+.+.++++.+.+.|....+++ ++||+|+++. ++|++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~~~~ 107 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVL-DMKARENLPLRTDAYDINAAALN-EDYDFIFSTV-VFMFL 107 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHhCCCceeEeccchhcccc-CCCCEEEEec-ccccC
Confidence 357999999999999999865 5777777665554443 33445566777777787666654 6899999888 57776
Q ss_pred c--chHHHHHHHHhccCCCeEEEEE
Q 007165 294 Q--RDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 294 ~--d~~~~L~ei~RvLkPGG~Lvis 316 (615)
+ +...++.++.++|+|||++++.
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4 3467999999999999996654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-11 Score=133.94 Aligned_cols=102 Identities=28% Similarity=0.420 Sum_probs=80.2
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----CCCcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
+..+|||||||+|..+..|+... +..+.+.|+++.+++.|+++ ..++.+.++|...+++++++||+|+|.. ++
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~-~l 342 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD-TI 342 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECC-cc
Confidence 45789999999999888887541 22334445555555555443 3357888999988899889999999888 58
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+|++++..++.++.|+|||||.|+++++.
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 89999999999999999999999998754
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-11 Score=119.83 Aligned_cols=98 Identities=19% Similarity=0.367 Sum_probs=73.1
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
..+|||+|||+|.++.+|+++ +|+++|+++.++..+.. .+.+.+. ++.+.+.|...++++ ++||+|+|+. ++||
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~~~ 107 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLER-IKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTV-VLMF 107 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHHHcCCCcceEEecChhhCCcC-CCcCEEEEec-chhh
Confidence 367999999999999999875 56677666655544432 2333444 367788888777765 6799999988 5777
Q ss_pred cc--chHHHHHHHHhccCCCeEEEEE
Q 007165 293 LQ--RDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 293 ~~--d~~~~L~ei~RvLkPGG~Lvis 316 (615)
++ +...++.++.++|||||++++.
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 65 3467999999999999996553
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-12 Score=110.75 Aligned_cols=93 Identities=28% Similarity=0.493 Sum_probs=68.8
Q ss_pred EEEECCCCchHHHHHhcCC--CccccCChhchhHHHHHHHHHc----CCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 219 VLDVGCGVASFGAYLLSHD--IIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 219 VLDIGCGtG~~a~~L~~~~--V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
|||+|||+|..+..+...- -....+.+.|+++.+++.++++ +.++.+.++|+..+++.+++||+|+|+.++++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999998887431 0113444445566666666554 478999999999999888999999997766888
Q ss_pred ccch--HHHHHHHHhccCCCe
Q 007165 293 LQRD--GILLLELDRLLRPGG 311 (615)
Q Consensus 293 ~~d~--~~~L~ei~RvLkPGG 311 (615)
+.+. ..+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 7654 579999999999998
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=123.76 Aligned_cols=131 Identities=17% Similarity=0.126 Sum_probs=91.1
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC--CCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+..+|||||||+|.++..+++.. .+..+.+.|.++.+++.|+++. .++.+..+|.+.+++++++||+|+++. ++++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~-~L~~ 190 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAG-SIEY 190 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcC-hhhh
Confidence 34689999999999888876531 1123334455555666665542 356788899999999999999999887 6899
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEcCCC---CCCChhHHH------HHHHHHHHHhhcceEEEEe
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSSPEA---YAHDPENRR------IWNAMYDLLKSMCWKIVSK 348 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~P~~---~~~~~e~~~------~w~~l~~La~~l~W~l~~~ 348 (615)
.+++..+++++.|+|||||.+++..+.. +.. ..... .-+++.+++++.+|+.+..
T Consensus 191 ~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~-r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 191 WPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLS-RFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHH-HHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 9999999999999999999999876432 110 00011 1245556677777766543
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=119.53 Aligned_cols=100 Identities=18% Similarity=0.240 Sum_probs=72.9
Q ss_pred CCeEEEECCCCchHHHHHhc------CCCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~------~~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
..+|||||||+|..+..++. .+++++|+++.++..+..+.. ..+. ++.+.++|+..+|++ .+|+|+++.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~-~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHID-AYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHH-hcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 46899999999999887764 245666555554444332222 1222 578888898888765 499999887
Q ss_pred cccccccch--HHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 CRIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++||+++. ..+++++.++|||||.|++++..
T Consensus 134 -~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 134 -TLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred -HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 58887643 56999999999999999998744
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.7e-12 Score=111.11 Aligned_cols=93 Identities=26% Similarity=0.398 Sum_probs=53.8
Q ss_pred EEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC-C-CCCCceEEEecccccccc
Q 007165 220 LDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 220 LDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp-f-pd~sFDlV~~s~~~l~~~ 293 (615)
||||||+|.++..+.+. +++++|+++.++..+..++.............+..... . ..++||+|+++. ++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~-vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASN-VLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE--TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhh-hHhhh
Confidence 79999999998888654 67788887777744443333322223333333332222 1 226999999998 79999
Q ss_pred cchHHHHHHHHhccCCCeEE
Q 007165 294 QRDGILLLELDRLLRPGGYF 313 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~L 313 (615)
+++..+++.+.++|||||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.5e-11 Score=122.74 Aligned_cols=102 Identities=21% Similarity=0.259 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
++.+|||||||+|..+..++.. +|+++|+++.++..+.. .+...+. ++.+..+|.+.+++++++||+|++..
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~-~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~- 154 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARA-NARKAGYTNVEFRLGEIEALPVADNSVDVIISNC- 154 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH-HHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC-
Confidence 4578999999999876655432 46677665554443332 2222333 57788889999999889999999765
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
++++.++...++.++.|+|||||+|++++.
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 799999999999999999999999999764
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-11 Score=117.04 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=79.8
Q ss_pred CeEEEECCCCchHHHHHhc---CCCccccCChhchhHHHHHHHHHcCCCcE-EEEecCCCCC-CCCCCceEEEecccccc
Q 007165 217 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLP-YPSRSFELAHCSRCRID 291 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~---~~V~gvdis~~Dls~a~i~~A~erg~~~~-~~v~d~~~Lp-fpd~sFDlV~~s~~~l~ 291 (615)
..||+||||||..-.++.. ..|+++|.++.+-+-+...++.++..++. |++++.+++| ++++++|.|+|.. ++-
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl-vLC 156 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL-VLC 156 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE-EEe
Confidence 4589999999977666652 25667766665554444444444556666 8999999999 8999999999998 487
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
-..++.+.|+|+.|+|||||.+++....
T Consensus 157 Sve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 8899999999999999999999997643
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.9e-11 Score=125.02 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=75.4
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+++|||||||+|.++..++.. .|+|+|.++.++... +.++.. ...+.+...+.+.+|.. .+||+|+|+. +
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g-v 197 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMG-V 197 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcc-h
Confidence 478999999999998887754 467777666554322 122221 23466777788888864 5899999988 6
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
++|.+++..+|.+++|+|||||.|++.+.
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 88999999999999999999999998753
|
Known examples to date are restricted to the proteobacteria. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-10 Score=111.85 Aligned_cols=116 Identities=20% Similarity=0.175 Sum_probs=85.5
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
+.+|||+|||+|.++..++. ..|+++|.++.++..+. +.+++.+. ++.+..+|...++. +++||+|+|..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~-~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~--- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR-EVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA--- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc---
Confidence 47899999999998887763 36777776666555444 33334454 47888899888776 67999999754
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
..+...++.++.++|||||+|++..+... -..+..+++..+|.+..
T Consensus 121 --~~~~~~~l~~~~~~LkpGG~lv~~~~~~~---------~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 121 --VASLSDLVELCLPLLKPGGRFLALKGRDP---------EEEIAELPKALGGKVEE 166 (187)
T ss_pred --ccCHHHHHHHHHHhcCCCeEEEEEeCCCh---------HHHHHHHHHhcCceEee
Confidence 24567899999999999999999875431 23466777878887654
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=120.53 Aligned_cols=132 Identities=15% Similarity=0.247 Sum_probs=86.8
Q ss_pred CCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCch----HHHHHhcCC----CccccCChhchhHHHHHHH
Q 007165 185 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVAS----FGAYLLSHD----IIAMSLAPNDVHENQIQFA 256 (615)
Q Consensus 185 g~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~----~a~~L~~~~----V~gvdis~~Dls~a~i~~A 256 (615)
.+.|.+...++......+++..... ....+..+|||+|||+|. ++..|++.. .....+.+.|+++.+++.|
T Consensus 70 ~T~FfR~~~~~~~l~~~vlp~l~~~-~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~A 148 (264)
T smart00138 70 ETRFFRESKHFEALEEKVLPLLIAS-RRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKA 148 (264)
T ss_pred CCcccCCcHHHHHHHHHHhHHHHHh-cCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHH
Confidence 3455555555554433333311101 112234789999999995 444444321 1134556667777777777
Q ss_pred HHcC--------------------------------CCcEEEEecCCCCCCCCCCceEEEecccccccccch--HHHHHH
Q 007165 257 LERG--------------------------------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLE 302 (615)
Q Consensus 257 ~erg--------------------------------~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~--~~~L~e 302 (615)
++.- ..+.|.+.|+...++++++||+|+|.+ +++|++++ ..++.+
T Consensus 149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn-vl~yf~~~~~~~~l~~ 227 (264)
T smart00138 149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRN-VLIYFDEPTQRKLLNR 227 (264)
T ss_pred HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEech-hHHhCCHHHHHHHHHH
Confidence 6531 146788899888887789999999988 57787644 579999
Q ss_pred HHhccCCCeEEEEEcC
Q 007165 303 LDRLLRPGGYFVYSSP 318 (615)
Q Consensus 303 i~RvLkPGG~Lvis~P 318 (615)
+.++|+|||+|++...
T Consensus 228 l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 228 FAEALKPGGYLFLGHS 243 (264)
T ss_pred HHHHhCCCeEEEEECc
Confidence 9999999999999653
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-10 Score=121.61 Aligned_cols=98 Identities=18% Similarity=0.368 Sum_probs=74.1
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
.+|||+|||+|.++.+|+.. +|+++|+++..+..+. +.+.+.++++.+...|....++ +++||+|++.. +++++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~-vl~~l~ 198 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTV-VLMFLN 198 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcc-hhhhCC
Confidence 47999999999999999864 5666666655544333 3445557778888888776655 58899999887 588775
Q ss_pred --chHHHHHHHHhccCCCeEEEEEc
Q 007165 295 --RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 295 --d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+...+++++.++|+|||++++..
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44679999999999999977643
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.5e-11 Score=121.80 Aligned_cols=98 Identities=22% Similarity=0.417 Sum_probs=67.4
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHH----HcCCC--cEEEEecCCCCCCCCCCceEEEecc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL----ERGIP--STLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~----erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
.++.+|||||||.|.++.+++++ .++.+.+..+|+.|.+.++ +.|+. +.+...|..+++. +||.|++..
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~ 135 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAER--YGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE 135 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred CCCCEEEEeCCCccHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe
Confidence 34578999999999999999876 1333344455555555554 44653 6788888777663 899999998
Q ss_pred cccccc--cchHHHHHHHHhccCCCeEEEEEc
Q 007165 288 CRIDWL--QRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 288 ~~l~~~--~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.++|+ .+...+++++.++|||||.+++..
T Consensus 136 -~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 136 -MFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp -EGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred -chhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 58887 455789999999999999999865
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4e-11 Score=121.52 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=72.0
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC---C----C----cEEEEecCCCCCCCCCCceEEE
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---I----P----STLGVLGTKRLPYPSRSFELAH 284 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg---~----~----~~~~v~d~~~Lpfpd~sFDlV~ 284 (615)
+++|||+|||+|.++..|+.. |.++++.|++..+++.|++.- + + +.+...+++.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceee
Confidence 367999999999999999863 333444455555666665541 1 1 233444444443 4599999
Q ss_pred ecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|+. +++|+.|+..++..+.++|||||.+++++-+
T Consensus 164 cse-vleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 164 CSE-VLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eHH-HHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 999 7999999999999999999999999998854
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-10 Score=115.65 Aligned_cols=95 Identities=23% Similarity=0.383 Sum_probs=73.5
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCCCCCCCceEEEec
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
++|||||||+|.++..+++. .++++|+ ++.+++.++++ +. .+.+...|....|++ ++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~-----s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTI-----SPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEEC-----CHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehH
Confidence 36999999999999888753 3455554 55555555443 33 467788887666665 589999988
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
. +++|+.+...+++++.++|||||+++++++
T Consensus 75 ~-~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 75 E-VIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred H-HHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 8 588899999999999999999999999875
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-10 Score=110.88 Aligned_cols=97 Identities=24% Similarity=0.348 Sum_probs=78.1
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCC-CC-CCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-RL-PYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~-~L-pfpd~sFDlV~~s~~~l~~~ 293 (615)
+.+|||+|||.|.+..+|.+. -.++..+.+++++.+..+.++|+++ .++|++ .| .|++++||.|+++. +++.+
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~rGv~V--iq~Dld~gL~~f~d~sFD~VIlsq-tLQ~~ 88 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVARGVSV--IQGDLDEGLADFPDQSFDYVILSQ-TLQAV 88 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHcCCCE--EECCHHHhHhhCCCCCccEEehHh-HHHhH
Confidence 478999999999999999864 1334445577788888888999874 455643 34 38999999999999 69999
Q ss_pred cchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.+++.+|.|+.|+ |...+++.||.
T Consensus 89 ~~P~~vL~EmlRV---gr~~IVsFPNF 112 (193)
T PF07021_consen 89 RRPDEVLEEMLRV---GRRAIVSFPNF 112 (193)
T ss_pred hHHHHHHHHHHHh---cCeEEEEecCh
Confidence 9999999999777 66888888886
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-10 Score=112.63 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=73.8
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcC-CCcEEEEecC-CCCC--CCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGT-KRLP--YPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg-~~~~~~v~d~-~~Lp--fpd~sFDlV~~s~ 287 (615)
..+|||+|||+|.++..++.. +++++|+++.++..+..+. ...+ .++.+.++|+ +.++ +++++||+|++.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKI-EEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHH-HHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 468999999999999888753 4666666655554443222 2223 3578888888 7776 7788999999876
Q ss_pred cccccccc--------hHHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 CRIDWLQR--------DGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~~l~~~~d--------~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+ .+|... ...+++++.++|||||.|+++.+.
T Consensus 120 ~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 120 P-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred C-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3 444321 356899999999999999998754
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4e-10 Score=116.71 Aligned_cols=126 Identities=14% Similarity=0.290 Sum_probs=87.7
Q ss_pred ecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHH
Q 007165 180 NFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFA 256 (615)
Q Consensus 180 ~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A 256 (615)
.|+............-.+.+.+.+.+. ++.+|||||||-|.++.++++. +|+|+++|..+...+. +.+
T Consensus 45 yf~~~~~tL~eAQ~~k~~~~~~kl~L~--------~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r~ 115 (283)
T COG2230 45 YFEDPDMTLEEAQRAKLDLILEKLGLK--------PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KRI 115 (283)
T ss_pred EeCCCCCChHHHHHHHHHHHHHhcCCC--------CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HHH
Confidence 444444444444444455555555543 4588999999999999999865 4556655555444333 333
Q ss_pred HHcCCC--cEEEEecCCCCCCCCCCceEEEecccccccccc--hHHHHHHHHhccCCCeEEEEEcC
Q 007165 257 LERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 257 ~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d--~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+++|.+ +++...|...+. +.||-|++.. .++|+.. ...+|..+.++|+|||.+++.+-
T Consensus 116 ~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg-mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 116 AARGLEDNVEVRLQDYRDFE---EPFDRIVSVG-MFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred HHcCCCcccEEEeccccccc---cccceeeehh-hHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 445665 666666665554 5599999988 5898866 67899999999999999998763
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-10 Score=111.85 Aligned_cols=99 Identities=23% Similarity=0.467 Sum_probs=77.3
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
+.++||+|||.|..+.+|+++ .|+++|.++..+... .+.|.+.++++...+.|.....++ +.||+|++.. +++|+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l-~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~-v~~fL 107 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKL-QRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTV-VFMFL 107 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHH-HHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEES-SGGGS
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHH-HHHHhhcCceeEEEEecchhcccc-CCcCEEEEEE-EeccC
Confidence 468999999999999999976 678888887766554 367778899999999998887775 7899999766 57777
Q ss_pred cch--HHHHHHHHhccCCCeEEEEEc
Q 007165 294 QRD--GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 294 ~d~--~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+.. ..++..+...++|||++++.+
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 544 568999999999999998843
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.9e-10 Score=109.80 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=76.1
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc-
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 294 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~- 294 (615)
..+|||||||+|.++..|... ..+.++.+.|+++.+++.|+++...+.+.++|+.. |+++++||+|++.. +++|++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~-~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~-vL~hl~p 120 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRL-LPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKG-VLIHINP 120 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHh-CCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECC-hhhhCCH
Confidence 467999999999999988754 12345666678888888888766667788888777 88899999999888 577764
Q ss_pred -chHHHHHHHHhccCCCeEEEEEc
Q 007165 295 -RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 295 -d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+...+++++.|++ +++++++.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEE
Confidence 2367899999998 56777765
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.2e-10 Score=127.56 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=74.0
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc----CCCcEEEEecCCCCC--CCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLP--YPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~d~~~Lp--fpd~sFDlV~~ 285 (615)
+.+|||||||+|.++..++.. .++|+|+ ++.+++.|+++ +.++.+.++|...+| +++++||+|++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDI-----S~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDI-----SENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEEC-----CHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 468999999999988887643 4555555 44555544432 456677888888887 78899999998
Q ss_pred cccccccc-------------cchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 286 SRCRIDWL-------------QRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 286 s~~~l~~~-------------~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+. ++|+. .+...+|+++.|+|||||.+++.+..
T Consensus 494 n~-vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 494 SS-ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred ch-HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 87 46653 24467999999999999999998753
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-09 Score=107.21 Aligned_cols=104 Identities=20% Similarity=0.276 Sum_probs=80.1
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC---CCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+..+|||+|||+|.++..++........+.+.|+++.+++.++++. .++.+..+|+..+++++++||+|+++. +++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~-~~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAF-GLR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEee-eeC
Confidence 3478999999999999888754211123444455566666665542 357788888888888888999999887 688
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+..++..+++++.++|+|||++++....
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999999999999999999999987643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-09 Score=118.46 Aligned_cols=98 Identities=22% Similarity=0.397 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc--CCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er--g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
++.+|||||||+|.++..+++. .+..+.+.|+++.+++.|+++ +..+.+...|...+ +++||+|++.. .++|
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~--~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~-~~eh 240 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEH--YGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVG-MFEH 240 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeC-chhh
Confidence 3468999999999999988864 133455556667777777665 34566777776555 47899999887 5788
Q ss_pred ccc--hHHHHHHHHhccCCCeEEEEEcC
Q 007165 293 LQR--DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 293 ~~d--~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+.+ ...+++++.++|||||++++.+.
T Consensus 241 vg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 241 VGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 743 46799999999999999999764
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=106.62 Aligned_cols=98 Identities=23% Similarity=0.349 Sum_probs=72.1
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcC---CCcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
...+++||+|||.|.++..|+.+ +++++ |+++..++.|++|- ..+.+.+++.... .|+++||+|+++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~Llav-----Dis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SE- 114 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAV-----DISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSE- 114 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEE-----ES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEE-----eCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEeh-
Confidence 45678999999999999999976 45555 55666677777763 3588888887654 4779999999999
Q ss_pred ccccccc---hHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQR---DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d---~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+++|+.+ ...++..+...|+|||.|++.+.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 6888865 35689999999999999999763
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-10 Score=115.64 Aligned_cols=100 Identities=32% Similarity=0.448 Sum_probs=82.1
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC-CC-CCCCCceEEEecccccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP-YPSRSFELAHCSRCRID 291 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~-Lp-fpd~sFDlV~~s~~~l~ 291 (615)
+.-+++||+|||||.++..|... +-++.+.|+|++|++.|.++|+--.+.++++.. ++ ..+..||+|++.. ++.
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD-Vl~ 199 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD-VLP 199 (287)
T ss_pred CccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh-HHH
Confidence 34689999999999999988764 345556688899999999998765555666442 22 4568899999888 799
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEc
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
|+.+.+.++.-+...|+|||.|.||+
T Consensus 200 YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 200 YLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred hhcchhhHHHHHHHhcCCCceEEEEe
Confidence 99999999999999999999999987
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=108.01 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=68.3
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--------CCCCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--------fpd~sFDl 282 (615)
+.+|||||||+|.++..+++. .|+++|+++. ....++.+.++|+...+ +.+++||+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 468999999999999988753 5777777651 11134778888987753 66789999
Q ss_pred EEecccccccccch-----------HHHHHHHHhccCCCeEEEEEcC
Q 007165 283 AHCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 283 V~~s~~~l~~~~d~-----------~~~L~ei~RvLkPGG~Lvis~P 318 (615)
|+|.. +.++..++ ..+|.++.++|+|||.|++...
T Consensus 121 V~S~~-~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 121 VMSDM-APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred EecCC-CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99865 46554322 3589999999999999999764
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-09 Score=107.54 Aligned_cols=102 Identities=22% Similarity=0.264 Sum_probs=76.4
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc------CCCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er------g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
..+|||+|||+|.++..++........+.+.|+++.+++.++++ ..++.+...|...++++.++||+|+++. +
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~-~ 130 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF-G 130 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec-c
Confidence 46899999999999888865310012333334444555555443 2356788888888888788999999888 5
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+++..++..++.++.++|+|||++++.+.
T Consensus 131 l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 LRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 88999999999999999999999998764
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.5e-09 Score=102.89 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=70.1
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
+.+|||+|||+|.++..++. .+|+++|.++.++..+. +.+++.+. ++.+..+|+..++ .+++||+|++.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--h
Confidence 46899999999998887763 25778877766554333 23334454 4788888988775 357999998643 3
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.+...++..+.++|+|||.+++...
T Consensus 119 ---~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 ---ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3455688899999999999998764
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-09 Score=108.26 Aligned_cols=100 Identities=18% Similarity=0.233 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcC--CCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||+|||+|.++..|+.. .-....+.+.|+++.+++.|+++. .++.+.+.+...+++++++||+|+|+. +
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~-~ 138 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH-F 138 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC-e
Confidence 4468999999999988887631 111234555566777777776652 345666777777777788999999998 6
Q ss_pred cccccch--HHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~--~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+||++++ ..+++++.|+++ |.+++.+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 9999875 469999999998 5555554
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-09 Score=104.53 Aligned_cols=101 Identities=17% Similarity=0.276 Sum_probs=71.4
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC---CCCCCceEEEeccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP---YPSRSFELAHCSRC 288 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp---fpd~sFDlV~~s~~ 288 (615)
.+|||||||+|.++..++.. +++++|++...+..+.. .+.+.++ ++.+..+|+..++ +++++||.|++.+
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~-~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~- 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANN-KANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF- 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH-HHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC-
Confidence 57999999999999988854 56666665554443332 2223333 5788888876553 5667999999766
Q ss_pred ccccccch--------HHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 RIDWLQRD--------GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~~~~d~--------~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
..+|.... ..++.++.++|||||.|++.+..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 35554322 46899999999999999997743
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.6e-09 Score=92.36 Aligned_cols=97 Identities=18% Similarity=0.120 Sum_probs=66.9
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCC-CCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR-LPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~-Lpfpd~sFDlV~~s~~~ 289 (615)
..+|||+|||+|.++..++.. +++++|+++..+..+... +...+. ++.+...|... ++....+||+|++...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~- 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERN-ARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS- 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHH-HHHhCCCceEEEeccccccChhhcCCCCEEEECCc-
Confidence 358999999999999998754 466666655544443322 222233 46676676554 3333468999998663
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.+ ....+++++.++|+|||+|+++.
T Consensus 98 ~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 GG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 32 23579999999999999999864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.3e-09 Score=105.30 Aligned_cols=99 Identities=20% Similarity=0.396 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----CCCcEEEEecCCCCC-CCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLP-YPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~d~~~Lp-fpd~sFDlV~~s~ 287 (615)
+..+|||||||+|.++..+... .++++|+ ++.+++.++++ +..+.+...+....+ ..+++||+|+++.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~-----s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~ 122 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGADVTGIDA-----SEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCME 122 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcC-----CHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhh
Confidence 3467999999999999888764 3455544 44444444432 455667777766554 3457999999988
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+++.+++..++.++.++|+|||.++++.+.
T Consensus 123 -~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 123 -MLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred -HhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 5888999999999999999999999998764
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=106.15 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=75.4
Q ss_pred CCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC
Q 007165 185 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI 261 (615)
Q Consensus 185 g~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~ 261 (615)
+..|..+.........+++.... .+..+|||+|||+|.++..++.. +|+++|+++..+..+.. .+...++
T Consensus 135 g~aFgtG~h~tt~l~l~~l~~~~------~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~-n~~~n~~ 207 (288)
T TIGR00406 135 GLAFGTGTHPTTSLCLEWLEDLD------LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARK-NAELNQV 207 (288)
T ss_pred CCcccCCCCHHHHHHHHHHHhhc------CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHcCC
Confidence 34455554444444444443111 12478999999999988777643 56777776665554442 2223344
Q ss_pred C--cEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 262 P--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 262 ~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
. +.+...+ ..+..+++||+|+++. ..+ ....++.++.++|||||+|+++...
T Consensus 208 ~~~~~~~~~~--~~~~~~~~fDlVvan~-~~~---~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 208 SDRLQVKLIY--LEQPIEGKADVIVANI-LAE---VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred CcceEEEecc--cccccCCCceEEEEec-CHH---HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 3 2333333 2334467999999765 222 3356899999999999999998753
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-08 Score=101.31 Aligned_cols=93 Identities=22% Similarity=0.310 Sum_probs=68.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
+..+|||+|||+|.++..++.. .++|+|+ ++.+++.|+++ +. ++.+.+.|...++ ++||+|++.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~-----s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~ 126 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDI-----SEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCM 126 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEEC-----CHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEh
Confidence 3578999999999999999865 4555555 45555554443 32 5788888887765 789999998
Q ss_pred cccccccc--chHHHHHHHHhccCCCeEEEEE
Q 007165 287 RCRIDWLQ--RDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 287 ~~~l~~~~--d~~~~L~ei~RvLkPGG~Lvis 316 (615)
.. ++|.+ +...++.++.+++++|+++.++
T Consensus 127 ~~-l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 127 DV-LIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hH-HHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 84 55553 3467899999999988777664
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.8e-09 Score=104.21 Aligned_cols=100 Identities=15% Similarity=0.021 Sum_probs=69.6
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHH------------HHcCCCcEEEEecCCCCCCC-CCCc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFA------------LERGIPSTLGVLGTKRLPYP-SRSF 280 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A------------~erg~~~~~~v~d~~~Lpfp-d~sF 280 (615)
..+|||+|||.|..+.+|+++ .|+|+|+++..+..++.+.. ..++..+.+.++|...++.. .++|
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f 114 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV 114 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence 368999999999999999976 66677666554442211100 00234577889998877643 4679
Q ss_pred eEEEecccccccccch--HHHHHHHHhccCCCeEEEEE
Q 007165 281 ELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 281 DlV~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis 316 (615)
|.|+-..+ +++++.. ..++..+.++|||||++++.
T Consensus 115 D~i~D~~~-~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 115 DAVYDRAA-LIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CEEEechh-hccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 99997764 5555433 45899999999999976654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.8e-09 Score=104.62 Aligned_cols=98 Identities=21% Similarity=0.390 Sum_probs=75.0
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHH----cCC-CcEEEEecCCCCCCC-CCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE----RGI-PSTLGVLGTKRLPYP-SRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~e----rg~-~~~~~v~d~~~Lpfp-d~sFDlV~~s~ 287 (615)
..+|||+|||+|.++..++.. .++++|+ ++.+++.+++ .+. ++.+...+...++.. .++||+|++..
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~-----s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDA-----SEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeC-----CHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehh
Confidence 468999999999999888754 3455554 4444444433 244 477777777666644 37899999988
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+++..++..++.++.++|+|||.++++.++
T Consensus 121 -~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 121 -VLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred -HHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 5899999999999999999999999998754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=98.35 Aligned_cols=119 Identities=16% Similarity=0.140 Sum_probs=77.5
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
.+|||+|||+|.++..++.. .|+++|+++..+..+.... ...+..+.+..+|....+ .++||+|+++.. +++.+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p-~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENA-KLNNVGLDVVMTDLFKGV--RGKFDVILFNPP-YLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHH-HHcCCceEEEEccccccc--CCcccEEEECCC-CCCCc
Confidence 57999999999999998865 3566665555444333222 233556777777765543 458999998763 43332
Q ss_pred c---------------------hHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 295 R---------------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 295 d---------------------~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
+ ...++.++.++|+|||.+++..+... . -..+..++++..|....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~------~~~~~~~l~~~gf~~~~ 162 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--G------EPDTFDKLDERGFRYEI 162 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--C------hHHHHHHHHhCCCeEEE
Confidence 1 24579999999999999999875431 1 12344555555665443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.5e-09 Score=101.05 Aligned_cols=96 Identities=22% Similarity=0.292 Sum_probs=71.1
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC-C-CCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-PYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~-L-pfpd~sFDlV~~s~~~l~~~ 293 (615)
..+|||+|||+|.++..+++.. +.++.+.|+++.+++.+++++ +.+.++|+.. + ++++++||+|+|+. ++||+
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~~-~l~~~ 88 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARG--VNVIQGDLDEGLEAFPDKSFDYVILSQ-TLQAT 88 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcC--CeEEEEEhhhcccccCCCCcCEEEEhh-HhHcC
Confidence 3579999999999998887541 223344566677777777665 4566777654 4 47788999999988 69999
Q ss_pred cchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+++..+++++.|+++ .++++.|+
T Consensus 89 ~d~~~~l~e~~r~~~---~~ii~~p~ 111 (194)
T TIGR02081 89 RNPEEILDEMLRVGR---HAIVSFPN 111 (194)
T ss_pred cCHHHHHHHHHHhCC---eEEEEcCC
Confidence 999999999988765 45566554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=7e-09 Score=111.20 Aligned_cols=127 Identities=14% Similarity=0.224 Sum_probs=82.2
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
.+|||+|||+|.++..++.+ .|+++|+++..+..+... +...++...+...|... ..+++||+|+|+. .+|+
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~n-l~~n~l~~~~~~~D~~~--~~~~~fDlIvsNP-PFH~ 273 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRAT-LAANGLEGEVFASNVFS--DIKGRFDMIISNP-PFHD 273 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCEEEEccccc--ccCCCccEEEECC-CccC
Confidence 47999999999999988854 466666666555444422 23345666666666543 2357899999887 4665
Q ss_pred c-----cchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEeeCceEEEe
Q 007165 293 L-----QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWA 356 (615)
Q Consensus 293 ~-----~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~~~~aiwq 356 (615)
. .....++.++.+.|||||.|++........ + ..++.... ..+..++.+...+|+
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y-~------~~l~~~Fg--~~~~la~~~~f~v~~ 333 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPY-P------DLLDETFG--SHEVLAQTGRFKVYR 333 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCCh-H------HHHHHHcC--CeEEEEeCCCEEEEE
Confidence 2 234679999999999999999987543211 1 11222222 235566666666664
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.3e-09 Score=107.45 Aligned_cols=99 Identities=23% Similarity=0.308 Sum_probs=75.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc-CCCcE--EEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPST--LGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er-g~~~~--~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
.+++|||||||.|.++-.++.+ .|+|+|.+.. .-.|-+++++. |.... ..-...+.+|. .++||+|+|..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l--f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG- 190 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL--FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG- 190 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH--HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee-
Confidence 4589999999999999888865 5777776554 33343444433 23322 22246788887 78999999998
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++.|..+|-..|.++...|+|||.+++.+
T Consensus 191 VLYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 191 VLYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred ehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 79999999999999999999999999865
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=100.20 Aligned_cols=94 Identities=17% Similarity=0.097 Sum_probs=66.0
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
..+|||||||+|..+..++. ..|+++|+++.....+. +...+.+. .+.+..+|........++||+|++..
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~-~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~- 150 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAA-QNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA- 150 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc-
Confidence 46899999999999887764 25677766655544333 22223344 36788888766544567999999887
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++++++ .++.++|+|||+|++..
T Consensus 151 ~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 151 AASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred Ccchhh------HHHHHhcCcCcEEEEEE
Confidence 455443 57889999999999865
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.1e-08 Score=94.71 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=75.0
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
..+|||+|||+|.++..++.+ +|+++|+++..+..+... +...+. ++.+..+|.. .+++ ++||+|++... .
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n-~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~-~ 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKEN-RQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGS-G 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCeEEEecCch-hhcC-cCCCEEEECCC-c
Confidence 468999999999999888753 566776666554443322 222233 4666666653 2333 68999998763 3
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEE
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l 345 (615)
+ ....++.++.++|+|||++++..... .....+..++++.+++.
T Consensus 108 ~---~~~~~l~~~~~~Lk~gG~lv~~~~~~--------~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 G---NLTAIIDWSLAHLHPGGRLVLTFILL--------ENLHSALAHLEKCGVSE 151 (187)
T ss_pred c---CHHHHHHHHHHhcCCCeEEEEEEecH--------hhHHHHHHHHHHCCCCc
Confidence 3 34568899999999999999865322 12344555666666643
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-09 Score=106.61 Aligned_cols=115 Identities=18% Similarity=0.255 Sum_probs=75.5
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEE----EEecCCCCCC--CCCCceEEEeccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTL----GVLGTKRLPY--PSRSFELAHCSRC 288 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~----~v~d~~~Lpf--pd~sFDlV~~s~~ 288 (615)
+.++|+|||+|..+..+++. +|+++ |++++|+++|.+....... ...+.+..++ .+++.|+|+|..|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIat-----D~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIAT-----DVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheee-----cCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 57999999999766666665 67776 5667788888765322111 1122222333 4899999999995
Q ss_pred ccccccchHHHHHHHHhccCCCe-EEEEEcCCCCCCChhHHHHHHHHHHHHhhcceE
Q 007165 289 RIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG-~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~ 344 (615)
+||+ |.+++++++.|+||+.| .+++=. ... +.-.|.+...+..+.+|.
T Consensus 110 -~HWF-dle~fy~~~~rvLRk~Gg~iavW~-----Y~d-d~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 110 -VHWF-DLERFYKEAYRVLRKDGGLIAVWN-----YND-DFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred -HHhh-chHHHHHHHHHHcCCCCCEEEEEE-----ccC-CCcCCHHHHHHHHHHhhc
Confidence 9998 56679999999999877 555422 111 223355556666666653
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.5e-08 Score=102.65 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=61.6
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc------CCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er------g~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
+.+|||||||+|.++..|++. .|+++|+++.++..+..+ +.+. +..+.+.+.|...+ +++||+|+|..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~-~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~ 220 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERR-AKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLD 220 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHhcccccccccceEEEEcchhhc---CCCcCEEEEcC
Confidence 468999999999999999865 455665555544433321 1221 12456777776544 47899999998
Q ss_pred cccccccch--HHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 CRIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+ ++|.++. ..++..+.+ +.+||.++...|.
T Consensus 221 v-L~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~ 252 (315)
T PLN02585 221 V-LIHYPQDKADGMIAHLAS-LAEKRLIISFAPK 252 (315)
T ss_pred E-EEecCHHHHHHHHHHHHh-hcCCEEEEEeCCc
Confidence 4 5555543 345666665 4566665544443
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.5e-08 Score=97.96 Aligned_cols=114 Identities=20% Similarity=0.261 Sum_probs=69.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+..+|||+|||+|.++..++.. .|+++|+++..+..+.. .+...++...+. ++..+.+||+|+++.. .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~-n~~~~~~~~~~~------~~~~~~~fD~Vvani~-~- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARE-NAELNGVELNVY------LPQGDLKADVIVANIL-A- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHcCCCceEE------EccCCCCcCEEEEcCc-H-
Confidence 3478999999999888877643 36666665554443332 222233321111 1222237999997642 2
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
.....++.++.++|||||+++++..... ....+...+++.+|.+..
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~~--------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILEE--------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcHh--------hHHHHHHHHHHCCCEEEE
Confidence 2235688999999999999999864321 123445556666676553
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.7e-08 Score=96.41 Aligned_cols=102 Identities=20% Similarity=0.191 Sum_probs=67.5
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
..+|||+|||+|.++..++.. +++++|+++..+..+. +.+...+.++.+...|... .+++++||+|+++--....
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~-~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSAR-LNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 368999999999999888753 4566666554443333 2223335567777777654 2456799999986311111
Q ss_pred cc--------------------chHHHHHHHHhccCCCeEEEEEcCC
Q 007165 293 LQ--------------------RDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 293 ~~--------------------d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.. ....++.++.++|||||.+++..+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 00 1345788999999999999986644
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-08 Score=109.23 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=76.2
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCC--CCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL--PYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~L--pfpd~sFDlV~~s~~ 288 (615)
...+||||||+|.++..++.. .++|+|+....+..+.. .+.+.++ ++.+..+|+..+ .+++++||.|++.+
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~-ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF- 200 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLK-QIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF- 200 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-
Confidence 357999999999999999854 67788877766655553 3344454 577888887654 47889999999766
Q ss_pred ccccccch------HHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRD------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
..+|.... ..++.++.|+|+|||.+.+.+
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 36664333 468999999999999999976
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=8e-08 Score=97.40 Aligned_cols=125 Identities=16% Similarity=0.204 Sum_probs=77.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC----CCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~----Lpfpd~sFDlV~~s 286 (615)
++.+|||+|||+|.++..+++. .|+++|+++.++.... +.|+++ .++.+..+|... .+++ .+||+|++.
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d 148 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQD 148 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEEC
Confidence 3468999999999999999864 4677776665554332 344443 456777777653 1223 569999854
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcCC---CCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE---AYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~---~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
.. . ......++.++.|+|||||+|+++.+. .+...+ ....+.....++..+++.+.
T Consensus 149 ~~-~--p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~--~~~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 149 VA-Q--PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP--KEIFKEEIRKLEEGGFEILE 207 (226)
T ss_pred CC-C--hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH--HHHHHHHHHHHHHcCCeEEE
Confidence 31 1 111234689999999999999996442 111111 12233444556666666553
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-08 Score=98.47 Aligned_cols=97 Identities=22% Similarity=0.348 Sum_probs=73.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEec-CCCCCCCCCCceEEEecccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d-~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
...-|||||||+|..+..|.+. ..+|+|++ +.|++.|.++-+...+..+| -+.+||..++||.|++.. +++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiS-----psML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDIS-----PSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISIS-AVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCC-----HHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEee-eee
Confidence 5688999999999999988765 44566555 55555555555555566666 478999999999999776 688
Q ss_pred cccc-------h----HHHHHHHHhccCCCeEEEEEc
Q 007165 292 WLQR-------D----GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 292 ~~~d-------~----~~~L~ei~RvLkPGG~Lvis~ 317 (615)
|+-+ + ..++..++.+|++|+..++..
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 8632 2 237888999999999999976
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.8e-08 Score=98.57 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=66.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||||||+|.++..++.. .|+++|+++.....+.. ..++.+. ++.+..+|......+.+.||+|++..
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~-~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~- 153 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKK-TLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA- 153 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC-
Confidence 3478999999999999877642 56777666554443332 2222344 57888888776655678999999876
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+.+.. ...+.+.|||||.|++..
T Consensus 154 ~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 154 AGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred Ccccc------hHHHHHhhCCCcEEEEEE
Confidence 34332 346677899999999854
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-08 Score=98.45 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=67.3
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
..+|||+|||+|.++..++.. .|+++|+++..+..+. +.+...+.. +.+...|.... .++++||+|+|+- -+
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~-~n~~~n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NP-P~ 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK-RNAERNGLENVEVVQSDLFEA-LPDGKFDLIVSNP-PF 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH-HHHHHTTCTTEEEEESSTTTT-CCTTCEEEEEE----S
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHhcCcccccccccccccc-ccccceeEEEEcc-ch
Confidence 467999999999999998864 3666666555443333 222334555 77777775432 3468999999875 34
Q ss_pred ccccc-----hHHHHHHHHhccCCCeEEEEEcC
Q 007165 291 DWLQR-----DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 291 ~~~~d-----~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+.-.+ ...++.+..+.|+|||.|++...
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 43333 35689999999999999987654
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.6e-08 Score=99.35 Aligned_cols=95 Identities=17% Similarity=0.076 Sum_probs=67.7
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcC----------------CCcEEEEecCCCCCCC-
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG----------------IPSTLGVLGTKRLPYP- 276 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg----------------~~~~~~v~d~~~Lpfp- 276 (615)
..+|||+|||.|..+.+|+++ .|+|+|+++..+..+ +++++ ..+.+.++|...++..
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~----~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQF----FAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHH----HHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 358999999999999999976 566666655444322 22333 3467788888777533
Q ss_pred CCCceEEEecccccccccch--HHHHHHHHhccCCCeEEEE
Q 007165 277 SRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 277 d~sFDlV~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvi 315 (615)
...||+|+-..+ +++++.. ..++..+.++|+|||.+++
T Consensus 114 ~~~fd~v~D~~~-~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 114 LADVDAVYDRAA-LIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCCeeEEEehHh-HhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 258999997764 5666433 4699999999999996444
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.8e-08 Score=102.95 Aligned_cols=119 Identities=21% Similarity=0.225 Sum_probs=81.4
Q ss_pred CCCeEEEECCCCchHHHHHh--cCCCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCCCCCCCceEEEeccc---
Q 007165 215 NIRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRC--- 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~--~~~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lpfpd~sFDlV~~s~~--- 288 (615)
++.+|||+|||+|.++..++ ...++|+|+++.++..+..+ ++..+.. +.+..+|+.++|+++++||+|++.--
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~n-l~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARIN-LEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHH-HHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 34689999999998876654 34677777776666554433 2333443 57888999999988899999998421
Q ss_pred --ccc--cccc-hHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 289 --RID--WLQR-DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 289 --~l~--~~~d-~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
... ...+ ...++.++.++|+|||++++..|... .+..+++...| +.
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----------~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----------DLESLAEDAFR-VV 311 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----------CHHHHHhhcCc-ch
Confidence 011 1112 36799999999999999999887541 23355666666 44
|
This family is found exclusively in the Archaea. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.1e-08 Score=96.03 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=59.3
Q ss_pred chhHHHHHHHHHc--------CCCcEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 247 DVHENQIQFALER--------GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 247 Dls~a~i~~A~er--------g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
|+|+.|++.|+++ ..++.+.++|++++|+++++||+|++++ ++++++++..+++|++|+|||||.|++.+.
T Consensus 4 D~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~-~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 4 DFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY-GLRNVVDRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred cCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc-hhhcCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 4455555555432 1257899999999999999999999988 699999999999999999999999998875
Q ss_pred C
Q 007165 319 E 319 (615)
Q Consensus 319 ~ 319 (615)
.
T Consensus 83 ~ 83 (160)
T PLN02232 83 N 83 (160)
T ss_pred C
Confidence 4
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.2e-08 Score=82.63 Aligned_cols=93 Identities=24% Similarity=0.385 Sum_probs=67.8
Q ss_pred eEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHH---H--cCCCcEEEEecCCCCCC-CCCCceEEEeccc
Q 007165 218 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFAL---E--RGIPSTLGVLGTKRLPY-PSRSFELAHCSRC 288 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~---e--rg~~~~~~v~d~~~Lpf-pd~sFDlV~~s~~ 288 (615)
++||+|||+|.++..++.. .+.++| .++.+.+.++ + ......+...|...... ..++||+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~- 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVD-----ISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDP- 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEe-----CCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcc-
Confidence 4899999999999888862 444554 4444444443 1 12346677777665543 557899999988
Q ss_pred cccc-ccchHHHHHHHHhccCCCeEEEEE
Q 007165 289 RIDW-LQRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 289 ~l~~-~~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
.+++ ......++..+.+.|+|||.++++
T Consensus 75 ~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4776 667788999999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-07 Score=94.64 Aligned_cols=100 Identities=23% Similarity=0.357 Sum_probs=66.8
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCCCCCCCceEEEecccc--
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCR-- 289 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lpfpd~sFDlV~~s~~~-- 289 (615)
.+|||+|||+|.++..++.. .++++|+++..+..+. +.+...+.. +.+..+|... ++++++||+|+|+.-.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVAR-KNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 57999999999999998854 4566666555444333 222333443 7788888655 4567899999984310
Q ss_pred ---cccc--------------------cchHHHHHHHHhccCCCeEEEEEcC
Q 007165 290 ---IDWL--------------------QRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 ---l~~~--------------------~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.+.. .....++.++.++|+|||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 0100 0113578899999999999999753
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.7e-08 Score=101.76 Aligned_cols=102 Identities=11% Similarity=0.185 Sum_probs=69.5
Q ss_pred CCCeEEEECCCCchHHHHHh-cC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLL-SH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~-~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
.+++|+|||||.|.++..++ .+ .++++|+++..+..+...+....++ .+.|..+|+...+-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 45889999999885544433 22 3556655554444333222121233 4889999987764335789999988
Q ss_pred ccccccc-cchHHHHHHHHhccCCCeEEEEEc
Q 007165 287 RCRIDWL-QRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~-~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+.++|. +++.+++.++.+.|+|||+|++-.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 434442 678899999999999999999976
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=9e-08 Score=95.78 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=66.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||||||+|.++..|+.. .|+++|+++..+..+. +.+.+.+. ++.+..+|.........+||+|++...
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~-~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE-RRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC
Confidence 3468999999999999988754 2677776665554433 22333344 577888887655444578999997763
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
... +...+.+.|+|||+|++..
T Consensus 156 -~~~------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 156 -GPK------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred -ccc------ccHHHHHhcCcCcEEEEEE
Confidence 333 3456788999999999864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.5e-08 Score=101.14 Aligned_cols=144 Identities=21% Similarity=0.297 Sum_probs=91.0
Q ss_pred CCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHh--cC-CCccccCChhchhHHHHHHHHHcC
Q 007165 184 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL--SH-DIIAMSLAPNDVHENQIQFALERG 260 (615)
Q Consensus 184 gg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~--~~-~V~gvdis~~Dls~a~i~~A~erg 260 (615)
-|..|..|.+.-.+...+++.... .++++|||+|||+|.++...+ ++ .|.++|+.+.-+..+. +.+..++
T Consensus 136 Pg~AFGTG~H~TT~lcl~~l~~~~------~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~ 208 (295)
T PF06325_consen 136 PGMAFGTGHHPTTRLCLELLEKYV------KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNG 208 (295)
T ss_dssp TTSSS-SSHCHHHHHHHHHHHHHS------STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT
T ss_pred CCCcccCCCCHHHHHHHHHHHHhc------cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcC
Confidence 456788888777777666665221 234689999999997665544 33 6889999887665555 4555667
Q ss_pred CCcEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhh
Q 007165 261 IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS 340 (615)
Q Consensus 261 ~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~ 340 (615)
+...+.+.... ....+.||+|+++-. . .-...++..+.++|+|||+|++|.--. + ..+.+...+++
T Consensus 209 ~~~~~~v~~~~--~~~~~~~dlvvANI~-~---~vL~~l~~~~~~~l~~~G~lIlSGIl~-----~---~~~~v~~a~~~ 274 (295)
T PF06325_consen 209 VEDRIEVSLSE--DLVEGKFDLVVANIL-A---DVLLELAPDIASLLKPGGYLILSGILE-----E---QEDEVIEAYKQ 274 (295)
T ss_dssp -TTCEEESCTS--CTCCS-EEEEEEES--H---HHHHHHHHHCHHHEEEEEEEEEEEEEG-----G---GHHHHHHHHHT
T ss_pred CCeeEEEEEec--ccccccCCEEEECCC-H---HHHHHHHHHHHHhhCCCCEEEEccccH-----H---HHHHHHHHHHC
Confidence 76666543222 233589999997641 1 223557888999999999999987432 1 12344444555
Q ss_pred cceEEEEee
Q 007165 341 MCWKIVSKK 349 (615)
Q Consensus 341 l~W~l~~~~ 349 (615)
.|.+....
T Consensus 275 -g~~~~~~~ 282 (295)
T PF06325_consen 275 -GFELVEER 282 (295)
T ss_dssp -TEEEEEEE
T ss_pred -CCEEEEEE
Confidence 77765443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=91.10 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=76.1
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCC---cEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~---~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
..+|||+|||+|.++..++.. +++++|+++..+..+. +.+...+.. +.+...|... ++.+++||+|+++...+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~-~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAK-CNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL 101 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHH-HHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence 467999999999999988754 5666665554443332 222222333 6677777544 34556899999764211
Q ss_pred cc--------------------ccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 291 DW--------------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 291 ~~--------------------~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
+. ......+++++.++|||||.+++..+.... -..+..+++...|+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~--------~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG--------EDEVLEYLEKLGFEAE 169 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC--------HHHHHHHHHHCCCeee
Confidence 10 111345899999999999999988765421 1234556666666544
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.1e-08 Score=101.67 Aligned_cols=103 Identities=16% Similarity=0.238 Sum_probs=64.8
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHc-CCCcEEEEecCCC-CCCCCCC---ceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKR-LPYPSRS---FELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~er-g~~~~~~v~d~~~-Lpfpd~s---FDlV~~ 285 (615)
..+|||+|||+|..+..|+++ .++++|+++.++..++.+..... ++++...++|..+ ++++... .++++.
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 367999999999999888754 35555555444443332222211 3456667888765 4444332 233333
Q ss_pred cccccccccc--hHHHHHHHHhccCCCeEEEEEcC
Q 007165 286 SRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 286 s~~~l~~~~d--~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
....+++++. ...+|+++.++|+|||.|++...
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 3334666553 34699999999999999998663
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-07 Score=98.36 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=76.8
Q ss_pred CccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhc--C-CCccccCChhchhHHHHHHHHHcCCC
Q 007165 186 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHENQIQFALERGIP 262 (615)
Q Consensus 186 ~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~--~-~V~gvdis~~Dls~a~i~~A~erg~~ 262 (615)
-.|..|-+.-.....+.++-.. .++++|||+|||+|.++...+. + .+.|+|+.+.-+..++ +.++.++++
T Consensus 139 lAFGTG~HpTT~lcL~~Le~~~------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~ 211 (300)
T COG2264 139 LAFGTGTHPTTSLCLEALEKLL------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVE 211 (300)
T ss_pred cccCCCCChhHHHHHHHHHHhh------cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCc
Confidence 3455554444444444443211 2568899999999987776653 3 6889988887776555 455555655
Q ss_pred c--EEEEecCCCCCCCC-CCceEEEecccccccccch-HHHHHHHHhccCCCeEEEEEcC
Q 007165 263 S--TLGVLGTKRLPYPS-RSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 263 ~--~~~v~d~~~Lpfpd-~sFDlV~~s~~~l~~~~d~-~~~L~ei~RvLkPGG~Lvis~P 318 (615)
. .....+ .+..+. +.||+|+|+-. .++ ..+..++.+.|||||++++|.-
T Consensus 212 ~~~~~~~~~--~~~~~~~~~~DvIVANIL-----A~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 212 LLVQAKGFL--LLEVPENGPFDVIVANIL-----AEVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred hhhhccccc--chhhcccCcccEEEehhh-----HHHHHHHHHHHHHHcCCCceEEEEee
Confidence 2 222222 222333 59999997652 233 4688999999999999999983
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=93.18 Aligned_cols=116 Identities=14% Similarity=0.116 Sum_probs=76.0
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcC--CCcEEEEecCCCC-CCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-PYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v~d~~~L-pfpd~sFDlV~~s 286 (615)
+..+|||+|||+|.++..++. .+|+++|+++..+..+. +.++..+ .++.+..+|.... +..++.||+|++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~-~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR-RNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 346899999999999887653 25777777665554433 2333334 2467777776543 3334689999974
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcce
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 343 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W 343 (615)
. ...+...++.++.++|+|||++++..... +....+...++..++
T Consensus 119 ~----~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--------~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 119 G----GSEKLKEIISASWEIIKKGGRIVIDAILL--------ETVNNALSALENIGF 163 (198)
T ss_pred C----CcccHHHHHHHHHHHcCCCcEEEEEeecH--------HHHHHHHHHHHHcCC
Confidence 3 23456789999999999999999855422 123444455555555
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.9e-08 Score=102.15 Aligned_cols=99 Identities=20% Similarity=0.325 Sum_probs=69.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||||||+|.++..++++ +++++|+ +..+..+. +.+.+.+. ++.+..+|....++++ +|+|++++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~- 223 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCR- 223 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCCC--CCEEEeEh-
Confidence 3478999999999999988865 3555554 22222211 23333444 4678888877666653 69999888
Q ss_pred ccccccch--HHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P 318 (615)
++|...+. ..+|+++.++|+|||++++.+.
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 46655443 4699999999999999999874
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=94.92 Aligned_cols=91 Identities=25% Similarity=0.349 Sum_probs=61.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
+..+|||||||+|.++..|++. .|+++|+ ++.+++.|+++ +. .+.+..+| ++..+++||+|++.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~-----s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~ 134 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDI-----SPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCL 134 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEEC-----CHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEc
Confidence 3468999999999999999865 4555555 44444444433 33 46677766 44456889999998
Q ss_pred ccccccccch--HHHHHHHHhccCCCeEEE
Q 007165 287 RCRIDWLQRD--GILLLELDRLLRPGGYFV 314 (615)
Q Consensus 287 ~~~l~~~~d~--~~~L~ei~RvLkPGG~Lv 314 (615)
. +++|.++. ..++.++.+++++|+.+.
T Consensus 135 ~-~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 135 D-VLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred c-hhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 8 56555433 568888888876554433
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-08 Score=90.26 Aligned_cols=100 Identities=27% Similarity=0.391 Sum_probs=68.3
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----C--CCcEEEEecCCCCC--CCCCCceEEEeccc
Q 007165 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLP--YPSRSFELAHCSRC 288 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g--~~~~~~v~d~~~Lp--fpd~sFDlV~~s~~ 288 (615)
.+|||+|||+|.++..++... ...+.+.|+++..++.++.+ + .++.+.++|..... +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 479999999999998887542 23444445555555555443 2 25788999976665 77899999998652
Q ss_pred cccccc-------chHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQ-------RDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~-------d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
...... ....+++++.++|||||.+++..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 221111 124689999999999999999775
|
... |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=96.89 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=74.4
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
....++||||+|.|..+..|+.. .|.+. +.|..|...-+++|..+ .+..++.-.+.+||+|.|.+ ++.
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~f~~v~aT-----E~S~~Mr~rL~~kg~~v----l~~~~w~~~~~~fDvIscLN-vLD 162 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPLFKEVYAT-----EASPPMRWRLSKKGFTV----LDIDDWQQTDFKFDVISCLN-VLD 162 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhhcceEEee-----cCCHHHHHHHHhCCCeE----EehhhhhccCCceEEEeehh-hhh
Confidence 35678999999999999999864 45555 55666767777788643 33333443456899999999 799
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEc
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-..+|..+|+++++.|+|+|.++++.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999999999999999999999875
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.4e-08 Score=104.96 Aligned_cols=98 Identities=14% Similarity=0.221 Sum_probs=66.0
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC----CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~----~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
.+|||+|||+|.++..++.+ .|+++|+++..+..+...... .+. .+.+...|.... ++..+||+|+|+-
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~-n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNP- 306 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNALSG-VEPFRFNAVLCNP- 306 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCcccCceEEEEEcccccc-CCCCCEEEEEECc-
Confidence 57999999999999988754 566666655544444322221 222 356666664322 3446899999875
Q ss_pred cccccc-----chHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQ-----RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~-----d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-+|... ...+++.++.++|+|||.|++..
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 344321 12568999999999999999986
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.7e-07 Score=95.45 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=69.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC---CCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---LPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~---Lpfpd~sFDlV~~s 286 (615)
+..+|||+|||+|.++.++++. .|+++|+++.+. ..+++.+.++ .++.+.+.|+.. +..+..+||+|++.
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 4468999999999999999864 478888775433 2455666554 456777778643 22234589999977
Q ss_pred ccccccccch-HHHHHHHHhccCCCeEEEEEc
Q 007165 287 RCRIDWLQRD-GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~-~~~L~ei~RvLkPGG~Lvis~ 317 (615)
. + .++. ..++.++.++|||||+|++..
T Consensus 210 v-a---~pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 210 V-A---QPDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred C-C---CcchHHHHHHHHHHhccCCCEEEEEE
Confidence 5 2 2333 456779999999999999964
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=90.68 Aligned_cols=103 Identities=23% Similarity=0.294 Sum_probs=70.8
Q ss_pred CeEEEECCCCchHHHHHhcCC----CccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEeccc--
Q 007165 217 RNVLDVGCGVASFGAYLLSHD----IIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRC-- 288 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~~----V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~-- 288 (615)
.+|||+|||.|.+...|++.. .+|+|+++..+.-|+ .+|..++.+ +.|.+.|+..-.+.++.||+|+--..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 389999999999999998652 445544443332222 334445655 89999998776777888999875321
Q ss_pred ccccccc-----hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 289 RIDWLQR-----DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 289 ~l~~~~d-----~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++...++ +..++..+.++|+|||.|+|+.=+.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 1222222 2347899999999999999987543
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=4e-07 Score=90.69 Aligned_cols=96 Identities=15% Similarity=0.079 Sum_probs=63.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+..+|||+|||+|.++..|+.. .++++|+++..+..+...+ ...+. ++.+..+|......+.++||+|++.. .++
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~-~~~ 155 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRL-KQLGLHNVSVRHGDGWKGWPAYAPFDRILVTA-AAP 155 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHH-HHCCCCceEEEECCcccCCCcCCCcCEEEEcc-Cch
Confidence 3478999999999988877653 5666666544443333222 22243 46777777544322347899999876 344
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
++ ..++.+.|+|||.+++...
T Consensus 156 ~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 156 EI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred hh------hHHHHHhcCCCcEEEEEEc
Confidence 33 4567899999999998764
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.6e-07 Score=88.12 Aligned_cols=102 Identities=23% Similarity=0.415 Sum_probs=67.2
Q ss_pred eEEEECCCCchHHHHHhcCCCccccCChhchhHHHH----HHHHHcCCC-c-EEEEecCCCC--CC------CCCCceEE
Q 007165 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQI----QFALERGIP-S-TLGVLGTKRL--PY------PSRSFELA 283 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i----~~A~erg~~-~-~~~v~d~~~L--pf------pd~sFDlV 283 (615)
+|||||||||..+.+++.+ ...+..-+.|...... +.+.+.+.+ + .-...|+..- +. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999999999875 2233444444444332 122233321 1 0122333322 22 35689999
Q ss_pred Eecccccccccch--HHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 284 HCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 284 ~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
+|.+ .+|..+.. +.+|..+.++|+|||.|++..|..+
T Consensus 107 ~~~N-~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~ 145 (204)
T PF06080_consen 107 FCIN-MLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR 145 (204)
T ss_pred eehh-HHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence 9999 58887655 5699999999999999999998753
|
The function of this family is unknown. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.5e-07 Score=88.68 Aligned_cols=99 Identities=14% Similarity=0.068 Sum_probs=65.8
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCC-CCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR-LPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~-Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||+|||+|.++..++. ..|+++|+++..+..++. .+.+.+. ++.+..+|+.. ++.....+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~-n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~- 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRR-NCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG- 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence 346899999999999888763 357777776665544442 2223343 46777777643 222223467765322
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
..+...++.++.++|+|||+|++..+.
T Consensus 118 ----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 ----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred ----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 234577999999999999999998754
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.4e-07 Score=88.78 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=63.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--------CCCCCce
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--------fpd~sFD 281 (615)
++.+|||+|||+|.++..++.. .|+++|+++.. ....+.+..+|..+.+ +++++||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 3468999999999988877643 47777776532 1134566777765532 4567899
Q ss_pred EEEecccccc----ccc-------chHHHHHHHHhccCCCeEEEEEc
Q 007165 282 LAHCSRCRID----WLQ-------RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 282 lV~~s~~~l~----~~~-------d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+|++..+ .+ |.. +...++.++.++|+|||++++..
T Consensus 101 ~V~~~~~-~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 101 VVMSDAA-PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEEcCCC-CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9997542 11 111 23578999999999999999965
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.4e-07 Score=92.90 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=67.6
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccc-
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC- 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~- 288 (615)
..+|||+|||+|.++..++.. +|+++|+++..+..+. +.++..++ ++.+..+|... ++++++||+|+++--
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~-~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAE-INIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 367999999999999998853 5666766655554443 22333454 46788888643 234568999998510
Q ss_pred ----c-------ccccc------------chHHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 ----R-------IDWLQ------------RDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ----~-------l~~~~------------d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
. +++-+ ....++.++.++|+|||++++....
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 0 11111 1245789999999999999997753
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.2e-07 Score=92.54 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=69.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc----------CCCcEEEEecCCCC-CCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----------GIPSTLGVLGTKRL-PYPSRS 279 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er----------g~~~~~~v~d~~~L-pfpd~s 279 (615)
.+++||+||||.|..+..+++. +|+++ |+++.+++.|++. ..++.+...|+... ...+++
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~V-----Eid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~ 150 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLV-----EIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENS 150 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEE-----eCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCc
Confidence 4578999999999999998764 34445 4455555555542 23567788886442 334678
Q ss_pred ceEEEecccccccccc----hHHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 280 FELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 280 FDlV~~s~~~l~~~~d----~~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
||+|++-. .-++.+. ...+++.+.+.|+|||.+++.....+
T Consensus 151 yDvIi~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~ 195 (283)
T PRK00811 151 FDVIIVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPF 195 (283)
T ss_pred ccEEEECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcc
Confidence 99999753 2333222 15688999999999999998765443
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-06 Score=94.83 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=75.8
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCC-CCCceEEEecccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRID 291 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfp-d~sFDlV~~s~~~l~ 291 (615)
.+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..+.++.+..+|.....++ .++||+|+|+--.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Ar-eNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETAR-KNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 47999999999999887642 5667776666554444 23333466788888886543332 468999998531110
Q ss_pred ------------cc--------cc----hHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEE
Q 007165 292 ------------WL--------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (615)
Q Consensus 292 ------------~~--------~d----~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l 345 (615)
+- .+ ...++.++.+.|+|||++++..... .-+.+..++++.+|..
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~---------Q~e~V~~ll~~~Gf~~ 400 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD---------QGAAVRGVLAENGFSG 400 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc---------HHHHHHHHHHHCCCcE
Confidence 00 01 1356777889999999999866432 1234556666666644
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.8e-07 Score=89.85 Aligned_cols=112 Identities=18% Similarity=0.277 Sum_probs=70.5
Q ss_pred CCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
...|-|+|||.+.++..+.+. .|...|+.... -.+..+|+..+|++++++|+|+++.+ |. -.
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n---------------~~Vtacdia~vPL~~~svDv~VfcLS-LM-GT 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPN---------------PRVTACDIANVPLEDESVDVAVFCLS-LM-GT 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SS---------------TTEEES-TTS-S--TT-EEEEEEES-----SS
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCC---------------CCEEEecCccCcCCCCceeEEEEEhh-hh-CC
Confidence 467999999999999877643 45556554321 23667899999999999999998764 43 35
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEeeC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~~ 350 (615)
+...++.|+.|+|||||.|.|+....... .-+.+.+..+++++++..+..
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf~------~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRFE------NVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-S-------HHHHHHHHHCTTEEEEEEE-
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccCc------CHHHHHHHHHHCCCeEEeccc
Confidence 67789999999999999999987432111 124556678899999887654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.7e-07 Score=98.28 Aligned_cols=105 Identities=23% Similarity=0.352 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--CCCCCceEEEe---
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHC--- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--fpd~sFDlV~~--- 285 (615)
++.+|||+|||+|..+..++.. .|+++|+++..+...+ +.+...|..+.+..+|+..++ ++.++||.|++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 3468999999999999888753 4666666655554433 333444666778888887654 34578999994
Q ss_pred -cccc-c------ccccc----------hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 -SRCR-I------DWLQR----------DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 -s~~~-l------~~~~d----------~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+... + .|... ...+|.++.++|||||++++++-..
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3211 1 12111 2358999999999999999988543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-06 Score=90.95 Aligned_cols=101 Identities=14% Similarity=0.244 Sum_probs=67.2
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEecc---
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSR--- 287 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~--- 287 (615)
.+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..+.. +.+..+|... ++++++||+|+++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~-~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAE-ENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 57999999999999888753 5666666554443333 222233443 7788888644 34445899999851
Q ss_pred ---------ccccccc------------chHHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 ---------CRIDWLQ------------RDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ---------~~l~~~~------------d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+..|-+ ....++.++.++|+|||++++....
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 0122222 2356889999999999999997754
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-06 Score=93.21 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=67.0
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccc-
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR- 289 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~- 289 (615)
.+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..++ ++.+..+|... ++++++||+|+++--.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~-~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAE-INIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 57999999999999988753 5667766665554444 22333344 47788888643 2345689999985200
Q ss_pred -----------ccccc------------chHHHHHHHHhccCCCeEEEEEcC
Q 007165 290 -----------IDWLQ------------RDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 -----------l~~~~------------d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+++-+ ....++.++.++|+|||++++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11111 124678999999999999999764
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.2e-07 Score=93.07 Aligned_cols=105 Identities=19% Similarity=0.360 Sum_probs=73.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHH--c----CCCcEEEEecC------CCCCCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE--R----GIPSTLGVLGT------KRLPYPSRS 279 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~e--r----g~~~~~~v~d~------~~Lpfpd~s 279 (615)
++..+||+|||-|.-+.....+ .++++||+.+.+..++.+.-.- + ..++.|..+|. ..+++++.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 4567999999999765555443 5677877766555444322111 1 23577888884 345666667
Q ss_pred ceEEEeccccccccc----chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 280 FELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 280 FDlV~~s~~~l~~~~----d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
||+|-|-+| +||.- ..+.+|.++.+.|||||+|+-+.|+.
T Consensus 197 fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 197 FDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred cceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 999999984 88853 23458999999999999999999876
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-07 Score=94.95 Aligned_cols=98 Identities=19% Similarity=0.292 Sum_probs=80.0
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
..++|||||.|.....|....|. .+.-.|.|..|++.++.. ++.....+.|.+.|+|.+++||+|+++. .+||+
T Consensus 74 p~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-slHW~ 150 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SLHWT 150 (325)
T ss_pred cceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhh-hhhhh
Confidence 46999999999999999876432 223335566666666543 4567788899999999999999999888 69999
Q ss_pred cchHHHHHHHHhccCCCeEEEEEc
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.+....+.++...|||.|.|+-+.
T Consensus 151 NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 151 NDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred ccCchHHHHHHHhcCCCccchhHH
Confidence 999999999999999999999754
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.1e-07 Score=92.37 Aligned_cols=97 Identities=20% Similarity=0.323 Sum_probs=62.6
Q ss_pred eEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCc-EEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPS-TLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~-~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+|||+|||.|.++..|++. .++-+|++..-+..++...+ ..+++. .+...| ...+..+ +||+|+|+- -+|-
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~-~N~~~~~~v~~s~-~~~~v~~-kfd~IisNP-Pfh~ 236 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA-ANGVENTEVWASN-LYEPVEG-KFDLIISNP-PFHA 236 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH-HcCCCccEEEEec-ccccccc-cccEEEeCC-CccC
Confidence 7999999999999999865 34444444433333332222 224444 344433 3334444 999999876 3553
Q ss_pred ccch-----HHHHHHHHhccCCCeEEEEEcC
Q 007165 293 LQRD-----GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 293 ~~d~-----~~~L~ei~RvLkPGG~Lvis~P 318 (615)
-.+. .+++.+..+.|++||.|.|...
T Consensus 237 G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 237 GKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 2221 3689999999999999999875
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.3e-07 Score=97.59 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=69.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEE--EEecCCCCCC--CCCCceEEEe-
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKRLPY--PSRSFELAHC- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~--~v~d~~~Lpf--pd~sFDlV~~- 285 (615)
++.+|||+|||+|..+..++.. .|+++|+++..+.... +.++..|+.+.+ ..+|....++ ++++||.|++
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 3468999999999988887753 5666766655544333 333334665444 4455544443 5678999985
Q ss_pred ---cc-cccccccc----------------hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 ---SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 ---s~-~~l~~~~d----------------~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+. .+++..++ ...+|.++.++|||||++++++-..
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 22 12333332 2469999999999999999988554
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.41 E-value=5e-07 Score=96.53 Aligned_cols=105 Identities=20% Similarity=0.392 Sum_probs=68.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHH------c----CCCcEEEEecCCC------CCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE------R----GIPSTLGVLGTKR------LPY 275 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~e------r----g~~~~~~v~d~~~------Lpf 275 (615)
+..+|||+|||-|.-..-...+ .++|+|++...+.++..+...- + ...+.+..+|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 5678999999988644444433 5678888777776665443110 0 1345667777532 222
Q ss_pred CCCCceEEEecccccccccch----HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 276 PSRSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 276 pd~sFDlV~~s~~~l~~~~d~----~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
....||+|-|.+ ++||.-.. ..+|..+...|+|||+|+.++|+.
T Consensus 142 ~~~~FDvVScQF-alHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQF-ALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHH-HHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 235999999998 58886332 459999999999999999999875
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-06 Score=89.24 Aligned_cols=120 Identities=19% Similarity=0.248 Sum_probs=79.0
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----C--CCcEEEEecCCCCC--CCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLP--YPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g--~~~~~~v~d~~~Lp--fpd~sFDlV~~s~ 287 (615)
..+|||+|||+|..+..++++. .-..+.++++++.+.++|++. + .++.+...|...+. ....+||+|+|+-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 5789999999999999998751 113444445556666666543 1 24778888876654 3345799999963
Q ss_pred ccc---------------cc--ccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEE
Q 007165 288 CRI---------------DW--LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (615)
Q Consensus 288 ~~l---------------~~--~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l 345 (615)
-.+ +| ..+.+.+++...++|||||++.+..|+. ...++.+++++..|..
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------rl~ei~~~l~~~~~~~ 189 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------RLAEIIELLKSYNLEP 189 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---------HHHHHHHHHHhcCCCc
Confidence 100 01 1124568899999999999999987653 2344556666666543
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-06 Score=87.00 Aligned_cols=101 Identities=16% Similarity=0.027 Sum_probs=71.0
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHH------------HHHcCCCcEEEEecCCCCCCC---CC
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQF------------ALERGIPSTLGVLGTKRLPYP---SR 278 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~------------A~erg~~~~~~v~d~~~Lpfp---d~ 278 (615)
..+||+.|||.|.-+.+|+++ .|+|+|+++.-+.....+. ...++..+.+.++|...++.. .+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 468999999999999999976 5666666554443321100 011355789999998888642 26
Q ss_pred CceEEEeccccccccc-ch-HHHHHHHHhccCCCeEEEEEc
Q 007165 279 SFELAHCSRCRIDWLQ-RD-GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 279 sFDlV~~s~~~l~~~~-d~-~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.||+|+-..+ +..++ +. .++.+.+.++|+|||.+++..
T Consensus 124 ~fD~VyDra~-~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 124 VFDIWYDRGA-YIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CcCeeeeehh-HhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 8999886553 44443 33 469999999999999988754
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.4e-06 Score=86.50 Aligned_cols=100 Identities=13% Similarity=0.138 Sum_probs=67.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc------CCCcEEEEecCCCC-CCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKRL-PYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er------g~~~~~~v~d~~~L-pfpd~sFDlV~~s~ 287 (615)
.+++|||||||+|.++..++... ....+...|+++.+++.|++. ..++.+.++|+... .-..++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 35789999999999999887541 223344446666666776654 13467788885432 22236899999643
Q ss_pred ccccc--cc---chHHHHHHHHhccCCCeEEEEEc
Q 007165 288 CRIDW--LQ---RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 288 ~~l~~--~~---d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++. .+ ....+++++.++|+|||.+++..
T Consensus 145 --~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 --FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred --CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 221 11 12579999999999999999954
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.3e-06 Score=94.68 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC----CCCCCceEEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP----YPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp----fpd~sFDlV~ 284 (615)
++.+|||+|||+|..+..++.. .|+++|++...+...+ +.+...|+ ++.+..+|+..++ +..++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~-~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQ-ENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHH-HHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 3468999999999998887643 4677766665554443 23333455 4678888887765 4467899999
Q ss_pred e----cc-cccccccc----------------hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 285 C----SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 285 ~----s~-~~l~~~~d----------------~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+ +. .+++..++ ...+|.++.++|||||+|+.++-..
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 5 21 12333232 3468999999999999999987443
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.2e-06 Score=91.28 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=64.0
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
..+|||||||+|.++..++.. .|+++|+++..+..+. +.+++.+. ++.+..+|....+...++||+|++.. .
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar-~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~-g 158 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV-G 158 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCChhhcccccCCccEEEECC-c
Confidence 468999999999999988753 3666766655444333 22233344 46777788666555557899999875 3
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++.. ...+.+.|+|||.+++..
T Consensus 159 ~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 159 VDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hHHh------HHHHHHhcCCCCEEEEEe
Confidence 4322 345678999999999865
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-06 Score=88.32 Aligned_cols=97 Identities=22% Similarity=0.346 Sum_probs=63.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc-----CCCcEEEEecCCCCCCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er-----g~~~~~~v~d~~~Lpfpd~sFDlV~~ 285 (615)
+..+|||+|||+|.++..++.. .++++|+++. +++.|++. ..++.+..+|... ++++++||+|++
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~-----~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~ 181 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPE-----ALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVS 181 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEE
Confidence 3468999999999999888753 4556655544 44444432 2357777777633 233578999998
Q ss_pred ccccc-----c--------c------------ccchHHHHHHHHhccCCCeEEEEEc
Q 007165 286 SRCRI-----D--------W------------LQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 286 s~~~l-----~--------~------------~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+.-.+ + + ......++.++.++|+|||++++..
T Consensus 182 npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 182 NPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 42100 0 0 0112457888899999999999965
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.9e-06 Score=85.28 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=65.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCC-CCCCCCCc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSF 280 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~-Lpfpd~sF 280 (615)
.+++||+||||+|.++..++.. +++++|+ ++.+++.|++. ...+.+...|... +....++|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~vei-----d~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~y 146 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDI-----DEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTF 146 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeC-----CHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCc
Confidence 3468999999999999888754 3445544 44554555442 1235566666432 12224789
Q ss_pred eEEEecccccccccc----hHHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 281 ELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 281 DlV~~s~~~l~~~~d----~~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
|+|++.. ..+..+. ...+++.+.++|+|||.+++.....+
T Consensus 147 DvIi~D~-~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~ 190 (270)
T TIGR00417 147 DVIIVDS-TDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPW 190 (270)
T ss_pred cEEEEeC-CCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcc
Confidence 9999754 2222221 24688999999999999999865543
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.6e-06 Score=94.60 Aligned_cols=104 Identities=19% Similarity=0.254 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEe---
Q 007165 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC--- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~--- 285 (615)
++.+|||+|||+|..+..+++ ..|+++|+++..+..+. +.+...|+ ++.+..+|+..++ ++++||+|++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 346899999999998877764 25777777666554443 33344465 3678888887765 5578999995
Q ss_pred -cccc-c------cccc----------chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 -SRCR-I------DWLQ----------RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 -s~~~-l------~~~~----------d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+... + .|.. ....+|.++.++|||||++++++-..
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2211 1 1111 12358999999999999999988554
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.3e-06 Score=86.08 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=69.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCCC--CCCCCCceE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL--PYPSRSFEL 282 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~L--pfpd~sFDl 282 (615)
.+++||+||||.|..+..+++. .+.. +.-.|+++.+++.|++. ..++.+..+|+... ..++++||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~--V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQ--IDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCe--EEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3578999999999999999865 2222 22234455555666553 23577888885332 123578999
Q ss_pred EEecccccccccc----hHHHHHHHHhccCCCeEEEEEcCCCCCC
Q 007165 283 AHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAH 323 (615)
Q Consensus 283 V~~s~~~l~~~~d----~~~~L~ei~RvLkPGG~Lvis~P~~~~~ 323 (615)
|++-. .-++.+. ...+++.+.++|+|||.++....+.|..
T Consensus 169 Ii~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~ 212 (308)
T PLN02366 169 IIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLH 212 (308)
T ss_pred EEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccc
Confidence 99743 2332221 1458999999999999999876655543
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.2e-06 Score=87.55 Aligned_cols=105 Identities=16% Similarity=0.106 Sum_probs=69.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEe---
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC--- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~--- 285 (615)
++.+|||+|||+|..+..++.. .|+++|+++..+.... +.+...++ ++.+...|...++...+.||.|++
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLI-ANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH-HHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 3468999999999998887642 4667766665554333 22233354 467777887766655567999985
Q ss_pred -ccc-cccccc----------------chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 -SRC-RIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 -s~~-~l~~~~----------------d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.. ++...+ ....+|.++.++|||||+++.++-..
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 211 111111 12348999999999999999987443
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.3e-06 Score=83.93 Aligned_cols=131 Identities=18% Similarity=0.333 Sum_probs=71.3
Q ss_pred CccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCc----hHHHHHhc--CCCc--cccCChhchhHHHHHHHH
Q 007165 186 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVA----SFGAYLLS--HDII--AMSLAPNDVHENQIQFAL 257 (615)
Q Consensus 186 ~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG----~~a~~L~~--~~V~--gvdis~~Dls~a~i~~A~ 257 (615)
+.|.+...++......+++...... ..++.-+|+..||++| +++..|.+ .... -+.|.+.|++...++.|+
T Consensus 3 T~FFRd~~~f~~l~~~vlp~~~~~~-~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar 81 (196)
T PF01739_consen 3 TYFFRDPEQFEALRDEVLPPLLARA-RPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR 81 (196)
T ss_dssp --TTTTTTHHHHHHHHHH--------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhhcccc-CCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH
Confidence 3455555555544445553111111 1124578999999999 44444444 1111 356677788888888876
Q ss_pred Hc--------CC-------------------------CcEEEEecCCCCCCCCCCceEEEecccccccccch--HHHHHH
Q 007165 258 ER--------GI-------------------------PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLE 302 (615)
Q Consensus 258 er--------g~-------------------------~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~--~~~L~e 302 (615)
+. ++ .+.|...|....+.+.+.||+|+|.+. +-|+... .+++..
T Consensus 82 ~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNV-lIYF~~~~~~~vl~~ 160 (196)
T PF01739_consen 82 AGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNV-LIYFDPETQQRVLRR 160 (196)
T ss_dssp HTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SS-GGGS-HHHHHHHHHH
T ss_pred hCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCE-EEEeCHHHHHHHHHH
Confidence 52 11 256777776663345588999999995 5565544 569999
Q ss_pred HHhccCCCeEEEEEcC
Q 007165 303 LDRLLRPGGYFVYSSP 318 (615)
Q Consensus 303 i~RvLkPGG~Lvis~P 318 (615)
+.+.|+|||+|++...
T Consensus 161 l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 161 LHRSLKPGGYLFLGHS 176 (196)
T ss_dssp HGGGEEEEEEEEE-TT
T ss_pred HHHHcCCCCEEEEecC
Confidence 9999999999999653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-05 Score=81.22 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=61.7
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC-CCC-CCCCceEEEeccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPY-PSRSFELAHCSRCRI 290 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~-Lpf-pd~sFDlV~~s~~~l 290 (615)
.+|||+|||+|.++..++.. +|+++|+++..+..++.+ +...+ ..+..+|... ++- ..++||+|+++--.+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N-~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN-LADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 57999999999999888743 466666555444333322 22223 4677777543 221 135799999753111
Q ss_pred -----c--------cc--------cc----hHHHHHHHHhccCCCeEEEEEcC
Q 007165 291 -----D--------WL--------QR----DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 291 -----~--------~~--------~d----~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
. +- .+ ...++..+.++|+|||.+++...
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 00 01 23577888899999999999764
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.8e-06 Score=87.20 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=70.0
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc------------CCCcEEEEecCCC-CCCCCCCce
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKR-LPYPSRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er------------g~~~~~~v~d~~~-Lpfpd~sFD 281 (615)
.+++||+||||+|..++.+++.. ....+...|+++.+++.|++. ..++.+.+.|+.. +.-..++||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45789999999999888887641 122344446667777777751 3467778888654 333457899
Q ss_pred EEEecccccccc---cc--hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 282 LAHCSRCRIDWL---QR--DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 282 lV~~s~~~l~~~---~d--~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+|++.. .-... .. ...++..+.+.|+|||.|++.....
T Consensus 229 VIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 229 VIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred EEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 999753 11111 11 1458999999999999999876433
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.8e-06 Score=94.05 Aligned_cols=105 Identities=15% Similarity=0.186 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCC-CCCCCceEEEe--
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP-YPSRSFELAHC-- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lp-fpd~sFDlV~~-- 285 (615)
++.+|||+|||+|..+.+++.. .|+++|+++..+.... +.+...|+. +.+...|+..++ +.+++||.|++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 3468999999999888777642 5667766665554433 233344553 678888887766 45678999986
Q ss_pred --ccc-cccccc----------------chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 --SRC-RIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 --s~~-~l~~~~----------------d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.. .+...+ ...++|.++.+.|||||.+++++-..
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 221 121111 12457899999999999999988543
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.6e-06 Score=84.25 Aligned_cols=112 Identities=16% Similarity=0.264 Sum_probs=78.9
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
....|-|+|||.+.++..-. ..|..+|+.+. +-.+..+|+.++|++|++.|++++..+ + .-.
T Consensus 180 ~~~vIaD~GCGEakiA~~~~-~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLS-L-Mgt 241 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSER-HKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLS-L-MGT 241 (325)
T ss_pred CceEEEecccchhhhhhccc-cceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHh-h-hcc
Confidence 34678999999998876221 25666765433 234567899999999999999987653 2 346
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEeeC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~~ 350 (615)
+...++.|++|+|+|||.++|+.--. +.+. -..+.+-+..+++.+.....
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~S--Rf~d----v~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKS--RFSD----VKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhh--hccc----HHHHHHHHHHcCCeeeehhh
Confidence 78889999999999999999976432 1111 12345556778887765544
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.8e-06 Score=84.82 Aligned_cols=123 Identities=18% Similarity=0.314 Sum_probs=78.8
Q ss_pred CccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC------CCccccCChhchhHHHHHHHHHc
Q 007165 186 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER 259 (615)
Q Consensus 186 ~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~------~V~gvdis~~Dls~a~i~~A~er 259 (615)
+.|.....-..+.+.+++..... ...+||+||||.|.....+++. .|.+.|+++ ..++..++.
T Consensus 48 ~rFfkdR~wL~~Efpel~~~~~~------~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp-----~Ai~~vk~~ 116 (264)
T KOG2361|consen 48 NRFFKDRNWLLREFPELLPVDEK------SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSP-----RAIELVKKS 116 (264)
T ss_pred ccccchhHHHHHhhHHhhCcccc------ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCCh-----HHHHHHHhc
Confidence 34455555566666677664432 2237999999999988888743 345665554 444555443
Q ss_pred CC----CcEEEEec--CC--CCCCCCCCceEEEecccccccc-cch-HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 260 GI----PSTLGVLG--TK--RLPYPSRSFELAHCSRCRIDWL-QRD-GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 260 g~----~~~~~v~d--~~--~Lpfpd~sFDlV~~s~~~l~~~-~d~-~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.. .+.-.+.| .. .-|.+.+++|+|++.++ +.-+ ++. ..++.++.++|||||.+++-+-..
T Consensus 117 ~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv-LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 117 SGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV-LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred cccchhhhcccceeccchhccCCCCcCccceEEEEEE-EeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 11 12222333 22 23466799999999884 4433 333 569999999999999999987443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.2e-06 Score=84.78 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=60.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
++.+|||||||+|.+++.|+.. .|++++..+.-...+...++. .+. ++.+..+|...---+...||.|++..+
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~-~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a 150 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR-LGIDNVEVVVGDGSEGWPEEAPFDRIIVTAA 150 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH-HTTHSEEEEES-GGGTTGGG-SEEEEEESSB
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH-hccCceeEEEcchhhccccCCCcCEEEEeec
Confidence 4578999999999999888742 356776665444333322222 244 678888885443224568999998763
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
..-+ -..+.+.|++||++++-..
T Consensus 151 -~~~i------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 151 -VPEI------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -BSS--------HHHHHTEEEEEEEEEEES
T ss_pred -cchH------HHHHHHhcCCCcEEEEEEc
Confidence 4422 2446778999999998553
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.3e-06 Score=86.82 Aligned_cols=97 Identities=9% Similarity=0.105 Sum_probs=68.1
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccc-
Q 007165 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR- 295 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d- 295 (615)
.+|||+|||+|.++..++.+. .+..+.+.|+++.+++.++++..++.+..+|+..+.. +++||+|+++-. +++...
T Consensus 66 grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPP-F~~l~~~ 142 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPP-FGKINTT 142 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCC-ccccCch
Confidence 579999999999988876531 1234444466667777777765568888899877653 478999998653 333211
Q ss_pred -------------------hHHHHHHHHhccCCCeEEEEE
Q 007165 296 -------------------DGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 296 -------------------~~~~L~ei~RvLkPGG~Lvis 316 (615)
...++....++|+|+|.+.+.
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 135677888999999977664
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.3e-06 Score=84.91 Aligned_cols=99 Identities=19% Similarity=0.314 Sum_probs=68.5
Q ss_pred eEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC-CC--CCCCCceEEEeccccc
Q 007165 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP--YPSRSFELAHCSRCRI 290 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~-Lp--fpd~sFDlV~~s~~~l 290 (615)
.+||||||.|.+...++.. +++|+|+...-+..+..+..+....++.+..+|+.. +. ++++++|.|+..+ --
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-PD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF-PD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-CC
Confidence 7999999999999998843 677888877666655543333333467888888766 32 5679999999766 34
Q ss_pred ccccch--------HHHHHHHHhccCCCeEEEEEc
Q 007165 291 DWLQRD--------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 291 ~~~~d~--------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.|.... ..++..+.++|+|||.|.+.+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 444321 359999999999999999976
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.9e-06 Score=93.03 Aligned_cols=105 Identities=17% Similarity=0.047 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc------------CCCcEEEEecCCCC-CCCCCCce
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKRL-PYPSRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er------------g~~~~~~v~d~~~L-pfpd~sFD 281 (615)
++++|||||||+|..+..+++.. ....+...|+++.+++.+++. ..++.+...|.... ...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45789999999999999887641 112344446667777777762 13567778886542 22347899
Q ss_pred EEEecccccccccch-----HHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 282 LAHCSRCRIDWLQRD-----GILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 282 lV~~s~~~l~~~~d~-----~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
+|++.. ..+..+.. .++++.+.+.|+|||.+++...+.+
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~ 419 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY 419 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 999764 23332221 3588999999999999999775443
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.2e-05 Score=82.02 Aligned_cols=94 Identities=24% Similarity=0.320 Sum_probs=71.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCCCCCCCceEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELA 283 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lpfpd~sFDlV 283 (615)
++.+|||.|.|+|.++.+|+.. +|++.+ ..+...+.|+++ ++ .+.+...|....-+++ .||+|
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE-----~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav 167 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYE-----IREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAV 167 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEE-----ecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEE
Confidence 4578999999999999999843 555554 444555555443 32 3677778877766664 89999
Q ss_pred EecccccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 284 ~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+. . +++|-.++..+..+|+|||.+++-.|..
T Consensus 168 ~L-----D-mp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 168 FL-----D-LPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred EE-----c-CCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 83 2 4789999999999999999999998876
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.8e-06 Score=80.84 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=63.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHH----cCC-CcEEEEecCC-CCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE----RGI-PSTLGVLGTK-RLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~e----rg~-~~~~~v~d~~-~Lpfpd~sFDlV~~s 286 (615)
++.+|||||||+|+.++.|++- +|.+++..+ ...+.|++ .|. ++.+.++|.. .+| +...||.|+..
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~-----~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~aPyD~I~Vt 145 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLVGRVVSIERIE-----ELAEQARRNLETLGYENVTVRHGDGSKGWP-EEAPYDRIIVT 145 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHhCeEEEEEEcH-----HHHHHHHHHHHHcCCCceEEEECCcccCCC-CCCCcCEEEEe
Confidence 4578999999999999988854 566665544 44444433 355 6788888843 344 44789999987
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.+ ...+| ..+.+.|+|||++++-.-
T Consensus 146 aa-a~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 146 AA-APEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ec-cCCCC------HHHHHhcccCCEEEEEEc
Confidence 63 44443 334678999999998653
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=90.72 Aligned_cols=113 Identities=11% Similarity=0.141 Sum_probs=68.9
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-----CCchhHHhhcccccccccccccC----CCCC-Cccceecc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-----SARLKIIYDRGLIGTVHDWCESF----STYP-RTYDLLHA 527 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-----~~tL~~iy~RGliG~~hdwce~f----stYp-rtyDl~Ha 527 (615)
.=.-++|..+|.|+|.+++... |-+ |++=++- -..+.-+.++||-.+. =.|..+ .-+| .+-|-||-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~--~~iGiE~~~~~~~~~~~~~~~~~l~N~~-~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDA--LFIGVEVYLNGVANVLKLAGEQNITNFL-LFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCC--CEEEEEeeHHHHHHHHHHHHHcCCCeEE-EEcCCHHHHHHhcCcccccEEEE
Confidence 3477999999999999999744 321 4444432 1455667777763221 122222 1222 45555543
Q ss_pred cccccc------cccCCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhh
Q 007165 528 WKVFSE------IEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITA 576 (615)
Q Consensus 528 ~~~fs~------~~~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~ 576 (615)
. |.+ -.+||=--.+.|-+|-|+|+|||.+-++ |..+..+.+...+..
T Consensus 424 ~--FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~ 477 (506)
T PRK01544 424 L--FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQ 477 (506)
T ss_pred E--CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 2 332 1245556678889999999999999886 666666665555443
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.1e-06 Score=84.34 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=76.0
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC---CCCCCceEEEeccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP---YPSRSFELAHCSRC 288 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp---fpd~sFDlV~~s~~ 288 (615)
..+||||||.|.+...++.+ .++|+++...-+..+. +.+.+.++ ++.+...|+..+- +++++.|-|+..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 46999999999999999865 6677777665554443 66777888 8999988865432 45669999997763
Q ss_pred ccccccch--------HHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRD--------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~--------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-.|.... ..++..+.++|+|||.|.+.+
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5554322 349999999999999999976
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.4e-05 Score=76.96 Aligned_cols=93 Identities=13% Similarity=0.049 Sum_probs=62.8
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
..+|||+|||+|.++..++++ +++++|+ ++.+++.++++ ..++.+..+|+..+++++.+||.|+++- -+
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~-----~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py 87 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAARVTAIEI-----DPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL-PY 87 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCCeEEEEEC-----CHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC-Cc
Confidence 468999999999999999875 4555655 44555555444 2357888999999988877899998653 23
Q ss_pred ccccchHHHHHHHHh--ccCCCeEEEEEc
Q 007165 291 DWLQRDGILLLELDR--LLRPGGYFVYSS 317 (615)
Q Consensus 291 ~~~~d~~~~L~ei~R--vLkPGG~Lvis~ 317 (615)
+.. ...+..+.+ .+.++|.|++..
T Consensus 88 ~~~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 88 NIS---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred ccH---HHHHHHHHhcCCCcceEEEEEEH
Confidence 321 223333332 245888888754
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1e-05 Score=89.74 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=67.9
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC--CCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp--fpd~sFDlV~~s~ 287 (615)
+.+|||+|||+|..+..++.. .|+++|+++..+.... +.+...|+ ++.+..+|...++ ++ ++||+|++.-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~ 328 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDA 328 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcC
Confidence 468999999999999887753 4667766655543333 23333454 3677888876653 33 7899999631
Q ss_pred -c----cccccc---------c-------hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 288 -C----RIDWLQ---------R-------DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 288 -~----~l~~~~---------d-------~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
| .+...+ + ...+|.++.++|||||.+++++-..
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 0 111111 0 1347999999999999999877443
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.2e-06 Score=83.25 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=69.5
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
.+.++|||||+|.|.++..++.+. ..+.+.-.|+ +..++.+++ ..++.+..+|.. -++|. +|+++..++ +|..
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~v-Lh~~ 171 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHV-LHDW 171 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESS-GGGS
T ss_pred cCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehh-hhhc
Confidence 345789999999999999998651 1222333344 334455555 667899999976 56665 999999995 6655
Q ss_pred cch--HHHHHHHHhccCCC--eEEEEEcC
Q 007165 294 QRD--GILLLELDRLLRPG--GYFVYSSP 318 (615)
Q Consensus 294 ~d~--~~~L~ei~RvLkPG--G~Lvis~P 318 (615)
++. ..+|+++++.|+|| |+|+|.++
T Consensus 172 ~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 172 SDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp -HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 554 46999999999999 99999874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.2e-05 Score=82.39 Aligned_cols=125 Identities=13% Similarity=0.169 Sum_probs=78.5
Q ss_pred CCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCc----hHHHHHhcC--C-CccccCChhchhHHHHHHH
Q 007165 184 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVA----SFGAYLLSH--D-IIAMSLAPNDVHENQIQFA 256 (615)
Q Consensus 184 gg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG----~~a~~L~~~--~-V~gvdis~~Dls~a~i~~A 256 (615)
+.+.|.+...++......+.. ....-+|+..||++| +++..|.+. . -..+.|.+.|++...++.|
T Consensus 92 neT~FFRd~~~f~~L~~~~~~--------~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~A 163 (287)
T PRK10611 92 NLTAFFREAHHFPILAEHARR--------RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKA 163 (287)
T ss_pred CCCCccCCcHHHHHHHHHHHh--------cCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHH
Confidence 345666666665543332211 112368999999999 444444442 0 0124566667777777766
Q ss_pred HHc--------C----------------------------CCcEEEEecCCCCCCC-CCCceEEEecccccccccc--hH
Q 007165 257 LER--------G----------------------------IPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQR--DG 297 (615)
Q Consensus 257 ~er--------g----------------------------~~~~~~v~d~~~Lpfp-d~sFDlV~~s~~~l~~~~d--~~ 297 (615)
++. + -.+.|...|....+++ .+.||+|+|.++ +.|+.. ..
T Consensus 164 r~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNv-liyF~~~~~~ 242 (287)
T PRK10611 164 RSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNV-MIYFDKTTQE 242 (287)
T ss_pred HhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhH-HhcCCHHHHH
Confidence 543 0 0145666666554443 578999999985 555533 46
Q ss_pred HHHHHHHhccCCCeEEEEEc
Q 007165 298 ILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 298 ~~L~ei~RvLkPGG~Lvis~ 317 (615)
+++..+.+.|+|||+|++-.
T Consensus 243 ~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 243 RILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred HHHHHHHHHhCCCcEEEEeC
Confidence 79999999999999998854
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.04 E-value=2e-05 Score=80.26 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=64.3
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCC-C-----CCCCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-----YPSRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~L-p-----fpd~sFDl 282 (615)
.++|||+|||+|..+..++.. +++++|+.+.....+. +...+.|+ .+.+..+|+... + .++++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~-~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL-EFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 578999999999877666532 5677766654443333 22233354 467788876442 2 12468999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
|++-.. -+....++.++.++|||||.+++..
T Consensus 148 VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 985431 2334568999999999999988754
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.3e-05 Score=80.32 Aligned_cols=135 Identities=19% Similarity=0.268 Sum_probs=81.4
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc-----CCCcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er-----g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
....++||.|+|.|..+..|+-.....+|+. +..+..++.|++. ..-..+.+...+++..+.++||+|++-.|
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 3567899999999999998875433344443 4556666677643 22246667777777655689999999996
Q ss_pred ccccccch--HHHHHHHHhccCCCeEEEEEcCCCC----CCChhH---HHHHHHHHHHHhhcceEEEEeeCc
Q 007165 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAY----AHDPEN---RRIWNAMYDLLKSMCWKIVSKKDQ 351 (615)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~~~----~~~~e~---~~~w~~l~~La~~l~W~l~~~~~~ 351 (615)
+.|+.|. -.+|+++...|+|||.+++-....- .-++++ .+.-..+..+.++....++....|
T Consensus 132 -lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 132 -LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred -hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 6666655 4699999999999999998442110 011111 123456778888888887765544
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.8e-05 Score=80.58 Aligned_cols=96 Identities=9% Similarity=0.092 Sum_probs=65.5
Q ss_pred CCeEEEECCCCchHHHHHhcCC--CccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccc---
Q 007165 216 IRNVLDVGCGVASFGAYLLSHD--IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI--- 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~--V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l--- 290 (615)
..+|||+|||+|.++..++... .....+.+.|+++.+++.|++....+.+...|+...++ +++||+|+++-=..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 3689999999999998876430 01234555677777778887766668888889876665 46899999863111
Q ss_pred --ccc------cchHHHHHHHHhccCCCeE
Q 007165 291 --DWL------QRDGILLLELDRLLRPGGY 312 (615)
Q Consensus 291 --~~~------~d~~~~L~ei~RvLkPGG~ 312 (615)
+.. .-...++..+.++++||+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 000 0123478888898888776
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.2e-05 Score=67.31 Aligned_cols=99 Identities=30% Similarity=0.440 Sum_probs=65.0
Q ss_pred EEEECCCCchHH--HHHhcC--CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCC--CCCCC-CCceEEEeccccc
Q 007165 219 VLDVGCGVASFG--AYLLSH--DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKR--LPYPS-RSFELAHCSRCRI 290 (615)
Q Consensus 219 VLDIGCGtG~~a--~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~--Lpfpd-~sFDlV~~s~~~l 290 (615)
+||+|||+|... ..+... .++++|++...+.... ......+.. +.+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALAR-ARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHH-hhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999854 333332 3455555554443311 111111111 4667777665 78877 489999 666556
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++.. ....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 6555 7889999999999999999987654
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.5e-05 Score=74.78 Aligned_cols=96 Identities=19% Similarity=0.144 Sum_probs=66.6
Q ss_pred CCCeEEEECCCCchHHHHHh----cCCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCC-CCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR-LPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~----~~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~-Lpfpd~sFDlV~~s~~ 288 (615)
+..+++|||||+|+.+..++ ..+|+++|-.+..+..-. +.++..|. ++.+..+++.. |+ ...+||.|+....
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~-~~~~~daiFIGGg 111 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALP-DLPSPDAIFIGGG 111 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhc-CCCCCCEEEECCC
Confidence 34689999999999998887 236777765544333222 22333344 46777777543 33 2227999997763
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
...+.+|+.+...|||||++++..
T Consensus 112 -----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 112 -----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred -----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 456789999999999999999865
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.9e-05 Score=91.03 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=68.5
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCCC-CCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRL-PYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~L-pfpd~sFDlV~~s~~ 288 (615)
+++|||+|||+|.++..++.. .|+++|+++..+..+..+. ...++ .+.+..+|+.+. .-..++||+|++.--
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~-~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNF-ALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 468999999999999998854 4777777666655444333 22344 477888885432 111468999998421
Q ss_pred c----------cccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 R----------IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~----------l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
. .....+...++..+.++|+|||.++++.-
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 1 11122345688889999999999988653
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=73.42 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=57.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcE-EEEecCCC-----CCCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKR-----LPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~-~~v~d~~~-----Lpfpd~sFDlV~~ 285 (615)
...+|||+|||+|.|+..+++. .|+++|++..++.. .......+. +...++.. .+..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~-----~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE-----KLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH-----HHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 4568999999999999999865 56777666554433 222222221 23333332 2212246888877
Q ss_pred cccccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.+ ..|..+.++|+| |.+++-.-+.
T Consensus 150 S~~---------~~l~~i~~~l~~-~~~~~L~KPq 174 (228)
T TIGR00478 150 SLI---------SILPELDLLLNP-NDLTLLFKPQ 174 (228)
T ss_pred ehH---------hHHHHHHHHhCc-CeEEEEcChH
Confidence 653 258889999999 8877665444
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.4e-05 Score=83.70 Aligned_cols=102 Identities=14% Similarity=0.106 Sum_probs=65.5
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCCCC--C--CCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLP--Y--PSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~Lp--f--pd~sFDlV~~ 285 (615)
+++|||+|||+|.++...+.. .|+++|+++..+..+. +.+...++ .+.+..+|+.... + ..++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~-~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 468999999999998765432 5777777666555444 22333344 4678888865431 1 2468999997
Q ss_pred ccccccc--------ccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 286 SRCRIDW--------LQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 286 s~~~l~~--------~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.--.+.- ..+...++..+.++|+|||.|+..+-
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 6321110 01223456678899999999998663
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.4e-05 Score=83.03 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=64.5
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCC----CCCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR----LPYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~----Lpfpd~sFDlV~~s~~ 288 (615)
..+|||+|||+|.++..|+.. .|+++|+++.++..+. +.+...++ ++.+..+|+.. +++.+++||+|++.-
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~-~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP- 375 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERAR-ENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP- 375 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc-
Confidence 468999999999999999864 5667766666555444 22333344 57888888643 345567899998643
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.+.. ....+..+.+ ++|++.++++.
T Consensus 376 --Pr~g-~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 376 --PRAG-AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred --CCcC-hHHHHHHHHh-cCCCeEEEEEe
Confidence 1211 2345555555 69999999986
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.3e-05 Score=78.02 Aligned_cols=97 Identities=23% Similarity=0.197 Sum_probs=65.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHH-HHcCC----------------CcEEEEecCCCCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFA-LERGI----------------PSTLGVLGTKRLPYPS 277 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A-~erg~----------------~~~~~v~d~~~Lpfpd 277 (615)
...+||+.|||.|.-+.+|+++ |.++.+.|+++..++.+ .+.+. .+.+.++|...++-..
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 3468999999999999999986 34444555566666655 33322 2467788887776433
Q ss_pred -CCceEEEecccccccc-cch-HHHHHHHHhccCCCeEEEE
Q 007165 278 -RSFELAHCSRCRIDWL-QRD-GILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 278 -~sFDlV~~s~~~l~~~-~d~-~~~L~ei~RvLkPGG~Lvi 315 (615)
++||+|+=..+ +.-+ ++. .++.+.+.++|+|||.+++
T Consensus 114 ~g~fD~iyDr~~-l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 114 VGKFDLIYDRTF-LCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp HHSEEEEEECSS-TTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred cCCceEEEEecc-cccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 57999985442 3333 333 5699999999999999443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.1e-05 Score=83.78 Aligned_cols=98 Identities=18% Similarity=0.318 Sum_probs=79.2
Q ss_pred CeEEEECCCCchHHHHHh---cCCCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 217 RNVLDVGCGVASFGAYLL---SHDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~---~~~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
..++|+|||.|....++. ..++.+++.++.....+...... .++ ...+...+....||++++||.+.+.. +..
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld-~~~ 189 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-AYLDNKCNFVVADFGKMPFEDNTFDGVRFLE-VVC 189 (364)
T ss_pred ccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-HHhhhhcceehhhhhcCCCCccccCcEEEEe-ecc
Confidence 368999999998888776 35788888888777666533332 222 24457778899999999999999988 689
Q ss_pred cccchHHHHHHHHhccCCCeEEEEE
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
|.++...++.|+.|+++|||+++..
T Consensus 190 ~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 190 HAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999999999999999999999974
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00016 Score=75.16 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=89.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----C----------------------------
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----G---------------------------- 260 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g---------------------------- 260 (615)
...+||--|||.|.++..++.. .+.|.+++..|+-.. ++.... +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4468999999999999999876 344555554443111 222221 0
Q ss_pred ----------CCcEEEEecCCCCCCCC---CCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChh-
Q 007165 261 ----------IPSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE- 326 (615)
Q Consensus 261 ----------~~~~~~v~d~~~Lpfpd---~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e- 326 (615)
.+.....+|...+..++ ++||+|++.+ .+.-.++.-.++..+.++|||||+++=..|--|+..+.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 00122233333332233 6999999887 57777777889999999999999888888877764433
Q ss_pred ------HHHHHHHHHHHHhhcceEEEEeeC
Q 007165 327 ------NRRIWNAMYDLLKSMCWKIVSKKD 350 (615)
Q Consensus 327 ------~~~~w~~l~~La~~l~W~l~~~~~ 350 (615)
..-.|+++..++++++|+...++.
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 223689999999999999886554
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.8e-05 Score=79.04 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=67.0
Q ss_pred eEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+|||+|||+|..+..++.. .|+++|+++.-+.-+. +.|...++ ++.+...|... +.. ++||+|+|+---+..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~~dlf~-~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQSDLFE-PLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEeeeccc-ccC-CceeEEEeCCCCCCC
Confidence 7999999999999998854 5666666554443333 23333453 23333333211 122 489999985211111
Q ss_pred c-----c-------------------chHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcc
Q 007165 293 L-----Q-------------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 342 (615)
Q Consensus 293 ~-----~-------------------d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~ 342 (615)
- + -...++.++.+.|+|||.+++..-.. . -..+.++....+
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~--q-------~~~v~~~~~~~~ 254 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT--Q-------GEAVKALFEDTG 254 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC--c-------HHHHHHHHHhcC
Confidence 0 0 11347889999999999999976322 1 134556666655
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00011 Score=76.37 Aligned_cols=131 Identities=15% Similarity=0.252 Sum_probs=80.4
Q ss_pred CCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCc----hHHHHHhcCCC----ccccCChhchhHHHHHH
Q 007165 184 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVA----SFGAYLLSHDI----IAMSLAPNDVHENQIQF 255 (615)
Q Consensus 184 gg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG----~~a~~L~~~~V----~gvdis~~Dls~a~i~~ 255 (615)
.-|.|.+...++...-...++..... .. ...-+|+-.||++| +.+..|.+... ..+.|.+.|++...++.
T Consensus 67 n~T~FFR~~~~f~~l~~~v~p~l~~~-~~-~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~ 144 (268)
T COG1352 67 NVTEFFRDPEHFEELRDEVLPELVKR-KK-GRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEK 144 (268)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhh-cc-CCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHH
Confidence 34556666666655444444311100 01 13578999999999 44444444321 24556666777777776
Q ss_pred HHHc---------CCC-------------------------cEEEEecCCCCCCCCCCceEEEecccccccccch--HHH
Q 007165 256 ALER---------GIP-------------------------STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GIL 299 (615)
Q Consensus 256 A~er---------g~~-------------------------~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~--~~~ 299 (615)
|+.. +++ +.|...|...-++..+.||+|+|-+ ++-|+..+ .++
T Consensus 145 A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRN-VLIYFd~~~q~~i 223 (268)
T COG1352 145 ARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRN-VLIYFDEETQERI 223 (268)
T ss_pred HhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcc-eEEeeCHHHHHHH
Confidence 6532 111 3444455433332447899999999 56666544 569
Q ss_pred HHHHHhccCCCeEEEEEc
Q 007165 300 LLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 300 L~ei~RvLkPGG~Lvis~ 317 (615)
+..++..|+|||+|++-.
T Consensus 224 l~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 224 LRRFADSLKPGGLLFLGH 241 (268)
T ss_pred HHHHHHHhCCCCEEEEcc
Confidence 999999999999999954
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00028 Score=75.23 Aligned_cols=98 Identities=20% Similarity=0.330 Sum_probs=57.4
Q ss_pred CcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCC--c
Q 007165 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP--S 263 (615)
Q Consensus 190 ~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~--~ 263 (615)
++...|+..+.+++........+.+...++||||||+|.....|+.+ .++++|+++..+..++...++..++. +
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 34677898888887643221122234578999999999777666543 56667666655555443333221333 3
Q ss_pred EEEE-ecCCCC----CCCCCCceEEEecc
Q 007165 264 TLGV-LGTKRL----PYPSRSFELAHCSR 287 (615)
Q Consensus 264 ~~~v-~d~~~L----pfpd~sFDlV~~s~ 287 (615)
.+.. .+...+ ..+.+.||+|+|+-
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNP 197 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNP 197 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCC
Confidence 4432 222221 12467899999875
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00019 Score=71.51 Aligned_cols=132 Identities=13% Similarity=0.058 Sum_probs=73.7
Q ss_pred CCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHH
Q 007165 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQ 252 (615)
Q Consensus 176 g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~ 252 (615)
|-.+..|.+. .+....+...+.+.+.+... ....+|||+|||+|.++..++.+ .|+++|.++.....+.
T Consensus 22 g~~l~~~~~~-~~Rp~~d~v~e~l~~~l~~~-------~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~ 93 (199)
T PRK10909 22 GRKLPVPDSP-GLRPTTDRVRETLFNWLAPV-------IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI 93 (199)
T ss_pred CCEeCCCCCC-CcCcCCHHHHHHHHHHHhhh-------cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 3444444322 23445555555555544311 12358999999999999864432 5666665544333222
Q ss_pred HHHHHHcCC-CcEEEEecCCC-CCCCCCCceEEEecccccccccc-hHHHHHHHHh--ccCCCeEEEEEcCC
Q 007165 253 IQFALERGI-PSTLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQR-DGILLLELDR--LLRPGGYFVYSSPE 319 (615)
Q Consensus 253 i~~A~erg~-~~~~~v~d~~~-Lpfpd~sFDlV~~s~~~l~~~~d-~~~~L~ei~R--vLkPGG~Lvis~P~ 319 (615)
+.++..+. ++.+...|+.. ++...++||+|++.- .|... ...++..+.. +|+|+|.+++..+.
T Consensus 94 -~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP---Py~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 94 -KNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP---PFRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred -HHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECC---CCCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 22222343 46777777543 322345799999654 22222 2345555544 48999999998654
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.3e-05 Score=74.83 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=65.0
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCC-CC-----CCCCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-----YPSRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~-Lp-----fpd~sFDl 282 (615)
+++||+||+++|..+.+++.. +|+++++.+.....+. +..++.|. .+.+..+|+.. ++ .+.++||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 478999999999999998853 5667766654433332 33334454 47778877543 22 12368999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
|+.-. .-.+...++..+.++|+|||.+++..
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 99543 22345668888999999999999865
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.72 E-value=7e-05 Score=72.81 Aligned_cols=102 Identities=20% Similarity=0.166 Sum_probs=58.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcC----CCcEEEEecCCC-C--C-CCCCCceE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKR-L--P-YPSRSFEL 282 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg----~~~~~~v~d~~~-L--p-fpd~sFDl 282 (615)
.+.+|||+|||+|..+..++.. .|+..|..+ .-+.....++..+ ..+.+...+-.. . . ...++||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 4578999999999777666543 566666654 2222222222222 334555554222 1 1 23468999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|+++-+ +......+.++.-+.++|+|+|.++++.+.
T Consensus 123 IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 123 ILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999995 555566678999999999999998887754
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00016 Score=74.42 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=65.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHH----cCC--CcEEEEecCCCCCCC---CCCc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALE----RGI--PSTLGVLGTKRLPYP---SRSF 280 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~e----rg~--~~~~~v~d~~~Lpfp---d~sF 280 (615)
++.+|||.|.|+|+++.+|+.. .|...++ ++...+.|++ .|+ .+.+...|...-.|+ ++.|
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~-----~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEF-----REDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEES-----SHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEcccc-----CHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 4578999999999999999853 4555554 4444444433 354 478888887544442 3679
Q ss_pred eEEEecccccccccchHHHHHHHHhcc-CCCeEEEEEcCCC
Q 007165 281 ELAHCSRCRIDWLQRDGILLLELDRLL-RPGGYFVYSSPEA 320 (615)
Q Consensus 281 DlV~~s~~~l~~~~d~~~~L~ei~RvL-kPGG~Lvis~P~~ 320 (615)
|.|+ |. +++|-.++..+.++| ||||++++-.|..
T Consensus 115 Davf-----LD-lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 115 DAVF-----LD-LPDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp EEEE-----EE-SSSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred cEEE-----Ee-CCCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 9998 32 477888999999999 9999999999876
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.4e-05 Score=78.88 Aligned_cols=100 Identities=24% Similarity=0.323 Sum_probs=68.0
Q ss_pred CCCCeEEEECCCCchHHHHH--hcCCCccccCChhchhHHHHHHHHHc----CC-CcEEE-EecCCCCCCCCCCceEEEe
Q 007165 214 GNIRNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLG-VLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L--~~~~V~gvdis~~Dls~a~i~~A~er----g~-~~~~~-v~d~~~Lpfpd~sFDlV~~ 285 (615)
.++..|||==||||++.... .+.+++|.| ++..|++-|+.+ ++ ...+. ..|+..+|+++++||.|++
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~D-----id~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSD-----IDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecc-----hHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe
Confidence 34568999999999886543 355566665 455555554432 32 23334 4499999999999999998
Q ss_pred cc----c-cccc--ccc-hHHHHHHHHhccCCCeEEEEEcC
Q 007165 286 SR----C-RIDW--LQR-DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 286 s~----~-~l~~--~~d-~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
-- . ...- +.+ ...+|..+.++|++||++++..|
T Consensus 271 DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 271 DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 21 0 0111 112 25689999999999999999988
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00013 Score=76.23 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=65.5
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCC-CC-C----CCCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-Y----PSRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~-Lp-f----pd~sFDl 282 (615)
+++|||||+|+|..+.+++.. .++++|..+.....+. +..++.|. .+.+..+|+.. |+ + ..++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar-~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK-RYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 578999999999999988753 4666766654443333 22234455 47777777533 22 1 1368999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
|+.-. .-.+...++..+.++|+|||.+++..
T Consensus 198 VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 198 AFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 99443 12344678899999999999998854
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00015 Score=73.49 Aligned_cols=97 Identities=22% Similarity=0.376 Sum_probs=60.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC---CcEEE---------------------
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI---PSTLG--------------------- 266 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~---~~~~~--------------------- 266 (615)
.+..+|||||..|.++..+++. .+.|+||.+. .++.|++..- ..+..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~-----LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPV-----LIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHH-----HHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 3467999999999999888753 6777766554 4455554310 00000
Q ss_pred --------------------Eec-CCCCCCCCCCceEEEeccc----ccccccc-hHHHHHHHHhccCCCeEEEEE
Q 007165 267 --------------------VLG-TKRLPYPSRSFELAHCSRC----RIDWLQR-DGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 267 --------------------v~d-~~~Lpfpd~sFDlV~~s~~----~l~~~~d-~~~~L~ei~RvLkPGG~Lvis 316 (615)
+.+ .+-+.+....||+|.|... -|.|-++ ..++|+.+.++|.|||+|++.
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000 0011234567999998652 1333333 357999999999999999983
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00018 Score=76.42 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=64.5
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCC-CCCCceEEEecccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpf-pd~sFDlV~~s~~~l~ 291 (615)
..+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..++ ++.+.++|+..+.. ..++||+|++.--
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP--- 249 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP--- 249 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC---
Confidence 368999999999999999864 5777777666554443 33344455 47899998766542 3457999996531
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.. .....+.++..-++|++.++++..+
T Consensus 250 r~-G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 250 RR-GIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred CC-CccHHHHHHHHHcCCCeEEEEECCc
Confidence 11 1122333344447888888887643
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00018 Score=79.58 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=63.6
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCC----CCCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR----LPYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~----Lpfpd~sFDlV~~s~~ 288 (615)
..+|||+|||+|.++..|+.. .|+++|+++..+..+.. .+...++ ++.+..+|+.. +++.+++||+|++.--
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~-n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQ-NAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP 371 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHH-HHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC
Confidence 368999999999999999864 57777776655544442 2333344 57888888654 2344568999986431
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
...-...++..+.+ |+|++.++++.
T Consensus 372 ---r~G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 372 ---RKGCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred ---CCCCCHHHHHHHHh-cCCCEEEEEcC
Confidence 11112446666554 89999888864
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00011 Score=82.91 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCC--CCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL--PYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~L--pfpd~sFDlV~~s~ 287 (615)
....+||||||.|.+...++.. +++|+++...-+..+. ..+.+.++ ++.+...|+..+ -++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3568999999999999999854 6778887765544443 34445555 455555554322 26789999999776
Q ss_pred cccccccch--------HHHHHHHHhccCCCeEEEEEc
Q 007165 288 CRIDWLQRD--------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 288 ~~l~~~~d~--------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
--.|.... ..++..+.++|+|||.+.+.+
T Consensus 426 -PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 -PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred -CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 35564321 349999999999999999976
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00026 Score=70.95 Aligned_cols=118 Identities=16% Similarity=0.261 Sum_probs=75.9
Q ss_pred CCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCC---CCCceEEEecccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP---SRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfp---d~sFDlV~~s~~~l~ 291 (615)
.-++|||||=.......-... .|+.+|+.+.+ ..+.+.|....|.| ++.||+|.||. ++.
T Consensus 52 ~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~---------------~~I~qqDFm~rplp~~~~e~FdvIs~SL-VLN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSGWFDVTRIDLNSQH---------------PGILQQDFMERPLPKNESEKFDVISLSL-VLN 115 (219)
T ss_pred cceEEeecccCCCCcccccCceeeEEeecCCCC---------------CCceeeccccCCCCCCcccceeEEEEEE-EEe
Confidence 368999998644332221111 34555443321 12355676666653 67999999998 799
Q ss_pred cccch---HHHHHHHHhccCCCeE-----EEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEeeC
Q 007165 292 WLQRD---GILLLELDRLLRPGGY-----FVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (615)
Q Consensus 292 ~~~d~---~~~L~ei~RvLkPGG~-----Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~~ 350 (615)
++|++ ...+..+.+.|+|+|. |+++.|..=..+.-- -.-+.+..+.+.+++..+..+.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy-~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRY-MTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccc-cCHHHHHHHHHhCCcEEEEEEe
Confidence 99988 4599999999999999 998887641111000 0124566788888887776543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00028 Score=85.40 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=66.2
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc--------------C--CCcEEEEecCCCCCC
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER--------------G--IPSTLGVLGTKRLPY 275 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er--------------g--~~~~~~v~d~~~Lpf 275 (615)
..+|||+|||+|..+..++.. .|+++|+++..+..+..+..+.. + .++.+..+|.....-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 357999999999999988753 57788777766655543332210 0 147888888654321
Q ss_pred C-CCCceEEEeccc-------------ccccc--------------------cc----hHHHHHHHHhccCCCeEEEEEc
Q 007165 276 P-SRSFELAHCSRC-------------RIDWL--------------------QR----DGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 276 p-d~sFDlV~~s~~-------------~l~~~--------------------~d----~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
. ...||+|+++-- +..+- .| ..+++.++.++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 136999998521 00010 01 1457888899999999999866
Q ss_pred C
Q 007165 318 P 318 (615)
Q Consensus 318 P 318 (615)
-
T Consensus 279 G 279 (1082)
T PLN02672 279 G 279 (1082)
T ss_pred C
Confidence 3
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.56 E-value=8.4e-05 Score=78.96 Aligned_cols=98 Identities=16% Similarity=0.261 Sum_probs=65.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+.++|||||||+|.++..-+++ +|.+++.+... .-..+.++..+.. +++..+.++++.+|-.++|+|++-.+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 4578999999999887776643 78888776543 3333555666654 455666677666667899999975421
Q ss_pred c--ccccchHHHHHHHHhccCCCeEEE
Q 007165 290 I--DWLQRDGILLLELDRLLRPGGYFV 314 (615)
Q Consensus 290 l--~~~~d~~~~L~ei~RvLkPGG~Lv 314 (615)
. -+-.-...+|-.=.+.|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 1 111122445666689999999887
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00025 Score=71.55 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=63.9
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCC--cEEEE-ecCC-CCC-CCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP--STLGV-LGTK-RLP-YPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v-~d~~-~Lp-fpd~sFDlV~~ 285 (615)
+++|||||.+.|..+.+|+.. +++++|+.+.....+...+ ++.|+. +.... +|+. .+. ...++||+|+.
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~-~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENL-AEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHH-HHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 578999999999999998743 4666666554443333222 233543 44444 3532 222 44689999994
Q ss_pred cccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-. .-.+...++..+.++|||||.+++..
T Consensus 139 Da----dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 139 DA----DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred eC----ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 32 23445679999999999999999854
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=4.6e-05 Score=78.88 Aligned_cols=99 Identities=25% Similarity=0.228 Sum_probs=71.1
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d 295 (615)
...+||+|||.|-.+..-. .+-+.+.|++...+..++..|.. ...++|+..+|+.+.+||.+++.. ++||+..
T Consensus 46 gsv~~d~gCGngky~~~~p-----~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsia-vihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNP-----LCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIA-VIHHLST 118 (293)
T ss_pred cceeeecccCCcccCcCCC-----cceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhh-hhhhhhh
Confidence 4569999999995432211 11233345555555666555543 567789999999999999999776 6888764
Q ss_pred h---HHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 296 D---GILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 296 ~---~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
. ..+++|+.|+|||||...+......
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 4 4599999999999999888775543
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00031 Score=73.17 Aligned_cols=110 Identities=22% Similarity=0.328 Sum_probs=76.3
Q ss_pred ccCCCCCCCeEEEECCCCchHHHHHhcC------CCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCC---CCCC
Q 007165 209 KLNNGGNIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRL---PYPS 277 (615)
Q Consensus 209 ~L~~~~~~~~VLDIGCGtG~~a~~L~~~------~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~L---pfpd 277 (615)
.+...+.+-+||||.||.|......... .|.-.|+++..+...+ +.++++|+. +.|..+|+.+. .--+
T Consensus 129 ~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~ 207 (311)
T PF12147_consen 129 RLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALD 207 (311)
T ss_pred HHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccC
Confidence 3334456789999999999766555432 3444566665554444 556677775 37888885432 2123
Q ss_pred CCceEEEecccccccccch---HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 278 RSFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~---~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
-..++++.+. +++.++|- ...+..+.+++.|||+++.+.-+.
T Consensus 208 p~P~l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw 252 (311)
T PF12147_consen 208 PAPTLAIVSG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW 252 (311)
T ss_pred CCCCEEEEec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 4579999888 68888875 457899999999999999988543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00055 Score=65.98 Aligned_cols=102 Identities=16% Similarity=0.051 Sum_probs=78.5
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC-----CCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp-----fpd~sFDlV~~s~~~l 290 (615)
+.-|||+|.|||-++..++.+.+.--++...+.+......-.++-..+.+..+|+..+. +.+..||.|+|.--.+
T Consensus 49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll 128 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLL 128 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccccc
Confidence 35699999999999999998876666777777787777776777666778888876654 5678899999865444
Q ss_pred ccccch-HHHHHHHHhccCCCeEEEEEc
Q 007165 291 DWLQRD-GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 291 ~~~~d~-~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.+.... -++|+++...|++||.++--.
T Consensus 129 ~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 129 NFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 443333 358999999999999999754
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00015 Score=71.91 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=84.1
Q ss_pred ecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc
Q 007165 180 NFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER 259 (615)
Q Consensus 180 ~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er 259 (615)
-|-|-|.+|--..+++. +++.+.. -.++....++||+|+|.|..+..++.. --.+-..++|..|+...++.
T Consensus 83 G~lgrGsMFifSe~QF~----klL~i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 83 GFLGRGSMFIFSEEQFR----KLLVIGG--PAWGQEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred cccccCceEEecHHHHH----HHHhcCC--CccCCCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhc
Confidence 34455666655655554 4444332 134556689999999999999988764 11233446777787777777
Q ss_pred CCCcEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCC-CeEEEEEc
Q 007165 260 GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRP-GGYFVYSS 317 (615)
Q Consensus 260 g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkP-GG~Lvis~ 317 (615)
+.++.- ..+..-.+-+||+|.|.+ ++.-..++.++|+.++.+|+| +|..+++-
T Consensus 154 ~ynVl~----~~ew~~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 154 NYNVLT----EIEWLQTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred CCceee----ehhhhhcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 654322 222222234699999998 688888899999999999999 89888754
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00037 Score=72.50 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=47.4
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcC--CCcEEEEecCCCCCCCCCCceEEEec
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
..+|||||||+|.++..|+++ +|+++|+ ++.+++.++++. .++.+..+|+..+++++-.+|.|+++
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~~v~avE~-----d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAAKVTAVEI-----DRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCCcEEEEEC-----CHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 468999999999999999875 4555554 555555555432 46888999988888764335777754
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.001 Score=66.23 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=63.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHc---------------CCCcEEEEecCCCCCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER---------------GIPSTLGVLGTKRLPYPSR 278 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~er---------------g~~~~~~v~d~~~Lpfpd~ 278 (615)
++.+.||+|.|+|.++..++.- .-.+.+..+++..+..++.+.+. -.+..+.++|....--+..
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence 3456999999999887765511 11223334445555555554432 1235677888777766778
Q ss_pred CceEEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 279 sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.||.|||... .....+++...|+|||.+++-.
T Consensus 162 ~YDaIhvGAa-------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 162 PYDAIHVGAA-------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CcceEEEccC-------ccccHHHHHHhhccCCeEEEee
Confidence 9999998753 2336677888999999999854
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00027 Score=78.64 Aligned_cols=95 Identities=22% Similarity=0.292 Sum_probs=58.5
Q ss_pred CCeEEEECCCCchHHHHHhc--------CCCccccCChhchhHHHHHHHHHcC--CCcEEEEecCCCCCCCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~--------~~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v~d~~~Lpfpd~sFDlV~~ 285 (615)
...|||||||+|.++...++ .+|.+++-++......+ +.++..+ -.+.+..+|++.+..| ..+|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 46899999999987654432 25666665543332211 2223333 4688999999998876 48999996
Q ss_pred cccccccccc---hHHHHHHHHhccCCCeEEE
Q 007165 286 SRCRIDWLQR---DGILLLELDRLLRPGGYFV 314 (615)
Q Consensus 286 s~~~l~~~~d---~~~~L~ei~RvLkPGG~Lv 314 (615)
-. +..+.+ ..+.|....|.|||||.++
T Consensus 265 El--LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 EL--LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ec--cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 33 222221 2357888899999999887
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00079 Score=73.31 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=62.5
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC-CCCCCceEEEeccccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp-fpd~sFDlV~~s~~~l~~ 292 (615)
.+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..++ ++.+..+|+.... -..++||+|++.-- .
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP---r 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP---R 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC---C
Confidence 57999999999999988854 5677776665554333 33333454 5788888875432 11246999986531 1
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
..-...++..+. .++|++.++++..
T Consensus 311 ~G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 311 RGIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred CCCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 111234555554 4799999999863
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00043 Score=71.44 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=47.5
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
..+|||||||+|.++..+++. .++++| +++.+++.++++ ..++.+..+|+..++++ .||.|+++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~~v~~vE-----id~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~Nl 99 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAKKVYAIE-----LDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNL 99 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCCEEEEEE-----CCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcC
Confidence 468999999999999999875 455554 455555555543 23578888998888765 489998754
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0019 Score=66.79 Aligned_cols=98 Identities=21% Similarity=0.309 Sum_probs=60.2
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc----CCCcEEEEe------c-CCCCCCCCCCc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVL------G-TKRLPYPSRSF 280 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~------d-~~~Lpfpd~sF 280 (615)
...+||+|||+|..+..++.. .++++| .+++++..|.++ ++...+.+. | ....+..++.+
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD-----~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~ 223 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAID-----VSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKI 223 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEe-----ccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCce
Confidence 347999999999888887743 455664 555555555443 333222222 2 23344567999
Q ss_pred eEEEeccccccc-------------------------ccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 281 ELAHCSRCRIDW-------------------------LQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 281 DlV~~s~~~l~~-------------------------~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
|+++|+---+.. ......++.-+.|.|+|||.+.+..-
T Consensus 224 dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 224 DLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred eEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 999985211110 00112366778899999999999764
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.30 E-value=7.7e-05 Score=63.03 Aligned_cols=89 Identities=24% Similarity=0.309 Sum_probs=57.9
Q ss_pred eeccccchhHHhhhcCC-C--cEEEEeccCCCCCchhHHhhccccc---ccccccccCCCCCCccceecccccccccccC
Q 007165 464 MDMNSNLGGFAAALKDK-D--VWVMNVAPVRMSARLKIIYDRGLIG---TVHDWCESFSTYPRTYDLLHAWKVFSEIEER 537 (615)
Q Consensus 464 mdm~a~~ggfaaal~~~-~--vwvmnvvp~~~~~tL~~iy~RGliG---~~hdwce~fstYprtyDl~Ha~~~fs~~~~~ 537 (615)
+|+.+|.|-+++.|.+. . |+.+..-+ ..+...-++.--. ..+.=-+.++--+.+||++++.++|..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH----HHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---
Confidence 68999999999999877 3 33333222 2333333332211 2222233343335999999999999965
Q ss_pred CCChhhhhhhhcccccCCcEEEE
Q 007165 538 GCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 538 ~c~~~~i~~EmdRilRp~g~~ii 560 (615)
-+...++-||-|+|||||+++|
T Consensus 74 -~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 -EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -SHHHHHHHHHHHHEEEEEEEEE
T ss_pred -cCHHHHHHHHHHHcCcCeEEeC
Confidence 3589999999999999999987
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00037 Score=70.36 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=78.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc----C---CCcEEEEecCCCC--CCCCCCceE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----G---IPSTLGVLGTKRL--PYPSRSFEL 282 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er----g---~~~~~~v~d~~~L--pfpd~sFDl 282 (615)
.+.+|||.+.|-|.++...+++ .|..++.. ++.++.|.-+ + ..+.+..+|+.++ .|+|.+||+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkd-----p~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDa 208 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKD-----PNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDA 208 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeC-----CCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccce
Confidence 4578999999999999888765 34444333 3333444322 1 1356777775443 378999999
Q ss_pred EEecccccccccch--HHHHHHHHhccCCCeEEEEEcCCC--CCCChhHHHHHHHHHHHHhhcceEEEEe
Q 007165 283 AHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEA--YAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (615)
Q Consensus 283 V~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~~--~~~~~e~~~~w~~l~~La~~l~W~l~~~ 348 (615)
|+----.+...... +++..|++|+|||||.++--+.++ ..+. ......+.+.+++..|.++.+
T Consensus 209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG---~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRG---LDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccccc---CChhHHHHHHHHhcCceeeee
Confidence 97532222222222 568999999999999999765333 1111 123455566677777775543
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00045 Score=67.91 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=49.6
Q ss_pred CCCeEEEECCCCchHHH--HHhc-CCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGA--YLLS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~--~L~~-~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
.+++|+|+|||||.++. .+++ ..|+++|+.+..+..+ .+.+.+.+..+.+.++|+.+.. ..||.|+++-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~-r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNP 116 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIA-RANAEELLGDVEFVVADVSDFR---GKFDTVIMNP 116 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHH-HHHHHhhCCceEEEEcchhhcC---CccceEEECC
Confidence 45789999999996654 4444 4789998877655333 3455555667999999988776 6689888753
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0024 Score=68.67 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=65.8
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCC-CCCCCCCceEEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~-Lpfpd~sFDlV~ 284 (615)
.+++||.||+|.|..++.+++.. ....+...|+++..++.|++. ..++.+...|+.. +.-..++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45789999999999999887642 112233345666677777654 2356777777543 233457899999
Q ss_pred ecccccccc---c---chHHHHH-HHHhccCCCeEEEEEc
Q 007165 285 CSRCRIDWL---Q---RDGILLL-ELDRLLRPGGYFVYSS 317 (615)
Q Consensus 285 ~s~~~l~~~---~---d~~~~L~-ei~RvLkPGG~Lvis~ 317 (615)
+-. .-... + -...+++ .+.+.|+|||.+++..
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 652 11110 0 0235777 8999999999998864
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00068 Score=69.81 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=62.0
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCC-CCC------CCCCce
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPY------PSRSFE 281 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~-Lpf------pd~sFD 281 (615)
.++||+||+++|..+.+++.. ++++++..+.....+. +...+.|+ .+.+..+++.+ ++- .+++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar-~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL-PVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 478999999999988888743 5666666543332222 22223343 46777777433 221 136899
Q ss_pred EEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 282 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 282 lV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+|+.-. .-.....++..+.++|+|||.+++..
T Consensus 159 ~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 159 FIFVDA----DKDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEEecC----CHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 999543 12333567888889999999988743
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0024 Score=65.60 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=45.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCCCce---EEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFE---LAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~sFD---lV~~s 286 (615)
+..+|||||||+|.++..|+++ .++++|+ ++.+++.++++ ..++.+..+|+..++++ .|| +|+++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~-----d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKKVTAIEI-----DPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCcEEEEEC-----CHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 3478999999999999999865 4555544 45555555443 24578888898888865 466 66643
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0039 Score=64.77 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=65.9
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCCCCCCCCCceEEE
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRLPYPSRSFELAH 284 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~Lpfpd~sFDlV~ 284 (615)
+.+++||=||.|.|..++.+++.. . .+.-.|+++..++.+++. .+++.+... .. .-..++||+|+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-T--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-C--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEE
Confidence 456899999999999999999763 1 333345666777777763 223333321 11 11236899999
Q ss_pred ecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCC
Q 007165 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA 322 (615)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~ 322 (615)
+-. . ....+.+.+.|.|+|||.++......+.
T Consensus 145 vDs-~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 145 CLQ-E-----PDIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred EcC-C-----CChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 543 1 3456889999999999999997755543
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0014 Score=69.21 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=46.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc-CCCcEEEEecCCCCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er-g~~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
+..+|||||||+|.++..+++. .|+++|+++..+......++... ..++.+..+|+...+++ .||.|+++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaN 108 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVAN 108 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEec
Confidence 3468999999999999999864 56666665544433332222111 23578888888766653 68988854
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0055 Score=64.37 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=69.9
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC---------CCcEEEEecCCCC-CCCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---------IPSTLGVLGTKRL-PYPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg---------~~~~~~v~d~~~L-pfpd~sFDlV~~ 285 (615)
+++||-||-|.|..++.+++..- .-.+.-.++.++.++.+++.- .++.+...|...+ .-...+||+|++
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 37999999999999999987521 112233356677778887752 2345666664332 212248999996
Q ss_pred cccccccc-c----chHHHHHHHHhccCCCeEEEEEcCCCCCCC
Q 007165 286 SRCRIDWL-Q----RDGILLLELDRLLRPGGYFVYSSPEAYAHD 324 (615)
Q Consensus 286 s~~~l~~~-~----d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~ 324 (615)
-. ..-. + ....+++.++|.|+++|.++...-..|...
T Consensus 156 D~--tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 156 DS--TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred cC--CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 43 1111 1 125699999999999999999865555444
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0031 Score=59.08 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=59.6
Q ss_pred CCeEEEECCCCch-HHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCC-CCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVAS-FGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~-~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfp-d~sFDlV~~s~~~l~~~ 293 (615)
..++||||||+|. ++..|.+. |.++.+.|+++..++.+++.+. .+.+.|..+-.+. -+.+|+|.+.+. .
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirp----p 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRP----P 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCC----C
Confidence 4789999999995 88888864 4455555666677788877764 5666776554432 367999997774 3
Q ss_pred cchHHHHHHHHhccCCCeEEEEE
Q 007165 294 QRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
++....+.++.+-+ |.-+++.
T Consensus 88 ~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 88 RDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred HHHHHHHHHHHHHc--CCCEEEE
Confidence 44455666666655 3445554
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0073 Score=59.57 Aligned_cols=93 Identities=22% Similarity=0.243 Sum_probs=60.7
Q ss_pred eEEEECCCCchHHHHHh----cCCCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 218 NVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~----~~~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+++|||+|.|.=+..|+ +.+++-+|-...-.+ -..+.+++.+++ +.+....++. +....+||+|++-. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA--v-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA--V-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES--S--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh--h--
Confidence 79999999996665554 334555554443221 122334455765 7777777777 44568999999543 3
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEc
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.....++.-+...|++||.+++.-
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 345678888999999999998754
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0013 Score=65.59 Aligned_cols=127 Identities=15% Similarity=0.098 Sum_probs=76.1
Q ss_pred cchhcCCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhc--C--CCccccCChh
Q 007165 171 WMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--H--DIIAMSLAPN 246 (615)
Q Consensus 171 Wv~~~g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~--~--~V~gvdis~~ 246 (615)
...+.|-.|.++-....|..+...-...+.+++ .+..+|||+-||.|.|+..++. . .|.++|+.|.
T Consensus 67 ~~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v----------~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~ 136 (200)
T PF02475_consen 67 IHKENGIRFKVDLSKVYFSPRLSTERRRIANLV----------KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPD 136 (200)
T ss_dssp EEEETTEEEEEETTTS---GGGHHHHHHHHTC------------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HH
T ss_pred EEEeCCEEEEEccceEEEccccHHHHHHHHhcC----------CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHH
Confidence 345666677776667777776554444444332 2347899999999999999886 2 5888888876
Q ss_pred chhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEE
Q 007165 247 DVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 314 (615)
Q Consensus 247 Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lv 314 (615)
-.. .+.+.++..++. +....+|...+.- .+.||-|++.. ......+|..+.+++++||.+-
T Consensus 137 a~~-~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 137 AVE-YLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHH-HHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HHH-HHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 543 333444444544 5667888777654 78999999654 2223358888999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0027 Score=71.21 Aligned_cols=103 Identities=20% Similarity=0.270 Sum_probs=63.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCC-CCCCCceEEE---
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP-YPSRSFELAH--- 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lp-fpd~sFDlV~--- 284 (615)
++.+|||++||.|.=+.++++. .+++.|++..-+... .+.+...|+. +.+...|...+. ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L-~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVL-HANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHH-HHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 4578999999999877777643 455555544333221 1223333654 456666766543 2236799999
Q ss_pred -ecccc-cc--------cccc--------hHHHHHHHHhccCCCeEEEEEcC
Q 007165 285 -CSRCR-ID--------WLQR--------DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 285 -~s~~~-l~--------~~~d--------~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
||... +. |.++ ..++|..+.++|||||+++.++=
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 55321 11 1111 14588999999999999998873
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0047 Score=61.00 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcC-CCcEEEEeccCCCC-CchhH----Hhhccc--ccccc
Q 007165 438 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLKI----IYDRGL--IGTVH 509 (615)
Q Consensus 438 ~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~-~~vwvmnvvp~~~~-~tL~~----iy~RGl--iG~~h 509 (615)
+.|++++-.-..+. ..+.. =..|+|+.+|.|.++.++.. .|- ..|+-++.. .-+.. +-+.|+ |=+++
T Consensus 27 ~~~~~~~~d~l~l~-~~l~~--g~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLAIA-PYLPG--GERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred HHHHHHHHHHHHHH-hhcCC--CCeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEe
Confidence 48888884322122 22333 24699999999998887753 232 256666543 22222 222333 44555
Q ss_pred cccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCccceeeccccc
Q 007165 510 DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPR 589 (615)
Q Consensus 510 dwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~~~~~~~~~ 589 (615)
.-.+.+.. ..+||+|-++.. .++.+++-++-|+|||||.+++-+......++..+++.+.|......+. |
T Consensus 102 ~d~~~~~~-~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 171 (187)
T PRK00107 102 GRAEEFGQ-EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIEL-T 171 (187)
T ss_pred ccHhhCCC-CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEE-e
Confidence 55566655 679999998652 3478899999999999999999999999999999999999996432222 2
Q ss_pred cCcCCCCCceEEEEEec
Q 007165 590 IDALSSSEERVLIAKKK 606 (615)
Q Consensus 590 ~~~~~~~~e~~l~~~k~ 606 (615)
-.. -.++..+.|.+|+
T Consensus 172 ~~~-~~~~~~~~~~~~~ 187 (187)
T PRK00107 172 LPG-LDGERHLVIIRKK 187 (187)
T ss_pred cCC-CCCcEEEEEEecC
Confidence 111 2345567777774
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.012 Score=58.16 Aligned_cols=100 Identities=13% Similarity=-0.072 Sum_probs=58.4
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCC-CC-C-CCC-CceEEEec
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-Y-PSR-SFELAHCS 286 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~-Lp-f-pd~-sFDlV~~s 286 (615)
..+|||++||+|.++..++.+ .|+++|.+...+.... +.+...+. ++.+...|+.. +. + ... .||+|+.-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 367999999999999999865 4666666554433222 22222343 35777778633 22 1 122 47888753
Q ss_pred ccccccccchHHHHHHH--HhccCCCeEEEEEcC
Q 007165 287 RCRIDWLQRDGILLLEL--DRLLRPGGYFVYSSP 318 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei--~RvLkPGG~Lvis~P 318 (615)
- -+.. .....++..+ ..+|+++|.+++..+
T Consensus 129 P-Py~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 P-PFFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred c-CCCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 2 1111 1123344433 347999999998654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00028 Score=65.86 Aligned_cols=96 Identities=24% Similarity=0.417 Sum_probs=67.5
Q ss_pred CceeeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhhcccccccccccccCCCCCCccceeccccccccccc
Q 007165 458 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 536 (615)
Q Consensus 458 ~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~ 536 (615)
..-.+|||..+|.|.|+..|.+.+. .|+-++.. ..+.. +-....-++=.++. --+.+||+|.+.++|..+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDPP-FPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECHTHH-CHSSSEEEEEEESSGGGSS-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhhh-ccccchhhHhhHHHHhhcc-
Confidence 4455899999999999999987766 44444432 33333 22222222111211 1357999999999999655
Q ss_pred CCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 537 RGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 537 ~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
+...+|-+|=|+|+|||+++|.+..
T Consensus 93 ---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4899999999999999999999765
|
... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0022 Score=70.13 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=63.4
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
.+|||++||+|.++..++.. .|+++|+++..+..+. +.++..++. ..+...|+..+....+.||+|++-- .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~-~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP--~- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK-KNLELNGLENEKVFNKDANALLHEERKFDVVDIDP--F- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC--C-
Confidence 57999999999999998642 4666666554443332 222223443 4567777654322146799998532 1
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
..+..++..+.+.+++||.++++..+
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 33456888878889999999998643
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0027 Score=70.34 Aligned_cols=98 Identities=22% Similarity=0.394 Sum_probs=72.7
Q ss_pred eEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 218 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
++|-+|||.-.+...+.+. .|+.+|+++..+...+...+ .......+...|...+.|++.+||+|+--. .++.+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkG-tlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKG-TLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecC-cccccc
Confidence 7999999999988888754 67777777766654444333 223456788899999999999999999876 355432
Q ss_pred -ch---------HHHHHHHHhccCCCeEEEEEc
Q 007165 295 -RD---------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 295 -d~---------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+. ...+.++.|+|+|||+++..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 21 236789999999999977644
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0071 Score=59.18 Aligned_cols=101 Identities=22% Similarity=0.249 Sum_probs=61.0
Q ss_pred CCCeEEEECCCCchHHHHHh--cCCCc-----------cccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLL--SHDII-----------AMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRS 279 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~--~~~V~-----------gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~s 279 (615)
+...|||--||+|++....+ ...+. |.|+++..+..+. +.+...+. .+.+.+.|+..+++.+++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~-~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAR-ENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHH-HHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHH-HHHHhcccCCceEEEecchhhcccccCC
Confidence 34679999999998875543 33334 6666666554443 22333344 367888899999988899
Q ss_pred ceEEEeccccccc-cc---ch----HHHHHHHHhccCCCeEEEEEc
Q 007165 280 FELAHCSRCRIDW-LQ---RD----GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 280 FDlV~~s~~~l~~-~~---d~----~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+|.|++.-- ..- .. +. ..++.++.++|++...++++.
T Consensus 107 ~d~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 107 VDAIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp SCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred CCEEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 999997521 110 11 11 347899999999955555543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.014 Score=59.09 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHh-----cCCCccccCChhchhHHHHHHHHHcCC--CcE
Q 007165 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL-----SHDIIAMSLAPNDVHENQIQFALERGI--PST 264 (615)
Q Consensus 192 a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~-----~~~V~gvdis~~Dls~a~i~~A~erg~--~~~ 264 (615)
..++.+.+.+++. ++++||||.=||..+..++ +.+|+++|+........ .++.+..|. .+.
T Consensus 61 ~g~fl~~li~~~~-----------ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~ 128 (237)
T KOG1663|consen 61 KGQFLQMLIRLLN-----------AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKIT 128 (237)
T ss_pred HHHHHHHHHHHhC-----------CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceee
Confidence 3455666655554 4789999977775554444 23788888766554433 244444454 356
Q ss_pred EEEecCC-CCC-----CCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 265 LGVLGTK-RLP-----YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 265 ~~v~d~~-~Lp-----fpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+.++.+. .++ .+.++||+|+ +=+|-.+....+.++.++||+||.+++.-
T Consensus 129 ~i~g~a~esLd~l~~~~~~~tfDfaF----vDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 129 FIEGPALESLDELLADGESGTFDFAF----VDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred eeecchhhhHHHHHhcCCCCceeEEE----EccchHHHHHHHHHHHhhcccccEEEEec
Confidence 6666532 221 3568999998 33444555678999999999999999843
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.013 Score=62.71 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=61.6
Q ss_pred CeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc-----CCCcEE--EEecCCC----CCC--CCCCc
Q 007165 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-----GIPSTL--GVLGTKR----LPY--PSRSF 280 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er-----g~~~~~--~v~d~~~----Lpf--pd~sF 280 (615)
..++|+|||.|.=+..|+++ .-..+.+.+.|+|...++.+.++ -..+.+ ..+|..+ ++- .....
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 47999999999766655532 11123345555555555554433 122333 4555322 221 12346
Q ss_pred eEEEecccccccccchH--HHHHHHHh-ccCCCeEEEEEc
Q 007165 281 ELAHCSRCRIDWLQRDG--ILLLELDR-LLRPGGYFVYSS 317 (615)
Q Consensus 281 DlV~~s~~~l~~~~d~~--~~L~ei~R-vLkPGG~Lvis~ 317 (615)
.+++...+.+..++..+ .+|+++++ .|+|||.|++..
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 77776665677665553 58999999 999999999865
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0055 Score=63.03 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=65.8
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCCC-CCCCC-CceEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-PYPSR-SFELA 283 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~L-pfpd~-sFDlV 283 (615)
++++||=||-|.|..++.+.+.. ....++..++++..++.|++. ..++.+...|.... .-..+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 46899999999999999998652 011233335556666666543 24677888885332 11223 89999
Q ss_pred Eecccccccccc----hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 284 HCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 284 ~~s~~~l~~~~d----~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.-.. -...+. ...+++.+.+.|+|||.+++.....
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 155 IVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 96431 111111 2579999999999999999976444
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0033 Score=60.98 Aligned_cols=92 Identities=25% Similarity=0.310 Sum_probs=51.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEec---------CCC-CCCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG---------TKR-LPYPSRS 279 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d---------~~~-Lpfpd~s 279 (615)
...+|||+||++|.|+..+.++ .|+++|+.+.+.. ..+....+| ... ++-..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhHHHhhhhhccccccC
Confidence 4588999999999999999865 4677877765211 011111111 111 1111268
Q ss_pred ceEEEeccccccccc----ch-------HHHHHHHHhccCCCeEEEEEcC
Q 007165 280 FELAHCSRCRIDWLQ----RD-------GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 280 FDlV~~s~~~l~~~~----d~-------~~~L~ei~RvLkPGG~Lvis~P 318 (615)
||+|+|-. +..... +. ...+.-+...|+|||.+++-.-
T Consensus 92 ~dlv~~D~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 92 FDLVLSDM-APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp ESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred cceecccc-ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 99999754 122211 11 2244555678999999988663
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0084 Score=64.06 Aligned_cols=94 Identities=17% Similarity=0.100 Sum_probs=63.6
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEec-CCCCCCCCCCceEEEeccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d-~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
....+|+|.|.|..+..+... +|-++++....+- +.|......+...-+| .++.|- -|+|++-.+ +|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~----~~a~~~~~gV~~v~gdmfq~~P~----~daI~mkWi-Lhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVL----AAAPYLAPGVEHVAGDMFQDTPK----GDAIWMKWI-LHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHH----hhhhhhcCCcceecccccccCCC----cCeEEEEee-ccc
Confidence 578999999999999998863 3445555433332 2222222335555566 344442 359999996 555
Q ss_pred ccch--HHHHHHHHhccCCCeEEEEEcC
Q 007165 293 LQRD--GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 293 ~~d~--~~~L~ei~RvLkPGG~Lvis~P 318 (615)
..|. .++|+++...|+|||.+++...
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 5444 5799999999999999999774
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0014 Score=62.95 Aligned_cols=135 Identities=16% Similarity=0.283 Sum_probs=81.0
Q ss_pred CCeEEEECCCCchHHHHHhcCCCcccc---CChhchhHHHHHHHHHcCCCcEE-----EEec--CCCCCCCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMS---LAPNDVHENQIQFALERGIPSTL-----GVLG--TKRLPYPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvd---is~~Dls~a~i~~A~erg~~~~~-----~v~d--~~~Lpfpd~sFDlV~~ 285 (615)
+++||++|.|.-.++..|....+...+ ..+.+.+...++....++--..+ ...+ ..+......+||.|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 478999999976666665533222111 13344444444444433310001 0011 1112234468999999
Q ss_pred cccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEeeC-ceEEEecc
Q 007165 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD-QTVIWAKP 358 (615)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~~-~~aiwqKP 358 (615)
+.|+ -+-+.-..++..+.++|+|.|.-++..|-. . +..+++.+.+....+.+....+ +.+|||+-
T Consensus 110 ADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPRR---g----~sL~kF~de~~~~gf~v~l~enyde~iwqrh 175 (201)
T KOG3201|consen 110 ADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPRR---G----QSLQKFLDEVGTVGFTVCLEENYDEAIWQRH 175 (201)
T ss_pred ccch-hHHHHHHHHHHHHHHHhCcccceeEecCcc---c----chHHHHHHHHHhceeEEEecccHhHHHHHHH
Confidence 9984 344445678999999999999988887743 1 1245566777777787776665 56788764
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0027 Score=63.37 Aligned_cols=113 Identities=18% Similarity=0.295 Sum_probs=71.7
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCC-CCCchhHHh----hcccc---cccc-cccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLKIIY----DRGLI---GTVH-DWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~-~~~tL~~iy----~RGli---G~~h-dwce~fstYprtyDl~Ha~~~ 530 (615)
+.|+|..+|.|+++..+... +- -+|+-++ +++.+...- +.|+- -+.+ |..+. .+|.+||+|++.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPH--LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCCEeehHHH
Confidence 36999999999998888643 21 1333333 234443332 34552 2222 22121 34789999999988
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEcChh----------------HHHHHHHHHhhcCccc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------------IINYIRKFITALKWDG 581 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~----------------~~~~~~~~~~~~~w~~ 581 (615)
|..+. +...++-++.|+|+|||++++.|-.. ...++.+++..-.++.
T Consensus 77 l~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~ 139 (224)
T smart00828 77 IHHIK----DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRV 139 (224)
T ss_pred HHhCC----CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeE
Confidence 87543 36889999999999999999976421 1345556666666654
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0046 Score=63.98 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=36.0
Q ss_pred EEEecCCCC-CCCC-----CCceEEEecccccccc-cch---HHHHHHHHhccCCCeEEEEEc
Q 007165 265 LGVLGTKRL-PYPS-----RSFELAHCSRCRIDWL-QRD---GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 265 ~~v~d~~~L-pfpd-----~sFDlV~~s~~~l~~~-~d~---~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+...|.... |+.. .+||+|++++| ++.. ++. ..+++++.++|||||+|++..
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fc-LE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFC-LESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESS-HHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHH-HHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 455665443 3332 35999999997 5543 344 458999999999999999875
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.027 Score=58.85 Aligned_cols=121 Identities=20% Similarity=0.080 Sum_probs=62.4
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---CCCcEE--EEec--CCCCCCCCCCceEEEec
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---GIPSTL--GVLG--TKRLPYPSRSFELAHCS 286 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---g~~~~~--~v~d--~~~Lpfpd~sFDlV~~s 286 (615)
-.+++|||+|||+|...-...+.--...++...|.++.+.++++.. ...... .... ....++. ..|+|+++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 3457899999999965544433200122333445566666655432 111110 0011 1122332 33999999
Q ss_pred ccccccccch--HHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcce
Q 007165 287 RCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 343 (615)
Q Consensus 287 ~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W 343 (615)
+. |.-+++. ..+++.+.+.+.+ +|+|..|.. ....+....+++.+....+
T Consensus 110 ~~-L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt----~~Gf~~i~~aR~~l~~~~~ 161 (274)
T PF09243_consen 110 YV-LNELPSAARAELVRSLWNKTAP--VLVLVEPGT----PAGFRRIAEARDQLLEKGA 161 (274)
T ss_pred hh-hhcCCchHHHHHHHHHHHhccC--cEEEEcCCC----hHHHHHHHHHHHHHhhCCC
Confidence 95 5555552 2356666666655 999988765 2233333444444433333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0072 Score=65.42 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=56.6
Q ss_pred eEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC--------C---C-----CC
Q 007165 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--------Y---P-----SR 278 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp--------f---p-----d~ 278 (615)
+|||++||+|.++..|+.. .|+++|+++..+..+. +.+...++ ++.+..+|+.++- + . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 5999999999999988864 5777776666554443 33333455 5778888865421 1 0 12
Q ss_pred CceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 279 sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.||+|+.--- -..-...++..+ ++|++.++++..
T Consensus 279 ~~d~v~lDPP---R~G~~~~~l~~l---~~~~~ivYvsC~ 312 (353)
T TIGR02143 279 NCSTIFVDPP---RAGLDPDTCKLV---QAYERILYISCN 312 (353)
T ss_pred CCCEEEECCC---CCCCcHHHHHHH---HcCCcEEEEEcC
Confidence 3798874320 001112344444 348899998763
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.047 Score=54.73 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=61.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--------CCCCCce
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--------fpd~sFD 281 (615)
++.+|+|+|+-.|+++..+++. .|+++|+.+.++.+ .+.+.++|...-+ +....+|
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~-----------~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP-----------GVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC-----------CceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 3578999999999999988754 37888888876532 2566777754432 3345579
Q ss_pred EEEeccc---ccccccch-------HHHHHHHHhccCCCeEEEEEc
Q 007165 282 LAHCSRC---RIDWLQRD-------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 282 lV~~s~~---~l~~~~d~-------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+|++-.+ .-++..|. ..++.-+..+|+|||.|++-.
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 9985321 11111111 235566678999999999865
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.04 Score=59.24 Aligned_cols=93 Identities=11% Similarity=0.096 Sum_probs=62.3
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
.++.++|||||++|.|+..|.++ .|+++|..+.+. . ......+.....|..+...+.+.+|.++|-.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~------~-L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDm---- 278 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ------S-LMDTGQVEHLRADGFKFRPPRKNVDWLVCDM---- 278 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH------h-hhCCCCEEEEeccCcccCCCCCCCCEEEEec----
Confidence 35678999999999999999976 466666443221 1 1223456777766544432367899999754
Q ss_pred cccchHHHHHHHHhccCCC--eEEEEEcC
Q 007165 292 WLQRDGILLLELDRLLRPG--GYFVYSSP 318 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPG--G~Lvis~P 318 (615)
...|.+++.-+.+.|..| ..+|+...
T Consensus 279 -ve~P~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 279 -VEKPARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred -ccCHHHHHHHHHHHHhcCcccEEEEEEE
Confidence 245677777788888766 46666553
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0098 Score=60.66 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=64.5
Q ss_pred ccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhccc-ccccccccccCCCCCCccceeccccccc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGl-iG~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
+......+|+|+.+|-|.++..|..... .|+=+|- ++-|...-+++- +...+.-.|.++-...+||+|-++..+.
T Consensus 38 l~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~ 114 (251)
T PRK10258 38 LPQRKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQ 114 (251)
T ss_pred cCccCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhh
Confidence 3444567899999999999988865421 3333332 344444444431 1222222344444457899998776554
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
. . -+...++-||-|+|+|||.+++..
T Consensus 115 ~-~---~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 115 W-C---GNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred h-c---CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 1 1 257899999999999999999874
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0095 Score=64.69 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=58.3
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCC-C-CC--------------C
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-YP--------------S 277 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~L-p-fp--------------d 277 (615)
.+|||++||+|.++..|+.. .|+++|+++..+..+. +.+...++ ++.+..+|+... + +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 46999999999999988854 6777777666554443 33333455 577888886542 1 10 1
Q ss_pred CCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
..||+|+.--- ...-...++..+. +|++.++++..
T Consensus 287 ~~~D~v~lDPP---R~G~~~~~l~~l~---~~~~ivyvSC~ 321 (362)
T PRK05031 287 YNFSTIFVDPP---RAGLDDETLKLVQ---AYERILYISCN 321 (362)
T ss_pred CCCCEEEECCC---CCCCcHHHHHHHH---ccCCEEEEEeC
Confidence 25899985321 1111133444444 37888888763
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.01 Score=62.63 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhc-----------CCCccccCChhchhHHHHHHHHHcCC
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------HDIIAMSLAPNDVHENQIQFALERGI 261 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~-----------~~V~gvdis~~Dls~a~i~~A~erg~ 261 (615)
....+.+.+++.. ....+|||-+||+|.|...+.. ..+.|.|+.+....-+.+.... ++.
T Consensus 32 ~~i~~l~~~~~~~--------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~ 102 (311)
T PF02384_consen 32 REIVDLMVKLLNP--------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGI 102 (311)
T ss_dssp HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTH
T ss_pred HHHHHHHHhhhhc--------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcc
Confidence 3455566666642 2346799999999998777654 2455555544433333322222 232
Q ss_pred C---cEEEEecCCCCCCC--CCCceEEEeccc--ccccc------------------cchHHHHHHHHhccCCCeEEEEE
Q 007165 262 P---STLGVLGTKRLPYP--SRSFELAHCSRC--RIDWL------------------QRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 262 ~---~~~~v~d~~~Lpfp--d~sFDlV~~s~~--~l~~~------------------~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
. ..+...|....+.. .+.||+|+++-- ...|. .....++..+.+.|++||++++.
T Consensus 103 ~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 103 DNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp HCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 2 23666665444332 478999998521 11010 00124788899999999999998
Q ss_pred cCCC
Q 007165 317 SPEA 320 (615)
Q Consensus 317 ~P~~ 320 (615)
.|..
T Consensus 183 lp~~ 186 (311)
T PF02384_consen 183 LPNG 186 (311)
T ss_dssp EEHH
T ss_pred ecch
Confidence 8764
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.02 Score=63.59 Aligned_cols=96 Identities=22% Similarity=0.292 Sum_probs=68.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCC---CCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP---SRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfp---d~sFDlV~~s~~ 288 (615)
+..++||+=||.|.|+..|+++ +|+|+++++..+..++ +.|+..++ ++.|..++++++... ...||.|+.--
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP- 370 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP- 370 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC-
Confidence 3468999999999999999965 8999999998887666 44444554 588888888776533 35789998421
Q ss_pred ccccccch---HHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQRD---GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d~---~~~L~ei~RvLkPGG~Lvis~P 318 (615)
|.. ..+++.+. -++|-..+++|..
T Consensus 371 -----PR~G~~~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 371 -----PRAGADREVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred -----CCCCCCHHHHHHHH-hcCCCcEEEEeCC
Confidence 111 23444444 4567788888863
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.01 Score=64.97 Aligned_cols=104 Identities=17% Similarity=0.090 Sum_probs=69.0
Q ss_pred CCeEEEECCCCchHHHHHhc--C-CCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCCC-C---CCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRL-P---YPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~--~-~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~L-p---fpd~sFDlV~~ 285 (615)
+++|||+=|=||.|+.+.+. + .|+++|++..-+.-+..++. -.|+ ++.+.++|+..+ . -...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~-LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAE-LNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHH-hcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 57899999999999988774 3 67777666655544442222 2343 367888885332 2 12348999997
Q ss_pred cccc--------cccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 SRCR--------IDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 s~~~--------l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
---. ..-..+...++..+.++|+|||.+++++-..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 3211 1112344568899999999999999987443
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.034 Score=54.58 Aligned_cols=101 Identities=18% Similarity=0.257 Sum_probs=65.8
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccc--
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRC-- 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~-- 288 (615)
...+||||||+|..+..|++. -..+.|+.+... ++..+-|+..+..+..++.|...-- ..++.|+++.+.-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~l-~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSGL-RNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhhh-ccCCccEEEECCCcC
Confidence 467999999999988888754 234667777543 3444666666666677777743221 2278888875421
Q ss_pred ------------ccccc--cc----hHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 ------------RIDWL--QR----DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ------------~l~~~--~d----~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
...|. .+ .++++..+..+|.|.|.|++..-
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 11121 11 23577888899999999998763
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.015 Score=61.66 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=58.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCCCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lpfpd~sFDlV~~ 285 (615)
..+.|||+|||+|.++...+.+ .|.+++.+. |.+.|++. ++ .+.++.+-.++..+| ++.|++++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~------MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE------MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH------HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEe
Confidence 3578999999999777665533 666765432 33444432 23 234444556777666 78999996
Q ss_pred cccccccccchHH---HHHHHHhccCCCeEEEEEc
Q 007165 286 SRCRIDWLQRDGI---LLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 286 s~~~l~~~~d~~~---~L~ei~RvLkPGG~Lvis~ 317 (615)
-- ..++---++ ....++|.|+|.|..+=+.
T Consensus 250 EP--MG~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 250 EP--MGYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred cc--chhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 44 333222222 3345669999999988554
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.072 Score=53.85 Aligned_cols=117 Identities=14% Similarity=0.154 Sum_probs=69.3
Q ss_pred CCeEEEECCCCchHHHHHh----cCCCccccCChhchhHHHHH-HHHHcCCC-cEEEEecCCCCCCCCCC-ceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQ-FALERGIP-STLGVLGTKRLPYPSRS-FELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~----~~~V~gvdis~~Dls~a~i~-~A~erg~~-~~~~v~d~~~Lpfpd~s-FDlV~~s~~ 288 (615)
..+++|||+|.|.=+..|+ +.+++-+|-... ..+.++ .+.+.+++ +.+...-++.+.-. .. ||+|.+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K--k~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-~~~~D~vtsRA- 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK--KIAFLREVKKELGLENVEIVHGRAEEFGQE-KKQYDVVTSRA- 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch--HHHHHHHHHHHhCCCCeEEehhhHhhcccc-cccCcEEEeeh-
Confidence 4789999999997666655 223444433222 112222 23455776 88888778877632 23 99998543
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
+ .+...++.-...+||+||.++..- .....+.+...+.......+.+.
T Consensus 144 -v---a~L~~l~e~~~pllk~~g~~~~~k------~~~~~~e~~e~~~a~~~~~~~~~ 191 (215)
T COG0357 144 -V---ASLNVLLELCLPLLKVGGGFLAYK------GLAGKDELPEAEKAILPLGGQVE 191 (215)
T ss_pred -c---cchHHHHHHHHHhcccCCcchhhh------HHhhhhhHHHHHHHHHhhcCcEE
Confidence 2 345667777889999999876422 11122334455555555554443
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.11 Score=56.18 Aligned_cols=97 Identities=23% Similarity=0.256 Sum_probs=58.8
Q ss_pred eeeeccccchhHHhhhcCC-CcEEEEeccCCCC-CchhHH----hhcccccccccccccCCCCCCccceecccccccc-c
Q 007165 462 NVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKII----YDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSE-I 534 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-~tL~~i----y~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~-~ 534 (615)
.|+|+.+|.|.++++|.+. |.- .|+-+|.. .-|... -..|+-+..+ +...++.-+.+||+|-.+--|-. +
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 5999999999999988754 311 12223321 111111 1123333332 33344545789999999877642 1
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
....-..+.++-++-|.|+|||.++|=
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 111123678899999999999999774
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.037 Score=62.94 Aligned_cols=109 Identities=13% Similarity=0.140 Sum_probs=63.2
Q ss_pred CCeEEEECCCCchHHHHHhcCC-------CccccCChhchhHHHHHHHHHc----C-CCcEEEEecCCCC-----CCCCC
Q 007165 216 IRNVLDVGCGVASFGAYLLSHD-------IIAMSLAPNDVHENQIQFALER----G-IPSTLGVLGTKRL-----PYPSR 278 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~-------V~gvdis~~Dls~a~i~~A~er----g-~~~~~~v~d~~~L-----pfpd~ 278 (615)
..+|||.|||+|.|...++... ....++.+.|+++..+..++.. + ....+...|.... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 4689999999999888776420 1124556666666666665543 1 2233333332111 11125
Q ss_pred CceEEEecccc--ccccc------------------------------------------c-hHHHH-HHHHhccCCCeE
Q 007165 279 SFELAHCSRCR--IDWLQ------------------------------------------R-DGILL-LELDRLLRPGGY 312 (615)
Q Consensus 279 sFDlV~~s~~~--l~~~~------------------------------------------d-~~~~L-~ei~RvLkPGG~ 312 (615)
.||+|+++--- ++... + ...++ ..+.++|+|||+
T Consensus 112 ~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~ 191 (524)
T TIGR02987 112 LFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGY 191 (524)
T ss_pred cccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCCE
Confidence 79999985211 11100 0 01134 457899999999
Q ss_pred EEEEcCCCCCCC
Q 007165 313 FVYSSPEAYAHD 324 (615)
Q Consensus 313 Lvis~P~~~~~~ 324 (615)
+.+..|..+...
T Consensus 192 ~~~I~P~s~l~~ 203 (524)
T TIGR02987 192 VSIISPASWLGD 203 (524)
T ss_pred EEEEEChHHhcC
Confidence 999999865543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.025 Score=58.66 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=48.9
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCC-CceEEEec
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSR-SFELAHCS 286 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~-sFDlV~~s 286 (615)
..+|||||+|.|.++..|+++ .|+++++.+ .+++.-+++ ..+..+..+|+...++++- .++.|+++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~-----~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDR-----RLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCH-----HHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 578999999999999999975 677775544 444444433 3467888899988888754 68888854
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.1 Score=55.24 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=53.9
Q ss_pred CCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCCh------h-HH-HHHHHHHHHHhhcceEEEEee
Q 007165 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP------E-NR-RIWNAMYDLLKSMCWKIVSKK 349 (615)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~------e-~~-~~w~~l~~La~~l~W~l~~~~ 349 (615)
++||+|+..+ .+.-..+.-.++..+..+|+|||+++=..|-.|+... + .. -..+.+..+++..+|++..++
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 4699998776 4665566677999999999999999988877655222 1 11 246788899999999988766
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.25 Score=50.61 Aligned_cols=123 Identities=18% Similarity=0.286 Sum_probs=81.1
Q ss_pred CCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcE-EEEecCCCCC---CCCCCceEEEec
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLP---YPSRSFELAHCS 286 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~-~~v~d~~~Lp---fpd~sFDlV~~s 286 (615)
.+.+.+||||+.||.|+..++++ .|.++|+.-..++... .....+. +...++..+. +. +..|+++|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL-----R~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL-----RNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH-----hcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 35688999999999999999865 6888877666655443 2233332 2333343332 22 367899875
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcCCCCC------------CChhH-HHHHHHHHHHHhhcceEEE
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------HDPEN-RRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~------------~~~e~-~~~w~~l~~La~~l~W~l~ 346 (615)
-+ ++ ....+|-.+..+|+|||.++.-.-+.+. ++++. ...-..+.+++....|.+.
T Consensus 152 vS---FI-SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 152 VS---FI-SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred ee---hh-hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 43 22 3566899999999999999887655432 22322 2456777888888888665
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.018 Score=57.74 Aligned_cols=119 Identities=12% Similarity=0.099 Sum_probs=58.9
Q ss_pred ccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHh---cC-CCccccCChhchhHH--HHHHHHH--
Q 007165 187 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL---SH-DIIAMSLAPNDVHEN--QIQFALE-- 258 (615)
Q Consensus 187 ~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~---~~-~V~gvdis~~Dls~a--~i~~A~e-- 258 (615)
.|.+-.......+.+.+.+ .+....+|||||.|......+ +. ...|+++.+.-...+ +.+..++
T Consensus 22 ~YGEi~~~~~~~il~~~~l--------~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~ 93 (205)
T PF08123_consen 22 TYGEISPEFVSKILDELNL--------TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRM 93 (205)
T ss_dssp CGGGCHHHHHHHHHHHTT----------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHH
T ss_pred ceeecCHHHHHHHHHHhCC--------CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHH
Confidence 3444444445555555543 234789999999997654443 22 367887766532222 1111111
Q ss_pred --cCC---CcEEEEecCCCCCCCC---CCceEEEecccccccccchHHHHHHHHhccCCCeEEEE
Q 007165 259 --RGI---PSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 259 --rg~---~~~~~v~d~~~Lpfpd---~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvi 315 (615)
.|. ++.+..+|..+.++.. ..-|+|++++. -+.++....|.++..-||+|-+++-
T Consensus 94 ~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~--~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 94 KHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNT--CFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--T--TT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred HHhhcccccceeeccCccccHhHhhhhcCCCEEEEecc--ccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 122 3455555544332111 34699998873 3446666677888889999988764
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.062 Score=54.12 Aligned_cols=113 Identities=18% Similarity=0.216 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCC----CcEEEEe
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI----PSTLGVL 268 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~----~~~~~v~ 268 (615)
..+-...++.+. .++++||.||-|.|.....+.++...-.-| .+.++...+.-++.|. ++.+..+
T Consensus 88 tpiMha~A~ai~---------tkggrvLnVGFGMgIidT~iQe~~p~~H~I--iE~hp~V~krmr~~gw~ek~nViil~g 156 (271)
T KOG1709|consen 88 TPIMHALAEAIS---------TKGGRVLNVGFGMGIIDTFIQEAPPDEHWI--IEAHPDVLKRMRDWGWREKENVIILEG 156 (271)
T ss_pred hHHHHHHHHHHh---------hCCceEEEeccchHHHHHHHhhcCCcceEE--EecCHHHHHHHHhcccccccceEEEec
Confidence 345555555554 346789999999998888887663221111 1345555555555543 2333332
Q ss_pred cCCC-C-CCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 269 GTKR-L-PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 269 d~~~-L-pfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
--++ + .++|+.||-|+--- .-++-.|...+.+.+.|+|||+|+|-+..
T Consensus 157 ~WeDvl~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 157 RWEDVLNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred chHhhhccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 2111 2 25789999998443 23666788889999999999999998754
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.026 Score=59.49 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=62.6
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCC-CC-C-CCCCceEEEec
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKR-LP-Y-PSRSFELAHCS 286 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~-Lp-f-pd~sFDlV~~s 286 (615)
.++|||+=|=||.|+.+.+.. .|+.+|.+...+..+..+.+. .++ .+.+...|+.. +. . ..++||+|++-
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 478999999999999886543 567776666555544433332 243 46777777532 11 1 24689999983
Q ss_pred cc-----ccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 287 RC-----RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 287 ~~-----~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
-- ...-..+...++..+.++|+|||.+++++-.
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 21 1111234466889999999999999877643
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.0094 Score=56.44 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=50.9
Q ss_pred CCCeEEEECCCCchHHHHH--h-cCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYL--L-SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L--~-~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
.++.++|+|||.|-++... . ...|.|+|+.+..+.... +.|.+..+++.+.++|...+-+..+.||.++.+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 3577999999999766333 2 336788877665543322 4445556777888999888888889999998654
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.024 Score=61.92 Aligned_cols=96 Identities=9% Similarity=0.089 Sum_probs=63.8
Q ss_pred CeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC-CCCCCceEEEecccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSRCR 289 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp-fpd~sFDlV~~s~~~ 289 (615)
-+|||+.||+|..+..++.. .|++.|+++.-+.... +.++..+. ++.+...|+..+- .....||+|..--
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~-~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIK-NNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 47999999999999988753 4666766654443222 22233333 3566667754432 1235799998432
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+ ..+..++..+.+.+++||.+.++..
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2 3445799999999999999999843
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.0037 Score=59.61 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=42.5
Q ss_pred CCCCCCCCCCceEEEecccccccccch--HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 270 TKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 270 ~~~Lpfpd~sFDlV~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
....+|.+++.|+|.|.+ +++|+... ..++++++|.|||||+|-+++|..
T Consensus 38 s~e~~F~dns~d~iyaeH-vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 38 SNESMFEDNSVDAIYAEH-VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred hhhccCCCcchHHHHHHH-HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 456689999999999998 68887543 468999999999999999999874
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.1 Score=54.21 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=71.3
Q ss_pred HHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHc----C--CCcE
Q 007165 196 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER----G--IPST 264 (615)
Q Consensus 196 ~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~er----g--~~~~ 264 (615)
+..+..+|+.. ++.+||+-|.|+|+++.+++.+ ++...| .++...+.|++. + -++.
T Consensus 94 ia~I~~~L~i~--------PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfe-----fH~~Ra~ka~eeFr~hgi~~~vt 160 (314)
T KOG2915|consen 94 IAMILSMLEIR--------PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFE-----FHETRAEKALEEFREHGIGDNVT 160 (314)
T ss_pred HHHHHHHhcCC--------CCCEEEecCCCcchHHHHHHHhhCcCcceEEEE-----ecHHHHHHHHHHHHHhCCCcceE
Confidence 45566777643 3578999999999999998864 444554 455555555443 4 3567
Q ss_pred EEEecCCCCCCC--CCCceEEEecccccccccchHHHHHHHHhccCCCe-EEEEEcCCC
Q 007165 265 LGVLGTKRLPYP--SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG-YFVYSSPEA 320 (615)
Q Consensus 265 ~~v~d~~~Lpfp--d~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG-~Lvis~P~~ 320 (615)
+..-|.....|. +..+|+|+.- ++.|..++--+..+||-+| +|+-.+|..
T Consensus 161 ~~hrDVc~~GF~~ks~~aDaVFLD------lPaPw~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 161 VTHRDVCGSGFLIKSLKADAVFLD------LPAPWEAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred EEEeecccCCccccccccceEEEc------CCChhhhhhhhHHHhhhcCceEEeccHHH
Confidence 777777666553 5789999732 3556667777788999876 666555543
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.073 Score=52.89 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=59.4
Q ss_pred CCCCeEEEECCCCchHHHH--HhcC-CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 214 GNIRNVLDVGCGVASFGAY--LLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~--L~~~-~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
-++++|||+|+|+|..+.. ++.+ .|+..|+.+.-. .+..-.+...|..+.+...|.-. .+..||+++.+..++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy 153 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFY 153 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccceeEEeeccccC---CCcceeEEEeeceec
Confidence 3568999999999965444 3333 677777765322 22223344556666666655433 557899999988433
Q ss_pred ccccchHHHHHHHHhccCC-CeEEEEEcCC
Q 007165 291 DWLQRDGILLLELDRLLRP-GGYFVYSSPE 319 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkP-GG~Lvis~P~ 319 (615)
.+ +.-.+++. +.+.|+. |-.+++-+|.
T Consensus 154 ~~-~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 154 NH-TEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred Cc-hHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 32 33345666 5555554 4445554554
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.037 Score=57.32 Aligned_cols=96 Identities=21% Similarity=0.232 Sum_probs=65.4
Q ss_pred eeeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHHhhcc-------c--ccccccccccCCCCC-Cccceecc
Q 007165 461 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDRG-------L--IGTVHDWCESFSTYP-RTYDLLHA 527 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy~RG-------l--iG~~hdwce~fstYp-rtyDl~Ha 527 (615)
..|+|..+|-|.++..|... +-+ +|+=+|- ++-|.+.-+|. . |-..+.-.|.++ +| .+||++.+
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V~~ 151 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAITM 151 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEEEE
Confidence 47999999999999888643 222 4555553 35565554442 1 122333345554 34 68999998
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 528 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 528 ~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
+..+..+. +...++-||-|+|||||.++|-|-
T Consensus 152 ~~~l~~~~----d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 152 GYGLRNVV----DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ecccccCC----CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 87776432 478899999999999999988763
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.013 Score=63.13 Aligned_cols=96 Identities=21% Similarity=0.305 Sum_probs=59.9
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhH----Hhhccccc---c-cccccc-cCCCCCCccceeccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGLIG---T-VHDWCE-SFSTYPRTYDLLHAW 528 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~----iy~RGliG---~-~hdwce-~fstYprtyDl~Ha~ 528 (615)
.-..|+|+.+|.|+++..|...- -.+|+=++- ++.+.. +-++|+-. . -.|..+ +|. +.+||+|.+.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~--~~~FD~V~s~ 193 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFE--DGQFDLVWSM 193 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCC--CCCccEEEEC
Confidence 44679999999999998887541 113332331 222221 22334421 1 123322 232 3799999987
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
..+..+. +...+|-||-|+|||||.++|-|
T Consensus 194 ~~~~h~~----d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMP----DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 7665443 35789999999999999999854
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.031 Score=55.02 Aligned_cols=133 Identities=18% Similarity=0.177 Sum_probs=72.0
Q ss_pred cCCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHH
Q 007165 175 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHEN 251 (615)
Q Consensus 175 ~g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a 251 (615)
.|-.+..|.+ ....+..+...+.+-.++... . -.+.++||+-||+|.++...+++ .|+.+|.+..-.. .
T Consensus 9 kgr~l~~p~~-~~~RPT~drvrealFniL~~~-~-----~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~-~ 80 (183)
T PF03602_consen 9 KGRKLKTPKG-DNTRPTTDRVREALFNILQPR-N-----LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIK-I 80 (183)
T ss_dssp TT-EEE-TT---TS-SSSHHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHH-H
T ss_pred CCCEecCCCC-CCcCCCcHHHHHHHHHHhccc-c-----cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHH-H
Confidence 3445555543 334445556666666666532 0 13478999999999999988765 4555555443222 1
Q ss_pred HHHHHHHcCCC--cEEEEecCC-CCC---CCCCCceEEEecccccccccc--hHHHHHHHH--hccCCCeEEEEEcC
Q 007165 252 QIQFALERGIP--STLGVLGTK-RLP---YPSRSFELAHCSRCRIDWLQR--DGILLLELD--RLLRPGGYFVYSSP 318 (615)
Q Consensus 252 ~i~~A~erg~~--~~~~v~d~~-~Lp---fpd~sFDlV~~s~~~l~~~~d--~~~~L~ei~--RvLkPGG~Lvis~P 318 (615)
..+.+...+.. +.+...|+. .++ .....||+|++-- +|... ...++..+. .+|+++|.+++...
T Consensus 81 i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 81 IKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 11222223433 566666632 221 2468899999643 23222 255677766 79999999999763
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.022 Score=55.82 Aligned_cols=111 Identities=15% Similarity=0.231 Sum_probs=70.6
Q ss_pred eeeeeccccchhHHhhhcC-CCcEEEEeccCCC-CCchhHH----hhccc--ccccccccccCCCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKII----YDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~-~~vwvmnvvp~~~-~~tL~~i----y~RGl--iG~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
.+|+|+.+|.|.++..|.. .+. ..|+=++. ++.+..+ -..|+ |-+.+.=.+.+. ...+||+|-+++ +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 5899999999977665431 121 23444443 2333222 22343 222322222232 357999998766 2
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhc-Cccce
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITAL-KWDGW 582 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~-~w~~~ 582 (615)
..+.+++-++.|+|+|||.+++.+......++..+...+ .|..+
T Consensus 119 ------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 119 ------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred ------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCce
Confidence 247788888999999999999999888888888887663 35553
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.11 Score=48.76 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=58.9
Q ss_pred CCCCeEEEECCCCchHHHHHhc-----C---CCccccCChhchhHHHHHHHHHcCC----CcEEEEecCCCCCCCCCCce
Q 007165 214 GNIRNVLDVGCGVASFGAYLLS-----H---DIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSFE 281 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~-----~---~V~gvdis~~Dls~a~i~~A~erg~----~~~~~v~d~~~Lpfpd~sFD 281 (615)
.+..+|+|+|||.|.++..|+. . .|+++|..+.....++ +.+++.+. ...+...+....+ .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ-KRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH-HHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4567899999999999998887 3 5666766554432222 33333331 1222332222211 145667
Q ss_pred EEEecccccccccchHH-HHHHHHhccCCCeEEEEEcCCCCC
Q 007165 282 LAHCSRCRIDWLQRDGI-LLLELDRLLRPGGYFVYSSPEAYA 322 (615)
Q Consensus 282 lV~~s~~~l~~~~d~~~-~L~ei~RvLkPGG~Lvis~P~~~~ 322 (615)
+++ ++|-..+... +|+-+.+ |+-.+++..|-.|+
T Consensus 102 ~~v----gLHaCG~Ls~~~l~~~~~---~~~~~l~~vpCCyh 136 (141)
T PF13679_consen 102 ILV----GLHACGDLSDRALRLFIR---PNARFLVLVPCCYH 136 (141)
T ss_pred EEE----EeecccchHHHHHHHHHH---cCCCEEEEcCCccc
Confidence 776 4666666643 4444444 77888888887764
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.031 Score=54.16 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=74.2
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHh----hccccccc--ccccccCCCCCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGLIGTV--HDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy----~RGliG~~--hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
++|+|+.+|.|.++.++..... .|+=++- ++.+...- ..|+-..+ -|+.+. .+.+||++-++--|-.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCC
Confidence 4699999999999988876532 4444442 33333221 12221111 244443 3569999988765532
Q ss_pred ccc-----------------CCCChhhhhhhhcccccCCcEEEEEcChhH-HHHHHHHHhhcCccce
Q 007165 534 IEE-----------------RGCSFEDLLIEMDRMLRPEGFVIIRDKSSI-INYIRKFITALKWDGW 582 (615)
Q Consensus 534 ~~~-----------------~~c~~~~i~~EmdRilRp~g~~iird~~~~-~~~~~~~~~~~~w~~~ 582 (615)
... ...-+.+++-|+.|+|+|||.+++-+.... ..++.+.++...++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYE 161 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEE
Confidence 210 112367889999999999999999876655 6777777777778763
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.14 Score=55.59 Aligned_cols=103 Identities=21% Similarity=0.258 Sum_probs=63.0
Q ss_pred CCCCeEEEECCCCchHHHHHhcC------CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCC--CC-CCCceEE
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP--YP-SRSFELA 283 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~------~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lp--fp-d~sFDlV 283 (615)
.++.+|||+.++.|+=+.++++. .|++.|+++.=+. .+.+..+..|+. +.....|...++ .+ ...||.|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~-~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLK-RLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHH-HHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 34588999999999777666643 1356655543222 222333444665 456666765554 22 2359999
Q ss_pred Ee----cc-cccccccc----------------hHHHHHHHHhccCCCeEEEEEc
Q 007165 284 HC----SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 284 ~~----s~-~~l~~~~d----------------~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+. +. .+++-.++ ..++|..+.++|||||.|+.++
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 86 11 12211111 2348899999999999999987
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.043 Score=55.01 Aligned_cols=97 Identities=19% Similarity=0.284 Sum_probs=59.0
Q ss_pred eeeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHHh----hccc--ccccccccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIY----DRGL--IGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy----~RGl--iG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
..|+|+.+|-|.++..|.+. +- .+|+=++- ++.+...- +.++ +-+.+.=.+.++--+.+||+|++...+
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPE--GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL 124 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc
Confidence 47999999999999888642 21 12222332 23332221 2232 222322223322113699999988766
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
..+. +...++-|+-|+|+|||.+++.|.
T Consensus 125 ~~~~----~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 125 RNVP----DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccCC----CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 5332 356789999999999999998764
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.075 Score=57.25 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=85.0
Q ss_pred hcCCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhH
Q 007165 174 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHE 250 (615)
Q Consensus 174 ~~g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~ 250 (615)
+.|-.|.++-...+|.++...=-..+.++.. .+.+|||+=+|.|.|+..++.. .|.++|+.|..+.-
T Consensus 157 E~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~----------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~ 226 (341)
T COG2520 157 ENGCRFKVDVAKVYFSPRLSTERARVAELVK----------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEY 226 (341)
T ss_pred cCCEEEEEchHHeEECCCchHHHHHHHhhhc----------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHH
Confidence 3344455544455566655433333444332 2568999999999999998754 37788887765433
Q ss_pred HHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 251 NQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 251 a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.. +.++.+++. +....+|+...+...+.||-|++.. ......++..+.+.|++||.+-+..
T Consensus 227 L~-eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~-----p~~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 227 LK-ENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL-----PKSAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred HH-HHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC-----CCcchhhHHHHHHHhhcCcEEEEEe
Confidence 32 334434443 5678889887776558899999654 2344668889999999999998765
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.03 Score=57.45 Aligned_cols=99 Identities=13% Similarity=0.200 Sum_probs=66.6
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhcccccccccccccCCCCCCccceeccccccc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
+....-..|+|+.+|-|.++.+|... |-. .|+=+|- ++.+...-++++ -+.+.--+.+. ...+||+|+++.+|-
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~--~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWPGA--VIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEEEehhhh
Confidence 44444478999999999999988754 221 3444443 456666666653 12221122332 235899999999887
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.+. +...++-|+=|+|+|||.++|-
T Consensus 101 ~~~----d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 101 WVP----EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hCC----CHHHHHHHHHHhCCCCcEEEEE
Confidence 443 3688999999999999999985
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.04 Score=54.64 Aligned_cols=98 Identities=26% Similarity=0.286 Sum_probs=61.6
Q ss_pred ceeeeeeccccchhHHhhhcCCC-cEEEEeccCCC-CCchhHHhhc--cccccc----ccccccCCCCCCccceeccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKD-VWVMNVAPVRM-SARLKIIYDR--GLIGTV----HDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~-vwvmnvvp~~~-~~tL~~iy~R--GliG~~----hdwce~fstYprtyDl~Ha~~~ 530 (615)
.=..|+|+.+|-|+++..+.+.- .-. +|+=++- ++.+...-++ +.-... .|-.+ ++--+-+||+||+..+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~-~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEG-RVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADG-LPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHHHhhCCCCceEEEeccccc-CCCCCCCceEEEEech
Confidence 33579999999999998886431 000 3333332 3445544444 111111 12111 1111368999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
|..+. +...++-++-|+|+|||++++-+
T Consensus 97 ~~~~~----~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 97 LQHLE----DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hhccC----CHHHHHHHHHHHhcCCcEEEEEe
Confidence 87543 47889999999999999998864
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.032 Score=57.84 Aligned_cols=98 Identities=21% Similarity=0.309 Sum_probs=58.6
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcc----cccccccccccCCCCC-Cccceeccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----LIGTVHDWCESFSTYP-RTYDLLHAWKVFSEI 534 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RG----liG~~hdwce~fstYp-rtyDl~Ha~~~fs~~ 534 (615)
..|+|..+|.|+++..|.... -.+|+=++- ++.+...-+|- -|-..+.=++.. .|| .+||+|++...|-.+
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-~~~~~~FD~V~s~~~l~h~ 130 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK-DFPENTFDMIYSRDAILHL 130 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC-CCCCCCeEEEEEhhhHHhC
Confidence 469999999999988885431 113333332 23333332221 121111111111 233 699999997655433
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
.. -+...++-|+-|+|+|||.++|.|-
T Consensus 131 ~~--~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 131 SY--ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CH--HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 21 1467899999999999999999864
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.14 Score=56.03 Aligned_cols=20 Identities=30% Similarity=0.783 Sum_probs=17.5
Q ss_pred CCCCCCceEEEeccccccccc
Q 007165 274 PYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 274 pfpd~sFDlV~~s~~~l~~~~ 294 (615)
-||+++.+++|++. ++||+.
T Consensus 157 LfP~~Slh~~~Ss~-slHWLS 176 (386)
T PLN02668 157 LFPARSIDVFHSAF-SLHWLS 176 (386)
T ss_pred ccCCCceEEEEeec-cceecc
Confidence 38899999999998 599976
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.064 Score=57.76 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=38.2
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--------------------CCccccCChhchhHHHHHHHHH-----cCCCcEE-EE
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALE-----RGIPSTL-GV 267 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~--------------------~V~gvdis~~Dls~a~i~~A~e-----rg~~~~~-~v 267 (615)
...-+|+|+||..|..+..+.+. +|.--|+-.+|.+.-....... ...++.. .+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 45578999999999777665421 1222355555543332221111 1122221 22
Q ss_pred -ecCCCCCCCCCCceEEEeccccccccc
Q 007165 268 -LGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 268 -~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+....--||+++.|+++++. ++||+.
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~-alHWLS 121 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSY-ALHWLS 121 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-S
T ss_pred CchhhhccCCCCceEEEEEec-hhhhcc
Confidence 22334448999999999998 599964
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.021 Score=56.50 Aligned_cols=93 Identities=19% Similarity=0.305 Sum_probs=60.8
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhH----Hhhccc---ccccccccccCCCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGL---IGTVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~----iy~RGl---iG~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
-+|+|..+|.|.++..|.+.. + +|+-+|. ++-+.. +-.+|+ -..-.|..+ + +.+.+||+|-+...|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g-~--~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANG-F--DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCC-C--EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 479999999999999998652 2 4444443 232222 233343 223345443 2 3467899999988765
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEE
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
.+.. -....++-+|-|.|+|||.+++
T Consensus 107 ~~~~--~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLEA--KTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCCH--HHHHHHHHHHHHHcCCCcEEEE
Confidence 3221 2467899999999999999655
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.016 Score=60.64 Aligned_cols=101 Identities=17% Similarity=0.431 Sum_probs=64.3
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCC-CCCchhH----HhhcccccccccccccCCCCCCccceeccc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLKI----IYDRGLIGTVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~-~~~tL~~----iy~RGliG~~hdwce~fstYprtyDl~Ha~ 528 (615)
+..|. .|+|..+|.||++-.+... .+ +|+=++ +++.... |-++||-+...==|.-|...|=+||-|=+-
T Consensus 60 l~~G~--~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi 134 (273)
T PF02353_consen 60 LKPGD--RVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSI 134 (273)
T ss_dssp --TT---EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEE
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEE
Confidence 55554 8999999999999999866 54 344333 2344443 568887543331122233333499999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+.|-.+..+ +....+-+++|.|+|||.+++..
T Consensus 135 ~~~Ehvg~~--~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 135 EMFEHVGRK--NYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SEGGGTCGG--GHHHHHHHHHHHSETTEEEEEEE
T ss_pred echhhcChh--HHHHHHHHHHHhcCCCcEEEEEe
Confidence 998876432 57889999999999999999873
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.057 Score=58.47 Aligned_cols=54 Identities=24% Similarity=0.375 Sum_probs=36.1
Q ss_pred eEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCC
Q 007165 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR 272 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~ 272 (615)
+|||+-||+|.|+..|++. .|+|+++.+..+..+. +.|+..++ ++.|..+++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--SEEEEE--SHH
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCcceEEEeeccc
Confidence 7999999999999999875 7888888776665554 34444454 57787766543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.03 Score=55.26 Aligned_cols=93 Identities=17% Similarity=0.280 Sum_probs=60.3
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHH----hhcccc--cccccccccCCCCCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII----YDRGLI--GTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~i----y~RGli--G~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
..|+|+.+|.|.++..|.... + .|+=+|- ++.+..+ -+.|+- +.-.|. +.++ +|.+||+|-+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g-~--~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~~-~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG-Y--DVRAWDHNPASIASVLDMKARENLPLRTDAYDI-NAAA-LNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC-C--eEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-hhcc-ccCCCCEEEEeccccc
Confidence 479999999999998887642 2 5555654 3444432 223431 111222 2222 3568999999888864
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEE
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
+.. -....++-++.|.|+|||+++|
T Consensus 107 ~~~--~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQA--GRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CCH--HHHHHHHHHHHHHhCCCcEEEE
Confidence 322 2467899999999999998554
|
Part of a tellurite-reducing operon tehA and tehB |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.14 Score=53.38 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=47.2
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCC----cEEEEecCCCCCCCCCCceEEEec
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP----STLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~----~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
.++..||++|.|||.++..|+++ .|+++++.+.++.+-.... .|.+ ..+..+|....++| .||.++++
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEecccccCCCc--ccceeecc
Confidence 34578999999999999999865 7888877766654333211 2333 45667776666544 69999853
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.061 Score=57.57 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=58.3
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCCC-Cchh---HHhh-ccc---ccccccccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLK---IIYD-RGL---IGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-~tL~---~iy~-RGl---iG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
+.|+|+.+|.|.++..|... +.-|. =+|.. ..+- .+-. .+. |-+.+.=-|.++. +.+||+|++.+++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~---GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVV---GIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEE---EEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 67999999999999888653 32232 22311 1110 1100 010 1111111234444 7899999999887
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
-.. -+...+|-++-|.|+|||.+|+.
T Consensus 200 ~H~----~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 200 YHR----RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred hcc----CCHHHHHHHHHHhcCCCcEEEEE
Confidence 632 35889999999999999999985
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.4 Score=48.39 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=54.8
Q ss_pred eEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcE-EEEecCCCCCCCCCCceEEEecccccccccch
Q 007165 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 296 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~-~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~ 296 (615)
+||=++=..|.++..|+...++.+ -.....+.+..+.+...+++.. +...+.. -+++ +.+|+|+.-. ---....
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~-~~~~-~~~d~vl~~~--PK~~~~l 121 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI-GDSYISELATRENLRLNGIDESSVKFLDST-ADYP-QQPGVVLIKV--PKTLALL 121 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee-ehHHHHHHHHHHHHHHcCCCcccceeeccc-cccc-CCCCEEEEEe--CCCHHHH
Confidence 599999999999999986655433 1111122333334444455432 2222221 1233 5599887321 1112233
Q ss_pred HHHHHHHHhccCCCeEEEEEc
Q 007165 297 GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 297 ~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+..|..+.++|.||+.++...
T Consensus 122 ~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 122 EQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHhhCCCCCEEEEEE
Confidence 557889999999999987544
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.07 Score=52.03 Aligned_cols=112 Identities=12% Similarity=0.121 Sum_probs=71.4
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhh----ccc--ccccccccccCCCCCCccceeccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGL--IGTVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~----RGl--iG~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
.-.+|+|+.+|-|.++.++... |- -+|+-++- +..+...-+ .|+ |=+.+ -..+...+..||++.+++.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~--~d~~~~~~~~~D~v~~~~~ 106 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPS--LQVTAIERNPDALRLIKENRQRFGCGNIDIIP--GEAPIELPGKADAIFIGGS 106 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEe--cCchhhcCcCCCEEEECCC
Confidence 3457999999999998877532 21 12333332 222332211 122 11111 0122345678999998764
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEc-ChhHHHHHHHHHhhcCccc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDG 581 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird-~~~~~~~~~~~~~~~~w~~ 581 (615)
.. .+.+++-++-|.|+|||.+++-+ ..+-..++.++++...++.
T Consensus 107 ~~-------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 107 GG-------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred cc-------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 32 47788889999999999999976 5666788888998888853
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.12 Score=50.89 Aligned_cols=142 Identities=11% Similarity=0.162 Sum_probs=81.9
Q ss_pred cCCChhhhhh--hHhhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcC-----CCcEEEEeccCCCCCchhH
Q 007165 426 VGVTTEEFHE--DIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD-----KDVWVMNVAPVRMSARLKI 498 (615)
Q Consensus 426 ~g~~~~~~~~--d~~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~-----~~vwvmnvvp~~~~~tL~~ 498 (615)
.|++.++|.. +...|++.+..= .+. .++-..=-.|+||.||-|.|+.++.. ..|...-.-| .-+..
T Consensus 8 ~~~~d~~~~~~~~~~~t~~~~r~~--~l~-~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~----~~~~~ 80 (198)
T PRK00377 8 PGIPDEEFERDEEIPMTKEEIRAL--ALS-KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE----KAINL 80 (198)
T ss_pred CCCChHHHccCCCCCCCHHHHHHH--HHH-HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH----HHHHH
Confidence 3666777775 445787777631 121 12222234799999999999776532 2344443322 22222
Q ss_pred Hhh----ccccc---c-cccccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEE-cChhHHHH
Q 007165 499 IYD----RGLIG---T-VHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINY 569 (615)
Q Consensus 499 iy~----RGliG---~-~hdwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~ 569 (615)
+-+ -|+.. + -.|..+..+.++-.||++...+- ...+..++-++-|+|+|||.+++. -+.+.+.+
T Consensus 81 a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~-------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 153 (198)
T PRK00377 81 TRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG-------SEKLKEIISASWEIIKKGGRIVIDAILLETVNN 153 (198)
T ss_pred HHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC-------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHH
Confidence 111 12211 1 12333333334457888776431 134788899999999999999982 34556777
Q ss_pred HHHHHhhcCccc
Q 007165 570 IRKFITALKWDG 581 (615)
Q Consensus 570 ~~~~~~~~~w~~ 581 (615)
+...++.+.++.
T Consensus 154 ~~~~l~~~g~~~ 165 (198)
T PRK00377 154 ALSALENIGFNL 165 (198)
T ss_pred HHHHHHHcCCCe
Confidence 888887666654
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.19 Score=51.07 Aligned_cols=126 Identities=14% Similarity=0.182 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC-C--CCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y--PSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp-f--pd~sFDlV~~s 286 (615)
++.+||-+|+++|....++++ ..|.++++++... ...+..|++|. ++.-...|+..-. | --..+|+|++-
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R~-NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKRP-NIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHST-TEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccCC-ceeeeeccCCChHHhhcccccccEEEec
Confidence 446899999999988888774 2577888888654 45567787774 4444556654211 1 12479999964
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcCC--CCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE--AYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~--~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
- ......+.++.++...||+||.++++... ... .......+..-.+.++...++..
T Consensus 151 V---aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~-t~~p~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 151 V---AQPDQARIAALNARHFLKPGGHLIISIKARSIDS-TADPEEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp ----SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-S-SSSHHHHHHHHHHHHHCTTCEEE
T ss_pred C---CChHHHHHHHHHHHhhccCCcEEEEEEecCcccC-cCCHHHHHHHHHHHHHHcCCChh
Confidence 3 22233355788899999999999997632 111 11222445544444444444444
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.07 Score=53.03 Aligned_cols=121 Identities=14% Similarity=0.117 Sum_probs=75.4
Q ss_pred eeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHh----hccc--ccccc-cccccCCC-C-CCccceeccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY----DRGL--IGTVH-DWCESFST-Y-PRTYDLLHAW 528 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy----~RGl--iG~~h-dwce~fst-Y-prtyDl~Ha~ 528 (615)
-.+|+|+.+|.|.++.+|... |- -+|+=++- ++-+...- ..|+ +-+.+ |+.+.++. + +.+||++-.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 468999999999999888643 32 13333332 22222221 1232 11222 33244442 3 5789999764
Q ss_pred ccccc----cccCCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhhcCccce
Q 007165 529 KVFSE----IEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDGW 582 (615)
Q Consensus 529 ~~fs~----~~~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~~~w~~~ 582 (615)
..... -..++.....+|-|+.|+|+|||.++|. +....+..+.+.+..-.|.++
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 32210 1122334688999999999999999885 788888888888888888873
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.035 Score=60.81 Aligned_cols=95 Identities=19% Similarity=0.391 Sum_probs=63.2
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCC-CCCchhHHhhc--ccccccccccccCCCCCCccceeccccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLKIIYDR--GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 536 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~-~~~tL~~iy~R--GliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~ 536 (615)
..|+|+.+|.|+++..+... .+ .|+=++ +++.+...-+| |+ ++ +=-+..+...+.+||+|.+.++|.....
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEEEeCchhhCCh
Confidence 47999999999999877653 32 455544 34555554443 22 11 1011122223678999999998875432
Q ss_pred CCCChhhhhhhhcccccCCcEEEEEc
Q 007165 537 RGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 537 ~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
-+...++-++.|+|+|||.+++.+
T Consensus 244 --~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 244 --KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 246789999999999999999964
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.1 Score=55.71 Aligned_cols=94 Identities=12% Similarity=0.065 Sum_probs=57.6
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCCCc-hh---HH----hhcccccccccccccCCCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSAR-LK---II----YDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~~t-L~---~i----y~RGliG~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
+.|+|..+|-|.++.++.....- .|+=+|.... +. .+ -..+.+....-=-|.++. +-+||+|-+.+++-
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhh
Confidence 68999999999998777654321 2343332111 10 10 001111111111223332 24799999999876
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.+ -+..++|-|+-|+|||||.+|+.
T Consensus 200 H~----~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 200 HR----KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred cc----CCHHHHHHHHHHhcCCCCEEEEE
Confidence 43 36899999999999999999975
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.17 Score=59.69 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=73.3
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhh----cccc----c-ccccccccCCCCCCccceecccc-
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLI----G-TVHDWCESFSTYPRTYDLLHAWK- 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~----RGli----G-~~hdwce~fstYprtyDl~Ha~~- 529 (615)
++|+|..||.|+|+.++.....- .|+-+|.. .-|.+.-+ -|+= = +-.|..+.+...+++||+|=.|-
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 58999999999999888765332 25555543 44444322 1221 1 12243332223368999997652
Q ss_pred ----------cccccccCCCChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCcccee
Q 007165 530 ----------VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWL 583 (615)
Q Consensus 530 ----------~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~~~ 583 (615)
+|+. .+ ...+++-..=|+|+|||.+++-....-+....+.+..-.++.+.
T Consensus 618 ~f~~~~~~~~~~~~-~~---~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~ 677 (702)
T PRK11783 618 TFSNSKRMEDSFDV-QR---DHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEE 677 (702)
T ss_pred CCCCCCccchhhhH-HH---HHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEE
Confidence 2221 11 25677777789999999999976666666667777777888753
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.032 Score=58.45 Aligned_cols=111 Identities=14% Similarity=0.256 Sum_probs=70.4
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhH----HhhcccccccccccccCCC--CCCccceeccccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLIGTVHDWCESFST--YPRTYDLLHAWKVFSEI 534 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~----iy~RGliG~~hdwce~fst--YprtyDl~Ha~~~fs~~ 534 (615)
+|+|..+|.|.++..|.... ..|+=+|.. ..+.. +-+.|+ . .+--+.-+.+ .+..||+|-+..+|..+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhhC
Confidence 79999999999998887653 245555542 33332 234455 1 1111111111 27899999999887744
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEE---cCh-----------hHHHHHHHHHhhcCccc
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIR---DKS-----------SIINYIRKFITALKWDG 581 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iir---d~~-----------~~~~~~~~~~~~~~w~~ 581 (615)
.. -.+..++-+|-|.|+|||++++- ++. ---++++.+... |++
T Consensus 198 ~~--~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i 254 (287)
T PRK12335 198 NR--ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEI 254 (287)
T ss_pred CH--HHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEE
Confidence 32 25788999999999999995542 111 124567777766 876
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.092 Score=55.16 Aligned_cols=111 Identities=12% Similarity=0.143 Sum_probs=66.0
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----ccccccccccccC-CCCCCccceeccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GLIGTVHDWCESF-STYPRTYDLLHAWKVFSEI 534 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----GliG~~hdwce~f-stYprtyDl~Ha~~~fs~~ 534 (615)
..|+|+.+|.|.++.++...... .|+=+|- +..+...-++ |+-...++-+... ..-+..||++.++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 57999999999987776544321 3333332 2333332221 2211122222211 22246899999986544
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEEcCh-hHHHHHHHHHhhcCccc
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWDG 581 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iird~~-~~~~~~~~~~~~~~w~~ 581 (615)
.+..++-++-|+|+|||++|+..-. +-.++|.+.+++- |+.
T Consensus 237 -----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~ 278 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTV 278 (288)
T ss_pred -----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cce
Confidence 2567888999999999999997532 2245566666655 765
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.64 Score=46.07 Aligned_cols=134 Identities=21% Similarity=0.187 Sum_probs=74.6
Q ss_pred CCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHH
Q 007165 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQ 252 (615)
Q Consensus 176 g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~ 252 (615)
|-.+.+|.+ ....+-.++..+.+-.++... .-.+.++||+=+|+|.++...+++ .++.+|.+..-....
T Consensus 11 gr~L~~p~~-~~~RPT~drVREalFNil~~~------~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l- 82 (187)
T COG0742 11 GRKLKTPDG-PGTRPTTDRVREALFNILAPD------EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKIL- 82 (187)
T ss_pred CCcccCCCC-CCcCCCchHHHHHHHHhcccc------ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHH-
Confidence 444555543 334445555666666666521 124578999999999999998876 455554433222111
Q ss_pred HHHHHHcC--CCcEEEEecCCCC-CCCCC--CceEEEeccccccc-ccchHHHHH--HHHhccCCCeEEEEEcC
Q 007165 253 IQFALERG--IPSTLGVLGTKRL-PYPSR--SFELAHCSRCRIDW-LQRDGILLL--ELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 253 i~~A~erg--~~~~~~v~d~~~L-pfpd~--sFDlV~~s~~~l~~-~~d~~~~L~--ei~RvLkPGG~Lvis~P 318 (615)
.+..+..+ .+..+...|+... +-... +||+|+.-- -++. +.+....+. +-..+|+|||.+++-..
T Consensus 83 ~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP-Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 83 KENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP-PYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC-CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 12222234 4566666675532 21223 499999643 2221 111122233 35678999999999653
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.045 Score=56.18 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=63.3
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----ccccc---ccc-cccccCC-CCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGLIG---TVH-DWCESFS-TYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGliG---~~h-dwce~fs-tYprtyDl~Ha~~~ 530 (615)
..|+|..+|.|.++..|.... -+|+=++- ++-+...-+ .|+.. +.+ |.. .+. .-+.+||++.+.++
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~-~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQ-DIAQHLETPVDLILFHAV 121 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHH-HHhhhcCCCCCEEEehhH
Confidence 489999999999999998763 25555553 345544332 34422 111 111 122 23579999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
+..+. +...++-|+-|+|+|||.++|-
T Consensus 122 l~~~~----~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWVA----DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhhC----CHHHHHHHHHHHcCCCeEEEEE
Confidence 87543 3578999999999999999874
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.19 Score=51.58 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=64.6
Q ss_pred eeeeeccccchhHHhhhcCCC---cEEEEeccCCCCCchhHHh----hcccccccccccccCCCCCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKD---VWVMNVAPVRMSARLKIIY----DRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~---vwvmnvvp~~~~~tL~~iy----~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
.+|+|+.+|.|..+.++.... |..+-.-| .-+...- ..|+-...+-.+. . -+||++.|+-+..
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~----~~l~~A~~n~~~~~~~~~~~~~~~---~--~~fD~Vvani~~~- 190 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDP----QAVEAARENAELNGVELNVYLPQG---D--LKADVIVANILAN- 190 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCH----HHHHHHHHHHHHcCCCceEEEccC---C--CCcCEEEEcCcHH-
Confidence 579999999998887776442 44333322 2222221 1232110110010 0 1799999875433
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEcCh-hHHHHHHHHHhhcCccc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWDG 581 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird~~-~~~~~~~~~~~~~~w~~ 581 (615)
.+..++-++-|.|+|||.+|+.+-. +-.+.+.+.+....++.
T Consensus 191 ------~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~ 233 (250)
T PRK00517 191 ------PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTL 233 (250)
T ss_pred ------HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEE
Confidence 1456778999999999999998643 34667778888888876
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.097 Score=50.73 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=41.3
Q ss_pred eEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCC--CCCCC-ceEEEec
Q 007165 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP--YPSRS-FELAHCS 286 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lp--fpd~s-FDlV~~s 286 (615)
+|+|+.||.|..+.+++.. .|+++|+.+.-+.-++ ..|+-.|+ ++.+..+|...+. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999876 5888877665543333 34444465 4788888854331 12122 8999975
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.27 Score=49.53 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=67.0
Q ss_pred cCCceeeeeeccccchhHHhhhcC---CCcEEEEeccCCC-CCchhHHhhccc-cc--ccccccccCCCCCCccceeccc
Q 007165 456 QKNTFRNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLKIIYDRGL-IG--TVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 456 ~~~~~Rnvmdm~a~~ggfaaal~~---~~vwvmnvvp~~~-~~tL~~iy~RGl-iG--~~hdwce~fstYprtyDl~Ha~ 528 (615)
....-..|+|..+|.|+++.+|.. +.-...+|+-+|- ++-|.....+.- -| ...-=++.++.-+.+||++-++
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 334556899999999999888753 1112246777774 466666555421 01 1111134455556899999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
..|..+... ++..+|-||-|++| |.++|.|-
T Consensus 137 ~~lhh~~d~--~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 137 HFLHHLDDA--EVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred CeeecCChH--HHHHHHHHHHHhcC--eeEEEecc
Confidence 988755332 25679999999999 66667663
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.22 Score=47.77 Aligned_cols=117 Identities=15% Similarity=0.244 Sum_probs=76.0
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHH---------hhcccccccccccccCCCCCCccceecccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII---------YDRGLIGTVHDWCESFSTYPRTYDLLHAWK 529 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~i---------y~RGliG~~hdwce~fstYprtyDl~Ha~~ 529 (615)
-..|+|+.+|-|.++.+|.... -+|+=++- ++.+... -+||+.-+-+|+.+.+.. .+||++=++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~ 98 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNP 98 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECC
Confidence 3479999999999999987663 25555543 3444433 123344456777776653 3799996554
Q ss_pred cccccc-----------------cCCCChhhhhhhhcccccCCcEEEEEcC-hhHHHHHHHHHhhcCccc
Q 007165 530 VFSEIE-----------------ERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDG 581 (615)
Q Consensus 530 ~fs~~~-----------------~~~c~~~~i~~EmdRilRp~g~~iird~-~~~~~~~~~~~~~~~w~~ 581 (615)
-|.... .....+.+++-++.|+|+|+|.+++=-. ..-.+++.+.+....|+.
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEA 168 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCee
Confidence 432100 0012356789999999999998876422 233577888888888876
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.21 Score=51.09 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=59.8
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCC-CchhHHhhcc-cccccccccccCCCCCCccceecccccc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRG-LIGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-~tL~~iy~RG-liG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
+....-.+|+|..+|-|.++..|... |. -+|+=+|-. .-+...-++- =+.+...=.+.+. -+.+||+++++..|
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l 103 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWPA--ARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASL 103 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccCh
Confidence 33345578999999999999888643 21 122222321 2222111110 0111111111221 24689999999988
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
..+. +...++-+|-|+|+|||.+++.
T Consensus 104 ~~~~----d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 104 QWLP----DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred hhCC----CHHHHHHHHHHhcCCCcEEEEE
Confidence 7443 3678999999999999999985
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.46 Score=49.90 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=51.6
Q ss_pred CCCeEEEECCCCchHHHHHh-cCCCccccCChhchhHHHHHHHHH-------cCCCcEEEEecCCCCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLL-SHDIIAMSLAPNDVHENQIQFALE-------RGIPSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~-~~~V~gvdis~~Dls~a~i~~A~e-------rg~~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
.+++|+=||||.=-++..+. +....+..+...|.+++.++.+++ .+..+.|..+|....+..-..||+|+.+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 35699999999876655544 221112222233344444444322 2446788888877766555789999976
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
..+-.-..+..++|..+.+.++||..+++-.
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 5322122356789999999999999999854
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.098 Score=51.95 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=58.4
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhccc--ccccccccccCCCCCCccceeccccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 536 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~RGl--iG~~hdwce~fstYprtyDl~Ha~~~fs~~~~ 536 (615)
..|+|..+|-|.+...|... +.. .|+-++. ++-+...-.+.- +-.++.=.+.++-.+.+||+|.+++++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~-- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA--EFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC-- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC--cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhc--
Confidence 57999999999999888643 111 1122221 111111111110 011111123334345789999999887633
Q ss_pred CCCChhhhhhhhcccccCCcEEEEEc
Q 007165 537 RGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 537 ~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
.+...++-++-|+|+|||++++..
T Consensus 112 --~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 --DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 247889999999999999999864
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.22 Score=49.00 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=59.6
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhccc----ccc-cccccccCCCCCCccceecccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL----IGT-VHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~RGl----iG~-~hdwce~fstYprtyDl~Ha~~~f 531 (615)
.=.+|+|..+|.|+++.++... +. --+++-++. +..+..+-++.- +-. ..|-.| .+.-+-+||+|+....+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeee
Confidence 3458999999999998887633 21 012333332 233333333321 111 112212 12123589999987766
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
... .++..++-++-++|+|||.+++-+.
T Consensus 117 ~~~----~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 117 RNV----TDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCc----ccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 532 3578899999999999999998653
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.031 Score=49.18 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=37.7
Q ss_pred EEECCCCchHHHHHhcC-------CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCC--CCCCCCceEEEeccc
Q 007165 220 LDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL--PYPSRSFELAHCSRC 288 (615)
Q Consensus 220 LDIGCGtG~~a~~L~~~-------~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~L--pfpd~sFDlV~~s~~ 288 (615)
||||+..|..+..+++. .+.++|..+. .+...+..++.+. .+.+..++.... .++.++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999888777642 3566666553 1122233333222 467777765322 13357899999543
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-|-.+.....+..+.+.|+|||.+++.+
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3333445668899999999999999853
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.14 Score=54.35 Aligned_cols=71 Identities=15% Similarity=-0.083 Sum_probs=40.3
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC---CCcEEEEecCCCCC--CCCC--CceEEEec
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLP--YPSR--SFELAHCS 286 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~d~~~Lp--fpd~--sFDlV~~s 286 (615)
+..+||.+||.|..+..+++..-....+.+.|.++.+++.|+++- .++.+...+...+. .+++ +||.|++-
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEEC
Confidence 468999999999999999865100123334455566666666542 23455555543332 1111 56666543
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.84 Score=45.85 Aligned_cols=116 Identities=15% Similarity=0.171 Sum_probs=70.7
Q ss_pred EEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecC-CCCCCCCCCceEEEecccccc
Q 007165 219 VLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGT-KRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 219 VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~-~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
|.||||--|.++.+|.+. .++++|+++.-+..+....+ ..|+ .+.+..+|. ..++ +....|.|+.+.+.-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~-~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIA-KYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH-HTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHH
Confidence 689999999999999865 57788888877666654443 3343 467777773 4443 2233788887653221
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEee
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~ 349 (615)
-...+|.+....++..-.|++.-... ...++..+....|.+..+.
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP~~~----------~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQPNTH----------AYELRRWLYENGFEIIDED 123 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEESS-----------HHHHHHHHHHTTEEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeCCCC----------hHHHHHHHHHCCCEEEEeE
Confidence 23457777777777777788754221 4567778888899887554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.17 Score=54.24 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=65.0
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhhc----cc---ccccccccccCCCCCCccceecccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~R----Gl---iG~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
.|+|..+|-|.|+.+|.... .+|+=+|.. .-+.+.-++ ++ |-..+.=.|.+...+.+||++=+.+++..
T Consensus 134 ~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 79999999999998887542 245555543 444444333 22 11222223444444579999999998875
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+. +...+|-||=|+|+|||.++|-+
T Consensus 211 v~----d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 211 VA----NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred cC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 54 47899999999999999999875
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.19 Score=50.32 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=21.0
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccC
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSL 243 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdi 243 (615)
-.+.|||||.|.+...|+.. -+.|++|
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehh
Confidence 34899999999999888754 4566654
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.087 Score=52.49 Aligned_cols=152 Identities=14% Similarity=0.261 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCC--CcEEEEeccCCC---CCch----hHHhhccccccc
Q 007165 438 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM---SARL----KIIYDRGLIGTV 508 (615)
Q Consensus 438 ~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~---~~tL----~~iy~RGliG~~ 508 (615)
..|-++.+ |...|...+...+|+|+++..++-|-|.+.|... .+-++-++|..- ...| .|-+-++-+
T Consensus 23 ~~~YE~~K-~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dv--- 98 (201)
T PF05401_consen 23 TSWYERRK-YRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADV--- 98 (201)
T ss_dssp T-HHHHHH-HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-T---
T ss_pred CCHHHHHH-HHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcC---
Confidence 45666654 3233332478999999999999999999999754 688888877531 1111 122222222
Q ss_pred ccccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcChh----------HHHHHHHHHhhcC
Q 007165 509 HDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------IINYIRKFITALK 578 (615)
Q Consensus 509 hdwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~----------~~~~~~~~~~~~~ 578 (615)
.+..+ +.+|||||.+.++--+.. .=++..++-.|...|+|||.+|+=.-.+ =.+-|..++...-
T Consensus 99 ---p~~~P--~~~FDLIV~SEVlYYL~~-~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~ 172 (201)
T PF05401_consen 99 ---PEFWP--EGRFDLIVLSEVLYYLDD-AEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHL 172 (201)
T ss_dssp ---TT-----SS-EEEEEEES-GGGSSS-HHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHS
T ss_pred ---CCCCC--CCCeeEEEEehHhHcCCC-HHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHh
Confidence 22222 589999999998874432 1236667888999999999999954332 1234455555544
Q ss_pred ccceeeccccccCcCCCCCceEEEEE
Q 007165 579 WDGWLSEVEPRIDALSSSEERVLIAK 604 (615)
Q Consensus 579 w~~~~~~~~~~~~~~~~~~e~~l~~~ 604 (615)
=++.....++.. ..|.-|+++
T Consensus 173 ~~~~~~~~~~~~-----~~~~~~~~~ 193 (201)
T PF05401_consen 173 TEVERVECRGGS-----PNEDCLLAR 193 (201)
T ss_dssp EEEEEEEEE-SS-----TTSEEEEEE
T ss_pred hheeEEEEcCCC-----CCCceEeee
Confidence 454333333222 246666654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.28 Score=51.10 Aligned_cols=101 Identities=14% Similarity=0.203 Sum_probs=51.7
Q ss_pred CCCeEEEECCCCc--hHHHHHh-----cCCCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCC-----------
Q 007165 215 NIRNVLDVGCGVA--SFGAYLL-----SHDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLP----------- 274 (615)
Q Consensus 215 ~~~~VLDIGCGtG--~~a~~L~-----~~~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lp----------- 274 (615)
..+..||||||.= ......+ +++|.-+|..+.-+..+..-. ....+ ..+..+|..+..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL--~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALL--ADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHH--TT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhh--cCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 5688999999954 2333343 346777877665443322111 22234 677888865421
Q ss_pred C-CCCCceEEEecccccccccc---hHHHHHHHHhccCCCeEEEEEcCC
Q 007165 275 Y-PSRSFELAHCSRCRIDWLQR---DGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 275 f-pd~sFDlV~~s~~~l~~~~d---~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+ .++.+=+++ ..++||++| +..++..+...|.||.+|+++...
T Consensus 146 lD~~rPVavll--~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 146 LDFDRPVAVLL--VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp --TTS--EEEE--CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCCCCCeeeee--eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 0 123333333 337999866 467999999999999999998754
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.45 Score=48.47 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=47.1
Q ss_pred EEEecCCCC--CCCCCCceEEEecccc-c--c-----------cccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHH
Q 007165 265 LGVLGTKRL--PYPSRSFELAHCSRCR-I--D-----------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328 (615)
Q Consensus 265 ~~v~d~~~L--pfpd~sFDlV~~s~~~-l--~-----------~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~ 328 (615)
+..+|..++ .++++++|+|+..--- + . +..-....+.|+.|+|||||.+++.... ..
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~--~~----- 76 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW--NR----- 76 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc--cc-----
Confidence 445554332 4677888888875200 0 0 0011246889999999999999864321 11
Q ss_pred HHHHHHHHHHhhcceEEEEeeCceEEEeccCC
Q 007165 329 RIWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 360 (615)
Q Consensus 329 ~~w~~l~~La~~l~W~l~~~~~~~aiwqKP~~ 360 (615)
...+....+...|.+. +..||.|+..
T Consensus 77 --~~~~~~al~~~GF~l~----~~IiW~K~~~ 102 (227)
T PRK13699 77 --VDRFMAAWKNAGFSVV----GHLVFTKNYT 102 (227)
T ss_pred --HHHHHHHHHHCCCEEe----eEEEEECCCC
Confidence 1223334455566544 4568998643
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.1 Score=52.95 Aligned_cols=96 Identities=11% Similarity=0.126 Sum_probs=59.7
Q ss_pred eeeeeccccchhHHhhhcCC---CcEEEEeccCCC-CCchhHHhhc----ccc---c-ccccccccCCCCCCccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRM-SARLKIIYDR----GLI---G-TVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~---~vwvmnvvp~~~-~~tL~~iy~R----Gli---G-~~hdwce~fstYprtyDl~Ha~ 528 (615)
..|+|..+|-|.++.+|.+. |-+ +|+-+|- ++-|...-++ |.. = +..|.++ ++ +..+|++.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~--~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~--~~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VE--IKNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC--CCCCCEEeee
Confidence 46999999999999888653 433 3444543 3444333221 211 0 1123332 11 1358998877
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
..+..+... +...+|-||-|+|+|||.+++.|.
T Consensus 130 ~~l~~~~~~--~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPPE--DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCHH--HHHHHHHHHHHhcCCCeEEEEeec
Confidence 766643211 256899999999999999999975
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.4 Score=47.64 Aligned_cols=94 Identities=16% Similarity=0.277 Sum_probs=59.3
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----ccc------ccccccccccCCCCCCccceeccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL------IGTVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGl------iG~~hdwce~fstYprtyDl~Ha~ 528 (615)
-.+|+|+.+|-|.++..|.+... .|+=++. +..+...-. -|+ .+-..+|.. ..|-+||+|.+.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~D~i~~~ 119 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE---KGAKSFDVVTCM 119 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc---CCCCCccEEEeh
Confidence 34799999999999887764321 1222222 122222211 122 122223322 225789999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
+++... -+...++-++-++|+|+|.+++.+.
T Consensus 120 ~~l~~~----~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 120 EVLEHV----PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hHHHhC----CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 887743 2578899999999999999999753
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.45 Score=49.27 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEE
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGV 267 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v 267 (615)
....+.+.+.+.+. +...|||||+|+|.++..|++. ++++++.. ....+..+++ ..++.+..
T Consensus 16 ~~~~~~Iv~~~~~~--------~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d-----~~~~~~L~~~~~~~~~~~vi~ 82 (262)
T PF00398_consen 16 PNIADKIVDALDLS--------EGDTVLEIGPGPGALTRELLKRGKRVIAVEID-----PDLAKHLKERFASNPNVEVIN 82 (262)
T ss_dssp HHHHHHHHHHHTCG--------TTSEEEEESSTTSCCHHHHHHHSSEEEEEESS-----HHHHHHHHHHCTTCSSEEEEE
T ss_pred HHHHHHHHHhcCCC--------CCCEEEEeCCCCccchhhHhcccCcceeecCc-----HhHHHHHHHHhhhcccceeee
Confidence 44566666666533 3478999999999999999864 56666554 4444555543 45688889
Q ss_pred ecCCCCCCCC---CCceEEEecccccccccchHHHHHHHHhccCC
Q 007165 268 LGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRP 309 (615)
Q Consensus 268 ~d~~~Lpfpd---~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkP 309 (615)
.|...+..+. +.-..|++ + +.+ .-...++.++...-+.
T Consensus 83 ~D~l~~~~~~~~~~~~~~vv~-N--lPy-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 83 GDFLKWDLYDLLKNQPLLVVG-N--LPY-NISSPILRKLLELYRF 123 (262)
T ss_dssp S-TTTSCGGGHCSSSEEEEEE-E--ETG-TGHHHHHHHHHHHGGG
T ss_pred cchhccccHHhhcCCceEEEE-E--ecc-cchHHHHHHHhhcccc
Confidence 9988877654 34455553 3 444 1223456666553333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.33 Score=48.95 Aligned_cols=117 Identities=19% Similarity=0.363 Sum_probs=73.4
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHH----hhccc--ccccc-cccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKII----YDRGL--IGTVH-DWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~i----y~RGl--iG~~h-dwce~fstYprtyDl~Ha~~~f 531 (615)
.+|+|..+|-|.|+.++... |-+ +|+-++- +..+... -..|+ +-+++ |+-+.|. +.+||+|-++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA--RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCCC
Confidence 36999999999999998754 322 4444442 2333322 22343 22222 3333332 3689999886554
Q ss_pred cc------cccCCCC----------------hhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCccc
Q 007165 532 SE------IEERGCS----------------FEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDG 581 (615)
Q Consensus 532 s~------~~~~~c~----------------~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~ 581 (615)
.. +...... ...++-++-|+|+|||.+++.....-.+++++++....++.
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFAD 236 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCc
Confidence 42 1000000 23567789999999999999887777888999998888764
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.16 Score=51.07 Aligned_cols=95 Identities=14% Similarity=0.272 Sum_probs=61.8
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhhc----cccccc--ccccccCCCCCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTV--HDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~R----GliG~~--hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
..|+|+.+|-|.++..|.+.. .+|+=++.. +.+...-++ |+-..+ .|+.+-....+-+||+|.++++|..
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 359999999999998887653 345545432 333332222 332222 2332221123368999999988774
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
.. +...+|-++.|+|+|||.+++.+
T Consensus 127 ~~----~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 127 VP----DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred cC----CHHHHHHHHHHHcCCCcEEEEEe
Confidence 32 47889999999999999999975
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.39 Score=49.90 Aligned_cols=135 Identities=13% Similarity=0.183 Sum_probs=81.7
Q ss_pred CChhhhhhhHhhHHHHHHHHHHhhhccccCCceeeeeeccccchh----HHhhhcC----CCcEEEEeccCCC-CCchhH
Q 007165 428 VTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGG----FAAALKD----KDVWVMNVAPVRM-SARLKI 498 (615)
Q Consensus 428 ~~~~~~~~d~~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~gg----faaal~~----~~vwvmnvvp~~~-~~tL~~ 498 (615)
+.+..|-.|...|....+.....+......+.--+|.|..++-|- .|..|.+ .+.|...|+=+|- +.-|-.
T Consensus 68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 68 TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 345568888899998777543322111112233579999999995 4544432 1235556766663 243432
Q ss_pred Hhhccc-----------------------------------ccccccccccCCCCCCccceecccccccccccCCCChhh
Q 007165 499 IYDRGL-----------------------------------IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFED 543 (615)
Q Consensus 499 iy~RGl-----------------------------------iG~~hdwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~ 543 (615)
. .+|. .=..||=.+.-. -+..||+|.+.++|..+... ....
T Consensus 148 A-r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~crnvl~yf~~~--~~~~ 223 (264)
T smart00138 148 A-RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-PLGDFDLIFCRNVLIYFDEP--TQRK 223 (264)
T ss_pred H-HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEechhHHhCCHH--HHHH
Confidence 1 1111 001345454311 25789999999888744221 2567
Q ss_pred hhhhhcccccCCcEEEEEcChhH
Q 007165 544 LLIEMDRMLRPEGFVIIRDKSSI 566 (615)
Q Consensus 544 i~~EmdRilRp~g~~iird~~~~ 566 (615)
++-+|-|+|+|||+++|-....+
T Consensus 224 ~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 224 LLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred HHHHHHHHhCCCeEEEEECcccC
Confidence 99999999999999999876544
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.26 Score=40.69 Aligned_cols=95 Identities=20% Similarity=0.326 Sum_probs=56.5
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHh---hcc---cccccccccccCC-CCCCccceecccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY---DRG---LIGTVHDWCESFS-TYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy---~RG---liG~~hdwce~fs-tYprtyDl~Ha~~~fs~ 533 (615)
.|+|..+|.|+++..+...+. .+++-.+.. +-+...- ..+ .+=.++.=.+.+. .-+.+||++.+++.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 378999999999988876322 222222321 1111111 111 1112221122222 23578999999998873
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
... ....++-.+.+.|||+|.+++.
T Consensus 79 ~~~---~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVE---DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhh---HHHHHHHHHHHHcCCCCEEEEE
Confidence 222 4678888889999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.14 Score=44.96 Aligned_cols=96 Identities=23% Similarity=0.291 Sum_probs=59.2
Q ss_pred eeeeccccchhHHhhhcC-CCcEEEEeccCCC-CCchhHHhhc----cccc----ccccccccCCCCCCccceecccccc
Q 007165 462 NVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIYDR----GLIG----TVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~-~~vwvmnvvp~~~-~~tL~~iy~R----GliG----~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
.|+|+.+|.|.++.+|.+ .+-.- |+=++- +..+.+.-+| ++-. +-.|+.+. ...+-.||++.+.+ |
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~--v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~~-~ 79 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGAR--VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFD-PDFLEPFDLVICSG-F 79 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSE--EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGG-TTTSSCEEEEEECS-G
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCE--EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccC-cccCCCCCEEEECC-C
Confidence 589999999999999987 23332 333332 3344433222 2211 22344233 33444599999999 3
Q ss_pred c--ccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 532 S--EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 532 s--~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+ .+... -....++-++-+.|+|||.++|.+
T Consensus 80 ~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 11111 235677888999999999999975
|
... |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.74 Score=47.28 Aligned_cols=135 Identities=18% Similarity=0.307 Sum_probs=79.1
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc---ccc---c-ccccccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR---GLI---G-TVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R---Gli---G-~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
.+|+|+.+|-|.++.+|... |-+ +|+=++. ++.+.+.-++ ++. - +-.|+-+++. +.+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~--~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDA--EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 46999999999999988643 222 3444442 2344333222 211 1 1234544443 4789999875433
Q ss_pred cccc------cC----CC------------ChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCccceeeccccc
Q 007165 532 SEIE------ER----GC------------SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPR 589 (615)
Q Consensus 532 s~~~------~~----~c------------~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~~~~~~~~~ 589 (615)
.... .. .. .+..++-++-++|+|||++++--...--+.+++++....+.. +...
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~-v~~~--- 261 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFAD-VETR--- 261 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCce-eEEe---
Confidence 2100 00 00 134567788899999999999655555667888888766652 1211
Q ss_pred cCcCCCCCceEEEEEe
Q 007165 590 IDALSSSEERVLIAKK 605 (615)
Q Consensus 590 ~~~~~~~~e~~l~~~k 605 (615)
. ...+.+++++++|
T Consensus 262 ~--d~~~~~r~~~~~~ 275 (275)
T PRK09328 262 K--DLAGRDRVVLGRR 275 (275)
T ss_pred c--CCCCCceEEEEEC
Confidence 1 1246889998865
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.17 Score=43.74 Aligned_cols=90 Identities=23% Similarity=0.328 Sum_probs=45.1
Q ss_pred eeccccchhHHhhhcCCCcEEEEeccCC-CCCchhH----Hhhcccc---cccccccccCCCCC-Cccceeccccccccc
Q 007165 464 MDMNSNLGGFAAALKDKDVWVMNVAPVR-MSARLKI----IYDRGLI---GTVHDWCESFSTYP-RTYDLLHAWKVFSEI 534 (615)
Q Consensus 464 mdm~a~~ggfaaal~~~~vwvmnvvp~~-~~~tL~~----iy~RGli---G~~hdwce~fstYp-rtyDl~Ha~~~fs~~ 534 (615)
||..+|-|.++..|...- --..++=+| +++-|-. +.+.+.- =+-.+--+.+...+ .+||+|.+.++|..+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 578889999988887552 222333333 2333321 2222211 01112223344444 599999999999977
Q ss_pred ccCCCChhhhhhhhcccccCCcEE
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFV 558 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~ 558 (615)
. ++..++-.+-+.|+|||.+
T Consensus 80 -~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -E---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S----HHHHHHHHTTT-TSS-EE
T ss_pred -h---hHHHHHHHHHHHcCCCCCC
Confidence 3 4889999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.19 Score=51.41 Aligned_cols=96 Identities=14% Similarity=0.228 Sum_probs=60.1
Q ss_pred eeeeeccccchhHHhhhcC---CCcEEEEeccCCC-CCchhHHhhc----cc---ccccccccccCCCCC-Cccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFSTYP-RTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~---~~vwvmnvvp~~~-~~tL~~iy~R----Gl---iG~~hdwce~fstYp-rtyDl~Ha~ 528 (615)
..|+|..+|-|..+.+|.. .|-| .|+=+|. ++-|...-+| |+ +-+.+ ..+.+.| ..||++-++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~---~d~~~~~~~~~D~vv~~ 132 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE---GDIRDIAIENASMVVLN 132 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEe---CChhhCCCCCCCEEehh
Confidence 3699999999999887754 3544 3444443 3444443222 22 22222 2222222 358988877
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
..+..+.. -....++-||-|.|+|||.+++.|.
T Consensus 133 ~~l~~l~~--~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEP--SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCH--HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 66664432 2357899999999999999999873
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.17 Score=53.12 Aligned_cols=102 Identities=23% Similarity=0.300 Sum_probs=60.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCC-C-CCCCCceEEEe-
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRL-P-YPSRSFELAHC- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~L-p-fpd~sFDlV~~- 285 (615)
+..+|||+++|.|.=+.++++. .+++.|++..=+.. ..+.++..|.. +.....|.... + .....||.|+.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~-l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKR-LKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHH-HHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHH-HHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 4467999999999877776642 45566555433221 12233344654 34444565443 1 23346999986
Q ss_pred ---ccc-ccccccc----------------hHHHHHHHHhcc----CCCeEEEEEc
Q 007165 286 ---SRC-RIDWLQR----------------DGILLLELDRLL----RPGGYFVYSS 317 (615)
Q Consensus 286 ---s~~-~l~~~~d----------------~~~~L~ei~RvL----kPGG~Lvis~ 317 (615)
+.. ++...++ ..++|..+.+.+ ||||+++.++
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 211 1111111 134889999999 9999999987
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.3 Score=48.33 Aligned_cols=91 Identities=14% Similarity=0.247 Sum_probs=59.5
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----C-CCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----G-IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g-~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
..+.|+|+|+|.++...+.. +|++++..| ...+.|.+. | .+..++++|+....| ..-|+|+|-..-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dP-----k~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDP-----KRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCc-----HHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 56899999999777655543 677775543 344555554 2 356788888888887 568999985411
Q ss_pred cccccc-hHHHHHHHHhccCCCeEEE
Q 007165 290 IDWLQR-DGILLLELDRLLRPGGYFV 314 (615)
Q Consensus 290 l~~~~d-~~~~L~ei~RvLkPGG~Lv 314 (615)
--.+.. .-.+++.+...||-.+.++
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCccc
Confidence 111112 2346777777888888877
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.29 E-value=2.8 Score=45.30 Aligned_cols=106 Identities=18% Similarity=0.070 Sum_probs=53.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHH----HHcCCC-cEEEEec--CCCCCCC-CCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFA----LERGIP-STLGVLG--TKRLPYP-SRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A----~erg~~-~~~~v~d--~~~Lpfp-d~sFDlV~~s 286 (615)
.+++|||+|.|.|.-...+.+.-..--+.+-.+.+++..+.. ..-+.. ..+...| ..+++++ ...|++|+..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 456799999999965554443210111111112333332221 111111 1111111 2234443 3568888765
Q ss_pred ccccccccc--hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 287 RCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 287 ~~~l~~~~d--~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.-.++--.. ....++.+..++.|||.|+|..+..
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 533332111 1237888899999999999998654
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.29 E-value=1.3 Score=48.35 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=66.5
Q ss_pred CeEEEECCCCchHHHHHh--cCC-----------------------------------------CccccCChhchhHHHH
Q 007165 217 RNVLDVGCGVASFGAYLL--SHD-----------------------------------------IIAMSLAPNDVHENQI 253 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~--~~~-----------------------------------------V~gvdis~~Dls~a~i 253 (615)
..++|-=||+|++....+ ..+ +.|+|+.+..+..+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak- 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK- 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH-
Confidence 579999999998876543 211 336666666554443
Q ss_pred HHHHHcCCC--cEEEEecCCCCCCCCCCceEEEeccc---ccccccch----HHHHHHHHhccCCCeEEEEEcCC
Q 007165 254 QFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRC---RIDWLQRD----GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 254 ~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~---~l~~~~d~----~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
..|++.|+. +.|.++|+..++-+-..+|+|+|+-- .+.-.... ..+...+.+.++--+.++|++..
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 445555665 88999999888744478999998631 01101111 23556777888888899998743
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.29 E-value=1.3 Score=47.97 Aligned_cols=120 Identities=21% Similarity=0.154 Sum_probs=63.3
Q ss_pred HHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccc---cCChhchhHHHHH---HHHHcCCC--cEEE
Q 007165 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAM---SLAPNDVHENQIQ---FALERGIP--STLG 266 (615)
Q Consensus 195 y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gv---dis~~Dls~a~i~---~A~erg~~--~~~~ 266 (615)
|......|++.....+. ++.+|||+.+..|+=+..|.++---.. -+...|.+..... ...++-.. ..+.
T Consensus 138 ~rqeavSmlPvL~L~v~---p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~ 214 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGVK---PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVT 214 (375)
T ss_pred hhhhhhhccchhhcccC---CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeee
Confidence 44455566664443333 446799999999988887775400000 1223344333322 22233221 2222
Q ss_pred EecCCCCC---------CCCCCceEEEec----c-ccccccc----------------c-hHHHHHHHHhccCCCeEEEE
Q 007165 267 VLGTKRLP---------YPSRSFELAHCS----R-CRIDWLQ----------------R-DGILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 267 v~d~~~Lp---------fpd~sFDlV~~s----~-~~l~~~~----------------d-~~~~L~ei~RvLkPGG~Lvi 315 (615)
..++...| .....||-|.|- . ..+...+ . .-.+|..-.++||+||.++.
T Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVY 294 (375)
T KOG2198|consen 215 NHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVY 294 (375)
T ss_pred cccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEE
Confidence 22222222 234569998871 1 0111111 1 12478889999999999999
Q ss_pred Ec
Q 007165 316 SS 317 (615)
Q Consensus 316 s~ 317 (615)
++
T Consensus 295 ST 296 (375)
T KOG2198|consen 295 ST 296 (375)
T ss_pred ec
Confidence 87
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.72 Score=44.97 Aligned_cols=129 Identities=16% Similarity=0.220 Sum_probs=69.1
Q ss_pred eeeeeccccchhHHhhhcCC-----CcEEEEeccCCCCCchhHHhhcccccccccccccC-------CCCCCccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESF-------STYPRTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-----~vwvmnvvp~~~~~tL~~iy~RGliG~~hdwce~f-------stYprtyDl~Ha~ 528 (615)
.+|+|+.+|-|+++.++... .++..=.-|.. . + .|+--+..|..+.. .+-+.++|++=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~--~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P--I-ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c--C-CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 47999999999998776432 25554333321 0 0 12222223544321 0113578887765
Q ss_pred cc------ccc-cccCCCChhhhhhhhcccccCCcEEEEE----cC-hhHHHHHHHHHhhcCccceeeccccccCcCCCC
Q 007165 529 KV------FSE-IEERGCSFEDLLIEMDRMLRPEGFVIIR----DK-SSIINYIRKFITALKWDGWLSEVEPRIDALSSS 596 (615)
Q Consensus 529 ~~------fs~-~~~~~c~~~~i~~EmdRilRp~g~~iir----d~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 596 (615)
+. .+. .....+.++.+|-++-|+|+|||.+++- +. .+++.++++. + |++.+..... ....+
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~---~-~~~~~~~~~~---~~~~~ 178 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL---F-EKVKVTKPQA---SRKRS 178 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh---h-ceEEEeCCCC---CCccc
Confidence 42 110 0001123578999999999999999993 21 2445444442 2 4443222111 12235
Q ss_pred CceEEEEE
Q 007165 597 EERVLIAK 604 (615)
Q Consensus 597 ~e~~l~~~ 604 (615)
.|+.+||.
T Consensus 179 ~~~~~~~~ 186 (188)
T TIGR00438 179 AEVYIVAK 186 (188)
T ss_pred ceEEEEEe
Confidence 78999985
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.87 E-value=1.2 Score=48.38 Aligned_cols=107 Identities=17% Similarity=0.056 Sum_probs=67.0
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc------------CCCcEEEEecCCCC-CCCCCCce
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKRL-PYPSRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er------------g~~~~~~v~d~~~L-pfpd~sFD 281 (615)
..++||-+|.|.|.-++.|.+.. ....+..+|+++.|+++++.. .+++.+...|+.++ .-..+.||
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 45789999999999999998752 123444456666677776522 12345555554332 22345899
Q ss_pred EEEecccccccccch-----HHHHHHHHhccCCCeEEEEEcCCCCCC
Q 007165 282 LAHCSRCRIDWLQRD-----GILLLELDRLLRPGGYFVYSSPEAYAH 323 (615)
Q Consensus 282 lV~~s~~~l~~~~d~-----~~~L~ei~RvLkPGG~Lvis~P~~~~~ 323 (615)
.|+.-. --.-.+.. .++..-+.|.|+++|.+++.....|..
T Consensus 368 ~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~t 413 (508)
T COG4262 368 VVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFT 413 (508)
T ss_pred EEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccC
Confidence 998532 01111111 236777889999999999987666543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.32 Score=49.70 Aligned_cols=116 Identities=19% Similarity=0.246 Sum_probs=64.7
Q ss_pred HhhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----ccc--cccc
Q 007165 437 IGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GLI--GTVH 509 (615)
Q Consensus 437 ~~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gli--G~~h 509 (615)
.+.|++.+... +. ...+. .|+|+.+|-|-++..|...-----.|+-+|- ++-|.+.-+| |+. =..+
T Consensus 32 ~~~wr~~~~~~---~~--~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~ 104 (233)
T PF01209_consen 32 DRRWRRKLIKL---LG--LRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQ 104 (233)
T ss_dssp -----SHHHHH---HT----S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE
T ss_pred HHHHHHHHHhc---cC--CCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEE
Confidence 47899877643 22 22222 7999999999998888653211225666664 4777776554 332 1122
Q ss_pred cccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 510 DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 510 dwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
-=.|..+---.|||.+=....+-.+ ++....|-||=|+|||||.++|=|-
T Consensus 105 ~da~~lp~~d~sfD~v~~~fglrn~----~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 105 GDAEDLPFPDNSFDAVTCSFGLRNF----PDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp -BTTB--S-TT-EEEEEEES-GGG-----SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCHHHhcCCCCceeEEEHHhhHHhh----CCHHHHHHHHHHHcCCCeEEEEeec
Confidence 2245544323899998765554422 4578899999999999999988653
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=89.75 E-value=1.1 Score=47.53 Aligned_cols=97 Identities=13% Similarity=0.224 Sum_probs=57.7
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC-----CcEEEEeccCCCCCchhHHhhc-ccccccccccccCCCCC---Ccccee
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCESFSTYP---RTYDLL 525 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~-----~vwvmnvvp~~~~~tL~~iy~R-GliG~~hdwce~fstYp---rtyDl~ 525 (615)
|..+. +|+|..|+-|+|+..|.+. .|+-+-+-|....+-|.+.-.| +++-+..|-+.+. .|+ -++|+|
T Consensus 130 IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVI 206 (293)
T ss_pred cCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEE
Confidence 45553 7999999999988777543 4666643332222344444333 4555566655431 122 356666
Q ss_pred cccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 007165 526 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 526 Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
|+++.+. =+...+++|+.|+|+|+|.++|
T Consensus 207 -----~~Dva~p-dq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 207 -----FADVAQP-DQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred -----EEeCCCc-chHHHHHHHHHHhccCCCEEEE
Confidence 4433211 1234566799999999999999
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.97 Score=46.90 Aligned_cols=101 Identities=17% Similarity=0.271 Sum_probs=59.8
Q ss_pred eeeeeeccccchhHHhhhcCC-C-c-EEEEeccCCC-CCchhHHhhccc-cccc-ccccc-cCCCCCCccceeccccccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDK-D-V-WVMNVAPVRM-SARLKIIYDRGL-IGTV-HDWCE-SFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~-~-v-wvmnvvp~~~-~~tL~~iy~RGl-iG~~-hdwce-~fstYprtyDl~Ha~~~fs 532 (615)
-.+|+|..+|-|.+++.|.+. + . . .+|+=+|- ++.+...-.|.- +... .|-.+ +|. ..+||+|.+ +|+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~-~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~--~~sfD~I~~--~~~ 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITT-MQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFA--DQSLDAIIR--IYA 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccC-CeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCc--CCceeEEEE--ecC
Confidence 356999999999999988642 1 1 1 24555553 466665544421 1111 12111 332 368999975 333
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEEcCh-hHHHHHHHHH
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFI 574 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iird~~-~~~~~~~~~~ 574 (615)
...+-|+.|+|+|||.+|+.... .-+.+++.++
T Consensus 161 ---------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 161 ---------PCKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred ---------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 12356899999999999987433 2344444443
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.62 E-value=11 Score=38.18 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=87.1
Q ss_pred ccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCC
Q 007165 187 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP 262 (615)
Q Consensus 187 ~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~ 262 (615)
.|.+...+....+..-+.. + +-.++.+||=+|+.+|....++++- .+.++++++.... ..+..|.+|. +
T Consensus 53 ~Wnp~RSKLaAaIl~Gl~~----~-pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r-eLl~~a~~R~-N 125 (231)
T COG1889 53 EWNPRRSKLAAAILKGLKN----F-PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR-ELLDVAEKRP-N 125 (231)
T ss_pred eeCcchhHHHHHHHcCccc----C-CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH-HHHHHHHhCC-C
Confidence 3455556666555544331 1 1234578999999999888888742 5788999987664 4557787764 2
Q ss_pred cEEEEecCCCCC----CCCCCceEEEecccccccccch-HHHHHHHHhccCCCeEEEEEcCCCC-CCChhHHHHHHHHHH
Q 007165 263 STLGVLGTKRLP----YPSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYD 336 (615)
Q Consensus 263 ~~~~v~d~~~Lp----fpd~sFDlV~~s~~~l~~~~d~-~~~L~ei~RvLkPGG~Lvis~P~~~-~~~~e~~~~w~~l~~ 336 (615)
+.-...|+. .| .-=...|+|++--+ .++. +-+..++..-||+||+++++....- .-..+..++++....
T Consensus 126 i~PIL~DA~-~P~~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~ 200 (231)
T COG1889 126 IIPILEDAR-KPEKYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVE 200 (231)
T ss_pred ceeeecccC-CcHHhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHH
Confidence 333344543 22 11245898885431 2344 4477899999999998888653211 112223345553333
Q ss_pred HHhhcceEEEE
Q 007165 337 LLKSMCWKIVS 347 (615)
Q Consensus 337 La~~l~W~l~~ 347 (615)
-++.-.++...
T Consensus 201 kL~~~~f~i~e 211 (231)
T COG1889 201 KLEEGGFEILE 211 (231)
T ss_pred HHHhcCceeeE
Confidence 34444455443
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.37 Score=54.12 Aligned_cols=54 Identities=28% Similarity=0.485 Sum_probs=41.9
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCC
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTK 271 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~ 271 (615)
..+||+-||||.++..++.. .|+|+++++.++..|. ..|+..|+ ++.|+++-++
T Consensus 385 k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~-~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE-KNAQINGISNATFIVGQAE 441 (534)
T ss_pred cEEEEEeecCCceehhhhccccceeeeecChhhcchhh-hcchhcCccceeeeecchh
Confidence 78999999999999999865 8999999888776665 44555565 5677777443
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.38 E-value=0.86 Score=49.20 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=62.1
Q ss_pred CCCCeEEEECCC-CchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 214 GNIRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 214 ~~~~~VLDIGCG-tG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
.++.+|+=+|+| .|..+.+++.+ .+..+...+.++...+.|++.|....+.-.|.....--.+.||+|+..-
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka--~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv----- 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKA--MGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV----- 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC-----
Confidence 345778888877 33666666653 2344444466777778899888765444323222221123499998443
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
. ...+....+.||+||.+++..-+
T Consensus 238 -~--~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 -G--PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -C--hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 44788889999999999998743
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=89.31 E-value=0.42 Score=48.46 Aligned_cols=100 Identities=18% Similarity=0.246 Sum_probs=68.1
Q ss_pred cccCCceeeeeeccccchhHHhhhcC-CC---cEEEEeccCCCCCchhHHhhc-ccccccccccccCCCCCCccceeccc
Q 007165 454 VAQKNTFRNVMDMNSNLGGFAAALKD-KD---VWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 454 ~~~~~~~Rnvmdm~a~~ggfaaal~~-~~---vwvmnvvp~~~~~tL~~iy~R-GliG~~hdwce~fstYprtyDl~Ha~ 528 (615)
...+..++.|+|...|.|.|++++.. .| +.|+ |-|..+..+-+. .+--+=| .-|.++|. ||++...
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~-----Dlp~v~~~~~~~~rv~~~~g---d~f~~~P~-~D~~~l~ 165 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVF-----DLPEVIEQAKEADRVEFVPG---DFFDPLPV-ADVYLLR 165 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE-----E-HHHHCCHHHTTTEEEEES----TTTCCSS-ESEEEEE
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCCcceee-----ccHhhhhccccccccccccc---cHHhhhcc-ccceeee
Confidence 56788999999999999999999962 34 3443 334344444331 1111222 23578888 9999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCC--cEEEEEcCh
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPE--GFVIIRDKS 564 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~--g~~iird~~ 564 (615)
+++-.+... +...||--+=+-|+|| |.++|-|..
T Consensus 166 ~vLh~~~d~--~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 166 HVLHDWSDE--DCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp SSGGGS-HH--HHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhhhcchH--HHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 998865543 4677888899999999 999998643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.27 E-value=0.34 Score=48.20 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=52.7
Q ss_pred eeeeeccccchhHHhhhcC-----CCcEEEEeccCCCCCchhHHhhcccc---cccc-cccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKD-----KDVWVMNVAPVRMSARLKIIYDRGLI---GTVH-DWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~-----~~vwvmnvvp~~~~~tL~~iy~RGli---G~~h-dwce~fstYprtyDl~Ha~~~f 531 (615)
..|+|+.+|.|.+++.|.. ..|.-+-+.|.-..-.-.-+...|+- -+.| |-.+.+.. ..+||.|.+++.+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc
Confidence 3699999999999877753 23454444443211011112233442 2222 44444433 3689999988765
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
..+ . =|+=|.|+|||.+++-
T Consensus 153 ~~~-------~---~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 STI-------P---SALVRQLKDGGVLVIP 172 (205)
T ss_pred chh-------h---HHHHHhcCcCcEEEEE
Confidence 422 2 2566899999999884
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.19 E-value=1.1 Score=44.66 Aligned_cols=103 Identities=14% Similarity=0.064 Sum_probs=54.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhch-------hHHHHHHHHHcCC-CcEEEEecCCCCC-------CC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDV-------HENQIQFALERGI-PSTLGVLGTKRLP-------YP 276 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dl-------s~a~i~~A~erg~-~~~~~v~d~~~Lp-------fp 276 (615)
+..+|+|+=-|.|.|++-+... .-....+.+.+. .+.+...+++... +.+..-.+.-.++ .+
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~ 127 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVP 127 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccc
Confidence 4578999999999999988754 111222333332 1122222222211 1111111111222 12
Q ss_pred CCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 277 d~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
..++|.++... .+| .....++..++++.|||||.+++.+..
T Consensus 128 ~~~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 128 TAQNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cchhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 33444444332 233 344577999999999999999997643
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=88.79 E-value=0.26 Score=44.68 Aligned_cols=38 Identities=21% Similarity=0.572 Sum_probs=28.2
Q ss_pred CceEEEeccccccccc----c--hHHHHHHHHhccCCCeEEEEEc
Q 007165 279 SFELAHCSRCRIDWLQ----R--DGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 279 sFDlV~~s~~~l~~~~----d--~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.||+|.|.. +.-|+. | ...+++.+.+.|+|||.|++.-
T Consensus 1 ~yDvilclS-VtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLS-VTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEE-eeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999876 555542 2 2469999999999999999954
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=88.69 E-value=1.3 Score=47.04 Aligned_cols=94 Identities=18% Similarity=0.320 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchH----HHHHhcCCCccccCChhchhHHHHHHHHHcCCC--cE
Q 007165 191 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASF----GAYLLSHDIIAMSLAPNDVHENQIQFALERGIP--ST 264 (615)
Q Consensus 191 ~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~----a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~--~~ 264 (615)
+...|+..+.+++.......+ ...++||||+|.... +..+.+=+++|.|+.+..+..|+....+..++. +.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~---~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIP---EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS------EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hhHHHHHHHHHHhhccccccc---cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 456799999999875443211 246899999998733 222222255666666655555543333331343 44
Q ss_pred EEEecCC-----CCCCCCCCceEEEecc
Q 007165 265 LGVLGTK-----RLPYPSRSFELAHCSR 287 (615)
Q Consensus 265 ~~v~d~~-----~Lpfpd~sFDlV~~s~ 287 (615)
+...... .+..++..||+.+|+-
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNP 185 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNP 185 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE--
T ss_pred EEEcCCccccchhhhcccceeeEEecCC
Confidence 4333211 1222346899999875
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.50 E-value=1.1 Score=46.84 Aligned_cols=54 Identities=19% Similarity=0.136 Sum_probs=34.6
Q ss_pred EEEEecCCCC--CCCCCCceEEEeccc-cc--c------------cccchHHHHHHHHhccCCCeEEEEEc
Q 007165 264 TLGVLGTKRL--PYPSRSFELAHCSRC-RI--D------------WLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 264 ~~~v~d~~~L--pfpd~sFDlV~~s~~-~l--~------------~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.+..+|.... .+++++||+|++.-- .. . |..-....+.++.|+|||||.+++..
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4555664442 356788999988421 00 0 11112468899999999999999864
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=88.38 E-value=0.58 Score=43.01 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=23.5
Q ss_pred eEEEECCCCchHHHHHhcC----CCccccCChhchh
Q 007165 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVH 249 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls 249 (615)
++||+|||.|.++..++.. ++.+++..+....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~ 36 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYE 36 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHH
Confidence 4899999999999888753 3666666555443
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=88.29 E-value=0.57 Score=48.37 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=32.8
Q ss_pred CCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 519 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 519 prtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
..+||+|+++.++... . +...++-|+=|+|||||.+++.|
T Consensus 144 ~~~fD~Vi~~~v~~~~-~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 144 DNSVDVIISNCVINLS-P---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CCceeEEEEcCcccCC-C---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 4699999998877632 2 36789999999999999999965
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=0.32 Score=56.55 Aligned_cols=101 Identities=15% Similarity=0.261 Sum_probs=60.8
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCCC-CchhHHhhc----cc-ccccccccccCCC-C-CCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR----GL-IGTVHDWCESFST-Y-PRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-~tL~~iy~R----Gl-iG~~hdwce~fst-Y-prtyDl~Ha~~~f 531 (615)
..|+|..+|.|.++.+|... |- .+|+-+|-. +.|...-.| |. +-+.+.=+..++. + |.+||++..+.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 57999999999998777532 21 244444432 334333222 11 1112222333332 1 5789999877654
Q ss_pred cccc------cC---CCChhhhhhhhcccccCCcEEEEEcC
Q 007165 532 SEIE------ER---GCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 532 s~~~------~~---~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
-.+. .+ .-.+..+|-|+-|+|+|||.+||.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3221 11 12467889999999999999999984
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.08 E-value=0.98 Score=45.38 Aligned_cols=117 Identities=16% Similarity=0.227 Sum_probs=67.1
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----cccc--cccccccccCCCCCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGLI--GTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGli--G~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
-.|+|+.+|.|.++..+..... -+|+=++- +..+...-. .|+- =+-.|+.+.+. ..+||+|.++--|..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 3699999999999888776432 13444442 344433222 2331 12236655443 368999998744331
Q ss_pred ccc-----------------CCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhhcCccc
Q 007165 534 IEE-----------------RGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDG 581 (615)
Q Consensus 534 ~~~-----------------~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~~~w~~ 581 (615)
... ....+.+++-++-|+|+|||.+++= .+..-+.++.+.+++-.|+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~ 179 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDA 179 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCe
Confidence 100 0112566778899999999999972 22223445555555555544
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=88.05 E-value=1.2 Score=45.25 Aligned_cols=136 Identities=15% Similarity=0.295 Sum_probs=67.9
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC----CcEEEEeccCCCCCchhHH----hhc-ccccccccccccC--CCCCCccc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK----DVWVMNVAPVRMSARLKII----YDR-GLIGTVHDWCESF--STYPRTYD 523 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~----~vwvmnvvp~~~~~tL~~i----y~R-GliG~~hdwce~f--stYprtyD 523 (615)
+..+. .|||..+|-|++...|.+. .|+-+-+-| .-|..+ -+| ++.-+..|=.++. ...+.++|
T Consensus 70 i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 70 IKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCC
Confidence 44443 5999999999999888653 355543333 222221 111 1222222322221 01134566
Q ss_pred eecccccccccccCCCChhhhhhhhcccccCCcEEEEE------c----ChhHHHHHHHHHhhcCccceeeccccccCcC
Q 007165 524 LLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR------D----KSSIINYIRKFITALKWDGWLSEVEPRIDAL 593 (615)
Q Consensus 524 l~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir------d----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 593 (615)
.| |+.+... =....++-|+-|+|+|||.++|. | .....++..+.+.+-..+. +...+ -.|.
T Consensus 144 ~i-----~~d~~~p-~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~-i~~~~--l~p~ 214 (226)
T PRK04266 144 VI-----YQDVAQP-NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEI-LEVVD--LEPY 214 (226)
T ss_pred EE-----EECCCCh-hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeE-EEEEc--CCCC
Confidence 64 3322110 01123466999999999999992 2 2233334445665544544 12222 2233
Q ss_pred CCCCceEEEEEec
Q 007165 594 SSSEERVLIAKKK 606 (615)
Q Consensus 594 ~~~~e~~l~~~k~ 606 (615)
. ..+-.+|++|+
T Consensus 215 ~-~~h~~~v~~~~ 226 (226)
T PRK04266 215 H-KDHAAVVARKK 226 (226)
T ss_pred c-CCeEEEEEEcC
Confidence 2 24566777664
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=87.98 E-value=1.7 Score=45.48 Aligned_cols=136 Identities=15% Similarity=0.264 Sum_probs=84.5
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc----cc---cc-ccccccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GL---IG-TVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R----Gl---iG-~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
..|+|+.+|.|.++.+|... |.+ +|+=++- +..|.+.-.. |+ += +-.||.+++.. -.||+|=++-=
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~--~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA--EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCC
Confidence 46999999999999998753 322 4555553 3455444332 33 11 23588887632 37999876521
Q ss_pred ccc------cc--cCCC-------------ChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHh-hcCccceeecccc
Q 007165 531 FSE------IE--ERGC-------------SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFIT-ALKWDGWLSEVEP 588 (615)
Q Consensus 531 fs~------~~--~~~c-------------~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~-~~~w~~~~~~~~~ 588 (615)
+.. +. .+.. .+..|+-+.-+.|+|||++++--...--+.+++++. ...|.. +.+.
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~-~~~~-- 268 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYD-VENG-- 268 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCce-eEEe--
Confidence 110 00 0000 245678889999999999999877667777888776 466753 1221
Q ss_pred ccCcCCCCCceEEEEEec
Q 007165 589 RIDALSSSEERVLIAKKK 606 (615)
Q Consensus 589 ~~~~~~~~~e~~l~~~k~ 606 (615)
.| ..+.++++++++.
T Consensus 269 ~D---~~g~~R~~~~~~~ 283 (284)
T TIGR00536 269 RD---LNGKERVVLGFYH 283 (284)
T ss_pred cC---CCCCceEEEEEec
Confidence 22 3568999998753
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=87.81 E-value=1.4 Score=44.20 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=67.8
Q ss_pred eeeeeccccchhHHhhhcCC-----CcEEEEeccCCCCCchhHHhhcccccccccccc---------cCCCCCCccceec
Q 007165 461 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCE---------SFSTYPRTYDLLH 526 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-----~vwvmnvvp~~~~~tL~~iy~RGliG~~hdwce---------~fstYprtyDl~H 526 (615)
..|+|..||-|+|+..|.+. .|-.+-.-|. +.+ .|..=+-.|..+ .|. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---~~~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---DPI-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---cCC-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 36999999999997655432 2322222221 111 122111122222 122 35799998
Q ss_pred ccccccccccC-------CCChhhhhhhhcccccCCcEEEEE-----cChhHHHHHHHHHhhcCccceeeccccccCcCC
Q 007165 527 AWKVFSEIEER-------GCSFEDLLIEMDRMLRPEGFVIIR-----DKSSIINYIRKFITALKWDGWLSEVEPRIDALS 594 (615)
Q Consensus 527 a~~~fs~~~~~-------~c~~~~i~~EmdRilRp~g~~iir-----d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 594 (615)
++......... -...+++|-|+=|+|+|||.+++- +..+++.++++.....+. .-+..+ -.
T Consensus 123 S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~------~Kp~ss-r~ 195 (209)
T PRK11188 123 SDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV------RKPDSS-RA 195 (209)
T ss_pred cCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE------ECCccc-cc
Confidence 76532210000 011367899999999999999994 334455555444433333 221221 22
Q ss_pred CCCceEEEEEe
Q 007165 595 SSEERVLIAKK 605 (615)
Q Consensus 595 ~~~e~~l~~~k 605 (615)
.+.|..+||..
T Consensus 196 ~s~e~~~~~~~ 206 (209)
T PRK11188 196 RSREVYIVATG 206 (209)
T ss_pred cCceeEEEeec
Confidence 46788888864
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.58 E-value=2.2 Score=47.07 Aligned_cols=105 Identities=20% Similarity=0.228 Sum_probs=60.1
Q ss_pred CCCCCeEEEECCCCchHHHHHh---c-C-CCccccCChhchhHHHHHHHHHcCCCcE-EEEecCCCCC---CCCCCceEE
Q 007165 213 GGNIRNVLDVGCGVASFGAYLL---S-H-DIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLP---YPSRSFELA 283 (615)
Q Consensus 213 ~~~~~~VLDIGCGtG~~a~~L~---~-~-~V~gvdis~~Dls~a~i~~A~erg~~~~-~~v~d~~~Lp---fpd~sFDlV 283 (615)
.+++.+|||+.+..|.=+.+++ + . -|.+.|....-+. ...+.+...|+... ....|...+| |+. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~-~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLK-SLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHH-HHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 3566899999999995444443 2 2 3344443332221 22233444566543 3444555544 454 89988
Q ss_pred Ee----ccccccc-----------------ccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 284 HC----SRCRIDW-----------------LQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 284 ~~----s~~~l~~-----------------~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.. +...+-+ ..-..++|..+..+++|||+|+.++=.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 73 3211111 111245888999999999999998743
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=87.51 E-value=0.71 Score=45.48 Aligned_cols=116 Identities=11% Similarity=0.176 Sum_probs=69.4
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhH----HhhcccccccccccccCC----CCCC-ccceecccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKI----IYDRGLIGTVHDWCESFS----TYPR-TYDLLHAWK 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~----iy~RGliG~~hdwce~fs----tYpr-tyDl~Ha~~ 529 (615)
+-|+|..+|-|.|+.+|... |-. ||+=++- +.-+-. +-..|+-.+..=-|.+.. .+|- ++|.++.+.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~--~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDK--NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCC--CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 46999999999999888744 321 4444443 222222 223344222111122211 1343 888887652
Q ss_pred ccccc------ccCCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhhcC-cc
Q 007165 530 VFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALK-WD 580 (615)
Q Consensus 530 ~fs~~------~~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~~~-w~ 580 (615)
+.- .++|.....++-|+-|+|+|||.+++. |..+..+.+.+.+...- |+
T Consensus 96 --pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~ 152 (194)
T TIGR00091 96 --PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFE 152 (194)
T ss_pred --CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeE
Confidence 211 134566788999999999999999987 66666776666665533 44
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=87.39 E-value=1.1 Score=42.50 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=43.8
Q ss_pred CcEEEEecCCCCC-C-CCCCceEEEecccccccccc--------h---HHHHHHHHhccCCCeEEEEEcCCCCCCChhHH
Q 007165 262 PSTLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWLQR--------D---GILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328 (615)
Q Consensus 262 ~~~~~v~d~~~Lp-f-pd~sFDlV~~s~~~l~~~~d--------~---~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~ 328 (615)
++.+...+=+.+. + +++++|+|+.+ |.|+|. + -.++..+.++|+|||.++++.-.- -+...
T Consensus 27 ~v~li~~sHe~l~~~i~~~~v~~~iFN---LGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~G---H~gG~ 100 (140)
T PF06962_consen 27 RVTLILDSHENLDEYIPEGPVDAAIFN---LGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPG---HPGGK 100 (140)
T ss_dssp GEEEEES-GGGGGGT--S--EEEEEEE---ESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--S---TCHHH
T ss_pred cEEEEECCHHHHHhhCccCCcCEEEEE---CCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCC---CCCCH
Confidence 3666665544443 2 33589999854 445542 1 248899999999999999987332 23334
Q ss_pred HHHHHHHHHHhhc
Q 007165 329 RIWNAMYDLLKSM 341 (615)
Q Consensus 329 ~~w~~l~~La~~l 341 (615)
+..+.+..+++.+
T Consensus 101 eE~~av~~~~~~L 113 (140)
T PF06962_consen 101 EESEAVEEFLASL 113 (140)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhC
Confidence 4556667777664
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=86.82 E-value=0.67 Score=46.08 Aligned_cols=96 Identities=22% Similarity=0.305 Sum_probs=56.1
Q ss_pred eeeeeccccchhHHhhhcCC-C-cEEEEeccCCC-CCchhHHhhc----cc---ccccccccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~-vwvmnvvp~~~-~~tL~~iy~R----Gl---iG~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
..|+|+.+|-|.++..+... + .. +|+-++- ++.+...-++ |+ +-+.+.=.+.++.=+.+||+|.++..
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTG--EVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 35999999999998776432 1 11 2333332 2222222221 11 11222111122222468999998766
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+- ...+...+|-++-++|+|||.+|+-|
T Consensus 131 l~----~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 LR----NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cc----cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 54 23468889999999999999999854
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.32 E-value=1.3 Score=44.81 Aligned_cols=106 Identities=15% Similarity=0.208 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcccccccccccccCC
Q 007165 438 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFS 516 (615)
Q Consensus 438 ~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGliG~~hdwce~fs 516 (615)
..|++.+-...... +.. -..|+|..+|-|-++..|.+.- --+|+=+|- ++-|.+--+++ ...+.-.|.++
T Consensus 35 ~~wr~~~~~~l~~~---~~~--~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp 105 (226)
T PRK05785 35 VRWRAELVKTILKY---CGR--PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEALP 105 (226)
T ss_pred HHHHHHHHHHHHHh---cCC--CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhCC
Confidence 56877654321111 112 2579999999999998887652 126666764 35555544442 22334445544
Q ss_pred CCCCccceecccccccccccCCCChhhhhhhhcccccCCc
Q 007165 517 TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEG 556 (615)
Q Consensus 517 tYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g 556 (615)
-=..+||++-+...+-. --+.+..+-||-|+|||.+
T Consensus 106 ~~d~sfD~v~~~~~l~~----~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 FRDKSFDVVMSSFALHA----SDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCEEEEEecChhhc----cCCHHHHHHHHHHHhcCce
Confidence 33489999999775542 2358899999999999953
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=86.09 E-value=0.65 Score=44.89 Aligned_cols=142 Identities=18% Similarity=0.257 Sum_probs=66.7
Q ss_pred ccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-----CCchhHHhhcccc---cccccccccCCCCCCccceec
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-----SARLKIIYDRGLI---GTVHDWCESFSTYPRTYDLLH 526 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-----~~tL~~iy~RGli---G~~hdwce~fstYprtyDl~H 526 (615)
+..+.-.+|+|..|.=|||..++.........|+-+|- ..-...| +|=| .+..+=.+.++.=.+.+||+-
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 34557799999999999999999876522233333331 1111111 2211 001111122221126899999
Q ss_pred cccccccccc----CCCChhhhhhh---hcccccCCcEEEEE-----cChhHHHHHHHHHhhcCccceeeccccccCcCC
Q 007165 527 AWKVFSEIEE----RGCSFEDLLIE---MDRMLRPEGFVIIR-----DKSSIINYIRKFITALKWDGWLSEVEPRIDALS 594 (615)
Q Consensus 527 a~~~fs~~~~----~~c~~~~i~~E---mdRilRp~g~~iir-----d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 594 (615)
+|+-+..... .-=++.-++-+ +-..|+|||.+|+. +..+++..++..-...++- .+... -.
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~------Kp~~s-r~ 169 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV------KPPSS-RS 169 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE------E-TTS-BT
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE------ECcCC-CC
Confidence 9995441100 00011111112 23559999988873 3346666666644444332 22211 12
Q ss_pred CCCceEEEEEe
Q 007165 595 SSEERVLIAKK 605 (615)
Q Consensus 595 ~~~e~~l~~~k 605 (615)
.+.|.-|||.+
T Consensus 170 ~s~E~Ylv~~~ 180 (181)
T PF01728_consen 170 ESSEEYLVCRG 180 (181)
T ss_dssp TCBEEEEESEE
T ss_pred CccEEEEEEcC
Confidence 45788888864
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.06 E-value=0.57 Score=46.93 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=49.6
Q ss_pred eeeeeccccchhHHhhhcCC-----CcEEEEeccCCCCCchhHHh----hcccccccccccccCCCCC--Cccceecccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIY----DRGLIGTVHDWCESFSTYP--RTYDLLHAWK 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-----~vwvmnvvp~~~~~tL~~iy----~RGliG~~hdwce~fstYp--rtyDl~Ha~~ 529 (615)
..|+|+.+|.|.+++.|... .|.-+-+.|.- +.+.- .-|+-.+---...++.++| ..||+|+..+
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~----~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPEL----AEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHH----HHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 47999999999999877532 45544443322 11111 1122111111223333443 6899998766
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 530 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 530 ~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.+. ++.-++-+.|+|||.+++-
T Consensus 154 ~~~----------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGP----------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred Ccc----------cchHHHHHhhCCCcEEEEE
Confidence 443 2333555689999999884
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=85.70 E-value=0.58 Score=46.75 Aligned_cols=90 Identities=17% Similarity=0.189 Sum_probs=50.7
Q ss_pred eeeeeccccchhHHhhhcCC--C---cEEEEeccCCCCCchhHHhhccc--cc-ccccccccCCCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK--D---VWVMNVAPVRMSARLKIIYDRGL--IG-TVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~---vwvmnvvp~~~~~tL~~iy~RGl--iG-~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
..|+|+.+|.|.+++.|... + |.-.-.-|.-....-.-+-+.|+ += +..|..+.+.. ...||+|+.++...
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVTAAGP 157 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEcCCcc
Confidence 36999999999999988643 2 43333222211111111222343 11 22344443333 25899999776433
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.+.-++=+.|+|||.+|+-
T Consensus 158 ----------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 158 ----------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred ----------cccHHHHHhcCcCcEEEEE
Confidence 2333456789999999883
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=85.64 E-value=0.68 Score=44.24 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=36.6
Q ss_pred cccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 512 CESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 512 ce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
++.++.-+.+||++=+...+..+ -+....|-||-|+|+|||.++|-|-.
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~----~d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNV----VDRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcC----CCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 45555445799999776555433 24788999999999999999988654
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.02 E-value=5 Score=40.01 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=51.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEe-cCCC--------CCCCCCCc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVL-GTKR--------LPYPSRSF 280 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~-d~~~--------Lpfpd~sF 280 (615)
+..+|||+||..|+++.-..++ .|.|+|+-....- .|. .+..+ |..+ -.+|....
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~---------~Ga--~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPP---------EGA--TIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCC---------CCc--ccccccccCCHHHHHHHHHhCCCCcc
Confidence 4578999999999998876644 3555655332211 111 11111 2111 01356788
Q ss_pred eEEEeccccccc----ccch-------HHHHHHHHhccCCCeEEEEEcCC
Q 007165 281 ELAHCSRCRIDW----LQRD-------GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 281 DlV~~s~~~l~~----~~d~-------~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|+|++-. +-.- +.|- ..++.-....++|+|.|+.-...
T Consensus 138 dvVlSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 138 DVVLSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred cEEEecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 9998532 1111 0111 12444555678899999987643
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=85.00 E-value=0.62 Score=45.14 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=33.1
Q ss_pred CCceEEEeccccccccc--------ch---HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 278 RSFELAHCSRCRIDWLQ--------RD---GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 278 ~sFDlV~~s~~~l~~~~--------d~---~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++||.+.|.. +++|.. |+ .+.+.++.++|||||.|+++.|--
T Consensus 62 ~~fD~~as~~-siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 62 GSFDFAASFS-SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred ccchhhheec-hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 7799998766 576642 22 458999999999999999999854
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=84.75 E-value=0.94 Score=49.00 Aligned_cols=115 Identities=12% Similarity=0.035 Sum_probs=70.9
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhccc---ccccccccccCCCCCCccceecccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL---IGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 535 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~RGl---iG~~hdwce~fstYprtyDl~Ha~~~fs~~~ 535 (615)
..|+|+.+|-|.++.+|.+. +- -+|+=+|. ++.|...-++.- +-+.+.-.|.++--..+||++-+.+.+..+.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 46999999999988777532 21 13333342 344444433310 1222322333333347899998887766332
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEEcCh-----------------hHHHHHHHHHhhcCccc
Q 007165 536 ERGCSFEDLLIEMDRMLRPEGFVIIRDKS-----------------SIINYIRKFITALKWDG 581 (615)
Q Consensus 536 ~~~c~~~~i~~EmdRilRp~g~~iird~~-----------------~~~~~~~~~~~~~~w~~ 581 (615)
+...++-|+-|+|+|||.++|-+.. ...+++.+++++..++.
T Consensus 193 ----d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 193 ----DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeE
Confidence 3567899999999999999875421 12466777777777764
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=84.70 E-value=0.97 Score=47.62 Aligned_cols=104 Identities=13% Similarity=0.295 Sum_probs=63.6
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCCCchhHH----hhcccccccccccc-cC-CCCCCccceecc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKII----YDRGLIGTVHDWCE-SF-STYPRTYDLLHA 527 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~~tL~~i----y~RGliG~~hdwce-~f-stYprtyDl~Ha 527 (615)
++....+.|+|+.+|.|.++.++.+. |-. +|+-.|-|..+.++ -+.|+-+-++--+- .| ..+| .+|++-.
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~ 221 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLF 221 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEe
Confidence 34456679999999999999888644 432 34444444444443 33465432222222 22 2455 4798765
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 528 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 528 ~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
.+++-..... ....|+-++-|.|+|||.++|-|.
T Consensus 222 ~~~lh~~~~~--~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 222 CRILYSANEQ--LSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EhhhhcCChH--HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 5554322111 235688899999999999999863
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.38 E-value=1.2 Score=47.35 Aligned_cols=112 Identities=18% Similarity=0.298 Sum_probs=68.3
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHh----hccc---cccc-ccccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY----DRGL---IGTV-HDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy----~RGl---iG~~-hdwce~fstYprtyDl~Ha~~~ 530 (615)
.+|+|+.+|.|.++.+|... |. .+|+-++- +..|.+.- ..|+ |-++ -|+-+.++ +.+||+|-++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 47999999999999998743 43 34566664 35555432 2344 2223 25555443 358999998632
Q ss_pred ccc------cc--------------cCCC-ChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhc
Q 007165 531 FSE------IE--------------ERGC-SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITAL 577 (615)
Q Consensus 531 fs~------~~--------------~~~c-~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~ 577 (615)
+.. +. .++. -...|+-+.-+.|+|||.+++--..+ ..+++++....
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 210 00 0000 12577888999999999999854333 44577776643
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.79 E-value=3 Score=42.76 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=56.1
Q ss_pred CCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc-----CCC-
Q 007165 189 HDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----GIP- 262 (615)
Q Consensus 189 ~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er-----g~~- 262 (615)
-++...|+..++++|....+.+. ++..++||||.|.-- .-.|.+.+-.+.++++.|++...++.|+.. +..
T Consensus 54 vPgRAdYih~laDLL~s~~g~~~--~~~i~~LDIGvGAnC-IYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~ 130 (292)
T COG3129 54 VPGRADYIHHLADLLASTSGQIP--GKNIRILDIGVGANC-IYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLER 130 (292)
T ss_pred CCChhHHHHHHHHHHHhcCCCCC--cCceEEEeeccCccc-ccccccceeecceeecCccCHHHHHHHHHHHHcCcchhh
Confidence 35678899999999987766555 345689999877542 223444444455555555554444443321 222
Q ss_pred -cEEEEecCCC--CC---CCCCCceEEEecccccc
Q 007165 263 -STLGVLGTKR--LP---YPSRSFELAHCSRCRID 291 (615)
Q Consensus 263 -~~~~v~d~~~--Lp---fpd~sFDlV~~s~~~l~ 291 (615)
+.+....-.+ ++ -..+.||++.|+-- +|
T Consensus 131 ~I~lr~qk~~~~if~giig~nE~yd~tlCNPP-Fh 164 (292)
T COG3129 131 AIRLRRQKDSDAIFNGIIGKNERYDATLCNPP-FH 164 (292)
T ss_pred heeEEeccCccccccccccccceeeeEecCCC-cc
Confidence 2222221111 11 12578999999873 44
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=83.72 E-value=1.4 Score=45.34 Aligned_cols=120 Identities=15% Similarity=0.157 Sum_probs=72.5
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhh----cccccccccccccCCC-CCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGLIGTVHDWCESFST-YPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~----RGliG~~hdwce~fst-YprtyDl~Ha~~~fs~ 533 (615)
.+|+|+.+|.|.++-+|... +- .+|+=++. +..+...-+ -|+--+-.|+.+.++. ....||+|=++=-|..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 36999999999999887632 32 13333442 234333221 1221122355544321 2346999877644321
Q ss_pred c------c------cCCCC----------hhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCccce
Q 007165 534 I------E------ERGCS----------FEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGW 582 (615)
Q Consensus 534 ~------~------~~~c~----------~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~~ 582 (615)
. . ..+.. +.+|+-...++|+|||.+++-=..+-..+|..++....|+..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIAR 236 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCce
Confidence 0 0 00111 347777888999999999987666667889999998888874
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=83.16 E-value=5.3 Score=41.49 Aligned_cols=138 Identities=11% Similarity=0.137 Sum_probs=73.7
Q ss_pred CceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc-ccc------ccc-ccccccCCCCCCccceecc
Q 007165 458 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR-GLI------GTV-HDWCESFSTYPRTYDLLHA 527 (615)
Q Consensus 458 ~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R-Gli------G~~-hdwce~fstYprtyDl~Ha 527 (615)
..-++|+|+.+|-|.++..|... |. +.|+=++- |..+.+.-+. ++- -+. -|-=+-+.+.|.+||+|=.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 45678999999999999877533 31 22333332 3444443332 111 111 1211223445778999965
Q ss_pred cccccccc-cCCCChhhhhhhhcccccCCcEEEE---EcChhHHHHHHHHHhhcCccceeeccccccCcCCCCCceEEEE
Q 007165 528 WKVFSEIE-ERGCSFEDLLIEMDRMLRPEGFVII---RDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIA 603 (615)
Q Consensus 528 ~~~fs~~~-~~~c~~~~i~~EmdRilRp~g~~ii---rd~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~l~~ 603 (615)
+. |.... .......+++-++=++|+|||.++| ..+...-..++.+...+.-.+ ..+..+ .+.+.|+++
T Consensus 143 D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~--~~~~~~-----~~~N~v~~a 214 (262)
T PRK04457 143 DG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRV--LELPAE-----SHGNVAVFA 214 (262)
T ss_pred eC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcE--EEEecC-----CCccEEEEE
Confidence 52 43211 1112346888999999999999998 233333333444433333222 122111 223578888
Q ss_pred Ee
Q 007165 604 KK 605 (615)
Q Consensus 604 ~k 605 (615)
.|
T Consensus 215 ~~ 216 (262)
T PRK04457 215 FK 216 (262)
T ss_pred EC
Confidence 77
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=82.83 E-value=10 Score=36.83 Aligned_cols=116 Identities=19% Similarity=0.270 Sum_probs=67.8
Q ss_pred ECCCCchHHHHHhcC-----CCccccCChhch-------hHHHHHHHHHcCCCcEEEEecCCCCC----CCCCCceEEEe
Q 007165 222 VGCGVASFGAYLLSH-----DIIAMSLAPNDV-------HENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHC 285 (615)
Q Consensus 222 IGCGtG~~a~~L~~~-----~V~gvdis~~Dl-------s~a~i~~A~erg~~~~~~v~d~~~Lp----fpd~sFDlV~~ 285 (615)
||=|.=+|+..|+.. ++++.++...+. ....++..++.|..+.+. .|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 555666788877754 344444332221 112223334556655544 4555554 35688999985
Q ss_pred ccccccccc------c---------hHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 286 SRCRIDWLQ------R---------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 286 s~~~l~~~~------d---------~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
++ +|.. . ...++..+.++|+++|.+.++.-.... ...|+ ++.+++..++.+..
T Consensus 82 NF---PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p-----y~~W~-i~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 82 NF---PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP-----YDSWN-IEELAAEAGLVLVR 149 (166)
T ss_pred eC---CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC-----Ccccc-HHHHHHhcCCEEEE
Confidence 53 3433 0 134888999999999999998744311 12355 56888887776654
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=81.85 E-value=1.4 Score=41.34 Aligned_cols=96 Identities=19% Similarity=0.355 Sum_probs=60.3
Q ss_pred eeeeeccccchhHHhhhcC---CCcEEEEeccCCC-CCchhHHhh----cccc--ccc-ccccccCCC-CCCccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLKIIYD----RGLI--GTV-HDWCESFST-YPRTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~---~~vwvmnvvp~~~-~~tL~~iy~----RGli--G~~-hdwce~fst-YprtyDl~Ha~ 528 (615)
-+|+|+.+|.|-+.-.|.+ ...=|+.| |- ++-+...-. .|+- =.+ .|.=+ ++. |+..||+|.++
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gv---D~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGV---DISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEE---ESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEE---ECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 3699999999999888873 12223332 32 222222222 2431 111 12212 221 45889999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
++|... .+...++-+|=|.|+|+|.+|+.+-.
T Consensus 81 ~~l~~~----~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF----PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT----SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc----cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 988522 35778899999999999999999877
|
... |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.82 E-value=6.4 Score=40.79 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=29.8
Q ss_pred ceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 280 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 280 FDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
||+|+++.+ +......+.++.-+...|..+|.+++..+
T Consensus 163 ~DlilasDv-vy~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 163 FDLILASDV-VYEEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred ccEEEEeee-eecCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 999999996 44455667788889999999996666654
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=80.34 E-value=6.2 Score=42.81 Aligned_cols=101 Identities=14% Similarity=0.019 Sum_probs=58.5
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEecCCC-C-----CC-CCCCceEEEe
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-----PY-PSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d~~~-L-----pf-pd~sFDlV~~ 285 (615)
+..+||.+|||. |..+..+++.. +. .+...+.++...+.+++.+. ..+......+ + .+ ....+|+|+-
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~--g~~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLL--GAERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 346799999987 77777776541 22 23333455666777777631 2222111110 1 11 2246998875
Q ss_pred cccc--------------cccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 286 SRCR--------------IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 286 s~~~--------------l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.-.. ++-..+....+.++.+.|+|||.+++...
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 3210 01113445688999999999999998753
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 615 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-08 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 7e-08 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 2e-07 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 2e-07 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 2e-07 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 3e-07 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 4e-07 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 5e-07 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 7e-07 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 1e-06 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 1e-06 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 2e-06 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 2e-06 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 2e-06 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 3e-06 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 5e-06 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 5e-06 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 6e-06 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 7e-06 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 8e-06 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 1e-05 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 1e-05 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 1e-05 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 2e-05 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 2e-05 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 4e-05 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 4e-05 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 2e-04 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 3e-04 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 4e-04 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 6e-04 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 6e-04 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 7e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 5e-08
Identities = 80/573 (13%), Positives = 151/573 (26%), Gaps = 183/573 (31%)
Query: 61 FGRNRDFDDLFEDQE---LNPEVPKSI---PICDMRYSELIPCLDR---NLIYQL---KL 108
F N D D+ +D L+ E I L L ++ + L
Sbjct: 29 FVDNFDCKDV-QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 109 KPNLS-LMEHYERHCPPP-----------ERRYNCLVPPPKGYKIPVRWPASRDEVWKAN 156
+ N LM + P +R YN K Y + R K
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVS-R----LQPYLKL- 140
Query: 157 IPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNI 216
L E + + ++++G G+ K +AL L + +
Sbjct: 141 --RQALLELRPAK-NVLIDGVL------------GSGKTWVALDVCLSYKVQCKMDFK-- 183
Query: 217 RNVLDVGCGV--ASFGAYLLSHDIIAM------SLAPNDVHENQIQFALERGIPSTLGVL 268
+ + ++ M + PN + ++ I S L
Sbjct: 184 ---------IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 269 GTKRL----PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 324
+RL PY C LL L +
Sbjct: 235 --RRLLKSKPYE----------NC-----------LLVLL-------------------N 252
Query: 325 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 384
+N + WNA +L C +++ + + V + + ++ L PD
Sbjct: 253 VQNAKAWNAF-NL---SCKILLTTRFKQVTDFLSAATTTHISLDH-HSMTL-----TPDE 302
Query: 385 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRV 444
++L K + L P + PR + + E + + W
Sbjct: 303 VKSLL---------LKYLDCRPQDL---PREVLTTNPRR--LSIIAESIRDGLATW---- 344
Query: 445 VDYWKQMKTVAQKNTFR---NVMDMNSNLGGFAA-ALKDKDVWVMNVAPVRMSARLKII- 499
D WK + NV++ F ++ + P + L +I
Sbjct: 345 -DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI----P---TILLSLIW 396
Query: 500 ---------------YDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDL 544
+ L+ ES + P Y L ++E +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLV--EKQPKESTISIPSIYLELKV-----KLENEY-ALHRS 448
Query: 545 LIEMDRMLR---PEGFVIIRDKSSIINYIRKFI 574
+++ + + + + Y I
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLD----QYFYSHI 477
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 7e-08
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 20/129 (15%)
Query: 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVL--GTK 271
++D+GCG F + H ++ + D+ E + A G + +
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGASYVLGL-----DLSEKMLARARAAGPDTGITYERADLD 99
Query: 272 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS---------SPEAYA 322
+L P SF+LA+ S + +++ L + + L PGG+FV+S + +A
Sbjct: 100 KLHLPQDSFDLAYSSLA-LHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWA 158
Query: 323 HDPENRRIW 331
D E RR W
Sbjct: 159 IDAEGRRTW 167
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 12/120 (10%)
Query: 218 NVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLG-VLG-TKRL 273
VLDVGCG L + + + D+ E IQ ERG L + G L
Sbjct: 56 EVLDVGCGDGYGTYKLSRTGYKAVGV-----DISEVMIQKGKERGEGPDLSFIKGDLSSL 110
Query: 274 PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS--SPEAYAHDPENRRIW 331
P+ + FE ++W + L E+ R+L+ GY + P A + R++
Sbjct: 111 PFENEQFEAIMAINS-LEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLY 169
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 30/157 (19%)
Query: 198 ALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL---LSHDIIAMSLAPNDVHENQIQ 254
A++ + + D + D+GCG +L + I + D+ + I+
Sbjct: 37 AVSFINELTDDA--------KIADIGCGTGGQTLFLADYVKGQITGI-----DLFPDFIE 83
Query: 255 FALERGIPSTLGVLGT------KRLPYPSRSFEL--AHCSRCRIDWLQRDGILLLELDRL 306
E + + LP+ + +L + + I + E +
Sbjct: 84 IFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIG----FERGMNEWSKY 139
Query: 307 LRPGGYFVYSSPEAYAHDP--ENRRIWNAMYDLLKSM 341
L+ GG+ S + + E W Y + +
Sbjct: 140 LKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVI 176
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 2e-07
Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 15/152 (9%)
Query: 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVH 249
+ +Y + + + G VLD+ CGV F L +++ + D+
Sbjct: 18 SQEYRSRIETLEPLLMKYMKKRGK---VLDLACGVGGFSFLLEDYGFEVVGV-----DIS 69
Query: 250 ENQIQFALERGIPSTLGVLGTK----RLPYPSRSFELAHCSRCRIDWLQRD-GILLLELD 304
E+ I+ A E V +L + ++F+ + + + + E+
Sbjct: 70 EDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVR 129
Query: 305 RLLRPGGYFVYSSPEAYAHDPENRRIWNAMYD 336
R+L+P G F+ + P +
Sbjct: 130 RVLKPSGKFIMYFTDLRELLPRLKESLVVGQK 161
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 3e-07
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 11/105 (10%)
Query: 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPS--TLGVLGTK 271
+ VLD+GCG Y H ++ + D+ E + A + +
Sbjct: 46 KTVLDLGCGFGWHCIYAAEHGAKKVLGI-----DLSERMLTEAKRKTTSPVVCYEQKAIE 100
Query: 272 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316
+ ++ + S + ++ + ++ L+ G F++S
Sbjct: 101 DIAIEPDAYNVVLSSLA-LHYIASFDDICKKVYINLKSSGSFIFS 144
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 4e-07
Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 34/175 (19%)
Query: 186 THFHDGADKY--------ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL---L 234
F ++ + AL+ + + D+GCG L +
Sbjct: 17 CDFFSNMERQGPGSPEVTLKALSFIDNLTEKS--------LIADIGCGTGGQTMVLAGHV 68
Query: 235 SHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTK--RLPYPSRSFELAHCSRC 288
+ + + D I G+ + + + LP+ + +L S
Sbjct: 69 TGQVTGL-----DFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIW-SEG 122
Query: 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP--ENRRIWNAMYDLLKSM 341
I + L E + L+ GGY S + + E W Y + ++
Sbjct: 123 AI-YNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTI 176
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 5e-07
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 10/121 (8%)
Query: 219 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 276
+LDVG G + +L S H I + + ++ A + T L
Sbjct: 45 ILDVGSGTGRWTGHLASLGHQIEGL-----EPATRLVELARQTHPSVTFHHGTITDLSDS 99
Query: 277 SRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAM 334
+ + + + + L+ L + GG + S + +P + A
Sbjct: 100 PKRWAGLLAWYS-LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAY 158
Query: 335 Y 335
Sbjct: 159 R 159
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 7e-07
Identities = 29/153 (18%), Positives = 47/153 (30%), Gaps = 27/153 (17%)
Query: 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPND 247
D + L L+R+L P + VL+ GCG A A D
Sbjct: 33 DPELTFDLWLSRLLT-PQTR---------VLEAGCGHGPDAARFGPQAARWAAY-----D 77
Query: 248 VHENQIQFALERGIPSTLGVLGTK-RLPYPSRS-FELAHCSRCRIDWLQRDGILLLELDR 305
++ A + + K LP + F L R + L
Sbjct: 78 FSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVIL-------RLPE 130
Query: 306 LLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 338
L P +F+Y P + R+ +D++
Sbjct: 131 LAAPDAHFLYVGPRLNVPEVP-ERLAAVGWDIV 162
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 27/174 (15%)
Query: 186 THFHDGADKYIL-ALARMLKFPSDKLNNGGNIR---NVLDVGCGVASFGAYLL----SHD 237
H + + L A L+ L++ VL+ GCG+ + L +
Sbjct: 7 VHGYSEREALRLSEQAETLE---KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAE 63
Query: 238 IIAMSLAPNDVHENQIQFALER----GIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDW 292
I ++ D+ ++ A E GI + + LP+ SF+ ++
Sbjct: 64 ITSI-----DISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV-LEH 117
Query: 293 LQRDGILLLELDRLLRPGGYFV-----YSSPEAYAHDPENRRIWNAMYDLLKSM 341
LQ L L ++L+PGG + S + + WN + + M
Sbjct: 118 LQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYM 171
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-06
Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 29/185 (15%)
Query: 167 SDQHWMVVNGEKINF-----PGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLD 221
+ + GE ++F G D D+ + +L S VLD
Sbjct: 16 FTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGD--------RVLD 67
Query: 222 VGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLG-----VLGTKR- 272
VGCG+ L + + + + Q+ A R + L
Sbjct: 68 VGCGIGKPAVRLATARDVRVTGI-----SISRPQVNQANARATAAGLANRVTFSYADAMD 122
Query: 273 LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP-EAYAHDPENRRIW 331
LP+ SF+ R L E+ R+LRPGG + + +
Sbjct: 123 LPFEDASFDAVWALESLHHMPDRGR-ALREMARVLRPGGTVAIADFVLLAPVEGAKKEAV 181
Query: 332 NAMYD 336
+A
Sbjct: 182 DAFRA 186
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 9/113 (7%)
Query: 219 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 276
+LD GCG G YL HD++ D+ I +A + + V
Sbjct: 50 ILDAGCGQGRIGGYLSKQGHDVLGT-----DLDPILIDYAKQDFPEARWVVGDLSVDQIS 104
Query: 277 SRSFELAHCSRCRIDWLQRDGIL--LLELDRLLRPGGYFVYSSPEAYAHDPEN 327
F+L + + +L DG L + R L G V +
Sbjct: 105 ETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGD 157
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHE 250
K I+ ++ +F + + VLD G G + + + ++ +
Sbjct: 3 KTIIRQPQLYRFLKYCNESNLDKT-VLDCGAGGDLPPLSIFVEDGYKTYGI-----EISD 56
Query: 251 NQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELD 304
Q++ A + ++LP+ S + I ++++ + + E+
Sbjct: 57 LQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGT-IFHMRKNDVKEAIDEIK 115
Query: 305 RLLRPGGYFVYS 316
R+L+PGG +
Sbjct: 116 RVLKPGGLACIN 127
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 30/176 (17%)
Query: 184 GGTHFHDG-------ADKYILALARMLKFPSDKLNNGGNIR---NVLDVGCGVASFGAYL 233
GG H G D+ A R ++ + +L G ++ LD+G G +L
Sbjct: 41 GGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFL 100
Query: 234 LSH---DIIAMSLAPNDVHENQIQFALERGIPSTLG-----VLGTKR-LPYPSRSFEL-- 282
+ I +++AP Q + E + L G+ +P S++
Sbjct: 101 VRKFGVSIDCLNIAP-----VQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIW 155
Query: 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP-EAYAHDPENRRIWNAMYDL 337
+ + + + E R+L+P G + P + D + + L
Sbjct: 156 SQDAFLHSPDKLK---VFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL 208
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 20/153 (13%)
Query: 187 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMS 242
F D A Y ++ ++L++ VLD+GCG + +
Sbjct: 60 AFLD-AGHYQPLRDAIVAQLRERLDDKA--TAVLDIGCGEGYYTHAFADALPEITTFGL- 115
Query: 243 LAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLE 302
DV + I+ A +R T V + RLP+ S + I E
Sbjct: 116 ----DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR----IYAPC----KAEE 163
Query: 303 LDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMY 335
L R+++PGG+ + ++P I+N ++
Sbjct: 164 LARVVKPGGWVITATPGPRHLMELKGLIYNEVH 196
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 5e-06
Identities = 21/159 (13%), Positives = 47/159 (29%), Gaps = 16/159 (10%)
Query: 181 FPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DI 238
+ G + I + ++ + LN + D+G G + L + +
Sbjct: 5 YNSIGKQYSQTRVPDIRIVNAII----NLLNLPKGSV-IADIGAGTGGYSVALANQGLFV 59
Query: 239 IAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 297
A+ + Q A+ + G L P +S + I
Sbjct: 60 YAV-----EPSIVMRQQAVVHPQVEWFTGYAE--NLALPDKSVDGVISILA-IHHFSHLE 111
Query: 298 ILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYD 336
E+ R++R G + + A + +++
Sbjct: 112 KSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWE 150
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 5e-06
Identities = 38/235 (16%), Positives = 72/235 (30%), Gaps = 26/235 (11%)
Query: 134 PPPKGYKIPVRWPASRDEVWKANIPHTHLAE-----EKSDQHWMVVNGEKINFPGGGTHF 188
P G + S DE+WKA + K+ ++W V GG H
Sbjct: 15 LPISGRDTNGKTYRSTDEMWKAELTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGMDHV 74
Query: 189 HDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDV 248
HD + L LD G G+ LL+ + + +
Sbjct: 75 HDVDIEGSRNFIASLPGHGTS--------RALDCGAGIGRITKNLLTK--LYATTDLLEP 124
Query: 249 HENQIQFALERGIPSTLG---VLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLL-ELD 304
++ ++ A +G + + P +++L I D +
Sbjct: 125 VKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQ 184
Query: 305 RLLRPGGYFV----YSSPEAYAHDPENRRIWNAMYDLLKSMC---WKIVSKKDQT 352
+ L P GY S+ + + D E+ + + + ++V + Q
Sbjct: 185 QALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQE 239
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 6e-06
Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 217 RNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP 274
VLD+G G + +L +++ + D + ++ A E+G+ + + LP
Sbjct: 56 CRVLDLGGGTGKWSLFLQERGFEVVLV-----DPSKEMLEVAREKGVKNVVEAKAED-LP 109
Query: 275 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS--SPEAYAHDPENRRIWN 332
+PS +FE + +++ E+ R+L P G + + + + + W+
Sbjct: 110 FPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWD 169
Query: 333 AMYDLLK 339
+ LK
Sbjct: 170 QITRFLK 176
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 7e-06
Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 17/142 (11%)
Query: 217 RNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP 274
+ VLD+GC + GA + + + + + A E+ LG + T +P
Sbjct: 34 KEVLDIGCSSGALGAAIKENGTRVSGI-----EAFPEAAEQAKEKLDHVVLGDIETMDMP 88
Query: 275 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAM 334
Y F+ ++ L ++ ++ ++ G + S P N + +
Sbjct: 89 YEEEQFDCVIFGDV-LEHLFDPWAVIEKVKPYIKQNGVILASIP--------NVSHISVL 139
Query: 335 YDLLKS-MCWKIVSKKDQTVIW 355
LL + D+T I
Sbjct: 140 APLLAGNWTYTEYGLLDKTHIR 161
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 8e-06
Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 17/200 (8%)
Query: 165 EKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGC 224
K+ +W + GG H D I + + L+ + N LD G
Sbjct: 32 SKAKTYWKQIPPTVDGMLGGYGHISS-ID--INSSRKFLQRFLREGPNKTGTSCALDCGA 88
Query: 225 GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL-----GTKRLPYPSRS 279
G+ LL + + D+ E+ + A V G + S
Sbjct: 89 GIGRITKRLLLP--LFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDS 146
Query: 280 FELAHCSRCRIDWLQRDGILLL-ELDRLLRPGGYFVYS---SPEAYAHDPENRRI---WN 332
+++ + L LRP G V + E D + + +
Sbjct: 147 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLD 206
Query: 333 AMYDLLKSMCWKIVSKKDQT 352
+ ++ S +++++ Q
Sbjct: 207 VVRRIICSAGLSLLAEERQE 226
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 6/122 (4%)
Query: 219 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 276
+L + G +L S +++ A+ + + Q A E+G+ T
Sbjct: 33 ILCLAEGEGRNACFLASLGYEVTAVDQSSVGL-AKAKQLAQEKGVKITTVQSNLADFDIV 91
Query: 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS--SPEAYAHDPENRRIWNAM 334
+ ++E C + R L ++ + L+PGG F+ +PE ++ + + +
Sbjct: 92 ADAWEGIVSIFCHLPSSLRQQ-LYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLL 150
Query: 335 YD 336
Sbjct: 151 PK 152
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSR 278
+L+VG G + L + + + E + R +T + LP+P
Sbjct: 40 LLEVGAGTGYWLRRLPYPQKVGV-----EPSEAMLAVGRRRAPEATWVRAWGEALPFPGE 94
Query: 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 314
SF++ +++++ +LLE R+LRPGG V
Sbjct: 95 SFDVVLLFTT-LEFVEDVERVLLEARRVLRPGGALV 129
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 32/169 (18%)
Query: 184 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIA 240
G + G + + ++ + VLD+G G+ Y+
Sbjct: 32 GENYISSGGLEATKKILSDIELNENS--------KVLDIGSGLGGGCMYINEKYGAHTHG 83
Query: 241 MSLAPNDVHENQIQFALERGIPS---TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 297
+ D+ N + A ER + +P +F+L + D +
Sbjct: 84 I-----DICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYS----RDAILALS 134
Query: 298 I-----LLLELDRLLRPGGYFVYS----SPEAYAHDPENRRIWNAMYDL 337
+ L + + L+P G + + + + D + Y L
Sbjct: 135 LENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTL 183
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 10/126 (7%)
Query: 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS 277
+++G G F L I + + E + A +RG+ G + LP
Sbjct: 50 RGVEIGVGTGRFAVPL--KIKIGV-----EPSERMAEIARKRGVFVLKGTA--ENLPLKD 100
Query: 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDL 337
SF+ A I ++ L E R+L+ GGY + + +
Sbjct: 101 ESFDFA-LMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVF 159
Query: 338 LKSMCW 343
K+ +
Sbjct: 160 YKNARF 165
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 14/118 (11%)
Query: 219 VLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 276
++D GCG + YLL + + D++ ++ E+ S + + + P
Sbjct: 21 IVDYGCGNGFYCKYLLEFATKLYCI-----DINVIALKEVKEK-FDSVITL--SDPKEIP 72
Query: 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV---YSSPEAYAHDPENRRIW 331
S + + + ++ E+ R+L+ G + + P + R+
Sbjct: 73 DNSVDFILFANS-FHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMD 129
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 4e-05
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 12/105 (11%)
Query: 217 RNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL---GTK 271
VLD+GCG L + + + D + A G +
Sbjct: 54 ERVLDLGCGEGWLLRALADRGIEAVGV-----DGDRTLVDAARAAGAGEVHLASYAQLAE 108
Query: 272 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316
+ ++L C+ + LL + LL PGG V
Sbjct: 109 AKVPVGKDYDLI-CANFALLHQDIIE-LLSAMRTLLVPGGALVIQ 151
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 4e-05
Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 13/148 (8%)
Query: 188 FHDGADKY-------ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL--LSHDI 238
A Y ++ + ++ G L++G G L +
Sbjct: 5 LLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRY 64
Query: 239 IAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDWLQRDG 297
IA+ + + + A + V + +P P S +
Sbjct: 65 IALDADAAMLEVFRQKIA-GVDRKVQV-VQADARAIPLPDESVHGVIVVHL-WHLVPDWP 121
Query: 298 ILLLELDRLLRPGGYFVYSSPEAYAHDP 325
+L E R+L+PGG + +A A
Sbjct: 122 KVLAEAIRVLKPGGALLEGWDQAEASPE 149
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 15/122 (12%)
Query: 219 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPY 275
+L++GCG +L+ D+ A D A R G P
Sbjct: 47 ILELGCGAGYQAEAMLAAGFDVDAT-----DGSPELAAEASRRLGRP---VRTMLFHQLD 98
Query: 276 PSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWN 332
+++ C + + RD + +L + R L+PGG F S + R +N
Sbjct: 99 AIDAYDAVWAHAC-LLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYN 157
Query: 333 AM 334
Sbjct: 158 YP 159
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 12/122 (9%)
Query: 219 VLDVGCG--VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPY 275
VLD+G G + + I + V FA E+G+ + GT + LP+
Sbjct: 25 VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVAS-SFAQEKGVENVRFQQGTAESLPF 83
Query: 276 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV---YSSPEAYAHDPENRRIWN 332
P SF++ C R + E+ R+L+ G F+ + +PE DP N
Sbjct: 84 PDDSFDIITC-RYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE----DPVLDEFVN 138
Query: 333 AM 334
+
Sbjct: 139 HL 140
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 4e-04
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 10/111 (9%)
Query: 208 DKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTL 265
++L G +VL++ G + +L + A+ D I A G+ +
Sbjct: 39 ERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTAL-----DGSAEMIAEAGRHGLDNVE 93
Query: 266 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFV 314
P R ++ + + + D + + PGG
Sbjct: 94 FRQQDLFDWTPDRQWDAVFFAHW-LAHVPDDRFEAFWESVRSAVAPGGVVE 143
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 6e-04
Identities = 18/140 (12%), Positives = 35/140 (25%), Gaps = 18/140 (12%)
Query: 213 GGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK- 271
G + ++DVGCG + + + +D+ I+ A S
Sbjct: 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSF 93
Query: 272 ------------RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV---YS 316
+ ++ C W + LR G Y+
Sbjct: 94 KISSSDDFKFLGADSVDKQKIDMITAVEC-AHWFDFE-KFQRSAYANLRKDGTIAIWGYA 151
Query: 317 SPEAYAHDPENRRIWNAMYD 336
P + + + Y
Sbjct: 152 DPIFPDYPEFDDLMIEVPYG 171
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 6e-04
Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 32/142 (22%)
Query: 219 VLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-- 270
VLD+GCG YL S +I + D+ +NQ++ A + G+
Sbjct: 87 VLDLGCG-TGRDVYLASKLVGEHGKVIGV-----DMLDNQLEVARKYVEYHAEKFFGSPS 140
Query: 271 -----------------KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF 313
+ P S ++ C + L E+ R+LR GG
Sbjct: 141 RSNVRFLKGFIENLATAEPEGVPDSSVDIVIS-NCVCNLSTNKLALFKEIHRVLRDGGEL 199
Query: 314 VYSSPEAYAHDPENRRIWNAMY 335
+S A E + +Y
Sbjct: 200 YFSDVYADRRLSEAAQQDPILY 221
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 7e-04
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 15/106 (14%)
Query: 219 VLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTL------GVLGT 270
++D CG + +L +I + DV ++ ++ A + + + G++
Sbjct: 60 LIDFACGNGTQTKFLSQFFPRVIGL-----DVSKSALEIAAKENTAANISYRLLDGLVPE 114
Query: 271 KRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFV 314
+ S + R + + L L LL G
Sbjct: 115 QAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMY 160
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 615 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.57 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.5 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.48 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.47 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.46 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.45 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.45 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.45 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.45 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.44 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.44 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.44 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.43 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.43 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.43 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.42 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.42 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.42 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.41 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.41 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.4 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.4 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.4 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.4 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.39 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.39 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.37 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.37 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.37 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.37 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.36 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.36 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.35 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.35 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.35 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.35 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.35 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.35 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.35 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.35 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.35 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.35 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.34 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.34 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.34 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.33 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.33 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.33 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.32 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.32 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.32 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.32 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.31 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.31 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.31 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.31 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.31 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.3 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.3 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.3 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.29 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.29 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.29 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.29 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.28 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.27 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.27 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.27 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.27 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.26 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.25 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.25 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.24 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.23 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.22 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.22 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.2 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.19 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.19 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.19 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.18 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.18 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.17 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.17 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.16 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.16 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.16 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.15 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.15 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.15 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.13 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.13 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.12 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.12 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.11 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.11 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.11 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.1 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.08 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.08 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.08 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.07 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.07 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.06 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.06 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.06 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.05 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.04 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.04 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.04 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.03 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.03 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.03 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.02 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.02 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.02 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.01 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.01 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.99 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.99 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.99 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.99 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.98 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.97 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.97 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.97 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.96 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.96 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.96 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.96 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.95 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.94 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.94 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.94 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.94 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.93 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.92 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.92 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.92 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.92 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.92 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.92 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.91 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.91 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.91 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.91 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.9 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.9 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.9 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.89 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.89 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.89 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.88 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.88 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.88 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.87 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.86 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.86 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.86 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.86 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.85 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.85 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.84 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.84 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.84 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.83 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.83 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.83 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.82 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.82 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.81 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.81 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.8 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.8 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.8 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.8 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.79 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.79 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.79 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.79 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.79 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.78 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.77 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.77 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.77 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.77 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.77 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.76 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.75 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.75 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.74 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.72 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.72 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.72 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.72 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.71 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.71 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.71 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.7 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.7 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.69 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.69 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.69 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.68 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.68 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.68 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.68 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.66 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.65 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.65 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.65 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.65 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.64 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.63 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.61 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.61 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.61 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.58 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.58 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.58 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.57 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.57 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.57 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.56 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.56 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.55 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.53 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.52 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.51 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.51 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.5 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.5 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.49 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.49 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.47 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.47 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.47 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.47 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.45 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.45 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.44 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.39 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.31 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.3 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.3 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.29 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.23 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.22 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.16 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.16 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.15 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.13 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.13 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.02 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.0 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.91 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.85 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.83 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.83 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 97.83 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.8 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.73 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.72 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 97.71 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.7 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.65 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.61 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.54 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.54 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 97.52 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 97.47 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.46 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.37 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.36 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.31 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.31 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 97.26 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.25 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.25 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.24 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.24 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 97.18 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.17 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.11 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 97.1 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 97.09 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 97.08 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 97.06 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 97.06 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 97.01 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 96.97 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 96.97 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 96.91 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 96.9 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 96.86 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 96.85 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 96.84 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 96.84 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 96.84 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 96.82 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.82 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 96.81 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 96.79 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 96.79 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 96.74 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 96.74 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 96.73 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.71 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 96.7 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 96.68 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 96.66 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 96.66 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 96.65 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 96.63 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 96.58 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 96.57 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 96.55 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 96.52 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 96.51 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 96.51 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 96.5 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 96.47 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 96.46 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 96.46 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 96.42 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 96.41 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 96.41 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 96.38 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 96.36 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 96.35 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 96.32 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 96.31 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 96.3 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 96.29 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 96.26 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 96.25 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 96.25 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 96.25 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 96.25 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 96.21 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 96.2 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 96.2 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 96.19 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.19 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 96.18 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 96.18 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 96.16 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 96.14 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 96.11 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.1 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 96.1 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 96.1 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 96.1 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 96.1 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 96.09 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 96.06 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 96.06 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 96.04 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 96.04 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 96.0 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 95.95 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 95.94 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 95.81 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 95.81 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 95.76 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 95.75 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 95.75 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 95.68 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 95.68 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 95.65 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 95.62 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 95.61 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 95.55 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.55 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 95.54 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 95.53 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 95.53 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 95.51 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 95.49 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 95.49 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 95.47 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 95.41 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 95.41 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 95.4 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 95.38 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 95.38 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 95.36 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 95.35 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 95.34 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 95.32 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 95.3 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 95.2 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 95.19 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 95.14 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 95.14 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.07 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 95.05 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 94.99 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 94.97 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 94.75 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 94.67 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 94.6 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 94.58 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 94.56 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 94.55 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 94.52 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 94.5 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 94.48 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 94.47 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 94.43 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 94.08 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 94.06 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 94.04 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 93.96 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 93.83 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 93.8 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 93.42 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 93.37 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 93.29 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 93.28 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 93.2 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 93.14 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.98 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 92.9 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 92.84 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 92.83 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 92.76 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 92.75 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 92.72 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 92.58 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 92.55 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 92.49 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 92.43 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 92.4 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 92.4 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 92.39 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 92.39 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 92.32 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 92.18 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 92.14 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 92.13 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 91.92 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 91.88 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 91.87 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 91.85 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 91.83 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 91.83 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 91.79 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 91.79 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 91.74 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 91.64 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 91.4 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 91.34 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 91.29 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 91.28 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 91.22 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 91.18 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 91.1 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 91.1 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 91.01 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 91.0 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 91.0 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 90.77 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 90.65 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 90.61 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 90.49 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 90.46 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 90.44 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 90.43 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 90.43 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 90.39 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 90.34 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 90.25 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 90.22 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 90.19 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 90.11 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 89.97 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 89.93 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 89.36 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 89.19 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 89.03 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 88.97 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 88.61 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 88.38 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 88.23 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 87.94 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 87.78 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 87.74 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 87.69 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 86.84 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 86.76 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 86.74 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 86.54 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 86.48 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 86.19 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 85.5 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 85.47 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 85.32 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 85.09 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-15 Score=154.55 Aligned_cols=99 Identities=25% Similarity=0.327 Sum_probs=81.6
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d 295 (615)
..+|||||||+|.++..|++. +.++.+.|+++.|++.|++ ..++.+.+++++.+|+++++||+|+|+. ++||+ +
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~-~~~v~~~~~~~e~~~~~~~sfD~v~~~~-~~h~~-~ 113 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR-HPRVTYAVAPAEDTGLPPASVDVAIAAQ-AMHWF-D 113 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC-CTTEEEEECCTTCCCCCSSCEEEEEECS-CCTTC-C
T ss_pred CCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh-cCCceeehhhhhhhcccCCcccEEEEee-ehhHh-h
Confidence 368999999999999999875 2334445666777777654 4578999999999999999999999988 58887 4
Q ss_pred hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 296 DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 296 ~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+..++.|+.|+|||||.|++.....
T Consensus 114 ~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 114 LDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCC
Confidence 7789999999999999999877543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-13 Score=132.02 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=100.0
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
+..+|||||||+|.++..+++. +..+.+.|+++.+++.++++.. ++.+..+|+..++++ ++||+|+|.. +++|+
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~-~l~~~ 119 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTY-AFHHL 119 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEES-CGGGS
T ss_pred CCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECc-chhcC
Confidence 3468999999999999999875 3345555667777788877654 688999999999988 9999999988 69999
Q ss_pred cchHH--HHHHHHhccCCCeEEEEEcCCCCCCChh-----------------HHH-----HHHHHHHHHhhcceEEEEee
Q 007165 294 QRDGI--LLLELDRLLRPGGYFVYSSPEAYAHDPE-----------------NRR-----IWNAMYDLLKSMCWKIVSKK 349 (615)
Q Consensus 294 ~d~~~--~L~ei~RvLkPGG~Lvis~P~~~~~~~e-----------------~~~-----~w~~l~~La~~l~W~l~~~~ 349 (615)
+++.. +|.++.++|||||+++++++........ ... .-..+..++++.++++....
T Consensus 120 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 199 (220)
T 3hnr_A 120 TDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTR 199 (220)
T ss_dssp CHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEee
Confidence 98876 9999999999999999998654211100 000 01456777888888777655
Q ss_pred Cc
Q 007165 350 DQ 351 (615)
Q Consensus 350 ~~ 351 (615)
..
T Consensus 200 ~~ 201 (220)
T 3hnr_A 200 LN 201 (220)
T ss_dssp CS
T ss_pred cc
Confidence 43
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.9e-14 Score=139.32 Aligned_cols=103 Identities=17% Similarity=0.306 Sum_probs=80.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+..+|||||||+|.++..|+.. .|+++|+++.++..+. +.+.+.+. ++.+.++|+..+|+++++||+|++.. +++
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~-~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~-~l~ 114 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVAR-AFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRI-AAH 114 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEES-CGG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHH-HHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhh-hhH
Confidence 3478999999999999999865 4556655554443332 22223343 58899999999999999999999988 699
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|++++..+|.++.|+|||||+|+++++.
T Consensus 115 ~~~d~~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 115 HFPNPASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 9999999999999999999999998653
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-13 Score=135.94 Aligned_cols=103 Identities=25% Similarity=0.427 Sum_probs=80.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||||||+|.++..+++. +|+++|+++..+..+. +.+...++ ++.+..+|...+|+++++||+|++.. +
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~ 138 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQAN-ARATAAGLANRVTFSYADAMDLPFEDASFDAVWALE-S 138 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEES-C
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHhcCCCcceEEEECccccCCCCCCCccEEEEec-h
Confidence 3478999999999999998753 4555555544433332 22222344 48899999999999999999999988 6
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++|++++..+|.++.++|||||+++++++.
T Consensus 139 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 139 LHHMPDRGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp TTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred hhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence 999999999999999999999999998854
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=135.84 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=83.6
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
..+|||||||+|.++..+++.. .++.+.|+++.+++.|+++.. ++.+.++|+..+ +++++||+|+|.. +++|++
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~-~l~~~~ 117 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTH-VLEHID 117 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEES-CGGGCS
T ss_pred CCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhh-HHHhhc
Confidence 3579999999999999998751 244455666777777777654 688899998887 4678999999998 699999
Q ss_pred chHHHHHHHH-hccCCCeEEEEEcCCC
Q 007165 295 RDGILLLELD-RLLRPGGYFVYSSPEA 320 (615)
Q Consensus 295 d~~~~L~ei~-RvLkPGG~Lvis~P~~ 320 (615)
++..+|+++. |+|||||++++++|+.
T Consensus 118 ~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 118 DPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 9999999999 9999999999999765
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-13 Score=133.17 Aligned_cols=129 Identities=26% Similarity=0.307 Sum_probs=99.7
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc--CCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er--g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
..+|||||||+|.++..+++. +..+.+.|+++.+++.++++ ..++.+.++|...+++++++||+|++.. +++|+
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~ 129 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAIN-SLEWT 129 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEES-CTTSS
T ss_pred CCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcC-hHhhc
Confidence 468999999999999999876 33455556777777888776 4568899999999999999999999988 69999
Q ss_pred cchHHHHHHHHhccCCCeEEEEEcCCCCCCChhH-H-H-----------HHHHHHHHHhhcceEEEEe
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN-R-R-----------IWNAMYDLLKSMCWKIVSK 348 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~-~-~-----------~w~~l~~La~~l~W~l~~~ 348 (615)
+++..++.++.++|+|||+++++++......... . . .-..+..+++..+|+++..
T Consensus 130 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 130 EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 9999999999999999999999885432111000 0 0 0135677888888887753
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=137.44 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=78.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHc----C--CCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~er----g--~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
++.+|||||||+|.++..|++. .-.+..+.+.|+++.|++.|+++ + .++.+.++|+..+|++ .||+|++..
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~ 147 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 147 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeee
Confidence 4568999999999999998864 11233444556666666666554 3 3678999999988875 599999888
Q ss_pred cccccccch--HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 288 CRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 288 ~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++||+++. ..+|++++|+|||||.|+++++..
T Consensus 148 -~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 148 -TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp -CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred -eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence 69998755 468999999999999999987543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-13 Score=135.56 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEE
Q 007165 191 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTL 265 (615)
Q Consensus 191 ~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~ 265 (615)
........+.+.+.+ .+..+|||||||+|.++..++.. .|+++|+++.++..+. +.+.+.++ ++.+
T Consensus 20 ~~~~~~~~l~~~~~~--------~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~-~~~~~~~~~~~v~~ 90 (256)
T 1nkv_A 20 FTEEKYATLGRVLRM--------KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHF 90 (256)
T ss_dssp CCHHHHHHHHHHTCC--------CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEE
T ss_pred CCHHHHHHHHHhcCC--------CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHH-HHHHhcCCCcceEE
Confidence 344555566665542 23468999999999999988754 5666666655554443 22333454 4889
Q ss_pred EEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 266 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 266 ~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.++|+..+++ +++||+|+|.. ++++.+++..+|.++.|+|||||+++++++.
T Consensus 91 ~~~d~~~~~~-~~~fD~V~~~~-~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 91 IHNDAAGYVA-NEKCDVAACVG-ATWIAGGFAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp EESCCTTCCC-SSCEEEEEEES-CGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred EECChHhCCc-CCCCCEEEECC-ChHhcCCHHHHHHHHHHHcCCCeEEEEecCc
Confidence 9999999988 78999999988 6888999999999999999999999998764
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=131.54 Aligned_cols=129 Identities=19% Similarity=0.255 Sum_probs=93.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
++.+|||||||+|.++..+++. .|+++|+++..+..+. +.+...++ ++.+.++|...+|+++++||+|+|.. +
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~-~ 123 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFN-RNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG-A 123 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS-C
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHH-HHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC-C
Confidence 4578999999999999999875 4556655554443333 22233354 38999999999999999999999988 5
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCCCCC--CChhHHHHH----------HHHHHHHhhcceEEE
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--HDPENRRIW----------NAMYDLLKSMCWKIV 346 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~--~~~e~~~~w----------~~l~~La~~l~W~l~ 346 (615)
++++ ++..+++++.++|||||+++++++.... ........| ..+..++++.+|..+
T Consensus 124 ~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 191 (267)
T 3kkz_A 124 IYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPV 191 (267)
T ss_dssp GGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEE
T ss_pred ceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEE
Confidence 8888 7889999999999999999998864211 223333344 345566666677655
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-13 Score=130.59 Aligned_cols=100 Identities=13% Similarity=0.172 Sum_probs=79.6
Q ss_pred eEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 218 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+|||+|||+|.++..+++. .++++|+++..+..+. +.+...+. ++.+.++|...+++++++||+|++.. +++|
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIAL-KNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRG-SVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEES-CGGG
T ss_pred EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHhccccCceEEEEcCHHHCCCCcccccEEEECc-hHhh
Confidence 8999999999999999864 4556655544443333 22222243 58899999999999999999999988 6899
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+++..++.++.++|||||+++++++.
T Consensus 124 ~~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 124 WEDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 999999999999999999999998754
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=130.38 Aligned_cols=129 Identities=16% Similarity=0.267 Sum_probs=93.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||||||+|.++..++.. .|+++|+++..+..+. +.+.+.++. +.+.++|...+|+++++||+|+|.. +
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~ 123 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFN-ENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG-A 123 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES-C
T ss_pred CCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHH-HHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC-h
Confidence 4468999999999999998864 5666666655544333 223334543 8899999999999999999999998 5
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCCCCC--CChhHHHHHH----------HHHHHHhhcceEEE
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--HDPENRRIWN----------AMYDLLKSMCWKIV 346 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~--~~~e~~~~w~----------~l~~La~~l~W~l~ 346 (615)
++|+ ++..++.++.++|||||+++++++.... ........|. .+..+++..+|..+
T Consensus 124 l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 191 (257)
T 3f4k_A 124 IYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPT 191 (257)
T ss_dssp SCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEE
T ss_pred Hhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEE
Confidence 8887 7888999999999999999999864222 2222333442 44566666676655
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=133.21 Aligned_cols=130 Identities=14% Similarity=0.089 Sum_probs=99.7
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc-
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 294 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~- 294 (615)
..+|||||||+|.++..|+.. +..+.+.|+++.+++.|+++..++.+.++|+..+++++++||+|++.. +++|++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~~~ 117 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWY-SLIHMGP 117 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEES-SSTTCCT
T ss_pred CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehh-hHhcCCH
Confidence 357999999999999999876 234455566777888888887789999999999999899999999988 688886
Q ss_pred -chHHHHHHHHhccCCCeEEEEEcCCCCCCC-----h--hHHHHHHHHHHHHhhcceEEEEee
Q 007165 295 -RDGILLLELDRLLRPGGYFVYSSPEAYAHD-----P--ENRRIWNAMYDLLKSMCWKIVSKK 349 (615)
Q Consensus 295 -d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~-----~--e~~~~w~~l~~La~~l~W~l~~~~ 349 (615)
+...++.++.++|||||+++++.+...... . ...-....+..+++..+|+++...
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 180 (203)
T 3h2b_A 118 GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSH 180 (203)
T ss_dssp TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEE
Confidence 778999999999999999999885432100 0 000012456677788888877544
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-13 Score=135.71 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=85.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC---CCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+..+|||||||+|.++..++... +..+.+.|+++.+++.|+++. .++.+.++|...+|+++++||+|++.. +++
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~ 131 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRD-AIL 131 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEES-CGG
T ss_pred CCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHH-HHH
Confidence 45789999999999999998641 334455566777778887775 468899999999999999999999988 699
Q ss_pred cc--cchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WL--QRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~--~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|+ +++..++.++.|+|||||+++++++.
T Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (266)
T 3ujc_A 132 ALSLENKNKLFQKCYKWLKPTGTLLITDYC 161 (266)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hcChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 98 78889999999999999999998754
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-13 Score=139.13 Aligned_cols=103 Identities=18% Similarity=0.325 Sum_probs=81.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||||||+|.++..+++. .|+++|+++.++..+. +.+...++ ++.+.++|...+|+++++||+|++.. +
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~ 159 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNE-EYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD-A 159 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES-C
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHH-HHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc-h
Confidence 4578999999999999998764 5566655554443333 22222343 58899999999999999999999988 6
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++|++++..+|.++.|+|||||+|+++++.
T Consensus 160 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 160 FLHSPDKLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 899999999999999999999999998864
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.43 E-value=9e-14 Score=138.04 Aligned_cols=98 Identities=14% Similarity=0.226 Sum_probs=80.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcC---CCcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||||||+|.++..|+.. .|+++ |+++.+++.|+++. ..+.+.++|...+++++++||+|+|..
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~v-----D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~- 166 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLYATTDLL-----EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW- 166 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEE-----ESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEES-
T ss_pred CCCEEEEECCCcCHHHHHHHHhhcCEEEEE-----eCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcc-
Confidence 4578999999999999988754 34555 55566666666653 357888999999999889999999998
Q ss_pred cccccc--chHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQ--RDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~--d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+++|++ +...++.++.++|||||+++++++
T Consensus 167 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 167 TAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 588884 567899999999999999999885
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-13 Score=135.69 Aligned_cols=103 Identities=18% Similarity=0.291 Sum_probs=85.1
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+..+|||||||+|.++..++... .+..+.+.|+++.+++.++++..++.+.++|...++ ++++||+|++.. +++|++
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~~~ 109 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANA-VFQWVP 109 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEES-CGGGST
T ss_pred CCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeC-chhhCC
Confidence 34689999999999999887541 122344446666777788777777899999999988 789999999988 699999
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++..++.++.++|||||+++++.|..
T Consensus 110 ~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 110 DHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp THHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 99999999999999999999998765
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.1e-13 Score=131.18 Aligned_cols=104 Identities=22% Similarity=0.368 Sum_probs=82.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+..+|||||||+|.++..++.. .++++|+++.++..+. +.+.+.+. ++.+.++|...+|+++++||+|+|.. +++
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~-~l~ 98 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVAS-SFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRY-AAH 98 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEES-CGG
T ss_pred CCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCCeEEEecccccCCCCCCcEEEEEECC-chh
Confidence 4578999999999999999865 4666666555444333 22223343 58889999999999999999999988 588
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
|.+++..++.++.++|||||++++.++..
T Consensus 99 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 99 HFSDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 89999999999999999999999987543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-13 Score=131.00 Aligned_cols=99 Identities=25% Similarity=0.382 Sum_probs=84.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
+..+|||||||+|.++..+ .. +++++ |+++.+++.++++..++.+..+|...+|+++++||+|++.. +++|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~~~~v~~v-----D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~ 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-PYPQKVGV-----EPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFT-TLEFV 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-CCSEEEEE-----CCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEES-CTTTC
T ss_pred CCCeEEEECCCCCHhHHhC-CCCeEEEE-----eCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcC-hhhhc
Confidence 4578999999999999888 43 45555 55566667777766678889999999999999999999988 69999
Q ss_pred cchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+++..++.++.++|||||.+++++++.
T Consensus 109 ~~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 109 EDVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 999999999999999999999998765
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.4e-13 Score=127.59 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=83.8
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC-CCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg-~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
+..+|||||||+|.++..++.. +..+.+.|+++.+++.+++.+ .++.+..+|...+ +++++||+|+|+. +++|+
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~-~l~~~ 120 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAH-WLAHV 120 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEES-CGGGS
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEec-hhhcC
Confidence 3468999999999999999865 334555567777778887776 5688999998888 7889999999988 69999
Q ss_pred cch--HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 294 QRD--GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 294 ~d~--~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+++ ..+++++.++|||||.+++++++.
T Consensus 121 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 121 PDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 886 789999999999999999987543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-13 Score=133.66 Aligned_cols=98 Identities=11% Similarity=-0.012 Sum_probs=74.8
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc-----------------CCCcEEEEecCCCCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----------------GIPSTLGVLGTKRLPYPS 277 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er-----------------g~~~~~~v~d~~~Lpfpd 277 (615)
+..+|||+|||+|..+.+|+++ +.++.+.|+|+.|++.|+++ ..++.+.++|+..+++++
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 3468999999999999999865 23444445556666666554 346899999999999875
Q ss_pred -CCceEEEecccccccccch--HHHHHHHHhccCCCeEEEEE
Q 007165 278 -RSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 278 -~sFDlV~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis 316 (615)
++||+|++.. ++++++.. ..+++++.|+|||||++++.
T Consensus 99 ~~~fD~v~~~~-~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 99 IGHCAAFYDRA-AMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp HHSEEEEEEES-CGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred CCCEEEEEECc-chhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 8999999877 57777543 46899999999999984443
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-13 Score=134.91 Aligned_cols=99 Identities=21% Similarity=0.302 Sum_probs=81.4
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCC--CCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~L--pfpd~sFDlV~~s~~~l~~ 292 (615)
+..+|||||||+|.++..+++. +..+.+.|+++.+++.|+++ +.+..+|...+ ++++++||+|+|.. +++|
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~-~l~~ 113 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISH-FVEH 113 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEES-CGGG
T ss_pred CCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECC-chhh
Confidence 3468999999999999998865 23344556677777888776 67788887665 78899999999988 6999
Q ss_pred ccch--HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 293 LQRD--GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 293 ~~d~--~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++++ ..++.++.++|||||++++++++.
T Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 143 (240)
T 3dli_A 114 LDPERLFELLSLCYSKMKYSSYIVIESPNP 143 (240)
T ss_dssp SCGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred CCcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 9855 889999999999999999998764
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=127.33 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=95.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||+|||+|.++..++.. .++++|+++..+..+.... ...+. ++.+..+|...+++++++||+|+++.
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~- 114 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKV-NKLGLKNVEVLKSEENKIPLPDNTVDFIFMAF- 114 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH-HHHTCTTEEEEECBTTBCSSCSSCEEEEEEES-
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEecccccCCCCCCCeeEEEeeh-
Confidence 3468999999999999888743 4666666555554443222 22243 58899999999999999999999988
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcCCCCCC----ChhHHHHHHHHHHHHhhcceEEEEe
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH----DPENRRIWNAMYDLLKSMCWKIVSK 348 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~----~~e~~~~w~~l~~La~~l~W~l~~~ 348 (615)
++++++++..++.++.++|||||+++++++..... .....-....+..++++.+|+.+..
T Consensus 115 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 178 (219)
T 3dh0_A 115 TFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV 178 (219)
T ss_dssp CGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred hhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence 69999999999999999999999999987442111 1111112345667778888876653
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.9e-13 Score=132.60 Aligned_cols=102 Identities=17% Similarity=0.255 Sum_probs=85.7
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC--CCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+..+|||||||+|.++..+++... ..+.+.|+++.+++.|+++. ..+.+.++|+..+++++++||+|+|.. +++|
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~ 120 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSL-ALHY 120 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEES-CGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEch-hhhh
Confidence 457899999999999999987521 14455566677777777663 468899999999999999999999998 6999
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++++..+++++.++|||||+|+++.+.
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 121 IASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999999999999999999999998755
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.6e-13 Score=133.83 Aligned_cols=101 Identities=15% Similarity=0.280 Sum_probs=85.2
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+..+|||||||+|.++..+++. +..+.+.|+++.+++.++++..++.+.++|+..+|+ +++||+|++.. +++|++
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~-~l~~~~ 131 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQS---GAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNA-MLHWVK 131 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEES-CGGGCS
T ss_pred CCCEEEEecCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcc-hhhhCc
Confidence 3468999999999999999863 334555566777778887776678899999999997 58999999988 699999
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++..++.++.|+|||||+++++.+..
T Consensus 132 d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 132 EPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 99999999999999999999988653
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6.6e-13 Score=132.22 Aligned_cols=98 Identities=15% Similarity=0.212 Sum_probs=82.7
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----CCCcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
+..+|||||||+|.++..+++. +..+.+.|+++.+++.|+++ ..++.+.++|...+++++++||+|++.. ++
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 114 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVH-LW 114 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEES-CG
T ss_pred CCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECC-ch
Confidence 3578999999999999999875 23445556666677777665 3568899999999999999999999988 69
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEE
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
||++++..++.++.++|||||++++.
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 99999999999999999999999997
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.3e-13 Score=133.87 Aligned_cols=112 Identities=15% Similarity=0.170 Sum_probs=89.9
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCC
Q 007165 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL 273 (615)
Q Consensus 194 ~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~L 273 (615)
.+.+.+.+.+.. .+..+|||||||+|.++..+++. +..+.+.|+++.+++.|+++. ++.+.++|...+
T Consensus 21 ~~~~~l~~~~~~--------~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~~ 88 (261)
T 3ege_A 21 RIVNAIINLLNL--------PKGSVIADIGAGTGGYSVALANQ---GLFVYAVEPSIVMRQQAVVHP-QVEWFTGYAENL 88 (261)
T ss_dssp HHHHHHHHHHCC--------CTTCEEEEETCTTSHHHHHHHTT---TCEEEEECSCHHHHHSSCCCT-TEEEECCCTTSC
T ss_pred HHHHHHHHHhCC--------CCCCEEEEEcCcccHHHHHHHhC---CCEEEEEeCCHHHHHHHHhcc-CCEEEECchhhC
Confidence 455666666652 23578999999999999999864 234445566667777666554 889999999999
Q ss_pred CCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 274 PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 274 pfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|+++++||+|+|.. +++|++++..+++++.|+|| ||++++.+++
T Consensus 89 ~~~~~~fD~v~~~~-~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 89 ALPDKSVDGVISIL-AIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp CSCTTCBSEEEEES-CGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred CCCCCCEeEEEEcc-hHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 99999999999998 58999999999999999999 9988887754
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=126.85 Aligned_cols=100 Identities=22% Similarity=0.364 Sum_probs=80.7
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC---CCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+..+|||||||+|.++..+++. +..+.+.|+++.+++.|+++. .++.+.++|...++ ++++||+|+|+. +++
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~ 125 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAE-VLY 125 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEES-CGG
T ss_pred CCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEcc-HHH
Confidence 4578999999999999999875 234444566666667766653 35789999998888 679999999998 699
Q ss_pred cccch---HHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WLQRD---GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~~d~---~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|++++ ..++.++.++|||||+++++++.
T Consensus 126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 99877 46799999999999999998754
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.37 E-value=6e-12 Score=118.77 Aligned_cols=125 Identities=16% Similarity=0.207 Sum_probs=96.3
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+..+|||+|||+|.++..++.. +.++.+.|+++.+++.++++..++.+...|...+++++++||+|++...++++..
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred CCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 3468999999999999999875 3355566777778888888776789999999888888899999998733677774
Q ss_pred --chHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEe
Q 007165 295 --RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (615)
Q Consensus 295 --d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~ 348 (615)
+...++.++.++|+|||.+++..+...... ...+..+++..++.+...
T Consensus 123 ~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~------~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 123 EDGREPALANIHRALGADGRAVIGFGAGRGWV------FGDFLEVAERVGLELENA 172 (195)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCC------HHHHHHHHHHHTEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcC------HHHHHHHHHHcCCEEeee
Confidence 447799999999999999999886542222 234556666777776543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-12 Score=124.14 Aligned_cols=102 Identities=23% Similarity=0.392 Sum_probs=82.7
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----CC------CcEEEEecCCCCCCCCCCceEEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI------PSTLGVLGTKRLPYPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g~------~~~~~v~d~~~Lpfpd~sFDlV~ 284 (615)
+..+|||+|||+|.++..++.. +..+.+.|+++.+++.++++ +. ++.+...|...+++++++||+|+
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 3468999999999999999876 23444556666666776664 32 36888999999999999999999
Q ss_pred ecccccccccchH---HHHHHHHhccCCCeEEEEEcCCC
Q 007165 285 CSRCRIDWLQRDG---ILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 285 ~s~~~l~~~~d~~---~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.. ++++++++. .+++++.++|||||+++++++..
T Consensus 107 ~~~-~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 107 MQA-FLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp EES-CGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred Ecc-hhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 988 699998877 89999999999999999987543
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-12 Score=126.68 Aligned_cols=104 Identities=15% Similarity=0.255 Sum_probs=83.0
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
.+..+|||||||+|.++..++... .+..+.+.|+++.+++.|+++.. ++.+..+|...++++ ++||+|++.. ++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~-~l 119 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSAL-SI 119 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEES-CG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeC-cc
Confidence 345789999999999999988651 13344455666667777766532 688999999999987 8999999998 69
Q ss_pred ccccchH--HHHHHHHhccCCCeEEEEEcCCC
Q 007165 291 DWLQRDG--ILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 291 ~~~~d~~--~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+|++++. .+++++.|+|||||+++++++..
T Consensus 120 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 120 HHLEDEDKKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 9988775 59999999999999999988554
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.6e-12 Score=123.42 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=75.7
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc----CC------CcEEEEecCCCCCCCCCCce
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GI------PSTLGVLGTKRLPYPSRSFE 281 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er----g~------~~~~~v~d~~~Lpfpd~sFD 281 (615)
..+|||||||+|.++..++.. +++++| +++.+++.|+++ +. ++.+..+|+..+++++++||
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD-----~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 104 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVD-----VSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYD 104 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTSTTCCEEEEEE-----SCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCS
T ss_pred CCEEEEecCCCCHHHHHHHhcCCCCEEEEEE-----CCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCC
Confidence 468999999999999999864 355554 455555555543 22 68899999988888889999
Q ss_pred EEEecccccccccch--HHHHHHHHhccCCCeEEEEEc
Q 007165 282 LAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 282 lV~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+|+|.. +++|++++ ..+++++.++|||||.++.+.
T Consensus 105 ~V~~~~-~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 105 AATVIE-VIEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp EEEEES-CGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred EEEEHH-HHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 999988 69998866 689999999999999666543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=127.56 Aligned_cols=102 Identities=25% Similarity=0.394 Sum_probs=85.0
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+..+|||||||+|.++..++.... ..+.+.|+++.+++.|+++.. ++.+..+|...+++++++||+|++.. ++++
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~ 119 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSL-ALHY 119 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEES-CGGG
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEec-cccc
Confidence 347899999999999999987521 145555677777788877643 47888999988998889999999988 6999
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+++..+++++.++|||||++++++++
T Consensus 120 ~~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 120 VEDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cchHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 999999999999999999999998864
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.7e-13 Score=135.06 Aligned_cols=114 Identities=20% Similarity=0.349 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----C-----C
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----G-----I 261 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g-----~ 261 (615)
..+.+.+.+.+... +..+|||||||+|.++..|++. .|+++ |+++.+++.|+++ + .
T Consensus 43 ~~~~~~l~~~l~~~--------~~~~vLDiGcG~G~~~~~l~~~~~~v~gv-----D~s~~~l~~a~~~~~~~~~~~~~~ 109 (293)
T 3thr_A 43 AEYKAWLLGLLRQH--------GCHRVLDVACGTGVDSIMLVEEGFSVTSV-----DASDKMLKYALKERWNRRKEPAFD 109 (293)
T ss_dssp HHHHHHHHHHHHHT--------TCCEEEETTCTTSHHHHHHHHTTCEEEEE-----ESCHHHHHHHHHHHHHTTTSHHHH
T ss_pred HHHHHHHHHHhccc--------CCCEEEEecCCCCHHHHHHHHCCCeEEEE-----ECCHHHHHHHHHhhhhcccccccc
Confidence 44555566665422 3468999999999999999876 44555 4555555555432 1 2
Q ss_pred CcEEEEecCCCCC---CCCCCceEEEec-ccccccccc-------hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 262 PSTLGVLGTKRLP---YPSRSFELAHCS-RCRIDWLQR-------DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 262 ~~~~~v~d~~~Lp---fpd~sFDlV~~s-~~~l~~~~d-------~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++.+..+|...++ +++++||+|+|. . +++|+++ ...+++++.++|||||+|+++.++.
T Consensus 110 ~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~-~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 110 KWVIEEANWLTLDKDVPAGDGFDAVICLGN-SFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp TCEEEECCGGGHHHHSCCTTCEEEEEECTT-CGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred eeeEeecChhhCccccccCCCeEEEEEcCh-HHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 4677888888887 888999999998 6 6999988 7889999999999999999998763
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=133.14 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=77.7
Q ss_pred CCCeEEEECCCCchHHHHHhc---C--CCccccCChhchhHHHHHHHHHc-------CCCcEEEEecCCCCCCCC-----
Q 007165 215 NIRNVLDVGCGVASFGAYLLS---H--DIIAMSLAPNDVHENQIQFALER-------GIPSTLGVLGTKRLPYPS----- 277 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~---~--~V~gvdis~~Dls~a~i~~A~er-------g~~~~~~v~d~~~Lpfpd----- 277 (615)
+..+|||||||+|.++..|++ . .|+++|++ +.+++.|+++ ..++.+.++|+..+++++
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s-----~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 110 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLS-----ATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVD 110 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESC-----HHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTT
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCC-----HHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccccccc
Confidence 457899999999999999984 2 45556555 4444554443 457899999999998877
Q ss_pred -CCceEEEecccccccccchHHHHHHHHhccCCCeEEEEE
Q 007165 278 -RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 278 -~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
++||+|+|+. ++||+ ++..++.++.++|||||.|++.
T Consensus 111 ~~~fD~V~~~~-~l~~~-~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 111 KQKIDMITAVE-CAHWF-DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp SSCEEEEEEES-CGGGS-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCeeEEeHhh-HHHHh-CHHHHHHHHHHhcCCCcEEEEE
Confidence 8999999998 68999 9999999999999999999983
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-12 Score=124.66 Aligned_cols=102 Identities=19% Similarity=0.353 Sum_probs=78.5
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccc--cc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR--ID 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~--l~ 291 (615)
..+|||+|||+|.++..++.. +++++|+++..+..+. +.+...+.++.+..+|...+++++++||+|++.. + ++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~~~~~ 116 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR-EYAKSRESNVEFIVGDARKLSFEDKTFDYVIFID-SIVHF 116 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEES-CGGGC
T ss_pred CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHhcCCCceEEECchhcCCCCCCcEEEEEEcC-chHhC
Confidence 468999999999999998865 4556655544443332 2222234678999999999888889999999887 5 44
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+..+...++.++.++|||||++++..++
T Consensus 117 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 117 EPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 5567788999999999999999998865
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=132.00 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=80.8
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----CCCcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
+..+|||||||+|.++..+++..-.+..+.+.|+++.+++.|+++ +.++.+.++|+..++++ ++||+|++.. ++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~-~l 99 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHA-FL 99 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEES-CG
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECC-hh
Confidence 457899999999999999986411122333334444455544443 45788999999999885 6999999988 69
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++++++..++.++.++|||||++++.+|+
T Consensus 100 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 100 LHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 99999999999999999999999999887
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-12 Score=124.83 Aligned_cols=95 Identities=22% Similarity=0.315 Sum_probs=81.6
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d 295 (615)
..+|||||||+|.++..++.. +++ |+++.+++.++++ .+.+..+|...+++++++||+|++.. +++++++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~--~~v-----D~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~~~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK--IGV-----EPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVT-TICFVDD 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC--EEE-----ESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEES-CGGGSSC
T ss_pred CCcEEEeCCCCCHHHHHHHHH--hcc-----CCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcc-hHhhccC
Confidence 467999999999999999876 555 5556666777776 57888899999999889999999988 6999999
Q ss_pred hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 296 DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 296 ~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+..++.++.++|+|||+++++.++.
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 9999999999999999999988654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=133.66 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=82.0
Q ss_pred CCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
.+..+|||||||+|.++..+++. .|+++|+++..+..+. +.+...++ ++.+.++|+..+|+++++||+|++..
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~- 193 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGN-RRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE- 193 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES-
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC-
Confidence 34578999999999999998764 5666666555444333 22333454 48999999999999999999999988
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+++|+ +...++.++.|+|||||++++.++..
T Consensus 194 ~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~ 224 (312)
T 3vc1_A 194 STMYV-DLHDLFSEHSRFLKVGGRYVTITGCW 224 (312)
T ss_dssp CGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred chhhC-CHHHHHHHHHHHcCCCcEEEEEEccc
Confidence 58888 58899999999999999999988543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=132.06 Aligned_cols=103 Identities=21% Similarity=0.382 Sum_probs=81.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||||||+|.++..++.. .++++|+++..+..+.. .+...++ ++.+...|...+++++++||+|++.. +
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~ 114 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARE-NTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCF-V 114 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEES-C
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEcccccCCCCCCCeeEEEEec-h
Confidence 4578999999999999988754 45566555544433332 2222343 58889999999999999999999988 6
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++|++++..++.++.++|||||++++.++.
T Consensus 115 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 115 LEHLQSPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 999999999999999999999999998754
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=128.21 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=80.4
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC-----CCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-----IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg-----~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||||||+|.++..|+... ...+.+.|+++.+++.|+++. ..+.+..+|+..+++++++||+|++.. +
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~ 155 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW-V 155 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES-C
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcc-h
Confidence 45789999999999999988652 223444455566666666553 246788899988998888999999988 6
Q ss_pred cccccchH--HHHHHHHhccCCCeEEEEEcCC
Q 007165 290 IDWLQRDG--ILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 290 l~~~~d~~--~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+++++++. .++.++.++|||||+|+++++.
T Consensus 156 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 187 (241)
T 2ex4_A 156 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM 187 (241)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 88888754 8999999999999999998753
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-12 Score=133.18 Aligned_cols=99 Identities=20% Similarity=0.273 Sum_probs=81.0
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCC-CCCCCceEEEec
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLP-YPSRSFELAHCS 286 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lp-fpd~sFDlV~~s 286 (615)
..+|||||||+|.++..++.. .|+++ |+++.+++.|+++ ++ ++.+..+|...++ +++++||+|+|.
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gv-----D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 143 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGHQVILC-----DLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFH 143 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEE-----ESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEE
T ss_pred CCEEEEeCCcchHHHHHHHHCCCEEEEE-----ECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEEC
Confidence 468999999999999999875 44555 4555555555443 43 4788999998887 788999999998
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
. +++|++++..++.++.++|||||++++..++.
T Consensus 144 ~-~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (285)
T 4htf_A 144 A-VLEWVADPRSVLQTLWSVLRPGGVLSLMFYNA 176 (285)
T ss_dssp S-CGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred c-hhhcccCHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence 8 69999999999999999999999999988653
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=131.67 Aligned_cols=101 Identities=21% Similarity=0.388 Sum_probs=83.9
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d 295 (615)
..+|||||||+|.++..+++. +.++.+.|+++.+++.|+++... .+.++|...+++++++||+|++....+|+.++
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence 468999999999999999875 33455557777777888777543 37888999999989999999998755667688
Q ss_pred hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 296 DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 296 ~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+..++.++.++|||||.++++.++.
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 8999999999999999999998764
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-12 Score=129.20 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=82.1
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc-
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 294 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~- 294 (615)
..+|||||||+|.++..|++. +..+.+.|+++.+++.|+++..++.+.++|+..+++ +++||+|+|...+++|++
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCH
T ss_pred CCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCC
Confidence 468999999999999999876 234555577777888888877788999999999888 689999999874588885
Q ss_pred --chHHHHHHHHhccCCCeEEEEEc
Q 007165 295 --RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 295 --d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+...+|.++.++|||||+|++..
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 45678999999999999999975
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-13 Score=137.89 Aligned_cols=99 Identities=10% Similarity=0.105 Sum_probs=70.0
Q ss_pred CCCeEEEECCCCchHHHHH----hcC--CC----ccccCChhchhHHHHHHHHHc-----CC-CcE--EEEecCCCCC--
Q 007165 215 NIRNVLDVGCGVASFGAYL----LSH--DI----IAMSLAPNDVHENQIQFALER-----GI-PST--LGVLGTKRLP-- 274 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L----~~~--~V----~gvdis~~Dls~a~i~~A~er-----g~-~~~--~~v~d~~~Lp-- 274 (615)
+..+|||||||+|.++..+ ..+ .+ +++|++ +.|++.|+++ ++ ++. +..++++.++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S-----~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 126 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPS-----AEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSR 126 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSC-----HHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCC-----HHHHHHHHHHHHhccCCCcceEEEEecchhhhhhh
Confidence 4568999999999766533 221 22 555554 4555544433 32 233 3444444443
Q ss_pred ----CCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 275 ----YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 275 ----fpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+++++||+|+|+. ++||++|+..+|+++.|+|||||+|++..+.
T Consensus 127 ~~~~~~~~~fD~V~~~~-~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 127 MLEKKELQKWDFIHMIQ-MLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp HHTTTCCCCEEEEEEES-CGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hccccCCCceeEEEEee-eeeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 6689999999998 6999999999999999999999999998643
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-12 Score=138.02 Aligned_cols=126 Identities=21% Similarity=0.233 Sum_probs=93.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHc---------C----CCcEEEEecCCCC---
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER---------G----IPSTLGVLGTKRL--- 273 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~er---------g----~~~~~~v~d~~~L--- 273 (615)
++.+|||||||+|.++..|+.. .|+++|+ ++.+++.|+++ | .++.+.++|+..+
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~-----s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~ 157 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDM-----LDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA 157 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEEC-----CHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEEC-----CHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc
Confidence 4578999999999998888753 4556655 55555555544 4 5789999998887
Q ss_pred ---CCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHH----HH----------HHHHHH
Q 007165 274 ---PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR----RI----------WNAMYD 336 (615)
Q Consensus 274 ---pfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~----~~----------w~~l~~ 336 (615)
++++++||+|++.. +++|.+++..+|.++.|+|||||+|+++++.......... .. +..+..
T Consensus 158 ~~~~~~~~~fD~V~~~~-~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (383)
T 4fsd_A 158 EPEGVPDSSVDIVISNC-VCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRR 236 (383)
T ss_dssp BSCCCCTTCEEEEEEES-CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHH
T ss_pred ccCCCCCCCEEEEEEcc-chhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHH
Confidence 89999999999887 6999999999999999999999999998754322111111 01 256677
Q ss_pred HHhhcceEEE
Q 007165 337 LLKSMCWKIV 346 (615)
Q Consensus 337 La~~l~W~l~ 346 (615)
++++.+|..+
T Consensus 237 ll~~aGF~~v 246 (383)
T 4fsd_A 237 LVAEAGFRDV 246 (383)
T ss_dssp HHHHTTCCCE
T ss_pred HHHHCCCceE
Confidence 7777777544
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=122.37 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=81.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+..+|||+|||+|.++..+++.. . .+.+.|+++.+++.++++..++.+...| +++++++||+|++.. ++++.+
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~--~-~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~-~l~~~~ 89 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFA--T-KLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFAN-SFHDMD 89 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTE--E-EEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEES-CSTTCS
T ss_pred CCCeEEEECCCCCHHHHHHHhhc--C-eEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEcc-chhccc
Confidence 34689999999999999998762 1 4445566677778887776678888877 778889999999988 699999
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++..+++++.++|||||++++.++.
T Consensus 90 ~~~~~l~~~~~~L~pgG~l~~~~~~ 114 (170)
T 3i9f_A 90 DKQHVISEVKRILKDDGRVIIIDWR 114 (170)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 9999999999999999999998754
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=126.93 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=79.8
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc-
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 294 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~- 294 (615)
..+|||||||+|.++..+++. +..+.+.|+++.+++.++++. ++.+..+|...++ ++++||+|+|+. +++|++
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~~~~ 117 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHA-CLLHVPR 117 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECS-CGGGSCH
T ss_pred CCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecC-chhhcCH
Confidence 468999999999999999876 234445566666777776652 4566788888888 789999999988 688887
Q ss_pred -chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 295 -RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 295 -d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+...+|.++.++|||||+++++.+..
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~ 144 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSG 144 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 66789999999999999999987653
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-12 Score=124.50 Aligned_cols=120 Identities=17% Similarity=0.266 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecC
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 270 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~ 270 (615)
..+.+.+.+++... ..+..+|||+|||+|.++..+++. .++++|+++.++..+.. .+...+.++.+.++|.
T Consensus 21 ~~~~~~~~~~l~~~------~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~-~~~~~~~~~~~~~~d~ 93 (246)
T 1y8c_A 21 KKWSDFIIEKCVEN------NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAEN-KFRSQGLKPRLACQDI 93 (246)
T ss_dssp HHHHHHHHHHHHTT------TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHH-HHHHTTCCCEEECCCG
T ss_pred HHHHHHHHHHHHHh------CCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHH-HHhhcCCCeEEEeccc
Confidence 44555556665422 124578999999999999999865 45566555544433331 2222345788999999
Q ss_pred CCCCCCCCCceEEEecccccccc---cchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 271 KRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 271 ~~Lpfpd~sFDlV~~s~~~l~~~---~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
..++++ ++||+|++...+++|+ .+...+|.++.++|||||+++++.++.
T Consensus 94 ~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 94 SNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp GGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred ccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 888877 8999999886248888 566789999999999999999987653
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-12 Score=122.50 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=74.8
Q ss_pred eEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----CCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+|||||||+|.++..++.. .++++|+ ++.+++.|+++ +.++.+.++|+..+++++++||+|+++. .+
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~-----s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~ 104 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQ-----SSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CH 104 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECS-----SHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CC
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEEC-----CHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hc
Confidence 8999999999999999865 4455555 44444444433 5678899999998998889999999864 33
Q ss_pred c-ccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 W-LQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~-~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+ ..+...++.++.++|||||+++++++.
T Consensus 105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 3 346678999999999999999998754
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-12 Score=131.51 Aligned_cols=98 Identities=13% Similarity=0.039 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----------------------CCCcEEEEecCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----------------------GIPSTLGVLGTKR 272 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----------------------g~~~~~~v~d~~~ 272 (615)
+..+|||+|||+|..+.+|++. |.++.+.|+|+.+++.|+++ +.++.+.++|+..
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 3468999999999999999875 23444445555555665433 2468899999999
Q ss_pred CCCCC-CCceEEEecccccccccch--HHHHHHHHhccCCCeEEEEE
Q 007165 273 LPYPS-RSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 273 Lpfpd-~sFDlV~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis 316 (615)
+++++ ++||+|++.. ++++++.. ..+++++.|+|||||+|++.
T Consensus 145 l~~~~~~~FD~V~~~~-~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRG-ALVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp GGGGCCCCEEEEEESS-STTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCcccCCCEEEEEEhh-hhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 98764 8999999876 57776543 56999999999999999754
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-12 Score=125.42 Aligned_cols=100 Identities=20% Similarity=0.231 Sum_probs=80.9
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc-
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 294 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~- 294 (615)
..+|||+|||+|.++..+++.. ..+.+.|+++.+++.|+++..++.+..+|...+++ +++||+|+|+..+++|+.
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCS
T ss_pred CCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCC
Confidence 4689999999999999988651 13444466677778888776678999999988887 689999997765788884
Q ss_pred --chHHHHHHHHhccCCCeEEEEEcCC
Q 007165 295 --RDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 295 --d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+...++.++.++|||||+++++.+.
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWW 143 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 4567999999999999999998654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-12 Score=123.61 Aligned_cols=102 Identities=17% Similarity=0.274 Sum_probs=78.0
Q ss_pred CCeEEEECCCCchHH-HHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 216 IRNVLDVGCGVASFG-AYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a-~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
..+|||+|||+|.++ ..+... +++++|+++.++..+. +.+.+.+.++.+.++|+..+++++++||+|++.. +++|
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~ 101 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAE-NFSRENNFKLNISKGDIRKLPFKDESMSFVYSYG-TIFH 101 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHH-HHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECS-CGGG
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHH-HHHHhcCCceEEEECchhhCCCCCCceeEEEEcC-hHHh
Confidence 468999999999874 444432 5666666665554433 2223345678899999999999889999999887 5788
Q ss_pred c--cchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 293 L--QRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 293 ~--~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+ .+...++.++.++|||||+++++++.
T Consensus 102 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 102 MRKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 7 66788999999999999999998754
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-12 Score=120.96 Aligned_cols=99 Identities=19% Similarity=0.340 Sum_probs=76.9
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
..+|||+|||+|.++..++.. +++++|+++..+..+.. .+...+. ++.+..+|...+++ +++||+|++.. +++|
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~-~l~~ 109 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVER-IKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTV-VLMF 109 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEES-CGGG
T ss_pred CCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcc-hhhh
Confidence 468999999999999999865 45666655554443332 2222344 68889999988888 78999999988 5888
Q ss_pred cc--chHHHHHHHHhccCCCeEEEEEc
Q 007165 293 LQ--RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 293 ~~--d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++ +...++.++.++|||||++++..
T Consensus 110 ~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 110 LEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 76 66889999999999999988765
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.2e-12 Score=130.18 Aligned_cols=98 Identities=20% Similarity=0.237 Sum_probs=78.1
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----C----CCcEEEEecCCCCCCCCCCceEEEec
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----G----IPSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g----~~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
.+|||||||+|.++..|++. +|+++|++ +.+++.|+++ + .++.+.++|+..+++ +++||+|+|+
T Consensus 84 ~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s-----~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~ 157 (299)
T 3g2m_A 84 GPVLELAAGMGRLTFPFLDLGWEVTALELS-----TSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVIS 157 (299)
T ss_dssp SCEEEETCTTTTTHHHHHTTTCCEEEEESC-----HHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEEC
T ss_pred CcEEEEeccCCHHHHHHHHcCCeEEEEECC-----HHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEEC
Confidence 47999999999999999876 45555554 4555555443 3 468899999999987 6899999987
Q ss_pred ccccccccc--hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 287 RCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 287 ~~~l~~~~d--~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
..++++.+. ...+|.++.++|||||+|++.+++.
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 158 SGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 667888763 4779999999999999999998664
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6.1e-12 Score=122.51 Aligned_cols=96 Identities=21% Similarity=0.255 Sum_probs=75.8
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc----CC------CcEEEEecCCCCCCCCCCce
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GI------PSTLGVLGTKRLPYPSRSFE 281 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er----g~------~~~~~v~d~~~Lpfpd~sFD 281 (615)
..+|||||||+|.++..+++. .++++|+ ++.+++.|+++ +. ++.+.++|+..+++++++||
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~-----s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 104 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDV-----SYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYD 104 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTTCSEEEEEES-----CHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCS
T ss_pred CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEEC-----CHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcC
Confidence 468999999999999999864 4555555 45555555543 22 58889999888887778999
Q ss_pred EEEecccccccccch--HHHHHHHHhccCCCeEEEEEc
Q 007165 282 LAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 282 lV~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+|+|.. +++|++++ ..+++++.++|||||.++++.
T Consensus 105 ~v~~~~-~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 105 AATVIE-VIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp EEEEES-CGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred EEeeHH-HHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 999988 69988866 789999999999999777654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.9e-12 Score=121.13 Aligned_cols=102 Identities=22% Similarity=0.327 Sum_probs=78.5
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC---CCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
..+|||+|||+|.++..++.... ..+.+.|+++.+++.|+++. .++.+.++|...+++++++||+|++.. ++++
T Consensus 43 ~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~-~~~~ 119 (215)
T 2pxx_A 43 EDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKG-TLDA 119 (215)
T ss_dssp TCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEES-HHHH
T ss_pred CCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECc-chhh
Confidence 46799999999999999986521 03344455566666666553 467889999999999889999999876 4544
Q ss_pred c---------------cchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 293 L---------------QRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 293 ~---------------~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+ .+...++.++.++|||||.+++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 3 355789999999999999999998764
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-12 Score=129.16 Aligned_cols=97 Identities=14% Similarity=0.235 Sum_probs=76.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCCCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lpfpd~sFDlV~~ 285 (615)
+..+|||||||+|.++..+++. .|+++| +++.+++.|+++ +. ++.+..+|...+| ++||+|++
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd-----~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~ 135 (287)
T 1kpg_A 64 PGMTLLDVGCGWGATMMRAVEKYDVNVVGLT-----LSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVS 135 (287)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEE-----SCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEE
T ss_pred CcCEEEEECCcccHHHHHHHHHcCCEEEEEE-----CCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEE
Confidence 4468999999999999988843 455554 455555555543 33 5788888887766 88999999
Q ss_pred cccccccc--cchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 SRCRIDWL--QRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 s~~~l~~~--~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.. +++|+ .+...++.++.|+|||||++++.++..
T Consensus 136 ~~-~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 136 IG-AFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp ES-CGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred eC-chhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 88 58888 567889999999999999999988653
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.9e-12 Score=129.27 Aligned_cols=101 Identities=13% Similarity=0.211 Sum_probs=76.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
++.+|||||||+|.++..+++. +|+++|+++..+..+. +.+...++ ++.+..+|...+ +++||+|++.. +
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~-~ 146 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLG-A 146 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHH-HHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEES-C
T ss_pred CcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEECCHHHc---CCCccEEEEcc-h
Confidence 4578999999999999998764 4556655544443333 22223344 478888888776 68999999988 6
Q ss_pred cccccch---------HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 290 IDWLQRD---------GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 290 l~~~~d~---------~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++|++++ ..++.++.++|||||++++.++..
T Consensus 147 ~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 186 (302)
T 3hem_A 147 FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 186 (302)
T ss_dssp GGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred HHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence 8998665 689999999999999999987543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.2e-12 Score=130.15 Aligned_cols=102 Identities=21% Similarity=0.109 Sum_probs=78.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----CCC--cEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIP--STLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||||||+|.++..++.+...+..+.+.|+++.+++.|+++ +.. +.+.++|+..++++ ++||+|++..
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~- 195 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG- 195 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS-
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECC-
Confidence 357899999999999999853222233444445556666666554 333 78999999999988 9999999887
Q ss_pred ccccccchHH---HHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQRDGI---LLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d~~~---~L~ei~RvLkPGG~Lvis~P 318 (615)
+++|.+++.. ++.++.++|||||+|++++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFL 228 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 6888887765 79999999999999999873
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-12 Score=134.74 Aligned_cols=103 Identities=11% Similarity=0.071 Sum_probs=72.6
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCC-------cEEEEecC------CCC--CCCC
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP-------STLGVLGT------KRL--PYPS 277 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~-------~~~~v~d~------~~L--pfpd 277 (615)
..+|||||||+|..+..++.. .|+|+|+++.++..+.. .+.+.+.. +.+.+.+. ..+ ++++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~-~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNE-RYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHH-HHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 578999999999765544432 46777666666655543 22223332 45667765 322 3567
Q ss_pred CCceEEEecccccccc---cchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 278 RSFELAHCSRCRIDWL---QRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 278 ~sFDlV~~s~~~l~~~---~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++||+|+|.+ ++||. .+...+|+++.|+|||||+|++++|+.
T Consensus 128 ~~FD~V~~~~-~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 128 GKFNIIDWQF-AIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp SCEEEEEEES-CGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCeeEEEECc-hHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 8999999998 58875 345789999999999999999998763
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.3e-12 Score=123.92 Aligned_cols=126 Identities=17% Similarity=0.100 Sum_probs=89.6
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC------CCcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG------IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg------~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
.+|||||||+|.++..|+.. +..+.+.|+++.+++.|+++. .++.+.++|+..++ ++++||+|++.. ++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~-~l 142 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYV-FF 142 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEES-ST
T ss_pred CCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEECh-hh
Confidence 58999999999999999864 233444455556666665542 23788999988877 456999999988 68
Q ss_pred cccc--chHHHHHHHHhccCCCeEEEEEcCCCCCCC--hhHHHHHHHHHHHHhhcceEEEE
Q 007165 291 DWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYAHD--PENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 291 ~~~~--d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~--~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
++++ +...++.++.++|||||+|++...+..... ....-.-..+..+++..+|+.+.
T Consensus 143 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 143 CAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp TTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEE
Confidence 8887 778899999999999999998764321110 00000124566778888887664
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-12 Score=129.52 Aligned_cols=110 Identities=19% Similarity=0.177 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc----CCCcEE
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----GIPSTL 265 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er----g~~~~~ 265 (615)
..+.+.+.+.+. .++.+|||||||+|..+.++++. .++++ |+++.+++.|+++ +..+.+
T Consensus 47 ~~~m~~~a~~~~---------~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~i-----d~~~~~~~~a~~~~~~~~~~~~~ 112 (236)
T 3orh_A 47 TPYMHALAAAAS---------SKGGRVLEVGFGMAIAASKVQEAPIDEHWII-----ECNDGVFQRLRDWAPRQTHKVIP 112 (236)
T ss_dssp HHHHHHHHHHHT---------TTCEEEEEECCTTSHHHHHHTTSCEEEEEEE-----ECCHHHHHHHHHHGGGCSSEEEE
T ss_pred HHHHHHHHHhhc---------cCCCeEEEECCCccHHHHHHHHhCCcEEEEE-----eCCHHHHHHHHHHHhhCCCceEE
Confidence 445556666554 34578999999999999999865 34555 5555555665543 556777
Q ss_pred EEecCCCC--CCCCCCceEEEe-----cccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 266 GVLGTKRL--PYPSRSFELAHC-----SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 266 ~v~d~~~L--pfpd~sFDlV~~-----s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
..++++.+ ++++++||.|++ .. .+++..+...++.++.|+|||||+|++..
T Consensus 113 ~~~~a~~~~~~~~~~~FD~i~~D~~~~~~-~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 113 LKGLWEDVAPTLPDGHFDGILYDTYPLSE-ETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EESCHHHHGGGSCTTCEEEEEECCCCCBG-GGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred EeehHHhhcccccccCCceEEEeeeeccc-chhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 77775543 578899999974 33 46677888999999999999999999853
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=117.39 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=70.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcC-CCcEEEEecCCCCC-CCCCCceEEEeccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP-YPSRSFELAHCSRCRI 290 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg-~~~~~~v~d~~~Lp-fpd~sFDlV~~s~~~l 290 (615)
+..+|||+|||+|.++..|++. +|+++|+++.++..+.. .+.+.+ .++.+...+...++ +.+++||+|+++...+
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~-~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQ-RLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL 100 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence 3478999999999999999865 56666666555544432 222334 35777776666643 4578999998763223
Q ss_pred cc--------ccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 291 DW--------LQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 291 ~~--------~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+. ..+...++.++.++|||||++++....
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 32 123356899999999999999998754
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.4e-12 Score=122.45 Aligned_cols=100 Identities=16% Similarity=0.299 Sum_probs=84.0
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC--CCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR--LPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~--Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+..+|||+|||+|.++..++.. +..+.+.|+++.+++.++++.. .+..+|... +++++++||+|++.. +++|
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~v~~~~-~l~~ 105 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFDCVIFGD-VLEH 105 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT---TCEEEEEESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEEEEEEES-CGGG
T ss_pred CCCcEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccCEEEECC-hhhh
Confidence 4578999999999999999876 3456666777888888876643 677788765 677889999999988 6999
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++++..++.++.++|+|||++++++|+.
T Consensus 106 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 133 (230)
T 3cc8_A 106 LFDPWAVIEKVKPYIKQNGVILASIPNV 133 (230)
T ss_dssp SSCHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 9999999999999999999999998765
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-13 Score=144.22 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=82.1
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEE---EEecCCCCCCCCCCceEEEecccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTL---GVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~---~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+..+|||||||+|.++..|++. +..+.+.|+++.+++.|++++.+... ...+...+++++++||+|++.+ +++
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~-vl~ 182 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAAN-TLC 182 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEES-CGG
T ss_pred CCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECC-hHH
Confidence 4578999999999999999876 33555667778888888888665332 2233555677789999999998 699
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|++++..+++++.|+|||||+|++.+|.
T Consensus 183 h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 183 HIPYVQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp GCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9999999999999999999999998875
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=120.99 Aligned_cols=102 Identities=19% Similarity=0.322 Sum_probs=77.4
Q ss_pred CeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc--
Q 007165 217 RNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL-- 293 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~-- 293 (615)
.+|||+|||+|.++..++.. .++++|+++..+..+. +.+...+.++.+..+|...++++ ++||+|++...+++|+
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~ 112 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQ-EKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQT 112 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCS
T ss_pred CeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHH-HhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCC
Confidence 68999999999999998875 4556655554443333 22222356788999999888876 8999999875357877
Q ss_pred -cchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 294 -QRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 294 -~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.+...+++++.++|||||.+++..++.
T Consensus 113 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 140 (243)
T 3d2l_A 113 EADVKQTFDSAARLLTDGGKLLFDVHSP 140 (243)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence 455679999999999999999987653
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=118.72 Aligned_cols=111 Identities=22% Similarity=0.304 Sum_probs=87.5
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+..+|||||||+|.++..+. ..++++|+++. .+.+.++|+..+++++++||+|++.. ++|+ .
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~-~ 128 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR-NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCL-SLMG-T 128 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC-SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEES-CCCS-S
T ss_pred CCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEeh-hccc-c
Confidence 34679999999999998885 57888888765 45678889988999999999999988 5775 7
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEee
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~ 349 (615)
++..++.++.++|+|||+++++++...... -..+..+++..++.++...
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~------~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEVSSRFED------VRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEECGGGCSC------HHHHHHHHHHTTEEEEEEE
T ss_pred CHHHHHHHHHHhCCCCeEEEEEEcCCCCCC------HHHHHHHHHHCCCEEEEEe
Confidence 888999999999999999999876532111 2455667777788776543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-12 Score=127.59 Aligned_cols=112 Identities=18% Similarity=0.166 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc----CCCcE
Q 007165 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----GIPST 264 (615)
Q Consensus 192 a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er----g~~~~ 264 (615)
...+...+.+.+. .+..+|||||||+|.++..++.. .|+++ |+++.+++.|+++ +.++.
T Consensus 46 ~~~~~~~l~~~~~---------~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gv-----D~s~~~l~~a~~~~~~~~~~v~ 111 (236)
T 1zx0_A 46 ETPYMHALAAAAS---------SKGGRVLEVGFGMAIAASKVQEAPIDEHWII-----ECNDGVFQRLRDWAPRQTHKVI 111 (236)
T ss_dssp GHHHHHHHHHHHT---------TTCEEEEEECCTTSHHHHHHHTSCEEEEEEE-----ECCHHHHHHHHHHGGGCSSEEE
T ss_pred HHHHHHHHHhhcC---------CCCCeEEEEeccCCHHHHHHHhcCCCeEEEE-----cCCHHHHHHHHHHHHhcCCCeE
Confidence 3445555555442 23468999999999999999764 34555 5555555655554 45688
Q ss_pred EEEecCCCC--CCCCCCceEEEe-cccc-cc--cccchHHHHHHHHhccCCCeEEEEEc
Q 007165 265 LGVLGTKRL--PYPSRSFELAHC-SRCR-ID--WLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 265 ~~v~d~~~L--pfpd~sFDlV~~-s~~~-l~--~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+.++|...+ ++++++||+|++ .+.. .+ +..+...++.++.|+|||||+|++..
T Consensus 112 ~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 112 PLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred EEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 889998887 899999999998 4421 11 12233468999999999999999865
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.9e-12 Score=122.51 Aligned_cols=99 Identities=21% Similarity=0.249 Sum_probs=80.0
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCC---CCCC-CCceEEEecccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL---PYPS-RSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~L---pfpd-~sFDlV~~s~~~l~ 291 (615)
..+|||||||+|.++..+++. +..+.+.|+++.+++.|+++ ....+...+...+ ++.. ++||+|+|+. +++
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~-~l~ 127 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDYDLICANF-ALL 127 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEES-CCC
T ss_pred CCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCccEEEECc-hhh
Confidence 378999999999999999876 33555667777888888877 4567777776555 5444 4599999988 577
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
..++..++.++.++|||||+|++++++.
T Consensus 128 -~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 128 -HQDIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp -SSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred -hhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 7888999999999999999999998765
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=121.91 Aligned_cols=103 Identities=19% Similarity=0.326 Sum_probs=77.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+..+|||+|||+|.++..|++. .|+++|+++.++..+. +.+.+.+.++.+.++|...++++ ++||+|+|..+.+++
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~ 118 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVAR-RKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhc
Confidence 3468999999999999999865 4556655554443333 22233466789999999888865 789999987545555
Q ss_pred cc--chHHHHHHHHhccCCCeEEEEEcCC
Q 007165 293 LQ--RDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 293 ~~--d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.. +...++.++.++|+|||.+++..|+
T Consensus 119 ~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 119 FDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 43 4567999999999999999998765
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.3e-12 Score=126.96 Aligned_cols=100 Identities=21% Similarity=0.284 Sum_probs=77.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCCC-CCCCceEEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPY-PSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lpf-pd~sFDlV~ 284 (615)
+..+|||||||+|.++..++.. .++++|+++. +++.|+++ +. ++.+.++|+..+++ ++++||+|+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 138 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEV-----SINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVIS 138 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHH-----HHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEE
Confidence 3468999999999988888753 4566655554 44444433 32 46888999998888 688999999
Q ss_pred eccccccc----ccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 285 CSRCRIDW----LQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 285 ~s~~~l~~----~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
|.. ++|| ..+...++.++.++|||||++++++|+.
T Consensus 139 ~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 139 SQF-SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp EES-CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ECc-hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 988 5776 4566789999999999999999998764
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=125.57 Aligned_cols=99 Identities=15% Similarity=0.262 Sum_probs=77.2
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
..+|||+|||+|.++..|+.. +|+++|+++..+..+. +.+...+.++.+.++|+..+++ +++||+|++.. +++|+
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~-~~~~~ 197 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLN-ETKEKENLNISTALYDINAANI-QENYDFIVSTV-VFMFL 197 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECS-SGGGS
T ss_pred CCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHcCCceEEEEeccccccc-cCCccEEEEcc-chhhC
Confidence 468999999999999999865 4556655555444333 2233346688999999988887 78999999988 68888
Q ss_pred cch--HHHHHHHHhccCCCeEEEEEc
Q 007165 294 QRD--GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 294 ~d~--~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++. ..++.++.++|+|||++++..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 198 NRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 544 589999999999999988765
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-11 Score=126.60 Aligned_cols=97 Identities=12% Similarity=0.179 Sum_probs=76.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCCCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lpfpd~sFDlV~~ 285 (615)
+..+|||||||+|.++..+++. .|+++|+ ++.+++.|+++ ++ .+.+..+|...+| ++||+|++
T Consensus 90 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~-----s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~ 161 (318)
T 2fk8_A 90 PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTL-----SKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVS 161 (318)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCEEEEEES-----CHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEE
T ss_pred CcCEEEEEcccchHHHHHHHHHCCCEEEEEEC-----CHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEE
Confidence 4578999999999999988854 4555554 55555555443 43 4788888887775 78999999
Q ss_pred cccccccc--cchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 SRCRIDWL--QRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 s~~~l~~~--~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.. +++|+ ++...++.++.++|||||++++.++..
T Consensus 162 ~~-~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 162 IE-AFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp ES-CGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred eC-hHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 88 68888 577889999999999999999988654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=115.88 Aligned_cols=135 Identities=16% Similarity=0.113 Sum_probs=89.6
Q ss_pred CCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHH
Q 007165 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQ 252 (615)
Q Consensus 176 g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~ 252 (615)
|..+..|. ..+........+.+.+.+.... ..+..+|||+|||+|.++..++.. .|+++|+++..+..+.
T Consensus 12 g~~l~~~~--~~~rp~~~~~~~~l~~~l~~~~-----~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~ 84 (189)
T 3p9n_A 12 GRRIAVPP--RGTRPTTDRVRESLFNIVTARR-----DLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIA 84 (189)
T ss_dssp TCEEECCS--CCC---CHHHHHHHHHHHHHHS-----CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred CcEecCCC--CCCccCcHHHHHHHHHHHHhcc-----CCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHH
Confidence 44455554 3344444555555555553210 023478999999999999877654 4677777666555444
Q ss_pred HHHHHHcCC-CcEEEEecCCCCC--CCCCCceEEEecccccccc-cchHHHHHHHHh--ccCCCeEEEEEcCC
Q 007165 253 IQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSRCRIDWL-QRDGILLLELDR--LLRPGGYFVYSSPE 319 (615)
Q Consensus 253 i~~A~erg~-~~~~~v~d~~~Lp--fpd~sFDlV~~s~~~l~~~-~d~~~~L~ei~R--vLkPGG~Lvis~P~ 319 (615)
.. +...+. ++.+.++|+..++ +++++||+|++.. .+++. ++...++.++.+ +|+|||.+++..+.
T Consensus 85 ~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~-p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 85 RN-IEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP-PYNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp HH-HHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC-CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred HH-HHHcCCCceEEEEccHHHHHhhccCCCccEEEECC-CCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 22 233344 6888999976653 4578999999876 46654 667889999999 99999999998754
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.22 E-value=8.4e-11 Score=114.63 Aligned_cols=123 Identities=13% Similarity=0.153 Sum_probs=86.0
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC--CCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp--fpd~sFDlV~~s~~ 288 (615)
..+|||||||+|.++..++.. +++++|+++..+..+.. .+...++ ++.+..+|+..++ +++++||+|++..
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~- 119 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALD-KVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF- 119 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES-
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHH-HHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC-
Confidence 467999999999999988753 56677666655544442 2233343 6889999988877 7788999999876
Q ss_pred cccccc--------chHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEe
Q 007165 289 RIDWLQ--------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (615)
Q Consensus 289 ~l~~~~--------d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~ 348 (615)
..+|.. ....++.++.++|+|||.|++.+... .....+..+++..+|.....
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~~~~~g~~~~~~ 179 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR--------GLFEYSLVSFSQYGMKLNGV 179 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH--------HHHHHHHHHHHHHTCEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH--------HHHHHHHHHHHHCCCeeeec
Confidence 344432 12579999999999999999976431 12344555566666766543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=109.77 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCC---cEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~---~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+.+ +.+...|... ++++++||+|++.. .
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~-~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~-~ 128 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKE-NIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP-P 128 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC-C
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHH-HHHHcCCCccceEEEECchhc-ccccCCceEEEECC-C
Confidence 3468999999999999998865 45555555544433332 22222443 7888888766 44568999999877 4
Q ss_pred ccc-ccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 290 IDW-LQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 290 l~~-~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+++ ..+...++.++.++|+|||.+++..+..
T Consensus 129 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 129 IRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp STTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred cccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 666 4556789999999999999999998654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-11 Score=125.60 Aligned_cols=105 Identities=18% Similarity=0.325 Sum_probs=76.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHH-------cCCCcEEEEecCCCCC----CC--CC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE-------RGIPSTLGVLGTKRLP----YP--SR 278 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~e-------rg~~~~~~v~d~~~Lp----fp--d~ 278 (615)
+..+|||||||+|.++..++.. .++++|+++.++..+....... ...++.+.++|...++ ++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 3468999999999999988854 4566665555444333222211 1125788999988876 54 45
Q ss_pred CceEEEecccccccc-c---chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 279 SFELAHCSRCRIDWL-Q---RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 279 sFDlV~~s~~~l~~~-~---d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+||+|+|+. ++||. . +...+|.++.++|||||+|++++++.
T Consensus 114 ~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 114 CFDICSCQF-VCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp CEEEEEEET-CGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CEEEEEEec-chhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 999999988 69887 3 34689999999999999999998764
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.19 E-value=8.6e-12 Score=126.07 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcC--C----------------------------
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--I---------------------------- 261 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg--~---------------------------- 261 (615)
++.+|||||||+|.++..++.. .|+++|+++.++..+.... ++.. .
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~-~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWL-KKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHH-HTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHH-hcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 4578999999999877665533 4777777766665443211 1110 0
Q ss_pred Cc-EEEEecCCC-CCCC---CCCceEEEecccccccc----cchHHHHHHHHhccCCCeEEEEEcC
Q 007165 262 PS-TLGVLGTKR-LPYP---SRSFELAHCSRCRIDWL----QRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 262 ~~-~~~v~d~~~-Lpfp---d~sFDlV~~s~~~l~~~----~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.+ .+.++|+.. .|++ .++||+|+++. ++||+ ++...++.++.|+|||||+|++++.
T Consensus 134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~-~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLL-AMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhheEEeccccCCCCCCccccCCCCEeeehH-HHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 12 277888766 3443 57999999999 47774 4556899999999999999999863
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-11 Score=122.21 Aligned_cols=97 Identities=25% Similarity=0.368 Sum_probs=80.0
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+..+|||||||+|.++..++... .+..+.+.|+++.+++.|++++.++.+.+.|...+|+++++||+|++... .
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-~---- 158 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA-P---- 158 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC-C----
T ss_pred CCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC-h----
Confidence 34689999999999999998751 23455666777888888888888889999999999999999999998663 2
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
..+.++.|+|||||.+++.+|..
T Consensus 159 ---~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ---CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ---CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ---hhHHHHHHhcCCCcEEEEEEcCH
Confidence 25899999999999999998764
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-11 Score=126.54 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=69.0
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhchhHHHHHHHHHc---------------------CC---------
Q 007165 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER---------------------GI--------- 261 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~---~~V~gvdis~~Dls~a~i~~A~er---------------------g~--------- 261 (615)
+..+|||||||+|.++..++. ..|+++|+++.++ +.|+++ +.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l-----~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNR-----QELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 145 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHH-----HHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHH-----HHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHH
Confidence 457899999999985543332 2566776655544 433331 10
Q ss_pred -----CcEEEEecCCC-CCC-----CCCCceEEEeccccccc----ccchHHHHHHHHhccCCCeEEEEEc
Q 007165 262 -----PSTLGVLGTKR-LPY-----PSRSFELAHCSRCRIDW----LQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 262 -----~~~~~v~d~~~-Lpf-----pd~sFDlV~~s~~~l~~----~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
...+..+|+.. +|+ ++++||+|+|+. +++| .+++..+|.++.|+|||||+|+++.
T Consensus 146 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 146 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAF-CLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHhhhceEEecccCCCCCccccccCCCCCCEEEehh-hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 13456668776 664 346799999998 5888 6678899999999999999999974
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.18 E-value=6.8e-11 Score=115.97 Aligned_cols=121 Identities=11% Similarity=0.159 Sum_probs=82.6
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC--CCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp--fpd~sFDlV~~s~~ 288 (615)
..+|||||||+|.++..|+.. +++|+|+++..+..+. +.+.+.++ ++.+..+|+..++ +++++||.|++.+.
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~-~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV-QKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHH-HHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 367999999999999998753 4667766665554443 22333354 5888999988776 77899999987652
Q ss_pred ccccccc--------hHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 289 RIDWLQR--------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 289 ~l~~~~d--------~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
.+|... ...++.++.++|||||.|++.+... .....+...+....|...
T Consensus 118 -~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~--------~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 118 -DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR--------GLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp -CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH--------HHHHHHHHHHHHHTCEEE
T ss_pred -CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCccc
Confidence 444322 2568999999999999999987432 112334444445566554
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.2e-11 Score=123.91 Aligned_cols=99 Identities=18% Similarity=0.310 Sum_probs=74.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcC------------------------------
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG------------------------------ 260 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg------------------------------ 260 (615)
...+|||||||+|.++..|+.. .|+|+| +++.+++.|+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvD-----is~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLD-----IDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTV 120 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEE-----SCHHHHHHHHHTC------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEEC-----CCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 3578999999999999998864 455554 5555555555431
Q ss_pred ---------------------------------CCcEEEEecCCCCC-----CCCCCceEEEeccccccccc------ch
Q 007165 261 ---------------------------------IPSTLGVLGTKRLP-----YPSRSFELAHCSRCRIDWLQ------RD 296 (615)
Q Consensus 261 ---------------------------------~~~~~~v~d~~~Lp-----fpd~sFDlV~~s~~~l~~~~------d~ 296 (615)
.++.+..+|....+ +.+++||+|+|.. +++|+. +.
T Consensus 121 ~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~-vl~~ihl~~~~~~~ 199 (292)
T 3g07_A 121 RKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLS-LTKWVHLNWGDEGL 199 (292)
T ss_dssp ---------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEES-CHHHHHHHHHHHHH
T ss_pred cccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEECh-HHHHhhhcCCHHHH
Confidence 25778888866543 5678999999988 577764 56
Q ss_pred HHHHHHHHhccCCCeEEEEEcCC
Q 007165 297 GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 297 ~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
..+++++.++|||||+|++...+
T Consensus 200 ~~~l~~~~~~LkpGG~lil~~~~ 222 (292)
T 3g07_A 200 KRMFRRIYRHLRPGGILVLEPQP 222 (292)
T ss_dssp HHHHHHHHHHEEEEEEEEEECCC
T ss_pred HHHHHHHHHHhCCCcEEEEecCC
Confidence 77999999999999999997644
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-10 Score=111.71 Aligned_cols=117 Identities=17% Similarity=0.139 Sum_probs=81.4
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
..+|||+|||+|.++..++.. .++++|+++..+..+. +.+...+.. +.+..+|.... .+++||+|++.. .++
T Consensus 61 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~~~-~~~ 136 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAE-ENAALNGIYDIALQKTSLLAD--VDGKFDLIVANI-LAE 136 (205)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCCCEEEESSTTTT--CCSCEEEEEEES-CHH
T ss_pred CCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEecccccc--CCCCceEEEECC-cHH
Confidence 468999999999999998864 4566665555443333 222233544 78888887654 458999999876 455
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
+ ...++.++.++|+|||+++++..... ....+..++++.++....
T Consensus 137 ~---~~~~l~~~~~~L~~gG~l~~~~~~~~--------~~~~~~~~~~~~Gf~~~~ 181 (205)
T 3grz_A 137 I---LLDLIPQLDSHLNEDGQVIFSGIDYL--------QLPKIEQALAENSFQIDL 181 (205)
T ss_dssp H---HHHHGGGSGGGEEEEEEEEEEEEEGG--------GHHHHHHHHHHTTEEEEE
T ss_pred H---HHHHHHHHHHhcCCCCEEEEEecCcc--------cHHHHHHHHHHcCCceEE
Confidence 4 46789999999999999999764321 134455666677777654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.17 E-value=8e-10 Score=106.58 Aligned_cols=119 Identities=13% Similarity=0.013 Sum_probs=82.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||+|||+|.++..++.. +|+++|+++..+..+... +...+. ++.+..+|........++||+|++.. .
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~-~ 117 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDN-LKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGG-S 117 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHH-HHHHTCTTEEEEECCTTTTCTTSCCCSEEEESC-C
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCcEEEEeCChhhhhhcCCCCCEEEECC-C
Confidence 3478999999999999988754 466666655554444322 222343 57888888755543447899999876 3
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
++ +...++.++.++|||||++++..+.. .....+...+++.+|...
T Consensus 118 ~~---~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~l~~~g~~~~ 163 (204)
T 3e05_A 118 GG---MLEEIIDAVDRRLKSEGVIVLNAVTL--------DTLTKAVEFLEDHGYMVE 163 (204)
T ss_dssp TT---CHHHHHHHHHHHCCTTCEEEEEECBH--------HHHHHHHHHHHHTTCEEE
T ss_pred Cc---CHHHHHHHHHHhcCCCeEEEEEeccc--------ccHHHHHHHHHHCCCcee
Confidence 43 67889999999999999999987542 223455566667777433
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=134.19 Aligned_cols=104 Identities=17% Similarity=0.242 Sum_probs=79.9
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----------C-CCcEEEEecCCCCCCCCCCceEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----------G-IPSTLGVLGTKRLPYPSRSFELA 283 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----------g-~~~~~~v~d~~~Lpfpd~sFDlV 283 (615)
+..+|||||||+|.++..|+...-....+.+.|+++.+++.|+++ + .++.+.++|+..+++++++||+|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 347899999999999999986520112333445555555555441 2 35889999999999999999999
Q ss_pred EecccccccccchH--HHHHHHHhccCCCeEEEEEcCCC
Q 007165 284 HCSRCRIDWLQRDG--ILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 284 ~~s~~~l~~~~d~~--~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+|.. +++|++++. .++.++.|+|||| .+++++|+.
T Consensus 801 V~~e-VLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 801 TCLE-VIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EEES-CGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred EEeC-chhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 9988 699998765 5899999999999 888888764
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=111.17 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=74.0
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCC-CCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP-YPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lp-fpd~sFDlV~~s~ 287 (615)
..+|||+|||+|.++..++.. .++++|+++..+..+. +.+.+.+. ++.+..+|+..++ +.+++||+|++..
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTT-KKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHH-HHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 468999999999999888754 5667766665554443 22233344 5788889987776 6668999999775
Q ss_pred cccc--------cccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 CRID--------WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~~l~--------~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
..+. ...+...++.++.++|||||++++....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 102 GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 3211 1123456999999999999999998744
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.9e-11 Score=127.93 Aligned_cols=104 Identities=17% Similarity=0.163 Sum_probs=79.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+..+|||+|||+|.++..++.. +|+++|+++..+..+. +.+...++++.+...|....+.++++||+|+|+. .+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~-~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~np-p~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQ-KGLEANALKAQALHSDVDEALTEEARFDIIVTNP-PFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHH-HHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECC-CCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEcchhhccccCCCeEEEEECC-chhh
Confidence 3468999999999999999875 4556655554443333 2223346678999999988887778999999876 5776
Q ss_pred -----ccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 293 -----LQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 293 -----~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
..+...++.++.++|||||.++++....
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 4556789999999999999999987654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-11 Score=119.23 Aligned_cols=90 Identities=22% Similarity=0.303 Sum_probs=75.5
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecC-CCCCCC-CCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPYP-SRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~-~~Lpfp-d~sFDlV~~s~~~l~~~ 293 (615)
..+|||||||+|.++..+++. +..+.+.|+++.+++.|+++..++.+.++|. ..+|++ +++||+|+++
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------- 118 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------- 118 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-------
T ss_pred CCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-------
Confidence 468999999999999999875 3355555777778888888877889999998 678888 8999999976
Q ss_pred cchHHHHHHHHhccCCCeEEEE
Q 007165 294 QRDGILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvi 315 (615)
.++..++.++.++|||||.|+.
T Consensus 119 ~~~~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 119 RGPTSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp SCCSGGGGGHHHHEEEEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCcEEEE
Confidence 3566789999999999999993
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=116.77 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=79.1
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChh------chhHHHHHHHHHcCC--CcEEEEec---CCCCCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPN------DVHENQIQFALERGI--PSTLGVLG---TKRLPYPSR 278 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~------Dls~a~i~~A~erg~--~~~~~v~d---~~~Lpfpd~ 278 (615)
+..+|||||||+|.++..+++ ..|+++|+++. ++..+. +.....+. ++.+..+| ...+|++++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 121 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAW-NHLLAGPLGDRLTVHFNTNLSDDLGPIADQ 121 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHH-HHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHH-HHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence 347899999999999988874 36778888775 444333 22333343 57888887 556778889
Q ss_pred CceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 279 sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+||+|++.. +++|++++..+++.+.++++|||++++.+...
T Consensus 122 ~fD~v~~~~-~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 122 HFDRVVLAH-SLWYFASANALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp CCSEEEEES-CGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred CEEEEEEcc-chhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 999999988 58999988887778888888899999987543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-11 Score=120.14 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=77.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcC--CCcEEEEecCCCCCCCC-----CCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPS-----RSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v~d~~~Lpfpd-----~sFDlV~~ 285 (615)
+..+|||||||+|.++..|++. +|+++ |+++.+++.|+++. .++.+.++|+..+++.. ..||+|++
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~~v~gv-----D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~ 130 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFPRVIGL-----DVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYM 130 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSSCEEEE-----ESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCCCEEEE-----ECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEE
Confidence 3467999999999999999865 45555 55566666666653 36888999988765432 34999998
Q ss_pred ccccccccc--chHHHHHHHHhccCCCeEEEEEcCC
Q 007165 286 SRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 286 s~~~l~~~~--d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.. ++|+++ +...++.++.++|||||++++.+..
T Consensus 131 ~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 131 RT-GFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp ES-SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred cc-hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 88 688888 6788999999999999999988754
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.9e-11 Score=120.38 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=73.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcC--CC---------------------------
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IP--------------------------- 262 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg--~~--------------------------- 262 (615)
++.+|||||||+|.++..++.. .|+++|+ ++.+++.|+++. .+
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~-----s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDY-----TDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE 130 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTEEEEEEEES-----CHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhcccCeEEEecC-----CHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence 4578999999999998888754 4555555 455555554431 11
Q ss_pred -----c-EEEEecCCCCC-CCC---CCceEEEecccccc----cccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 263 -----S-TLGVLGTKRLP-YPS---RSFELAHCSRCRID----WLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 263 -----~-~~~v~d~~~Lp-fpd---~sFDlV~~s~~~l~----~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+ .+.++|+...+ +++ ++||+|+|.. +++ +.++...++.++.++|||||+|+++++
T Consensus 131 ~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 131 KLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTL-CLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HhhhhheeEEEeeeccCCCCCccccCCccEEEEhh-hhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 5 78888877654 355 8999999988 577 556778899999999999999999874
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-10 Score=106.03 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=67.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----CCC--cEEEEecC-CCCCCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIP--STLGVLGT-KRLPYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g~~--~~~~v~d~-~~Lpfpd~sFDlV~~s~ 287 (615)
+..+|||+|||+|.++..++... .+..+.+.|+++.+++.|+++ +.+ + +...|. +.++..+++||+|++..
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~ 102 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGG 102 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECC
Confidence 34689999999999999987651 122333334444555555433 443 5 666665 33443338999999887
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+++ ..++.++.++|||||++++....
T Consensus 103 -~~~~----~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 103 -GLTA----PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp --TTC----TTHHHHHHHTCCTTCEEEEEECS
T ss_pred -cccH----HHHHHHHHHhcCCCCEEEEEeec
Confidence 4665 56999999999999999998754
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=114.65 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC----CCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~----~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~----Lpfpd~sFDlV~~s 286 (615)
++.+|||+|||+|.++..+++ ..|+|+|+++.++. .+.+.|+++ .++.+.++|+.. .+++ ++||+|+|.
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~-~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFE-KLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHH-HHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHH-HHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 456899999999999988875 35778877776543 234555554 356777777765 3555 899999976
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
. .+ ..+...++.++.|+|||||+|+++.
T Consensus 134 ~--~~-~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 134 I--AQ-KNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp C--CS-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c--cC-hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3 22 2233456999999999999999985
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-10 Score=111.07 Aligned_cols=124 Identities=13% Similarity=0.080 Sum_probs=84.1
Q ss_pred CCCeEEEECCC-CchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCC-CCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCG-VASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~L-pfpd~sFDlV~~s~~~ 289 (615)
+..+|||+||| +|.++..++.. .|+++|+++..+..+. +.+...+.++.+.++|...+ ++++++||+|++.. .
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np-p 132 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYAR-RNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP-P 132 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHH-HHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC-C
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC-C
Confidence 35789999999 99999888754 5667766665554443 23334466889999986433 46678999999874 2
Q ss_pred cccccc-------------------hHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 290 IDWLQR-------------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 290 l~~~~d-------------------~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
+++..+ ...++.++.++|||||++++..+... .....+..++++..|.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------~~~~~~~~~l~~~g~~~~~ 202 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-------KLLNVIKERGIKLGYSVKD 202 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-------HHHHHHHHHHHHTTCEEEE
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-------hHHHHHHHHHHHcCCceEE
Confidence 333222 36789999999999999999875431 1234455666666775543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.11 E-value=7e-10 Score=108.11 Aligned_cols=98 Identities=14% Similarity=0.006 Sum_probs=70.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
+..+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..++ ++.+..+|+........+||+|++.. .+
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~-~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~-~~ 132 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQ-KNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGG-GG 132 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECS-CC
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHH-HHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECC-cc
Confidence 3478999999999999988865 4566655554443333 22233355 47888899877332336799999766 23
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+.. ++.++.++|||||+++++...
T Consensus 133 ----~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 133 ----SQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp ----CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred ----cHH-HHHHHHHhcCCCcEEEEEecC
Confidence 455 999999999999999998754
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.9e-10 Score=102.89 Aligned_cols=134 Identities=12% Similarity=0.064 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEec
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLG 269 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d 269 (615)
......+.+.+.. .+..+|||+|||+|.++..++.. .++++|+++..+..+. +.+...+. ++.+..+|
T Consensus 21 ~~~~~~~~~~~~~--------~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~~~~~~d 91 (183)
T 2yxd_A 21 EEIRAVSIGKLNL--------NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTK-QNLAKFNIKNCQIIKGR 91 (183)
T ss_dssp HHHHHHHHHHHCC--------CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHH-HHHHHTTCCSEEEEESC
T ss_pred HHHHHHHHHHcCC--------CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHH-HHHHHcCCCcEEEEECC
Confidence 4455555555542 23468999999999999999863 4556655554443333 22222343 57888888
Q ss_pred CCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEee
Q 007165 270 TKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (615)
Q Consensus 270 ~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~ 349 (615)
... ++++++||+|++... .+...++.++.++ |||.+++..+.. .....+...++..+|.+....
T Consensus 92 ~~~-~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~~~--------~~~~~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 92 AED-VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTIVL--------ENAAKIINEFESRGYNVDAVN 155 (183)
T ss_dssp HHH-HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEESCH--------HHHHHHHHHHHHTTCEEEEEE
T ss_pred ccc-cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEeccc--------ccHHHHHHHHHHcCCeEEEEE
Confidence 766 667789999998873 5677899999999 999999988643 123445566666667666544
Q ss_pred Cc
Q 007165 350 DQ 351 (615)
Q Consensus 350 ~~ 351 (615)
..
T Consensus 156 ~~ 157 (183)
T 2yxd_A 156 VF 157 (183)
T ss_dssp EE
T ss_pred ee
Confidence 33
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.9e-11 Score=117.96 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=75.4
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCC-C--CCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P--YPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~L-p--fpd~sFDlV~~s~ 287 (615)
..+|||||||+|.++..++.. .|+|+|+++..+..+. +.+.+.++ ++.+..+|+..+ + +++++||.|++.+
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~-~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACL-ASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 468999999999999998853 4777877776665544 33334454 588888887664 3 7789999999875
Q ss_pred cccccccch--------HHHHHHHHhccCCCeEEEEEcC
Q 007165 288 CRIDWLQRD--------GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 288 ~~l~~~~d~--------~~~L~ei~RvLkPGG~Lvis~P 318 (615)
...|.... ..++.++.|+|||||+|++++.
T Consensus 114 -~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 -PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp -CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 35554322 2599999999999999999874
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.5e-10 Score=118.38 Aligned_cols=99 Identities=8% Similarity=0.097 Sum_probs=71.9
Q ss_pred CCCCeEEEECCCCchHHHHH-h---cCCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 214 GNIRNVLDVGCGVASFGAYL-L---SHDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L-~---~~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
.++.+|||||||+|.++..+ + +.+|+++|+++.++..+... +.+.|. ++.+.++|+..++ +++||+|++..
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~-~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a- 196 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKV-IEGLGVDGVNVITGDETVID--GLEFDVLMVAA- 196 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHH-HHHHTCCSEEEEESCGGGGG--GCCCSEEEECT-
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHH-HHhcCCCCeEEEECchhhCC--CCCcCEEEECC-
Confidence 45688999999999776544 3 23566666655555444422 222354 6889999988775 68999999754
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
. .++...++.++.|+|||||+|++....
T Consensus 197 ~---~~d~~~~l~el~r~LkPGG~Lvv~~~~ 224 (298)
T 3fpf_A 197 L---AEPKRRVFRNIHRYVDTETRIIYRTYT 224 (298)
T ss_dssp T---CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred C---ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence 2 578889999999999999999997643
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-10 Score=111.53 Aligned_cols=131 Identities=18% Similarity=0.157 Sum_probs=88.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHH----HcCC-CcEEEEecCCCCCCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL----ERGI-PSTLGVLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~----erg~-~~~~~v~d~~~Lpfpd~sFDlV~~ 285 (615)
+..+|||||||+|.++..|+.. +|+++|+++.++.... +.|+ ..+. ++.+.++|+..+|+++++ |.|+.
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~-~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKIS-AKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHH-HHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 3468999999999999998754 6788888877665332 2232 2333 688999999999998777 87763
Q ss_pred cc--ccc--ccccchHHHHHHHHhccCCCeEEEEEcCCC-CC-CC--------hhHHHHHHHHHHHHhhcceEEEE
Q 007165 286 SR--CRI--DWLQRDGILLLELDRLLRPGGYFVYSSPEA-YA-HD--------PENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 286 s~--~~l--~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~-~~-~~--------~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
.. +.. +|++++..++.++.|+|||||.|+++.... +. .. ......-+.+..++....|.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 22 122 366777889999999999999999965211 10 00 00111223366777888887764
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-10 Score=110.46 Aligned_cols=97 Identities=13% Similarity=0.053 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+..+|||||||+|.++..+++. +|+++|+++..+..+... ....+. ++.+..+|....+.++++||+|++.. .++
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~-~~~ 154 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRR-LKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTA-APP 154 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEESCGGGCCGGGCCEEEEEESS-BCS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHH-HHHcCCCceEEEECCcccCCccCCCccEEEEcc-chh
Confidence 4578999999999999988864 556665555444333322 222243 57888899877766678999999887 577
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++++ ++.++|||||+++++.++
T Consensus 155 ~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 155 EIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp SCCT------HHHHTEEEEEEEEEEECS
T ss_pred hhhH------HHHHhcccCcEEEEEEcC
Confidence 7764 689999999999999876
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.08 E-value=3.5e-10 Score=112.43 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=82.3
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCC---CCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP---SRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfp---d~sFDlV~~s~ 287 (615)
..+|||||||+|.++..|+. ..|+++|+++.++..+. +.+...++ ++.+..+|+..++++ +++||+|+|..
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLE-KLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHH-HHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence 46899999999999888873 25667766655544433 22233354 588899998777764 68999999765
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
..+...++.++.++|||||+|++...... .+ ....+...++...+.+.
T Consensus 150 -----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~---~~---~~~~~~~~l~~~g~~~~ 197 (240)
T 1xdz_A 150 -----VARLSVLSELCLPLVKKNGLFVALKAASA---EE---ELNAGKKAITTLGGELE 197 (240)
T ss_dssp -----CSCHHHHHHHHGGGEEEEEEEEEEECC-C---HH---HHHHHHHHHHHTTEEEE
T ss_pred -----cCCHHHHHHHHHHhcCCCCEEEEEeCCCc---hH---HHHHHHHHHHHcCCeEe
Confidence 25678899999999999999998753321 11 22344555666667654
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-10 Score=120.88 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=77.4
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEeccc--
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRC-- 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~-- 288 (615)
..+|||||||+|.++..++++ +|+++|+++ ++..+. +.+...+.. +.+..+|+..+++++++||+|++...
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAV-KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHH-HHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence 468999999999999998865 677888773 444333 444455554 89999999999999999999998542
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEE
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
.+++..+...++.++.|+|||||+++..
T Consensus 145 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 145 CLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 2444567788999999999999999843
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=109.00 Aligned_cols=86 Identities=19% Similarity=0.154 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC-CCcEEEEecCCCCCC---CCCCceEEEeccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPY---PSRSFELAHCSRCRI 290 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg-~~~~~~v~d~~~Lpf---pd~sFDlV~~s~~~l 290 (615)
++.+|||||||. + + .|+++.|++.|+++. .++.+.++|+..+++ ++++||+|+|+. ++
T Consensus 12 ~g~~vL~~~~g~-----------v-~-----vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~-~l 73 (176)
T 2ld4_A 12 AGQFVAVVWDKS-----------S-P-----VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGL-VP 73 (176)
T ss_dssp TTSEEEEEECTT-----------S-C-----HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECC-ST
T ss_pred CCCEEEEecCCc-----------e-e-----eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECC-hh
Confidence 457899999996 1 1 477888888888764 258899999988887 889999999988 69
Q ss_pred ccc-cchHHHHHHHHhccCCCeEEEEEcC
Q 007165 291 DWL-QRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 291 ~~~-~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
||+ ++...++++++|+|||||+|++..|
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 998 8999999999999999999999765
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=116.58 Aligned_cols=100 Identities=13% Similarity=0.019 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCC-----CCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY-----PSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpf-----pd~sFDlV~~s~~~ 289 (615)
+..+|||||||+|.++..|+++ +..+.+.|+++.|++.|+++.... +...+...++. .+++||+|+++. +
T Consensus 45 ~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~~~~~fD~Vv~~~-~ 119 (261)
T 3iv6_A 45 PGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAEIPKELAGHFDFVLNDR-L 119 (261)
T ss_dssp TTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGGGTTCCSEEEEES-C
T ss_pred CcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc-cceeeeeecccccccccCCCccEEEEhh-h
Confidence 4578999999999999999875 234455566777777777664322 22333333332 257899999988 5
Q ss_pred ccccc--chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 290 IDWLQ--RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 290 l~~~~--d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++|+. +...++.++.++| |||.++++.+..
T Consensus 120 l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 120 INRFTTEEARRACLGMLSLV-GSGTVRASVKLG 151 (261)
T ss_dssp GGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred hHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence 77653 3466999999999 999999998643
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.8e-10 Score=116.90 Aligned_cols=124 Identities=12% Similarity=0.150 Sum_probs=83.1
Q ss_pred CCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCch----HHHHHhcC-C-Cc-cccCChhchhHHHHHHHH
Q 007165 185 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVAS----FGAYLLSH-D-II-AMSLAPNDVHENQIQFAL 257 (615)
Q Consensus 185 g~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~----~a~~L~~~-~-V~-gvdis~~Dls~a~i~~A~ 257 (615)
.+.|.+....+......+++. .+..+|||+|||+|. ++..|++. . .. +..+.+.|+++.+++.|+
T Consensus 83 ~t~FfRd~~~f~~l~~~llp~--------~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar 154 (274)
T 1af7_A 83 LTAFFREAHHFPILAEHARRR--------HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKAR 154 (274)
T ss_dssp CCCTTTTTTHHHHHHHHHHHS--------CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHH
T ss_pred CccccCChHHHHHHHHHccCC--------CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHH
Confidence 344555445454443444542 123689999999997 55555432 1 00 234555566666667766
Q ss_pred HcC------------------------------------CCcEEEEecCCCCCCC-CCCceEEEecccccccccch--HH
Q 007165 258 ERG------------------------------------IPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQRD--GI 298 (615)
Q Consensus 258 erg------------------------------------~~~~~~v~d~~~Lpfp-d~sFDlV~~s~~~l~~~~d~--~~ 298 (615)
+.- ..+.|.+.|....|++ .++||+|+|.+ +++|+++. .+
T Consensus 155 ~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crn-vliyf~~~~~~~ 233 (274)
T 1af7_A 155 SGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRN-VMIYFDKTTQED 233 (274)
T ss_dssp HTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECS-SGGGSCHHHHHH
T ss_pred hcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECC-chHhCCHHHHHH
Confidence 531 1467888888776665 57899999998 67877665 67
Q ss_pred HHHHHHhccCCCeEEEEEc
Q 007165 299 LLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 299 ~L~ei~RvLkPGG~Lvis~ 317 (615)
++.++.++|+|||+|++..
T Consensus 234 vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 234 ILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp HHHHHGGGEEEEEEEEECT
T ss_pred HHHHHHHHhCCCcEEEEEe
Confidence 9999999999999999854
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-10 Score=106.20 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--------CCCCCce
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--------fpd~sFD 281 (615)
+..+|||+|||+|.++..++.. .++++|+++ .... .++.+..+|....+ +++++||
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCcee
Confidence 3468999999999999888643 567777766 4321 45788888888776 7778999
Q ss_pred EEEecccccccccch-----------HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 282 LAHCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 282 lV~~s~~~l~~~~d~-----------~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+|++.. .+++..+. ..++.++.++|+|||.++++.+..
T Consensus 91 ~i~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 91 VVMSDM-APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp EEEECC-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred EEEECC-CccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 999876 46666544 678999999999999999987643
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.05 E-value=4e-10 Score=106.50 Aligned_cols=113 Identities=12% Similarity=0.034 Sum_probs=82.1
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d 295 (615)
..+|||+|||+|.++..++... .+.+.|+++.+++. ..++.+.++|+.. ++++++||+|+++. .+++.++
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~-~~~~~~~ 93 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES----HRGGNLVRADLLC-SINQESVDVVVFNP-PYVPDTD 93 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECC-CCBTTCC
T ss_pred CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc----ccCCeEEECChhh-hcccCCCCEEEECC-CCccCCc
Confidence 3589999999999999998762 44555666666555 4467888999876 66778999999876 4665444
Q ss_pred h---------HHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 296 D---------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 296 ~---------~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
. ..++.++.+.| |||.+++..+... .-..+..+++...|....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~--------~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 94 DPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN--------RPKEVLARLEERGYGTRI 145 (170)
T ss_dssp CTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG--------CHHHHHHHHHHTTCEEEE
T ss_pred cccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC--------CHHHHHHHHHHCCCcEEE
Confidence 3 56889999999 9999999875431 123455666676776543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.04 E-value=2e-10 Score=111.58 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=72.6
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCCCC--CCCCC-ceEEEec
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLP--YPSRS-FELAHCS 286 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~Lp--fpd~s-FDlV~~s 286 (615)
..+|||+|||+|.++..++.. .|+++|+++.++..+.. .+...++ ++.+..+|+..+. +++++ ||+|++.
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKK-NLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHH-HHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHH-HHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 368999999999999886643 46677666655544442 2233454 6788888866543 23678 9999987
Q ss_pred ccccccccchHHHHHHH--HhccCCCeEEEEEcCCC
Q 007165 287 RCRIDWLQRDGILLLEL--DRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei--~RvLkPGG~Lvis~P~~ 320 (615)
.. ++ ..+...++.++ .++|+|||.++++....
T Consensus 133 ~~-~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PP-FH-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CC-SS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CC-CC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 63 44 45567788888 77899999999987554
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.1e-10 Score=113.89 Aligned_cols=154 Identities=12% Similarity=0.106 Sum_probs=100.2
Q ss_pred cCCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHH
Q 007165 175 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHEN 251 (615)
Q Consensus 175 ~g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a 251 (615)
.|-.|.+.-....|..........+.+.+. ++.+|||+|||+|.++..++.. .|+++|+++..+..+
T Consensus 95 ~g~~f~~d~~~~~f~~~~~~~~~~l~~~~~----------~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a 164 (278)
T 2frn_A 95 NGIKYKLDVAKIMFSPANVKERVRMAKVAK----------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFL 164 (278)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHHHHHHHCC----------TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHH
T ss_pred CCEEEEEEccceeEcCCcHHHHHHHHHhCC----------CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 344455543445555554444444444432 3478999999999999998753 377887777666554
Q ss_pred HHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHH
Q 007165 252 QIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRR 329 (615)
Q Consensus 252 ~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~ 329 (615)
. +.+...++. +.+..+|+..++. +++||+|++.. ......++.++.++|||||++++.+....... ...
T Consensus 165 ~-~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~-----p~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~ 235 (278)
T 2frn_A 165 V-ENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY-----VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLM--PRE 235 (278)
T ss_dssp H-HHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC-----CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT--TTT
T ss_pred H-HHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECC-----chhHHHHHHHHHHHCCCCeEEEEEEeeccccc--ccc
Confidence 4 333334543 7789999888876 68999999753 23345689999999999999999764321000 011
Q ss_pred HHHHHHHHHhhcceEEEE
Q 007165 330 IWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 330 ~w~~l~~La~~l~W~l~~ 347 (615)
..+.+...++..+|.+..
T Consensus 236 ~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 236 PFETFKRITKEYGYDVEK 253 (278)
T ss_dssp THHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCeeEE
Confidence 234556777777777654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.7e-10 Score=113.10 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=73.7
Q ss_pred CCeEEEECCCC---chHHHHHhc----CCCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCC-----------
Q 007165 216 IRNVLDVGCGV---ASFGAYLLS----HDIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLP----------- 274 (615)
Q Consensus 216 ~~~VLDIGCGt---G~~a~~L~~----~~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lp----------- 274 (615)
..+|||||||+ |.++..+.. .+|+++|+++ .+++.|+++ ..++.+..+|+...+
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp-----~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 152 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDP-----MVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRM 152 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSH-----HHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECCh-----HHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhcc
Confidence 47899999999 988766543 3566665554 444555443 246788999976421
Q ss_pred CCCCCceEEEecccccccccc--hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 275 YPSRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 275 fpd~sFDlV~~s~~~l~~~~d--~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++..+||+|++.. ++||+++ ...+|+++.++|+|||+|++++...
T Consensus 153 ~d~~~~d~v~~~~-vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 153 IDFSRPAAIMLVG-MLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp CCTTSCCEEEETT-TGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCCCCEEEEEec-hhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 3335899999887 6999887 6889999999999999999988543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-10 Score=114.04 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=71.2
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHH-----HcC-CCcEEEEecCCC-CC--CCCCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL-----ERG-IPSTLGVLGTKR-LP--YPSRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~-----erg-~~~~~~v~d~~~-Lp--fpd~sFDl 282 (615)
..+|||||||+|.++..|+.. .++|+|+++.++..+...... ..+ .++.+..+|+.. ++ +++++||.
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~ 126 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK 126 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence 467999999999999999864 466676665555444322111 022 358899999876 66 78899999
Q ss_pred EEecccccccccc--------hHHHHHHHHhccCCCeEEEEEcC
Q 007165 283 AHCSRCRIDWLQR--------DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 283 V~~s~~~l~~~~d--------~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
|++.+ ..+|... ...++.++.++|||||.|++.+.
T Consensus 127 v~~~~-~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 127 MFFLF-PDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEES-CC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEeC-CCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 98655 2333221 13699999999999999999774
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.7e-10 Score=106.43 Aligned_cols=134 Identities=13% Similarity=0.041 Sum_probs=87.4
Q ss_pred CCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHH
Q 007165 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQ 252 (615)
Q Consensus 176 g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~ 252 (615)
+..+.++.+. .+......+.+.+.+.+... .+..+|||+|||+|.++..++.. +|+++|+++..+..+.
T Consensus 13 ~~~~~~~~~~-~~rp~~~~~~~~~~~~l~~~-------~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~ 84 (187)
T 2fhp_A 13 GRRLKALDGD-NTRPTTDKVKESIFNMIGPY-------FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIK 84 (187)
T ss_dssp TCBCCCCCCC-SSCCCCHHHHHHHHHHHCSC-------CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CccccCCCCC-CcCcCHHHHHHHHHHHHHhh-------cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 3345555432 44555666777776666411 23468999999999999887653 4667766665554443
Q ss_pred HHHHHHcCC--CcEEEEecCCCC----CCCCCCceEEEecccccccccchHHHHHHH--HhccCCCeEEEEEcCCC
Q 007165 253 IQFALERGI--PSTLGVLGTKRL----PYPSRSFELAHCSRCRIDWLQRDGILLLEL--DRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 253 i~~A~erg~--~~~~~v~d~~~L----pfpd~sFDlV~~s~~~l~~~~d~~~~L~ei--~RvLkPGG~Lvis~P~~ 320 (615)
. .+...++ ++.+..+|+... ++++++||+|++... ++ ..+....+..+ .++|+|||.+++..+..
T Consensus 85 ~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 85 E-NIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP-YA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp H-HHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC-GG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred H-HHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCC-CC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 2 2223343 478888886552 223688999998763 33 34456677777 89999999999988654
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.6e-10 Score=117.05 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=75.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccc-
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC- 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~- 288 (615)
+..+|||||||+|.++..+++. .|+++|+++ ++..+. +.+...+. ++.+..+|+..+++++++||+|++...
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 141 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAM-DIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 141 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHH-HHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence 3468999999999999988864 577887775 443333 33344443 688899999999998899999997652
Q ss_pred -ccccccchHHHHHHHHhccCCCeEEE
Q 007165 289 -RIDWLQRDGILLLELDRLLRPGGYFV 314 (615)
Q Consensus 289 -~l~~~~d~~~~L~ei~RvLkPGG~Lv 314 (615)
.+.+..+...++.++.|+|||||.++
T Consensus 142 ~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 142 YFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 24555667789999999999999998
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-09 Score=101.75 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=77.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCC-CCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPS-RSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd-~sFDlV~~s~~~ 289 (615)
+..+|||+|||+|.++..++.. .++++|+++..+..+. +.+...+. .+.+...|... ++++ ++||+|++.. .
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~-~ 109 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTE-MNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGG-S 109 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHH-HHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESC-C
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHH-HHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECC-c
Confidence 3468999999999999998865 4555555544433332 11222344 57778887654 2333 5899999876 3
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceE
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~ 344 (615)
++ +...++.++.++|+|||.+++..+.. .....+..++++.+|.
T Consensus 110 ~~---~~~~~l~~~~~~l~~gG~l~~~~~~~--------~~~~~~~~~l~~~g~~ 153 (192)
T 1l3i_A 110 GG---ELQEILRIIKDKLKPGGRIIVTAILL--------ETKFEAMECLRDLGFD 153 (192)
T ss_dssp TT---CHHHHHHHHHHTEEEEEEEEEEECBH--------HHHHHHHHHHHHTTCC
T ss_pred hH---HHHHHHHHHHHhcCCCcEEEEEecCc--------chHHHHHHHHHHCCCc
Confidence 44 45789999999999999999987642 1233445555555553
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-10 Score=106.94 Aligned_cols=123 Identities=19% Similarity=0.210 Sum_probs=80.1
Q ss_pred cCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEE
Q 007165 188 FHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTL 265 (615)
Q Consensus 188 F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~ 265 (615)
+........+.+.+.+... + .+..+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+.++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~---~---~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~ 92 (171)
T 1ws6_A 20 ARPSPVRLRKALFDYLRLR---Y---PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKE-NVRRTGLGARV 92 (171)
T ss_dssp CCCCCHHHHHHHHHHHHHH---C---TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHH-HHHHHTCCCEE
T ss_pred CCCCHHHHHHHHHHHHHhh---c---cCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHH-HHHHcCCceEE
Confidence 4445555666555555421 0 13468999999999999998865 35666665555444332 22223447888
Q ss_pred EEecCCCC-C-C--CCCCceEEEecccccccccchHHHHHHHH--hccCCCeEEEEEcCCC
Q 007165 266 GVLGTKRL-P-Y--PSRSFELAHCSRCRIDWLQRDGILLLELD--RLLRPGGYFVYSSPEA 320 (615)
Q Consensus 266 ~v~d~~~L-p-f--pd~sFDlV~~s~~~l~~~~d~~~~L~ei~--RvLkPGG~Lvis~P~~ 320 (615)
..+|.... + + ..++||+|++.. .++ .+...++..+. ++|+|||.++++.+..
T Consensus 93 ~~~d~~~~~~~~~~~~~~~D~i~~~~-~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 93 VALPVEVFLPEAKAQGERFTVAFMAP-PYA--MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp ECSCHHHHHHHHHHTTCCEEEEEECC-CTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred EeccHHHHHHhhhccCCceEEEEECC-CCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 88886552 2 1 134899999876 344 45556777777 9999999999988654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.7e-10 Score=122.84 Aligned_cols=123 Identities=13% Similarity=0.038 Sum_probs=87.2
Q ss_pred ccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhc---C-CCccccCChhchhHHHHH--H----H
Q 007165 187 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---H-DIIAMSLAPNDVHENQIQ--F----A 256 (615)
Q Consensus 187 ~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~---~-~V~gvdis~~Dls~a~i~--~----A 256 (615)
.|..........+.+.+.+. +..+|||||||+|.++..++. . .++|+|+++..+..+... . +
T Consensus 153 vYGEt~~~~i~~il~~l~l~--------~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~ 224 (438)
T 3uwp_A 153 VYGETSFDLVAQMIDEIKMT--------DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWM 224 (438)
T ss_dssp GGGGTHHHHHHHHHHHHCCC--------TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHhcCCC--------CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666532 347899999999999988763 2 377887776554433321 1 1
Q ss_pred HHcC---CCcEEEEecCCCCCCCC--CCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 257 LERG---IPSTLGVLGTKRLPYPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 257 ~erg---~~~~~~v~d~~~Lpfpd--~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+..| .++.+.++|+..+|+++ ..||+|+++. .+ |.++....|.++.|+|||||+|+++.+.
T Consensus 225 ~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn-~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f 290 (438)
T 3uwp_A 225 KWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNN-FA-FGPEVDHQLKERFANMKEGGRIVSSKPF 290 (438)
T ss_dssp HHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECC-TT-CCHHHHHHHHHHHTTSCTTCEEEESSCS
T ss_pred HHhCCCCCCeEEEECcccCCccccccCCccEEEEcc-cc-cCchHHHHHHHHHHcCCCCcEEEEeecc
Confidence 2224 36889999999988754 4799999866 34 4577888999999999999999987643
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=107.68 Aligned_cols=118 Identities=10% Similarity=0.093 Sum_probs=81.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcC-CCcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg-~~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||+|||+|.++..++.. +|+++|+++..+..+........+ .++.+...|....++++++||+|++.
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~-- 173 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD-- 173 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE--
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC--
Confidence 3468999999999999888753 466666555444333322222104 45788899988888888899999963
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
.+++..++.++.++|+|||++++..|.. .....+...++...|...
T Consensus 174 ----~~~~~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~l~~~gf~~~ 219 (258)
T 2pwy_A 174 ----LMEPWKVLEKAALALKPDRFLVAYLPNI--------TQVLELVRAAEAHPFRLE 219 (258)
T ss_dssp ----SSCGGGGHHHHHHHEEEEEEEEEEESCH--------HHHHHHHHHHTTTTEEEE
T ss_pred ----CcCHHHHHHHHHHhCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCceE
Confidence 3566679999999999999999988753 122334444555666544
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=112.32 Aligned_cols=123 Identities=11% Similarity=0.148 Sum_probs=81.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEE-EEecCCCCC---CCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTL-GVLGTKRLP---YPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~-~v~d~~~Lp---fpd~sFDlV~~s~ 287 (615)
...+|||||||||.++..|++. .|+++|+++.++..+ .+....+.. ...++..++ ++..+||+|+|..
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a-----~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~ 159 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWK-----LRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDV 159 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHH-----HHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECC
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHH-----HHhCcccceecccCceecchhhCCCCCCCEEEEEe
Confidence 3578999999999999988754 688888888777543 222223222 122333333 3445699999866
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcCCCCCC------------ChhH-HHHHHHHHHHHhhcceEEE
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH------------DPEN-RRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~------------~~e~-~~~w~~l~~La~~l~W~l~ 346 (615)
++++ ...+|.++.|+|||||.|++...+.+.. ++.. ...-..+..++...+|.+.
T Consensus 160 -sf~s---l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~ 227 (291)
T 3hp7_A 160 -SFIS---LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVK 227 (291)
T ss_dssp -SSSC---GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred -eHhh---HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 4553 4679999999999999999975443321 1221 2244567777778888755
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=110.01 Aligned_cols=121 Identities=10% Similarity=0.091 Sum_probs=80.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCC--CCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP--YPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lp--fpd~sFDlV~~s~ 287 (615)
+..+|||+|||+|.++..++.+ .|+++|+++..+..+.. .+...+. ++.+..+|+..++ +++++||+|+++-
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~-n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKR-SVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHH-HHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHH-HHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 3478999999999999999865 45566555544433332 2222344 3788889987765 5678999999853
Q ss_pred cccccc--------------------cchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 288 CRIDWL--------------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 288 ~~l~~~--------------------~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
. +... .+...++.++.++|||||+|++..+... ...+...+++..|...
T Consensus 128 P-y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------~~~~~~~l~~~~~~~~ 196 (259)
T 3lpm_A 128 P-YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER---------LLDIIDIMRKYRLEPK 196 (259)
T ss_dssp C-C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT---------HHHHHHHHHHTTEEEE
T ss_pred C-CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH---------HHHHHHHHHHCCCceE
Confidence 2 1111 2235699999999999999999765431 2334455555566543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-09 Score=115.15 Aligned_cols=98 Identities=10% Similarity=0.161 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCC--CCCCCCceE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRL--PYPSRSFEL 282 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~L--pfpd~sFDl 282 (615)
...+|||||||+|.++..++++ +++++| + +.+++.|+++ +. ++.+..+|.... |++ ++||+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D-----~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~ 251 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVD-----L-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDA 251 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEE-----C-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEe-----C-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCE
Confidence 3478999999999999999863 345554 4 4445555543 33 578899998765 566 78999
Q ss_pred EEecccccccccch--HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 283 AHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 283 V~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
|++.. ++|+.++. ..+|+++.++|||||+|++.++..
T Consensus 252 v~~~~-vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 290 (363)
T 3dp7_A 252 VWMSQ-FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLW 290 (363)
T ss_dssp EEEES-CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCT
T ss_pred EEEec-hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeecc
Confidence 99998 58776655 468999999999999999987543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.9e-10 Score=115.60 Aligned_cols=100 Identities=17% Similarity=0.108 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcC--CCcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
...+|||||||+|.++..+++. .++++|+ +..+..+. +.+.+.+ .++.+..+|.. .+++. +||+|++.+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~- 243 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAH-RRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSA- 243 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHH-HHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEES-
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHH-HhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEeh-
Confidence 4578999999999999998753 3455555 43333222 1222234 35889999876 45555 899999998
Q ss_pred ccccccch--HHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++|+.+++ ..+|+++.++|+|||+|++.++.
T Consensus 244 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 276 (332)
T 3i53_A 244 VLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV 276 (332)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred hhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 68888775 67999999999999999998754
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-10 Score=111.26 Aligned_cols=99 Identities=11% Similarity=0.226 Sum_probs=70.9
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
..+|||+|||+|.++..++.. .++++|+++.++.-+. +.+...|+...+...|.... .+.++||+|++.. ++|
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar-~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k-~LH 126 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLS-SIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLK-MLP 126 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHH-HHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEET-CHH
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHHhcCCCccEEEeccccc-CCCCCcChhhHhh-HHH
Confidence 578999999999999999643 4556655554443333 22333466655665665443 3568899999887 799
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEc
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++++.+..+.++.+.|+|||.||-..
T Consensus 127 lL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 127 VLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred hhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 99766777889999999999988543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.2e-10 Score=112.28 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=72.4
Q ss_pred CCCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCC---CCCCCCCCceEEEe
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---RLPYPSRSFELAHC 285 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~---~Lpfpd~sFDlV~~ 285 (615)
.++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.+.++ .++..+..|.. ..++..+++|+|++
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~-~~a~~~-~ni~~V~~d~~~p~~~~~~~~~vDvVf~ 153 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL-TVVRDR-RNIFPILGDARFPEKYRHLVEGVDGLYA 153 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHH-HHSTTC-TTEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-HhhHhh-cCeeEEEEeccCccccccccceEEEEEE
Confidence 35678999999999999999853 5778877766654332 223222 35666666643 34567789999986
Q ss_pred cccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
. +.+..+...++.++.++|||||+++++.
T Consensus 154 d---~~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 154 D---VAQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp C---CCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred e---ccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 4 4455677889999999999999999975
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=111.49 Aligned_cols=116 Identities=10% Similarity=0.127 Sum_probs=80.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHc-CC-CcEEEEecCCCCCCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-GI-PSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~er-g~-~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
+..+|||+|||+|.++..+++. .|+++|+++..+..+. +.+... +. ++.+..+|+.. ++++++||+|++
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~-- 185 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAM-DNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIA-- 185 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHH-HHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEE--
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHhcCCCCcEEEEECchhc-cCcCCCccEEEE--
Confidence 4578999999999999888753 4566655554443332 122222 43 57888888776 667789999996
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
+.+++..++.++.++|||||+++++++.. .....+...++..+|...
T Consensus 186 ----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--------~~~~~~~~~l~~~Gf~~~ 232 (275)
T 1yb2_A 186 ----DIPDPWNHVQKIASMMKPGSVATFYLPNF--------DQSEKTVLSLSASGMHHL 232 (275)
T ss_dssp ----CCSCGGGSHHHHHHTEEEEEEEEEEESSH--------HHHHHHHHHSGGGTEEEE
T ss_pred ----cCcCHHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCeEE
Confidence 24567789999999999999999998753 122344445555666544
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=8.7e-10 Score=108.80 Aligned_cols=126 Identities=14% Similarity=0.125 Sum_probs=82.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC---CCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---LPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~---Lpfpd~sFDlV~~s 286 (615)
+..+|||+|||+|.++..|++. .|+++|+++.++. .+++.|+.+ .++.+..+|+.. +++.+++||+|++.
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~-~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGR-DLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHH-HHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHH-HHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 3568999999999999988753 5778877765443 334556554 568888888776 45567899999975
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcCCC---CCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA---YAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~---~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
.. .......++.++.++|||||+++++.+.. .....+ ..+.....+++..+|....
T Consensus 155 ~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~--~~~~~~~~~l~~~Gf~~~~ 213 (233)
T 2ipx_A 155 VA---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAE--AVFASEVKKMQQENMKPQE 213 (233)
T ss_dssp CC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHH--HHHHHHHHTTGGGTEEEEE
T ss_pred CC---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHH--HHHHHHHHHHHHCCCceEE
Confidence 42 12222456889999999999999976431 111111 1122223555666776653
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=116.92 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=76.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||||||+|.++..++++ +|+++|++ .++..+. +.+...+.. +.+..+|+..++++ ++||+|++.. .
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~-~ 138 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHAR-ALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEW-M 138 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHH-HHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECC-C
T ss_pred CCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHH-HHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcC-h
Confidence 4578999999999999998865 67788887 5554443 444455554 78999999998887 8999999854 2
Q ss_pred cccc---cchHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWL---QRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~---~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.++. .....++.++.++|||||+|+++.
T Consensus 139 ~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 139 GYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp BTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3333 456779999999999999998754
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-09 Score=112.18 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=75.8
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||||||+|.++..+++.. .+..+.+.|++ .+++.|+++ ++ ++.+..+|....+++++ ||+|++.+
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~- 240 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPN- 240 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEES-
T ss_pred CCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcc-
Confidence 34789999999999999988641 12234444555 555555443 43 48889999887777654 99999988
Q ss_pred ccccccch--HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++|+.++. ..+++++.++|+|||++++.++..
T Consensus 241 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 241 FLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred hhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 58877544 689999999999999999987543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-10 Score=119.68 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=73.8
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
..+|||+|||+|.++..++.. +|+++|+++..+..+. +.+...++...+...|.... .+++||+|+++. .+|
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~-~~~~~~~~~~~~~~~d~~~~--~~~~fD~Iv~~~-~~~ 272 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASR-ATLAANGVEGEVFASNVFSE--VKGRFDMIISNP-PFH 272 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHH-HHHHHTTCCCEEEECSTTTT--CCSCEEEEEECC-CCC
T ss_pred CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhCCCCEEEEcccccc--ccCCeeEEEECC-Ccc
Confidence 357999999999999988753 5666666555444333 22233466677777776554 368999999987 466
Q ss_pred c-----ccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 292 W-----LQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 292 ~-----~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+ ..+...++.++.++|||||.+++..+..
T Consensus 273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 4 3345779999999999999999987653
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=107.48 Aligned_cols=94 Identities=13% Similarity=0.156 Sum_probs=70.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||||||+|.++..++.. .|+++ |+++.+++.|+++.. ++.+..+|......++++||+|++.. +
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~v-----D~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~-~ 143 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEIVDKVVSV-----EINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWA-T 143 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEE-----ESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESS-B
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcCEEEEE-----eCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECC-c
Confidence 3468999999999999998864 45555 555555566655421 67888888766333468899999888 5
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++++. .++.++|+|||+++++.++.
T Consensus 144 ~~~~~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 144 APTLL------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp BSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred HHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence 77765 37899999999999988653
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-09 Score=109.51 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=83.1
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
..+|||+|||+|.++..++.. +|+++|+++..+..+. +.+...+..+.+..+|.... +++++||+|+++. ..+
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~-~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~-~~~-- 195 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANL-YAE-- 195 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEEC-CHH--
T ss_pred CCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCcEEEEECChhhc-CcCCCCCEEEECC-cHH--
Confidence 468999999999999888754 5778887777665554 33334455577777775542 4567899999765 233
Q ss_pred cchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
....++.++.++|||||+++++..... ....+...+++.+|.+..
T Consensus 196 -~~~~~l~~~~~~LkpgG~lils~~~~~--------~~~~v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 196 -LHAALAPRYREALVPGGRALLTGILKD--------RAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp -HHHHHHHHHHHHEEEEEEEEEEEEEGG--------GHHHHHHHHHHTTCEEEE
T ss_pred -HHHHHHHHHHHHcCCCCEEEEEeeccC--------CHHHHHHHHHHCCCEEEE
Confidence 246789999999999999999864321 124455666666776654
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=106.06 Aligned_cols=132 Identities=11% Similarity=0.007 Sum_probs=82.9
Q ss_pred CeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHH
Q 007165 177 EKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQI 253 (615)
Q Consensus 177 ~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i 253 (615)
..+..+.+ ..+........+.+.+.+... .+..+|||+|||+|.++..++.+ .|+++|+++.++..+.
T Consensus 24 ~~l~~~~~-~~~rp~~~~~~~~l~~~l~~~-------~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~- 94 (202)
T 2fpo_A 24 RKLPVPDS-PGLRPTTDRVRETLFNWLAPV-------IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLI- 94 (202)
T ss_dssp CEEECCCC-------CHHHHHHHHHHHHHH-------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH-
T ss_pred cEecCCCC-CCCCCCHHHHHHHHHHHHHhh-------cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHH-
Confidence 34444432 233344455555555555321 02368999999999999986643 5677766665554444
Q ss_pred HHHHHcCC-CcEEEEecCCC-CCCCCCCceEEEecccccccccchHHHHHHHHh--ccCCCeEEEEEcCC
Q 007165 254 QFALERGI-PSTLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQRDGILLLELDR--LLRPGGYFVYSSPE 319 (615)
Q Consensus 254 ~~A~erg~-~~~~~v~d~~~-Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~R--vLkPGG~Lvis~P~ 319 (615)
+.+...+. ++.+.++|+.. ++..+++||+|++.. .++ ..+...++.++.+ +|+|||.++++...
T Consensus 95 ~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~-p~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 95 KNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDP-PFR-RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp HHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECC-SSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred HHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECC-CCC-CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 22333344 67888888765 566678999999875 344 3455678888865 69999999998754
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-09 Score=109.58 Aligned_cols=121 Identities=16% Similarity=0.065 Sum_probs=82.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCC---CCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP---SRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfp---d~sFDlV~~s 286 (615)
...+|||||||+|..+..|+.. +|+++|+++..+..+. +.+.+.++ ++.+..+|++.++.. +++||+|++.
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVE-RAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHH-HHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4578999999999988887642 5677766665554443 23333455 488899998877643 4799999975
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
. + .+...++.++.++|||||+|++...... .+ ....+...++.+.+....
T Consensus 159 a--~---~~~~~ll~~~~~~LkpgG~l~~~~g~~~---~~---e~~~~~~~l~~~G~~~~~ 208 (249)
T 3g89_A 159 A--V---APLCVLSELLLPFLEVGGAAVAMKGPRV---EE---ELAPLPPALERLGGRLGE 208 (249)
T ss_dssp S--S---CCHHHHHHHHGGGEEEEEEEEEEECSCC---HH---HHTTHHHHHHHHTEEEEE
T ss_pred C--c---CCHHHHHHHHHHHcCCCeEEEEEeCCCc---HH---HHHHHHHHHHHcCCeEEE
Confidence 4 2 3567899999999999999998654321 11 233444555666776553
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-09 Score=112.96 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=74.4
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccc--
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC-- 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~-- 288 (615)
..+|||||||+|.++..+++. +|+++|+++ ++..+. +.+.+.+. .+.+..+|+..+++++++||+|++...
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAK-ELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CCEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHHHH-HHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 468999999999999988864 577888773 443332 33444454 478899999999888889999998642
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEE
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvi 315 (615)
.+.+......++.++.++|||||.++.
T Consensus 117 ~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 234445667899999999999999984
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.1e-11 Score=118.55 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=74.8
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
..+|||+|||+|.++..++.. .|+++|+++..+..+. +.+...++ ++.+.++|+..++ ++++||+|++.. .++
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~-~~~ 155 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALAR-NNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSP-PWG 155 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECC-CCS
T ss_pred CCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECC-CcC
Confidence 468999999999999999865 4666666555544333 22333454 6889999987776 568999999887 588
Q ss_pred cccchHHHHHHHHhccCCCeEEEEE
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
+..+....+.++.++|+|||.+++.
T Consensus 156 ~~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 156 GPDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred CcchhhhHHHHHHhhcCCcceeHHH
Confidence 8877777888999999999997764
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-09 Score=117.29 Aligned_cols=128 Identities=12% Similarity=0.208 Sum_probs=82.5
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC----CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~----~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
.+|||+|||+|.++..++.. .|+++|+++..+..+.. .+...++ ++.+...|... ++++++||+|+|..
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~-n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~np- 300 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRL-NVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNP- 300 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECC-
T ss_pred CeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHH-HHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECC-
Confidence 78999999999999998754 46677666655544432 2223343 36778888766 56778999999876
Q ss_pred ccccc---cch--HHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEeeCceEEEe
Q 007165 289 RIDWL---QRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWA 356 (615)
Q Consensus 289 ~l~~~---~d~--~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~~~~aiwq 356 (615)
.+|+. .+. ..++.++.++|||||.++++.+..... ...++.+.. ..+...+.....|++
T Consensus 301 pfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~-------~~~l~~~fg--~~~~~a~~~~F~V~~ 364 (375)
T 4dcm_A 301 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDY-------FHKLKKIFG--NCTTIATNNKFVVLK 364 (375)
T ss_dssp CC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCH-------HHHHHHHHS--CCEEEEECSSEEEEE
T ss_pred CcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCH-------HHHHHHhcC--CEEEEeeCCCEEEEE
Confidence 46642 222 368999999999999999987543211 122333333 244555555555554
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-09 Score=108.04 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=67.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCC----CCCCCCCceEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKR----LPYPSRSFELA 283 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~----Lpfpd~sFDlV 283 (615)
+..+|||+|||+|.++..|++. .|+++|+++ .+++.|+++ ..++.+..+|+.. ++++ ++||+|
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v 147 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAP-----RIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVI 147 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCH-----HHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEE
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCH-----HHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEE
Confidence 4578999999999999988754 455665554 444444332 2467888889887 7776 789999
Q ss_pred Eecccccccccch---HHHHHHHHhccCCCeEEEEE
Q 007165 284 HCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 284 ~~s~~~l~~~~d~---~~~L~ei~RvLkPGG~Lvis 316 (615)
++ +++++ ..++.++.++|||||+++++
T Consensus 148 ~~------~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 148 YE------DVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EE------CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EE------ecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 82 23444 66899999999999999996
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5e-10 Score=111.19 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=65.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCC-hhchhHHH--HHHHHHcCC-CcEEEEecCCCCCCC-CCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLA-PNDVHENQ--IQFALERGI-PSTLGVLGTKRLPYP-SRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis-~~Dls~a~--i~~A~erg~-~~~~~v~d~~~Lpfp-d~sFDlV~~ 285 (615)
+..+|||||||+|.++..|+.. .|+|+|++ +.++..+. .+.+.+.+. ++.+.++|+..+|.. ...+|.|++
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 3468999999999999999843 46777776 33322210 011223344 588899999888632 145555554
Q ss_pred cccccc-----cccchHHHHHHHHhccCCCeEEEEEc
Q 007165 286 SRCRID-----WLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 286 s~~~l~-----~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
... .. ...+...+|.++.|+|||||+|++..
T Consensus 104 ~~~-~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 104 LFP-WGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp ESC-CHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred eCC-CcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 331 11 11234568999999999999999943
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.92 E-value=6.4e-10 Score=104.53 Aligned_cols=103 Identities=16% Similarity=0.082 Sum_probs=69.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCC-CCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~-Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||+|||+|.++..++.. .|+++|+++..+..+. +.+...++ ++.+..+|+.. ++..+++||+|++..
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~- 108 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQ-DNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP- 108 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHH-HHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC-
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC-
Confidence 3468999999999999988864 4566655554443332 22222343 37788888655 344446799999865
Q ss_pred ccccccchHHHHHHHH--hccCCCeEEEEEcCCC
Q 007165 289 RIDWLQRDGILLLELD--RLLRPGGYFVYSSPEA 320 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~--RvLkPGG~Lvis~P~~ 320 (615)
.++ .......+..+. ++|+|||.+++..+..
T Consensus 109 ~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 109 PYA-KETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCC-cchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 332 234456777776 9999999999988654
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.7e-09 Score=112.40 Aligned_cols=99 Identities=20% Similarity=0.314 Sum_probs=76.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||||||+|.++..++++ +++++|+ +..+..+.. .+.+.+. .+.+..+|....++++. |+|++..
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~- 264 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNE-NAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCR- 264 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHH-HHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEES-
T ss_pred CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHH-HHHhcCCCCCEEEEeCccccCCCCCC--CEEEEec-
Confidence 3578999999999999998754 5677777 655554442 2233343 38899999888777654 9999988
Q ss_pred ccccccc--hHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQR--DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d--~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
++|+.++ ...+|+++.++|||||++++.++
T Consensus 265 vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 265 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp CGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred hhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 5887776 57799999999999999988773
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-09 Score=106.67 Aligned_cols=98 Identities=13% Similarity=0.195 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
++.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+.+ +.+...|+... +++++||+|++.
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~~- 169 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWE-NIKWAGFDDRVTIKLKDIYEG-IEEENVDHVILD- 169 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH-HHHHHTCTTTEEEECSCGGGC-CCCCSEEEEEEC-
T ss_pred CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHH-HHHHcCCCCceEEEECchhhc-cCCCCcCEEEEC-
Confidence 4578999999999999888754 45666665544433332 22223543 78888887654 677899999963
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.+++..++.++.++|+|||++++..|..
T Consensus 170 -----~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 197 (255)
T 3mb5_A 170 -----LPQPERVVEHAAKALKPGGFFVAYTPCS 197 (255)
T ss_dssp -----SSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred -----CCCHHHHHHHHHHHcCCCCEEEEEECCH
Confidence 3466779999999999999999988653
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-09 Score=103.41 Aligned_cols=97 Identities=14% Similarity=0.043 Sum_probs=70.6
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
..+|||+|||+|.++..++.. .++++|+++..+..+. +.+...+. ++.+..+|...++ ++++||+|++.. +
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~--~ 141 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLR-QVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA--F 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC--S
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec--c
Confidence 468999999999999888743 5666666555443333 22223354 3788888887776 557899999653 2
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+...++.++.++|+|||++++....
T Consensus 142 ---~~~~~~l~~~~~~L~~gG~l~~~~~~ 167 (207)
T 1jsx_A 142 ---ASLNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred ---CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 45678999999999999999997643
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-09 Score=113.85 Aligned_cols=95 Identities=22% Similarity=0.236 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHH----cCC--CcEEEEecCCCCCCCCCCceEEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGI--PSTLGVLGTKRLPYPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~e----rg~--~~~~~v~d~~~Lpfpd~sFDlV~ 284 (615)
+..+|||||||+|.++..+++. .++++|+ +.+++.|++ .++ ++.+..+|... +++. .||+|+
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~ 253 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL------AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVL 253 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC------HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC------HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEE
Confidence 4578999999999999998854 3445544 444444443 343 58888888754 4443 499999
Q ss_pred ecccccccccchH--HHHHHHHhccCCCeEEEEEcC
Q 007165 285 CSRCRIDWLQRDG--ILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 285 ~s~~~l~~~~d~~--~~L~ei~RvLkPGG~Lvis~P 318 (615)
+.+ ++|+.++.. .+++++.++|||||++++.++
T Consensus 254 ~~~-vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 254 LSF-VLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EES-CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred Eec-cccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 998 588777764 799999999999999999876
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.9e-09 Score=111.23 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcC--CCcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
...+|||||||+|.++..++++ .++++|+ +..+..+. +.+.+.+ .++.+..+|.. .+++. .||+|++.+
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~- 276 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEAR-ELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKH- 276 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHH-HHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEES-
T ss_pred cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHH-HhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhh-
Confidence 4578999999999999998864 3455555 43333322 1222223 35888999876 56665 899999998
Q ss_pred ccccccchH--HHHHHHHhccCCCeEEEEEcCC
Q 007165 289 RIDWLQRDG--ILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~~~~d~~--~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++|+.++.. .+|+++.++|+|||+|++.++.
T Consensus 277 vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 309 (369)
T 3gwz_A 277 VLHDWDDDDVVRILRRIATAMKPDSRLLVIDNL 309 (369)
T ss_dssp CGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred hhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 588887775 6999999999999999997743
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-09 Score=102.12 Aligned_cols=91 Identities=12% Similarity=0.155 Sum_probs=68.4
Q ss_pred CCeEEEECCCCchHHHHHhcC------CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC---------------
Q 007165 216 IRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------------- 274 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~------~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--------------- 274 (615)
..+|||+|||+|.++..+++. .|+++|+++.. ...++.+.++|....+
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~ 91 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNN 91 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC-----------
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccccc
Confidence 468999999999999988743 57788777631 1234778888887776
Q ss_pred ----------CCCCCceEEEecccccccc----cch-------HHHHHHHHhccCCCeEEEEEcC
Q 007165 275 ----------YPSRSFELAHCSRCRIDWL----QRD-------GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 275 ----------fpd~sFDlV~~s~~~l~~~----~d~-------~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+++++||+|++.. .+++. .+. ..++.++.++|||||.|++...
T Consensus 92 ~~~~~~~~~~~~~~~fD~v~~~~-~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 92 NSVDYKLKEILQDKKIDIILSDA-AVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECC-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhHHHHHhhcCCCcccEEEeCC-CcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 5678999999876 46653 222 2378999999999999999764
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-09 Score=109.61 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=74.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcC---CCcEEEEecCCCCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
+..+|||+|||+|.++..++.. .++++|+++..+..+........+ .++.+..+|+...++++++||+|++.
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~ 178 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLD 178 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEE
T ss_pred CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEEC
Confidence 3468999999999999888753 566676665554444322222203 46788889988888888899999963
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.+++..++.++.++|+|||++++..|..
T Consensus 179 ------~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 179 ------MLAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp ------SSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ------CcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 2456679999999999999999998753
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.91 E-value=4e-09 Score=102.21 Aligned_cols=98 Identities=14% Similarity=0.097 Sum_probs=67.8
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||||||+|.++..++. ..|+++|+++..+..+.... ...+. ++.+...|.......+++||+|++..
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~- 154 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTL-RKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTA- 154 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH-HHHTCTTEEEEESCGGGCCGGGCCEEEEEESS-
T ss_pred CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCeEEEECCcccCCCCCCCeeEEEECC-
Confidence 346899999999999988874 34666655554443333222 22233 47788888643222367899999888
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++++++ .++.++|||||++++..+..
T Consensus 155 ~~~~~~------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 155 AGPKIP------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp BBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred chHHHH------HHHHHHcCCCcEEEEEECCC
Confidence 577765 48899999999999988653
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-09 Score=110.85 Aligned_cols=97 Identities=11% Similarity=0.068 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC--C---CccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--D---IIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~---V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
++.+|||||||+|.++..+++. . |+++|+++..+..+. +.+.+.+. ++.+..+|....+.++++||+|++..
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~-~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~- 152 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTV- 152 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS-
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCeEEEECChhhccccCCCeEEEEEcC-
Confidence 3478999999999999988753 3 677766655544333 22223344 47888889877655668999999888
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.++++. .++.++|||||+++++..+
T Consensus 153 ~~~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 153 GVDEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp BBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred CHHHHH------HHHHHhcCCCcEEEEEECC
Confidence 577765 5788999999999998743
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.4e-10 Score=108.56 Aligned_cols=101 Identities=12% Similarity=0.001 Sum_probs=58.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCC-----CCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS-----RSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd-----~sFDlV~~ 285 (615)
+..+|||+|||+|.++..++.. +++++|+++..+..+.. .+...+.++.+.++|+.. ++++ ++||+|++
T Consensus 30 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 30 SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARR-NAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVS 107 (215)
T ss_dssp TTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHH-HHHHHHHTTCCBSEEEE
T ss_pred CCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH-HHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEE
Confidence 4578999999999999988864 45666655554433331 112223356677777655 5555 89999998
Q ss_pred cccccccccc--------------------------hHHHHHHHHhccCCCeE-EEEEcC
Q 007165 286 SRCRIDWLQR--------------------------DGILLLELDRLLRPGGY-FVYSSP 318 (615)
Q Consensus 286 s~~~l~~~~d--------------------------~~~~L~ei~RvLkPGG~-Lvis~P 318 (615)
... ++...+ ...++.++.++|||||+ +++..+
T Consensus 108 npp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 108 NPP-YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp CCC-CCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred CCC-CCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 532 221111 15688999999999999 666554
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.2e-09 Score=115.57 Aligned_cols=102 Identities=7% Similarity=-0.020 Sum_probs=73.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHH--HHHHHHH----cC---CCcEEEEecCCCC--CC--CC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHEN--QIQFALE----RG---IPSTLGVLGTKRL--PY--PS 277 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a--~i~~A~e----rg---~~~~~~v~d~~~L--pf--pd 277 (615)
+..+|||||||+|.++..++.. .|+|+|+++..+..+ |++.+++ .| .++.+..+|.... ++ ..
T Consensus 242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~ 321 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELI 321 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHG
T ss_pred CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccccc
Confidence 4578999999999999988752 478888877665544 3333333 35 3577777654322 22 24
Q ss_pred CCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
++||+|+++.. + +.++...+|.++.++|||||.+++..+
T Consensus 322 ~~FDvIvvn~~-l-~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 322 PQCDVILVNNF-L-FDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp GGCSEEEECCT-T-CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred CCCCEEEEeCc-c-ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 78999998763 4 457777889999999999999999754
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=8.3e-10 Score=118.70 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=73.5
Q ss_pred CCeEEEECCC------CchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCC------CC
Q 007165 216 IRNVLDVGCG------VASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP------SR 278 (615)
Q Consensus 216 ~~~VLDIGCG------tG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfp------d~ 278 (615)
..+||||||| +|..+..++. ..|+++|+++.+. ....++.+.++|+.++|+. ++
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d~ 287 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRYG 287 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhcccC
Confidence 4789999999 6665555543 3678888877642 2345789999999998887 78
Q ss_pred CceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 279 sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+||+|+|.. .|+..+...+|.++.|+|||||+|++.+.
T Consensus 288 sFDlVisdg--sH~~~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 288 PFDIVIDDG--SHINAHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp CEEEEEECS--CCCHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred CccEEEECC--cccchhHHHHHHHHHHhcCCCeEEEEEec
Confidence 999999764 56777888999999999999999999863
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.1e-09 Score=110.51 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=75.3
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc-CCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er-g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
.+|||||||+|.++..++++ +++++|+ +..+..+........ ..++.+..+|... +++ ++||+|++.+ ++|
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~-vl~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSR-IIG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEES-CGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEch-hcc
Confidence 78999999999999998754 4677777 666655443222211 2358888888766 565 6899999998 577
Q ss_pred cccchH--HHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WLQRDG--ILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~~d~~--~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+.++.. .+++++.++|+|||++++.++.
T Consensus 245 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 245 DLDEAASLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp GCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 666665 8999999999999999998754
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-08 Score=102.55 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=70.7
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccc--
Q 007165 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC-- 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~-- 288 (615)
..+|||+|||+|.++..++. ..|+++|+++..+..+.. .+...++ ++.+..+|.... +++++||+|+++..
T Consensus 110 ~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQR-NAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPYI 187 (276)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-HHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCCB
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEcchhhh-cccCCccEEEECCCCC
Confidence 46899999999999998874 256677666555544432 2223354 478888887653 44678999998631
Q ss_pred ----------ccccc------------cchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 ----------RIDWL------------QRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ----------~l~~~------------~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+++|. .....++.++.++|+|||++++..+.
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~ 240 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW 240 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 12222 23467899999999999999998653
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-09 Score=112.05 Aligned_cols=100 Identities=12% Similarity=0.179 Sum_probs=75.1
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCC-CCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP-YPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lp-fpd~sFDlV~~s~~ 288 (615)
..+|||||||+|.++..+++. .++++|+ +..+..+. +.+.+.+. .+.+..+|....+ +..+.||+|++.+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~- 256 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAAR-KTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLND- 256 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHH-HHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEES-
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHH-HHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEec-
Confidence 578999999999999998754 4566776 44443333 23333343 4788889987765 2346799999998
Q ss_pred ccccccch--HHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P 318 (615)
++|+.++. ..+|+++.++|+|||+|++.++
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 257 CLHYFDAREAREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 58887765 6799999999999999999764
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.88 E-value=8e-10 Score=110.51 Aligned_cols=119 Identities=13% Similarity=0.209 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEE-ecC-----CCCC---CCCCCceE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGV-LGT-----KRLP---YPSRSFEL 282 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v-~d~-----~~Lp---fpd~sFDl 282 (615)
...+|||||||+|.++..|++. .|+++|+++.++.. |+++...+.... .+. ..++ ++..+||+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~-----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~ 111 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAW-----KIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDV 111 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCH-----HHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECC
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHH-----HHHhCccccccccceEEEeCHhHcCcCCCCEEEEEE
Confidence 3468999999999999998864 57788877777654 333332221110 011 1121 22234444
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCC------------Chh-HHHHHHHHHHHHhhcceEEEE
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH------------DPE-NRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~------------~~e-~~~~w~~l~~La~~l~W~l~~ 347 (615)
++++ ...++.++.|+|||||+|++...+.+.. +.. .....+.+..+++..+|.+..
T Consensus 112 v~~~---------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~ 180 (232)
T 3opn_A 112 SFIS---------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKG 180 (232)
T ss_dssp SSSC---------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred Ehhh---------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEE
Confidence 4322 1569999999999999999874222111 111 112345677778888887653
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.4e-09 Score=111.11 Aligned_cols=105 Identities=13% Similarity=0.131 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC---------CCcEEEEecCCCCCC--CCCCceEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---------IPSTLGVLGTKRLPY--PSRSFELA 283 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg---------~~~~~~v~d~~~Lpf--pd~sFDlV 283 (615)
.+.+|||||||+|.++..+++.. ....+...|+++.+++.|+++. .++.+..+|...++. ++++||+|
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 34789999999999999998641 1123334455555555555432 457888888766543 46899999
Q ss_pred Eecccccccccch----HHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 284 HCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 284 ~~s~~~l~~~~d~----~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
++.. ..++.+.. ..+++++.++|||||.|++.....+
T Consensus 174 i~d~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 214 (304)
T 3bwc_A 174 IIDT-TDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW 214 (304)
T ss_dssp EEEC-C---------CCHHHHHHHHHHEEEEEEEEEEECCTT
T ss_pred EECC-CCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc
Confidence 9865 34443322 5789999999999999999876654
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-09 Score=110.98 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=72.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||||||+|.++..+++. .++++|+ +..+..+. +.+...++ ++.+..+|... +++. .||+|++..
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~- 257 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTAR-SYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSF- 257 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHH-HHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEES-
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHH-HHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEcc-
Confidence 3478999999999999988754 3445555 44443333 22223344 58888888754 4443 499999988
Q ss_pred ccccccch--HHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++|+.++. ..+++++.++|+|||++++.++.
T Consensus 258 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 258 VLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 58777766 47999999999999999998765
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=5.7e-09 Score=103.17 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=67.9
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCC-CceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSR-SFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~---~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~-sFDlV~~s~~~l 290 (615)
..+|||||||+|.++..+++ ..|+++|+++..+..+.. .....+. ++.+..+|. ..++++. .||+|++.. .+
T Consensus 92 ~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~-~~ 168 (235)
T 1jg1_A 92 GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKR-NLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTA-GA 168 (235)
T ss_dssp TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHH-HHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECS-BB
T ss_pred CCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECC-cH
Confidence 46799999999999998875 356777666554443332 2222343 477788886 4455544 499999887 56
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+++. .++.++|+|||.++++.++.
T Consensus 169 ~~~~------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 169 PKIP------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp SSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred HHHH------HHHHHhcCCCcEEEEEEecC
Confidence 6654 37899999999999998764
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.1e-09 Score=110.47 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=74.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||||||+|.++..++++ +|+++|+++ +...+ .+.++..+. ++.+..+|...++++ ++||+|++....
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a-~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~ 126 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHA-EVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG 126 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHH-HHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCB
T ss_pred CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHH-HHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCch
Confidence 3468999999999999988754 577888774 44322 233444454 588899999888776 689999987643
Q ss_pred cccc-cchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 290 IDWL-QRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 290 l~~~-~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.++. ++....+.++.++|||||.++++...
T Consensus 127 ~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (348)
T 2y1w_A 127 YMLFNERMLESYLHAKKYLKPSGNMFPTIGD 157 (348)
T ss_dssp TTBTTTSHHHHHHHGGGGEEEEEEEESCEEE
T ss_pred hcCChHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence 3333 23456888999999999999975433
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-09 Score=114.79 Aligned_cols=96 Identities=15% Similarity=0.040 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+..+|||||||+|.++..++++. ..+.+...|+ +.+++.|++. ..+.+..+|... ++++ ||+|++.. ++|+.+
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~-~lh~~~ 281 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKA-VCHNWS 281 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCC--EEEEEEES-SGGGSC
T ss_pred CCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhhc-CCCEEEeCCccc-CCCC--CCEEEEec-ccccCC
Confidence 34789999999999999998652 1223334455 5555555543 358888999876 6664 99999988 688888
Q ss_pred chH--HHHHHHHhccCCCeEEEEEc
Q 007165 295 RDG--ILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 295 d~~--~~L~ei~RvLkPGG~Lvis~ 317 (615)
++. .+|+++.++|||||+|++.+
T Consensus 282 d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 282 DEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 887 89999999999999999985
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-09 Score=105.27 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=70.1
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc-------CC-CcEEEEecCCC-CC--CCCCCc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-------GI-PSTLGVLGTKR-LP--YPSRSF 280 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er-------g~-~~~~~v~d~~~-Lp--fpd~sF 280 (615)
..+|||||||+|.++..++.. .|+|+|+++..+..+.......+ ++ ++.+..+|+.. ++ +++++|
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~ 129 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL 129 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence 467999999999999998753 46777766655544432222210 43 67888999776 66 778999
Q ss_pred eEEEecccccccccc--------hHHHHHHHHhccCCCeEEEEEc
Q 007165 281 ELAHCSRCRIDWLQR--------DGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 281 DlV~~s~~~l~~~~d--------~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
|.|+.... -.|... ...++.++.++|+|||.|++.+
T Consensus 130 d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 130 SKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp EEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 99985431 122110 0479999999999999999965
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-09 Score=104.23 Aligned_cols=101 Identities=18% Similarity=0.203 Sum_probs=69.6
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCC-CCC-C----CCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPY-P----SRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~-Lpf-p----d~sFDl 282 (615)
..+|||||||+|.++..++.. +|+++|+++..+..+. +.+...+. .+.+..+|+.. ++. + .++||+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQ-QMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHH-HHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHH-HHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 468999999999999999863 4566666555444333 22222354 37888888633 332 2 278999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|++.. ..++..+...++..+ ++|||||+|++....
T Consensus 138 V~~d~-~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 138 VFLDH-WKDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEECS-CGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEcC-CcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 99876 455555555677777 999999999986643
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.3e-09 Score=105.47 Aligned_cols=99 Identities=13% Similarity=0.120 Sum_probs=69.2
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCC-CCCC--CCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPYP--SRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~-Lpfp--d~sFDlV~~ 285 (615)
..+|||||||+|..+..++.. .|+++|+++..+..+. +.+.+.+. ++.+.++|+.. ++.. .++||+|++
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVAR-ENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHH-HHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 478999999999999999864 4556655554443333 22222354 47888888654 3332 358999997
Q ss_pred cccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.. ...+...++.++.++|||||+|++....
T Consensus 143 d~----~~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 143 DA----DKPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp CS----CGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred CC----chHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 54 2445567999999999999999987643
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.84 E-value=7.1e-09 Score=103.93 Aligned_cols=98 Identities=10% Similarity=0.028 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC---CCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp---fpd~sFDlV~~s 286 (615)
++.+|||+|||+|.++..+++. .|+++|+++.++.. +++.|+++ .++.+.++|+.... ...++||+|++.
T Consensus 76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~-l~~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRE-LLLVAQRR-PNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHH-HHHHHHHC-TTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHH-HHHHhhhc-CCeEEEEcccccchhhhccccceEEEEec
Confidence 4578999999999999888753 68888887766533 34556555 46888888876532 124689999976
Q ss_pred ccccccccchHH-HHHHHHhccCCCeEEEEEcC
Q 007165 287 RCRIDWLQRDGI-LLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 287 ~~~l~~~~d~~~-~L~ei~RvLkPGG~Lvis~P 318 (615)
. +. ++... ++..+.++|||||+|+++..
T Consensus 154 ~-a~---~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 154 I-AQ---PDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp C-CC---TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred C-CC---hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 4 23 44444 44566679999999999853
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-09 Score=112.93 Aligned_cols=99 Identities=14% Similarity=0.015 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHH--Hc--CCCcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL--ER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~--er--g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
...+|||||||+|.++..++++. ..+.+...|++... ..++ +. ..++.+..+|.. .++| +||+|++.. ++
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~-~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~-vl 257 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDRAEVV-ARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKR-IL 257 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEECHHHH-TTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEES-CG
T ss_pred CCceEEEECCccCHHHHHHHHHC-CCCEEEEecCHHHh-hcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEeh-hc
Confidence 45789999999999999998641 11222333443222 2111 11 234788888875 4455 899999998 68
Q ss_pred ccccch--HHHHHHHHhccCCCeEEEEEcCC
Q 007165 291 DWLQRD--GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 291 ~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|+.++. ..+|+++.++|||||+|++.++.
T Consensus 258 h~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 258 HNWGDEDSVRILTNCRRVMPAHGRVLVIDAV 288 (348)
T ss_dssp GGSCHHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 888877 58999999999999999998753
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.84 E-value=8e-09 Score=101.97 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=70.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
+..+|||+|||+|.++..++.. .++++|+++..+..+.. .....++ ++.+...|.....+++++||+|++.
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~---- 165 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQK-NLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD---- 165 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHH-HHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC----
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHH-HHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC----
Confidence 3468999999999999988864 55566555444433321 1222243 5778888877654366789999963
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.+++..++.++.++|+|||.+++..+..
T Consensus 166 --~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 166 --VREPWHYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp --SSCGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred --CcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 2466679999999999999999988753
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3e-09 Score=111.88 Aligned_cols=98 Identities=9% Similarity=-0.009 Sum_probs=74.4
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
...+|||||||+|.++..++++. ....+.+.|+ +.+++.|++. ..+.+..+|... ++++ ||+|++.+ ++|+.+
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~-~lh~~~ 260 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKY-ILHNWT 260 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEES-CGGGSC
T ss_pred cCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhcccC-CCcEEEeccccC-CCCC--ccEEEeeh-hhccCC
Confidence 34789999999999999998541 1223444455 5566665543 348888888765 5653 99999988 588888
Q ss_pred chH--HHHHHHHhccCC---CeEEEEEcCC
Q 007165 295 RDG--ILLLELDRLLRP---GGYFVYSSPE 319 (615)
Q Consensus 295 d~~--~~L~ei~RvLkP---GG~Lvis~P~ 319 (615)
+.. .+|+++.++||| ||++++.++.
T Consensus 261 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 290 (352)
T 1fp2_A 261 DKDCLRILKKCKEAVTNDGKRGKVTIIDMV 290 (352)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence 877 899999999999 9999998753
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.83 E-value=6.2e-09 Score=101.96 Aligned_cols=97 Identities=14% Similarity=0.135 Sum_probs=67.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC---CCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp---fpd~sFDlV~~s 286 (615)
+..+|||+|||+|.++..+++. .|+++|+++..+..+. +.+++. .++.+..+|+.... ...++||+|++.
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~-~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEER-RNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHH-HHHhcc-CCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 3468999999999999988743 5667766655443322 233222 46788888876631 123689999965
Q ss_pred ccccccccch-HHHHHHHHhccCCCeEEEEEc
Q 007165 287 RCRIDWLQRD-GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~-~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.. .++. ..++.++.++|||||+++++.
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 42 2333 345999999999999999974
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.5e-09 Score=102.73 Aligned_cols=98 Identities=17% Similarity=0.158 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcC------CCcEEEEecCCCCCCCCCCceEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG------IPSTLGVLGTKRLPYPSRSFELA 283 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg------~~~~~~v~d~~~Lpfpd~sFDlV 283 (615)
+..+|||||||+|.++..++.. .|+++|+++..+..+.... ...+ .++.+..+|....+.++++||+|
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 155 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV-RKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI 155 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH-HhhcccccCCCcEEEEECCcccCcccCCCcCEE
Confidence 3468999999999999888742 5667766665554443222 2222 25788888877666566889999
Q ss_pred EecccccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 284 ~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++.. .+++ ++.++.++|||||+++++.+..
T Consensus 156 ~~~~-~~~~------~~~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 156 HVGA-AAPV------VPQALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp EECS-BBSS------CCHHHHHTEEEEEEEEEEESCT
T ss_pred EECC-chHH------HHHHHHHhcCCCcEEEEEEecC
Confidence 9877 3543 3468899999999999987653
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-08 Score=106.45 Aligned_cols=102 Identities=18% Similarity=0.067 Sum_probs=75.9
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
..+|||+|||+|.++..++. ..++|+|+++..+..+. +.+...|+ .+.+.++|+..++.+.+.||+|++...
T Consensus 204 ~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~-~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npP- 281 (354)
T 3tma_A 204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAR-EAALASGLSWIRFLRADARHLPRFFPEVDRILANPP- 281 (354)
T ss_dssp TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHH-HHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCC-
T ss_pred CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHH-HHHHHcCCCceEEEeCChhhCccccCCCCEEEECCC-
Confidence 46799999999999888764 46777777766665444 33334455 589999999998887788999998531
Q ss_pred ccc--------ccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 290 IDW--------LQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 290 l~~--------~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+.. ......++.++.++|||||.+++.+++
T Consensus 282 yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 282 HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 211 111256899999999999999998865
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.8e-09 Score=104.59 Aligned_cols=98 Identities=8% Similarity=0.098 Sum_probs=70.2
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCC-C-CCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-YPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~L-p-fpd~sFDlV~~s~ 287 (615)
..+|||||||+|.++..|+.. .|+++|+++..+..+. +.+.+.++ ++.+..+|+... + ..+++||+|++..
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAK-QNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHH-HHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 468999999999999999873 4556655554443333 22233354 588999987553 3 3368999999654
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
...+...++.++.++|||||+|++...
T Consensus 151 ----~~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 151 ----AKAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp ----TSSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred ----cHHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 244567799999999999999998653
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.81 E-value=5e-09 Score=103.69 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=68.9
Q ss_pred CeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCC---cEEEEecCCCC-C-CCCCCceEEEec
Q 007165 217 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRL-P-YPSRSFELAHCS 286 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~---~~~~v~d~~~L-p-fpd~sFDlV~~s 286 (615)
.+|||||||+|..+..|+.+ .|+++|+++..+..+. +...+.+.. +.+..+|+... + +++++||+|++.
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAK-ALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHH-HHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 48999999999999988753 5667766665554443 222333543 78888876443 2 346899999975
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
. ...+...++.++.++|||||++++...
T Consensus 137 ~----~~~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 137 V----SPMDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp C----CTTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred C----cHHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 4 234456799999999999999998553
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.81 E-value=8.7e-09 Score=108.56 Aligned_cols=107 Identities=14% Similarity=0.167 Sum_probs=72.1
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCCC--CCCCCCceEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL--PYPSRSFELA 283 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~L--pfpd~sFDlV 283 (615)
.+++|||||||+|.++..++... ....+...|+++.+++.|+++ ..++.+.++|+... .+++++||+|
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 34789999999999999998641 112333334455555555443 23678888886543 2346789999
Q ss_pred Eeccccccc--ccc--hHHHHHHHHhccCCCeEEEEEcCCCCCC
Q 007165 284 HCSRCRIDW--LQR--DGILLLELDRLLRPGGYFVYSSPEAYAH 323 (615)
Q Consensus 284 ~~s~~~l~~--~~d--~~~~L~ei~RvLkPGG~Lvis~P~~~~~ 323 (615)
++.. ..++ ..+ ...++.++.++|+|||.|++.....|..
T Consensus 199 i~d~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 241 (334)
T 1xj5_A 199 IVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLH 241 (334)
T ss_dssp EECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTC
T ss_pred EECC-CCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 9754 2222 111 3679999999999999999986555543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.1e-09 Score=111.20 Aligned_cols=98 Identities=13% Similarity=0.021 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
...+|||||||+|.++..++++. ..+.+...|+ +.+++.|++. .++.+..+|... |++++ |+|++.. ++|+.+
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~-vlh~~~ 275 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKW-ICHDWS 275 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEES-CGGGBC
T ss_pred CCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEec-hhhcCC
Confidence 45789999999999999998641 1222333455 4455555443 468899999776 77754 9999988 587766
Q ss_pred ch--HHHHHHHHhccCCCeEEEEEcCC
Q 007165 295 RD--GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 295 d~--~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+. ..+|++++++|||||+|++.+..
T Consensus 276 ~~~~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 276 DEHCLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 65 46899999999999999998743
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.80 E-value=6.8e-09 Score=101.98 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=69.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC----------CCccccCChhchhHHHHHHHHHc-----CCCcEEEEecCCCCCCCC-C
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----------DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPS-R 278 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----------~V~gvdis~~Dls~a~i~~A~er-----g~~~~~~v~d~~~Lpfpd-~ 278 (615)
+..+|||||||+|.++..++.. .|+++|+++..+..+........ ..++.+..+|... ++++ +
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 162 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNA 162 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGC
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCC
Confidence 3468999999999999888652 56777666655544432222211 2357888888765 4554 7
Q ss_pred CceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 279 sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+||+|++.. .++++. .++.++|||||++++....
T Consensus 163 ~fD~I~~~~-~~~~~~------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 163 PYNAIHVGA-AAPDTP------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp SEEEEEECS-CBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred CccEEEECC-chHHHH------HHHHHHhcCCCEEEEEEec
Confidence 899999887 466543 7889999999999998754
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=9.7e-10 Score=123.54 Aligned_cols=101 Identities=19% Similarity=0.175 Sum_probs=75.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcC-CCcEEEEecCCCC--CCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRL--PYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg-~~~~~~v~d~~~L--pfpd~sFDlV~~s~~~ 289 (615)
++.+|||||||.|.++..|+.. .|+|+|+++..+..+. ..|.+.| .++.+.+++++++ ++++++||+|+|+. +
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e-~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCR-ALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS-V 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES-C
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHH-HHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc-c
Confidence 4468999999999999999865 5666666655554444 2333444 6789999998887 56778999999999 6
Q ss_pred cccccchHH--HHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRDGI--LLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~~~--~L~ei~RvLkPGG~Lvis~ 317 (615)
++|++++.. .+..+.+.|+++|..++..
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence 999988853 3556777788887666544
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-08 Score=103.60 Aligned_cols=116 Identities=13% Similarity=0.145 Sum_probs=78.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
+..+|||+|||+|.++..++.. .++++|+++..+..+. +.+...++ ++.+...|.... +++++||+|++.
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~- 188 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAE-SNLTKWGLIERVTIKVRDISEG-FDEKDVDALFLD- 188 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHH-HHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEEC-
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEEC-
Confidence 3468999999999999888753 4556655554443332 12222254 577888887665 667899999963
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
.+++..++.++.++|+|||.+++..+.. .....+...++..+|...
T Consensus 189 -----~~~~~~~l~~~~~~L~pgG~l~~~~~~~--------~~~~~~~~~l~~~gf~~~ 234 (277)
T 1o54_A 189 -----VPDPWNYIDKCWEALKGGGRFATVCPTT--------NQVQETLKKLQELPFIRI 234 (277)
T ss_dssp -----CSCGGGTHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHSSEEEE
T ss_pred -----CcCHHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCcee
Confidence 2566679999999999999999988643 112334444455666543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=9.4e-09 Score=97.80 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=65.3
Q ss_pred CCeEEEECCCCchHHHHHhcC-------------CCccccCChhchhHHHHHHHHHcCCCcEEE-EecCCCCC-------
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-------------DIIAMSLAPNDVHENQIQFALERGIPSTLG-VLGTKRLP------- 274 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-------------~V~gvdis~~Dls~a~i~~A~erg~~~~~~-v~d~~~Lp------- 274 (615)
..+|||+|||+|.++..++.. .|+++|+++... ...+.+. .+|....+
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~~~ 91 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRILE 91 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHHHH
Confidence 478999999999999988753 366777766310 1245666 67765433
Q ss_pred -CCCCCceEEEeccc---ccccccch-------HHHHHHHHhccCCCeEEEEEcCC
Q 007165 275 -YPSRSFELAHCSRC---RIDWLQRD-------GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 275 -fpd~sFDlV~~s~~---~l~~~~d~-------~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+++++||+|+|..+ ..++..+. ..++.++.++|||||.|++.+..
T Consensus 92 ~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 92 VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 34568999998542 22333333 46899999999999999998753
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.3e-09 Score=102.95 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=69.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC---------CCccccCChhchhHHHHHHHHHcC------CCcEEEEecCCCCC----C
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---------DIIAMSLAPNDVHENQIQFALERG------IPSTLGVLGTKRLP----Y 275 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---------~V~gvdis~~Dls~a~i~~A~erg------~~~~~~v~d~~~Lp----f 275 (615)
+..+|||||||+|.++..++.. +|+++|+++..+..+.... .+.+ .++.+..+|..... .
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENI-KRDKPELLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHH-HHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHH-HHcCccccccCCEEEEECChHhcccccCc
Confidence 3468999999999999888753 4566665554443333222 2223 36788888877755 5
Q ss_pred CCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 276 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 276 pd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+.++||+|++.. .++++ +.++.++|||||++++..+.
T Consensus 159 ~~~~fD~I~~~~-~~~~~------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 159 ELGLFDAIHVGA-SASEL------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHCCEEEEEECS-BBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred cCCCcCEEEECC-chHHH------HHHHHHhcCCCcEEEEEEcc
Confidence 568899999887 46543 57889999999999998754
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-08 Score=105.70 Aligned_cols=126 Identities=19% Similarity=0.130 Sum_probs=80.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecc-
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSR- 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~- 287 (615)
++.+|||+|||+|..+..++.. .|+++|+++..+..+. +.+...|+ ++.+..+|+..++..+++||+|++..
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~-~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR-LNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 196 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHHhCCCeEEEEECChhhcccccccCCEEEEeCC
Confidence 3468999999999999988742 4677766665554443 22233355 67888888877765567899999731
Q ss_pred ----cccccccc----------------hHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 288 ----CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 288 ----~~l~~~~d----------------~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
..++..++ ...+|.++.++|||||++++++-... ..|.. ..+..++++..++++
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~--~~Ene---~~v~~~l~~~~~~~~ 270 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE--PEENE---FVIQWALDNFDVELL 270 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC--GGGTH---HHHHHHHHHSSEEEE
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCC--hHHhH---HHHHHHHhcCCCEEe
Confidence 12322221 14789999999999999999874432 12222 123445555555544
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-08 Score=103.61 Aligned_cols=104 Identities=11% Similarity=0.051 Sum_probs=72.1
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc-------CC--CcEEEEecCCCC-------CCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-------GI--PSTLGVLGTKRL-------PYPSR 278 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er-------g~--~~~~~v~d~~~L-------pfpd~ 278 (615)
+..+|||+|||+|.++..++.+. .+..+.+.|+++.+++.|+++ ++ ++.+..+|...+ +++++
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 34689999999999999887641 123444445566666666554 22 278888998776 36678
Q ss_pred CceEEEecccc----------------ccc-ccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 279 SFELAHCSRCR----------------IDW-LQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 279 sFDlV~~s~~~----------------l~~-~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+||+|+++--. .+. ......++.++.++|||||+|++..+.
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 99999986211 111 123567899999999999999997754
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=103.03 Aligned_cols=98 Identities=12% Similarity=0.054 Sum_probs=73.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..++ ++.+..+|+..++. .++||+|++...
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~-~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p- 195 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLC-ENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYV- 195 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHH-HHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCC-
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCc-
Confidence 3478999999999999998753 5777777766655444 23333444 57888999877744 578999997652
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
. +...++.++.++|+|||.++++...
T Consensus 196 ~----~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 196 H----KTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp S----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred c----cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 2 5567899999999999999998744
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-09 Score=106.96 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=70.4
Q ss_pred CCeEEEECCCCchHHHHHhc--------CCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCC---CCCC-CCceEE
Q 007165 216 IRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL---PYPS-RSFELA 283 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~--------~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~L---pfpd-~sFDlV 283 (615)
..+|||||||+|..+..|++ .+|+++|+++.++..+ +....++.+.++|.... ++.+ .+||+|
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a-----~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I 156 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----ASDMENITLHQGDCSDLTTFEHLREMAHPLI 156 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GGGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHH-----hccCCceEEEECcchhHHHHHhhccCCCCEE
Confidence 36899999999999888764 3577887777665433 33345688999998774 5433 479999
Q ss_pred EecccccccccchHHHHHHHHh-ccCCCeEEEEEcC
Q 007165 284 HCSRCRIDWLQRDGILLLELDR-LLRPGGYFVYSSP 318 (615)
Q Consensus 284 ~~s~~~l~~~~d~~~~L~ei~R-vLkPGG~Lvis~P 318 (615)
++.. . | .+...++.++.| +|||||+|++.+.
T Consensus 157 ~~d~-~-~--~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 157 FIDN-A-H--ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEES-S-C--SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EECC-c-h--HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 9765 2 3 366779999998 9999999999653
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.6e-09 Score=101.21 Aligned_cols=97 Identities=10% Similarity=0.123 Sum_probs=67.2
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCC-CCCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-PYPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~L-pfpd~sFDlV~~s~ 287 (615)
..+|||||||+|..+..++.. .|+++|+++..+..+... ....+. .+.+..+|.... +..++ ||+|++..
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRM-LHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHH-HHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 368999999999999999854 455665555444333321 122243 477888886543 54456 99999763
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
...+...++.++.++|||||++++...
T Consensus 135 ----~~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 135 ----DVFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp ----TTSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred ----ChhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 134567899999999999999998653
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.6e-09 Score=106.03 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=68.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHH-H-HHHcCCCcEEE--EecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQ-F-ALERGIPSTLG--VLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~-~-A~erg~~~~~~--v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||||||+|.++..+++. .|+++|+++ +...+..+ . +...+.++.+. ++|+..++ +++||+|+|.. +
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~-~ 149 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDV-G 149 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECC-C
T ss_pred CCCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeC-c
Confidence 3468999999999999998874 788888877 32110000 0 00011256777 78888776 68999999875 3
Q ss_pred cccccc----hH---HHHHHHHhccCCCe--EEEEEcCC
Q 007165 290 IDWLQR----DG---ILLLELDRLLRPGG--YFVYSSPE 319 (615)
Q Consensus 290 l~~~~d----~~---~~L~ei~RvLkPGG--~Lvis~P~ 319 (615)
++..+ .. .+|.++.++||||| .|++.+..
T Consensus 150 -~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 150 -ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp -CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred -ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 33222 11 37899999999999 99997643
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.2e-08 Score=102.39 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=68.7
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccC-ChhchhHHHHHHH----HHcCC------CcEEEEecCCCCC--C----
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSL-APNDVHENQIQFA----LERGI------PSTLGVLGTKRLP--Y---- 275 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdi-s~~Dls~a~i~~A----~erg~------~~~~~v~d~~~Lp--f---- 275 (615)
..+|||||||+|.++..++.. .|+++|+ ++..+..+..+.. ...++ ++.+...+..... +
T Consensus 80 ~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 159 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCT 159 (281)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHH
T ss_pred CCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhc
Confidence 468999999999999888754 5677776 5555544432221 12222 3555544433211 1
Q ss_pred CCCCceEEEecccccccccchHHHHHHHHhccC---C--CeEEEEEc
Q 007165 276 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLR---P--GGYFVYSS 317 (615)
Q Consensus 276 pd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLk---P--GG~Lvis~ 317 (615)
++++||+|+++. ++++.++...++.++.++|+ | ||.+++..
T Consensus 160 ~~~~fD~Ii~~d-vl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 160 GLQRFQVVLLAD-LLSFHQAHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp SCSSBSEEEEES-CCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred cCCCCCEEEEeC-cccChHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 357899999988 47778888999999999999 9 99877654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.77 E-value=5.7e-09 Score=104.16 Aligned_cols=103 Identities=15% Similarity=0.064 Sum_probs=66.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC------CCccccCChhchhHHHHHHHHHc--CC--C----------------------
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER--GI--P---------------------- 262 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~------~V~gvdis~~Dls~a~i~~A~er--g~--~---------------------- 262 (615)
...+|||+|||+|.++..++.. +|+++|+++..+..+........ ++ .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 3468999999999999888753 45666655544433331111000 11 1
Q ss_pred ---cE-------------EEEecCCCCCC-----CCCCceEEEecccccccc---------cchHHHHHHHHhccCCCeE
Q 007165 263 ---ST-------------LGVLGTKRLPY-----PSRSFELAHCSRCRIDWL---------QRDGILLLELDRLLRPGGY 312 (615)
Q Consensus 263 ---~~-------------~~v~d~~~Lpf-----pd~sFDlV~~s~~~l~~~---------~d~~~~L~ei~RvLkPGG~ 312 (615)
+. +..+|...... ..++||+|+|... +... .....++.++.++|+|||+
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp-~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP-YGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC-GGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCC-eeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 34 88888765321 3458999998752 3322 2235799999999999999
Q ss_pred EEEEcC
Q 007165 313 FVYSSP 318 (615)
Q Consensus 313 Lvis~P 318 (615)
++++..
T Consensus 210 l~~~~~ 215 (250)
T 1o9g_A 210 IAVTDR 215 (250)
T ss_dssp EEEEES
T ss_pred EEEeCc
Confidence 999543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.8e-09 Score=107.69 Aligned_cols=99 Identities=13% Similarity=0.163 Sum_probs=66.9
Q ss_pred CCCeEEEECCCC--chHHHHHh-----cCCCccccCChhchhHHHHHHHHHc--C---CCcEEEEecCCCCC----CC--
Q 007165 215 NIRNVLDVGCGV--ASFGAYLL-----SHDIIAMSLAPNDVHENQIQFALER--G---IPSTLGVLGTKRLP----YP-- 276 (615)
Q Consensus 215 ~~~~VLDIGCGt--G~~a~~L~-----~~~V~gvdis~~Dls~a~i~~A~er--g---~~~~~~v~d~~~Lp----fp-- 276 (615)
..++|||||||+ +..+..++ +.+|+++|.++ .|++.|+++ + .++.+.++|+.+++ .+
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp-----~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~ 152 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDP-----IVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPEL 152 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCH-----HHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCCh-----HHHHHHHHHhccCCCCcEEEEEecccChhhhhccccc
Confidence 357899999997 33334333 23566665554 455555443 1 24788999987752 11
Q ss_pred CCCce-----EEEecccccccccch---HHHHHHHHhccCCCeEEEEEcCC
Q 007165 277 SRSFE-----LAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 277 d~sFD-----lV~~s~~~l~~~~d~---~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.++|| .|+++. ++||+++. ..++.++.+.|+|||+|+++...
T Consensus 153 ~~~~D~~~p~av~~~a-vLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~ 202 (277)
T 3giw_A 153 RDTLDLTRPVALTVIA-IVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT 202 (277)
T ss_dssp HTTCCTTSCCEEEEES-CGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred ccccCcCCcchHHhhh-hHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence 34565 466554 79999884 57999999999999999998743
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.76 E-value=7.1e-09 Score=101.14 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=68.3
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCC-C-CC----CCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-YP----SRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~L-p-fp----d~sFDl 282 (615)
..+|||||||+|.++..++.. +|+++|+++..+..+. +.+.+.+. .+.+.++|+... + +. .++||+
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAK-EYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 468999999999999999864 4556655554443333 22223344 378888886432 2 11 178999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|++.. ...+...++.++.++|||||+|++....
T Consensus 144 v~~~~----~~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 144 IYIDA----DKANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EEECS----CGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEECC----CHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 99544 2445677999999999999999997644
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.9e-09 Score=108.32 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=68.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHc-------CCCcEEE--EecCCCCCCCCCCceEEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER-------GIPSTLG--VLGTKRLPYPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~er-------g~~~~~~--v~d~~~Lpfpd~sFDlV~ 284 (615)
++.+|||||||+|.++..+++. .|+++|+++ +.. .++++ +.++.+. ++|+..+| +++||+|+
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~-----~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vv 153 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGT-----SGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVL 153 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCC-----TTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEE
T ss_pred CCCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhh-----hhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEE
Confidence 3468999999999999999874 788888877 321 11111 1256777 88888776 68999999
Q ss_pred ecccccccccc----hH---HHHHHHHhccCCCe--EEEEEcCC
Q 007165 285 CSRCRIDWLQR----DG---ILLLELDRLLRPGG--YFVYSSPE 319 (615)
Q Consensus 285 ~s~~~l~~~~d----~~---~~L~ei~RvLkPGG--~Lvis~P~ 319 (615)
|.. + ++..+ .. .+|.++.++||||| .|++.+..
T Consensus 154 sd~-~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 154 CDI-G-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp ECC-C-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred ECC-C-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 876 3 33222 11 37899999999999 99987643
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=9.7e-09 Score=108.96 Aligned_cols=98 Identities=18% Similarity=0.053 Sum_probs=72.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
...+|||||||+|.++..++++. ..+.+...|+ +.+++.|++. .++.+..+|... |++++ |+|++.+ ++|+.+
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~-vlh~~~ 273 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKW-ILHDWS 273 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEES-CGGGSC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehH-HhccCC
Confidence 45789999999999999998641 1122333455 4455555433 468999999877 77754 9999998 587665
Q ss_pred ch--HHHHHHHHhccCCCeEEEEEcCC
Q 007165 295 RD--GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 295 d~--~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+. ..+|++++++|||||+|++.+..
T Consensus 274 d~~~~~~L~~~~~~L~pgG~l~i~e~~ 300 (364)
T 3p9c_A 274 DQHCATLLKNCYDALPAHGKVVLVQCI 300 (364)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 54 47999999999999999998743
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-08 Score=99.72 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=67.7
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCC-C-CC---CCCceEE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-YP---SRSFELA 283 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~L-p-fp---d~sFDlV 283 (615)
..+|||||||+|.++..++.. .|+++|+++..+..+. +.+.+.+. .+.+..+|+... + ++ .++||+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIAR-SNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 468999999999999999865 4555555544443333 12222344 478888886432 2 11 2679999
Q ss_pred EecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 284 ~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++... ......++.++.++|||||++++..+.
T Consensus 138 ~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 138 FIDAD----KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp EECSC----GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EEcCC----cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 97652 344567999999999999999987654
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-08 Score=104.75 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=66.7
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHc-----------CCCcEEEEecCCCC--CCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-----------GIPSTLGVLGTKRL--PYP 276 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~er-----------g~~~~~~v~d~~~L--pfp 276 (615)
++.+|||+|||+|.++..++. ..|+++|+++..+..+........ ..++.+..+|.... +++
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~ 184 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 184 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC
Confidence 346899999999999988875 346677666655544432222110 13578888998776 567
Q ss_pred CCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 277 d~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+++||+|++.. +++..++.++.++|||||.|++..+.
T Consensus 185 ~~~fD~V~~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 185 SLTFDAVALDM------LNPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ---EEEEEECS------SSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CCCeeEEEECC------CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 78899999753 23344899999999999999998764
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-08 Score=103.79 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=68.7
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCC-CCCCCCCce
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSFE 281 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~-Lpfpd~sFD 281 (615)
+.+|||||||+|.++..+++. +|+++| +++.+++.|++. ..++.+..+|+.. ++..+++||
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vD-----id~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 165 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCE-----VDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFD 165 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEE-----SCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEE-----CCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCce
Confidence 478999999999999999865 345554 445555555443 2467888888644 344467899
Q ss_pred EEEeccccccccc-----chHHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 282 LAHCSRCRIDWLQ-----RDGILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 282 lV~~s~~~l~~~~-----d~~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
+|++.. ..++.. ....++.++.++|+|||.|++...+.+
T Consensus 166 ~Ii~d~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 209 (296)
T 1inl_A 166 VIIIDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF 209 (296)
T ss_dssp EEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred EEEEcC-CCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcc
Confidence 999743 222121 226799999999999999999876544
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-08 Score=105.56 Aligned_cols=128 Identities=5% Similarity=-0.012 Sum_probs=80.4
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCC---cEEEEecCCCCCC----CCCCceEEEec
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRLPY----PSRSFELAHCS 286 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~---~~~~v~d~~~Lpf----pd~sFDlV~~s 286 (615)
..+|||+|||+|.++..++.. .|+++|+++..+..+..+ +...++. +.+.++|+..+.. ..++||+|++.
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n-~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d 232 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKEN-QVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 232 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHH-HHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence 468999999999999998864 466666665555444322 2223443 7888888655421 14689999983
Q ss_pred cc---------ccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 287 RC---------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 287 ~~---------~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
-- ++++..+...++.++.++|+|||+|+++.........+ .....+...++...+.+.
T Consensus 233 PP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~--~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 233 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFY--SMHELMRETMRGAGGVVA 299 (332)
T ss_dssp CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHH--HHHHHHHHHTTTSCSEEE
T ss_pred CccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHH--HHHHHHHHHHHHcCCeEE
Confidence 21 12344556789999999999999988876543222222 122333444555555443
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-08 Score=105.97 Aligned_cols=105 Identities=14% Similarity=0.067 Sum_probs=69.6
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCC-CCCCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~-Lpfpd~sFDlV~~ 285 (615)
+++|||||||+|.++..++... ....+...|+++.+++.|+++ ..++.+..+|+.. ++..+++||+|++
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 4789999999999999998641 122344445566666666654 2346788888654 3334678999997
Q ss_pred cccccccccch----HHHHHHHHhccCCCeEEEEEcCCCCC
Q 007165 286 SRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYA 322 (615)
Q Consensus 286 s~~~l~~~~d~----~~~L~ei~RvLkPGG~Lvis~P~~~~ 322 (615)
.. ..++.+.. ..+++++.++|+|||.+++.....+.
T Consensus 188 d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~ 227 (314)
T 2b2c_A 188 DS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWL 227 (314)
T ss_dssp CC-C-------------HHHHHHHHEEEEEEEEEECCCTTT
T ss_pred cC-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCccc
Confidence 54 23322221 56899999999999999998755553
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.8e-09 Score=104.04 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=74.3
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCC-CCC-----CCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-PYP-----SRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~L-pfp-----d~sFDl 282 (615)
.++|||||||+|..+..|+.. .|+++|+++..+..+. +.+...++ ++.+.++|+... +.. +++||+
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAH-PYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSH-HHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 468999999999999998752 6888998887776655 33344454 588888887543 221 478999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|++... ..+...++.++.++|||||+|++....
T Consensus 140 V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 140 IFIDAD----KTNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp EEEESC----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEEcCC----hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 997542 345567899999999999999997643
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.6e-08 Score=96.30 Aligned_cols=92 Identities=13% Similarity=0.041 Sum_probs=66.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCC-----------CCCce
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-----------SRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfp-----------d~sFD 281 (615)
++.+|||+|||+|.++..+++. .|+++|+++... ...+.+.++|+...+.. .++||
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-----------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D 93 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-----------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVD 93 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-----------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEE
T ss_pred CCCEEEEEeecCCHHHHHHHHcCCcEEEEecccccc-----------CCCeEEEEccccCHHHHHHHHHHhhcccCCcce
Confidence 3578999999999999999865 577888776421 23578889998776521 14899
Q ss_pred EEEecccccc----cccc-------hHHHHHHHHhccCCCeEEEEEcC
Q 007165 282 LAHCSRCRID----WLQR-------DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 282 lV~~s~~~l~----~~~d-------~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+|+|.. ... +..+ ...++.++.++|||||.|++...
T Consensus 94 ~Vlsd~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 94 DVVSDA-MAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp EEEECC-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEecCC-CcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 999753 111 1111 24578999999999999998763
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-08 Score=103.55 Aligned_cols=106 Identities=16% Similarity=0.126 Sum_probs=69.8
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCC-CCCCCCCceEEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~-Lpfpd~sFDlV~ 284 (615)
.+++|||||||+|.++..++... ....+...|+++.+++.|+++ ..++.+..+|+.. ++..+++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 34789999999999999998651 112333334555555555543 3457888888654 344568899999
Q ss_pred ecccccccccc----hHHHHHHHHhccCCCeEEEEEcCCCCC
Q 007165 285 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYA 322 (615)
Q Consensus 285 ~s~~~l~~~~d----~~~~L~ei~RvLkPGG~Lvis~P~~~~ 322 (615)
+.. ..++.+. ...+++++.++|+|||.|++.....|.
T Consensus 174 ~d~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 214 (304)
T 2o07_A 174 TDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWL 214 (304)
T ss_dssp EEC-C-----------CHHHHHHHHHEEEEEEEEEEEECTTT
T ss_pred ECC-CCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 754 2332221 245899999999999999998755443
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.3e-08 Score=102.22 Aligned_cols=105 Identities=14% Similarity=0.142 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCC-CCCCCCCceEEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~-Lpfpd~sFDlV~ 284 (615)
.+++|||||||+|.++..++... ....+...|+++.+++.|++. ..++.+..+|+.. ++..+++||+|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 35789999999999999998641 112333345555555665543 2357888888654 333457899999
Q ss_pred ecccccccccc----hHHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 285 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 285 ~s~~~l~~~~d----~~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
+.. ..++.+. ...++.++.++|+|||.+++...+.+
T Consensus 154 ~d~-~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~ 193 (275)
T 1iy9_A 154 VDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPW 193 (275)
T ss_dssp ESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred ECC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcc
Confidence 754 2332221 25699999999999999999875544
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-08 Score=100.27 Aligned_cols=94 Identities=13% Similarity=0.178 Sum_probs=68.6
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCC-CCC--CCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRL-PYP--SRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~L-pfp--d~sFDl 282 (615)
..+|||+|||+|.++..++.. .|+++|+++ .+++.|+++ +. .+.+..+|.... +.. +++||+
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~ 129 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDE-----RRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDV 129 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCH-----HHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccE
Confidence 468999999999999988754 455665554 444444433 44 478888887653 432 578999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
|++... . .+...++.++.++|+|||.+++.+.
T Consensus 130 I~~~~~-~---~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 130 LFIDAA-K---GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EEEEGG-G---SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred EEECCC-H---HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 997652 2 3667899999999999999999754
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-08 Score=103.23 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=74.3
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCCC-CCCCCCceEEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-PYPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~L-pfpd~sFDlV~ 284 (615)
.+++|||||||+|.++..++... ....+...|+++.+++.|++. ..++.+..+|+... +..+++||+|+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 34789999999999999998641 123444456666677777664 23578888886542 22357899999
Q ss_pred ecccccccccc--h--HHHHHHHHhccCCCeEEEEEcCCCCC
Q 007165 285 CSRCRIDWLQR--D--GILLLELDRLLRPGGYFVYSSPEAYA 322 (615)
Q Consensus 285 ~s~~~l~~~~d--~--~~~L~ei~RvLkPGG~Lvis~P~~~~ 322 (615)
+.. ..++.+. . ..+++++.++|+|||.+++...+.+.
T Consensus 157 ~d~-~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~ 197 (283)
T 2i7c_A 157 VDS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWI 197 (283)
T ss_dssp EEC-CCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTT
T ss_pred EcC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCccc
Confidence 754 2333222 1 57999999999999999998766543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.3e-08 Score=110.22 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=70.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||||||+|.++..++.. +|+++|+++ ++..+. +.+++.++ ++.+..+|...++++ ++||+|++.. .
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~-~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~-~ 233 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEP-M 233 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCC-C
T ss_pred CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHH-HHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeC-c
Confidence 3478999999999999988764 466666654 332222 33334454 588999998888766 6899999865 3
Q ss_pred ccccc--chHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQ--RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~--d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+++.. +....+.++.++|||||++++..
T Consensus 234 ~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 234 GYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp HHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred hHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 44443 33557789999999999999643
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.2e-08 Score=105.93 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=72.7
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecc--c
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSR--C 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~--~ 288 (615)
.++|||||||+|.++...+++ .|+++|.++ +... ..+.++..|. .+.+..++++.+.++ .+||+|++-. .
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~-a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~ 160 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQ-AREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGY 160 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHH-HHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBT
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHH-HHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccc
Confidence 468999999999988777654 689999875 3433 3355666665 478888999888877 6899999732 1
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEE
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvi 315 (615)
.+.+-.....++....|+|||||.++-
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cccccchhhhHHHHHHhhCCCCceECC
Confidence 244444567788899999999999884
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-08 Score=106.02 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=67.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC-CCccccC----ChhchhHHHHHHHHHcC-CCcEEEEe-cCCCCCCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-DIIAMSL----APNDVHENQIQFALERG-IPSTLGVL-GTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvdi----s~~Dls~a~i~~A~erg-~~~~~~v~-d~~~Lpfpd~sFDlV~~s~ 287 (615)
++.+|||||||+|.++..+++. .|+++|+ +..++.... +...+ ..+.+.++ |+..++ .++||+|+|..
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~ 156 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP---MSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDI 156 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC---CCSTTGGGEEEECSCCTTTSC--CCCCSEEEECC
T ss_pred CCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHH---hhhcCCCCeEEEeccccccCC--cCCCCEEEECC
Confidence 3468999999999999999875 6788887 332221100 01111 23667776 666654 57899999865
Q ss_pred cc--cccccchH---HHHHHHHhccCCCeEEEEEcCCC
Q 007165 288 CR--IDWLQRDG---ILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 288 ~~--l~~~~d~~---~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+. .++..+.. .+|.++.++|||||.|++.....
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 31 23333332 47899999999999999976543
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=6.8e-08 Score=102.93 Aligned_cols=117 Identities=18% Similarity=0.159 Sum_probs=80.0
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
..+|||+|||+|.++..++.. .|+|+|+++.++..+. +.+...|+ .+.+.++|+..+++++++||+|+++.-
T Consensus 218 ~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~-~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP- 295 (373)
T 3tm4_A 218 GGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAE-MNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP- 295 (373)
T ss_dssp SCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHH-HHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC-
T ss_pred CCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC-
Confidence 467999999999999988754 5667766666554444 23333465 689999999999988899999998531
Q ss_pred cc-------cccch-HHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 290 ID-------WLQRD-GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 290 l~-------~~~d~-~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
+. ...+. ..++.++.++| ||.+++.+++. ..++..+++.+|+...
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~-----------~~~~~~~~~~G~~~~~ 348 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEK-----------KAIEEAIAENGFEIIH 348 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCH-----------HHHHHHHHHTTEEEEE
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCH-----------HHHHHHHHHcCCEEEE
Confidence 21 11222 56889999999 55555555432 3445566677777654
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-08 Score=107.02 Aligned_cols=97 Identities=9% Similarity=0.018 Sum_probs=72.9
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d 295 (615)
..+|||||||+|.++..++++. ..+.+...|+ +.+++.|++. ..+.+..+|... +++ +||+|++.. ++|+.++
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~-vlh~~~d 266 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKW-VLHDWND 266 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEES-CGGGSCH
T ss_pred CCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEcc-cccCCCH
Confidence 4689999999999999998652 1122333455 3455555432 347888888776 666 499999988 6888888
Q ss_pred hH--HHHHHHHhccCC---CeEEEEEcCC
Q 007165 296 DG--ILLLELDRLLRP---GGYFVYSSPE 319 (615)
Q Consensus 296 ~~--~~L~ei~RvLkP---GG~Lvis~P~ 319 (615)
.. .+|+++.++|+| ||++++.++.
T Consensus 267 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 295 (358)
T 1zg3_A 267 EQSLKILKNSKEAISHKGKDGKVIIIDIS 295 (358)
T ss_dssp HHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence 76 899999999999 9999997743
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-08 Score=104.85 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=72.2
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCC-CCCCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~-Lpfpd~sFDlV~~ 285 (615)
+.+|||||||+|.++..++... .+..+...|+++.+++.|+++ ..++.+..+|... ++..+++||+|++
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 4789999999999999998641 123444456666666776654 2357788888644 2333578999997
Q ss_pred ccccccccc--ch--HHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 286 SRCRIDWLQ--RD--GILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 286 s~~~l~~~~--d~--~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
.. ..++.+ .. ..++.++.++|+|||.+++...+.+
T Consensus 196 d~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 234 (321)
T 2pt6_A 196 DS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLW 234 (321)
T ss_dssp EC-CCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTT
T ss_pred CC-cCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcc
Confidence 54 222211 11 6799999999999999999875554
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-07 Score=90.64 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=65.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+..+|||+|||+|.++..++... ...+.+.|+++.+++.|+++..++.+.++|+..++ ++||+|++.. .+++..
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~-p~~~~~ 124 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNP-PFGSVV 124 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECC-CC----
T ss_pred CCCEEEEEeCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECC-Cchhcc
Confidence 34689999999999999988651 11244446666677777766447889999988875 7899999887 577665
Q ss_pred c--hHHHHHHHHhccCCCeEEEEE
Q 007165 295 R--DGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 295 d--~~~~L~ei~RvLkPGG~Lvis 316 (615)
+ ...++.++.++| |+.+++.
T Consensus 125 ~~~~~~~l~~~~~~~--g~~~~~~ 146 (200)
T 1ne2_A 125 KHSDRAFIDKAFETS--MWIYSIG 146 (200)
T ss_dssp ---CHHHHHHHHHHE--EEEEEEE
T ss_pred CchhHHHHHHHHHhc--CcEEEEE
Confidence 4 246899999999 5544444
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-08 Score=101.53 Aligned_cols=105 Identities=16% Similarity=0.123 Sum_probs=72.5
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCC----CCCCceEEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY----PSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpf----pd~sFDlV~ 284 (615)
++.+|||+|||+|..+..+++ ..|+++|+++..+..+. +.+...|. ++.+..+|+..++. .+++||+|+
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~-~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALK-SNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHH-HHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence 346899999999999988875 35677766665544333 22333355 67888888776654 257899999
Q ss_pred ecc-c----ccc------------cccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 285 CSR-C----RID------------WLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 285 ~s~-~----~l~------------~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.- | .++ .......++.++.++|||||++++++...
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 751 0 111 11344679999999999999999988554
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-08 Score=105.60 Aligned_cols=99 Identities=14% Similarity=0.133 Sum_probs=70.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc----------CCCcEEEEecCCC-CCCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----------GIPSTLGVLGTKR-LPYPSRS 279 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er----------g~~~~~~v~d~~~-Lpfpd~s 279 (615)
.+++|||||||+|.++..+++. +|+++|+ ++.+++.|+++ ..++.+..+|+.. ++..+++
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi-----d~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~ 151 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDI-----DGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEER 151 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEES-----CHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEEC-----CHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCC
Confidence 3478999999999999999865 3455554 44555555432 2457888888655 3444688
Q ss_pred ceEEEeccccccc---cc--c--hHHHHHHHHhccCCCeEEEEEcCC
Q 007165 280 FELAHCSRCRIDW---LQ--R--DGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 280 FDlV~~s~~~l~~---~~--d--~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
||+|++.. ..++ .+ . ...+++++.++|+|||.|++....
T Consensus 152 fD~Ii~d~-~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 152 YDVVIIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EEEEEEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred ccEEEECC-CCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 99999865 3444 11 1 267999999999999999997543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.65 E-value=4.4e-08 Score=99.69 Aligned_cols=94 Identities=15% Similarity=0.113 Sum_probs=69.8
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCCCCCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~Lpfpd~sFDlV~~ 285 (615)
.+++|||||||+|.++..++.. . ..+...|+++.+++.|++. ..++.+..+|+.... ++||+|++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~ 145 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFC 145 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEE
Confidence 3478999999999999988865 1 3445556666666666543 235677888876654 78999996
Q ss_pred cccccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.. .++..++.++.++|+|||.+++.....
T Consensus 146 d~------~dp~~~~~~~~~~L~pgG~lv~~~~~~ 174 (262)
T 2cmg_A 146 LQ------EPDIHRIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_dssp SS------CCCHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred CC------CChHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 52 345569999999999999999976444
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.4e-08 Score=102.31 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=68.9
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------------CCCcEEEEecCCC-CCCCCCC
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------------GIPSTLGVLGTKR-LPYPSRS 279 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------------g~~~~~~v~d~~~-Lpfpd~s 279 (615)
+.+|||||||+|.++..++.. ....+...|+++.+++.|++. ..++.+..+|+.. ++. +++
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 478999999999999999865 122344445555565665543 2346778887543 222 578
Q ss_pred ceEEEeccccccccc--c--hHHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 280 FELAHCSRCRIDWLQ--R--DGILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 280 FDlV~~s~~~l~~~~--d--~~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
||+|++.. ..++.+ . ...+++++.++|+|||.+++.....+
T Consensus 153 fD~Ii~d~-~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~ 197 (281)
T 1mjf_A 153 FDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVY 197 (281)
T ss_dssp EEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred eeEEEECC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcc
Confidence 99999754 233221 1 25689999999999999999764443
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-08 Score=101.11 Aligned_cols=119 Identities=12% Similarity=0.160 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhc----CCCccccCChhchhHHHHHHHHHcCCC--cEEE
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIP--STLG 266 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~----~~V~gvdis~~Dls~a~i~~A~erg~~--~~~~ 266 (615)
..+...+..++...... ..+..+|||+|||+|.++..++. ..|+++|+++.++..+.. .+...++. +.+.
T Consensus 46 ~~~~~~~~~~~~~~~~~---~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~ 121 (254)
T 2h00_A 46 LNYIHWVEDLIGHQDSD---KSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKK-NVEQNNLSDLIKVV 121 (254)
T ss_dssp HHHHHHHHHHHCCCCGG---GCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEE
T ss_pred HHHHHHHHHHHhhcccc---CCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH-HHHHcCCCccEEEE
Confidence 34555555666533210 02356899999999998887764 367777777666554442 23334543 7888
Q ss_pred EecCCCC---CCC---CCCceEEEeccccccccc---------------chHHHHHHHHhccCCCeEEEEE
Q 007165 267 VLGTKRL---PYP---SRSFELAHCSRCRIDWLQ---------------RDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 267 v~d~~~L---pfp---d~sFDlV~~s~~~l~~~~---------------d~~~~L~ei~RvLkPGG~Lvis 316 (615)
.+|+... +++ +++||+|+|... ++... ....++.++.|+|||||.+.+.
T Consensus 122 ~~d~~~~~~~~~~~~~~~~fD~i~~npp-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 122 KVPQKTLLMDALKEESEIIYDFCMCNPP-FFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp ECCTTCSSTTTSTTCCSCCBSEEEECCC-CC-------------------------CTTTTHHHHTHHHHH
T ss_pred EcchhhhhhhhhhcccCCcccEEEECCC-CccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 8887652 444 368999998742 22221 1123567888999999988764
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.6e-08 Score=99.05 Aligned_cols=97 Identities=12% Similarity=0.097 Sum_probs=69.1
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCC-C-C-----CCCCce
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-Y-----PSRSFE 281 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~L-p-f-----pd~sFD 281 (615)
.++|||||||+|..+..++.. .|+++|+++..+..+. +...+.+. ++.+..+|+... + + ++++||
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~-~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL-PVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 468999999999999888743 5667776665554443 22233354 477888886542 3 1 157899
Q ss_pred EEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 282 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 282 lV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+|++... ..+...++.++.++|||||+|++..
T Consensus 159 ~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 159 FIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 9997542 3456779999999999999999865
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.1e-08 Score=104.49 Aligned_cols=105 Identities=18% Similarity=0.188 Sum_probs=73.4
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC--CCCCCceEEEe-
Q 007165 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHC- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp--fpd~sFDlV~~- 285 (615)
++.+|||+|||+|..+..++. ..|+++|+++..+.... +.+...|+ ++.+..+|...++ +++++||+|++
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~-~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D 337 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLK-DFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLD 337 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH-HHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEc
Confidence 346899999999999998875 24666766655443333 22233365 5788888887776 56688999995
Q ss_pred ---c-ccccccccch----------------HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 ---S-RCRIDWLQRD----------------GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 ---s-~~~l~~~~d~----------------~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+ ...++..++. ..+|.++.++|||||++++++...
T Consensus 338 ~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 338 APCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp CCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2 2233333332 468999999999999999988554
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.7e-08 Score=94.53 Aligned_cols=98 Identities=14% Similarity=0.201 Sum_probs=66.6
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCC-CC-------------
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP------------- 274 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~-Lp------------- 274 (615)
..+|||||||+|.++..++.. .|+++|+++..+..+. +...+.+. .+.+..+|... ++
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVAR-KYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 468999999999999988753 4556655544443332 12222244 26777777543 12
Q ss_pred -CCC--CCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 275 -YPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 275 -fpd--~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
|++ ++||+|++... ..+...++.++.++|+|||++++...
T Consensus 140 ~f~~~~~~fD~I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDAD----KENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp TTCCSTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred cccCCCCCcCEEEEeCC----HHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 333 78999997642 34556789999999999999999763
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.1e-07 Score=98.93 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=81.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCC-CCC-CCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR-LPY-PSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~-Lpf-pd~sFDlV~~s~ 287 (615)
++.+|||+| |+|.++..++.. .|+++|+++.++..+. +.+.+.|+ ++.+..+|+.. +|. .+++||+|++..
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~-~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIE-KAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHH-HHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 347899999 999999888743 5677776666554443 23333355 68899999877 764 457899999875
Q ss_pred cccccccchHHHHHHHHhccCCCeE-EEEEcCCCCCCChhHHHHHHHHHHHHh-hcceEE
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGY-FVYSSPEAYAHDPENRRIWNAMYDLLK-SMCWKI 345 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~-Lvis~P~~~~~~~e~~~~w~~l~~La~-~l~W~l 345 (615)
.++.. ....++.++.++|||||. ++++.... ......|..+..++. ...+..
T Consensus 250 -p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~~----~~~~~~~~~~~~~l~~~~g~~~ 303 (373)
T 2qm3_A 250 -PETLE-AIRAFVGRGIATLKGPRCAGYFGITRR----ESSLDKWREIQKLLLNEFNVVI 303 (373)
T ss_dssp -CSSHH-HHHHHHHHHHHTBCSTTCEEEEEECTT----TCCHHHHHHHHHHHHHTSCCEE
T ss_pred -CCchH-HHHHHHHHHHHHcccCCeEEEEEEecC----cCCHHHHHHHHHHHHHhcCcch
Confidence 34433 257799999999999994 45554321 111223455566665 555544
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.58 E-value=4e-08 Score=97.32 Aligned_cols=99 Identities=19% Similarity=0.159 Sum_probs=67.5
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCC----CCCCCC--CCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTK----RLPYPS--RSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~----~Lpfpd--~sFDl 282 (615)
..+|||||||+|..+..++.. .++++|+++..+..+.. ...+.+. .+.+..+|+. .++..+ ++||+
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKK-YWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH-HHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 368999999999999999864 35556555444333321 1122244 3677887753 233334 78999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|++... ..+...++.++.++|+|||++++....
T Consensus 152 V~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 152 IFIDAD----KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EEECSC----GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 996642 345677999999999999999997643
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-07 Score=103.04 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=76.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--CCCCCceEEEe---
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHC--- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--fpd~sFDlV~~--- 285 (615)
++.+|||+|||+|..+..+++. .|+++|+++..+.... +.+...|.++.+..+|...++ +++++||+|++
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~-~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 324 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 324 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCC
Confidence 3468999999999999988753 5778887776665444 334445777888889988776 56689999995
Q ss_pred -cc-cccccccch----------------HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 -SR-CRIDWLQRD----------------GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 -s~-~~l~~~~d~----------------~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+. ..++..++. ..++.++.++|||||++++++-..
T Consensus 325 csg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 325 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 22 123333332 368999999999999999988544
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-07 Score=100.00 Aligned_cols=125 Identities=11% Similarity=0.033 Sum_probs=83.9
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCC-CCC---CCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKR-LPY---PSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~-Lpf---pd~sFDlV~~ 285 (615)
..+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..++ ++.+.++|+.. ++. ...+||+|++
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~-~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~ 291 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSL-AHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 291 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHH-HHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence 468999999999999999863 5888888887776555 33444454 57889988654 221 2458999997
Q ss_pred ccc--------ccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceE
Q 007165 286 SRC--------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (615)
Q Consensus 286 s~~--------~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~ 344 (615)
.-- ......+...++.++.++|+|||.++++...... .. ...++.+...+....+.
T Consensus 292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~-~~--~~~~~~i~~~~~~~g~~ 355 (385)
T 2b78_A 292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM-TV--SQFKKQIEKGFGKQKHT 355 (385)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS-CH--HHHHHHHHHHHTTCCCE
T ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC-CH--HHHHHHHHHHHHHcCCc
Confidence 421 1222334456788899999999999998854421 11 12345555566666554
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-07 Score=99.57 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCchHHHHHhc---------CCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLS---------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~---------~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~ 285 (615)
...+|||+|||+|.++..+++ ..+.|+|+++..+..+.... ...|+++.+..+|+... .+.++||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~-~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGA-DLQRQKMTLLHQDGLAN-LLVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHH-HHHTCCCEEEESCTTSC-CCCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHH-HhCCCCceEEECCCCCc-cccCCccEEEE
Confidence 346899999999999887763 23556655554443333222 22366788888886553 34578999998
Q ss_pred cccccccccch------------------HHHHHHHHhccCCCeEEEEEcCCCCC
Q 007165 286 SRCRIDWLQRD------------------GILLLELDRLLRPGGYFVYSSPEAYA 322 (615)
Q Consensus 286 s~~~l~~~~d~------------------~~~L~ei~RvLkPGG~Lvis~P~~~~ 322 (615)
+- .+++.+.. ..++.++.+.|+|||++++..|+.+.
T Consensus 208 NP-Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~ 261 (344)
T 2f8l_A 208 DL-PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMF 261 (344)
T ss_dssp EC-CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGG
T ss_pred CC-CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhc
Confidence 75 34443222 14799999999999999999877543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.6e-07 Score=91.44 Aligned_cols=120 Identities=14% Similarity=0.044 Sum_probs=84.9
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+.+|||||||+|.++..++.. .|+++|+++..+..+.. .+...|+ .+.+..+|......++..||+|+.....
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~-N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmG 100 (230)
T 3lec_A 22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALK-NVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMG 100 (230)
T ss_dssp TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHH-HHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhhccccccccCEEEEeCCc
Confidence 468999999999999998864 46778777766655543 3334455 4788999977665554579998865521
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEee
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~ 349 (615)
- .-...++.+..+.|+++|+|+++... . ...++..+....|.+..+.
T Consensus 101 g---~lI~~IL~~~~~~l~~~~~lIlqp~~----~------~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 101 G---RLIADILNNDIDKLQHVKTLVLQPNN----R------EDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp H---HHHHHHHHHTGGGGTTCCEEEEEESS----C------HHHHHHHHHHTTEEEEEEE
T ss_pred h---HHHHHHHHHHHHHhCcCCEEEEECCC----C------hHHHHHHHHHCCCEEEEEE
Confidence 1 22456888999999999999987632 1 3456666777788877554
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-07 Score=96.84 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=67.6
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCc---eEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSF---ELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sF---DlV~~s~ 287 (615)
..+|||+|||+|.++..++.. +|+++|+++..+..+. +.+...++. +.+..+|... +++ ++| |+|+++-
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~-~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnP 200 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIAR-KNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSNP 200 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHH-HHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEECC
T ss_pred CCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEcC
Confidence 357999999999999988754 5666666555544333 222333553 7888888765 223 579 9999861
Q ss_pred c-----------cccccc--------chHHHHHHHH-hccCCCeEEEEEcCC
Q 007165 288 C-----------RIDWLQ--------RDGILLLELD-RLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~-----------~l~~~~--------d~~~~L~ei~-RvLkPGG~Lvis~P~ 319 (615)
- +. |.+ +...+++++. +.|+|||+|++..+.
T Consensus 201 Pyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 201 PYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp CCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred CCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 0 11 221 1226899999 999999999997654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.7e-08 Score=96.25 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=68.0
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCC-C-CCC----CCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-YPS----RSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~L-p-fpd----~sFDl 282 (615)
..+|||||||+|.++..++.. +++++|+++..+..+. +.....+. ++.+..+|+... + +++ ++||+
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGR-PLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHH-HHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 468999999999999999863 4666666655544333 22223344 578888875432 1 111 68999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
|++... ..+...++.++.++|+|||.+++...
T Consensus 149 v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 149 AVVDAD----KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEECSC----STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 997542 33456799999999999999999653
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-07 Score=93.23 Aligned_cols=120 Identities=11% Similarity=0.027 Sum_probs=83.2
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+.+|||||||+|.++..|+.. .|+++|+++..+..+. +.+...|+ .+.+..+|......++.+||+|+....
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~-~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm- 99 (244)
T 3gnl_A 22 NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQ-KQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM- 99 (244)
T ss_dssp SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH-HHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE-
T ss_pred CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEEecchhhccCccccccEEEEeCC-
Confidence 468999999999999999864 4677777766665554 33334465 378888887665544446999886552
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEee
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~ 349 (615)
.- .-...++.+..+.|+++|+|+++... . ...++..+....|.+..+.
T Consensus 100 Gg--~lI~~IL~~~~~~L~~~~~lIlq~~~----~------~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 100 GG--TLIRTILEEGAAKLAGVTKLILQPNI----A------AWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp CH--HHHHHHHHHTGGGGTTCCEEEEEESS----C------HHHHHHHHHHHTEEEEEEE
T ss_pred ch--HHHHHHHHHHHHHhCCCCEEEEEcCC----C------hHHHHHHHHHCCCEEEEEE
Confidence 11 22456889999999999999997632 1 2455666677788876443
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.1e-08 Score=100.95 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=72.4
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC-----CCcEEEEecCCCC--CCCCCCceEEEecccc
Q 007165 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-----IPSTLGVLGTKRL--PYPSRSFELAHCSRCR 289 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg-----~~~~~~v~d~~~L--pfpd~sFDlV~~s~~~ 289 (615)
.+|||||||+|.++..+++.. .++.+...|+++.+++.|++.- .++.+.++|+..+ .+++++||+|++.. .
T Consensus 91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~-~ 168 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV-F 168 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC-S
T ss_pred CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC-C
Confidence 489999999999999998731 1234555577777778887652 3578888886543 34568999999753 2
Q ss_pred ccc-cc---chHHHHHHHHhccCCCeEEEEEcC
Q 007165 290 IDW-LQ---RDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 l~~-~~---d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.++ .+ ....+++++.++|+|||+|++...
T Consensus 169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 222 11 126799999999999999998764
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=5.8e-07 Score=89.68 Aligned_cols=119 Identities=13% Similarity=0.051 Sum_probs=82.3
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecC-CCCCCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGT-KRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~-~~Lpfpd~sFDlV~~s~~ 288 (615)
+.+|||||||+|.++..++.. .|+++|+++..+..+. +.++..|+ .+.+..+|. ..++. ...||+|+...+
T Consensus 16 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~-~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~IviaG~ 93 (225)
T 3kr9_A 16 GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAV-KNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIAGM 93 (225)
T ss_dssp TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH-HHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEEECchhhhccc-CcCCCEEEEcCC
Confidence 468999999999999998864 4777877776665554 33344465 478888886 34442 126999886552
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEee
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~ 349 (615)
.- .-...++.+....|+|+|+|+++... . ...+...+...+|.+..+.
T Consensus 94 Gg---~~i~~Il~~~~~~L~~~~~lVlq~~~----~------~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 94 GG---RLIARILEEGLGKLANVERLILQPNN----R------EDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp CH---HHHHHHHHHTGGGCTTCCEEEEEESS----C------HHHHHHHHHHTTEEEEEEE
T ss_pred Ch---HHHHHHHHHHHHHhCCCCEEEEECCC----C------HHHHHHHHHHCCCEEEEEE
Confidence 11 12467899999999999999996531 1 2455666777789877653
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.52 E-value=5.7e-07 Score=86.36 Aligned_cols=113 Identities=11% Similarity=0.122 Sum_probs=74.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc----CCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
+..+|||+|||+|.++..++.. .++++|++ +.+++.|+++ ++++.+..+|+..++ ++||+|++..
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~-----~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~ 120 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVD-----KEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNP 120 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESC-----HHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECC
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECC-----HHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcC
Confidence 3468999999999999999865 35566554 4444555443 447888999988765 5899999876
Q ss_pred ccccccc--chHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 288 CRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 288 ~~l~~~~--d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
.++... ....++.++.++| ||.+++..++ .+ ....+...++..+|.+.
T Consensus 121 -p~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~~-----~~---~~~~~~~~l~~~g~~~~ 170 (207)
T 1wy7_A 121 -PFGSQRKHADRPFLLKAFEIS--DVVYSIHLAK-----PE---VRRFIEKFSWEHGFVVT 170 (207)
T ss_dssp -CCSSSSTTTTHHHHHHHHHHC--SEEEEEEECC-----HH---HHHHHHHHHHHTTEEEE
T ss_pred -CCccccCCchHHHHHHHHHhc--CcEEEEEeCC-----cC---CHHHHHHHHHHCCCeEE
Confidence 344443 2356899999999 6666554222 11 12334455566666554
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-07 Score=100.54 Aligned_cols=104 Identities=19% Similarity=0.041 Sum_probs=70.4
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCC-CCCCCCceEEEecccccc-
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCRID- 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~L-pfpd~sFDlV~~s~~~l~- 291 (615)
+.+|||+|||+|.++..++.. .|+++|+++..+..+. +.+...++...+.++|+..+ +...+.||+|++.--.+.
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~-~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLD-QAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred CCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHH-HHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 578999999999999998854 4667766666554444 23333466666778886543 221344999997532111
Q ss_pred -------cccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 292 -------WLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 292 -------~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
...+...++.++.++|+|||+|++++-..
T Consensus 294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 12234578999999999999999776443
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-07 Score=93.93 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=67.6
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCC-C-C-----CCCCce
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-Y-----PSRSFE 281 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~L-p-f-----pd~sFD 281 (615)
.++|||||||+|..+..++.. +++++|+++..+..+. +...+.|. .+.+..+|+... + + ++++||
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGL-PFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 468999999999999888743 5666666554443333 22233355 377888886432 2 2 257899
Q ss_pred EEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 282 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 282 lV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+|++.. ...+...++.++.++|||||++++..
T Consensus 150 ~I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 150 FGFVDA----DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECC----chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 999653 23456779999999999999999865
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-07 Score=100.09 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc-----CCCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er-----g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
...+|||||||+|.++..++++. ..+.+...|+ +.+++.|++. ..++.+..+|....|.+ .+|++++.+ +
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~-v 253 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILAR-V 253 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEES-S
T ss_pred cCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeee-e
Confidence 34689999999999999998752 1122222343 3455666543 23588899997665554 479999998 5
Q ss_pred cccccch--HHHHHHHHhccCCCeEEEEEcC
Q 007165 290 IDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+|..+|. ..+|+++++.|+|||++++.+.
T Consensus 254 lh~~~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 254 LHDWADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp GGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 7776666 4689999999999999999874
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-07 Score=102.72 Aligned_cols=105 Identities=20% Similarity=0.169 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCC-CCCCceEEEe--
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHC-- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpf-pd~sFDlV~~-- 285 (615)
++.+|||+|||+|..+..|+.. .|+++|+++..+..+. +.+...|+ ++.+...|+..++. .+++||+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~-~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLH-ANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHH-HHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECC
Confidence 3578999999999999888752 4667766665554333 22233355 57788888877653 4578999997
Q ss_pred --ccc-ccccccc----------------hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 --SRC-RIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 --s~~-~l~~~~d----------------~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.. .+...++ ...+|.++.++|||||+|++++-..
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 211 1221111 2358999999999999999987544
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-07 Score=96.73 Aligned_cols=104 Identities=19% Similarity=0.193 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----C--CCcEEE
Q 007165 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----G--IPSTLG 266 (615)
Q Consensus 195 y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g--~~~~~~ 266 (615)
..+.+.+.+.. .+..+|||||||+|.++..|++. +|+++|+++ .+++.++++ + .++.+.
T Consensus 16 i~~~i~~~~~~--------~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~~~~v~~~ 82 (285)
T 1zq9_A 16 IINSIIDKAAL--------RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDP-----RLVAELHKRVQGTPVASKLQVL 82 (285)
T ss_dssp HHHHHHHHTCC--------CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCH-----HHHHHHHHHHTTSTTGGGEEEE
T ss_pred HHHHHHHhcCC--------CCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCH-----HHHHHHHHHHHhcCCCCceEEE
Confidence 44555555542 23468999999999999999864 556665554 444554443 2 257888
Q ss_pred EecCCCCCCCCCCceEEEecccccccccchH-HHH--------------HHH--HhccCCCeEEE
Q 007165 267 VLGTKRLPYPSRSFELAHCSRCRIDWLQRDG-ILL--------------LEL--DRLLRPGGYFV 314 (615)
Q Consensus 267 v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~-~~L--------------~ei--~RvLkPGG~Lv 314 (615)
.+|+..++++ +||+|+++. .+++..+.- .++ +|+ +++|+|||.++
T Consensus 83 ~~D~~~~~~~--~fD~vv~nl-py~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 83 VGDVLKTDLP--FFDTCVANL-PYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp ESCTTTSCCC--CCSEEEEEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred Ecceecccch--hhcEEEEec-CcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 9998887765 799999864 455543332 222 333 37999999874
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-07 Score=94.39 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=72.6
Q ss_pred CCCCeEEEECCCCchHHHHHh-cCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLL-SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~-~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
..+.+|||||||+|.++..+. ...++++|+++.++.-+. +.+...+.+..+.+.|....+.+ ++||+|++.- ++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar-~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk-~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVIT-PFAREKDWDFTFALQDVLCAPPA-EAGDLALIFK-LLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHH-HHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEES-CHHH
T ss_pred CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHH-HHHHhcCCCceEEEeecccCCCC-CCcchHHHHH-HHHH
Confidence 346799999999999999877 336777766665554433 22334478888999998877766 5999999776 6888
Q ss_pred ccchH-HHHHHHHhccCCCeEEEE
Q 007165 293 LQRDG-ILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 293 ~~d~~-~~L~ei~RvLkPGG~Lvi 315 (615)
+++.+ ..+.++.+.|+++|.++-
T Consensus 181 LE~q~~~~~~~ll~aL~~~~vvVs 204 (253)
T 3frh_A 181 LEREQAGSAMALLQSLNTPRMAVS 204 (253)
T ss_dssp HHHHSTTHHHHHHHHCBCSEEEEE
T ss_pred hhhhchhhHHHHHHHhcCCCEEEE
Confidence 86653 244488889999977764
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.5e-07 Score=94.02 Aligned_cols=154 Identities=12% Similarity=0.117 Sum_probs=97.7
Q ss_pred hcCCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhH
Q 007165 174 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHE 250 (615)
Q Consensus 174 ~~g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~ 250 (615)
++|-.|.|.-....|..+...-...+.+++. ++.+|||+|||+|.++..++.. .|+++|+++..+..
T Consensus 94 E~G~~~~~D~~k~~f~~~~~~er~ri~~~~~----------~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~ 163 (278)
T 3k6r_A 94 ENGIKYKLDVAKIMFSPANVKERVRMAKVAK----------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF 163 (278)
T ss_dssp ETTEEEEEETTTSCCCGGGHHHHHHHHHHCC----------TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHH
T ss_pred ECCEEEEEeccceEEcCCcHHHHHHHHHhcC----------CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHH
Confidence 4555666655566677666555555555543 3578999999999998887643 57788777765543
Q ss_pred HHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHH
Q 007165 251 NQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328 (615)
Q Consensus 251 a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~ 328 (615)
+. +.++..++. +.+..+|+..++ +.+.||.|++.. .+....++..+.++|||||.+.+..... ......
T Consensus 164 ~~-~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~-----p~~~~~~l~~a~~~lk~gG~ih~~~~~~--e~~~~~ 234 (278)
T 3k6r_A 164 LV-ENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGY-----VVRTHEFIPKALSIAKDGAIIHYHNTVP--EKLMPR 234 (278)
T ss_dssp HH-HHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECC-----CSSGGGGHHHHHHHEEEEEEEEEEEEEE--GGGTTT
T ss_pred HH-HHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECC-----CCcHHHHHHHHHHHcCCCCEEEEEeeec--ccccch
Confidence 33 334444553 677888887776 357899998653 2233457888899999999987643110 000001
Q ss_pred HHHHHHHHHHhhcceEEE
Q 007165 329 RIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 329 ~~w~~l~~La~~l~W~l~ 346 (615)
...+.++.+++..++.+.
T Consensus 235 ~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 235 EPFETFKRITKEYGYDVE 252 (278)
T ss_dssp TTHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHHcCCcEE
Confidence 123455666777777654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.47 E-value=9.2e-08 Score=102.41 Aligned_cols=105 Identities=16% Similarity=0.080 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCC----CCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPY----PSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpf----pd~sFDlV~~ 285 (615)
+..+|||+|||+|.++..++.. .|+++|+++..+..+. +.+...++ ++.+..+|+..+.. ..++||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~-~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAK-ENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 3478999999999999999864 5777777666555444 33333455 57888888655421 2578999998
Q ss_pred cccc--------cccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 SRCR--------IDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 s~~~--------l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.--. .++..+...++.++.++|+|||.+++++.+.
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 4311 1222445678999999999999999987554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-07 Score=107.02 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=74.5
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCC-CCCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKR-LPYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~-Lpfpd~sFDlV~~s~~ 288 (615)
+.+|||+|||+|.++..++.. .|+++|+++..+..+..+ +...++ ++.+.++|+.. ++...++||+|++.--
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N-~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERN-LRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 468999999999999988753 377777776666554432 233454 47888888655 4445688999998431
Q ss_pred ----------ccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 ----------RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ----------~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+++...+...++.++.++|+|||+|+++...
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 1333445667899999999999999998855
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=8.7e-08 Score=105.21 Aligned_cols=105 Identities=21% Similarity=0.174 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC-CCCCCceEEEe---
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHC--- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp-fpd~sFDlV~~--- 285 (615)
++.+|||+|||+|..+..++.. .|+++|+++..+..+. +.+...|+.+.+..+|+..++ +.+++||+|++
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~-~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~P 179 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLL-ENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAP 179 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECC
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCC
Confidence 3578999999999999888742 4677766665554433 233334666778888876665 34588999994
Q ss_pred -ccc-ccccccc----------------hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 -SRC-RIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 -s~~-~l~~~~d----------------~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.. .+...++ ...+|.++.++|||||+|++++-..
T Consensus 180 cSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 180 CSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 221 1222222 1568999999999999999987443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.8e-07 Score=97.74 Aligned_cols=104 Identities=12% Similarity=0.050 Sum_probs=73.5
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCCCCC----CCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLPY----PSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~Lpf----pd~sFDlV~~ 285 (615)
..+|||+|||+|.++..++.. .|+++|+++..+..+. +.+...++ ++.+..+|+..+.. ...+||+|++
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~-~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~ 299 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 468999999999999999864 5677777665554444 23333466 57888888655421 1468999998
Q ss_pred ccc--------ccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 SRC--------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 s~~--------~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.-- ..+.......++.++.++|+|||.++++....
T Consensus 300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 531 12222455679999999999999999987543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4.3e-07 Score=95.37 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=67.9
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+.+|||+|||+|.++.. +.. .|+++|+++..+..+. +.+...++ ++.+..+|+..+. ++||+|++.. ..
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~-~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dp--P~ 268 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLK-KNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNL--PK 268 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECC--TT
T ss_pred CCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECChHHhc---CCCcEEEECC--cH
Confidence 46899999999999998 753 5667766665554443 23333454 5888999987765 7899999753 11
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
....++.++.++|+|||.+++.+..
T Consensus 269 ---~~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 269 ---FAHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp ---TGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ---hHHHHHHHHHHHcCCCCEEEEEEee
Confidence 1236899999999999999987643
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=9.5e-08 Score=101.98 Aligned_cols=104 Identities=16% Similarity=0.108 Sum_probs=72.6
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCCC----CCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPY----PSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lpf----pd~sFDlV~~s~~ 288 (615)
..+|||+|||+|.++..++.. .|+++|+++..+..+. +.+...++. +.+..+|+..... .+++||+|++.--
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~-~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP 288 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAE-ENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 288 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHH-HHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCC
Confidence 468999999999999998854 6777777666554444 223333543 7888888755421 2578999997431
Q ss_pred c--------cccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 289 R--------IDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 289 ~--------l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
. .....+...++.++.++|+|||.+++++...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 289 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1 1122345678999999999999999988554
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.9e-07 Score=92.72 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
.+.+|||||||+|-++..+... .++++|+++.++.-.. +++...|++..+.+.|...-+ +.++||+|++.- ++
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~-~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lk-ti 208 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVD-EALTRLNVPHRTNVADLLEDR-LDEPADVTLLLK-TL 208 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHH-HHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETT-CH
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH-HHHHhcCCCceEEEeeecccC-CCCCcchHHHHH-HH
Confidence 3578999999999999888643 5667766555544333 223334788888888866555 458899999777 69
Q ss_pred ccccchHH-HHHHHHhccCCCeEEEEEc
Q 007165 291 DWLQRDGI-LLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 291 ~~~~d~~~-~L~ei~RvLkPGG~Lvis~ 317 (615)
|++++.++ .+.++.+.|+|||.++-..
T Consensus 209 ~~Le~q~kg~g~~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 209 PCLETQQRGSGWEVIDIVNSPNIVVTFP 236 (281)
T ss_dssp HHHHHHSTTHHHHHHHHSSCSEEEEEEE
T ss_pred HHhhhhhhHHHHHHHHHhCCCCEEEecc
Confidence 99876632 3339999999999988543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-06 Score=89.78 Aligned_cols=87 Identities=16% Similarity=0.255 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcC-CCcEEEEecCC
Q 007165 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTK 271 (615)
Q Consensus 195 y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg-~~~~~~v~d~~ 271 (615)
..+.+.+.+.+ .+..+|||||||+|.++..|++. .|+++|+++..+..+.... ...+ .++.+..+|+.
T Consensus 30 i~~~i~~~~~~--------~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~-~~~~~~~v~~~~~D~~ 100 (299)
T 2h1r_A 30 ILDKIIYAAKI--------KSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRC-LYEGYNNLEVYEGDAI 100 (299)
T ss_dssp HHHHHHHHHCC--------CTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHH-HHTTCCCEEC----CC
T ss_pred HHHHHHHhcCC--------CCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHH-HHcCCCceEEEECchh
Confidence 44455555542 23468999999999999999865 5666766655544333222 2223 35788888988
Q ss_pred CCCCCCCCceEEEecccccccc
Q 007165 272 RLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 272 ~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
.++++ +||+|+++. ..++.
T Consensus 101 ~~~~~--~~D~Vv~n~-py~~~ 119 (299)
T 2h1r_A 101 KTVFP--KFDVCTANI-PYKIS 119 (299)
T ss_dssp SSCCC--CCSEEEEEC-CGGGH
T ss_pred hCCcc--cCCEEEEcC-Ccccc
Confidence 87764 799999765 35543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=4e-06 Score=91.06 Aligned_cols=95 Identities=16% Similarity=0.227 Sum_probs=66.2
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
..+|||+|||+|.++..|+.. .|+++|+++..+..+. +.+...++++.+..+|+..+.. .+||+|++..- ..
T Consensus 291 ~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~-~n~~~ngl~v~~~~~d~~~~~~--~~fD~Vv~dPP---r~ 364 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMAR-RNVEINNVDAEFEVASDREVSV--KGFDTVIVDPP---RA 364 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHHTCCEEEEECCTTTCCC--TTCSEEEECCC---TT
T ss_pred CCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHHcCCcEEEEECChHHcCc--cCCCEEEEcCC---cc
Confidence 468999999999999999865 5777777666655444 2333345568899999887653 28999997531 11
Q ss_pred cchHHHHHHHHhccCCCeEEEEEc
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.-...++..+. .|+|||.++++.
T Consensus 365 g~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 365 GLHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp CSCHHHHHHHH-HHCCSEEEEEES
T ss_pred chHHHHHHHHH-hcCCCcEEEEEC
Confidence 11233555554 599999999986
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=8e-07 Score=91.88 Aligned_cols=107 Identities=14% Similarity=0.078 Sum_probs=70.2
Q ss_pred CCCeEEEECCC------Cch-HHHHHhc--CCCccccCChhchhHHHHHHHHHcCCCcEE-EEecCCCCCCCCCCceEEE
Q 007165 215 NIRNVLDVGCG------VAS-FGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTL-GVLGTKRLPYPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCG------tG~-~a~~L~~--~~V~gvdis~~Dls~a~i~~A~erg~~~~~-~v~d~~~Lpfpd~sFDlV~ 284 (615)
++.+|||+||| +|+ .++.+.. ..|+++|+++. + .++.+ .++|+..++++ ++||+|+
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v------------~~v~~~i~gD~~~~~~~-~~fD~Vv 128 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V------------SDADSTLIGDCATVHTA-NKWDLII 128 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B------------CSSSEEEESCGGGCCCS-SCEEEEE
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C------------CCCEEEEECccccCCcc-CcccEEE
Confidence 45789999994 465 2222222 36888888775 1 24677 89999888765 7899999
Q ss_pred ecccccccc-----------cchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceE
Q 007165 285 CSRCRIDWL-----------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (615)
Q Consensus 285 ~s~~~l~~~-----------~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~ 344 (615)
+.. ..++. .....++.++.|+|||||.|++...... . ...+..+++...|.
T Consensus 129 sn~-~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-~-------~~~l~~~l~~~GF~ 190 (290)
T 2xyq_A 129 SDM-YDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-W-------NADLYKLMGHFSWW 190 (290)
T ss_dssp ECC-CCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-C-------CHHHHHHHTTEEEE
T ss_pred EcC-CccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-C-------HHHHHHHHHHcCCc
Confidence 753 22221 1124789999999999999999774431 1 12445556665454
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.9e-07 Score=97.88 Aligned_cols=126 Identities=14% Similarity=0.078 Sum_probs=78.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC-CCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp-fpd~sFDlV~~s~ 287 (615)
++.+|||+|||+|..+..++.. .|+++|+++..+.... +.+...|+ ++.+...|+..++ +.+++||+|++.-
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~-~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~Da 183 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILS-ENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDA 183 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHH-HHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECC
Confidence 3578999999999988888742 5777777665554443 23333455 4677777776654 2357899999621
Q ss_pred ----c-ccccccc----------------hHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 288 ----C-RIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 288 ----~-~l~~~~d----------------~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
. .+...++ ...+|.++.++|||||+|++++-... .+|.. ..+..++++..+++.
T Consensus 184 PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~--~eEne---~vv~~~l~~~~~~l~ 258 (456)
T 3m4x_A 184 PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA--PEENE---EIISWLVENYPVTIE 258 (456)
T ss_dssp CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC--GGGTH---HHHHHHHHHSSEEEE
T ss_pred CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc--cccCH---HHHHHHHHhCCCEEE
Confidence 1 1111111 12689999999999999999874432 12222 234455555555443
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.8e-06 Score=90.69 Aligned_cols=128 Identities=15% Similarity=0.220 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCCCcEEEEe
Q 007165 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVL 268 (615)
Q Consensus 194 ~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~ 268 (615)
...+.+.+++.. ....+|||+|||+|.++..+++ ..++|+|+++..+. .| ..+.+..+
T Consensus 26 ~l~~~~~~~~~~--------~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~-----~a----~~~~~~~~ 88 (421)
T 2ih2_A 26 EVVDFMVSLAEA--------PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD-----LP----PWAEGILA 88 (421)
T ss_dssp HHHHHHHHHCCC--------CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC-----CC----TTEEEEES
T ss_pred HHHHHHHHhhcc--------CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHH-----hC----CCCcEEeC
Confidence 345555555542 2235899999999999998875 25677777665543 22 35778888
Q ss_pred cCCCCCCCCCCceEEEeccc--cccc-------ccch-------------------HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 269 GTKRLPYPSRSFELAHCSRC--RIDW-------LQRD-------------------GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 269 d~~~Lpfpd~sFDlV~~s~~--~l~~-------~~d~-------------------~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
|....+ +.++||+|+++-- ..+. +.+. ..++..+.++|+|||++++..|..
T Consensus 89 D~~~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 89 DFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp CGGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ChhhcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 877665 3478999998521 0111 1111 256889999999999999999876
Q ss_pred CCCChhHHHHHHHHHHHHhhcce
Q 007165 321 YAHDPENRRIWNAMYDLLKSMCW 343 (615)
Q Consensus 321 ~~~~~e~~~~w~~l~~La~~l~W 343 (615)
+..... ...+++.+...++
T Consensus 168 ~l~~~~----~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 168 WLVLED----FALLREFLAREGK 186 (421)
T ss_dssp GGTCGG----GHHHHHHHHHHSE
T ss_pred HhcCcc----HHHHHHHHHhcCC
Confidence 433322 2344455444444
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.3e-06 Score=91.44 Aligned_cols=103 Identities=18% Similarity=0.257 Sum_probs=65.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC-------------------CCccccCChhchhHHHHHHHHH------------cCCCc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-------------------DIIAMSLAPNDVHENQIQFALE------------RGIPS 263 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-------------------~V~gvdis~~Dls~a~i~~A~e------------rg~~~ 263 (615)
...+|+|+|||+|..+..+.+. +|..-|+...|...-....... .+.+.
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 3578999999999888776321 2333455555543322211110 00011
Q ss_pred EEE--Eec-CCCCCCCCCCceEEEeccccccccc--------------------------------------chHHHHHH
Q 007165 264 TLG--VLG-TKRLPYPSRSFELAHCSRCRIDWLQ--------------------------------------RDGILLLE 302 (615)
Q Consensus 264 ~~~--v~d-~~~Lpfpd~sFDlV~~s~~~l~~~~--------------------------------------d~~~~L~e 302 (615)
.|. +.. ...-.||+++||+|+++. ++||+. |...+|+.
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~-aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAF-SLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEES-CTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecc-eeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 222 222 233458899999999888 699986 23346888
Q ss_pred HHhccCCCeEEEEEcC
Q 007165 303 LDRLLRPGGYFVYSSP 318 (615)
Q Consensus 303 i~RvLkPGG~Lvis~P 318 (615)
..+.|+|||.++++..
T Consensus 211 ra~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHHEEEEEEEEEEEE
T ss_pred HHHHhCCCCEEEEEEe
Confidence 9999999999999874
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.16 E-value=4.3e-06 Score=91.00 Aligned_cols=116 Identities=15% Similarity=0.121 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhc-----------------CCCccccCChhchhHHHHHHH
Q 007165 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------------HDIIAMSLAPNDVHENQIQFA 256 (615)
Q Consensus 194 ~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~-----------------~~V~gvdis~~Dls~a~i~~A 256 (615)
...+.+.+++.. ....+|||.|||+|.++..+.+ ..+.|+|+++..+..+.....
T Consensus 158 ~v~~~mv~~l~~--------~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 158 PLIQAMVDCINP--------QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--------CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 345556666642 2346799999999998877653 245666655544333332221
Q ss_pred HHcCC---CcEEEEecCCCCCCCCCCceEEEecccccccccc-----------------hHHHHHHHHhccCCCeEEEEE
Q 007165 257 LERGI---PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR-----------------DGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 257 ~erg~---~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d-----------------~~~~L~ei~RvLkPGG~Lvis 316 (615)
..|+ ...+..+|+...+.. .+||+|+++-- +..... ...++..+.++|+|||++++.
T Consensus 230 -l~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPP-f~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V 306 (445)
T 2okc_A 230 -LHGIGTDRSPIVCEDSLEKEPS-TLVDVILANPP-FGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV 306 (445)
T ss_dssp -HTTCCSSCCSEEECCTTTSCCS-SCEEEEEECCC-SSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -HhCCCcCCCCEeeCCCCCCccc-CCcCEEEECCC-CCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEE
Confidence 2355 577888887776644 48999998642 222111 136899999999999999998
Q ss_pred cCCC
Q 007165 317 SPEA 320 (615)
Q Consensus 317 ~P~~ 320 (615)
.|..
T Consensus 307 ~p~~ 310 (445)
T 2okc_A 307 LPDN 310 (445)
T ss_dssp EEHH
T ss_pred ECCc
Confidence 8764
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=8e-06 Score=88.61 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=65.7
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCC----CCCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR----LPYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~----Lpfpd~sFDlV~~s~~ 288 (615)
..+|||+|||+|.++..|+.. .|+++|+++..+..+. +.+...++ ++.+..+|+.. +++++++||+|++.--
T Consensus 287 ~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~-~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPP 365 (433)
T 1uwv_A 287 EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQ-QNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA 365 (433)
T ss_dssp TCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCC
T ss_pred CCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCC
Confidence 468999999999999999865 5677766666554444 23333454 58899999766 4466788999996431
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
... ...++..+.+ ++|++.++++.
T Consensus 366 ---r~g-~~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 366 ---RAG-AAGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp ---TTC-CHHHHHHHHH-HCCSEEEEEES
T ss_pred ---Ccc-HHHHHHHHHh-cCCCeEEEEEC
Confidence 111 1235555543 78999998875
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.8e-08 Score=100.72 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=64.3
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCC-CCceEEEeccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS-RSFELAHCSRCRIDW 292 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd-~sFDlV~~s~~~l~~ 292 (615)
..+|||||||+|.++..|++. +|+++|+++..+..+..... ...++.+..+|+..+++++ ++| .|+++. -.+.
T Consensus 30 ~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~-Py~~ 105 (245)
T 1yub_A 30 TDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNKQRY-KIVGNI-PYHL 105 (245)
T ss_dssp SEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCSSEE-EEEEEC-CSSS
T ss_pred CCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcccCCCc-EEEEeC-Cccc
Confidence 468999999999999988754 57777777665533321111 1235788889999888874 688 565542 1111
Q ss_pred -----------ccchHHHH----HHHHhccCCCeEEEEEcC
Q 007165 293 -----------LQRDGILL----LELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 293 -----------~~d~~~~L----~ei~RvLkPGG~Lvis~P 318 (615)
......++ ..+.|+|+|||.+.+..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 106 STQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp CHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred cHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 11222234 668999999998877553
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-05 Score=82.62 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=64.9
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
..+|||||||+|.|+.+++.. .+.++++. .|+....+.. ...+.++.....+++...++.+.||+|+|.. +.+
T Consensus 75 ~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVG-vDl~~~pi~~-~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~-apn 151 (277)
T 3evf_A 75 EGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLG-RDGHEKPMNV-QSLGWNIITFKDKTDIHRLEPVKCDTLLCDI-GES 151 (277)
T ss_dssp CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC-CTTCCCCCCC-CBTTGGGEEEECSCCTTTSCCCCCSEEEECC-CCC
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCcceeEEEe-ccCccccccc-CcCCCCeEEEeccceehhcCCCCccEEEecC-ccC
Confidence 457999999999999987754 33445444 2221110000 0112344555555555667788999999865 344
Q ss_pred ----cccchH--HHHHHHHhccCCC-eEEEEEcCCCC
Q 007165 292 ----WLQRDG--ILLLELDRLLRPG-GYFVYSSPEAY 321 (615)
Q Consensus 292 ----~~~d~~--~~L~ei~RvLkPG-G~Lvis~P~~~ 321 (615)
+.+... .+|..+.++|+|| |.|++-...+|
T Consensus 152 sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~py 188 (277)
T 3evf_A 152 SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPY 188 (277)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTT
T ss_pred cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCC
Confidence 443332 3578889999999 99999775543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.02 E-value=7.5e-06 Score=81.93 Aligned_cols=66 Identities=12% Similarity=0.225 Sum_probs=46.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcC---CCcEEEEecCCCCCCCC-CCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPS-RSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~d~~~Lpfpd-~sFDlV~~s 286 (615)
+..+|||||||+|.++..|+++ .|+++ |+++.+++.++++. .++.+..+|+..+++++ ..|+ |+++
T Consensus 30 ~~~~VLDiG~G~G~lt~~l~~~~~~v~~v-----D~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~~-vv~n 101 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLELVQRCNFVTAI-----EIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYK-IFGN 101 (244)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEE-----CSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCE-EEEE
T ss_pred CCCEEEEEeCCchHHHHHHHHcCCeEEEE-----ECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCeE-EEEe
Confidence 3478999999999999999864 45555 55555556665542 36889999999988874 4563 4433
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=9.2e-06 Score=84.09 Aligned_cols=84 Identities=7% Similarity=-0.008 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCC
Q 007165 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK 271 (615)
Q Consensus 194 ~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~ 271 (615)
...+.+.+.+.+ .+..+|||||||+|.++..|++. +|+++|+++..+..+..... ...++.+..+|+.
T Consensus 37 ~i~~~Iv~~l~~--------~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l 106 (295)
T 3gru_A 37 NFVNKAVESANL--------TKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDAL 106 (295)
T ss_dssp HHHHHHHHHTTC--------CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTT
T ss_pred HHHHHHHHhcCC--------CCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchh
Confidence 345555555543 23468999999999999999864 67888887776655443332 2357899999999
Q ss_pred CCCCCCCCceEEEecc
Q 007165 272 RLPYPSRSFELAHCSR 287 (615)
Q Consensus 272 ~Lpfpd~sFDlV~~s~ 287 (615)
.+++++.+||+|+++.
T Consensus 107 ~~~~~~~~fD~Iv~Nl 122 (295)
T 3gru_A 107 KVDLNKLDFNKVVANL 122 (295)
T ss_dssp TSCGGGSCCSEEEEEC
T ss_pred hCCcccCCccEEEEeC
Confidence 9998888899999664
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=8.9e-06 Score=87.17 Aligned_cols=103 Identities=20% Similarity=0.174 Sum_probs=65.4
Q ss_pred CCeEEEECCCCchHHHHHhcC---------------------CCccccCChhchhHH------HHHHH-HHcC--CCcEE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---------------------DIIAMSLAPNDVHEN------QIQFA-LERG--IPSTL 265 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---------------------~V~gvdis~~Dls~a------~i~~A-~erg--~~~~~ 265 (615)
..+|+|+||++|..+..+... +|..-|+..+|...- ..+.. .+.| .+..|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999877766532 122334444444221 11212 2223 23455
Q ss_pred EEecC---CCCCCCCCCceEEEecccccccccchHH---------------------------------------HHHHH
Q 007165 266 GVLGT---KRLPYPSRSFELAHCSRCRIDWLQRDGI---------------------------------------LLLEL 303 (615)
Q Consensus 266 ~v~d~---~~Lpfpd~sFDlV~~s~~~l~~~~d~~~---------------------------------------~L~ei 303 (615)
..+.. ..-.||+++||+|+++. ++||+.+... +|+-.
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~-aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCY-CLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEES-CTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecc-eeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 54442 34568999999999888 6999765421 25555
Q ss_pred HhccCCCeEEEEEcCC
Q 007165 304 DRLLRPGGYFVYSSPE 319 (615)
Q Consensus 304 ~RvLkPGG~Lvis~P~ 319 (615)
.+.|+|||.++++...
T Consensus 212 a~eL~pGG~mvl~~~g 227 (384)
T 2efj_A 212 SEELISRGRMLLTFIC 227 (384)
T ss_dssp HHHEEEEEEEEEEEEC
T ss_pred HHHhccCCeEEEEEec
Confidence 8999999999998754
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.1e-05 Score=83.46 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=64.0
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC--CCC--------------
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPS-------------- 277 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp--fpd-------------- 277 (615)
.+|||+|||+|.++..|+.. .|+++|+++..+..+. +.+...++ ++.+..+|+..+. +..
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~-~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 293 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQ-YNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 293 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHH-HHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence 57999999999999999864 6788887777665554 33344454 5788888875531 121
Q ss_pred CCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.+||+|++.-- . ..+..++.+.|+++|.+++.+-
T Consensus 294 ~~fD~Vv~dPP------r-~g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 294 YQCETIFVDPP------R-SGLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp CCEEEEEECCC------T-TCCCHHHHHHHTTSSEEEEEES
T ss_pred CCCCEEEECcC------c-cccHHHHHHHHhCCCEEEEEEC
Confidence 37999985421 0 1134567777889998888763
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.83 E-value=4.3e-05 Score=79.49 Aligned_cols=103 Identities=14% Similarity=0.022 Sum_probs=65.9
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCC---CCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPS---RSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd---~sFDlV~~ 285 (615)
++.+|||+|||+|..+..++. ..|+++|+++..+.... +.++..|+ ++.+..+|+..++... .+||.|++
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~-~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA-TLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEE
Confidence 346899999999999888875 25777777665554433 23333455 5788888887765432 57999996
Q ss_pred ----ccc-cccccc-----------ch-------HHHHHHHHhccCCCeEEEEEcCC
Q 007165 286 ----SRC-RIDWLQ-----------RD-------GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 286 ----s~~-~l~~~~-----------d~-------~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+.. .+...+ +. ..+|..+.++|+ ||+++.++=.
T Consensus 181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 211 121111 11 236778888887 9999987643
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.2e-05 Score=81.87 Aligned_cols=103 Identities=14% Similarity=0.077 Sum_probs=67.6
Q ss_pred CCeEEEECCCCchHHHHHhcC------------------------------------------CCccccCChhchhHHHH
Q 007165 216 IRNVLDVGCGVASFGAYLLSH------------------------------------------DIIAMSLAPNDVHENQI 253 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~------------------------------------------~V~gvdis~~Dls~a~i 253 (615)
..+|||++||+|.++..++.. .|+|+|+++..+..+.
T Consensus 196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar- 274 (385)
T 3ldu_A 196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR- 274 (385)
T ss_dssp TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH-
T ss_pred CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH-
Confidence 467999999999988776521 3556655555544443
Q ss_pred HHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccccccc---cchHHHHHHHHhccCC--CeEEEEEcCCC
Q 007165 254 QFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRP--GGYFVYSSPEA 320 (615)
Q Consensus 254 ~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~---~d~~~~L~ei~RvLkP--GG~Lvis~P~~ 320 (615)
+.+...|+ .+.+.+.|+..++.+ .+||+|+++--..... .+...+..++.++||+ ||.+++.+++.
T Consensus 275 ~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 347 (385)
T 3ldu_A 275 ENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYE 347 (385)
T ss_dssp HHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCT
T ss_pred HHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCH
Confidence 22233365 478999999888765 5899999864212122 2334567777777776 88888877643
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.83 E-value=5.7e-05 Score=81.15 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=66.2
Q ss_pred CCeEEEECCCCchHHHHHhc--C----------------------------------------CCccccCChhchhHHHH
Q 007165 216 IRNVLDVGCGVASFGAYLLS--H----------------------------------------DIIAMSLAPNDVHENQI 253 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~--~----------------------------------------~V~gvdis~~Dls~a~i 253 (615)
...|||.+||+|.++..++. . .|+|+|+++.++..+.
T Consensus 202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar- 280 (393)
T 3k0b_A 202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK- 280 (393)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH-
T ss_pred CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH-
Confidence 46799999999998766542 1 2566666555554443
Q ss_pred HHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccccccc---cchHHHHHHHHhccCC--CeEEEEEcCCC
Q 007165 254 QFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRP--GGYFVYSSPEA 320 (615)
Q Consensus 254 ~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~---~d~~~~L~ei~RvLkP--GG~Lvis~P~~ 320 (615)
+.+...|+ .+.+.++|+..++.+ .+||+|+++--....+ .+...+..++.+.||+ ||.+++.+++.
T Consensus 281 ~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 353 (393)
T 3k0b_A 281 QNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYE 353 (393)
T ss_dssp HHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred HHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 22333455 378999999888865 5899999873211112 2234456666666665 88888877643
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.80 E-value=8.9e-06 Score=86.44 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=64.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC--------------------CCccccCChhchhHHHHHHHHH-cCCCcEEEEec---C
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLG---T 270 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--------------------~V~gvdis~~Dls~a~i~~A~e-rg~~~~~~v~d---~ 270 (615)
..-+|+|+||++|..+..+.+. +|..-|+...|..........- ...+..|..+. .
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3467999999999766655432 2223355555543332111100 00022343333 3
Q ss_pred CCCCCCCCCceEEEecccccccccch---------------------------------HHHHHHHHhccCCCeEEEEEc
Q 007165 271 KRLPYPSRSFELAHCSRCRIDWLQRD---------------------------------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 271 ~~Lpfpd~sFDlV~~s~~~l~~~~d~---------------------------------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
..-.||+++||+|+++. ++||+.+. ..+|+-..+.|+|||.++++.
T Consensus 131 y~rlfp~~S~d~v~Ss~-aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSY-SLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSCCSCTTCBSCEEEES-CTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhccCCCCceEEEEehh-hhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 44568999999999888 69997542 124888899999999999987
Q ss_pred C
Q 007165 318 P 318 (615)
Q Consensus 318 P 318 (615)
.
T Consensus 210 ~ 210 (359)
T 1m6e_X 210 L 210 (359)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00012 Score=78.37 Aligned_cols=103 Identities=16% Similarity=0.103 Sum_probs=67.5
Q ss_pred CCeEEEECCCCchHHHHHhc--C----------------------------------------CCccccCChhchhHHHH
Q 007165 216 IRNVLDVGCGVASFGAYLLS--H----------------------------------------DIIAMSLAPNDVHENQI 253 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~--~----------------------------------------~V~gvdis~~Dls~a~i 253 (615)
...+||.+||+|.++...+. . .++|+|+++.++..+.
T Consensus 195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar- 273 (384)
T 3ldg_A 195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR- 273 (384)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH-
T ss_pred CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH-
Confidence 46799999999988766552 1 2556666555554443
Q ss_pred HHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccc---ccccccchHHHHHHHHhccCC--CeEEEEEcCCC
Q 007165 254 QFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC---RIDWLQRDGILLLELDRLLRP--GGYFVYSSPEA 320 (615)
Q Consensus 254 ~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~---~l~~~~d~~~~L~ei~RvLkP--GG~Lvis~P~~ 320 (615)
+.+...|+ .+.+.++|+..++.+ .+||+|+++-- .+.-..+...+..++.+.||+ ||.+++.+++.
T Consensus 274 ~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 346 (384)
T 3ldg_A 274 KNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDT 346 (384)
T ss_dssp HHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCT
T ss_pred HHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCH
Confidence 22333455 378999999888865 58999998631 011112345577777777776 99888877643
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.72 E-value=3e-05 Score=86.63 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CC--------------ccccCChhchhHHHHHHHH
Q 007165 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DI--------------IAMSLAPNDVHENQIQFAL 257 (615)
Q Consensus 195 y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V--------------~gvdis~~Dls~a~i~~A~ 257 (615)
..+.+.+++.. ....+|||.|||+|.|+..+.+. .. ....+.+.|+++.+++.|+
T Consensus 157 iv~~mv~~l~p--------~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~ 228 (541)
T 2ar0_A 157 LIKTIIHLLKP--------QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL 228 (541)
T ss_dssp HHHHHHHHHCC--------CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhcc--------CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence 44555566642 23467999999999988766532 00 0123344455555555554
Q ss_pred H----cCCC------cEEEEecCCCCC-CCCCCceEEEeccccccccc-------------c-hHHHHHHHHhccCCCeE
Q 007165 258 E----RGIP------STLGVLGTKRLP-YPSRSFELAHCSRCRIDWLQ-------------R-DGILLLELDRLLRPGGY 312 (615)
Q Consensus 258 e----rg~~------~~~~v~d~~~Lp-fpd~sFDlV~~s~~~l~~~~-------------d-~~~~L~ei~RvLkPGG~ 312 (615)
. .++. ..+..+|+...+ .+..+||+|+++-- +.... + ...++..+.+.|+|||+
T Consensus 229 ~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPP-f~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 307 (541)
T 2ar0_A 229 MNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPP-FGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGR 307 (541)
T ss_dssp HHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCC-CTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred HHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCC-cccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCE
Confidence 3 3544 577888865543 34578999998631 21111 1 13589999999999999
Q ss_pred EEEEcCCC
Q 007165 313 FVYSSPEA 320 (615)
Q Consensus 313 Lvis~P~~ 320 (615)
+++..|+.
T Consensus 308 ~a~V~p~~ 315 (541)
T 2ar0_A 308 AAVVVPDN 315 (541)
T ss_dssp EEEEEEHH
T ss_pred EEEEecCc
Confidence 99998865
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.71 E-value=4.5e-05 Score=77.19 Aligned_cols=77 Identities=10% Similarity=0.264 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEEec
Q 007165 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLG 269 (615)
Q Consensus 195 y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d 269 (615)
..+.+.+.+... +..+|||||||+|.++..|++. +|+++|+ ++.+++.++++ ..++.+..+|
T Consensus 17 i~~~iv~~~~~~--------~~~~VLEIG~G~G~lt~~La~~~~~V~avEi-----d~~~~~~~~~~~~~~~~v~~i~~D 83 (255)
T 3tqs_A 17 VLQKIVSAIHPQ--------KTDTLVEIGPGRGALTDYLLTECDNLALVEI-----DRDLVAFLQKKYNQQKNITIYQND 83 (255)
T ss_dssp HHHHHHHHHCCC--------TTCEEEEECCTTTTTHHHHTTTSSEEEEEEC-----CHHHHHHHHHHHTTCTTEEEEESC
T ss_pred HHHHHHHhcCCC--------CcCEEEEEcccccHHHHHHHHhCCEEEEEEC-----CHHHHHHHHHHHhhCCCcEEEEcc
Confidence 445555555532 3468999999999999999875 4555554 55555555543 3468899999
Q ss_pred CCCCCCCC----CCceEEEe
Q 007165 270 TKRLPYPS----RSFELAHC 285 (615)
Q Consensus 270 ~~~Lpfpd----~sFDlV~~ 285 (615)
+..+++++ +.|| |++
T Consensus 84 ~~~~~~~~~~~~~~~~-vv~ 102 (255)
T 3tqs_A 84 ALQFDFSSVKTDKPLR-VVG 102 (255)
T ss_dssp TTTCCGGGSCCSSCEE-EEE
T ss_pred hHhCCHHHhccCCCeE-EEe
Confidence 99888753 5688 443
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=5.3e-05 Score=85.98 Aligned_cols=117 Identities=13% Similarity=0.117 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHH---HHhcC-----CCccccCChhchhHHHHHHHHHcC--CC
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA---YLLSH-----DIIAMSLAPNDVHENQIQFALERG--IP 262 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~---~L~~~-----~V~gvdis~~Dls~a~i~~A~erg--~~ 262 (615)
+.|.+++.+.+.-....-....+...|||||||+|.+.. ....+ +|.+++-++.-.. ..+..++.+ -.
T Consensus 335 ~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~--a~~~v~~N~~~dk 412 (637)
T 4gqb_A 335 SQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVV--TLENWQFEEWGSQ 412 (637)
T ss_dssp HHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHH--HHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHH--HHHHHHhccCCCe
Confidence 456666665442111111122344679999999997633 22222 4677777764322 223333333 35
Q ss_pred cEEEEecCCCCCCCCCCceEEEecccccccc---cchHHHHHHHHhccCCCeEEE
Q 007165 263 STLGVLGTKRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRPGGYFV 314 (615)
Q Consensus 263 ~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~---~d~~~~L~ei~RvLkPGG~Lv 314 (615)
++++.++++++..| +++|+|++-- +.+. +.....+....|.|||||.++
T Consensus 413 VtVI~gd~eev~LP-EKVDIIVSEw--MG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 413 VTVVSSDMREWVAP-EKADIIVSEL--LGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEEEESCTTTCCCS-SCEEEEECCC--CBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEeCcceeccCC-cccCEEEEEc--CcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 88899999998877 6899999632 2221 112356777899999999876
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=7.4e-05 Score=76.36 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc--CCCcEEEEecC
Q 007165 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGT 270 (615)
Q Consensus 195 y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er--g~~~~~~v~d~ 270 (615)
..+.+.+.+.+ .+. +|||||||+|.++..|++. +|+++|+++.++. .++++ +.++.+..+|+
T Consensus 35 i~~~Iv~~~~~--------~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~-----~l~~~~~~~~v~vi~~D~ 100 (271)
T 3fut_A 35 HLRRIVEAARP--------FTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRP-----VLEETLSGLPVRLVFQDA 100 (271)
T ss_dssp HHHHHHHHHCC--------CCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHH-----HHHHHTTTSSEEEEESCG
T ss_pred HHHHHHHhcCC--------CCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHH-----HHHHhcCCCCEEEEECCh
Confidence 44555555542 234 7999999999999999865 6777776665554 44333 24688999999
Q ss_pred CCCCCCCC-CceEEEecc
Q 007165 271 KRLPYPSR-SFELAHCSR 287 (615)
Q Consensus 271 ~~Lpfpd~-sFDlV~~s~ 287 (615)
..+++++. .||.|+++.
T Consensus 101 l~~~~~~~~~~~~iv~Nl 118 (271)
T 3fut_A 101 LLYPWEEVPQGSLLVANL 118 (271)
T ss_dssp GGSCGGGSCTTEEEEEEE
T ss_pred hhCChhhccCccEEEecC
Confidence 88887653 689888553
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=4.2e-05 Score=81.74 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=65.4
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc--------------CCC-cEEEEecCCCCCC-
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER--------------GIP-STLGVLGTKRLPY- 275 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er--------------g~~-~~~~v~d~~~Lpf- 275 (615)
..+|||+|||+|.++..++.. .|+++|+++..+..+..+..... ++. +.+..+|+..+..
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 468999999999999888753 46677666655544432222221 554 7778888654321
Q ss_pred CCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 276 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 276 pd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
..+.||+|++.- . .....++..+.+.|||||.++++.
T Consensus 128 ~~~~fD~I~lDP--~---~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLDP--F---GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEECC--S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeCC--C---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 135799999432 1 123578999999999999998875
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=5e-05 Score=81.62 Aligned_cols=96 Identities=9% Similarity=0.037 Sum_probs=66.2
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCC---cEEEEecCCCCC--CCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRLP--YPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~---~~~~v~d~~~Lp--fpd~sFDlV~~ 285 (615)
+.+|||++||+|.++..++.+ .|+++|+++..+..+. +.++..++. +.+..+|+..+. ...+.||+|++
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~-~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMK-ENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHH-HHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 468999999999999988752 4677777665544333 333344553 677888864321 11367999996
Q ss_pred cccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.- . ..+..++..+.+.|+|||+++++.
T Consensus 132 DP--~---g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP--F---GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC--S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--C---cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 43 1 223568999999999999998876
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00042 Score=71.62 Aligned_cols=110 Identities=16% Similarity=0.220 Sum_probs=73.0
Q ss_pred CCCCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHc----------CCCcEEEEecCCCC-CCCCCCce
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER----------GIPSTLGVLGTKRL-PYPSRSFE 281 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~er----------g~~~~~~v~d~~~L-pfpd~sFD 281 (615)
+.+++||=||.|.|..++.+++. .+.-+ .-.++++..++.+++. ..++.+...|+... .-..++||
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v--~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yD 159 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESI--TMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFD 159 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEE--EEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceE--EEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCC
Confidence 34689999999999999999865 22222 2234555666666543 24678888886543 34567899
Q ss_pred EEEeccccccccc----chHHHHHHHHhccCCCeEEEEEcCCCCCCChh
Q 007165 282 LAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHDPE 326 (615)
Q Consensus 282 lV~~s~~~l~~~~----d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e 326 (615)
+|+.-. .-...+ ....+++.+.+.|+|||.++......+.....
T Consensus 160 vIi~D~-~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~ 207 (294)
T 3o4f_A 160 VIISDC-TDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEE 207 (294)
T ss_dssp EEEESC-CCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHH
T ss_pred EEEEeC-CCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHH
Confidence 999532 111111 11458999999999999999977555544443
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00032 Score=67.17 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=83.3
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcccccccccccccC---CCC-CCccceecccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESF---STY-PRTYDLLHAWKVFSEIE 535 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGliG~~hdwce~f---stY-prtyDl~Ha~~~fs~~~ 535 (615)
.+|+|+.+|.|.++.+|..... +|+=++- +..+...-+++.+...+.-.+.+ +.. ..+||+|.+.+++. .
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~- 128 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-H- 128 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-S-
T ss_pred CEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-h-
Confidence 7899999999999999987743 5666654 46666666665444433222222 222 34599999998877 2
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEEcCh--------------------------------hHHHHHHHHHhhcCccc
Q 007165 536 ERGCSFEDLLIEMDRMLRPEGFVIIRDKS--------------------------------SIINYIRKFITALKWDG 581 (615)
Q Consensus 536 ~~~c~~~~i~~EmdRilRp~g~~iird~~--------------------------------~~~~~~~~~~~~~~w~~ 581 (615)
-+...+|-|+-|+|+|||.++|.+.. ...+++++++..-.++.
T Consensus 129 ---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 203 (227)
T 3e8s_A 129 ---QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRL 203 (227)
T ss_dssp ---SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEE
T ss_pred ---hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeE
Confidence 35789999999999999999997531 15788999999999987
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00093 Score=64.09 Aligned_cols=150 Identities=16% Similarity=0.177 Sum_probs=93.9
Q ss_pred hhhhhhHhhHHHHHHHHHH------------hhhccccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCCCCchhH
Q 007165 431 EEFHEDIGIWQVRVVDYWK------------QMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI 498 (615)
Q Consensus 431 ~~~~~d~~~W~~~v~~y~~------------~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~~tL~~ 498 (615)
+.|..+...|......|.. ++........-.+|+|+.+|.|.++..|. ..+...-.-|. .+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~------~~ 99 (215)
T 2zfu_A 27 RLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIR-NPVHCFDLASL------DP 99 (215)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-SCEEEEESSCS------ST
T ss_pred HHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC------Cc
Confidence 4466666777766555533 12111111233579999999999999884 33333332222 11
Q ss_pred HhhcccccccccccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcChh---HHHHHHHHHh
Q 007165 499 IYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS---IINYIRKFIT 575 (615)
Q Consensus 499 iy~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~---~~~~~~~~~~ 575 (615)
-+. .| | .+.++.-+.+||+|.+..++. . -+...+|-|+-|+|+|||.++|.+-.. ..+++.+++.
T Consensus 100 ~~~---~~---d-~~~~~~~~~~fD~v~~~~~l~-~----~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~ 167 (215)
T 2zfu_A 100 RVT---VC---D-MAQVPLEDESVDVAVFCLSLM-G----TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVT 167 (215)
T ss_dssp TEE---ES---C-TTSCSCCTTCEEEEEEESCCC-S----SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHH
T ss_pred eEE---Ee---c-cccCCCCCCCEeEEEEehhcc-c----cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHH
Confidence 111 11 2 122232257899999988875 2 257899999999999999999987554 4678888888
Q ss_pred hcCccceeeccccccCcCCCCCceEEEEEec
Q 007165 576 ALKWDGWLSEVEPRIDALSSSEERVLIAKKK 606 (615)
Q Consensus 576 ~~~w~~~~~~~~~~~~~~~~~~e~~l~~~k~ 606 (615)
...++.. ..+. ....-.+++++|.
T Consensus 168 ~~Gf~~~--~~~~-----~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 168 KLGFKIV--SKDL-----TNSHFFLFDFQKT 191 (215)
T ss_dssp HTTEEEE--EEEC-----CSTTCEEEEEEEC
T ss_pred HCCCEEE--EEec-----CCCeEEEEEEEec
Confidence 8888862 2211 1224578888886
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.46 E-value=7.8e-05 Score=84.95 Aligned_cols=97 Identities=11% Similarity=0.057 Sum_probs=63.1
Q ss_pred CCeEEEECCCCchHHHH---H---hc---------C--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCC--
Q 007165 216 IRNVLDVGCGVASFGAY---L---LS---------H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-- 276 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~---L---~~---------~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfp-- 276 (615)
...|||||||+|.+... . ++ . +|.+++-++......+...+..-+-.+.++.++++++.+|
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 46799999999977532 1 12 1 6777776654332222222222234588999999888763
Q ss_pred ---CCCceEEEecccccccccch---HHHHHHHHhccCCCeEEE
Q 007165 277 ---SRSFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFV 314 (615)
Q Consensus 277 ---d~sFDlV~~s~~~l~~~~d~---~~~L~ei~RvLkPGG~Lv 314 (615)
.+.+|+|++-. +.++-+- ...|..+.|.|||||.++
T Consensus 490 ~~~~ekVDIIVSEl--mGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSEL--LGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECC--CBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEec--cccccchhccHHHHHHHHHhCCCCcEEE
Confidence 47899999643 3333222 358888899999999876
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0015 Score=69.38 Aligned_cols=84 Identities=11% Similarity=0.016 Sum_probs=59.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
++.+|||+||++|+|+..|.++ .|+++|..+.+.. . .....+.+...|+..+..+.+.||+|+|-. +.
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~--l-----~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm-~~-- 280 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQS--L-----MDTGQVTWLREDGFKFRPTRSNISWMVCDM-VE-- 280 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHH--H-----HTTTCEEEECSCTTTCCCCSSCEEEEEECC-SS--
T ss_pred CCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChh--h-----ccCCCeEEEeCccccccCCCCCcCEEEEcC-CC--
Confidence 4578999999999999999866 6888887765431 1 123467888889888877778999999755 23
Q ss_pred ccchHHHHHHHHhccCCC
Q 007165 293 LQRDGILLLELDRLLRPG 310 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPG 310 (615)
.+...+.-+.+.|..|
T Consensus 281 --~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 281 --KPAKVAALMAQWLVNG 296 (375)
T ss_dssp --CHHHHHHHHHHHHHTT
T ss_pred --ChHHhHHHHHHHHhcc
Confidence 3444444444544443
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00048 Score=69.22 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc-CCCcEEEEecCCC
Q 007165 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKR 272 (615)
Q Consensus 194 ~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er-g~~~~~~v~d~~~ 272 (615)
...+.+.+.+.. .+..+|||||||+|.++..|++.. +..+.+.|+++.+++.++++ ..++.+..+|+..
T Consensus 18 ~i~~~iv~~~~~--------~~~~~VLDiG~G~G~lt~~L~~~~--~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~ 87 (249)
T 3ftd_A 18 GVLKKIAEELNI--------EEGNTVVEVGGGTGNLTKVLLQHP--LKKLYVIELDREMVENLKSIGDERLEVINEDASK 87 (249)
T ss_dssp HHHHHHHHHTTC--------CTTCEEEEEESCHHHHHHHHTTSC--CSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTT
T ss_pred HHHHHHHHhcCC--------CCcCEEEEEcCchHHHHHHHHHcC--CCeEEEEECCHHHHHHHHhccCCCeEEEEcchhh
Confidence 345555555542 234689999999999999998751 23344446666677777665 2357889999999
Q ss_pred CCCCC
Q 007165 273 LPYPS 277 (615)
Q Consensus 273 Lpfpd 277 (615)
+++++
T Consensus 88 ~~~~~ 92 (249)
T 3ftd_A 88 FPFCS 92 (249)
T ss_dssp CCGGG
T ss_pred CChhH
Confidence 88764
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00022 Score=73.16 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--C----CccccCChhchhHHHHHHHHHc-CCCcEEEE
Q 007165 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--D----IIAMSLAPNDVHENQIQFALER-GIPSTLGV 267 (615)
Q Consensus 195 y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~----V~gvdis~~Dls~a~i~~A~er-g~~~~~~v 267 (615)
..+.+.+.+... +..+|||||||+|.++..|++. . |+++|+++. +++.++++ ..++.+..
T Consensus 30 i~~~iv~~~~~~--------~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~-----~l~~a~~~~~~~v~~i~ 96 (279)
T 3uzu_A 30 VIDAIVAAIRPE--------RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRD-----LIGRLEQRFGELLELHA 96 (279)
T ss_dssp HHHHHHHHHCCC--------TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHH-----HHHHHHHHHGGGEEEEE
T ss_pred HHHHHHHhcCCC--------CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHH-----HHHHHHHhcCCCcEEEE
Confidence 445555555532 3468999999999999999864 3 677765554 44554443 34678999
Q ss_pred ecCCCCCCCC
Q 007165 268 LGTKRLPYPS 277 (615)
Q Consensus 268 ~d~~~Lpfpd 277 (615)
+|+..+++++
T Consensus 97 ~D~~~~~~~~ 106 (279)
T 3uzu_A 97 GDALTFDFGS 106 (279)
T ss_dssp SCGGGCCGGG
T ss_pred CChhcCChhH
Confidence 9999888754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0006 Score=78.46 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=67.3
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhhc----cccc----c-cccccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIG----T-VHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~R----GliG----~-~hdwce~fstYprtyDl~Ha~~~ 530 (615)
..|+|+.||-|+|+.++..... -.|+-+|.. ..|...-+. |+-+ + -.|..+.+.....+||+|-.+--
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 3699999999999877654321 124444533 444443322 3321 1 12322222233578999988653
Q ss_pred -cccccc------CCCChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCccc
Q 007165 531 -FSEIEE------RGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDG 581 (615)
Q Consensus 531 -fs~~~~------~~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~ 581 (615)
|+.-.+ ..-...+++-+.=|+|+|||.+++.-.......-.+.+....++.
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~ 676 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKA 676 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEE
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCce
Confidence 221000 001356788899999999999999876633333344555555553
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00021 Score=71.92 Aligned_cols=98 Identities=11% Similarity=0.215 Sum_probs=67.1
Q ss_pred eeeeeeccccchhHHhhhc-CCCcEEEEeccCCC-CCchhHHhhc----ccccccccccccCCCCCCccceecccccccc
Q 007165 460 FRNVMDMNSNLGGFAAALK-DKDVWVMNVAPVRM-SARLKIIYDR----GLIGTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~-~~~vwvmnvvp~~~-~~tL~~iy~R----GliG~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
-..|+|..+|.|+++..|. ..+. +|+=++- ++.+...-++ |+-.-.+--+..+...|.+||+|.+.++|..
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~~ 141 (287)
T 1kpg_A 65 GMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEH 141 (287)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred cCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchhh
Confidence 3579999999999998887 3343 5555553 3555554443 4422111112222334589999999999886
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+.. -+...++-|+-|+|+|||.++|.+
T Consensus 142 ~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 142 FGH--ERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp TCT--TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cCh--HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 532 257899999999999999999975
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0011 Score=68.17 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=67.6
Q ss_pred CcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEE
Q 007165 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTL 265 (615)
Q Consensus 190 ~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~ 265 (615)
+++-++.+...+ .+. .++++|||+||++|.|+.++++. .|.++|+...+...... ....+.++..
T Consensus 65 Raa~KL~ei~ek--~l~-------~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~--~~~~~~~iv~ 133 (300)
T 3eld_A 65 RGAAKIRWLHER--GYL-------RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH--MQTLGWNIVK 133 (300)
T ss_dssp TTHHHHHHHHHH--TSC-------CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--CCBTTGGGEE
T ss_pred hHHHHHHHHHHh--CCC-------CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc--ccccCCceEE
Confidence 445555554444 332 24578999999999999999974 34455554321100000 0000112222
Q ss_pred EEecCCCCCCCCCCceEEEecccccc----cccch--HHHHHHHHhccCCC-eEEEEEcCCCC
Q 007165 266 GVLGTKRLPYPSRSFELAHCSRCRID----WLQRD--GILLLELDRLLRPG-GYFVYSSPEAY 321 (615)
Q Consensus 266 ~v~d~~~Lpfpd~sFDlV~~s~~~l~----~~~d~--~~~L~ei~RvLkPG-G~Lvis~P~~~ 321 (615)
...+.....+....+|+|+|-. +.+ ..+.. ..+|.-+.++|+|| |.|++-...+|
T Consensus 134 ~~~~~di~~l~~~~~DlVlsD~-APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~y 195 (300)
T 3eld_A 134 FKDKSNVFTMPTEPSDTLLCDI-GESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPY 195 (300)
T ss_dssp EECSCCTTTSCCCCCSEEEECC-CCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTT
T ss_pred eecCceeeecCCCCcCEEeecC-cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccc
Confidence 2222333345567899999854 344 11111 13566668999999 99999875443
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0001 Score=74.68 Aligned_cols=72 Identities=17% Similarity=0.101 Sum_probs=47.8
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchh--HHHHHHHHHc----CC--CcEEEEecCCCC-C-CCC--CCce
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVH--ENQIQFALER----GI--PSTLGVLGTKRL-P-YPS--RSFE 281 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls--~a~i~~A~er----g~--~~~~~v~d~~~L-p-fpd--~sFD 281 (615)
..+|||+|||+|.++..|+.. .|+++|+++.... ..+++.|+++ ++ .+.+..+|+..+ + +++ ++||
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~fD 163 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPD 163 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCCS
T ss_pred cCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCcc
Confidence 367999999999999998864 6777777661100 0333444322 22 378888887653 3 444 7899
Q ss_pred EEEecc
Q 007165 282 LAHCSR 287 (615)
Q Consensus 282 lV~~s~ 287 (615)
+|++.-
T Consensus 164 ~V~~dP 169 (258)
T 2r6z_A 164 IVYLDP 169 (258)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999865
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00026 Score=72.38 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=59.8
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
..+|||||||+|.|+.+.+.. .|.++|+.......+. .. ...+.++.....+.....++.+.+|+|+|-. +.+
T Consensus 91 ~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi-~~-~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDm-Apn 167 (282)
T 3gcz_A 91 TGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPI-MR-TTLGWNLIRFKDKTDVFNMEVIPGDTLLCDI-GES 167 (282)
T ss_dssp CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCC-CC-CBTTGGGEEEECSCCGGGSCCCCCSEEEECC-CCC
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccc-cc-ccCCCceEEeeCCcchhhcCCCCcCEEEecC-ccC
Confidence 458999999999999988753 3445555432110000 00 0012233333333333345678999999865 444
Q ss_pred ----cccchH--HHHHHHHhccCCC--eEEEEEcCCC
Q 007165 292 ----WLQRDG--ILLLELDRLLRPG--GYFVYSSPEA 320 (615)
Q Consensus 292 ----~~~d~~--~~L~ei~RvLkPG--G~Lvis~P~~ 320 (615)
+.+... .+|.-+.++|+|| |.|++-....
T Consensus 168 sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p 204 (282)
T 3gcz_A 168 SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP 204 (282)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence 222222 2566678999999 9999977543
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00046 Score=77.13 Aligned_cols=118 Identities=15% Similarity=0.097 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--------C------CccccCChhchhHHHHHHHHH-
Q 007165 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--------D------IIAMSLAPNDVHENQIQFALE- 258 (615)
Q Consensus 194 ~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--------~------V~gvdis~~Dls~a~i~~A~e- 258 (615)
...+.+.+++.. . ..+|||.+||+|.|...+... . .....+.+.|+++.+.+.|+.
T Consensus 232 ~Vv~lmv~ll~p--------~-~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~N 302 (544)
T 3khk_A 232 SIVTLIVEMLEP--------Y-KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMN 302 (544)
T ss_dssp HHHHHHHHHHCC--------C-SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--------C-CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHH
Confidence 345556666642 1 238999999999887665321 0 001233344444444454443
Q ss_pred ---cCCCcEE--EEecCCCCC-CCCCCceEEEeccccc--cc----------------------ccc---h-HHHHHHHH
Q 007165 259 ---RGIPSTL--GVLGTKRLP-YPSRSFELAHCSRCRI--DW----------------------LQR---D-GILLLELD 304 (615)
Q Consensus 259 ---rg~~~~~--~v~d~~~Lp-fpd~sFDlV~~s~~~l--~~----------------------~~d---~-~~~L~ei~ 304 (615)
.|+...+ ..+|+...+ +++.+||+|+++--.. .| .+. . -.++..+.
T Consensus 303 l~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l 382 (544)
T 3khk_A 303 MVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHML 382 (544)
T ss_dssp HHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHH
T ss_pred HHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHH
Confidence 3554444 566754444 4568999999853111 11 110 1 15889999
Q ss_pred hccCCCeEEEEEcCCC
Q 007165 305 RLLRPGGYFVYSSPEA 320 (615)
Q Consensus 305 RvLkPGG~Lvis~P~~ 320 (615)
+.|+|||++++..|+.
T Consensus 383 ~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 383 YHLAPTGSMALLLANG 398 (544)
T ss_dssp HTEEEEEEEEEEEETH
T ss_pred HHhccCceEEEEecch
Confidence 9999999999998874
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00035 Score=68.52 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=80.1
Q ss_pred cCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcc----cccc-cccccccCCCCCCccceecccc
Q 007165 456 QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----LIGT-VHDWCESFSTYPRTYDLLHAWK 529 (615)
Q Consensus 456 ~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RG----liG~-~hdwce~fstYprtyDl~Ha~~ 529 (615)
....-..|+|..+|.|.++..|...- .-+|+-++- +..+...-++- -+-. ..|.. .++.-+.+||+|.+.+
T Consensus 90 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~ 166 (254)
T 1xtp_A 90 PGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASME-TATLPPNTYDLIVIQW 166 (254)
T ss_dssp TTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGG-GCCCCSSCEEEEEEES
T ss_pred cccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHH-HCCCCCCCeEEEEEcc
Confidence 33455689999999999999886542 113444442 34455444431 1222 22333 2333347999999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEEcCh----------------hHHHHHHHHHhhcCccc
Q 007165 530 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS----------------SIINYIRKFITALKWDG 581 (615)
Q Consensus 530 ~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~----------------~~~~~~~~~~~~~~w~~ 581 (615)
++..+... +...+|-|+-|+|+|||.++|.+.. ...+++++++..-.++.
T Consensus 167 ~l~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 232 (254)
T 1xtp_A 167 TAIYLTDA--DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRV 232 (254)
T ss_dssp CGGGSCHH--HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCE
T ss_pred hhhhCCHH--HHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEE
Confidence 88855321 3788999999999999999998731 13477888888888876
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00034 Score=70.52 Aligned_cols=78 Identities=6% Similarity=0.038 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC-C--CccccCChhchhHHHHHHHHHcC---CCcEEEEe
Q 007165 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-D--IIAMSLAPNDVHENQIQFALERG---IPSTLGVL 268 (615)
Q Consensus 195 y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~-~--V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~ 268 (615)
..+.+.+.+... +..+|||||||+|.++. +... . |+++ |+++.+++.++++. .++.+..+
T Consensus 9 i~~~iv~~~~~~--------~~~~VLEIG~G~G~lt~-l~~~~~~~v~av-----Eid~~~~~~a~~~~~~~~~v~~i~~ 74 (252)
T 1qyr_A 9 VIDSIVSAINPQ--------KGQAMVEIGPGLAALTE-PVGERLDQLTVI-----ELDRDLAARLQTHPFLGPKLTIYQQ 74 (252)
T ss_dssp HHHHHHHHHCCC--------TTCCEEEECCTTTTTHH-HHHTTCSCEEEE-----CCCHHHHHHHHTCTTTGGGEEEECS
T ss_pred HHHHHHHhcCCC--------CcCEEEEECCCCcHHHH-hhhCCCCeEEEE-----ECCHHHHHHHHHHhccCCceEEEEC
Confidence 444555555432 34679999999999999 7542 3 5555 55566666766653 25788999
Q ss_pred cCCCCCCCCC-----CceEEEec
Q 007165 269 GTKRLPYPSR-----SFELAHCS 286 (615)
Q Consensus 269 d~~~Lpfpd~-----sFDlV~~s 286 (615)
|+..+++++. ..|.|+++
T Consensus 75 D~~~~~~~~~~~~~~~~~~vvsN 97 (252)
T 1qyr_A 75 DAMTFNFGELAEKMGQPLRVFGN 97 (252)
T ss_dssp CGGGCCHHHHHHHHTSCEEEEEE
T ss_pred chhhCCHHHhhcccCCceEEEEC
Confidence 9988876532 34566643
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0012 Score=73.77 Aligned_cols=123 Identities=13% Similarity=0.098 Sum_probs=74.7
Q ss_pred HHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHH----cCC---CcEE
Q 007165 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE----RGI---PSTL 265 (615)
Q Consensus 195 y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~e----rg~---~~~~ 265 (615)
..+.+.+++..... .....+|||.+||+|.|...+... +.....+.+.|+++.+.+.|+. .|+ +..+
T Consensus 205 Vv~lmv~ll~~~~~----~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I 280 (542)
T 3lkd_A 205 VAKLMTQIAFLGRE----DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFL 280 (542)
T ss_dssp HHHHHHHHHHTTCT----TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHhcccC----CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccce
Confidence 45556666652210 124578999999999887666532 0012233444444444455443 355 3567
Q ss_pred EEecCCCC--C-CCCCCceEEEecccc-ccc-----------------cc---ch-HHHHHHHHhccC-CCeEEEEEcCC
Q 007165 266 GVLGTKRL--P-YPSRSFELAHCSRCR-IDW-----------------LQ---RD-GILLLELDRLLR-PGGYFVYSSPE 319 (615)
Q Consensus 266 ~v~d~~~L--p-fpd~sFDlV~~s~~~-l~~-----------------~~---d~-~~~L~ei~RvLk-PGG~Lvis~P~ 319 (615)
..+|+... | ++...||+|+++--. ..| .+ +. -.++..+.+.|+ |||++++..|.
T Consensus 281 ~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp EESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred EecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 88887655 4 456889999985210 111 00 01 237899999999 99999999987
Q ss_pred CC
Q 007165 320 AY 321 (615)
Q Consensus 320 ~~ 321 (615)
.+
T Consensus 361 g~ 362 (542)
T 3lkd_A 361 GV 362 (542)
T ss_dssp HH
T ss_pred hH
Confidence 53
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.003 Score=61.12 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=64.1
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc-ccccccccccCCCCCCccceecccc-ccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-IGTVHDWCESFSTYPRTYDLLHAWK-VFS 532 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl-iG~~hdwce~fstYprtyDl~Ha~~-~fs 532 (615)
-..|+|..+|.|.++..|..... +|+=++- ++.+...-++ |+ +-..+.=.+.++ .|.+||+|.+.+ +|.
T Consensus 38 ~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-INRKFDLITCCLDSTN 113 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-CSCCEEEEEECTTGGG
T ss_pred CCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC-ccCCceEEEEcCcccc
Confidence 35799999999999999987632 4555554 3444444333 22 222222122232 458999999998 887
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEE
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
.+.. .=+...+|-||-|+|+|||.+|+
T Consensus 114 ~~~~-~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 114 YIID-SDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GCCS-HHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCC-HHHHHHHHHHHHHhcCCCcEEEE
Confidence 5521 01478899999999999999998
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0023 Score=68.30 Aligned_cols=280 Identities=14% Similarity=0.159 Sum_probs=138.0
Q ss_pred CeEEEECCCCchHHHHHh-cCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc--
Q 007165 217 RNVLDVGCGVASFGAYLL-SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL-- 293 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~-~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~-- 293 (615)
.+||.++-+.|.++..+. ..++..++ |...+. +..+..|..... .. .+..+...||+|+.- +.-.
T Consensus 47 ~~~l~~n~~~g~~~~~~~~~~~~~~~~----~~~~~~-~~l~~~~~~~~~--~~--~~~~~~~~~d~v~~~---~Pk~k~ 114 (381)
T 3dmg_A 47 ERALDLNPGVGWGSLPLEGRMAVERLE----TSRAAF-RCLTASGLQARL--AL--PWEAAAGAYDLVVLA---LPAGRG 114 (381)
T ss_dssp SEEEESSCTTSTTTGGGBTTBEEEEEE----CBHHHH-HHHHHTTCCCEE--CC--GGGSCTTCEEEEEEE---CCGGGC
T ss_pred CcEEEecCCCCccccccCCCCceEEEe----CcHHHH-HHHHHcCCCccc--cC--CccCCcCCCCEEEEE---CCcchh
Confidence 579999999998777776 33444442 222222 223445666532 11 122234789999832 2211
Q ss_pred -cchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHH-HHhhcceEEEEeeCc--e-EEEeccCCcccccccC
Q 007165 294 -QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYD-LLKSMCWKIVSKKDQ--T-VIWAKPISNSCYLKRV 368 (615)
Q Consensus 294 -~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~-La~~l~W~l~~~~~~--~-aiwqKP~~~~c~~~r~ 368 (615)
...+..|.++.+.|+|||.+++..... +. .+.+.. +...+.|....+++. . ..|++
T Consensus 115 ~~~~~~~l~~~~~~l~~g~~i~~~g~~~-----~g---~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----------- 175 (381)
T 3dmg_A 115 TAYVQASLVAAARALRMGGRLYLAGDKN-----KG---FERYFKEARALLGYGVVVRREGPYRVALLEK----------- 175 (381)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEGG-----GT---HHHHHHHHHHHHSCEEEEEEETTEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEccH-----HH---HHHHHHHHHhhhccccccccccCcEEEEEEc-----------
Confidence 123568899999999999999987432 11 222222 233344544433322 1 22221
Q ss_pred CCCCCCCCCCCCCCCccccccccccccccccccccccCCCCCCCCCCcCCCCCCccccCCChhhhhhhHhhHHHHHHHHH
Q 007165 369 PGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYW 448 (615)
Q Consensus 369 ~~~~P~lC~~~~~pd~~wy~~l~~Ci~~~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~g~~~~~~~~d~~~W~~~v~~y~ 448 (615)
....|. ....|. .....+ .+ . .-++...|.-. +.......++...+.+..+
T Consensus 176 ~~~~p~-------~~~~w~-~~~~~~---~g-------~-----~~~~~~~pgvF-----s~~~~d~~t~~ll~~l~~~- 226 (381)
T 3dmg_A 176 EKEAPP-------LPSLWR-AFSARI---LG-------A-----EYTFHHLPGVF-----SAGKVDPASLLLLEALQER- 226 (381)
T ss_dssp CSCCCC-------CCCCCE-EEEEEE---TT-------E-----EEEEEECTTCT-----TTTSCCHHHHHHHHHHHHH-
T ss_pred cCCCCC-------Cccccc-eeeEEe---cC-------c-----eEEEEeCCCce-----eCCCCCHHHHHHHHHHHHh-
Confidence 011121 112232 111111 00 0 00111111111 1111222344444444322
Q ss_pred HhhhccccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHh----hccc-ccccccccccCCCCCCcc
Q 007165 449 KQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGL-IGTVHDWCESFSTYPRTY 522 (615)
Q Consensus 449 ~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy----~RGl-iG~~hdwce~fstYprty 522 (615)
+. .....=.+|+|+.+|.|.++.+|..... +|+=+|. +..+...- ..|+ +-+++.=++.+..=..+|
T Consensus 227 --l~--~~~~~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~f 299 (381)
T 3dmg_A 227 --LG--PEGVRGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARF 299 (381)
T ss_dssp --HC--TTTTTTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCE
T ss_pred --hc--ccCCCCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCe
Confidence 21 0111234799999999999999876642 4444443 23333322 1222 222332222222113699
Q ss_pred ceecccccccccccC-CCChhhhhhhhcccccCCcEEEEEcC
Q 007165 523 DLLHAWKVFSEIEER-GCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 523 Dl~Ha~~~fs~~~~~-~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
|+|-++..|...... .-....++-++-|+|+|||.++|--.
T Consensus 300 D~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 300 DIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp EEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 999999877731110 11356788999999999999999644
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0013 Score=63.17 Aligned_cols=143 Identities=14% Similarity=0.160 Sum_probs=89.0
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc-------cccc-ccccccCCCCCCcccee
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-------IGTV-HDWCESFSTYPRTYDLL 525 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl-------iG~~-hdwce~fstYprtyDl~ 525 (615)
.-..|+|..+|.|.++.+|.... ..-+|+-+|- +.-+...-++ |+ +-++ .|. +..+.-+.+||+|
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V 106 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL-VYRDKRFSGYDAA 106 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS-SSCCGGGTTCSEE
T ss_pred CCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc-cccccccCCCCEE
Confidence 34589999999999999998642 1124444443 3444443332 11 2222 233 3333334699999
Q ss_pred cccccccccccCCCChhhhhhhhcccccCCcEEEEEcChhH----------------------HHHHH----HHHhhcCc
Q 007165 526 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSI----------------------INYIR----KFITALKW 579 (615)
Q Consensus 526 Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~~----------------------~~~~~----~~~~~~~w 579 (615)
-+..++..+... .+..++-|+-|+|+|||.+|+-+..+. .++++ .++..-.+
T Consensus 107 ~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf 184 (219)
T 3jwg_A 107 TVIEVIEHLDEN--RLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGY 184 (219)
T ss_dssp EEESCGGGCCHH--HHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTE
T ss_pred EEHHHHHhCCHH--HHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCc
Confidence 999998865321 356899999999999998887544322 23344 77777777
Q ss_pred cceeeccccccCcCCCCCceEEEEEec
Q 007165 580 DGWLSEVEPRIDALSSSEERVLIAKKK 606 (615)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~e~~l~~~k~ 606 (615)
++...-+- ...+......+|-|++|+
T Consensus 185 ~v~~~~~g-~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 185 SVRFLQIG-EIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp EEEEEEES-CCCTTSCCSEEEEEEEEC
T ss_pred EEEEEecC-CccccCCCCeEEEEEecc
Confidence 77433221 222334467899999986
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0012 Score=65.47 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhccc-ccccccccccC
Q 007165 438 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESF 515 (615)
Q Consensus 438 ~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGl-iG~~hdwce~f 515 (615)
..|........+.+...+. .-..|+|+.+|.|.++..|..... +|+-++- +..|...-++-- +-..+.=.+.+
T Consensus 31 ~~~~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~ 105 (263)
T 3pfg_A 31 KDYHREAADLAALVRRHSP--KAASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMRDF 105 (263)
T ss_dssp CCHHHHHHHHHHHHHHHCT--TCCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTC
T ss_pred CCHHHHHHHHHHHHHhhCC--CCCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChHHC
Confidence 3455544443344432222 235799999999999999987642 5666664 355555544421 12222222334
Q ss_pred CCCCCccceecccc-cccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 516 STYPRTYDLLHAWK-VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 516 stYprtyDl~Ha~~-~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
+. +.+||+|.+.+ +|..+.. .-+...+|-++-|+|+|||.++|.
T Consensus 106 ~~-~~~fD~v~~~~~~l~~~~~-~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 106 SL-GRRFSAVTCMFSSIGHLAG-QAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp CC-SCCEEEEEECTTGGGGSCH-HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred Cc-cCCcCEEEEcCchhhhcCC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 43 78999999987 8775431 113677899999999999999995
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0003 Score=66.18 Aligned_cols=112 Identities=18% Similarity=0.307 Sum_probs=75.2
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----ccc--cccc-ccccccCCCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL--IGTV-HDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGl--iG~~-hdwce~fstYprtyDl~Ha~~~fs 532 (615)
.+|+|..+|.|.++..|..... +|+=++- +..+...-+ .|+ +-+. .|..+ ++. +.+||+|.+.++|.
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN-LTF-DRQYDFILSTVVLM 108 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG-CCC-CCCEEEEEEESCGG
T ss_pred CeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh-CCC-CCCceEEEEcchhh
Confidence 4899999999999999986643 5555553 233443322 232 2222 23333 343 78999999999887
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEEcC--------------hhHHHHHHHHHhhcCccc
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDK--------------SSIINYIRKFITALKWDG 581 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iird~--------------~~~~~~~~~~~~~~~w~~ 581 (615)
.+.. =+...++-++-|+|+|||.++|-+. .-..+++++++.. |+.
T Consensus 109 ~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~ 167 (199)
T 2xvm_A 109 FLEA--KTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WER 167 (199)
T ss_dssp GSCG--GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEE
T ss_pred hCCH--HHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeE
Confidence 5432 1478899999999999999877531 1135677788877 876
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0005 Score=65.78 Aligned_cols=114 Identities=17% Similarity=0.211 Sum_probs=81.2
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc-ccccccccccccCCCCCCccceecccccccccccCC
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR-GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 538 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R-GliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~~~ 538 (615)
..|+|..+|.|.++..|.+... +|+-++- +..+...-++ ++--...|. +.++ -+.+||+|.+.+++..+..
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~~-- 117 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLF-HQLD-AIDAYDAVWAHACLLHVPR-- 117 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCG-GGCC-CCSCEEEEEECSCGGGSCH--
T ss_pred CcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeee-ccCC-CCCcEEEEEecCchhhcCH--
Confidence 4799999999999999987633 5555554 3555555554 332222332 2334 5789999999998875431
Q ss_pred CChhhhhhhhcccccCCcEEEEEcCh---------------hHHHHHHHHHhhcC-ccc
Q 007165 539 CSFEDLLIEMDRMLRPEGFVIIRDKS---------------SIINYIRKFITALK-WDG 581 (615)
Q Consensus 539 c~~~~i~~EmdRilRp~g~~iird~~---------------~~~~~~~~~~~~~~-w~~ 581 (615)
=+...+|-|+-|+|+|||.+++.... -..+++++++..-. |+.
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~ 176 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWAS 176 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEE
Confidence 14678999999999999999997322 24678888888888 886
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0012 Score=61.30 Aligned_cols=115 Identities=14% Similarity=0.135 Sum_probs=75.3
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhccc-ccccc-cccccCCCCCCccceeccc-cccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL-IGTVH-DWCESFSTYPRTYDLLHAW-KVFSEIEE 536 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGl-iG~~h-dwce~fstYprtyDl~Ha~-~~fs~~~~ 536 (615)
.+|+|..+|.|.++.+|..... +|+-++- +..+...-++.- +-+.+ |..+ ++.-+.+||+|.++ .++..+..
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~~~~D~i~~~~~~~~~~~~ 123 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSV-DQISETDFDLIVSAGNVMGFLAE 123 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-SCCCCCCEEEEEECCCCGGGSCH
T ss_pred CeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEccccc-CCCCCCceeEEEECCcHHhhcCh
Confidence 4799999999999999986643 4555553 233433333210 22222 3222 22224789999998 56664321
Q ss_pred CCCChhhhhhhhcccccCCcEEEEEcChh---HHHHHHHHHhhcCccc
Q 007165 537 RGCSFEDLLIEMDRMLRPEGFVIIRDKSS---IINYIRKFITALKWDG 581 (615)
Q Consensus 537 ~~c~~~~i~~EmdRilRp~g~~iird~~~---~~~~~~~~~~~~~w~~ 581 (615)
. ....++-++-|+|+|||.+++-.... ..+++.+++....++.
T Consensus 124 ~--~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~ 169 (195)
T 3cgg_A 124 D--GREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLEL 169 (195)
T ss_dssp H--HHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEE
T ss_pred H--HHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEE
Confidence 1 35789999999999999999964332 4677888888888876
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00045 Score=69.95 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=35.0
Q ss_pred CcEEEEecCCC-CCCC-C---CCceEEEecccccccccc--hHHHHHHHHhccCCCeEEEE
Q 007165 262 PSTLGVLGTKR-LPYP-S---RSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 262 ~~~~~v~d~~~-Lpfp-d---~sFDlV~~s~~~l~~~~d--~~~~L~ei~RvLkPGG~Lvi 315 (615)
++.+..+|+.. ++.. + ..||+|+.-...-.-.++ ...+|.++.++|+|||.|+.
T Consensus 151 ~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 151 TLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 35577778544 4422 2 279999963211111223 25699999999999999985
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00093 Score=77.34 Aligned_cols=108 Identities=14% Similarity=0.096 Sum_probs=63.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC-------CCccccCChhchhHHHHHHHHH-----cCCCc-EEEEecCCCC-CCCCCCc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALE-----RGIPS-TLGVLGTKRL-PYPSRSF 280 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-------~V~gvdis~~Dls~a~i~~A~e-----rg~~~-~~~v~d~~~L-pfpd~sF 280 (615)
...+|||.|||+|.++..++.. .+.|+|+.+..+..+..+.... .+... .+...|.... +...+.|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 3468999999999999887753 2455655554333321111111 22322 3443344332 2345789
Q ss_pred eEEEecccccc-cc-c-------------------------c-hHHHHHHHHhccCCCeEEEEEcCCCCC
Q 007165 281 ELAHCSRCRID-WL-Q-------------------------R-DGILLLELDRLLRPGGYFVYSSPEAYA 322 (615)
Q Consensus 281 DlV~~s~~~l~-~~-~-------------------------d-~~~~L~ei~RvLkPGG~Lvis~P~~~~ 322 (615)
|+|+++--... +. . + ...++..+.+.|+|||++++..|..+.
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~L 470 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYL 470 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHH
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHh
Confidence 99998532111 00 0 1 123678899999999999999988653
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0024 Score=62.53 Aligned_cols=92 Identities=8% Similarity=-0.005 Sum_probs=56.0
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhchhHHHHHHHHHcCC----CcEEEEecCCC---------------C
Q 007165 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKR---------------L 273 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~---~~V~gvdis~~Dls~a~i~~A~erg~----~~~~~v~d~~~---------------L 273 (615)
.++|||+||| ..+..++. .+|++++..+.....+. +...+.|. ++.+..+++.. +
T Consensus 31 a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar-~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 31 AEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMK-AWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp CSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHH-HHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 4789999985 55666654 35666666554333332 22223354 46777777543 2
Q ss_pred C--------C-CCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEE
Q 007165 274 P--------Y-PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 274 p--------f-pd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
+ . ..++||+|+.-. .. ....+..+.+.|+|||.+++.
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg-~k-----~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDG-RF-----RVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECS-SS-----HHHHHHHHHHHCSSCEEEEET
T ss_pred HHHhhhhhccccCCCCCEEEEeC-CC-----chhHHHHHHHhcCCCeEEEEe
Confidence 2 1 237899999654 11 125566677999999999763
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00037 Score=75.26 Aligned_cols=70 Identities=11% Similarity=-0.048 Sum_probs=49.4
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc--CC-CcEEEEecCCCC-CC-CCCCceEEEec
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER--GI-PSTLGVLGTKRL-PY-PSRSFELAHCS 286 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er--g~-~~~~~v~d~~~L-pf-pd~sFDlV~~s 286 (615)
+.+|||+|||+|..+..|+.. .|+++|+++..+..+..+. ... |+ ++.+.++|+... +. ++++||+|++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~-~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNI-PLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhH-HHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 478999999999999988864 5777777666655444322 222 54 578899997763 32 34689999984
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.014 Score=61.92 Aligned_cols=96 Identities=11% Similarity=0.017 Sum_probs=57.9
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcE-EEEec-CCCCCCCCCCceEEEeccccccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST-LGVLG-TKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~-~~v~d-~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
.+||.|+.+.|.++..|+...++.++=+-. ...+..+.....++... +...+ .+.+ ...||+|+.-. -....
T Consensus 40 ~~~~~~~d~~gal~~~~~~~~~~~~~ds~~-~~~~~~~n~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~l--pk~~~ 113 (375)
T 4dcm_A 40 GPVLILNDAFGALSCALAEHKPYSIGDSYI-SELATRENLRLNGIDESSVKFLDSTADY---PQQPGVVLIKV--PKTLA 113 (375)
T ss_dssp SCEEEECCSSSHHHHHTGGGCCEEEESCHH-HHHHHHHHHHHTTCCGGGSEEEETTSCC---CSSCSEEEEEC--CSCHH
T ss_pred CCEEEECCCCCHHHHhhccCCceEEEhHHH-HHHHHHHHHHHcCCCccceEeccccccc---ccCCCEEEEEc--CCCHH
Confidence 469999999999999988766665532221 11222233334455321 22222 2222 36799988421 22233
Q ss_pred chHHHHHHHHhccCCCeEEEEEcC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.....|..+...|+||+.+++...
T Consensus 114 ~l~~~L~~l~~~l~~~~~i~~~g~ 137 (375)
T 4dcm_A 114 LLEQQLRALRKVVTSDTRIIAGAK 137 (375)
T ss_dssp HHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEEEec
Confidence 445678899999999999987663
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00047 Score=67.58 Aligned_cols=93 Identities=16% Similarity=0.263 Sum_probs=65.9
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcccccccc-ccc---ccCCCCCCccceecccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVH-DWC---ESFSTYPRTYDLLHAWKVFSEIE 535 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGliG~~h-dwc---e~fstYprtyDl~Ha~~~fs~~~ 535 (615)
..|+|..+|.|.++.+|..... +|+-++- +..+...-++ +-..+ |-. ++|. +.+||+|.+.+++..+.
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~--~~~fD~i~~~~~l~~~~ 115 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLP--DKYLDGVMISHFVEHLD 115 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSC--TTCBSEEEEESCGGGSC
T ss_pred CeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcC--CCCeeEEEECCchhhCC
Confidence 5799999999999998876532 3444553 3555555555 22222 222 2333 38999999999988654
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 536 ERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 536 ~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
. -++..+|-||-|+|+|||.++|..
T Consensus 116 ~--~~~~~~l~~~~~~LkpgG~l~~~~ 140 (240)
T 3dli_A 116 P--ERLFELLSLCYSKMKYSSYIVIES 140 (240)
T ss_dssp G--GGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred c--HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 2 246899999999999999999974
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00052 Score=71.09 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=42.8
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----CCCcEEEEecCCCCC--CC---CCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLP--YP---SRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~d~~~Lp--fp---d~sFDlV~~ 285 (615)
..+|||+|||+|.++..++++. .+..+.+.|.++.+++.|+++ +.++.+..+|...++ ++ ..+||.|++
T Consensus 27 g~~vLD~g~G~G~~s~~la~~~-~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~ 104 (301)
T 1m6y_A 27 EKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILM 104 (301)
T ss_dssp TCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEE
T ss_pred CCEEEEEeCCcCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEEEE
Confidence 4689999999999999988641 022334445555566666554 245667777765554 11 145777664
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0013 Score=62.35 Aligned_cols=114 Identities=15% Similarity=0.191 Sum_probs=78.7
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc---ccccccccccCCCCCCccceecccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl---iG~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
.|+|+.+|.|.++.+|...+- .+|+-++- +..+...-++ |+ +-.++.=.+.++.-+.+||+|.+.+++..
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSE--EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCCCHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence 899999999999999987643 35555654 3555544444 43 22222222333322489999999998875
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEcC------------------------------hhHHHHHHHHHhhcCccc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK------------------------------SSIINYIRKFITALKWDG 581 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird~------------------------------~~~~~~~~~~~~~~~w~~ 581 (615)
+. +...+|-|+-|+|+|||.++|.+. ....++++++++.-.++.
T Consensus 124 ~~----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 197 (219)
T 3dlc_A 124 WE----DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISS 197 (219)
T ss_dssp CS----CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSS
T ss_pred cc----CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCe
Confidence 42 478899999999999999999742 122367777888777875
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00087 Score=65.67 Aligned_cols=119 Identities=17% Similarity=0.232 Sum_probs=77.9
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcc------cccccccccccCCCCCCccceecccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG------LIGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RG------liG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
.-.+|+|..+|.|.++.+|...- .-+|+=++- +..+...-++. -+-.++.=.+.++.-+.+||+|.++.++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence 35689999999999999987653 113444442 23344333221 0112221133344334589999999888
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEcCh---------------hHHHHHHHHHhhcCccc
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS---------------SIINYIRKFITALKWDG 581 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird~~---------------~~~~~~~~~~~~~~w~~ 581 (615)
..+... .+..+|-|+-|+|+|||.++|.|.. ...+++++++....++.
T Consensus 157 ~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 219 (241)
T 2ex4_A 157 GHLTDQ--HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSL 219 (241)
T ss_dssp GGSCHH--HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCE
T ss_pred hhCCHH--HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeE
Confidence 754321 2468999999999999999996631 14778888888888876
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0057 Score=62.77 Aligned_cols=135 Identities=11% Similarity=0.071 Sum_probs=78.1
Q ss_pred CCCeEEEECCCCchHHHHHh---------cCCCccccCChhc------------------------hhHH-HHHHHHHcC
Q 007165 215 NIRNVLDVGCGVASFGAYLL---------SHDIIAMSLAPND------------------------VHEN-QIQFALERG 260 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~---------~~~V~gvdis~~D------------------------ls~a-~i~~A~erg 260 (615)
.++.|||+|+..|..+..++ +++++++|..... .... ..+...+.|
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 34789999999998776653 3467677753211 0011 112223334
Q ss_pred C---CcEEEEecCC-CCC-CCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHH
Q 007165 261 I---PSTLGVLGTK-RLP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMY 335 (615)
Q Consensus 261 ~---~~~~~v~d~~-~Lp-fpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~ 335 (615)
+ ++.+..+++. .+| +++++||+|+.-. - .-......|..+...|+|||++++.+... .+...+.|.
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDa-D--~y~~~~~~Le~~~p~L~pGGiIv~DD~~~---~~G~~~Av~--- 256 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG-D--LYESTWDTLTNLYPKVSVGGYVIVDDYMM---CPPCKDAVD--- 256 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECC-C--SHHHHHHHHHHHGGGEEEEEEEEESSCTT---CHHHHHHHH---
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC-C--ccccHHHHHHHHHhhcCCCEEEEEcCCCC---CHHHHHHHH---
Confidence 3 4888888853 344 4457899999543 1 11223468999999999999999866422 133334444
Q ss_pred HHHhhcceEE--EEeeCceEEEecc
Q 007165 336 DLLKSMCWKI--VSKKDQTVIWAKP 358 (615)
Q Consensus 336 ~La~~l~W~l--~~~~~~~aiwqKP 358 (615)
++.+...+.. ..-....+.|+|+
T Consensus 257 Ef~~~~~i~~~i~~~~~~~v~~rk~ 281 (282)
T 2wk1_A 257 EYRAKFDIADELITIDRDGVYWQRT 281 (282)
T ss_dssp HHHHHTTCCSCCEECSSSCEEEECC
T ss_pred HHHHhcCCceEEEEecCEEEEEEeC
Confidence 4444433332 2222345677764
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00072 Score=67.44 Aligned_cols=98 Identities=14% Similarity=0.286 Sum_probs=65.2
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc----cc--ccccccccccCCCCCCccceeccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GL--IGTVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R----Gl--iG~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
.=.+|+|+.+|.|.++..|... |. .+|+=++- ++.+...-++ |+ +-....=.+.++.-+.+||+|++..+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPD--AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 3458999999999999988754 21 13444443 3444443332 33 22222222233433579999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+..+. +...+|-+|-|+|+|||++++.+
T Consensus 115 l~~~~----~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 115 LEHLQ----SPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp GGGCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 88543 36789999999999999999975
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00075 Score=64.77 Aligned_cols=97 Identities=15% Similarity=0.256 Sum_probs=64.9
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhccc--ccccc-cccccCCCCCCccceeccccccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL--IGTVH-DWCESFSTYPRTYDLLHAWKVFSEI 534 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGl--iG~~h-dwce~fstYprtyDl~Ha~~~fs~~ 534 (615)
.-..|+|..+|.|.++.+|..... +|+-++- +..+...-++-- +-.++ |..+ ++ .|.+||+|.+.++|..+
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~~ 119 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEGDFLS-FE-VPTSIDTIVSTYAFHHL 119 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESCCSSS-CC-CCSCCSEEEEESCGGGS
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeCChhh-cC-CCCCeEEEEECcchhcC
Confidence 345799999999999999986632 4555553 344544444311 22222 2222 22 23899999999988854
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
... ....+|-|+-|+|+|||.++|.+
T Consensus 120 ~~~--~~~~~l~~~~~~LkpgG~l~i~~ 145 (220)
T 3hnr_A 120 TDD--EKNVAIAKYSQLLNKGGKIVFAD 145 (220)
T ss_dssp CHH--HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ChH--HHHHHHHHHHHhcCCCCEEEEEe
Confidence 331 12348999999999999999985
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00093 Score=68.37 Aligned_cols=98 Identities=10% Similarity=0.194 Sum_probs=66.5
Q ss_pred eeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc----ccccccccccccCCCCCCccceecccccccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GLIGTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R----GliG~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
-..|+|..+|.|+++..|... .. +|+=++- +..+...-++ |+-....--+..+...|.+||+|.+.++|..
T Consensus 91 ~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~~ 167 (318)
T 2fk8_A 91 GMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEH 167 (318)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred cCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHHh
Confidence 347999999999999888754 33 5555553 3555554444 4422111112222334689999999998875
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+.. -+...++-|+-|+|+|||.++|.+
T Consensus 168 ~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 168 FGH--ENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp TCG--GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cCH--HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 532 247889999999999999999964
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.002 Score=62.41 Aligned_cols=93 Identities=22% Similarity=0.285 Sum_probs=63.5
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcc--cccccccccccCCCCCCccceecccccccccccCC
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG--LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 538 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RG--liG~~hdwce~fstYprtyDl~Ha~~~fs~~~~~~ 538 (615)
.|+|..+|.|.++..|...-. +|+=+|- +..+...-++- -+-..+.-.+.+ ..+.+||+|++.+++..+.
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~--- 117 (250)
T 2p7i_A 45 NLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID--- 117 (250)
T ss_dssp CEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS---
T ss_pred cEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc---
Confidence 599999999999999976532 4444443 24444443331 111222222222 2468999999999988553
Q ss_pred CChhhhhhhhc-ccccCCcEEEEEc
Q 007165 539 CSFEDLLIEMD-RMLRPEGFVIIRD 562 (615)
Q Consensus 539 c~~~~i~~Emd-RilRp~g~~iird 562 (615)
+...+|-|+- |+|+|||.++|.+
T Consensus 118 -~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 118 -DPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHhcCCCCEEEEEc
Confidence 3688999999 9999999999975
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0015 Score=61.85 Aligned_cols=115 Identities=11% Similarity=0.159 Sum_probs=81.2
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcc--cccccccccccCCCCCCccceecccccccccccC
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG--LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER 537 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RG--liG~~hdwce~fstYprtyDl~Ha~~~fs~~~~~ 537 (615)
..|+|+.+|.|.++..|..... +|+-++- +..+...-++. +-=+..|. +.++.-+.+||+|.+.++|..+..
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~- 117 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTI-TDLSDSPKRWAGLLAWYSLIHMGP- 117 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCG-GGGGGSCCCEEEEEEESSSTTCCT-
T ss_pred CeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcc-cccccCCCCeEEEEehhhHhcCCH-
Confidence 4699999999999999986632 4555553 34555554442 11112222 233333489999999998885532
Q ss_pred CCChhhhhhhhcccccCCcEEEEEcCh----------------hHHHHHHHHHhhcCccc
Q 007165 538 GCSFEDLLIEMDRMLRPEGFVIIRDKS----------------SIINYIRKFITALKWDG 581 (615)
Q Consensus 538 ~c~~~~i~~EmdRilRp~g~~iird~~----------------~~~~~~~~~~~~~~w~~ 581 (615)
=+...+|-|+-|+|+|||.++|.+.. ...+++++++....|+.
T Consensus 118 -~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 176 (203)
T 3h2b_A 118 -GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQV 176 (203)
T ss_dssp -TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEE
T ss_pred -HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcE
Confidence 25889999999999999999997522 23788999999999987
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00058 Score=72.87 Aligned_cols=140 Identities=9% Similarity=0.115 Sum_probs=96.0
Q ss_pred hhHhhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhccccccccccc-
Q 007165 435 EDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWC- 512 (615)
Q Consensus 435 ~d~~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGliG~~hdwc- 512 (615)
..+..|......+...+-..+....=..|+|+.+|-|.++..|..... +|+=+|- ++.+...-++|+-.......
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~ 159 (416)
T 4e2x_A 83 SGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFFEK 159 (416)
T ss_dssp GGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCCSH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeeech
Confidence 345667777776655443344444446899999999999999987643 6666664 47777777776532221111
Q ss_pred ---ccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh--------------------hHHHH
Q 007165 513 ---ESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS--------------------SIINY 569 (615)
Q Consensus 513 ---e~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~--------------------~~~~~ 569 (615)
+.++.-+.+||+|.+.++|..+. +...+|-|+-|+|+|||.++|.... -..+.
T Consensus 160 ~~~~~l~~~~~~fD~I~~~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 235 (416)
T 4e2x_A 160 ATADDVRRTEGPANVIYAANTLCHIP----YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATS 235 (416)
T ss_dssp HHHHHHHHHHCCEEEEEEESCGGGCT----THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHH
T ss_pred hhHhhcccCCCCEEEEEECChHHhcC----CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHH
Confidence 11111137899999999998664 4899999999999999999997421 11356
Q ss_pred HHHHHhhcCccc
Q 007165 570 IRKFITALKWDG 581 (615)
Q Consensus 570 ~~~~~~~~~w~~ 581 (615)
++.++..-.++.
T Consensus 236 l~~ll~~aGf~~ 247 (416)
T 4e2x_A 236 VQGMAQRCGFEL 247 (416)
T ss_dssp HHHHHHHTTEEE
T ss_pred HHHHHHHcCCEE
Confidence 777888777765
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.011 Score=59.85 Aligned_cols=93 Identities=18% Similarity=0.155 Sum_probs=54.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC--------CCcccc--CChhchhHHHHHHHHHcCCCc-EEEEe-cCCCCCCCCCCceE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--------DIIAMS--LAPNDVHENQIQFALERGIPS-TLGVL-GTKRLPYPSRSFEL 282 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--------~V~gvd--is~~Dls~a~i~~A~erg~~~-~~~v~-d~~~Lpfpd~sFDl 282 (615)
++.+|||+||+.|+|+.+.++. .++++| +.+.+.. ..|.++ .+..+ |...++ ...+|+
T Consensus 73 pg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~--------~~Gv~~i~~~~G~Df~~~~--~~~~Dv 142 (269)
T 2px2_A 73 PIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ--------SYGWNIVTMKSGVDVFYKP--SEISDT 142 (269)
T ss_dssp CCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC--------STTGGGEEEECSCCGGGSC--CCCCSE
T ss_pred CCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc--------CCCceEEEeeccCCccCCC--CCCCCE
Confidence 4578999999999999999865 123333 2221110 012222 33335 766543 468999
Q ss_pred EEecccccc---cccchH---HHHHHHHhccCCCe-EEEEEcC
Q 007165 283 AHCSRCRID---WLQRDG---ILLLELDRLLRPGG-YFVYSSP 318 (615)
Q Consensus 283 V~~s~~~l~---~~~d~~---~~L~ei~RvLkPGG-~Lvis~P 318 (615)
|+|-.+ -. ..-|.. .+|.-+.++|+||| .|++-..
T Consensus 143 VLSDMA-PnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 143 LLCDIG-ESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred EEeCCC-CCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 997442 22 111211 14656669999999 8888653
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0036 Score=63.81 Aligned_cols=135 Identities=14% Similarity=0.065 Sum_probs=85.8
Q ss_pred eeeeeccccchhHHhhhc--CCCcEEEEeccCCC-CCchhHHhh----ccc---cccc-ccccccCCCCCCccceecccc
Q 007165 461 RNVMDMNSNLGGFAAALK--DKDVWVMNVAPVRM-SARLKIIYD----RGL---IGTV-HDWCESFSTYPRTYDLLHAWK 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~--~~~vwvmnvvp~~~-~~tL~~iy~----RGl---iG~~-hdwce~fstYprtyDl~Ha~~ 529 (615)
..|+|+.+|.|.++.+|. ..|-. +|+-+|- +..+...-+ .|+ +-++ .|..+ ++ +|.+||+|.+++
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~ 195 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSACPGV--QLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK-LD-TREGYDLLTSNG 195 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTCTTC--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG-CC-CCSCEEEEECCS
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCC--eEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc-CC-ccCCeEEEEECC
Confidence 469999999999999984 34432 3444443 344444332 233 2222 23333 32 459999999998
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEEcCh---------------------------------------hHHHHH
Q 007165 530 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS---------------------------------------SIINYI 570 (615)
Q Consensus 530 ~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~---------------------------------------~~~~~~ 570 (615)
++..+... -....++-|+-|+|+|||.++|.+-. ...+++
T Consensus 196 ~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 196 LNIYEPDD-ARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SGGGCCCH-HHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred hhhhcCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 87743221 12334799999999999999998711 247888
Q ss_pred HHHHhhcCccceeeccccccCcCCCCCceEEEEEec
Q 007165 571 RKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKK 606 (615)
Q Consensus 571 ~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~l~~~k~ 606 (615)
+++++.-.++.. ...+ . ....-..++++|+
T Consensus 275 ~~~l~~aGF~~v-~~~~-~----~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 275 RAQLEEAGFTDL-RFED-D----RARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHTTCEEE-EEEC-C----TTSSSCEEEEECC
T ss_pred HHHHHHCCCEEE-EEEc-c----cCceeeEEEEecC
Confidence 899998888862 2221 1 1234568888884
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.001 Score=67.69 Aligned_cols=98 Identities=11% Similarity=0.212 Sum_probs=68.5
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc----ccc---cc-cccccccCCCCCCccceeccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GLI---GT-VHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R----Gli---G~-~hdwce~fstYprtyDl~Ha~ 528 (615)
.-..|+|+.+|-|+++..|... + .+|+=++- ++.+...-++ |+- -+ ..|+ +.| +.+||+|.+.
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~---~~~fD~v~~~ 144 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW-EEF---DEPVDRIVSL 144 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCG-GGC---CCCCSEEEEE
T ss_pred CcCEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCH-HHc---CCCccEEEEc
Confidence 3357999999999999999765 5 25565653 3555554443 442 12 2343 333 7999999999
Q ss_pred cccccccc-----CCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 529 KVFSEIEE-----RGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 529 ~~fs~~~~-----~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
++|..+.. ..-....++-|+-|+|+|||.++|.+-
T Consensus 145 ~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 145 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred chHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 98875522 112457899999999999999999753
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0015 Score=62.65 Aligned_cols=104 Identities=16% Similarity=0.234 Sum_probs=71.2
Q ss_pred cccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcc----cccccccccccCCCCCCccceeccc
Q 007165 454 VAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----LIGTVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 454 ~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RG----liG~~hdwce~fstYprtyDl~Ha~ 528 (615)
.+....-.+|+|+.+|.|.++..|...- .+|+=+|- +..+...-++. -+-.++.=.+.++ -+.+||+|.+.
T Consensus 46 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~ 121 (216)
T 3ofk_A 46 SLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVA 121 (216)
T ss_dssp HTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEE
T ss_pred HcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEc
Confidence 3455667889999999999999998762 36766664 34555544432 1223332233334 36899999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
++|..+.. .-.+..+|-|+-|+|+|||.++|.+
T Consensus 122 ~~l~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 122 EVLYYLED-MTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp SCGGGSSS-HHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cHHHhCCC-HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 88875432 1124567999999999999999954
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0023 Score=58.84 Aligned_cols=128 Identities=15% Similarity=0.178 Sum_probs=85.8
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc--ccccccccccccCCCCCCccceecccccccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR--GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 535 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R--GliG~~hdwce~fstYprtyDl~Ha~~~fs~~~ 535 (615)
.-..|+|+.+|.|.++.+|...- . +|+-++- +..+...-++ .+--+..| .+|. ..+||++.+..++..+.
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~--~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFA-T--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIP--DNSVDFILFANSFHDMD 89 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTE-E--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSC--TTCEEEEEEESCSTTCS
T ss_pred CCCeEEEECCCCCHHHHHHHhhc-C--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCC--CCceEEEEEccchhccc
Confidence 34679999999999999998764 2 6666664 3555555444 11112223 3333 47899999999888553
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEEcChh-------------HHHHHHHHHhhcCccceeeccccccCcCCCCCceEEE
Q 007165 536 ERGCSFEDLLIEMDRMLRPEGFVIIRDKSS-------------IINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLI 602 (615)
Q Consensus 536 ~~~c~~~~i~~EmdRilRp~g~~iird~~~-------------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~l~ 602 (615)
+...++-|+-|+|+|||.+++.+-.. ..+++++++. .|+.. ...+ . ....-.|+
T Consensus 90 ----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~-~~~~--~----~~~~~~l~ 156 (170)
T 3i9f_A 90 ----DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVE-KRFN--P----TPYHFGLV 156 (170)
T ss_dssp ----CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEE-EEEC--S----STTEEEEE
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEE-EccC--C----CCceEEEE
Confidence 47899999999999999999975321 2567777777 67652 2211 1 12456777
Q ss_pred EEec
Q 007165 603 AKKK 606 (615)
Q Consensus 603 ~~k~ 606 (615)
+.|+
T Consensus 157 ~~~~ 160 (170)
T 3i9f_A 157 LKRK 160 (170)
T ss_dssp EEEC
T ss_pred EecC
Confidence 7764
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0055 Score=59.56 Aligned_cols=114 Identities=13% Similarity=0.156 Sum_probs=78.6
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc---ccc-cccccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL---IGT-VHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl---iG~-~hdwce~fstYprtyDl~Ha~~~f 531 (615)
.+|+|+.+|.|.++..|..... +|+=+|- +..+...-++ |+ +-+ -.|..+ ++ -+.+||+|.+.++|
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-WR-PTELFDLIFDYVFF 142 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-CC-CSSCEEEEEEESST
T ss_pred CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-CC-CCCCeeEEEEChhh
Confidence 4899999999999999987532 4555553 3444443333 22 112 223333 22 34589999999988
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEcCh-----------hHHHHHHHHHhhcCccc
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-----------SIINYIRKFITALKWDG 581 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird~~-----------~~~~~~~~~~~~~~w~~ 581 (615)
..+.. -....++-|+-|+|+|||.+|+-+-. -..+++++++..-.|+.
T Consensus 143 ~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 201 (235)
T 3lcc_A 143 CAIEP--EMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKA 201 (235)
T ss_dssp TTSCG--GGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEE
T ss_pred hcCCH--HHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeE
Confidence 85432 25788999999999999999985431 13678899999888886
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0012 Score=64.21 Aligned_cols=114 Identities=14% Similarity=0.143 Sum_probs=78.2
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhccc---ccccccccccCCCCCCccceeccccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL---IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 536 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGl---iG~~hdwce~fstYprtyDl~Ha~~~fs~~~~ 536 (615)
..|+|..+|.|.++.+|..... +|+-++- +..+...-+++. +-..+.-.+.++.-+.+||+|.+.++|..+.
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 130 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE- 130 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS-
T ss_pred CeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc-
Confidence 3799999999999999987643 4555553 356666655531 1112222223333357999999999888553
Q ss_pred CCCChhhhhhhhcccccCCcEEEEEcCh----------------------hHHHHHHHHHhhcCccc
Q 007165 537 RGCSFEDLLIEMDRMLRPEGFVIIRDKS----------------------SIINYIRKFITALKWDG 581 (615)
Q Consensus 537 ~~c~~~~i~~EmdRilRp~g~~iird~~----------------------~~~~~~~~~~~~~~w~~ 581 (615)
+...+|-|+-|+|+|||.++|.+.. -...+++.++..-.++.
T Consensus 131 ---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 194 (242)
T 3l8d_A 131 ---EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKV 194 (242)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEE
T ss_pred ---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEE
Confidence 4678999999999999999997511 12346777777777765
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0018 Score=61.94 Aligned_cols=98 Identities=12% Similarity=0.187 Sum_probs=66.9
Q ss_pred CceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcccccccccccccCCCC-CCccceecccccccccc
Q 007165 458 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTY-PRTYDLLHAWKVFSEIE 535 (615)
Q Consensus 458 ~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGliG~~hdwce~fstY-prtyDl~Ha~~~fs~~~ 535 (615)
..-.+|+|..+|.|.++.+|...+ .+|+=++- +..+...-++.---+..|..+.-..+ +.+||+|.+.+++..+.
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~ 107 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF 107 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSS
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcC
Confidence 344689999999999999998875 35665554 34444444433111112322211223 37999999999887543
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 536 ERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 536 ~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+...++-|+-|+|+|||.+++..
T Consensus 108 ----~~~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 108 ----DPWAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp ----CHHHHHHHTGGGEEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHHcCCCCEEEEEe
Confidence 36799999999999999999964
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0026 Score=61.41 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=75.1
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCC-CCCchhHHhhcccccccccccccCCCCCCccceecccccccccccCC
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVR-MSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 538 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~-~~~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~~~ 538 (615)
-..|+|..+|.|.++.+|... +-++ .+..+...-++++--+..| .+.++.-+.+||+|.+.+++..+.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~~~~~~d-~~~~~~~~~~fD~v~~~~~l~~~~--- 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVFVLKGT-AENLPLKDESFDFALMVTTICFVD--- 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCEEEECB-TTBCCSCTTCEEEEEEESCGGGSS---
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCCEEEEcc-cccCCCCCCCeeEEEEcchHhhcc---
Confidence 358999999999999999877 2222 2344555555543212222 233332246899999999887542
Q ss_pred CChhhhhhhhcccccCCcEEEEEcCh------------------------hHHHHHHHHHhhcCccc
Q 007165 539 CSFEDLLIEMDRMLRPEGFVIIRDKS------------------------SIINYIRKFITALKWDG 581 (615)
Q Consensus 539 c~~~~i~~EmdRilRp~g~~iird~~------------------------~~~~~~~~~~~~~~w~~ 581 (615)
+...+|-++-|+|+|||.+++.+.. -..+++++++....++.
T Consensus 117 -~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 182 (219)
T 1vlm_A 117 -DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEE 182 (219)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEE
T ss_pred -CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeE
Confidence 3688999999999999999997321 13567777888777775
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0017 Score=60.33 Aligned_cols=115 Identities=14% Similarity=0.188 Sum_probs=74.8
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc-----ccccccccccCCCCCCccceeccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-----IGTVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl-----iG~~hdwce~fstYprtyDl~Ha~ 528 (615)
.-..|+|..+|.|.++.+|.... -+|+=++- +..+...-++ |+ --+-.|+.+.+. +.+||+|.++
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~ 126 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITN 126 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEEC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEEC
Confidence 34579999999999999887662 24555553 3444443333 32 223345555444 6799999998
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcCh-hHHHHHHHHHhhcCccc
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWDG 581 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~-~~~~~~~~~~~~~~w~~ 581 (615)
..|..-.. .+..++-++-|+|+|||.+++-+.. ....++.+.+...-+++
T Consensus 127 ~~~~~~~~---~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~ 177 (194)
T 1dus_A 127 PPIRAGKE---VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNV 177 (194)
T ss_dssp CCSTTCHH---HHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCC
T ss_pred CCcccchh---HHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcce
Confidence 87762111 3678999999999999999997544 33444666666553344
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0021 Score=63.84 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=77.9
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc---ccccccccccCCCCCCccceecccccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl---iG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
-..|+|+.+|-|.++..|...+- .+|+=++- +..+...-++ |+ +-+.+.=.+.++.-+.+||+|++.++|
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~ 124 (267)
T 3kkz_A 47 KSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAI 124 (267)
T ss_dssp TCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCG
T ss_pred CCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCc
Confidence 35799999999999999987743 13444443 3444443333 33 222222224444335799999999988
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEcCh---------------------hHHHHHHHHHhhcCccc
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS---------------------SIINYIRKFITALKWDG 581 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird~~---------------------~~~~~~~~~~~~~~w~~ 581 (615)
..+ +...++-++-|+|+|||.+++.+-. ....++.+++....++.
T Consensus 125 ~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 190 (267)
T 3kkz_A 125 YNI-----GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLP 190 (267)
T ss_dssp GGT-----CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEE
T ss_pred eec-----CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEE
Confidence 754 4789999999999999999997521 13456677777777765
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00075 Score=66.37 Aligned_cols=112 Identities=16% Similarity=0.264 Sum_probs=77.0
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhh----ccc---ccc-cccccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGL---IGT-VHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~----RGl---iG~-~hdwce~fstYprtyDl~Ha~~~ 530 (615)
..|+|+.+|.|.++..|... +. +|+-++- +..+...-+ .|+ +-+ ..|. +.++.-+.+||+|++.++
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~ 123 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADYVKG---QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLPFQNEELDLIWSEGA 123 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHHCCS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCSSCTTCEEEEEEESC
T ss_pred CeEEEeCCCCCHHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCCCCCCCEEEEEecCh
Confidence 47999999999999988754 32 4555553 345554333 343 222 2343 444433489999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEcCh---------------------hHHHHHHHHHhhcCccc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS---------------------SIINYIRKFITALKWDG 581 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~---------------------~~~~~~~~~~~~~~w~~ 581 (615)
+..+ +...++-|+-|+|||||.+++.+.. ....++.+++..-.++.
T Consensus 124 l~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 190 (257)
T 3f4k_A 124 IYNI-----GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTP 190 (257)
T ss_dssp SCCC-----CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEE
T ss_pred Hhhc-----CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeE
Confidence 8854 4789999999999999999998621 12456667777777765
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0015 Score=62.63 Aligned_cols=132 Identities=15% Similarity=0.133 Sum_probs=84.9
Q ss_pred eeeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHHhhc----cc--cc-ccccccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR----GL--IG-TVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy~R----Gl--iG-~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
..|+|+.+|.|.++.+|... |-. .|+-+|- +..+...-++ |+ +- +..|. +.++.-..+||+|.+.++
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~ 115 (219)
T 3dh0_A 39 MTVLDVGTGAGFYLPYLSKMVGEKG--KVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE-NKIPLPDNTVDFIFMAFT 115 (219)
T ss_dssp CEEEESSCTTCTTHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBT-TBCSSCSSCEEEEEEESC
T ss_pred CEEEEEecCCCHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccc-ccCCCCCCCeeEEEeehh
Confidence 47999999999999988643 211 3334443 2444433332 22 11 12232 223322478999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEcC-------------hhHHHHHHHHHhhcCccceeeccccccCcCCCCC
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-------------SSIINYIRKFITALKWDGWLSEVEPRIDALSSSE 597 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~-------------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 597 (615)
+..+. +...++-|+-|+|+|||.++|.+- ....+++++++..-.++.. ...+ . ...
T Consensus 116 l~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~-~~~~--~----~~~ 184 (219)
T 3dh0_A 116 FHELS----EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVG-RVVE--V----GKY 184 (219)
T ss_dssp GGGCS----SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEE-EEEE--E----TTT
T ss_pred hhhcC----CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEE-EEEe--e----CCc
Confidence 88553 468899999999999999999752 1236888899998888862 2211 1 224
Q ss_pred ceEEEEEec
Q 007165 598 ERVLIAKKK 606 (615)
Q Consensus 598 e~~l~~~k~ 606 (615)
..+++++|.
T Consensus 185 ~~~~~~~k~ 193 (219)
T 3dh0_A 185 CFGVYAMIV 193 (219)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEEec
Confidence 667778775
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0047 Score=59.83 Aligned_cols=93 Identities=15% Similarity=0.264 Sum_probs=62.8
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc-cccc-ccccccCCCCCCccceecccc-ccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-IGTV-HDWCESFSTYPRTYDLLHAWK-VFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl-iG~~-hdwce~fstYprtyDl~Ha~~-~fs 532 (615)
..|+|..+|-|.++..|... .+|+-++- ++.+...-++ |. +-.. .|.. .++ .|.+||+|-+.. .+.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMR-ELE-LPEPVDAITILCDSLN 108 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGG-GCC-CSSCEEEEEECTTGGG
T ss_pred CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChh-hcC-CCCCcCEEEEeCCchh
Confidence 68999999999999999877 36666664 3555544433 21 1112 2222 222 468999999875 666
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEE
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
.+.. .-+...+|-++-|+|+|||.+++
T Consensus 109 ~~~~-~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 109 YLQT-EADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp GCCS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hcCC-HHHHHHHHHHHHHhcCCCeEEEE
Confidence 4421 12467889999999999999998
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0019 Score=63.35 Aligned_cols=98 Identities=15% Similarity=0.243 Sum_probs=67.2
Q ss_pred CceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----ccc--ccccccccccCCCCCCccceeccccc
Q 007165 458 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL--IGTVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 458 ~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGl--iG~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
..-.+|+|..+|.|.++.+|...-. +|+-+|- +..+...-+ +|+ +-+.+.-.+.++.-+.+||+|.+..+
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 96 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA 96 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCc
Confidence 3446899999999999999876532 5665654 344544332 233 22222223444433489999999988
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+..+. +...+|-||-|+|+|||.+++.|
T Consensus 97 l~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 97 AHHFS----DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp GGGCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 77442 47899999999999999999964
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=61.92 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=66.5
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcccccc---cccccccCCCCCCccceeccccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGT---VHDWCESFSTYPRTYDLLHAWKVFSEIEE 536 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGliG~---~hdwce~fstYprtyDl~Ha~~~fs~~~~ 536 (615)
..|+|..+|.|.++.+|..... +|+-++- +..+...-++|+-.+ -.|..+. .-+.+||+|.+.+++..+..
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~l~~~~~ 122 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW--TPDRQWDAVFFAHWLAHVPD 122 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC--CCSSCEEEEEEESCGGGSCH
T ss_pred CeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC--CCCCceeEEEEechhhcCCH
Confidence 4899999999999999876532 4555553 355555555553211 1222222 23579999999998885432
Q ss_pred CCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 537 RGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 537 ~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
-.+..+|-|+-|+|+|||.+++.+.
T Consensus 123 --~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 123 --DRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp --HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 1358899999999999999999854
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0018 Score=63.69 Aligned_cols=99 Identities=20% Similarity=0.284 Sum_probs=67.9
Q ss_pred CceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhcc----ccc-ccccccccCCCCCCccceeccccc
Q 007165 458 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRG----LIG-TVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 458 ~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~RG----liG-~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
..-.+|+|+.+|.|.++..|... .. +|+-++- ++.+...-++. -+- +..|..+ ++.-+.+||+|++.++
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~ 129 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDILT-KEFPENNFDLIYSRDA 129 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT-CCCCTTCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc-CCCCCCcEEEEeHHHH
Confidence 34458999999999999998764 32 4555543 34555554443 111 2234433 2333589999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+..+.. -+...+|-|+-|+|||||.++|.+
T Consensus 130 l~~~~~--~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 130 ILALSL--ENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp GGGSCH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhcCh--HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 886521 247889999999999999999986
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.01 Score=61.21 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=86.1
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCC-CCCchhHHhh--cccc---c-cccccc-ccCCCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVR-MSARLKIIYD--RGLI---G-TVHDWC-ESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~-~~~tL~~iy~--RGli---G-~~hdwc-e~fstYprtyDl~Ha~~~fs 532 (615)
+.|+|..||-|+|+..|..... -.|+-+| +++-|-.-.. ...+ + -..... |.++ ..+||++-++-.|.
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~--~~~fD~v~~d~sf~ 162 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFT--EGLPSFASIDVSFI 162 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCT--TCCCSEEEECCSSS
T ss_pred cEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCC--CCCCCEEEEEeeHh
Confidence 5799999999999988865532 1344455 3465654221 1111 0 011111 2232 13599999988887
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEE---------cC-------------hhHHHHHHHHHhhcCccceeecccccc
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIR---------DK-------------SSIINYIRKFITALKWDGWLSEVEPRI 590 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iir---------d~-------------~~~~~~~~~~~~~~~w~~~~~~~~~~~ 590 (615)
++..+|-|+-|+|+|||.+++= +. ..++++|...+....|.+...+..+..
T Consensus 163 -------sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~ 235 (291)
T 3hp7_A 163 -------SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQ 235 (291)
T ss_dssp -------CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSC
T ss_pred -------hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
Confidence 3688999999999999999875 11 137888999999999998554444444
Q ss_pred CcCCCCCceEEEEEe
Q 007165 591 DALSSSEERVLIAKK 605 (615)
Q Consensus 591 ~~~~~~~e~~l~~~k 605 (615)
|+. .+.|=++.++|
T Consensus 236 g~~-gn~e~l~~~~~ 249 (291)
T 3hp7_A 236 GGH-GNIEFLAHLEK 249 (291)
T ss_dssp CGG-GCCCEEEEEEE
T ss_pred CCC-cCHHHHHHhhh
Confidence 542 35677777776
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00063 Score=68.53 Aligned_cols=100 Identities=17% Similarity=0.286 Sum_probs=66.7
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cccc-------ccccccccCC---CCCCccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GLIG-------TVHDWCESFS---TYPRTYD 523 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----GliG-------~~hdwce~fs---tYprtyD 523 (615)
.-.+|+|+.+|-|.++..|.+... +|+-+|- +..|...-++ +.-+ .--|+.+ ++ --+.+||
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~fD 132 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT-LDKDVPAGDGFD 132 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG-HHHHSCCTTCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh-CccccccCCCeE
Confidence 345799999999999999987744 7777774 3566655443 1111 1112221 11 1247999
Q ss_pred eeccc-cccccccc---CCCChhhhhhhhcccccCCcEEEEEc
Q 007165 524 LLHAW-KVFSEIEE---RGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 524 l~Ha~-~~fs~~~~---~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+|++. .+|..+.. ..-....++-|+-|+|+|||.+++..
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99998 57664432 11237789999999999999999874
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0024 Score=60.78 Aligned_cols=110 Identities=16% Similarity=0.202 Sum_probs=76.5
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----ccc--cccccccccCCCCCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GLI--GTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gli--G~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
.+|+|+.+|.|.++.+|...+. .+|+=++- +..+...-++ |+- -+.+ +..++..+.+||+|.++..+..
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQK--TSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEE--SSTTTTCCSCEEEEEEESCHHH
T ss_pred CEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEe--ccccccCCCCceEEEECCcHHH
Confidence 5799999999999999887653 24555553 3444443333 432 2222 2223334689999999877652
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEc-ChhHHHHHHHHHhhcCccc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDG 581 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird-~~~~~~~~~~~~~~~~w~~ 581 (615)
+..++-++-|+|+|||.+++.+ ...-.+.+.+++....++.
T Consensus 138 -------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~ 179 (205)
T 3grz_A 138 -------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQI 179 (205)
T ss_dssp -------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEE
T ss_pred -------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCce
Confidence 5788999999999999999974 3445777888888777776
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0027 Score=64.09 Aligned_cols=96 Identities=22% Similarity=0.333 Sum_probs=65.6
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhh----ccc---ccccc-cccccCCCCCCccceeccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGL---IGTVH-DWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~----RGl---iG~~h-dwce~fstYprtyDl~Ha~ 528 (615)
.-..|+|+.+|.|.++..|... +. +|+-++- +..+...-+ .|+ +-+.+ |.. .++--+.+||+|.+.
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~ 157 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EIPCEDNSYDFIWSQ 157 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SCSSCTTCEEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcc-cCCCCCCCEeEEEec
Confidence 3358999999999999998764 43 5555553 344444333 343 22222 222 222223799999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+++..+.. ...+|-||-|+|+|||.+++.+
T Consensus 158 ~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 158 DAFLHSPD----KLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp SCGGGCSC----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhcCC----HHHHHHHHHHHcCCCeEEEEEE
Confidence 98875532 7899999999999999999985
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0052 Score=58.51 Aligned_cols=95 Identities=20% Similarity=0.314 Sum_probs=63.8
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcc-cccccccccccCCCCCCccceeccccccccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG-LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 536 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RG-liG~~hdwce~fstYprtyDl~Ha~~~fs~~~~ 536 (615)
.-.+|+|..+|-|.++..| ... +|+-++- +..+...-++. -+-+.+.-.+.++.-+.+||+|.+.+++..+.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 109 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-PYP----QKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE- 109 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-CCS----EEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS-
T ss_pred CCCeEEEECCCCCHhHHhC-CCC----eEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC-
Confidence 3458999999999999998 321 3444443 24444444441 12222222233332246999999999887543
Q ss_pred CCCChhhhhhhhcccccCCcEEEEEc
Q 007165 537 RGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 537 ~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+...+|-||-|+|+|||.++|.+
T Consensus 110 ---~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 110 ---DVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCCEEEEEe
Confidence 47899999999999999999975
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00098 Score=67.58 Aligned_cols=93 Identities=12% Similarity=0.007 Sum_probs=55.3
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHH--HHHHHHHc----C---CCcEEEEecCCC-CCCCCCCceEEE
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHEN--QIQFALER----G---IPSTLGVLGTKR-LPYPSRSFELAH 284 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a--~i~~A~er----g---~~~~~~v~d~~~-Lpfpd~sFDlV~ 284 (615)
.+|||+|||+|..+..++.+ .|+++|.++....-. .++.+++. + .++.+..+|... ++....+||+|+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~ 169 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEEE
Confidence 68999999999999988753 677887776432111 12222211 1 246788888654 342224799999
Q ss_pred ecccccccccchHHHHHHHHhccCCCe
Q 007165 285 CSRCRIDWLQRDGILLLELDRLLRPGG 311 (615)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG 311 (615)
+.-. +++. ....++++..++|++.+
T Consensus 170 lDP~-y~~~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 170 LDPM-FPHK-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp ECCC-CCCC-CC-----HHHHHHHHHS
T ss_pred EcCC-CCCc-ccchHHHHHHHHHHHhh
Confidence 7653 4442 23356777777887755
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0025 Score=60.52 Aligned_cols=129 Identities=12% Similarity=0.098 Sum_probs=80.0
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhh----ccc--cccc-ccccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGL--IGTV-HDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~----RGl--iG~~-hdwce~fstYprtyDl~Ha~~~f 531 (615)
..|+|+.+|.|.++.+|... |-. +|+-++. +..+...-+ .|+ +-++ .|+.+ +. -+.+||+|.+.++
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPEA--HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE-FP-SEPPFDGVISRAF- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTS--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT-SC-CCSCEEEEECSCS-
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhh-CC-ccCCcCEEEEecc-
Confidence 37999999999998888643 322 3444443 233333322 244 2222 23333 22 1368999997653
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCcccee-eccccccCcCCCCCceEEEEEec
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWL-SEVEPRIDALSSSEERVLIAKKK 606 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~e~~l~~~k~ 606 (615)
.++..++-++-|+|+|||.+++-.....-++++.+.+ .|+... .... -+...+...+++++|+
T Consensus 142 -------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~---~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 142 -------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQ---VPALDGERHLVVIKAN 205 (207)
T ss_dssp -------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEE---CC--CCEEEEEEEEEC
T ss_pred -------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeec---cCCCCCceEEEEEEec
Confidence 2367899999999999999999977667778888777 666421 1001 1222345777887774
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.013 Score=57.57 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=83.8
Q ss_pred eeeeeeccccchhHHhhhcC-CCcEEEEeccCCC-CCchhHHhh----ccc--ccccccccccCCC---CCCccceeccc
Q 007165 460 FRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIYD----RGL--IGTVHDWCESFST---YPRTYDLLHAW 528 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~-~~vwvmnvvp~~~-~~tL~~iy~----RGl--iG~~hdwce~fst---YprtyDl~Ha~ 528 (615)
-..|+|+.+|-|.++..|.. .+.. .|+=++- +.-+.+.-+ .|+ |-+++.=.+.+.. .+.+||+|.+.
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHL--HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTC--EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 35899999999988777762 2222 3444443 233333322 244 4444433333432 35789999987
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcCh---hHHHHHHHHHhhcCccceee-ccccccCcCCCCCceEEEEE
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS---SIINYIRKFITALKWDGWLS-EVEPRIDALSSSEERVLIAK 604 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~---~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~e~~l~~~ 604 (615)
.+ .++..++-++-|+|+|||.+++-+.. +-+.++.+.+....++.... .+. -|...+...+++++
T Consensus 149 ~~--------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~~~~~~~~~l~~~~ 217 (240)
T 1xdz_A 149 AV--------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFK---LPIEESDRNIMVIR 217 (240)
T ss_dssp CC--------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEE---CTTTCCEEEEEEEE
T ss_pred cc--------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEe---cCCCCCceEEEEEE
Confidence 63 34789999999999999999987643 34556666777777765211 111 12222345677778
Q ss_pred eccCcc
Q 007165 605 KKLWDE 610 (615)
Q Consensus 605 k~~w~~ 610 (615)
|.=.++
T Consensus 218 k~~~~~ 223 (240)
T 1xdz_A 218 KIKNTP 223 (240)
T ss_dssp ECSCCC
T ss_pred ecCCCC
Confidence 875554
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0043 Score=57.72 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=51.6
Q ss_pred CCeEEEECCCCc-hHHHHHhc-C--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCC--CCceEEEecccc
Q 007165 216 IRNVLDVGCGVA-SFGAYLLS-H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS--RSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG-~~a~~L~~-~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd--~sFDlV~~s~~~ 289 (615)
..+|||||||.| ..+.+|++ . .|+++|+++..+. +.+.|+.+ |..+ ..||+|.+.+.
T Consensus 36 ~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~---------------~v~dDiF~-P~~~~Y~~~DLIYsirP- 98 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG---------------IVRDDITS-PRMEIYRGAALIYSIRP- 98 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT---------------EECCCSSS-CCHHHHTTEEEEEEESC-
T ss_pred CCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc---------------eEEccCCC-CcccccCCcCEEEEcCC-
Confidence 368999999999 69999986 4 4677777665443 56666654 3222 48999997663
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEE
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
.++....+.++.+-+ |.-++|.
T Consensus 99 ---P~El~~~i~~lA~~v--~adliI~ 120 (153)
T 2k4m_A 99 ---PAEIHSSLMRVADAV--GARLIIK 120 (153)
T ss_dssp ---CTTTHHHHHHHHHHH--TCEEEEE
T ss_pred ---CHHHHHHHHHHHHHc--CCCEEEE
Confidence 344555555555544 3455554
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0029 Score=58.22 Aligned_cols=108 Identities=7% Similarity=0.060 Sum_probs=76.5
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc--cc-ccccccccCCCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL--IG-TVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl--iG-~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
.+|+|+.+|.|.++.+|.. +.. +|+=++- ++-+...-++ |+ +- +-.|+.++++. .+||++.+++.
T Consensus 37 ~~vLdiG~G~G~~~~~l~~-~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~i~~~~~-- 109 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAK-RCK--FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK--LEFNKAFIGGT-- 109 (183)
T ss_dssp CEEEEESCCCSHHHHHHHT-TSS--EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG--CCCSEEEECSC--
T ss_pred CEEEEeCCCCCHHHHHHHh-cCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC--CCCcEEEECCc--
Confidence 4799999999999999987 332 3444442 2333333322 33 11 23355554443 58999999887
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEEc-ChhHHHHHHHHHhhcCcccee
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDGWL 583 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iird-~~~~~~~~~~~~~~~~w~~~~ 583 (615)
..+.+++-++-|+ |||.+++-+ ..+-+.++.+.++...|+++.
T Consensus 110 ------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 153 (183)
T 2yxd_A 110 ------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDA 153 (183)
T ss_dssp ------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred ------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEE
Confidence 3578899999998 999999987 777788999999988888753
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0039 Score=61.21 Aligned_cols=95 Identities=13% Similarity=0.175 Sum_probs=65.1
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc------ccccccccccccCCCCCCccceecccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR------GLIGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R------GliG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
.-.+|+|..+|-|.++..|.... .+|+-++- ++.+...-++ ++--+..|. +.++.-+.+||+|++..+|
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT-TSCCSCTTCEEEEEEESCG
T ss_pred CCCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhccCCceEEEEccc-ccCCCCCCCeeEEEECCch
Confidence 34689999999999999998763 24555553 3445444433 111122233 3333224689999999888
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
..+. +...++-||-|+|+|||.+++.
T Consensus 115 ~~~~----~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVP----DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCT----THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcC----CHHHHHHHHHHHCCCCcEEEEE
Confidence 7443 4788999999999999999985
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0054 Score=55.58 Aligned_cols=134 Identities=14% Similarity=0.134 Sum_probs=74.0
Q ss_pred eeeeeccccchhHHhhhcCC-----CcEEEEeccCCCCCchhHHhhcccccccccccccCC--------CCCCccceecc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFS--------TYPRTYDLLHA 527 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-----~vwvmnvvp~~~~~tL~~iy~RGliG~~hdwce~fs--------tYprtyDl~Ha 527 (615)
.+|+|+.+|-|+++.+|... .+..+-+-| . +.+ + .+--+..|..+. + .-+.+||+|.+
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~--~---~~~--~-~~~~~~~d~~~~-~~~~~~~~~~~~~~~D~i~~ 94 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP--M---DPI--V-GVDFLQGDFRDE-LVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC--C---CCC--T-TEEEEESCTTSH-HHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc--c---ccc--C-cEEEEEcccccc-hhhhhhhccCCCCceeEEEE
Confidence 48999999999999988643 234433333 1 111 1 111112233221 1 11378999999
Q ss_pred cccccccccCCC-C------hhhhhhhhcccccCCcEEEEEcC-hhHHHHHHHHHhhcCccceeeccccccCcCCCCCce
Q 007165 528 WKVFSEIEERGC-S------FEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDGWLSEVEPRIDALSSSEER 599 (615)
Q Consensus 528 ~~~fs~~~~~~c-~------~~~i~~EmdRilRp~g~~iird~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~ 599 (615)
+..+.......- . ...++-++-|+|+|||.+++... ..-...+.+.+.. .|+. +....+.. ......|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~-~~~~~~~~ 171 (180)
T 1ej0_A 95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTK-VKVRKPDS-SRARSREV 171 (180)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEE-EEEECCTT-SCTTCCEE
T ss_pred CCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhh-EEeecCCc-ccccCceE
Confidence 887762211000 0 16889999999999999999632 2223344444444 3654 12222111 12235788
Q ss_pred EEEEEec
Q 007165 600 VLIAKKK 606 (615)
Q Consensus 600 ~l~~~k~ 606 (615)
.++|++.
T Consensus 172 ~~~~~~~ 178 (180)
T 1ej0_A 172 YIVATGR 178 (180)
T ss_dssp EEEEEEE
T ss_pred EEEEccC
Confidence 8888763
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0034 Score=62.05 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=65.3
Q ss_pred CceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc--cc-ccccccccCCCCCCccceecccc
Q 007165 458 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL--IG-TVHDWCESFSTYPRTYDLLHAWK 529 (615)
Q Consensus 458 ~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl--iG-~~hdwce~fstYprtyDl~Ha~~ 529 (615)
..-.+|+|..+|-|.++.+|...-- .|+=+|- +.-|...-++ |+ +- +..|. +.++.-+.+||+|.+..
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~l~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQMPFTDERFHIVTCRI 111 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCCSCTTCEEEEEEES
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH-HhCCCCCCCEEEEEEhh
Confidence 3456899999999999999976532 5665553 3445443332 33 11 12232 22232237999999998
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 530 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 530 ~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
.+-.+. +...+|-||-|+|||||.+++.|
T Consensus 112 ~l~~~~----d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 112 AAHHFP----NPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp CGGGCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHhcC----CHHHHHHHHHHHcCCCCEEEEEE
Confidence 877442 47899999999999999999964
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0072 Score=60.11 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=80.9
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----ccc---ccccc-cccccCCCC-CCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL---IGTVH-DWCESFSTY-PRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGl---iG~~h-dwce~fstY-prtyDl~Ha~~~ 530 (615)
..|+|+.+|-|+++..|....-. +|+=++- +..+...-+ .|+ +-+++ |..+....+ +.+||+|-++--
T Consensus 51 ~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 51 GKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp CEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 57999999999999998876433 5666664 344433222 244 23333 333322223 579999999755
Q ss_pred cccc----------------ccCCCChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCccce
Q 007165 531 FSEI----------------EERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGW 582 (615)
Q Consensus 531 fs~~----------------~~~~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~~ 582 (615)
|... ....+.+.+++-++-|+|+|||.+++--..+.+.++...+....|+..
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~ 196 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPK 196 (259)
T ss_dssp C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEE
T ss_pred CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceE
Confidence 5321 011256788999999999999999997777788889999988888863
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0042 Score=58.60 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=82.9
Q ss_pred eeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHHhhc----cc---ccccccccccCC-CCCCccceeccccc
Q 007165 462 NVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFS-TYPRTYDLLHAWKV 530 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy~R----Gl---iG~~hdwce~fs-tYprtyDl~Ha~~~ 530 (615)
.|+|+.+|-|.++.+|... |-- +|+-++- ++.+...-++ |+ +-+.+.=.+.+. ..+.+||+|-++..
T Consensus 25 ~vLDlGcG~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 25 TVVDATCGNGNDTAFLASLVGENG--RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102 (197)
T ss_dssp EEEESCCTTSHHHHHHHHHHCTTC--EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence 7999999999999888654 221 4555554 3555544333 33 333333233343 34589999998765
Q ss_pred c-cc----cccCCCChhhhhhhhcccccCCcEEEEEcC------hhHHHHHHHHHhhcC---ccceeeccccccCcCCCC
Q 007165 531 F-SE----IEERGCSFEDLLIEMDRMLRPEGFVIIRDK------SSIINYIRKFITALK---WDGWLSEVEPRIDALSSS 596 (615)
Q Consensus 531 f-s~----~~~~~c~~~~i~~EmdRilRp~g~~iird~------~~~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~ 596 (615)
| .. .....-....++-|+-|+|+|||.+++-+- .+-.+.+.+.+..+. |++..... -.. ...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~--~~~--~~~ 178 (197)
T 3eey_A 103 YLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDF--INQ--ANC 178 (197)
T ss_dssp BCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEE--TTC--CSC
T ss_pred cccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEe--ccC--ccC
Confidence 4 10 000001234689999999999999998752 224556666666655 76532222 111 134
Q ss_pred CceEEEEEecc
Q 007165 597 EERVLIAKKKL 607 (615)
Q Consensus 597 ~e~~l~~~k~~ 607 (615)
+..++|.+|..
T Consensus 179 pp~~~~~~~~~ 189 (197)
T 3eey_A 179 PPILVCIEKIS 189 (197)
T ss_dssp CCEEEEEEECC
T ss_pred CCeEEEEEEcc
Confidence 56788888763
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0037 Score=62.00 Aligned_cols=96 Identities=26% Similarity=0.356 Sum_probs=64.1
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc----ccc---ccc-ccccccCCCCCCccceeccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GLI---GTV-HDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R----Gli---G~~-hdwce~fstYprtyDl~Ha~ 528 (615)
.-.+|+|..+|.|+++..|... .. +|+=++- +..+...-++ |+- -+. .|..+ ++.=+.+||+|.+.
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~ 136 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMD-LPFEDASFDAVWAL 136 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCTTCEEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc-CCCCCCCccEEEEe
Confidence 3458999999999999888653 32 4444443 2444443332 442 122 23322 22113799999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
++|..+. +...+|-|+-|+|+|||.++|.+
T Consensus 137 ~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 137 ESLHHMP----DRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp SCTTTSS----CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhhhCC----CHHHHHHHHHHHcCCCeEEEEEE
Confidence 9888543 36889999999999999999986
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.015 Score=53.39 Aligned_cols=113 Identities=11% Similarity=0.099 Sum_probs=77.1
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc----cc---ccccccccccCCCCCCccceecccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWK 529 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R----Gl---iG~~hdwce~fstYprtyDl~Ha~~ 529 (615)
.-..|+|+.+|.|.++..|... |. .+|+=++- +..+...-++ |+ +=+..|..+.|+..+.+||+|.+++
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 102 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTPQ--TTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGG 102 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTSSS--EEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHHCCC--CeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECC
Confidence 3457999999999999988765 32 23444443 2444443332 33 2223355566666558999999887
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEEcC-hhHHHHHHHHHhhcCccc
Q 007165 530 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDG 581 (615)
Q Consensus 530 ~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~-~~~~~~~~~~~~~~~w~~ 581 (615)
.+.. ..++-++-|+|+|||.+++-+. .+-...+..++....++.
T Consensus 103 ~~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~ 147 (178)
T 3hm2_A 103 GLTA--------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTI 147 (178)
T ss_dssp -TTC--------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEE
T ss_pred cccH--------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCee
Confidence 7752 6789999999999999999764 455667777777776665
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.005 Score=61.20 Aligned_cols=96 Identities=16% Similarity=0.244 Sum_probs=64.1
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcccccccccccccCCCCCCccceecccccccccccC
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER 537 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~~ 537 (615)
.-..|+|..+|-|.++..|.+... +|+=+|- +.-+...-.+.-+-..+.=.+.++.-+.+||+||+.+++..+
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--- 107 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHF--- 107 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGC---
T ss_pred CCCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhc---
Confidence 346899999999999999987543 3444442 222222222222222333334455335899999999988755
Q ss_pred CCChhhhhhhhcccccCCcEEEEEc
Q 007165 538 GCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 538 ~c~~~~i~~EmdRilRp~g~~iird 562 (615)
-+...++-|+-|+|| ||+++|-+
T Consensus 108 -~~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 108 -SHLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp -SSHHHHHHHHHHHBC-SSCEEEEE
T ss_pred -cCHHHHHHHHHHHhC-CcEEEEEE
Confidence 247899999999999 99887764
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0022 Score=62.93 Aligned_cols=93 Identities=14% Similarity=0.185 Sum_probs=62.4
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhh----ccc---ccc-cccccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGL---IGT-VHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~----RGl---iG~-~hdwce~fstYprtyDl~Ha~~~ 530 (615)
.+|+|+.+|.|.++.+|... .. +|+=++- +.-|...-+ .|+ +-+ -.|+.+ ++. +.+||+|.+.++
T Consensus 38 ~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~V~~~~~ 112 (256)
T 1nkv_A 38 TRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-YVA-NEKCDVAACVGA 112 (256)
T ss_dssp CEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-CCC-SSCEEEEEEESC
T ss_pred CEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh-CCc-CCCCCEEEECCC
Confidence 47999999999999888643 22 3444443 344444322 343 222 223332 232 789999999877
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+-.+. +...+|-||-|+|||||.+++.|
T Consensus 113 ~~~~~----~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 113 TWIAG----GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp GGGTS----SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred hHhcC----CHHHHHHHHHHHcCCCeEEEEec
Confidence 76332 47899999999999999999975
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0045 Score=66.00 Aligned_cols=104 Identities=10% Similarity=0.012 Sum_probs=67.2
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC-------------CCcEEEEecCCCC----CCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-------------IPSTLGVLGTKRL----PYPS 277 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg-------------~~~~~~v~d~~~L----pfpd 277 (615)
++++||=||.|.|..++.+++.... .+.-.++.+..++.|++.- ..+.+...|+... .-..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~--~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPK--MVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCS--EEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCc--eeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 3579999999999999999876432 3344467778888887642 1245666664321 1124
Q ss_pred CCceEEEecccccccccc---------hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 278 RSFELAHCSRCRIDWLQR---------DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d---------~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++||+|+.-...-....+ ...+++.+.++|+|||.++......
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~ 334 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV 334 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEET
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 679999953210000011 1357889999999999999865333
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0037 Score=63.00 Aligned_cols=100 Identities=11% Similarity=0.081 Sum_probs=65.5
Q ss_pred CceeeeeeccccchhHHhhhcCC-C-cEEEEeccCCC-CCchhHHhhc----cc-ccccccccccCCCCCCccceecccc
Q 007165 458 NTFRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIYDR----GL-IGTVHDWCESFSTYPRTYDLLHAWK 529 (615)
Q Consensus 458 ~~~Rnvmdm~a~~ggfaaal~~~-~-vwvmnvvp~~~-~~tL~~iy~R----Gl-iG~~hdwce~fstYprtyDl~Ha~~ 529 (615)
..-.+|+|+.+|.|.++..|.+. | -. +|+=+|- +..+...-++ |+ +-..+.=.+.++ +|.+||+||+..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~ 97 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS--KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-LNDKYDIAICHA 97 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTC--EEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-CSSCEEEEEEES
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC-cCCCeeEEEECC
Confidence 34568999999999999999865 2 11 2333332 2233222221 21 122222233333 478999999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 530 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 530 ~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
++..+. +...++-|+-|+|+|||++++.+..
T Consensus 98 ~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 98 FLLHMT----TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CGGGCS----SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcCC----CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 888543 4689999999999999999988754
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.009 Score=55.66 Aligned_cols=118 Identities=13% Similarity=0.078 Sum_probs=71.5
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----ccc--ccccccccccCCCC-CCccceeccc-ccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL--IGTVHDWCESFSTY-PRTYDLLHAW-KVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGl--iG~~hdwce~fstY-prtyDl~Ha~-~~f 531 (615)
..|+|+.+|-|.++..|.+. .-+|+=+|- +.-|...-+ .|+ +-+.++-.+.+..+ +.+||++..+ +.+
T Consensus 24 ~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL 100 (185)
T ss_dssp CEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred CEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence 36999999999999999877 234555553 344444322 344 44555555654323 5789999765 333
Q ss_pred cc----cccCCCChhhhhhhhcccccCCcEEEEEcC------hhHHHHHHHHHhhcC---ccc
Q 007165 532 SE----IEERGCSFEDLLIEMDRMLRPEGFVIIRDK------SSIINYIRKFITALK---WDG 581 (615)
Q Consensus 532 s~----~~~~~c~~~~i~~EmdRilRp~g~~iird~------~~~~~~~~~~~~~~~---w~~ 581 (615)
.. +....-.....+-|+-|+|+|||.+++-.- .+-.+.+.+.+..+. |.+
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (185)
T 3mti_A 101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTA 163 (185)
T ss_dssp ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEE
T ss_pred CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEE
Confidence 21 000101234677899999999999988632 233455666666655 665
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0028 Score=61.25 Aligned_cols=118 Identities=10% Similarity=0.129 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhccc-ccccccccccC
Q 007165 438 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESF 515 (615)
Q Consensus 438 ~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGl-iG~~hdwce~f 515 (615)
..|....+.+...+...+ ..-..|+|+.+|.|.++..|...-. +|+-++- +..+...-++.- +-..+.=.+.+
T Consensus 21 ~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~ 95 (239)
T 3bxo_A 21 KDYAAEASDIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDF 95 (239)
T ss_dssp CCHHHHHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTC
T ss_pred hhHHHHHHHHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHc
Confidence 456666655555554323 2346899999999999999875421 4555553 355555444410 22222112233
Q ss_pred CCCCCccceec-ccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 516 STYPRTYDLLH-AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 516 stYprtyDl~H-a~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+. +.+||+|. +.++|..+.. .-+...+|-++-|+|+|||.+++.+
T Consensus 96 ~~-~~~~D~v~~~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 96 RL-GRKFSAVVSMFSSVGYLKT-TEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CC-SSCEEEEEECTTGGGGCCS-HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred cc-CCCCcEEEEcCchHhhcCC-HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 33 78999999 4556664421 1246789999999999999999974
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0019 Score=64.92 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=67.6
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc---ccccccccccCC-CCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFS-TYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl---iG~~hdwce~fs-tYprtyDl~Ha~~~f 531 (615)
..|+|..+|.|.++..|..... +|+-++- +..|...-++ |+ +-+++.=.+.++ .-+.+||+|.+.+++
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 4799999999999999987633 4555553 3555554443 43 222332223333 335899999999998
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
..+. +...+|-|+-|+|+|||.++|.+.
T Consensus 147 ~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 147 EWVA----DPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp GGCS----CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hccc----CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 8553 468899999999999999999763
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.005 Score=61.67 Aligned_cols=111 Identities=12% Similarity=0.148 Sum_probs=71.6
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc--ccccccccccccCCCCCCccceeccccccccccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR--GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 536 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R--GliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~ 536 (615)
-.+|+|..+|-|.++.+|..... +|+=++- +.-+...-++ ++-=...|. +.++ ++.+||+|++..+|..+.
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~- 131 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADA-RNFR-VDKPLDAVFSNAMLHWVK- 131 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCT-TTCC-CSSCEEEEEEESCGGGCS-
T ss_pred CCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECCh-hhCC-cCCCcCEEEEcchhhhCc-
Confidence 35899999999999999987332 4444443 3444444333 111112222 3344 478999999999887443
Q ss_pred CCCChhhhhhhhcccccCCcEEEEEcC-----hhHHHHHHHHHhhcCc
Q 007165 537 RGCSFEDLLIEMDRMLRPEGFVIIRDK-----SSIINYIRKFITALKW 579 (615)
Q Consensus 537 ~~c~~~~i~~EmdRilRp~g~~iird~-----~~~~~~~~~~~~~~~w 579 (615)
+...+|-|+-|+|||||.+++... ......+..++....|
T Consensus 132 ---d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (279)
T 3ccf_A 132 ---EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGI 176 (279)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTC
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCC
Confidence 478899999999999999999632 2344444444444444
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.022 Score=58.68 Aligned_cols=100 Identities=17% Similarity=0.249 Sum_probs=62.3
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCC-cEEEEe-cCCCCCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLGVL-GTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~-d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
..+||||||++|.|+.+.+.. .|.|+|+-..+..+.+. .+..+-+ +.+... |+..++- ..+|+|+|-- +
T Consensus 95 ~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~--~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDi-g 169 (321)
T 3lkz_A 95 VGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQL--VQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDI-G 169 (321)
T ss_dssp CEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCC--CCBTTGGGEEEECSCCTTSSCC--CCCSEEEECC-C
T ss_pred CCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcch--hhhcCCcceEEEeccCHhhCCC--CCCCEEEEEC-c
Confidence 358999999999999988754 57778776653211100 0011211 445444 5555553 6699999854 2
Q ss_pred cccccch----H---HHHHHHHhccCCC-eEEEEEcCCCC
Q 007165 290 IDWLQRD----G---ILLLELDRLLRPG-GYFVYSSPEAY 321 (615)
Q Consensus 290 l~~~~d~----~---~~L~ei~RvLkPG-G~Lvis~P~~~ 321 (615)
+-.+++ . ++|.-+.+.|++| |-|++-+-..|
T Consensus 170 -eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY 208 (321)
T 3lkz_A 170 -ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY 208 (321)
T ss_dssp -CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred -cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC
Confidence 333332 1 2566667889999 99998776655
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0081 Score=60.31 Aligned_cols=135 Identities=12% Similarity=0.227 Sum_probs=88.3
Q ss_pred eeeeeccccchhHHhhhcC-CCcEEEEeccCCC-CCchhHHhhc----cc--cc-ccccccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIYDR----GL--IG-TVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~-~~vwvmnvvp~~~-~~tL~~iy~R----Gl--iG-~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
.+|+|+.+|-|.++.+|.. .|.+ +|+=++- +..|.+.-++ |+ +- +-.|+.+++. +.+||+|-++--|
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npPy 186 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERPDC--EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPPY 186 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTS--EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCCC
T ss_pred CEEEEecCCccHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCCC
Confidence 4799999999999998873 2332 4555553 3455544333 33 22 2346666654 5789999988444
Q ss_pred cccc------------cCC---------CChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCccceeecccccc
Q 007165 532 SEIE------------ERG---------CSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRI 590 (615)
Q Consensus 532 s~~~------------~~~---------c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 590 (615)
.... .+. -.+..++-++-|.|+|||++++-....-.+++++++....|+.. ... .
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v-~~~---~ 262 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDV-ETC---R 262 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTC-CEE---E
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEE-EEE---e
Confidence 3110 000 12467888999999999999998777777888888888888641 111 1
Q ss_pred CcCCCCCceEEEEEe
Q 007165 591 DALSSSEERVLIAKK 605 (615)
Q Consensus 591 ~~~~~~~e~~l~~~k 605 (615)
...+.+++++++|
T Consensus 263 --d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 263 --DYGDNERVTLGRY 275 (276)
T ss_dssp --CTTSSEEEEEEEC
T ss_pred --cCCCCCcEEEEEE
Confidence 1246789999875
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0085 Score=57.89 Aligned_cols=138 Identities=14% Similarity=0.083 Sum_probs=83.8
Q ss_pred eeeeecccc-chhHHhhhcCCCcEEEEeccCCC-CCchhHHh----hccc-ccccccccccCCCCC-Cccceeccccccc
Q 007165 461 RNVMDMNSN-LGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGL-IGTVHDWCESFSTYP-RTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~-~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy----~RGl-iG~~hdwce~fstYp-rtyDl~Ha~~~fs 532 (615)
.+|+|+.+| -|.++.+|.... .-+|+-++- +..+...- ..|+ +-+++.=.+.+..+| .+||+|-++--|.
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~ 134 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYY 134 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC
T ss_pred CEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCc
Confidence 579999999 999988886542 224555553 24444332 2243 223332112234444 8999999886554
Q ss_pred cccc---------------CCCChhhhhhhhcccccCCcEEEE--EcChhHHHHHHHHHhhcCccceeeccccccCcCCC
Q 007165 533 EIEE---------------RGCSFEDLLIEMDRMLRPEGFVII--RDKSSIINYIRKFITALKWDGWLSEVEPRIDALSS 595 (615)
Q Consensus 533 ~~~~---------------~~c~~~~i~~EmdRilRp~g~~ii--rd~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 595 (615)
.... ....+..++-++-|+|+|||.+++ -...+...++.+.+....|+...... ..+ .
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~--~~g---~ 209 (230)
T 3evz_A 135 DKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKF--KVG---T 209 (230)
T ss_dssp ---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEE--CCC---C
T ss_pred CCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEe--cCC---C
Confidence 2111 001137789999999999999988 44557788999999999998743322 221 2
Q ss_pred CCceEEEEEe
Q 007165 596 SEERVLIAKK 605 (615)
Q Consensus 596 ~~e~~l~~~k 605 (615)
..-.+|+.+|
T Consensus 210 ~~~~~l~f~~ 219 (230)
T 3evz_A 210 RWRHSLIFFK 219 (230)
T ss_dssp -CEEEEEEEC
T ss_pred eEEEEEEEec
Confidence 2345666655
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0032 Score=63.44 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=61.5
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhhcccccccccccccCCCCCCccceecccccccccccCCC
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGC 539 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~~~c 539 (615)
..|+|..+|-|.++..|...-- +|+-+|-. +-|...-.+.=|-..+-=.|.++-=+.+||||.+...|.. .
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~-----~ 112 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHW-----F 112 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTT-----C
T ss_pred CCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhH-----h
Confidence 3699999999999999986532 44444422 2222221221122222223444444589999999888752 3
Q ss_pred ChhhhhhhhcccccCCcEEEEE
Q 007165 540 SFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 540 ~~~~i~~EmdRilRp~g~~iir 561 (615)
+....+-|+-|+|||||.+++-
T Consensus 113 ~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 113 DLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCCEEEEE
Confidence 5778999999999999998774
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.004 Score=61.12 Aligned_cols=100 Identities=15% Similarity=0.209 Sum_probs=68.0
Q ss_pred ccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhccc---cc-ccccccccCCCCCCccceecccc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL---IG-TVHDWCESFSTYPRTYDLLHAWK 529 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGl---iG-~~hdwce~fstYprtyDl~Ha~~ 529 (615)
+....=..|+|..+|.|.++.+|.....- +|+-++- +.-+...-++.- +- +..|. +.++.-..+||+|.+.+
T Consensus 40 ~~~~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~ 116 (253)
T 3g5l_A 40 LPDFNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAI-EDIAIEPDAYNVVLSSL 116 (253)
T ss_dssp CCCCTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCG-GGCCCCTTCEEEEEEES
T ss_pred hhccCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcch-hhCCCCCCCeEEEEEch
Confidence 44334568999999999999999765321 4555553 344444444421 11 12222 33443358999999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 530 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 530 ~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
+|..+. +...+|-|+-|+|+|||.++|.
T Consensus 117 ~l~~~~----~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 117 ALHYIA----SFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp CGGGCS----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhh----hHHHHHHHHHHHcCCCcEEEEE
Confidence 888552 4789999999999999999996
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0061 Score=60.43 Aligned_cols=99 Identities=18% Similarity=0.289 Sum_probs=65.4
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcccccccccccccCCCCCCccceecccccccccccC
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER 537 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~~ 537 (615)
.-.+|+|..+|-|.++..|..... +|+=++- +..+...-++..--..+.=.+.++.-+.+||+|-+.+.+-.+..
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~- 129 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE- 129 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS-
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhccc-
Confidence 345899999999999999987642 4555553 35555555554310111112223322468999998764432323
Q ss_pred CCChhhhhhhhcccccCCcEEEEEcC
Q 007165 538 GCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 538 ~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
+...+|-||-|+|+|||.+++...
T Consensus 130 --~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 130 --NKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --cHHHHHHHHHHHcCCCeEEEEEeC
Confidence 288999999999999999999743
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.019 Score=56.83 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=82.7
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCC-CCCchhHHhhcc-ccc-----cccccc-ccCCCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVR-MSARLKIIYDRG-LIG-----TVHDWC-ESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~-~~~tL~~iy~RG-liG-----~~hdwc-e~fstYprtyDl~Ha~~~fs 532 (615)
..|+|..+|-|+|+..|.....- .|+=+| +++-|.....+. -++ -....+ +.++. .-+|..-.+-+|+
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v~~ 114 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVSFI 114 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCSSS
T ss_pred CEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEEhh
Confidence 46999999999999888766422 455555 245555422211 011 111122 33332 0246666666676
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEE-------------------cC---hhHHHHHHHHHhhcCccceeecccccc
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIR-------------------DK---SSIINYIRKFITALKWDGWLSEVEPRI 590 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iir-------------------d~---~~~~~~~~~~~~~~~w~~~~~~~~~~~ 590 (615)
. +..+|-|+-|+|+|||.+++- |. ...++++..++....|++......+-.
T Consensus 115 ~-------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~ 187 (232)
T 3opn_A 115 S-------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIK 187 (232)
T ss_dssp C-------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSC
T ss_pred h-------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCC
Confidence 3 478999999999999999874 11 135678888898888987443333333
Q ss_pred CcCCCCCceEEEEEec
Q 007165 591 DALSSSEERVLIAKKK 606 (615)
Q Consensus 591 ~~~~~~~e~~l~~~k~ 606 (615)
++. .+-|-++.++|.
T Consensus 188 g~~-gn~e~l~~~~~~ 202 (232)
T 3opn_A 188 GGA-GNVEFLVHLLKD 202 (232)
T ss_dssp BTT-TBCCEEEEEEES
T ss_pred CCC-CCHHHHHHHhhc
Confidence 332 346778888774
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0037 Score=63.33 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=63.0
Q ss_pred ceeeeeeccccchhHHhhhc---CCCcEEEEeccCCC-CCchhHHhhc-----ccc---cccccccccCCCCC------C
Q 007165 459 TFRNVMDMNSNLGGFAAALK---DKDVWVMNVAPVRM-SARLKIIYDR-----GLI---GTVHDWCESFSTYP------R 520 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~---~~~vwvmnvvp~~~-~~tL~~iy~R-----Gli---G~~hdwce~fstYp------r 520 (615)
.-..|+|+.+|.|.++..|. .... +|+=+|- +..+...-++ |+. -..+.=.+.++.-. .
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 112 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFE---QIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQ 112 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCS---EEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCC
Confidence 45789999999999999998 3332 4444543 3444444333 221 11221122222111 6
Q ss_pred ccceecccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 007165 521 TYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 521 tyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
+||+|++..++..+ +...++-|+-|+|||||.++|
T Consensus 113 ~fD~V~~~~~l~~~-----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 113 KIDMITAVECAHWF-----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp CEEEEEEESCGGGS-----CHHHHHHHHHHHEEEEEEEEE
T ss_pred CeeEEeHhhHHHHh-----CHHHHHHHHHHhcCCCcEEEE
Confidence 99999999988754 689999999999999999998
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0046 Score=59.89 Aligned_cols=98 Identities=14% Similarity=0.171 Sum_probs=65.3
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhccc---ccccccccccCCCCCCccceeccccccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL---IGTVHDWCESFSTYPRTYDLLHAWKVFSEI 534 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGl---iG~~hdwce~fstYprtyDl~Ha~~~fs~~ 534 (615)
.-.+|+|..+|.|.++..|.....- +|+=++- +..+...-++.- +-..+.-.+.++.-+.+||+|.+..++..+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 120 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYV 120 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecccccc
Confidence 3468999999999999999765321 3333442 244444433321 122222223344335799999999988754
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
. +...+|-|+-|+|+|||.++|.+
T Consensus 121 ~----~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 121 E----DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp S----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c----hHHHHHHHHHHhcCcCcEEEEEe
Confidence 3 47899999999999999999965
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0069 Score=55.99 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=76.5
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----ccc---cc-ccccccccCCCCCCccceeccccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL---IG-TVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGl---iG-~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
-.+|+|+.+|.|.++..|...- -+|+=++. +..+...-+ .|+ +- .-.|+.+.++.. .+||+|-+++.
T Consensus 34 ~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~ 109 (192)
T 1l3i_A 34 NDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-PDIDIAVVGGS 109 (192)
T ss_dssp TCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-CCEEEEEESCC
T ss_pred CCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-CCCCEEEECCc
Confidence 3589999999999998887654 34555543 233433322 232 11 223444434332 38999998876
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEc-ChhHHHHHHHHHhhcCccce
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDGW 582 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird-~~~~~~~~~~~~~~~~w~~~ 582 (615)
+. .+..++-++-|+|+|||.+++-+ ..+...++.+++....|++.
T Consensus 110 ~~-------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 110 GG-------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (192)
T ss_dssp TT-------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred hH-------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceE
Confidence 64 36889999999999999999975 45667888888888777654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0077 Score=57.68 Aligned_cols=98 Identities=21% Similarity=0.300 Sum_probs=63.2
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----c--cccccccccccCCCCCCccceeccccccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----G--LIGTVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----G--liG~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
-.+|+|..+|-|.++.+|..... +|+-++- +..+...-++ | +-=+..|..+ ++.-+.+||+|.++..+.
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK-LSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS-CCSCTTCEEEEEEESCGG
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc-CCCCCCcEEEEEEcCchH
Confidence 45899999999999998875532 5555553 3444443332 1 1112233333 222246999999998843
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
.... -+...++-++-|+|+|||.+++-+.
T Consensus 115 ~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 115 HFEP--LELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp GCCH--HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCCH--HHHHHHHHHHHHHcCCCcEEEEEec
Confidence 2111 1367899999999999999999764
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0073 Score=64.05 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=63.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcC-------CCcEEEEecCCCCC-CCCCCceE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-------IPSTLGVLGTKRLP-YPSRSFEL 282 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg-------~~~~~~v~d~~~Lp-fpd~sFDl 282 (615)
++.+|||+++|.|.=+.+|++. .|++.|++..-+... .+.++..+ .++.+...|...++ ...+.||.
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l-~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~ 226 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARL-QKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDR 226 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHH-HHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEE
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHH-HHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCE
Confidence 4578999999999888887754 355555544322111 12222222 24666777766554 34578999
Q ss_pred EEe----ccc---ccc------cc--cc--------hHHHHHHHHhccCCCeEEEEEcCC
Q 007165 283 AHC----SRC---RID------WL--QR--------DGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 283 V~~----s~~---~l~------~~--~d--------~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|++ +.. .+. |. +. ...+|..+.+.|||||+++.++=.
T Consensus 227 VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 227 VLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp EEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred EEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 985 221 111 11 00 134788899999999999998733
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0065 Score=57.77 Aligned_cols=112 Identities=12% Similarity=0.077 Sum_probs=75.8
Q ss_pred eeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc----cc--ccc-cccccccCCCCCCccceeccccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GL--IGT-VHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R----Gl--iG~-~hdwce~fstYprtyDl~Ha~~~ 530 (615)
-..|+|+.+|.|.++.+|... |.. +|+=++- +..+...-++ |+ +-+ ..|..+.+... .+||++-+++.
T Consensus 41 ~~~vLDiG~G~G~~~~~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~D~i~~~~~ 117 (204)
T 3e05_A 41 DLVMWDIGAGSASVSIEASNLMPNG--RIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDL-PDPDRVFIGGS 117 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHHCTTS--EEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTS-CCCSEEEESCC
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcC-CCCCEEEECCC
Confidence 357999999999999888644 211 3444443 3444443332 33 212 23444444332 57999988775
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEcC-hhHHHHHHHHHhhcCccc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDG 581 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~-~~~~~~~~~~~~~~~w~~ 581 (615)
+. .+..++-|+-|+|+|||.+++-+. .+-.+++.++++...|++
T Consensus 118 ~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~ 162 (204)
T 3e05_A 118 GG-------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMV 162 (204)
T ss_dssp TT-------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEE
T ss_pred Cc-------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCce
Confidence 54 578899999999999999999854 467888888888888864
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.006 Score=58.53 Aligned_cols=98 Identities=15% Similarity=0.294 Sum_probs=64.6
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----ccc-------ccccccccccCCCCCCccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL-------IGTVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGl-------iG~~hdwce~fstYprtyDl~Ha~ 528 (615)
..|+|+.+|.|.++.+|..... +|+-++- +..+...-+ .|+ +-....=.+.++.-+.+||+|-+.
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 4799999999999999987632 5555553 344444433 233 222222223333335799999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+++..+... -....+|-|+-|+|||||.+++.+
T Consensus 109 ~~l~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 109 AFLTSVPDP-KERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp SCGGGCCCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcCCCH-HHHHHHHHHHHHHcCCCeEEEEEE
Confidence 888754321 113379999999999999999975
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0081 Score=58.86 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=64.3
Q ss_pred CceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhccc-ccccccccccCCCCCCccceeccccccccc
Q 007165 458 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFSEI 534 (615)
Q Consensus 458 ~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~RGl-iG~~hdwce~fstYprtyDl~Ha~~~fs~~ 534 (615)
..-.+|+|+.+|.|.++.+|... |.. +|+=++- ++.+...-++.- +-..+.-.+.++ -+.+||+|++..+|..+
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 108 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVN--VITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWV 108 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTT--SEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGS
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhC
Confidence 34468999999999999888643 111 2333332 244444444310 111222223344 46799999999988754
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
. +...+|-||-|+|+|||.+++..
T Consensus 109 ~----~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 109 P----DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp T----THHHHHHHHGGGEEEEEEEEEEE
T ss_pred C----CHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 47889999999999999999974
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0078 Score=58.92 Aligned_cols=93 Identities=13% Similarity=0.275 Sum_probs=60.9
Q ss_pred eeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhh----ccc---cccc-ccccccCC-CCCCccceeccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGL---IGTV-HDWCESFS-TYPRTYDLLHAW 528 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~----RGl---iG~~-hdwce~fs-tYprtyDl~Ha~ 528 (615)
-++|+|+.+|.|.++.+|... | .-.|+-++- +..+...-+ .|+ |-+. .|..+..+ ..+.+||+|..+
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISD--DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCT--TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 468999999999999999862 2 234555553 344443322 243 2222 23334333 346899999866
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.-.. ....++-++-|.|||||.+|+.
T Consensus 150 ~~~~-------~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 150 AAKA-------QSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp TTSS-------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred CcHH-------HHHHHHHHHHHhcCCCeEEEEe
Confidence 5322 3677888999999999999993
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0079 Score=56.75 Aligned_cols=157 Identities=11% Similarity=0.103 Sum_probs=87.0
Q ss_pred hHhhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhh----ccc--ccc
Q 007165 436 DIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGL--IGT 507 (615)
Q Consensus 436 d~~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~----RGl--iG~ 507 (615)
+++.|.+.+-.+ +. ....=..|+|+.+|-|.++.+|... +-+ +|+-++- +..+...-+ .|+ -=+
T Consensus 13 ~~~~~~~~~~~~---l~---~~~~~~~vLDiG~G~G~~~~~l~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 84 (215)
T 4dzr_A 13 DTEVLVEEAIRF---LK---RMPSGTRVIDVGTGSGCIAVSIALACPGV--SVTAVDLSMDALAVARRNAERFGAVVDWA 84 (215)
T ss_dssp HHHHHHHHHHHH---HT---TCCTTEEEEEEESSBCHHHHHHHHHCTTE--EEEEEECC-------------------CC
T ss_pred cHHHHHHHHHHH---hh---hcCCCCEEEEecCCHhHHHHHHHHhCCCC--eEEEEECCHHHHHHHHHHHHHhCCceEEE
Confidence 455665555433 22 1123357999999999999888654 221 3333332 222222111 121 122
Q ss_pred cccccccCCC---CCCccceecccccccccc------cC------CCC----------hhhhhhhhcccccCCcE-EEEE
Q 007165 508 VHDWCESFST---YPRTYDLLHAWKVFSEIE------ER------GCS----------FEDLLIEMDRMLRPEGF-VIIR 561 (615)
Q Consensus 508 ~hdwce~fst---YprtyDl~Ha~~~fs~~~------~~------~c~----------~~~i~~EmdRilRp~g~-~iir 561 (615)
-.|..++|.. .+.+||+|-++--|.... .. ... +..++-++-|+|+|||. +++-
T Consensus 85 ~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 85 AADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp HHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred EcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3455554442 347999999975543110 00 011 17889999999999999 7776
Q ss_pred cChhHHHHHHHHHh--hcCccceeeccccccCcCCCCCceEEEEEec
Q 007165 562 DKSSIINYIRKFIT--ALKWDGWLSEVEPRIDALSSSEERVLIAKKK 606 (615)
Q Consensus 562 d~~~~~~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~e~~l~~~k~ 606 (615)
-...-.+++.+++. .-.|.. +... .+ ..+.+++++++|+
T Consensus 165 ~~~~~~~~~~~~l~~~~~gf~~-~~~~--~~---~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 165 VGHNQADEVARLFAPWRERGFR-VRKV--KD---LRGIDRVIAVTRE 205 (215)
T ss_dssp CTTSCHHHHHHHTGGGGGGTEE-CCEE--EC---TTSCEEEEEEEEC
T ss_pred ECCccHHHHHHHHHHhhcCCce-EEEE--Ee---cCCCEEEEEEEEc
Confidence 55566778888888 666653 1111 11 2356899999875
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0042 Score=62.91 Aligned_cols=97 Identities=10% Similarity=0.206 Sum_probs=59.4
Q ss_pred eeeeeccccchhHHhh----hcC-CCcEEEEeccCCC-CCchhHHhhc-----ccccccccc----cccCC-----CC-C
Q 007165 461 RNVMDMNSNLGGFAAA----LKD-KDVWVMNVAPVRM-SARLKIIYDR-----GLIGTVHDW----CESFS-----TY-P 519 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaa----l~~-~~vwvmnvvp~~~-~~tL~~iy~R-----GliG~~hdw----ce~fs-----tY-p 519 (615)
..|+|..+|-|.++.. |.. .|-+...++=++. ++-|...-+| |+-.+--.| .|.+. .+ +
T Consensus 54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (292)
T 2aot_A 54 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKEL 133 (292)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCC
T ss_pred CeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCC
Confidence 4799999999986543 322 1322223344443 3445444333 321111111 12221 01 4
Q ss_pred CccceecccccccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 520 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 520 rtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.+||+|++..++-.+. +....|-||-|+|+|||.++|-
T Consensus 134 ~~fD~V~~~~~l~~~~----d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 134 QKWDFIHMIQMLYYVK----DIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp CCEEEEEEESCGGGCS----CHHHHHHHHHHTEEEEEEEEEE
T ss_pred CceeEEEEeeeeeecC----CHHHHHHHHHHHcCCCcEEEEE
Confidence 7899999999888543 3788999999999999999985
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.016 Score=57.81 Aligned_cols=163 Identities=12% Similarity=0.035 Sum_probs=92.8
Q ss_pred hHhhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCC-CchhHH----hhccc--ccc
Q 007165 436 DIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKII----YDRGL--IGT 507 (615)
Q Consensus 436 d~~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-~tL~~i----y~RGl--iG~ 507 (615)
..+.|.+++-.-...+. .+....-.+|+|+.+|-|.++.+|... |-+ .|+=+|.. .-+.+. -.-|+ |=+
T Consensus 58 ~~~~~~~~~~ds~~~l~-~~~~~~~~~vLDiG~G~G~~~i~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~l~~v~~ 134 (249)
T 3g89_A 58 EEEVVVKHFLDSLTLLR-LPLWQGPLRVLDLGTGAGFPGLPLKIVRPEL--ELVLVDATRKKVAFVERAIEVLGLKGARA 134 (249)
T ss_dssp HHHHHHHHHHHHHGGGG-SSCCCSSCEEEEETCTTTTTHHHHHHHCTTC--EEEEEESCHHHHHHHHHHHHHHTCSSEEE
T ss_pred HHHHhhceeeechhhhc-ccccCCCCEEEEEcCCCCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHhCCCceEE
Confidence 34667655433222222 122223457999999999887766532 332 23344432 333332 22355 344
Q ss_pred cccccccCC---CCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcC---hhHHHHHHHHHhhcCccc
Q 007165 508 VHDWCESFS---TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK---SSIINYIRKFITALKWDG 581 (615)
Q Consensus 508 ~hdwce~fs---tYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~---~~~~~~~~~~~~~~~w~~ 581 (615)
+|.--|.+. .+..+||+|-+..+ .++..++-++-|+|+|||.+++-.. .+-+.++++.++.+.|+.
T Consensus 135 ~~~d~~~~~~~~~~~~~fD~I~s~a~--------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~ 206 (249)
T 3g89_A 135 LWGRAEVLAREAGHREAYARAVARAV--------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRL 206 (249)
T ss_dssp EECCHHHHTTSTTTTTCEEEEEEESS--------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEE
T ss_pred EECcHHHhhcccccCCCceEEEECCc--------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeE
Confidence 444445444 35579999987653 2477889999999999998887543 455666777777778875
Q ss_pred eeeccccccCcCCCCCceEEEEEeccCccc
Q 007165 582 WLSEVEPRIDALSSSEERVLIAKKKLWDEE 611 (615)
Q Consensus 582 ~~~~~~~~~~~~~~~~e~~l~~~k~~w~~~ 611 (615)
.. ..+- .-|.....-.+++.+|.=.++.
T Consensus 207 ~~-~~~~-~~p~~~~~R~l~~~~k~~~t~~ 234 (249)
T 3g89_A 207 GE-VLAL-QLPLSGEARHLVVLEKTAPTPP 234 (249)
T ss_dssp EE-EEEE-ECTTTCCEEEEEEEEECSCCCT
T ss_pred EE-EEEe-eCCCCCCcEEEEEEEeCCCCCC
Confidence 21 1111 1122223445667777655553
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0096 Score=62.37 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=63.0
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCCCchhH----Hhhccc---ccccccccccCCCCC-Cccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI----IYDRGL---IGTVHDWCESFSTYP-RTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~~tL~~----iy~RGl---iG~~hdwce~fstYp-rtyDl~Ha~~~fs 532 (615)
..|+|+.+|-|.++..|.+.+.. .|+=++...-+.. +-..|+ |-+.+.-.+.+ .+| .+||+|.+..+..
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~~--~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWMGY 144 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTCS--EEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCCBB
T ss_pred CEEEEEeccchHHHHHHHHCCCC--EEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEEEEEccccc
Confidence 57999999999999888766431 3333443322322 334455 33444333444 345 8999999976544
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.+.. .-.+..++-+++|+|+|||.+|..
T Consensus 145 ~l~~-~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 145 CLFY-ESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp TBTB-TCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccC-chhHHHHHHHHHHhCCCCCEEccc
Confidence 3321 235788899999999999998743
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0035 Score=60.68 Aligned_cols=96 Identities=20% Similarity=0.340 Sum_probs=62.0
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc----cccccc-ccccccCCCCCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GLIGTV-HDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R----GliG~~-hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
..|+|..+|.|.++.+|... |-. +|+-+|- +..+...-++ |-+-.. .|. +.++ .+.+||+|.+..++..
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~ 121 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYPEA--TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADY-SKYD-FEEKYDMVVSALSIHH 121 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTC--EEEEEESCHHHHHHHHHHTCSCTTEEEEESCT-TTCC-CCSCEEEEEEESCGGG
T ss_pred CeEEEecCCCCHHHHHHHHhCCCC--eEEEEECCHHHHHHHHHhhccCCCEEEEeCch-hccC-CCCCceEEEEeCcccc
Confidence 68999999999999988754 221 3444443 3444444333 111112 222 2222 2389999999998885
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+... ....++-|+-|+|+|||.++|.|
T Consensus 122 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 122 LEDE--DKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp SCHH--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHH--HHHHHHHHHHHhcCCCcEEEEEE
Confidence 4321 23358999999999999999976
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0073 Score=60.58 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=74.7
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----ccc-cccc-ccccccCCCCCCccceeccccccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL-IGTV-HDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGl-iG~~-hdwce~fstYprtyDl~Ha~~~fs 532 (615)
=..|+|+.+|.|.++..|..... +|+-+|- +.-+...-+ .|+ +-++ .|.. .++. +.+||+|.++.+|.
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~-~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDIN-AANI-QENYDFIVSTVVFM 195 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGG-GCCC-CSCEEEEEECSSGG
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccc-cccc-cCCccEEEEccchh
Confidence 35799999999999999987643 5666654 344443322 243 1122 2332 2333 78999999999988
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEEcC--------------hhHHHHHHHHHhhcCccc
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDK--------------SSIINYIRKFITALKWDG 581 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iird~--------------~~~~~~~~~~~~~~~w~~ 581 (615)
.+.. -.+..++-+|-|+|+|||.++|-.. .-.-++++++... |++
T Consensus 196 ~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ 254 (286)
T 3m70_A 196 FLNR--ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEF 254 (286)
T ss_dssp GSCG--GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEE
T ss_pred hCCH--HHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEE
Confidence 5532 2467899999999999999776421 1124567777766 776
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.011 Score=56.72 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=66.0
Q ss_pred eeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc----cc-------ccccc-cccccCCCCCCcccee
Q 007165 460 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GL-------IGTVH-DWCESFSTYPRTYDLL 525 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R----Gl-------iG~~h-dwce~fstYprtyDl~ 525 (615)
-..|+|..+|.|.++.+|... +.. +|+-+|- +..+...-++ |+ +-+++ |. +..+.-+.+||+|
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v 106 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSFFE--QITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL-TYQDKRFHGYDAA 106 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTTCS--EEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT-TSCCGGGCSCSEE
T ss_pred CCEEEEeCCCCCHHHHHHHhhCCCC--EEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc-ccccccCCCcCEE
Confidence 358999999999999999754 321 4444443 3445444433 21 11121 22 2222223689999
Q ss_pred cccccccccccCCCChhhhhhhhcccccCCcEEEEEcChh
Q 007165 526 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS 565 (615)
Q Consensus 526 Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~ 565 (615)
-+..+|..+.. -.+..++-|+-|+|+|||.+|+-+..+
T Consensus 107 ~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~li~~~~~~ 144 (217)
T 3jwh_A 107 TVIEVIEHLDL--SRLGAFERVLFEFAQPKIVIVTTPNIE 144 (217)
T ss_dssp EEESCGGGCCH--HHHHHHHHHHHTTTCCSEEEEEEEBHH
T ss_pred eeHHHHHcCCH--HHHHHHHHHHHHHcCCCEEEEEccCcc
Confidence 99999886532 235788999999999999998876653
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0059 Score=64.70 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=76.4
Q ss_pred eeeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHHhhc---------c-c----cccc-ccccccC------C
Q 007165 461 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR---------G-L----IGTV-HDWCESF------S 516 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy~R---------G-l----iG~~-hdwce~f------s 516 (615)
..|+|..+|-|.++..|... |-. .|+=+|- +.-|.+.-++ | + +-.. .|..+ + +
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~-l~~~~~~~ 161 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHG--KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIEN-LATAEPEG 161 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTC--EEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTC-GGGCBSCC
T ss_pred CEEEEecCccCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHH-hhhcccCC
Confidence 47999999999998888643 322 4444553 3555555444 4 1 2222 23332 2 2
Q ss_pred CCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh-----------------------hHHHHHHHH
Q 007165 517 TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-----------------------SIINYIRKF 573 (615)
Q Consensus 517 tYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~-----------------------~~~~~~~~~ 573 (615)
.-+.+||+|+++.+|..+. +...+|-|+-|+|||||++++.|-. -..+++.++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~----d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLST----NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRL 237 (383)
T ss_dssp CCTTCEEEEEEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHH
T ss_pred CCCCCEEEEEEccchhcCC----CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHH
Confidence 2246999999999988543 3789999999999999999997521 123778888
Q ss_pred HhhcCccc
Q 007165 574 ITALKWDG 581 (615)
Q Consensus 574 ~~~~~w~~ 581 (615)
+..-.++.
T Consensus 238 l~~aGF~~ 245 (383)
T 4fsd_A 238 VAEAGFRD 245 (383)
T ss_dssp HHHTTCCC
T ss_pred HHHCCCce
Confidence 88777764
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.058 Score=59.94 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhc-----------------CCCccccCChhchhHHHHHHH
Q 007165 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------------HDIIAMSLAPNDVHENQIQFA 256 (615)
Q Consensus 194 ~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~-----------------~~V~gvdis~~Dls~a~i~~A 256 (615)
...+.+.+++.. ....+|+|-+||+|+|.....+ ..+.|.++.+....-+.....
T Consensus 204 ~Vv~lmv~l~~p--------~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~ 275 (530)
T 3ufb_A 204 PVVRFMVEVMDP--------QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL 275 (530)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc--------CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence 456667777753 2345799999999998765432 124455444433322222222
Q ss_pred HHcCCC-cEEEEecCCCCCC----CCCCceEEEecccccc--c-----------c--cch-HHHHHHHHhccC-------
Q 007165 257 LERGIP-STLGVLGTKRLPY----PSRSFELAHCSRCRID--W-----------L--QRD-GILLLELDRLLR------- 308 (615)
Q Consensus 257 ~erg~~-~~~~v~d~~~Lpf----pd~sFDlV~~s~~~l~--~-----------~--~d~-~~~L~ei~RvLk------- 308 (615)
. +|.. ..+..+|....|+ +...||+|+++-- +. + . .+. -.++..+.+.||
T Consensus 276 l-hg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPP-f~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~ 353 (530)
T 3ufb_A 276 L-HGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPP-FGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSD 353 (530)
T ss_dssp H-HTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCC-SSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSS
T ss_pred h-cCCccccccccccccCchhhhcccccceEEEecCC-CCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccC
Confidence 2 2443 4666777655543 2357999998531 21 0 0 011 235677777776
Q ss_pred CCeEEEEEcCCC
Q 007165 309 PGGYFVYSSPEA 320 (615)
Q Consensus 309 PGG~Lvis~P~~ 320 (615)
|||++++..|+.
T Consensus 354 ~gGr~avVlP~g 365 (530)
T 3ufb_A 354 NGGRAAVVVPNG 365 (530)
T ss_dssp SCCEEEEEEEHH
T ss_pred CCceEEEEecch
Confidence 799999999863
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.015 Score=54.90 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=45.0
Q ss_pred Cccceeccccccccccc----CC---CChhhhhhhhcccccCCcEEEEEcCh-hHHHHHHHHHhhcCccceeeccccccC
Q 007165 520 RTYDLLHAWKVFSEIEE----RG---CSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWDGWLSEVEPRID 591 (615)
Q Consensus 520 rtyDl~Ha~~~fs~~~~----~~---c~~~~i~~EmdRilRp~g~~iird~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~ 591 (615)
.+||++-+++.+..... .. -....++-|+-|+|+|||.+++..-. +-...+...+... |.. +.......
T Consensus 105 ~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~-f~~-v~~~~~~~- 181 (201)
T 2plw_A 105 KKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM-FQL-VHTTKPKA- 181 (201)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTT-EEE-EEECCCC--
T ss_pred CcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHH-Hhe-EEEECCcc-
Confidence 68999998876542100 00 00134788999999999999985311 2233444444442 432 12221111
Q ss_pred cCCCCCceEEEEEe
Q 007165 592 ALSSSEERVLIAKK 605 (615)
Q Consensus 592 ~~~~~~e~~l~~~k 605 (615)
.-..+.|..+||++
T Consensus 182 ~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 182 SRNESREIYLVCKN 195 (201)
T ss_dssp ----CCEEEEEEEE
T ss_pred cCCcCceEEEEEec
Confidence 11245788999986
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.017 Score=54.54 Aligned_cols=111 Identities=16% Similarity=0.204 Sum_probs=72.8
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc-ccccccccccCCCCCCccceecccccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-IGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 535 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl-iG~~hdwce~fstYprtyDl~Ha~~~fs~~~ 535 (615)
+|+|+.+|.|.++.+|..... +|+-++- +..+...-++ |+ +-+++.=.+.++.-+.+||+|.+. |..+.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~ 106 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLP 106 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCC
Confidence 799999999999999987743 6666664 3555544443 33 222222223333223789999984 33221
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEEcC-----------------hhHHHHHHHHHhhcCccc
Q 007165 536 ERGCSFEDLLIEMDRMLRPEGFVIIRDK-----------------SSIINYIRKFITALKWDG 581 (615)
Q Consensus 536 ~~~c~~~~i~~EmdRilRp~g~~iird~-----------------~~~~~~~~~~~~~~~w~~ 581 (615)
.-+...++-+|-|+|+|||.+++.+- .-..+++++++. .|++
T Consensus 107 --~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v 165 (202)
T 2kw5_A 107 --SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNW 165 (202)
T ss_dssp --HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCE
T ss_pred --HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceE
Confidence 12467899999999999999999841 123577777777 6765
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0026 Score=60.26 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=70.0
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc-----ccccccccccccCCCCCCccceeccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR-----GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 534 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R-----GliG~~hdwce~fstYprtyDl~Ha~~~fs~~ 534 (615)
..|+|+.+|-|.++..|.....- +|+=++- +..+...-++ .+--+..|..+ ++.=+.+||+|-+.+.|..+
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~~~~~ 120 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRK-LDFPSASFDVVLEKGTLDAL 120 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTS-CCSCSSCEEEEEEESHHHHH
T ss_pred CeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhc-CCCCCCcccEEEECcchhhh
Confidence 47999999999999988754210 3333332 2333333222 11112223322 22224789999998888643
Q ss_pred c-----------cCCCChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHH--hhcCccce
Q 007165 535 E-----------ERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFI--TALKWDGW 582 (615)
Q Consensus 535 ~-----------~~~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~--~~~~w~~~ 582 (615)
. .+.-....++-|+-|+|+|||.+|+.+-..- ...+.++ .+..|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~-~~~~~~~~~~~~~~~~~ 180 (215)
T 2pxx_A 121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP-HFRTRHYAQAYYGWSLR 180 (215)
T ss_dssp TTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH-HHHHHHHCCGGGCEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc-HHHHHHHhccccCcEEE
Confidence 2 0112468899999999999999999875432 1123333 24467764
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.019 Score=58.99 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=66.5
Q ss_pred cCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCCCchhHHhh----ccc----ccccccccccCCCCCCccceec
Q 007165 456 QKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYD----RGL----IGTVHDWCESFSTYPRTYDLLH 526 (615)
Q Consensus 456 ~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~~tL~~iy~----RGl----iG~~hdwce~fstYprtyDl~H 526 (615)
.... ..|+|..+|-|.++.+|... |-. .|+-+|-++.+...-+ .|+ -=+-+|..+ ..|..||++.
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v~ 238 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAEPSA--RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ---EVPSNGDIYL 238 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHCTTC--EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT---CCCSSCSEEE
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHCCCC--EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC---CCCCCCCEEE
Confidence 4445 89999999999999998643 322 2333333444444322 232 223345544 3678899999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 527 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 527 a~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+.+++..+... ....+|-++-|.|+|||.++|-|
T Consensus 239 ~~~vl~~~~~~--~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 239 LSRIIGDLDEA--ASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp EESCGGGCCHH--HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EchhccCCCHH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 99888644332 24689999999999999999985
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.005 Score=60.49 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=76.2
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----c------------------------------
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----G------------------------------ 503 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----G------------------------------ 503 (615)
.-.+|+|+.+|.|.++..|..... -+|+=+|- ++.+...-++ +
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 446899999999999888876543 35665654 2444443221 1
Q ss_pred -cc-cc-cccccccCCCCC---CccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh-------------
Q 007165 504 -LI-GT-VHDWCESFSTYP---RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS------------- 564 (615)
Q Consensus 504 -li-G~-~hdwce~fstYp---rtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~------------- 564 (615)
-| -+ -.|..+.-..-+ .+||+|.+..++..+..+-=+...+|-||-|+|+|||.+|+.+..
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 213 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS 213 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence 02 11 123222211123 799999999887732211113678999999999999999997621
Q ss_pred ---hHHHHHHHHHhhcCccc
Q 007165 565 ---SIINYIRKFITALKWDG 581 (615)
Q Consensus 565 ---~~~~~~~~~~~~~~w~~ 581 (615)
-..+.+.+++....++.
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~ 233 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTI 233 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEE
T ss_pred ccccCHHHHHHHHHHCCCEE
Confidence 12447788888777765
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0036 Score=64.02 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=64.8
Q ss_pred CCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhh----cccc---cccccccccCCCCC-Cccceec
Q 007165 457 KNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGLI---GTVHDWCESFSTYP-RTYDLLH 526 (615)
Q Consensus 457 ~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~----RGli---G~~hdwce~fstYp-rtyDl~H 526 (615)
...-..|+|..+|.|.++..|... . ..|+=++- +.-+...-+ .|+- -..+.=.+.++ +| .+||+|.
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~ 190 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFG---SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP-FDKGAVTASW 190 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-CCTTCEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC-CCCCCEeEEE
Confidence 344568999999999999988754 2 23444443 244443333 3432 22221122333 33 7999999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 527 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 527 a~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+.++|..+ +...+|-|+-|+|+|||.+++-+
T Consensus 191 ~~~~l~~~-----~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 191 NNESTMYV-----DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp EESCGGGS-----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCchhhC-----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 99888744 38999999999999999999864
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.014 Score=60.95 Aligned_cols=110 Identities=13% Similarity=0.150 Sum_probs=66.2
Q ss_pred HHHhhhccccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCCCCchhH----Hhhccc---ccccccccccCCCCC
Q 007165 447 YWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI----IYDRGL---IGTVHDWCESFSTYP 519 (615)
Q Consensus 447 y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~~tL~~----iy~RGl---iG~~hdwce~fstYp 519 (615)
|.+.+...+....=..|+|..+|-|.++..+...+. -.|+=++....+.. +-+.|+ |-+.+.-.+.+ ..|
T Consensus 38 y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~~~ 114 (348)
T 2y1w_A 38 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-SLP 114 (348)
T ss_dssp HHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCS
T ss_pred HHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhC-CCC
Confidence 444333233322335799999999999888765542 13333333222222 122244 33333222332 246
Q ss_pred CccceecccccccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 520 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 520 rtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
..||+|-+..++..+... .+...+.++-|+|+|||.+|+.
T Consensus 115 ~~~D~Ivs~~~~~~~~~~--~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 115 EQVDIIISEPMGYMLFNE--RMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp SCEEEEEECCCBTTBTTT--SHHHHHHHGGGGEEEEEEEESC
T ss_pred CceeEEEEeCchhcCChH--HHHHHHHHHHhhcCCCeEEEEe
Confidence 789999998887654322 4778889999999999999854
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0043 Score=62.10 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=63.9
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc---ccccccccccCCC-CCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFST-YPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl---iG~~hdwce~fst-YprtyDl~Ha~~~f 531 (615)
..|+|+.+|.|+++..|...+.. +|+-++- +.-+...-++ |+ +-+.+.=++.++. -+.+||+|.+.+++
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 143 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 143 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CeEEEECCCCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence 47999999999999888755421 4444543 2444443333 32 2222222222222 35789999998877
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
.....+.-+...+|-|+-|+|+|||.+|+...
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 144 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 53111112367899999999999999999753
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.044 Score=50.86 Aligned_cols=129 Identities=15% Similarity=0.152 Sum_probs=84.6
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcccccccccccccCCCCCCccceecccccccccccC---
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER--- 537 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~~--- 537 (615)
.|+|..+|-|.++.+|...- +|+=++- +.-+.. ...+-=+-.|.-+++.. .+||+|-++..|......
T Consensus 26 ~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~~~~~~~d~~~~~~~--~~fD~i~~n~~~~~~~~~~~~ 97 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRGGNLVRADLLCSINQ--ESVDVVVFNPPYVPDTDDPII 97 (170)
T ss_dssp EEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSSSCEEECSTTTTBCG--GGCSEEEECCCCBTTCCCTTT
T ss_pred eEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccCCeEEECChhhhccc--CCCCEEEECCCCccCCccccc
Confidence 79999999999999998775 7777764 344444 22222233444454432 899999998776632111
Q ss_pred --CCChhhhhhhhcccccCCcEEEEEc-ChhHHHHHHHHHhhcCccceeeccccccCcCCCCCceEEEEEe
Q 007165 538 --GCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKK 605 (615)
Q Consensus 538 --~c~~~~i~~EmdRilRp~g~~iird-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~l~~~k 605 (615)
+.....++-++=|.| |||.+++-. ...-.++++++++...|+...... . ....|++++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~--~----~~~~e~~~~~~~ 161 (170)
T 3q87_B 98 GGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKV--R----KILGETVYIIKG 161 (170)
T ss_dssp BCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEE--E----ECSSSEEEEEEE
T ss_pred cCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEe--e----ccCCceEEEEEE
Confidence 122455667777777 999999965 445688899999999998732221 1 124577777654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.012 Score=59.58 Aligned_cols=111 Identities=9% Similarity=0.092 Sum_probs=74.3
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----ccccc---ccccccccCCCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGLIG---TVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGliG---~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
..|+|+.||.|+|+.++...-.= .|+-++. +..+...-+ .|+-. .++.=++.+.. +.+||+|..+..++
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~~ 203 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVVR 203 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCSS
T ss_pred CEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCchh
Confidence 46999999999999887643110 3444453 244443322 24422 23322333333 67999998765543
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEEcCh-------hHHHHHHHHHhhcCccce
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-------SIINYIRKFITALKWDGW 582 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iird~~-------~~~~~~~~~~~~~~w~~~ 582 (615)
...++-++-|+|+|||.+++-+.. +.++++++.+....|+++
T Consensus 204 --------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~ 252 (278)
T 2frn_A 204 --------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp --------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred --------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeE
Confidence 367788899999999999996543 568889999999999874
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0078 Score=56.94 Aligned_cols=97 Identities=10% Similarity=0.178 Sum_probs=60.8
Q ss_pred eeeeeccccchhHH-hhhcCCCcEEEEeccCCC-CCchhHHhhc----cc-ccccccccccCCCCCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFA-AALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-IGTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfa-aal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl-iG~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
.+|+|..+|-|.++ +.+..... +|+-+|. +.-+...-++ |. +-..+.-.+.++.-+.+||+|.+.+++..
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 101 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFH 101 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGG
T ss_pred CEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHh
Confidence 57999999999874 44443332 4555554 2444443332 21 12222112223322478999999887765
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+.. -+...++-|+-|+|+|||.+++.+
T Consensus 102 ~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 102 MRK--NDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp SCH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCH--HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 421 247889999999999999999975
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0075 Score=63.31 Aligned_cols=101 Identities=13% Similarity=0.198 Sum_probs=65.0
Q ss_pred CceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCCCchhHHhh----ccccc----ccccccccCCCCCCccceeccc
Q 007165 458 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYD----RGLIG----TVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 458 ~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~~tL~~iy~----RGliG----~~hdwce~fstYprtyDl~Ha~ 528 (615)
...+.|+|..+|-|.++.+|.+. |-. .|+=+|-|..+...-+ .|+-+ +-+|--+.=...|.+||++.+.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEV--EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTC--EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCC--EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEe
Confidence 45689999999999999999642 221 2333333444444333 24321 2233222100367899999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
.++..+... +...+|-++=|.|+|||.++|-|
T Consensus 256 ~vlh~~~~~--~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 256 QFLDCFSEE--EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp SCSTTSCHH--HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred chhhhCCHH--HHHHHHHHHHHhcCCCcEEEEEe
Confidence 988644322 24678999999999999999965
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.01 Score=59.12 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=74.8
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc-ccccc-cccccCCCCCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-IGTVH-DWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl-iG~~h-dwce~fstYprtyDl~Ha~~~fs~ 533 (615)
..|+|+.+|.|.++.++.+... +|+=++- +..+...-++ |+ +-+++ |+-+.|+ +.+||+|.++.++..
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~--~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVANLYAEL 196 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEEECCHHH
T ss_pred CEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCc--CCCCCEEEECCcHHH
Confidence 4799999999999888875533 5555553 3444444332 33 22222 3444332 468999999865542
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEcC-hhHHHHHHHHHhhcCccc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDG 581 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird~-~~~~~~~~~~~~~~~w~~ 581 (615)
+..++-++-|+|+|||.+++.+- ..-.+.+++.+....++.
T Consensus 197 -------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~ 238 (254)
T 2nxc_A 197 -------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRP 238 (254)
T ss_dssp -------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEE
T ss_pred -------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEE
Confidence 57889999999999999999653 344778888888877876
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.01 Score=61.54 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=61.0
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCCCchhH----Hhhccc---ccccccccccCCCCC-Cccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI----IYDRGL---IGTVHDWCESFSTYP-RTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~~tL~~----iy~RGl---iG~~hdwce~fstYp-rtyDl~Ha~~~fs 532 (615)
..|+|+.+|-|.++..+...+.- .|+=++....+.. +-+.|+ |-+.+.-.+.++ .| .+||+|.+..++.
T Consensus 40 ~~VLDiGcGtG~ls~~la~~g~~--~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMGY 116 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCBT
T ss_pred CEEEEecCccHHHHHHHHHCCCC--EEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCchh
Confidence 47999999999998887765421 3444443323332 223354 333443334333 45 7899999986644
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEE
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
.+.. .-.+..++-+++|.|+|||.+|+
T Consensus 117 ~l~~-~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLLY-ESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBST-TCCHHHHHHHHHHHEEEEEEEES
T ss_pred hccc-HHHHHHHHHHHHhhcCCCeEEEE
Confidence 3322 13467889999999999999983
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.019 Score=56.06 Aligned_cols=96 Identities=19% Similarity=0.358 Sum_probs=61.8
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc-cccc-ccccccCCCCCCccceeccc-cc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-IGTV-HDWCESFSTYPRTYDLLHAW-KV 530 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl-iG~~-hdwce~fstYprtyDl~Ha~-~~ 530 (615)
.-.+|+|..+|-|.++..|..... +|+-++- +..|...-++ |+ +-.. .|..+ ++ .|.+||+|.+. +.
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~~ 115 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE-IA-FKNEFDAVTMFFST 115 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-CC-CCSCEEEEEECSSG
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh-cc-cCCCccEEEEcCCc
Confidence 346899999999999999986643 5666664 3555544332 32 1122 23332 33 46789999764 22
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
+..+.. =+...++-++-|+|+|||.+|+.
T Consensus 116 ~~~~~~--~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 116 IMYFDE--EDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp GGGSCH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCCH--HHHHHHHHHHHHHcCCCeEEEEe
Confidence 221111 13678899999999999999984
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.026 Score=59.77 Aligned_cols=114 Identities=16% Similarity=0.195 Sum_probs=69.8
Q ss_pred HHHHHHhhhccccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCCCCchhH----Hhhccc---ccccccccccCC
Q 007165 444 VVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI----IYDRGL---IGTVHDWCESFS 516 (615)
Q Consensus 444 v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~~tL~~----iy~RGl---iG~~hdwce~fs 516 (615)
...|.+.+........=..|+|+.+|.|.++..|..... -.|+=++..+-+.. +-..|+ |-+++.-.+.+.
T Consensus 48 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 125 (376)
T 3r0q_C 48 MDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDIS 125 (376)
T ss_dssp HHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCC
T ss_pred HHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcC
Confidence 334555443222233346799999999999888775532 14444443333333 333454 344454445443
Q ss_pred CCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 517 TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 517 tYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.|.+||+|.++.+...+.. .-.+..++-+++|+|+|||.+|+.
T Consensus 126 -~~~~~D~Iv~~~~~~~l~~-e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 126 -LPEKVDVIISEWMGYFLLR-ESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp -CSSCEEEEEECCCBTTBTT-TCTHHHHHHHHHHHEEEEEEEESS
T ss_pred -cCCcceEEEEcChhhcccc-hHHHHHHHHHHHhhCCCCeEEEEe
Confidence 5699999999764442221 124677899999999999999875
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.018 Score=55.32 Aligned_cols=108 Identities=11% Similarity=0.035 Sum_probs=71.1
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----ccc---cccc-cccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GLI---GTVH-DWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gli---G~~h-dwce~fstYprtyDl~Ha~~~f 531 (615)
..|+|+.+|.|.++.+|.... ..|+=++- +..+...-++ |+- -+++ |-.+.+...+ +||++-.++.+
T Consensus 57 ~~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~-~~D~v~~~~~~ 132 (204)
T 3njr_A 57 ELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP-LPEAVFIGGGG 132 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC-CCSEEEECSCC
T ss_pred CEEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC-CCCEEEECCcc
Confidence 579999999999998887652 24444443 3444443322 332 2222 3333233333 69998766522
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEc-ChhHHHHHHHHHhhcCccc
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDG 581 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird-~~~~~~~~~~~~~~~~w~~ 581 (615)
+.. ++-|+-|.|||||.+++.. ..+-+.++.+.++...++.
T Consensus 133 --------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i 174 (204)
T 3njr_A 133 --------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQL 174 (204)
T ss_dssp --------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEE
T ss_pred --------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcE
Confidence 356 8999999999999999975 4667888888888877775
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.019 Score=59.07 Aligned_cols=121 Identities=14% Similarity=0.171 Sum_probs=77.9
Q ss_pred cccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCCCchhHH----hhccccc----ccccccccCCCCCCccce
Q 007165 454 VAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKII----YDRGLIG----TVHDWCESFSTYPRTYDL 524 (615)
Q Consensus 454 ~~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~~tL~~i----y~RGliG----~~hdwce~fstYprtyDl 524 (615)
.+.+.....|+|..+|-|.++.+|.+. |-. .++-.|-|..+... -+.|+-+ +-+|..++ .|-.||+
T Consensus 164 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~p~~~D~ 238 (332)
T 3i53_A 164 KYDWAALGHVVDVGGGSGGLLSALLTAHEDL--SGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDP---LPAGAGG 238 (332)
T ss_dssp SSCCGGGSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC---CCCSCSE
T ss_pred hCCCCCCCEEEEeCCChhHHHHHHHHHCCCC--eEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCC---CCCCCcE
Confidence 345567789999999999999998642 321 11112333333332 2334421 23444444 4558999
Q ss_pred ecccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh----------------------hHHHHHHHHHhhcCccc
Q 007165 525 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS----------------------SIINYIRKFITALKWDG 581 (615)
Q Consensus 525 ~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~----------------------~~~~~~~~~~~~~~w~~ 581 (615)
+.+.+++..+... ....+|-++=|.|+|||.++|-|.. ...+++++++..-.++.
T Consensus 239 v~~~~vlh~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 315 (332)
T 3i53_A 239 YVLSAVLHDWDDL--SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAV 315 (332)
T ss_dssp EEEESCGGGSCHH--HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEE
T ss_pred EEEehhhccCCHH--HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEE
Confidence 9999988744322 2578999999999999999997642 12455667777666765
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.039 Score=55.25 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=63.2
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEe-cCCCCCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVL-GTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~-d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
..+|||+||++|.|+.+.+.. .|.++|+-+......+ ..+..|- .+.|... |...++- ..+|.|+|--.
T Consensus 79 g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~--~~~s~gwn~v~fk~gvDv~~~~~--~~~DtllcDIg- 153 (267)
T 3p8z_A 79 EGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV--PMSTYGWNIVKLMSGKDVFYLPP--EKCDTLLCDIG- 153 (267)
T ss_dssp CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC--CCCCTTTTSEEEECSCCGGGCCC--CCCSEEEECCC-
T ss_pred CCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc--hhhhcCcCceEEEeccceeecCC--ccccEEEEecC-
Confidence 458999999999999988754 5778888765442111 0112233 3567766 7655552 67999998542
Q ss_pred cccccch----H---HHHHHHHhccCCCeEEEEEcCCCC
Q 007165 290 IDWLQRD----G---ILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 290 l~~~~d~----~---~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
- -.+++ . ++|.-+.+.|++ |-|++-.-..+
T Consensus 154 e-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py 190 (267)
T 3p8z_A 154 E-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPY 190 (267)
T ss_dssp C-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCC
T ss_pred C-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCC
Confidence 1 22222 1 256666789998 78888765554
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.022 Score=59.47 Aligned_cols=143 Identities=17% Similarity=0.146 Sum_probs=85.0
Q ss_pred cCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCCCchhHHh----hcccc----cccccccccCCCCCCccceec
Q 007165 456 QKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIY----DRGLI----GTVHDWCESFSTYPRTYDLLH 526 (615)
Q Consensus 456 ~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~~tL~~iy----~RGli----G~~hdwce~fstYprtyDl~H 526 (615)
....-..|+|..+|.|.++.+|... |-+ +++=+|-+..+...- +.|+- =+-+|..+ ..|..||++.
T Consensus 179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v~ 253 (374)
T 1qzz_A 179 DWSAVRHVLDVGGGNGGMLAAIALRAPHL--RGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK---PLPVTADVVL 253 (374)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS---CCSCCEEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHCCCC--EEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC---cCCCCCCEEE
Confidence 3455678999999999999998643 221 222223233333322 23432 12344444 3466799999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEEcC--h--h-----------------------HHHHHHHHHhhcCc
Q 007165 527 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK--S--S-----------------------IINYIRKFITALKW 579 (615)
Q Consensus 527 a~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~--~--~-----------------------~~~~~~~~~~~~~w 579 (615)
+.+++-.+... ....+|-++-|.|+|||.++|-|. . + ..+++++++..-.+
T Consensus 254 ~~~vl~~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 331 (374)
T 1qzz_A 254 LSFVLLNWSDE--DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGL 331 (374)
T ss_dssp EESCGGGSCHH--HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTE
T ss_pred EeccccCCCHH--HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCC
Confidence 99888644322 135799999999999999998776 2 1 34566777777777
Q ss_pred cceeeccccccCcCCCCCceEEEEEecc
Q 007165 580 DGWLSEVEPRIDALSSSEERVLIAKKKL 607 (615)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~e~~l~~~k~~ 607 (615)
+.. ...+. .+..-.....++.++|.=
T Consensus 332 ~~~-~~~~~-~~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 332 ALA-SERTS-GSTTLPFDFSILEFTAVS 357 (374)
T ss_dssp EEE-EEEEE-CCSSCSSCEEEEEEEECC
T ss_pred ceE-EEEEC-CCCcccCCcEEEEEEECc
Confidence 752 22211 111000112788888863
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0051 Score=66.27 Aligned_cols=127 Identities=12% Similarity=0.157 Sum_probs=77.1
Q ss_pred HHHHHHHhhhccccCCceeeeeecccc------chhHHhhhcCC--CcEEEEeccCCC-CCchhHHhhcccccccccccc
Q 007165 443 RVVDYWKQMKTVAQKNTFRNVMDMNSN------LGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCE 513 (615)
Q Consensus 443 ~v~~y~~~l~~~~~~~~~Rnvmdm~a~------~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy~RGliG~~hdwce 513 (615)
....|.+.|.+... +-.+|+|+.+| .||.+..|... |- ..|+=+|- ++. +....=|=+++-=++
T Consensus 202 y~~~Ye~lL~~l~~--~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~--a~V~GVDiSp~m---~~~~~rI~fv~GDa~ 274 (419)
T 3sso_A 202 FTPHYDRHFRDYRN--QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPR--GQIYGLDIMDKS---HVDELRIRTIQGDQN 274 (419)
T ss_dssp CHHHHHHHHGGGTT--SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTT--CEEEEEESSCCG---GGCBTTEEEEECCTT
T ss_pred HHHHHHHHHHhhcC--CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCC--CEEEEEECCHHH---hhcCCCcEEEEeccc
Confidence 34567676764332 34789999999 67876666532 21 13333332 222 111110111111122
Q ss_pred cCCCC------CCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcC------------------hhHHHH
Q 007165 514 SFSTY------PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK------------------SSIINY 569 (615)
Q Consensus 514 ~fstY------prtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~------------------~~~~~~ 569 (615)
.++.- ..+||+|.+++... . .+....|-|+=|+|||||.+||.|- ..+++.
T Consensus 275 dlpf~~~l~~~d~sFDlVisdgsH~--~---~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~ 349 (419)
T 3sso_A 275 DAEFLDRIARRYGPFDIVIDDGSHI--N---AHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGL 349 (419)
T ss_dssp CHHHHHHHHHHHCCEEEEEECSCCC--H---HHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHH
T ss_pred ccchhhhhhcccCCccEEEECCccc--c---hhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHH
Confidence 21111 36899999876422 1 2367789999999999999999642 468999
Q ss_pred HHHHHhhcCccc
Q 007165 570 IRKFITALKWDG 581 (615)
Q Consensus 570 ~~~~~~~~~w~~ 581 (615)
+|+++..++|+.
T Consensus 350 lk~l~D~l~~~~ 361 (419)
T 3sso_A 350 LKSLIDAIQHQE 361 (419)
T ss_dssp HHHHHHHHTGGG
T ss_pred HHHHHHHhcccc
Confidence 999999999985
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.006 Score=79.22 Aligned_cols=98 Identities=16% Similarity=0.240 Sum_probs=40.2
Q ss_pred CCeEEEECCCCchHHHHHhcC---------CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCC-CCCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---------~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~L-pfpd~sFDlV~~ 285 (615)
..+||+||.|+|..+..+.+. ..+..|+++.....++.++.. +.+.....|.... ++..++||+|++
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~---~di~~~~~d~~~~~~~~~~~ydlvia 1317 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ---LHVTQGQWDPANPAPGSLGKADLLVC 1317 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH---HTEEEECCCSSCCCC-----CCEEEE
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh---cccccccccccccccCCCCceeEEEE
Confidence 468999999999765544321 122334443322222222211 1222222333332 345678999999
Q ss_pred cccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++ ++|-.++....|.+++++|||||++++..
T Consensus 1318 ~~-vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1318 NC-ALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp EC-C--------------------CCEEEEEE
T ss_pred cc-cccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 98 68888888899999999999999999865
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.01 Score=57.66 Aligned_cols=107 Identities=11% Similarity=0.142 Sum_probs=69.9
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcc--cccccccccccCCCC-CCccceeccccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG--LIGTVHDWCESFSTY-PRTYDLLHAWKVFSEIEE 536 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RG--liG~~hdwce~fstY-prtyDl~Ha~~~fs~~~~ 536 (615)
..|+|+.+|-|.++..|..... +|+-+|- +.-|...-++. +-=+-.|+.+..+-- +.+||+|.++
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------- 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------- 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE--------
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC--------
Confidence 4799999999999999987632 5666664 35565555552 111234555554422 4789999875
Q ss_pred CCCChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCcc
Q 007165 537 RGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWD 580 (615)
Q Consensus 537 ~~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~ 580 (615)
-+...++-|+-|+|||||.++.-........+.+.+....++
T Consensus 119 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~ 160 (226)
T 3m33_A 119 --RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWD 160 (226)
T ss_dssp --SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCE
T ss_pred --CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCe
Confidence 147788999999999999999443222334455555544433
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=94.99 E-value=0.017 Score=58.10 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=46.3
Q ss_pred CCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcC----------------hhHHHHHHHHHhhcCccc
Q 007165 519 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK----------------SSIINYIRKFITALKWDG 581 (615)
Q Consensus 519 prtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~----------------~~~~~~~~~~~~~~~w~~ 581 (615)
+.+||+|-+..+|..+...--+...+|-||-|+|||||.++|.+. .-..+++++++..-.++.
T Consensus 172 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 250 (289)
T 2g72_A 172 PLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKV 250 (289)
T ss_dssp CSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeE
Confidence 357999999988874322112478899999999999999999631 113677888888777765
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0074 Score=58.38 Aligned_cols=135 Identities=11% Similarity=0.045 Sum_probs=77.9
Q ss_pred ceeeeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHHhh----cccc---c-ccccccccCCCCC-----Ccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYD----RGLI---G-TVHDWCESFSTYP-----RTY 522 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy~----RGli---G-~~hdwce~fstYp-----rty 522 (615)
.-++|+|+.+|.|+++..|... +- -.|+-++- +..+.+.-+ .|+- - +..|..+..+..+ .+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPG--ARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTT--CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCC--CEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 3468999999999999988752 22 14444543 344444332 2442 2 2234445455555 689
Q ss_pred ceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcC-----hhHHHHHHHHHhhcCccceeeccccccCcCCCCC
Q 007165 523 DLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-----SSIINYIRKFITALKWDGWLSEVEPRIDALSSSE 597 (615)
Q Consensus 523 Dl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~-----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 597 (615)
|+|..++..... . ...+++.++ |.|||||.+++.|- .++++.+++ .=++++. .+... -+.....
T Consensus 136 D~V~~d~~~~~~-~---~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~---~~~~~~~--~~~~~-~~~~~~~ 204 (221)
T 3u81_A 136 DMVFLDHWKDRY-L---PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECT--HYSSY-LEYMKVV 204 (221)
T ss_dssp SEEEECSCGGGH-H---HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHH---CTTEEEE--EEEEE-ETTTTEE
T ss_pred EEEEEcCCcccc-h---HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhh---CCCceEE--Ecccc-cccCCCC
Confidence 999988765522 1 234567778 99999999999764 344444443 2345542 11100 0111234
Q ss_pred ceEEEEEec
Q 007165 598 ERVLIAKKK 606 (615)
Q Consensus 598 e~~l~~~k~ 606 (615)
+.+.+++++
T Consensus 205 dG~~~~~~~ 213 (221)
T 3u81_A 205 DGLEKAIYQ 213 (221)
T ss_dssp EEEEEEEEC
T ss_pred CceEEEEEe
Confidence 678887764
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.039 Score=54.65 Aligned_cols=97 Identities=10% Similarity=0.115 Sum_probs=58.5
Q ss_pred eeeeeeccccchhHHhhhcCC-----CcEEEEeccCCCCCchhHHhhccc---ccccc-cccccCCCC-----CCcccee
Q 007165 460 FRNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGL---IGTVH-DWCESFSTY-----PRTYDLL 525 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~-----~vwvmnvvp~~~~~tL~~iy~RGl---iG~~h-dwce~fstY-----prtyDl~ 525 (615)
-++|+|+.+|.|.++.+|... .|.-+-+-|....-.-.-+-..|+ |-+.+ |-.|..+.. +.+||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 468999999999998888642 244443333322222222333344 22222 323333333 4789999
Q ss_pred cccccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 526 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 526 Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
..+.-.. ....++-++=|+|||||.+++.|-
T Consensus 141 ~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 141 FIDADKT-------NYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEESCGG-------GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEcCChH-------HhHHHHHHHHHhcCCCeEEEEECC
Confidence 8776422 245677788899999999999643
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.013 Score=56.38 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=59.6
Q ss_pred eeeeeccccchhHHhhhcCC-C-cEEEEeccCCC-CCchhHHhh----cccc---cccc-cccccCCCCC-----Cccce
Q 007165 461 RNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIYD----RGLI---GTVH-DWCESFSTYP-----RTYDL 524 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~-vwvmnvvp~~~-~~tL~~iy~----RGli---G~~h-dwce~fstYp-----rtyDl 524 (615)
.+|+|..+|.|.++..|... | - -.|+-++- +..+...-+ .|+- -+.+ |..+.++..+ .+||+
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKD--GTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTT--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 48999999999999998764 2 2 13444443 233433322 2432 1222 4334333333 78999
Q ss_pred ecccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 525 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 525 ~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
|..++-.. ....++-++=|.|+|||.+|+.|-.
T Consensus 144 v~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 144 IYIDADKA-------NTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EEECSCGG-------GHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEECCCHH-------HHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 98666322 3566788888999999999997643
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.024 Score=59.56 Aligned_cols=138 Identities=13% Similarity=0.166 Sum_probs=85.9
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCCCchhH----Hhhccccc----ccccccccCCCCCCcccee
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKI----IYDRGLIG----TVHDWCESFSTYPRTYDLL 525 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~~tL~~----iy~RGliG----~~hdwce~fstYprtyDl~ 525 (615)
+.......|+|..+|-|.++.+|.+. |-. .++=+|-+..+.. +-+.|+-+ +-+|..+ ..|-.||++
T Consensus 198 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~---~~p~~~D~v 272 (369)
T 3gwz_A 198 YDFSGAATAVDIGGGRGSLMAAVLDAFPGL--RGTLLERPPVAEEARELLTGRGLADRCEILPGDFFE---TIPDGADVY 272 (369)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTT---CCCSSCSEE
T ss_pred CCCccCcEEEEeCCCccHHHHHHHHHCCCC--eEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCC---CCCCCceEE
Confidence 45667899999999999999999643 211 1222222333333 22334421 2344444 455589999
Q ss_pred cccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh------------------------hHHHHHHHHHhhcCccc
Q 007165 526 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS------------------------SIINYIRKFITALKWDG 581 (615)
Q Consensus 526 Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~------------------------~~~~~~~~~~~~~~w~~ 581 (615)
.+.+++..+... ....+|-++=|.|+|||.++|-|.. ...++.++++..-.++.
T Consensus 273 ~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 350 (369)
T 3gwz_A 273 LIKHVLHDWDDD--DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRV 350 (369)
T ss_dssp EEESCGGGSCHH--HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEE
T ss_pred EhhhhhccCCHH--HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeE
Confidence 999988744322 1346999999999999999996521 12466778888777876
Q ss_pred eeeccccccCcCCCCCceEEEEEe
Q 007165 582 WLSEVEPRIDALSSSEERVLIAKK 605 (615)
Q Consensus 582 ~~~~~~~~~~~~~~~~e~~l~~~k 605 (615)
. .... ...+...|+.|+|
T Consensus 351 ~-~~~~-----~~~~~~svie~~~ 368 (369)
T 3gwz_A 351 E-RSLP-----CGAGPVRIVEIRR 368 (369)
T ss_dssp E-EEEE-----CSSSSEEEEEEEE
T ss_pred E-EEEE-----CCCCCcEEEEEEe
Confidence 2 2221 0123457888776
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.029 Score=53.80 Aligned_cols=118 Identities=16% Similarity=0.219 Sum_probs=74.5
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhh----ccc--cccc-ccccccCCC-C-CCccceecccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGL--IGTV-HDWCESFST-Y-PRTYDLLHAWK 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~----RGl--iG~~-hdwce~fst-Y-prtyDl~Ha~~ 529 (615)
..|+|+.+|-|.|+.+|... |- .+|+-++- +.-+.+.-+ .|+ +-++ .|..+ +.. + +.+||+|.++.
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPD--INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEES
T ss_pred CeEEEEccCcCHHHHHHHHHCCC--CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEEC
Confidence 35999999999999888643 32 25555553 344444332 243 2222 23332 321 2 46899999873
Q ss_pred ccccc----ccCCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhhcCccc
Q 007165 530 VFSEI----EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDG 581 (615)
Q Consensus 530 ~fs~~----~~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~~~w~~ 581 (615)
..... .+++=....++-++-|+|+|||.+++. |..+..+.+.+++....|+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 176 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKL 176 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCee
Confidence 32100 112223567999999999999999997 46567788888887777775
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.08 Score=52.28 Aligned_cols=133 Identities=11% Similarity=0.087 Sum_probs=78.7
Q ss_pred eeeeeeccccchhHHhhhcCC-C-cEEEEeccCCC-CCchhHHhhc----cccc----ccccccccCCCCCC--ccceec
Q 007165 460 FRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIYDR----GLIG----TVHDWCESFSTYPR--TYDLLH 526 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~-~-vwvmnvvp~~~-~~tL~~iy~R----GliG----~~hdwce~fstYpr--tyDl~H 526 (615)
-++|+|..+|.|+++.+|... | -. .|+-++- +..+...-++ |+-. +..|..+..+..+. +||+|.
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADG--QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC--EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 468999999999999988754 2 21 3444543 3455544333 4421 22344443444444 899998
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEEcChh------------HHHHHHHHHhhc----Cccceeecccccc
Q 007165 527 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS------------IINYIRKFITAL----KWDGWLSEVEPRI 590 (615)
Q Consensus 527 a~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~------------~~~~~~~~~~~~----~w~~~~~~~~~~~ 590 (615)
++.-.. ....++-++=|+|||||.+|+.|-.. ....++++...+ +|++... .. -
T Consensus 142 ~d~~~~-------~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~--~ 211 (248)
T 3tfw_A 142 IDADKP-------NNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATAL-QT--V 211 (248)
T ss_dssp ECSCGG-------GHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE-EE--C
T ss_pred ECCchH-------HHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEe-ec--C
Confidence 876322 24567888899999999999875431 233444444443 4554211 00 0
Q ss_pred CcCCCCCceEEEEEec
Q 007165 591 DALSSSEERVLIAKKK 606 (615)
Q Consensus 591 ~~~~~~~e~~l~~~k~ 606 (615)
+ ....+.+.+++|+
T Consensus 212 g--~~~~DG~~i~~~~ 225 (248)
T 3tfw_A 212 G--TKGWDGFTLAWVN 225 (248)
T ss_dssp S--TTCSEEEEEEEEC
T ss_pred C--CCCCCeeEEEEEe
Confidence 1 1235789999886
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.032 Score=58.01 Aligned_cols=101 Identities=14% Similarity=0.187 Sum_probs=63.7
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCCCchh--HHhhccccc----ccccccccCCCCCCccceecc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLK--IIYDRGLIG----TVHDWCESFSTYPRTYDLLHA 527 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~~tL~--~iy~RGliG----~~hdwce~fstYprtyDl~Ha 527 (615)
+.......|+|..+|-|.++.+|.+. |-. .++=.|-+..+. .+-..|+-+ +-+|-. ...| +||++.+
T Consensus 180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~---~~~p-~~D~v~~ 253 (348)
T 3lst_A 180 GDFPATGTVADVGGGRGGFLLTVLREHPGL--QGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL---REVP-HADVHVL 253 (348)
T ss_dssp SCCCSSEEEEEETCTTSHHHHHHHHHCTTE--EEEEEECHHHHTTCCCCCGGGTTSEEEEECCTT---TCCC-CCSEEEE
T ss_pred CCccCCceEEEECCccCHHHHHHHHHCCCC--EEEEecCHHHhhcccccccCCCCCeEEEecCCC---CCCC-CCcEEEE
Confidence 45667889999999999999998642 321 122222211111 000123321 223433 4456 9999999
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 528 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 528 ~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
.+++-.+... +...+|-|+-|.|||||.++|-|.
T Consensus 254 ~~vlh~~~d~--~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 254 KRILHNWGDE--DSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp ESCGGGSCHH--HHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred ehhccCCCHH--HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9988754322 236899999999999999999763
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.031 Score=53.66 Aligned_cols=94 Identities=13% Similarity=0.047 Sum_probs=59.8
Q ss_pred eeeeeccccchhHHhhhcCC-C-cEEEEeccCCC-CCchhHHhh----cccc---ccc-ccccccCCCCC----Ccccee
Q 007165 461 RNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIYD----RGLI---GTV-HDWCESFSTYP----RTYDLL 525 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~-vwvmnvvp~~~-~~tL~~iy~----RGli---G~~-hdwce~fstYp----rtyDl~ 525 (615)
.+|+|..+|.|+++.+|... | -. .|+-++- +..+...-+ .|+- -+. .|..+.+...+ .+||+|
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGG--RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSC--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 57999999999999988754 2 11 4555553 344444332 2442 222 23333222222 579999
Q ss_pred cccccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 526 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 526 Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
..++..+ ....++-++-|+|||||.+++.|.
T Consensus 138 ~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 138 FIDADKQ-------NNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EECSCGG-------GHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEcCCcH-------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 8776543 246788899999999999998644
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.022 Score=58.11 Aligned_cols=103 Identities=16% Similarity=0.098 Sum_probs=64.5
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcc-----------c--cccccccccc------CCCC
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG-----------L--IGTVHDWCES------FSTY 518 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RG-----------l--iG~~hdwce~------fstY 518 (615)
.-.+|+|+.+|-|+++..|...+.. +|+-+|- +.-|...-+|- . +-..+-=++. |..-
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRIN--KLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 3458999999999999998865432 4555653 34444443331 0 1122222333 3222
Q ss_pred CCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 519 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 519 prtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
+.+||+|-+...+..+..+.-+...+|-|+-|+|+|||.+|+..-
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 458999998877642211111356899999999999999999743
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.022 Score=58.96 Aligned_cols=104 Identities=11% Similarity=0.090 Sum_probs=67.1
Q ss_pred ccCCc-eeeeeeccccchhHHhhhcCC-CcEEEEeccCCCCCchhHHh----hcccc----cccccccccCCCCCCccce
Q 007165 455 AQKNT-FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIY----DRGLI----GTVHDWCESFSTYPRTYDL 524 (615)
Q Consensus 455 ~~~~~-~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~~tL~~iy----~RGli----G~~hdwce~fstYprtyDl 524 (615)
++... .+.|+|..+|.|.++.+|... |-. .++=+|-+..+...- +.|+- =+-+|.-+.-...|..||+
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~ 251 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRHPQL--TGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADV 251 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHCTTC--EEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEE
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhCCCC--eEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccE
Confidence 44555 889999999999999998643 321 122223334443322 22432 2233433321115778999
Q ss_pred ecccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 525 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 525 ~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+.+.+++..+... ....+|-++-|.|+|||.++|-|
T Consensus 252 v~~~~vlh~~~~~--~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 252 VMLNDCLHYFDAR--EAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp EEEESCGGGSCHH--HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEecccccCCHH--HHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999988754322 25789999999999999999975
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.0079 Score=60.88 Aligned_cols=95 Identities=15% Similarity=0.258 Sum_probs=63.5
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc-----ccccccccccCCCCCCccceecc-ccc
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-----IGTVHDWCESFSTYPRTYDLLHA-WKV 530 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl-----iG~~hdwce~fstYprtyDl~Ha-~~~ 530 (615)
.|+|..+|.|.++.+|.... .+|+-+|- +..+...-++ |+ |-+.+.=.+.++. +.+||+|.. ..+
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~ 160 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGS 160 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHH
T ss_pred cEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcc
Confidence 79999999999999998774 25666653 3555554443 21 2233322333443 899999884 455
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+..+.. -....+|-||-|+|||||.++|..
T Consensus 161 ~~~~~~--~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 161 INELDE--ADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp HTTSCH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCH--HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 552221 136789999999999999999963
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.02 Score=55.74 Aligned_cols=99 Identities=13% Similarity=0.103 Sum_probs=60.0
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcc----c-----ccccccccccCCCCCCccceeccc-c
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----L-----IGTVHDWCESFSTYPRTYDLLHAW-K 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RG----l-----iG~~hdwce~fstYprtyDl~Ha~-~ 529 (615)
..|+|..+|-|.++..|.....- +|+=++- ++-|...-++. . .|-..+.-.+|. +.+||+|.++ .
T Consensus 62 ~~vLDiGcGtG~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~V~~d~~ 137 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLP--DGHFDGILYDTY 137 (236)
T ss_dssp EEEEEECCTTSHHHHHHHTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSC--TTCEEEEEECCC
T ss_pred CeEEEEeccCCHHHHHHHhcCCC--eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccC--CCceEEEEECCc
Confidence 47999999999999999775432 5555554 34554444332 1 122222222343 3799999883 1
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 530 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 530 ~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
.++.-..+.=..+.++-|+-|+|||||.+++-+-
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 1121111111234679999999999999998653
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.083 Score=53.93 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=83.5
Q ss_pred CceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCCCchhHHhh----ccccc----ccccccccCCCCCCccceeccc
Q 007165 458 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYD----RGLIG----TVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 458 ~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~~tL~~iy~----RGliG----~~hdwce~fstYprtyDl~Ha~ 528 (615)
..-..|+|..+|.|.++.+|... |-. .|+=+|-+..+...-+ .|+-+ +-+|..+. ..|..||++.+.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~~~ 239 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNA--EIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV--DYGNDYDLVLLP 239 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTC--EEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS--CCCSCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC--eEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCcEEEEc
Confidence 45578999999999999998744 322 3333343333333222 23322 22343331 356679999998
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcChh---------------------------HHHHHHHHHhhcCccc
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS---------------------------IINYIRKFITALKWDG 581 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~---------------------------~~~~~~~~~~~~~w~~ 581 (615)
+++..+... +...+|-++-|.|+|||.++|-|... ..+++++++..-.++.
T Consensus 240 ~~l~~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~ 317 (335)
T 2r3s_A 240 NFLHHFDVA--TCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSH 317 (335)
T ss_dssp SCGGGSCHH--HHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSE
T ss_pred chhccCCHH--HHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCe
Confidence 888754221 35789999999999999999865320 1566777777777775
Q ss_pred eeeccccccCcCCCCCceEEEEEec
Q 007165 582 WLSEVEPRIDALSSSEERVLIAKKK 606 (615)
Q Consensus 582 ~~~~~~~~~~~~~~~~e~~l~~~k~ 606 (615)
+...+ - .+...+++++++
T Consensus 318 -~~~~~-~-----~~~~~~i~~~~~ 335 (335)
T 2r3s_A 318 -SQLHS-L-----PTTQQQVIVAYK 335 (335)
T ss_dssp -EEEEC-C-----TTSSSEEEEEEC
T ss_pred -eeEEE-C-----CCCceeEEEecC
Confidence 22221 1 123467777653
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.042 Score=57.27 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=58.1
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCCCchhH----Hhhccc---ccccccccccCCCCC-Cccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI----IYDRGL---IGTVHDWCESFSTYP-RTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~~tL~~----iy~RGl---iG~~hdwce~fstYp-rtyDl~Ha~~~fs 532 (615)
..|+|..+|.|.++..+...+. -.|+=++...-+.. +-+.|+ |-+.+.-.+.++ +| .+||+|-+..+..
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~~ 142 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEWMGY 142 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECCCBT
T ss_pred CEEEEeeccCcHHHHHHHHcCC--CEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhc-CCCCcEEEEEEcCchh
Confidence 4799999999999888875542 13333333222322 222343 333333333332 44 7899999877422
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEE
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVI 559 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~i 559 (615)
.+.. .-.+..++-++.|+|+|||.+|
T Consensus 143 ~l~~-~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 143 FLLF-ESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TBTT-TCHHHHHHHHHHHHEEEEEEEE
T ss_pred hccC-HHHHHHHHHHHHhhcCCCcEEE
Confidence 1211 1235678999999999999998
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.029 Score=56.72 Aligned_cols=96 Identities=7% Similarity=0.015 Sum_probs=63.2
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcccc-ccccccccc-C---CCCCCccceeccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLI-GTVHDWCES-F---STYPRTYDLLHAWKVFSEI 534 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGli-G~~hdwce~-f---stYprtyDl~Ha~~~fs~~ 534 (615)
..|+|+.+|-|.++..|...-. .|+=+|. ++-|.+.-++--- .+--+|.+. + ...+.+||+|-++.++..+
T Consensus 47 ~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~ 123 (261)
T 3iv6_A 47 STVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINRF 123 (261)
T ss_dssp CEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGGS
T ss_pred CEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHhC
Confidence 5799999999999999976532 4555553 3555554433210 122233221 1 1225689999999887644
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
... +...++-+|-|.| |||.+++.-
T Consensus 124 ~~~--~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 124 TTE--EARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp CHH--HHHHHHHHHHHHH-TTSEEEEEE
T ss_pred CHH--HHHHHHHHHHHhC-cCcEEEEEe
Confidence 321 3677899999999 999999973
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=93.96 E-value=0.037 Score=51.18 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=43.8
Q ss_pred CCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcChh----------HHHHHHHHHhhcCc
Q 007165 519 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------IINYIRKFITALKW 579 (615)
Q Consensus 519 prtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~----------~~~~~~~~~~~~~w 579 (615)
+.+||+|.+...+..+. -+...+|-|+-|+|||||.+++.+... ..+++.+.+..-.+
T Consensus 61 ~~~fD~V~~~~~l~~~~---~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 61 ESSFDIILSGLVPGSTT---LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp SSCEEEEEECCSTTCCC---CCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred CCCEeEEEECChhhhcc---cCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 47899999988777441 246899999999999999999964321 15677777776555
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.0091 Score=55.21 Aligned_cols=97 Identities=13% Similarity=0.163 Sum_probs=62.0
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----cccc---c-ccccccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGLI---G-TVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGli---G-~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
.+|+|+.+|.|.++.+|...+. -+|+-++- +..+...-+ .|+- = +..|+.+..+..+.+||+|.++..|
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~ 110 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 110 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence 4799999999999998876653 24555554 234433322 2321 1 2235544334455779999998777
Q ss_pred cccccCCCChhhhhhhhc--ccccCCcEEEEEcCh
Q 007165 532 SEIEERGCSFEDLLIEMD--RMLRPEGFVIIRDKS 564 (615)
Q Consensus 532 s~~~~~~c~~~~i~~Emd--RilRp~g~~iird~~ 564 (615)
.. ....+++-++- |+|+|||.+++....
T Consensus 111 ~~-----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 111 AK-----ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp HH-----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred Cc-----chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 41 12455565665 999999999997544
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.016 Score=56.49 Aligned_cols=96 Identities=14% Similarity=0.013 Sum_probs=61.8
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcc----cccccccccccCC---CCC--Cccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----LIGTVHDWCESFS---TYP--RTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RG----liG~~hdwce~fs---tYp--rtyDl~Ha~~~ 530 (615)
..|+|+.+|.|.++..|...-. +|+-+|- +.-+...-++- +-=+-.|..+ ++ .++ ..||+|.+..+
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~d~v~~~~~ 133 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLV-PEQAAQIHSEIGDANIYMRTG 133 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTC-HHHHHHHHHHHCSCEEEEESS
T ss_pred CeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccc-cccccccccccCccEEEEcch
Confidence 4699999999999998875422 5555553 34444443332 1111122222 11 111 24999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+..+.. -+...+|-|+-|+|+|||.++|-|
T Consensus 134 ~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 134 FHHIPV--EKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp STTSCG--GGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhcCCH--HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 885432 247899999999999999988875
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.037 Score=57.40 Aligned_cols=102 Identities=23% Similarity=0.355 Sum_probs=66.0
Q ss_pred cCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCCCchhHHhh----cccc----cccccccccCCCCCCccceec
Q 007165 456 QKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYD----RGLI----GTVHDWCESFSTYPRTYDLLH 526 (615)
Q Consensus 456 ~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~~tL~~iy~----RGli----G~~hdwce~fstYprtyDl~H 526 (615)
....-..|+|..+|.|.++.+|... |-+ .++=+|-+..+...-+ .|+- =+-+|..++ .|..||++.
T Consensus 180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~D~v~ 254 (360)
T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARRAPHV--SATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP---LPRKADAII 254 (360)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC---CSSCEEEEE
T ss_pred CCccCcEEEEeCCcCcHHHHHHHHhCCCC--EEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCC---CCCCccEEE
Confidence 3445678999999999999988643 322 2222332444444332 2332 233455443 566799999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 527 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 527 a~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
+.+++..+... ....++-++-|.|+|||.++|-|..
T Consensus 255 ~~~vl~~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 255 LSFVLLNWPDH--DAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EESCGGGSCHH--HHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EcccccCCCHH--HHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 98888644322 2357999999999999999987654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=93.37 E-value=0.085 Score=50.87 Aligned_cols=116 Identities=12% Similarity=0.197 Sum_probs=72.5
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCCC-CchhHHhh----ccc--cccc-ccccccCCC-C-CCccceecccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYD----RGL--IGTV-HDWCESFST-Y-PRTYDLLHAWK 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-~tL~~iy~----RGl--iG~~-hdwce~fst-Y-prtyDl~Ha~~ 529 (615)
..|+|+.+|.|.++.+|... |-+ ||+=++-. +-+...-. .|+ +-+. .|..+ +.. + +.+||.|+..
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~~--~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~- 115 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPDI--NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLN- 115 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTS--EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEE-
T ss_pred ceEEEEecCCCHHHHHHHHHCCCC--CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEE-
Confidence 35999999999999998643 332 56666643 44443322 344 2222 23332 221 1 4689988754
Q ss_pred ccccc------ccCCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhhcCccc
Q 007165 530 VFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDG 581 (615)
Q Consensus 530 ~fs~~------~~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~~~w~~ 581 (615)
|+.- .+++-....++-|+-|+|+|||.+++. |..+..+.+...+....|+.
T Consensus 116 -~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~ 173 (213)
T 2fca_A 116 -FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLL 173 (213)
T ss_dssp -SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred -CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc
Confidence 2211 123333578899999999999999987 56667777777776666654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.05 Score=53.40 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=60.5
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc-----ccccccccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-----IGTVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl-----iG~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
..|+|..+|.|.+|..|.+... -+|+=++- |.-+...-++ |+ .|-..+....|.. .+||.|..+..
T Consensus 62 ~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~FD~i~~D~~ 137 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYDTY 137 (236)
T ss_dssp EEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEECCC
T ss_pred CeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccc--cCCceEEEeee
Confidence 4699999999999999987642 13333332 3444443332 21 2222333445543 68999987766
Q ss_pred ccccc-cCCCChhhhhhhhcccccCCcEEEEE
Q 007165 531 FSEIE-ERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 531 fs~~~-~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.+... .+.=+.+.++-|+-|+|||||.+++-
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 55221 11123567888999999999999885
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.022 Score=58.85 Aligned_cols=99 Identities=14% Similarity=0.074 Sum_probs=53.7
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCCCCchhHH-hh-ccc--ccccccccccCCCCCCccceecccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKII-YD-RGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 535 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~~tL~~i-y~-RGl--iG~~hdwce~fstYprtyDl~Ha~~~fs~~~ 535 (615)
..|+|..||-|||+..|... .|.-+-+-+..+++.+-.+ .+ .|. +=+..+ .+.+.--+.+||+|.++..|+ ..
T Consensus 84 ~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~D~~~l~~~~fD~V~sd~~~~-~g 161 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-VDVFFIPPERCDTLLCDIGES-SP 161 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-CCTTTSCCCCCSEEEECCCCC-CS
T ss_pred CEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-cccccCCcCCCCEEEECCccc-cC
Confidence 57999999999999888766 2333222100011111000 00 010 111111 122222256899999987765 11
Q ss_pred cC---CCChhhhhhhhcccccCCcEEEEE
Q 007165 536 ER---GCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 536 ~~---~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.. .-....+|-++-|+|+|||.+++.
T Consensus 162 ~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 162 NPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 00 000124788899999999999995
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=93.20 E-value=0.025 Score=54.15 Aligned_cols=115 Identities=10% Similarity=0.180 Sum_probs=73.8
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc-cc--------------ccccccccccCCCCC----C
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR-GL--------------IGTVHDWCESFSTYP----R 520 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R-Gl--------------iG~~hdwce~fstYp----r 520 (615)
..|+|..+|-|.++..|.+... +|+=+|- +.-|...-+| ++ ..-..=.|-.+.+.| .
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 100 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 100 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence 4699999999999999987532 5666663 3556555554 11 011111233334444 6
Q ss_pred ccceecccccccccccCCCChhhhhhhhcccccCCcE--EEEEcCh----------hHHHHHHHHHhhcCccc
Q 007165 521 TYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGF--VIIRDKS----------SIINYIRKFITALKWDG 581 (615)
Q Consensus 521 tyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~--~iird~~----------~~~~~~~~~~~~~~w~~ 581 (615)
+||+|-+.+.|..+.. -....++-||-|+|||||. ++.-+.. -..++++.++.. .|++
T Consensus 101 ~fD~v~~~~~l~~l~~--~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i 170 (203)
T 1pjz_A 101 HCAAFYDRAAMIALPA--DMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEV 170 (203)
T ss_dssp SEEEEEEESCGGGSCH--HHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEE
T ss_pred CEEEEEECcchhhCCH--HHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEE
Confidence 8999998877764432 1345678999999999998 3332221 135788888887 7765
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.026 Score=52.90 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=61.7
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----ccc--ccccc-cccccCCCC-CCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL--IGTVH-DWCESFSTY-PRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGl--iG~~h-dwce~fstY-prtyDl~Ha~~~f 531 (615)
..|+|+.+|.|+++.++...+.. .|+=+|- +..+...-+ .|+ +-+.+ |..+....+ +.+||+|-++..|
T Consensus 46 ~~vLDlgcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALSRGAA--SVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS--EEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CEEEEeCCCcCHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 46999999999999866544421 3444443 244443322 243 22222 222221112 5799999998877
Q ss_pred cccccCCCChhhhhhhhcc--cccCCcEEEEEcC
Q 007165 532 SEIEERGCSFEDLLIEMDR--MLRPEGFVIIRDK 563 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdR--ilRp~g~~iird~ 563 (615)
..... .+..++-++-| +|+|||.+++...
T Consensus 124 ~~~~~---~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 124 NVDSA---DVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp TSCHH---HHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred Ccchh---hHHHHHHHHHhcCccCCCeEEEEEec
Confidence 63212 37888999988 9999999999754
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.98 E-value=0.1 Score=53.29 Aligned_cols=94 Identities=20% Similarity=0.242 Sum_probs=55.6
Q ss_pred CcEEEEecCCC-CC-CCCCCceEEEeccccc---c----------------cccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 262 PSTLGVLGTKR-LP-YPSRSFELAHCSRCRI---D----------------WLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 262 ~~~~~v~d~~~-Lp-fpd~sFDlV~~s~~~l---~----------------~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.+.+.++|... ++ +++++||+|+++---. . |+.....++.++.|+|||||.+++.....
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 35677788544 32 4678999999863111 1 11122457789999999999999987543
Q ss_pred CCC-ChhH----HHHHHHHHHHHhhcceEEEEeeCceEEEeccC
Q 007165 321 YAH-DPEN----RRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 359 (615)
Q Consensus 321 ~~~-~~e~----~~~w~~l~~La~~l~W~l~~~~~~~aiwqKP~ 359 (615)
... .... ......+..+++...|... ...||.|+.
T Consensus 101 ~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~----~~iiW~K~~ 140 (297)
T 2zig_A 101 AVARRRFGRHLVFPLHADIQVRCRKLGFDNL----NPIIWHKHT 140 (297)
T ss_dssp EEECC----EEEECHHHHHHHHHHHTTCEEE----EEEEEECC-
T ss_pred ccccccCCcccccccHHHHHHHHHHcCCeee----ccEEEeCCC
Confidence 210 0000 0112345566667778655 356899875
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=92.90 E-value=0.028 Score=54.18 Aligned_cols=90 Identities=13% Similarity=0.225 Sum_probs=57.8
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc-----ccccccccccccCCCCCCccceeccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR-----GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 534 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R-----GliG~~hdwce~fstYprtyDl~Ha~~~fs~~ 534 (615)
..|+|+.+|.|.++..|...- -+|+=++- +..+...-++ .+-=+..|..+.+. -+.+||+|.+++.+..+
T Consensus 72 ~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~~ 147 (231)
T 1vbf_A 72 QKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWATAPTL 147 (231)
T ss_dssp CEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSBBSSC
T ss_pred CEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCCCccEEEECCcHHHH
Confidence 479999999999999987543 24444443 3444444333 11112234433222 23689999998877633
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
. -|+-|+|+|||.+++-...
T Consensus 148 ~----------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 148 L----------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp C----------HHHHHTEEEEEEEEEEECS
T ss_pred H----------HHHHHHcCCCcEEEEEEcC
Confidence 2 3788999999999997543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=92.84 E-value=0.36 Score=45.83 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=70.0
Q ss_pred eeeeeccccchhHHhhhcCCC--cEEEEeccCCCCCchhHHhhcccccccccccccCCC-------CC----Cccceecc
Q 007165 461 RNVMDMNSNLGGFAAALKDKD--VWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFST-------YP----RTYDLLHA 527 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~--vwvmnvvp~~~~~tL~~iy~RGliG~~hdwce~fst-------Yp----rtyDl~Ha 527 (615)
.+|+|+.||-|+++..|.... |.-+-+-|... + .|+-=+-.|-.+. .+ .+ .+||+|-+
T Consensus 27 ~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~---~-----~~v~~~~~D~~~~-~~~~~~~~~~~~~~~~~~D~Vls 97 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE---I-----AGVRFIRCDIFKE-TIFDDIDRALREEGIEKVDDVVS 97 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC---C-----TTCEEEECCTTSS-SHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CEEEEEeecCCHHHHHHHHcCCcEEEEecccccc---C-----CCeEEEEccccCH-HHHHHHHHHhhcccCCcceEEec
Confidence 589999999999999998763 33333333211 1 1221112232221 10 01 38999988
Q ss_pred cccccccc-------cCCCChhhhhhhhcccccCCcEEEEEc--ChhHHHHHHHHHhhcCccceeeccccccCcCCCCCc
Q 007165 528 WKVFSEIE-------ERGCSFEDLLIEMDRMLRPEGFVIIRD--KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEE 598 (615)
Q Consensus 528 ~~~fs~~~-------~~~c~~~~i~~EmdRilRp~g~~iird--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e 598 (615)
+.-..... ...-..+.++-++-|+|||||.+++-- ..+ ...+...++.. ++. +....+.. +-+.+.|
T Consensus 98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~-~~~~~~~l~~~-F~~-v~~~kP~a-sR~~s~E 173 (191)
T 3dou_A 98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM-TNDFIAIWRKN-FSS-YKISKPPA-SRGSSSE 173 (191)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH-HHHHHHHHGGG-EEE-EEEECC-------CCE
T ss_pred CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC-HHHHHHHHHHh-cCE-EEEECCCC-ccCCCce
Confidence 75332100 000113567888899999999998742 222 34444445442 432 22322222 1224689
Q ss_pred eEEEEEec
Q 007165 599 RVLIAKKK 606 (615)
Q Consensus 599 ~~l~~~k~ 606 (615)
..+||++.
T Consensus 174 ~y~v~~~~ 181 (191)
T 3dou_A 174 IYIMFFGF 181 (191)
T ss_dssp EEEEEEEE
T ss_pred EEEEEeee
Confidence 99999763
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.041 Score=53.33 Aligned_cols=93 Identities=14% Similarity=0.231 Sum_probs=61.1
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc----cc---ccc-cccccccCCCC--CCccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GL---IGT-VHDWCESFSTY--PRTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R----Gl---iG~-~hdwce~fstY--prtyDl~Ha~ 528 (615)
.+|+|+.+|.|+++.+|... |- -+|+-++- +..+...-++ |+ |-+ ..|..+..... +.+||+|-++
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALPE--ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCTT--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 48999999999999888643 21 24555553 3455444333 43 222 22443322222 4789999877
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
..++ ....++-++-|.|+|||.+++.|
T Consensus 134 ~~~~-------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 134 AAKG-------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp GGGS-------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 6544 46788899999999999999975
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.033 Score=54.41 Aligned_cols=128 Identities=16% Similarity=0.234 Sum_probs=71.7
Q ss_pred eeeeeccccchhHHhhhcCC-C-cEEEEeccCCC-CCchhHHhhc----cccc---cc-cc----------------ccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIYDR----GLIG---TV-HD----------------WCE 513 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~-vwvmnvvp~~~-~~tL~~iy~R----GliG---~~-hd----------------wce 513 (615)
.+|+|+.+|.|.+++.|... + .. +|+-++- +..+...-++ |+-. +. -| |=.
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPEDG--KILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTTC--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 47999999999999888633 1 11 3333332 2333332222 3311 11 11 211
Q ss_pred cCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcC------------hhHHHHHHHHHhhc----
Q 007165 514 SFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK------------SSIINYIRKFITAL---- 577 (615)
Q Consensus 514 ~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~------------~~~~~~~~~~~~~~---- 577 (615)
.|++-..+||+|..+.... ....++-++-|+|||||.+++.+- ......++.....+
T Consensus 140 ~f~~~~~~fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDADKE-------NYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDS 212 (239)
T ss_dssp TTCCSTTCEEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred cccCCCCCcCEEEEeCCHH-------HHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCC
Confidence 2221106899998775332 255788899999999999999761 22334444444433
Q ss_pred CccceeeccccccCcCCCCCceEEEEEecc
Q 007165 578 KWDGWLSEVEPRIDALSSSEERVLIAKKKL 607 (615)
Q Consensus 578 ~w~~~~~~~~~~~~~~~~~~e~~l~~~k~~ 607 (615)
++++. .+ |. .+.+.+++|++
T Consensus 213 ~~~~~--~~-----p~---~~g~~~~~~~~ 232 (239)
T 2hnk_A 213 LVDVS--LV-----PI---ADGVSLVRKRL 232 (239)
T ss_dssp TEEEE--EE-----CS---TTCEEEEEECC
T ss_pred CeEEE--EE-----Ec---CCceEeeeehh
Confidence 34431 11 22 35699999976
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.051 Score=59.62 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=61.5
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCCCCCch----hHHhhccc---ccccc-cccccCCCCCCccceecccccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARL----KIIYDRGL---IGTVH-DWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~~tL----~~iy~RGl---iG~~h-dwce~fstYprtyDl~Ha~~~f 531 (615)
-..|+|..+|-|.++..|...+.. .|+=++...-+ ..+.+.|| |-+.+ |+-+ + .+|..||+|-++.++
T Consensus 159 ~~~VLDiGcGtG~la~~la~~~~~--~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 159 DKIVLDVGCGSGILSFFAAQAGAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE-V-SLPEQVDIIISEPMG 234 (480)
T ss_dssp TCEEEEESCSTTHHHHHHHHTTCS--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTT-C-CCSSCEEEEECCCCH
T ss_pred CCEEEEecCcccHHHHHHHHcCCC--EEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhh-C-ccCCCeEEEEEeCch
Confidence 358999999999999888765431 33334432222 22444465 33333 3333 2 357899999998775
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEE
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
..+... ++..++.++-|+|+|||.+++
T Consensus 235 ~~~~~e--~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 235 YMLFNE--RMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHTCH--HHHHHHHHGGGGEEEEEEEES
T ss_pred HhcCcH--HHHHHHHHHHHhcCCCCEEEE
Confidence 533211 367788899999999999984
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.026 Score=53.57 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=57.3
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc--cccc-ccccccCCCCCCccceeccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL--IGTV-HDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl--iG~~-hdwce~fstYprtyDl~Ha~~~ 530 (615)
.-..|+|+.+|.|.+++.|.... -+|+-++- ++.+...-++ |+ +-+. .|..+.+. -..+||+|.+++.
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~~~~ 152 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ-ARAPFDAIIVTAA 152 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGCCEEEEEESSB
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc-cCCCccEEEEccc
Confidence 34579999999999999887652 24444443 2444443332 33 2222 23333222 1468999999987
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
+..+.. ++-|.|+|||.+++--.
T Consensus 153 ~~~~~~----------~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 153 PPEIPT----------ALMTQLDEGGILVLPVG 175 (210)
T ss_dssp CSSCCT----------HHHHTEEEEEEEEEEEC
T ss_pred hhhhhH----------HHHHhcccCcEEEEEEc
Confidence 764321 67899999999999644
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.058 Score=50.39 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=52.6
Q ss_pred eeeeeccccchhHHhhhcCC-------------CcEEEEeccCCCCCchhHHhhccccccccccccc-C-----CCC-CC
Q 007165 461 RNVMDMNSNLGGFAAALKDK-------------DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCES-F-----STY-PR 520 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-------------~vwvmnvvp~~~~~tL~~iy~RGliG~~hdwce~-f-----stY-pr 520 (615)
.+|+|+.+|-|+++.+|... .|..+-+-|....+...++ + -.|..+. + ... ..
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~-~------~~d~~~~~~~~~~~~~~~~~ 96 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL-C------PADVTDPRTSQRILEVLPGR 96 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEE-C------SCCTTSHHHHHHHHHHSGGG
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEE-E------eccCCCHHHHHHHHHhcCCC
Confidence 58999999999999888643 2444433332111100000 0 1111110 0 001 25
Q ss_pred ccceecccccccccc----cC---CCChhhhhhhhcccccCCcEEEEEc
Q 007165 521 TYDLLHAWKVFSEIE----ER---GCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 521 tyDl~Ha~~~fs~~~----~~---~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+||+|-++..+.... .. ......++-|+-|+|||||.+++.+
T Consensus 97 ~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 97 RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 899998876443100 00 0011478889999999999999984
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.066 Score=55.70 Aligned_cols=101 Identities=15% Similarity=0.301 Sum_probs=64.4
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCCCchhHHhhc----cccc----ccccccccCCCCCCcccee
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYDR----GLIG----TVHDWCESFSTYPRTYDLL 525 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~~tL~~iy~R----GliG----~~hdwce~fstYprtyDl~ 525 (615)
+....-..|+|..+|.|.++.+|... |-. +|+=+|-+..+...-++ |+-+ +-+|..+. .+|. +|++
T Consensus 186 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~-~D~v 260 (359)
T 1x19_A 186 AKLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE--SYPE-ADAV 260 (359)
T ss_dssp CCCTTCCEEEEESCTTCHHHHHHHHHCTTC--EEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CCCC-CSEE
T ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCC--eEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccC--CCCC-CCEE
Confidence 34556789999999999999999743 211 12222323444443322 4422 23344332 2333 4999
Q ss_pred cccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 526 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 526 Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
.+..++..+... ....+|-++-|+|+|||.++|-|
T Consensus 261 ~~~~vlh~~~d~--~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 261 LFCRILYSANEQ--LSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp EEESCGGGSCHH--HHHHHHHHHHTTCCTTCEEEEEE
T ss_pred EEechhccCCHH--HHHHHHHHHHHhcCCCCEEEEEe
Confidence 999888754321 26789999999999999998876
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=92.49 E-value=0.038 Score=55.01 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=45.0
Q ss_pred CccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh----------------hHHHHHHHHHhhcCccc
Q 007165 520 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS----------------SIINYIRKFITALKWDG 581 (615)
Q Consensus 520 rtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~----------------~~~~~~~~~~~~~~w~~ 581 (615)
-+||+|-+..++..+..+.=++..+|-||=|+|+|||.+|+.+.. -..+++.+++..-..+.
T Consensus 155 ~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i 232 (263)
T 2a14_A 155 PLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDI 232 (263)
T ss_dssp CCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEE
Confidence 489999999988743222123677899999999999999999521 13567777777666654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.051 Score=53.11 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=56.6
Q ss_pred eeeeeccccchhHHhhhcCC-C-cEEEEeccCCC-CCchhHHhh----cccc---ccc-ccccccCCCCC-----Cccce
Q 007165 461 RNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIYD----RGLI---GTV-HDWCESFSTYP-----RTYDL 524 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~-vwvmnvvp~~~-~~tL~~iy~----RGli---G~~-hdwce~fstYp-----rtyDl 524 (615)
++|+|+.+|.|.++.+|... + - -.|+-++- +..+.+.-+ .|+- -+. -|..+.+...| .+||+
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPD--GQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTT--CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 58999999999999888753 2 1 13333332 233433322 2431 111 23333222222 68999
Q ss_pred ecccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 525 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 525 ~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
|..+.... +...++-++-|+|||||.+|+.|
T Consensus 152 V~~d~~~~-------~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 152 IFIDADKR-------NYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEECSCGG-------GHHHHHHHHHHTEEEEEEEEEEC
T ss_pred EEECCCHH-------HHHHHHHHHHHHcCCCeEEEEeC
Confidence 98765321 35678888999999999999964
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.075 Score=53.09 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=73.8
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhhcc-c-------------------ccccccccccCCCCC
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG-L-------------------IGTVHDWCESFSTYP 519 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~RG-l-------------------iG~~hdwce~fstYp 519 (615)
..|+|..+|-|.++..|.+.-. +|+=+|-. .-+-....+- + -+-..=.|-.+.+.|
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 4699999999999999987643 57777643 4444443321 1 011111222233332
Q ss_pred ----CccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEc---------C---hhHHHHHHHHHhhcCccc
Q 007165 520 ----RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD---------K---SSIINYIRKFITALKWDG 581 (615)
Q Consensus 520 ----rtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird---------~---~~~~~~~~~~~~~~~w~~ 581 (615)
.+||+|-+.+.|..+.. .....++-||-|+|||||.+++-. . .-..++++.++.. .|++
T Consensus 147 ~~~~~~FD~V~~~~~l~~l~~--~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v 221 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAINP--GDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSM 221 (252)
T ss_dssp GGCCCCEEEEEESSSTTTSCG--GGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred cccCCCEEEEEEhhhhhhCCH--HHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEE
Confidence 68999998888875532 245678999999999999986321 0 1135778888876 4776
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.054 Score=51.59 Aligned_cols=92 Identities=18% Similarity=0.090 Sum_probs=58.1
Q ss_pred eeeeeccccchhHHhhhcCC-C-cEEEEeccCCC-CCchhHHh----hcccc---ccc-ccccccCCCCCCccceecccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIY----DRGLI---GTV-HDWCESFSTYPRTYDLLHAWK 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~-vwvmnvvp~~~-~~tL~~iy----~RGli---G~~-hdwce~fstYprtyDl~Ha~~ 529 (615)
++|+|+.+|.|.++.+|... + - -.|+-++- +..+.+.- ..|+- -+. -|..+..+..+. ||+|..+.
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISIS--SRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTT--CEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CEEEEEcCCccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 57999999999999888654 2 1 13333332 23333322 22432 222 244443344566 99998763
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 530 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 530 ~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
- .-....++-++-|+|+|||.+|+.|
T Consensus 135 ~-------~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 D-------VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp T-------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred C-------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 2 1346788899999999999999965
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.28 Score=48.34 Aligned_cols=98 Identities=11% Similarity=0.129 Sum_probs=56.4
Q ss_pred eeeeeccccchhHHhhhcCC--C-cEEEEeccCCC----CCchhHHhhc----cc---ccccc-c-cc-ccCCCCCCccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK--D-VWVMNVAPVRM----SARLKIIYDR----GL---IGTVH-D-WC-ESFSTYPRTYD 523 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~-vwvmnvvp~~~----~~tL~~iy~R----Gl---iG~~h-d-wc-e~fstYprtyD 523 (615)
..|+|+.+|-|.++..|.+. | .=|.-|=+... |+.+...-++ |+ |-+.+ | .. +..+--+.+||
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD 124 (275)
T 3bkx_A 45 EKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFD 124 (275)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCCS
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCEE
Confidence 57999999999999888753 2 32222222211 2355543322 32 22222 2 21 11111247999
Q ss_pred eecccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 524 LLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 524 l~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+|++.+++..+.. ...++-.+.++++|||.+++.+
T Consensus 125 ~v~~~~~l~~~~~----~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 125 RVVLAHSLWYFAS----ANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp EEEEESCGGGSSC----HHHHHHHHHHHTTTCSEEEEEE
T ss_pred EEEEccchhhCCC----HHHHHHHHHHHhCCCCEEEEEE
Confidence 9999998875432 3445555566666799999964
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.036 Score=56.19 Aligned_cols=45 Identities=16% Similarity=0.312 Sum_probs=35.0
Q ss_pred CCCccceecccccccccc--cCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 518 YPRTYDLLHAWKVFSEIE--ERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 518 YprtyDl~Ha~~~fs~~~--~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
.+.+||+|.+.+++..+. ...-.+..++-+|-|+|||||.+||..
T Consensus 174 ~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 174 QTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp CCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 468999999999874221 112357889999999999999999963
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=0.12 Score=52.41 Aligned_cols=130 Identities=14% Similarity=0.188 Sum_probs=84.0
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----ccc---cc-ccccccccCCCCCCcc---ceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL---IG-TVHDWCESFSTYPRTY---DLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGl---iG-~~hdwce~fstYprty---Dl~Ha~ 528 (615)
.+|+|+.+|.|.++.+|...|-+ +|+=+|- +..|.+.-+ .|+ +- +-.||.+++. .+| |+|-++
T Consensus 125 ~~vLDlG~GsG~~~~~la~~~~~--~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~---~~f~~~D~Ivsn 199 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK---EKFASIEMILSN 199 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG---GGTTTCCEEEEC
T ss_pred CEEEEEeCchhHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc---cccCCCCEEEEc
Confidence 36999999999999998755433 4454553 345544332 244 22 2357776553 579 999887
Q ss_pred ccccccc---------------cCCCChhhhhhhhc-ccccCCcEEEEEcChhHHHHHHHHHhhcCccceeeccccccCc
Q 007165 529 KVFSEIE---------------ERGCSFEDLLIEMD-RMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDA 592 (615)
Q Consensus 529 ~~fs~~~---------------~~~c~~~~i~~Emd-RilRp~g~~iird~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 592 (615)
--+.... -..++-.+++-++= +.|+|||++++--..+--+.|++++... ++ . .|
T Consensus 200 PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~--~~--~-~D----- 269 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT--VF--L-KD----- 269 (284)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC--EE--E-EC-----
T ss_pred CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC--Ce--e-cc-----
Confidence 3222110 01234457888999 9999999999976666677788877765 33 1 11
Q ss_pred CCCCCceEEEEEec
Q 007165 593 LSSSEERVLIAKKK 606 (615)
Q Consensus 593 ~~~~~e~~l~~~k~ 606 (615)
-.+.++++++.++
T Consensus 270 -~~g~~R~~~~~~k 282 (284)
T 1nv8_A 270 -SAGKYRFLLLNRR 282 (284)
T ss_dssp -TTSSEEEEEEECC
T ss_pred -cCCCceEEEEEEc
Confidence 2467899998875
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=92.18 E-value=0.026 Score=51.27 Aligned_cols=94 Identities=10% Similarity=0.158 Sum_probs=57.6
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhh----ccc-ccccc-cccccCCCCC---Cccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL-IGTVH-DWCESFSTYP---RTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~----RGl-iG~~h-dwce~fstYp---rtyDl~Ha~~~ 530 (615)
..|+|+.+|.|.++.+|..... +|+-++-. +-+...-+ .|+ +-+++ |+.+..+..+ .+||+|.++..
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 119 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence 4799999999999988875422 25555542 33333222 232 12222 3333222222 37999999987
Q ss_pred ccccccCCCChhhhhhhhc--ccccCCcEEEEEcC
Q 007165 531 FSEIEERGCSFEDLLIEMD--RMLRPEGFVIIRDK 563 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~Emd--RilRp~g~~iird~ 563 (615)
|. . ...+++-++- |+|+|||.+++...
T Consensus 120 ~~---~---~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 120 YA---M---DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp TT---S---CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred Cc---h---hHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 75 1 2455666666 99999999999644
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.048 Score=56.35 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=57.8
Q ss_pred eeeeeccccchhHHhhhcC-CCcEEEEeccCCC-CCchhHHhh----cccccccccccccCCCC-CCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIYD----RGLIGTVHDWCESFSTY-PRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~-~~vwvmnvvp~~~-~~tL~~iy~----RGliG~~hdwce~fstY-prtyDl~Ha~~~fs~ 533 (615)
..|+|..+|-||++|.+.. .+- -.|+=++- +.-+...-+ .|+ .-..--|.....+ ..+||++...++-
T Consensus 124 ~rVLDIGcG~G~~ta~~lA~~~g--a~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~~-- 198 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAALA-- 198 (298)
T ss_dssp CEEEEECCCSSCHHHHHHHHTTC--CEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTTC--
T ss_pred CEEEEECCCccHHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCCc--
Confidence 5899999999998866532 121 13444442 234433322 255 2111112212223 3799999865541
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
-+.+.++-|+-|.|||||.+++++..
T Consensus 199 -----~d~~~~l~el~r~LkPGG~Lvv~~~~ 224 (298)
T 3fpf_A 199 -----EPKRRVFRNIHRYVDTETRIIYRTYT 224 (298)
T ss_dssp -----SCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred -----cCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence 24678999999999999999999854
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=0.047 Score=54.85 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=58.8
Q ss_pred eeeeccccchhHHhhhcCC---CcEEEEeccCCC-CCchhHHhh----cccccccccccccCCCCC-Cccceeccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDK---DVWVMNVAPVRM-SARLKIIYD----RGLIGTVHDWCESFSTYP-RTYDLLHAWKVFS 532 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~---~vwvmnvvp~~~-~~tL~~iy~----RGliG~~hdwce~fstYp-rtyDl~Ha~~~fs 532 (615)
+|+|..+|.|.++.+|... +-+ +|+=+|- +.-|...-+ .|+..-..=-|.-+..+| ..||++-+..++.
T Consensus 73 ~vLDlGcGtG~~~~~la~~~~~~~~--~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~ 150 (261)
T 4gek_A 73 QVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 150 (261)
T ss_dssp EEEEETCTTTHHHHHHHHTCCSSSC--EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGG
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCC--EEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeeee
Confidence 6999999999998888532 322 3444442 233433222 243221111122222222 4699998887766
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
.+... +...+|-||-|+|+|||.+||.|.
T Consensus 151 ~~~~~--~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 151 FLEPS--ERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp GSCHH--HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecCch--hHhHHHHHHHHHcCCCcEEEEEec
Confidence 43211 235689999999999999999864
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=91.92 E-value=0.23 Score=49.42 Aligned_cols=120 Identities=9% Similarity=0.101 Sum_probs=72.1
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhh-------ccc---ccccccccccC-C-----CC-C
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD-------RGL---IGTVHDWCESF-S-----TY-P 519 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~-------RGl---iG~~hdwce~f-s-----tY-p 519 (615)
.-.+|+|+.+|-|.++..|... |- .+|+=++- +..+...-+ .|+ +-+++.=.+.+ . .+ +
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEK--AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTT--EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 3458999999999998877643 22 23444442 222222111 233 22333222222 1 12 4
Q ss_pred Cccceeccccccccc--------------ccCCCChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCccc
Q 007165 520 RTYDLLHAWKVFSEI--------------EERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDG 581 (615)
Q Consensus 520 rtyDl~Ha~~~fs~~--------------~~~~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~ 581 (615)
.+||+|-++--|... ....+.+++++-++-|+|+|||.+++--..+-+.++...++.- |..
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG 188 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence 789999998444311 1223678999999999999999998876666777777777763 664
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=91.88 E-value=0.15 Score=49.27 Aligned_cols=103 Identities=12% Similarity=0.041 Sum_probs=67.8
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc---cc-ccccccccC-CCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL---IG-TVHDWCESF-STYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl---iG-~~hdwce~f-stYprtyDl~Ha~~~ 530 (615)
..|+|+.+|.|.++.+|... ..+|+-++- +..+...-++ |+ +- +..|..+.+ . +.+||++-++-
T Consensus 93 ~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~- 166 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP--EGIFHAAFVDV- 166 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC--TTCBSEEEECS-
T ss_pred CEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC--CCcccEEEECC-
Confidence 47999999999999888765 235666663 3555554443 33 11 223444443 2 36899987531
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEcC-hhHHHHHHHHHhhc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITAL 577 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~-~~~~~~~~~~~~~~ 577 (615)
-+...++-++-|+|+|||.+++-.. .+-+.++...+...
T Consensus 167 --------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 206 (248)
T 2yvl_A 167 --------REPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY 206 (248)
T ss_dssp --------SCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred --------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence 1356788999999999999999766 44566666665543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=91.87 E-value=0.18 Score=51.98 Aligned_cols=90 Identities=10% Similarity=-0.017 Sum_probs=54.8
Q ss_pred CCCeEEEECC------CCchHHHH-HhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEe
Q 007165 215 NIRNVLDVGC------GVASFGAY-LLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGC------GtG~~a~~-L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~ 285 (615)
...+|||+|+ -.|++... +... .|+++|+.+.... .+ .+.++|...+. ..+.||+|++
T Consensus 109 ~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~sd-----------a~-~~IqGD~~~~~-~~~k~DLVIS 175 (344)
T 3r24_A 109 YNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSD-----------AD-STLIGDCATVH-TANKWDLIIS 175 (344)
T ss_dssp TTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBCS-----------SS-EEEESCGGGEE-ESSCEEEEEE
T ss_pred CCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccccC-----------CC-eEEEccccccc-cCCCCCEEEe
Confidence 4578999996 56664322 3332 5677777765431 12 45778855433 2478999997
Q ss_pred ccccccc-----ccc-----h-HHHHHHHHhccCCCeEEEEEcC
Q 007165 286 SRCRIDW-----LQR-----D-GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 286 s~~~l~~-----~~d-----~-~~~L~ei~RvLkPGG~Lvis~P 318 (615)
-. +-.- .+. . +.++.=+.++|+|||.|++-..
T Consensus 176 DM-APNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVF 218 (344)
T 3r24_A 176 DM-YDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 218 (344)
T ss_dssp CC-CCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cC-CCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence 32 1111 111 2 3456667789999999998763
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.12 Score=50.81 Aligned_cols=113 Identities=15% Similarity=0.199 Sum_probs=66.5
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCCC-CchhHHhh----------ccc--ccccc-cccccCC--CCCCccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYD----------RGL--IGTVH-DWCESFS--TYPRTYD 523 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-~tL~~iy~----------RGl--iG~~h-dwce~fs--tYprtyD 523 (615)
..|+|+.+|.|.|+.+|... |-+ ||+=++-. .-|...-+ .|+ |-+.+ |.-+.++ --+.+||
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~~--~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPDT--LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTTS--EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CeEEEEccCCcHHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 46999999999999998754 332 44444432 33322211 122 11222 2222122 1247899
Q ss_pred eeccccccccc------ccCCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhhc
Q 007165 524 LLHAWKVFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITAL 577 (615)
Q Consensus 524 l~Ha~~~fs~~------~~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~~ 577 (615)
+|... |..- .++|.....+|-|+-|+|+|||.+++. |..+..+.+.+.+..-
T Consensus 126 ~v~~~--~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~ 184 (235)
T 3ckk_A 126 KMFFL--FPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEH 184 (235)
T ss_dssp EEEEE--SCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred EEEEe--CCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence 98643 3311 134455578999999999999999986 7777777777766654
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=91.83 E-value=0.26 Score=50.17 Aligned_cols=37 Identities=16% Similarity=0.046 Sum_probs=26.5
Q ss_pred CCCeEEEECCCCchHHHHHhc--CCCccccCChhchhHH
Q 007165 215 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHEN 251 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~--~~V~gvdis~~Dls~a 251 (615)
++..|||++||+|+++..++. ++++|+|+++..+..+
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a 273 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLA 273 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 346899999999998888764 4667776665544333
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.83 E-value=0.16 Score=52.57 Aligned_cols=94 Identities=15% Similarity=0.269 Sum_probs=57.3
Q ss_pred cEEEEecCCC-CC-CCCCCceEEEeccc--cc-----------ccccchHHHHHHHHhccCCCeEEEEEcCCCCCCCh--
Q 007165 263 STLGVLGTKR-LP-YPSRSFELAHCSRC--RI-----------DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP-- 325 (615)
Q Consensus 263 ~~~~v~d~~~-Lp-fpd~sFDlV~~s~~--~l-----------~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~-- 325 (615)
..+..+|... +. +++++||+|++.-- .. +|.......+.++.|+|+|||.+++.....+....
T Consensus 15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~ 94 (323)
T 1boo_A 15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPA 94 (323)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEE
T ss_pred ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcc
Confidence 4566677432 33 45789999998631 00 12234567899999999999999998755421110
Q ss_pred hHHHHHHHHHHHHhhcceEEEEeeCceEEEeccCC
Q 007165 326 ENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 360 (615)
Q Consensus 326 e~~~~w~~l~~La~~l~W~l~~~~~~~aiwqKP~~ 360 (615)
.....+..+.++.+..+|.+. ...+|+|+..
T Consensus 95 ~~~~~~~~i~~~~~~~Gf~~~----~~iiW~k~~~ 125 (323)
T 1boo_A 95 RSIYNFRVLIRMIDEVGFFLA----EDFYWFNPSK 125 (323)
T ss_dssp ECCHHHHHHHHHHHTTCCEEE----EEEEEECSSC
T ss_pred cccchHHHHHHHHHhCCCEEE----EEEEEecCCC
Confidence 001123444555667777655 3568988754
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=0.23 Score=48.85 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=64.3
Q ss_pred eeeeeccccchhHHhhhcCC--------CcEEEEeccCCCCCchhHHhhccc---cc-cccccccc--CCCCCC-cccee
Q 007165 461 RNVMDMNSNLGGFAAALKDK--------DVWVMNVAPVRMSARLKIIYDRGL---IG-TVHDWCES--FSTYPR-TYDLL 525 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--------~vwvmnvvp~~~~~tL~~iy~RGl---iG-~~hdwce~--fstYpr-tyDl~ 525 (615)
.+|+|..+|-|+.++.|... .|.-.-.-|.- +.+. |++ |= +.-|..+. ++..+. +||+|
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~----l~~a--~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I 156 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSR----CQIP--ASDMENITLHQGDCSDLTTFEHLREMAHPLI 156 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTT----CCCC--GGGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHH----HHHH--hccCCceEEEECcchhHHHHHhhccCCCCEE
Confidence 48999999999999988542 23333333322 1111 122 11 12233332 221122 69999
Q ss_pred cccccccccccCCCChhhhhhhhcc-cccCCcEEEEEcChh-----HHHHHHHHHhhc--Cccc
Q 007165 526 HAWKVFSEIEERGCSFEDLLIEMDR-MLRPEGFVIIRDKSS-----IINYIRKFITAL--KWDG 581 (615)
Q Consensus 526 Ha~~~fs~~~~~~c~~~~i~~EmdR-ilRp~g~~iird~~~-----~~~~~~~~~~~~--~w~~ 581 (615)
+.++.- -....++-|+-| .|+|||.+++.|... --..+.++++.. +++.
T Consensus 157 ~~d~~~-------~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 157 FIDNAH-------ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp EEESSC-------SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred EECCch-------HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 976531 157789999998 999999999976321 113566777766 4654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.062 Score=55.14 Aligned_cols=99 Identities=9% Similarity=0.079 Sum_probs=60.5
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----cc------------cccccccc--ccCC-CC-C
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL------------IGTVHDWC--ESFS-TY-P 519 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gl------------iG~~hdwc--e~fs-tY-p 519 (615)
..|+|+.+|-|+.+..+.....+ +|+=+|- +.-|.+.-+| |+ .+..+.-| |.+. .+ +
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CeEEEEecCCcHhHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 57999999999977766544433 5666664 3556554443 21 11111111 3221 12 4
Q ss_pred CccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 520 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 520 rtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
.+||+|-+...+--+... =....+|-||-|+|||||.+|+..
T Consensus 128 ~~FD~V~~~~~lhy~~~~-~~~~~~l~~~~r~LkpGG~~i~~~ 169 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHP-RHYATVMNNLSELTASGGKVLITT 169 (302)
T ss_dssp SCEEEEEEESCGGGTCST-TTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCH-HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 799999765543211111 135789999999999999999964
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=91.74 E-value=0.14 Score=51.84 Aligned_cols=140 Identities=16% Similarity=0.065 Sum_probs=76.2
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc-----cc-----------ccccc-cccccCCCCCCc
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR-----GL-----------IGTVH-DWCESFSTYPRT 521 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R-----Gl-----------iG~~h-dwce~fstYprt 521 (615)
-++|+|+.+|-|+++..|...+. .+|+=++- +.-+.+.-++ |+ +-+.+ |-.+-... +.+
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 36899999999999999987653 23333332 2222222111 22 11111 21111122 678
Q ss_pred cceeccccccccccc-CCCChhhhhhhhcccccCCcEEEEEc-----ChhHHHHHHHHHhhcCccceeeccccccCcCCC
Q 007165 522 YDLLHAWKVFSEIEE-RGCSFEDLLIEMDRMLRPEGFVIIRD-----KSSIINYIRKFITALKWDGWLSEVEPRIDALSS 595 (615)
Q Consensus 522 yDl~Ha~~~fs~~~~-~~c~~~~i~~EmdRilRp~g~~iird-----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 595 (615)
||+|-++.... ... ..---..++-++-|+|+|||.+++.- ..+.+..+.+.++..--.+.... ..-|...
T Consensus 153 fD~Ii~d~~~~-~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~---~~vP~~~ 228 (281)
T 1mjf_A 153 FDVIIADSTDP-VGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYS---FPVIGYA 228 (281)
T ss_dssp EEEEEEECCCC-C-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEE---ECCTTSS
T ss_pred eeEEEECCCCC-CCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEE---EecCCCC
Confidence 99999865421 110 00012677889999999999999972 34455555555554433332111 1112113
Q ss_pred CCceEEEEEec
Q 007165 596 SEERVLIAKKK 606 (615)
Q Consensus 596 ~~e~~l~~~k~ 606 (615)
+...+++|.|+
T Consensus 229 g~~~~~~as~~ 239 (281)
T 1mjf_A 229 SPWAFLVGVKG 239 (281)
T ss_dssp SSEEEEEEEES
T ss_pred ceEEEEEeeCC
Confidence 45678899886
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.02 Score=55.80 Aligned_cols=93 Identities=17% Similarity=0.259 Sum_probs=60.5
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHh----hccc---ccccc-cccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGL---IGTVH-DWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy----~RGl---iG~~h-dwce~fstYprtyDl~Ha~~~f 531 (615)
..|+|+.+|-|+++.+|.... -+|+=+|- +..+...- ..|+ +-+.+ |..+ +. -+.+||+|.++..|
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL-LA-SFLKADVVFLSPPW 154 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-HG-GGCCCSEEEECCCC
T ss_pred CEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH-hc-ccCCCCEEEECCCc
Confidence 479999999999999998654 34555553 23333322 2233 22222 3332 22 24699999999888
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
..... ....+.|+-|+|+|||.+|+..
T Consensus 155 ~~~~~----~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 155 GGPDY----ATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SSGGG----GGSSSBCTTTSCSSCHHHHHHH
T ss_pred CCcch----hhhHHHHHHhhcCCcceeHHHH
Confidence 74322 3336779999999999987764
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.09 Score=55.08 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=61.4
Q ss_pred CCceeeeeeccccchhHHhhhcCC-C-cEEEEeccCCCCCchhHHhh-cccccccccccccCCCCCCccceecccccccc
Q 007165 457 KNTFRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRMSARLKIIYD-RGLIGTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 457 ~~~~Rnvmdm~a~~ggfaaal~~~-~-vwvmnvvp~~~~~tL~~iy~-RGliG~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
......|+|..+|.|.++.+|.+. | +-+. -+|-+..+...-+ .++--+-+|-.++ .|. ||++.+.+++-.
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~---~~D~~~~~~~a~~~~~v~~~~~d~~~~---~~~-~D~v~~~~~lh~ 279 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGI---NFDLPQVIENAPPLSGIEHVGGDMFAS---VPQ-GDAMILKAVCHN 279 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEE---EEECHHHHTTCCCCTTEEEEECCTTTC---CCC-EEEEEEESSGGG
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEE---EeChHHHHHhhhhcCCCEEEeCCcccC---CCC-CCEEEEeccccc
Confidence 345678999999999999999643 2 3222 1121111111111 1222233454443 455 999999998875
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+... ....+|-++=|.|+|||.+||-|
T Consensus 280 ~~d~--~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 280 WSDE--KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp SCHH--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 4332 23489999999999999999874
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=91.34 E-value=0.17 Score=51.70 Aligned_cols=144 Identities=16% Similarity=0.143 Sum_probs=77.4
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc------cc----ccc-cccccccCCC-CCCccce
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR------GL----IGT-VHDWCESFST-YPRTYDL 524 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R------Gl----iG~-~hdwce~fst-YprtyDl 524 (615)
.-++|+|+.+|-|+++..|.+. ++- +|+=++- +.-+.+.-++ ++ +-+ .-|..+-... -+.+||+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVE--HCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 3478999999999999999866 332 2222221 1222221111 11 111 2232221111 2578999
Q ss_pred ecccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh-----hHHHHHHHHHhhcCccceeeccccccCc-CCCCCc
Q 007165 525 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-----SIINYIRKFITALKWDGWLSEVEPRIDA-LSSSEE 598 (615)
Q Consensus 525 ~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~-----~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~e 598 (615)
|-++..........---..++-++-|+|+|||.+++.... ..+..+.+.++...+.. +.... ..-| ...+.-
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~-v~~~~-~~vP~yp~g~w 250 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFAS-VQYAL-MHVPTYPCGSI 250 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSE-EEEEE-CCCTTSTTSCC
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCc-EEEEE-eecccccCcce
Confidence 9986543210000011157888999999999999996432 45677777777665643 11111 1111 112455
Q ss_pred eEEEEEec
Q 007165 599 RVLIAKKK 606 (615)
Q Consensus 599 ~~l~~~k~ 606 (615)
.+++|.|+
T Consensus 251 ~f~~as~~ 258 (304)
T 3bwc_A 251 GTLVCSKK 258 (304)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 78889886
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=91.29 E-value=0.1 Score=50.93 Aligned_cols=131 Identities=12% Similarity=0.054 Sum_probs=75.5
Q ss_pred eeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHH----hhcccc----cccc-cccccCCCC-CCccceeccc
Q 007165 462 NVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKII----YDRGLI----GTVH-DWCESFSTY-PRTYDLLHAW 528 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~i----y~RGli----G~~h-dwce~fstY-prtyDl~Ha~ 528 (615)
+|+|..+|.|.++.+|... +-. .|+=++- +..+.+. -..|+- -+.+ |-.+..... +.+||+|-.+
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNT--TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTS--EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CEEEEcCCchHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 8999999999998877641 111 2333332 2333322 122331 1111 222323333 4789999776
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcCh------------hHHHHHHHHHhhcCccceeeccccccCcCCCC
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS------------SIINYIRKFITALKWDGWLSEVEPRIDALSSS 596 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~------------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 596 (615)
.-.. ....++-++-|+|||||.+++.|-. .....++++...++++-+..+. -=|.
T Consensus 137 ~~~~-------~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~lp~--- 203 (221)
T 3dr5_A 137 VSPM-------DLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVA---RLPL--- 203 (221)
T ss_dssp CCTT-------THHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEE---EESS---
T ss_pred CcHH-------HHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEE---Eeec---
Confidence 5322 3566788889999999999995432 2234566677777666422111 1122
Q ss_pred CceEEEEEecc
Q 007165 597 EERVLIAKKKL 607 (615)
Q Consensus 597 ~e~~l~~~k~~ 607 (615)
.+.+++++|.+
T Consensus 204 gdGl~~~~~~~ 214 (221)
T 3dr5_A 204 GAGLTVVTKAL 214 (221)
T ss_dssp TTCEEEEEECC
T ss_pred cchHHHHHHHH
Confidence 46799999975
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=91.28 E-value=0.075 Score=52.18 Aligned_cols=95 Identities=8% Similarity=0.069 Sum_probs=57.7
Q ss_pred ceeeeeeccccchhHHhhhcCC-C-cEEEEeccCCC-CCchhHH----hhcccc---ccc-ccccccCCCC------CCc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKII----YDRGLI---GTV-HDWCESFSTY------PRT 521 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~-vwvmnvvp~~~-~~tL~~i----y~RGli---G~~-hdwce~fstY------prt 521 (615)
.-++|+|+.+|.|+.+.+|... | -. .|+-++- +..+.+. -..|+- -+. .|..+..... +.+
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDG--KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTC--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 3468999999999988877532 1 11 3333332 2333332 223442 111 2444433333 478
Q ss_pred cceecccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 522 YDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 522 yDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
||+|-.++--. ....++-++-|.|||||.+++.+
T Consensus 148 fD~I~~d~~~~-------~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 148 YDFGFVDADKP-------NYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCEEEECCchH-------HHHHHHHHHHHhcCCCeEEEEec
Confidence 99998765222 35677888889999999999975
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.12 Score=50.65 Aligned_cols=105 Identities=14% Similarity=0.195 Sum_probs=70.8
Q ss_pred eeeeeeccccchhHHhhhcCC---CcEEEEeccCCC-CCchhHHhhc----cccc----ccccccccCCCCCCccceecc
Q 007165 460 FRNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRM-SARLKIIYDR----GLIG----TVHDWCESFSTYPRTYDLLHA 527 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~---~vwvmnvvp~~~-~~tL~~iy~R----GliG----~~hdwce~fstYprtyDl~Ha 527 (615)
-..|+|..+|-|+++.+|... .. .|+-++- +..+...-++ |+-. +-.|..+.|.. .+||++-+
T Consensus 94 ~~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~v~~ 168 (255)
T 3mb5_A 94 GDFIVEAGVGSGALTLFLANIVGPEG---RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE--ENVDHVIL 168 (255)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC--CSEEEEEE
T ss_pred CCEEEEecCCchHHHHHHHHHhCCCe---EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC--CCcCEEEE
Confidence 347999999999999988644 22 2333443 2444443333 5432 34567777653 67999875
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEEc-ChhHHHHHHHHHhhcC
Q 007165 528 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALK 578 (615)
Q Consensus 528 ~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird-~~~~~~~~~~~~~~~~ 578 (615)
+- -+...++-++-|+|+|||.+++-. ..+-+.++.+.++...
T Consensus 169 ~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 169 DL---------PQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp CS---------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred CC---------CCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 31 234678999999999999999875 4566777777777665
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.18 E-value=0.12 Score=49.98 Aligned_cols=114 Identities=13% Similarity=0.141 Sum_probs=62.6
Q ss_pred eeeeeccccchhHHhhhcCC-----CcEEEEeccCCCCCchhHHhhc-cccccccccccc--CCCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCES--FSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-----~vwvmnvvp~~~~~tL~~iy~R-GliG~~hdwce~--fstYprtyDl~Ha~~~fs 532 (615)
..|+|+.+|.|+|+..|.+. .|..+-+.|..-...+...-.+ ++--+..|-.+. ++.-+.+||+|.++.. .
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~-~ 157 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA-Q 157 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC-C
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC-C
Confidence 47999999999999988653 2333322221001112222221 222222333331 2222468999998543 1
Q ss_pred ccccCCCCh-hhhhhhhcccccCCcEEEEEcChh----------HHHHHHHHHhhcCccc
Q 007165 533 EIEERGCSF-EDLLIEMDRMLRPEGFVIIRDKSS----------IINYIRKFITALKWDG 581 (615)
Q Consensus 533 ~~~~~~c~~-~~i~~EmdRilRp~g~~iird~~~----------~~~~~~~~~~~~~w~~ 581 (615)
.+. ..++.|+-|.|+|||.+++.-... ++.+-.+++....|+.
T Consensus 158 ------~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 211 (233)
T 2ipx_A 158 ------PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKP 211 (233)
T ss_dssp ------TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEE
T ss_pred ------ccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCce
Confidence 122 345677999999999999953322 1222246666667775
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=91.10 E-value=0.15 Score=53.15 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=68.1
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhhc----cc----ccccccccccCCCC----CCccceecc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL----IGTVHDWCESFSTY----PRTYDLLHA 527 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~R----Gl----iG~~hdwce~fstY----prtyDl~Ha 527 (615)
..|+|+.||-|+|+.++..... .|+=+|.. ..|...-++ |+ +-+++.=++.|... ..+||+|=+
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 3799999999999988876543 56666653 444443222 33 22333222222211 358999977
Q ss_pred ccc-cccccc-----CCCChhhhhhhhcccccCCcEEEEEc-------ChhHHHHHHHHHhhcCccc
Q 007165 528 WKV-FSEIEE-----RGCSFEDLLIEMDRMLRPEGFVIIRD-------KSSIINYIRKFITALKWDG 581 (615)
Q Consensus 528 ~~~-fs~~~~-----~~c~~~~i~~EmdRilRp~g~~iird-------~~~~~~~~~~~~~~~~w~~ 581 (615)
+-- |..-.+ ..=....++-++-|+|+|||.+++-. ...+.+-+++.+.....++
T Consensus 232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v 298 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVV 298 (332)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEE
T ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 533 221000 00125678999999999999977742 1233445555665665554
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=91.10 E-value=0.091 Score=50.09 Aligned_cols=99 Identities=8% Similarity=0.137 Sum_probs=60.9
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhh----ccc----ccccc-cccccCCCC-CCc-cceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL----IGTVH-DWCESFSTY-PRT-YDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~----RGl----iG~~h-dwce~fstY-prt-yDl~Ha~ 528 (615)
..|+|+.||.|+++.++..... -.|+=+|-. ..+...-+ .|+ +-+++ |..+..... +.+ ||+|-++
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 3699999999999886543322 245555543 44444332 233 22222 322222222 468 9999988
Q ss_pred ccccccccCCCChhhhhhhh--cccccCCcEEEEEcChhH
Q 007165 529 KVFSEIEERGCSFEDLLIEM--DRMLRPEGFVIIRDKSSI 566 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~Em--dRilRp~g~~iird~~~~ 566 (615)
..|. . -....++-++ -|+|+|||.+++......
T Consensus 133 ~~~~-~----~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 133 PPFH-F----NLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CCSS-S----CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CCCC-C----ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 7765 1 1356777777 789999999999766544
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=91.00 E-value=0.11 Score=49.76 Aligned_cols=94 Identities=15% Similarity=0.066 Sum_probs=57.4
Q ss_pred eeeeeeccccchhHHhhhcCC-C-cEEEEeccCCC-CCchhHHhh----ccc---ccccc-cccccCCCCC-----Cccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIYD----RGL---IGTVH-DWCESFSTYP-----RTYD 523 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~-~-vwvmnvvp~~~-~~tL~~iy~----RGl---iG~~h-dwce~fstYp-----rtyD 523 (615)
-++|+|+.+|.|.++.+|... + - -+|+-++- +..+.+.-+ .|+ |=+.+ |..+.+...+ .+||
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPAD--GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTT--CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 358999999999999888753 1 1 13333442 334443322 243 11111 2222222222 6899
Q ss_pred eecccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 524 LLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 524 l~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+|..+.-. -....++-++=|.|||||.+++.|
T Consensus 148 ~v~~d~~~-------~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 148 VAVVDADK-------ENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEECSCS-------TTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCCH-------HHHHHHHHHHHHHcCCCeEEEEEC
Confidence 99876531 245678889999999999999954
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.00 E-value=0.17 Score=49.21 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=66.7
Q ss_pred eeeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHHhhc-----cc--cc-cccccccc-CCCCCCccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR-----GL--IG-TVHDWCES-FSTYPRTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy~R-----Gl--iG-~~hdwce~-fstYprtyDl~Ha~ 528 (615)
.+|+|+.+|.|.++.+|... |-. +|+-++. ++.+...-++ |. +- .-.|..+. |+ +.+||++-++
T Consensus 98 ~~vLdiG~G~G~~~~~l~~~~~~~~--~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~--~~~~D~v~~~ 173 (258)
T 2pwy_A 98 MRVLEAGTGSGGLTLFLARAVGEKG--LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE--EAAYDGVALD 173 (258)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS--EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC--TTCEEEEEEE
T ss_pred CEEEEECCCcCHHHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC--CCCcCEEEEC
Confidence 48999999999999888643 211 3444443 3444444333 41 11 12344443 32 2689998763
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcChh-HHHHHHHHHhhcCcc
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS-IINYIRKFITALKWD 580 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~-~~~~~~~~~~~~~w~ 580 (615)
. -+...++-++-|+|+|||.+++-+... -+.++.+.+....|.
T Consensus 174 -----~----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 174 -----L----MEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp -----S----SCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred -----C----cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 1 135688999999999999999976543 556666666555444
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=90.77 E-value=0.04 Score=50.91 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=58.7
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHH----hhccc---cccc-ccccccCCCC---CCccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII----YDRGL---IGTV-HDWCESFSTY---PRTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~i----y~RGl---iG~~-hdwce~fstY---prtyDl~Ha~ 528 (615)
.+|+|+.+|.|+++.++...+.. +|+=++- +..+... -..|+ +-++ .|+.+..... +.+||+|-++
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEeCCccCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 47999999999998877655421 3444443 2333322 12233 2222 2444432211 4689999998
Q ss_pred ccccccccCCCChhhhhhhh--cccccCCcEEEEEcCh
Q 007165 529 KVFSEIEERGCSFEDLLIEM--DRMLRPEGFVIIRDKS 564 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~Em--dRilRp~g~~iird~~ 564 (615)
..|.. -....++-++ -|+|+|||.+++....
T Consensus 124 ~~~~~-----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 124 PPYAK-----QEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp CCGGG-----CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCCc-----hhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 77651 1345566666 9999999999997443
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=90.65 E-value=0.11 Score=53.47 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=57.5
Q ss_pred eeeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHHhhc----cc--ccccccccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR----GL--IGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy~R----Gl--iG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
..|+|+.||-||++..|... +-. .|+-+|- +.-+..+-++ |+ +=+.+.=.+.+...+.+||+|-++--.
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~~~~--~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pc 197 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMRNDG--VIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPC 197 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTCS--EEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCT
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC--EEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCC
Confidence 36999999999998888632 111 2344443 2445544433 44 222222223333356789999875332
Q ss_pred ccc---ccC-----CCC----------hhhhhhhhcccccCCcEEEEE
Q 007165 532 SEI---EER-----GCS----------FEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 532 s~~---~~~-----~c~----------~~~i~~EmdRilRp~g~~iir 561 (615)
|.+ ..+ +=+ -..+|-++=|+|+|||.+++.
T Consensus 198 sg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~s 245 (315)
T 1ixk_A 198 TGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 245 (315)
T ss_dssp TSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 210 000 000 147888999999999999994
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=90.61 E-value=0.14 Score=50.75 Aligned_cols=94 Identities=10% Similarity=0.082 Sum_probs=57.1
Q ss_pred eeeeeeccccchhHHhhhcCC-C-cEEEEeccCCC-CCchhHHh----hccc---cccc-ccccccCCCC------CCcc
Q 007165 460 FRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIY----DRGL---IGTV-HDWCESFSTY------PRTY 522 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~-~-vwvmnvvp~~~-~~tL~~iy----~RGl---iG~~-hdwce~fstY------prty 522 (615)
-++|+|+.+|.|.++..|... | - -.|+=++- +.-+.+.- ..|+ |-+. .|..+..+.. +.+|
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~--~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPED--GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTT--CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 468999999999998877532 1 1 13444442 33333322 2344 2122 1333322222 4789
Q ss_pred ceecccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 523 DLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 523 Dl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
|+|-.+.-.. ....++-++-|.|||||.+++.|
T Consensus 158 D~V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDADKD-------NYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSCST-------THHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCchH-------HHHHHHHHHHHhCCCCeEEEEec
Confidence 9998765311 35678888899999999999975
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=90.49 E-value=0.34 Score=49.64 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=29.0
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHH
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE 258 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~e 258 (615)
...+||.+||.|..+..++++ .|+|+ |.++.+++.|++
T Consensus 23 gg~~VD~T~G~GGHS~~il~~~g~Vigi-----D~Dp~Ai~~A~~ 62 (285)
T 1wg8_A 23 GGVYVDATLGGAGHARGILERGGRVIGL-----DQDPEAVARAKG 62 (285)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTCEEEEE-----ESCHHHHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHHHCCCEEEEE-----eCCHHHHHHHHh
Confidence 468999999999999999975 44555 556666666665
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=90.46 E-value=0.11 Score=52.50 Aligned_cols=108 Identities=9% Similarity=0.083 Sum_probs=58.7
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCC-----CC---Cch--hHHhhcccccccccccccCCCCCCccceecccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-----MS---ARL--KIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWK 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~-----~~---~tL--~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~ 529 (615)
..|+|..||-|||+..|... .|.-+-+-|.. .+ +.+ +|.+-.+ -.| .+.|+ +.+||+|-++.
T Consensus 76 ~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~----~~D-~~~l~--~~~fD~V~sd~ 148 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKS----RVD-IHTLP--VERTDVIMCDV 148 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEEC----SCC-TTTSC--CCCCSEEEECC
T ss_pred CEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEec----ccC-HhHCC--CCCCcEEEEeC
Confidence 47999999999998887664 45544444420 00 011 1111100 112 12243 68999999875
Q ss_pred ccccccc--CCCChhhhhhhhcccccCCc--EEEEE----cChhHHHHHHHHHh
Q 007165 530 VFSEIEE--RGCSFEDLLIEMDRMLRPEG--FVIIR----DKSSIINYIRKFIT 575 (615)
Q Consensus 530 ~fs~~~~--~~c~~~~i~~EmdRilRp~g--~~iir----d~~~~~~~~~~~~~ 575 (615)
.+..... +.=....+|-++.|+|+||| .+++. +..++++.++.+..
T Consensus 149 ~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~ 202 (265)
T 2oxt_A 149 GESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQR 202 (265)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred cccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHH
Confidence 5221000 00001126788999999999 88885 34434444444433
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=90.44 E-value=0.48 Score=47.71 Aligned_cols=145 Identities=11% Similarity=0.101 Sum_probs=77.0
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCCCchhHHhhc------cc----ccccc-cccccCCCCCCccceec
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYDR------GL----IGTVH-DWCESFSTYPRTYDLLH 526 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~~tL~~iy~R------Gl----iG~~h-dwce~fstYprtyDl~H 526 (615)
.-++|+|+.+|-|+++.++.+. ++--+-+|=.+ +.-+.+.-+. |+ +-+.+ |--+.....+.+||+|-
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid-~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDID-GKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESC-HHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECC-HHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 4578999999999999999876 43222222221 1222221111 11 11222 21111122368999999
Q ss_pred ccccccccc-cCCCChhhhhhhhcccccCCcEEEEEcC-----hhHHHHHHHHHhhcCccceeeccccccCcCCCCCceE
Q 007165 527 AWKVFSEIE-ERGCSFEDLLIEMDRMLRPEGFVIIRDK-----SSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERV 600 (615)
Q Consensus 527 a~~~fs~~~-~~~c~~~~i~~EmdRilRp~g~~iird~-----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~ 600 (615)
++.... .. ...--..+++-++-|.|+|||.+++.-. .+.+..+.+.++..=-.++.....-.. ...+...+
T Consensus 154 ~d~~~~-~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~--~~~g~w~~ 230 (275)
T 1iy9_A 154 VDSTEP-VGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPT--YPSGLWTF 230 (275)
T ss_dssp ESCSSC-CSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTT--SGGGCEEE
T ss_pred ECCCCC-CCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCc--ccCcceEE
Confidence 865332 11 0011136788899999999999999732 344555555555542233211111011 00234678
Q ss_pred EEEEecc
Q 007165 601 LIAKKKL 607 (615)
Q Consensus 601 l~~~k~~ 607 (615)
++|.|++
T Consensus 231 ~~ask~~ 237 (275)
T 1iy9_A 231 TIGSKKY 237 (275)
T ss_dssp EEEESSC
T ss_pred EEeeCCC
Confidence 8898874
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=90.43 E-value=0.17 Score=50.21 Aligned_cols=136 Identities=13% Similarity=0.125 Sum_probs=69.6
Q ss_pred eeeeeccccchhHHhhhcCC-----CcEEEEeccCCCCCchhHHhhc-ccccccccccccC--CCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCESF--STYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-----~vwvmnvvp~~~~~tL~~iy~R-GliG~~hdwce~f--stYprtyDl~Ha~~~fs 532 (615)
-.|+|+.||-|++++.|.+. .|.-+-+-|.-..+-+...-+| .+.-+..|=.++. ...+.+||+|.++.-+
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~- 156 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ- 156 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC-
T ss_pred CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCCC-
Confidence 46999999999999877532 3443332221000101112222 2222333333221 1124579998776433
Q ss_pred ccccCCCChhhhhhh-hcccccCCcEEEEEc----------ChhHHHHHHHHHhhcCccceeeccccccCcCCCCCceEE
Q 007165 533 EIEERGCSFEDLLIE-MDRMLRPEGFVIIRD----------KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVL 601 (615)
Q Consensus 533 ~~~~~~c~~~~i~~E-mdRilRp~g~~iird----------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~l 601 (615)
.+...++++ +.|.|+|||.+++-= ..++...+.+.++.-..+.. ... .-+|+ ..+.-++
T Consensus 157 ------~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~-~~~--~l~p~-~~~h~~v 226 (232)
T 3id6_C 157 ------PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETI-QII--NLDPY-DKDHAIV 226 (232)
T ss_dssp ------TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEE-EEE--ECTTT-CSSCEEE
T ss_pred ------hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEE-EEe--ccCCC-cCceEEE
Confidence 345566654 566999999999751 12233444444443334331 222 22343 3457788
Q ss_pred EEEecc
Q 007165 602 IAKKKL 607 (615)
Q Consensus 602 ~~~k~~ 607 (615)
+++|++
T Consensus 227 ~~~~~~ 232 (232)
T 3id6_C 227 LSKYKG 232 (232)
T ss_dssp EEEEC-
T ss_pred EEEeCC
Confidence 888763
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=90.43 E-value=0.081 Score=51.15 Aligned_cols=92 Identities=21% Similarity=0.272 Sum_probs=52.3
Q ss_pred eeeeeccccchhHHhhhcCC--CcEEEEeccCCCC-Cc----hhHHhhc-cccccccccccc--CCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-AR----LKIIYDR-GLIGTVHDWCES--FSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~~-~t----L~~iy~R-GliG~~hdwce~--fstYprtyDl~Ha~~~ 530 (615)
..|+|..+|-|.++..|.+. .- .|+-+|-. .- +...-.+ ++.-+..|-.++ +...+.+||+|-++-
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~~~---~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~- 134 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVDEG---IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI- 134 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTTS---EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC-
T ss_pred CEEEEECCcCCHHHHHHHHHcCCC---EEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec-
Confidence 37999999999998876532 11 23333322 11 1111111 122222343332 123457999998772
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
. .. =....++-|+-|+|||||.+++-
T Consensus 135 -~---~~-~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 135 -A---QK-NQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp -C---ST-THHHHHHHHHHHHEEEEEEEEEE
T ss_pred -c---Ch-hHHHHHHHHHHHHhCCCCEEEEE
Confidence 2 11 11334588999999999999986
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=90.39 E-value=0.13 Score=50.53 Aligned_cols=114 Identities=15% Similarity=0.238 Sum_probs=65.0
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCCC-CchhHHhhc------------cc--cccc-ccccccCCC-C-CCc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR------------GL--IGTV-HDWCESFST-Y-PRT 521 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-~tL~~iy~R------------Gl--iG~~-hdwce~fst-Y-prt 521 (615)
..|+|+.+|.|+|+.+|... |- .||+-++-. .-+...-++ |+ +-+. .|..+.++. + +.+
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPE--DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTT--SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CEEEEEcCCCCHHHHHHHHhCCC--CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 57999999999999888643 32 245555532 333333221 43 1111 222221221 1 357
Q ss_pred cceeccccccccc------ccCCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhhcC
Q 007165 522 YDLLHAWKVFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALK 578 (615)
Q Consensus 522 yDl~Ha~~~fs~~------~~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~~~ 578 (615)
+|.+... |+.- .+++--...++-++-|+|+|||.+++. |..+..+.+.+.+..-.
T Consensus 129 ~d~v~~~--~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 190 (246)
T 2vdv_E 129 LSKMFFC--FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP 190 (246)
T ss_dssp EEEEEEE--SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHST
T ss_pred cCEEEEE--CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCc
Confidence 7776522 2211 012222368999999999999999884 77776777776665433
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.11 Score=52.28 Aligned_cols=108 Identities=13% Similarity=0.112 Sum_probs=63.9
Q ss_pred eeeeeccccchhHHhhhcCC----CcEEEEeccCCCCCchhHHh----hccc--ccccccccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK----DVWVMNVAPVRMSARLKIIY----DRGL--IGTVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~----~vwvmnvvp~~~~~tL~~iy----~RGl--iG~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
..|+|+.||.|+|+..|... .|.-+-..| .-+...- ..|+ +=+++.=.+.+ ..+.+||++-.+..
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~----~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D~Vi~d~p 195 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNP----TAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVADRVIMGYV 195 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCSEEEEEECCH----HHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEEEEEECCC
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCceEEEECCc
Confidence 47999999999998887643 344433322 2222211 1122 11222222333 22668999976654
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEcChh------HHHH-HHHHHhhcCccc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS------IINY-IRKFITALKWDG 581 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~------~~~~-~~~~~~~~~w~~ 581 (615)
. ....++.++=|.|+|||.+++.+... .+.+ ++.+...+.++.
T Consensus 196 ~--------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (272)
T 3a27_A 196 H--------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKL 245 (272)
T ss_dssp S--------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEE
T ss_pred c--------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCee
Confidence 3 46788999999999999999986543 4444 444444444444
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=90.25 E-value=0.078 Score=55.05 Aligned_cols=95 Identities=15% Similarity=0.189 Sum_probs=61.8
Q ss_pred CCceeeeeeccccchhHHhhhcCC-C---cEEEEeccCCCCCchhHHhh-cccccccccccccCCCCCCccceecccccc
Q 007165 457 KNTFRNVMDMNSNLGGFAAALKDK-D---VWVMNVAPVRMSARLKIIYD-RGLIGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 457 ~~~~Rnvmdm~a~~ggfaaal~~~-~---vwvmnvvp~~~~~tL~~iy~-RGliG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
......|+|..+|.|.++.+|.+. | +-+.-. |. .+...-+ .++-=+-+|-.+ ..|. ||++.+.+++
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~d~~~---~~p~-~D~v~~~~~l 256 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQ----VVENLSGSNNLTYVGGDMFT---SIPN-ADAVLLKYIL 256 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HH----HHTTCCCBTTEEEEECCTTT---CCCC-CSEEEEESCG
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HH----HHhhcccCCCcEEEeccccC---CCCC-ccEEEeehhh
Confidence 345578999999999999999743 2 444433 21 1111101 122223345444 3454 9999999988
Q ss_pred cccccCCCChhhhhhhhcccccC---CcEEEEEc
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRP---EGFVIIRD 562 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp---~g~~iird 562 (615)
..+... ....+|-++=|.|+| ||.++|-|
T Consensus 257 h~~~d~--~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 257 HNWTDK--DCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp GGSCHH--HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred ccCCHH--HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 755432 234899999999999 99999875
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=90.22 E-value=0.047 Score=52.53 Aligned_cols=89 Identities=16% Similarity=0.133 Sum_probs=53.1
Q ss_pred eeeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHHhhc----c--------cccccccccccCCCCCCcccee
Q 007165 461 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR----G--------LIGTVHDWCESFSTYPRTYDLL 525 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy~R----G--------liG~~hdwce~fstYprtyDl~ 525 (615)
..|+|+.+|-|++++.|... +-. +|+-++- +.-+...-++ | +-=+..|..+.+. -+.+||+|
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~i 155 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCTG--KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYDAI 155 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTC--EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc-cCCCcCEE
Confidence 47999999999999888642 110 2333332 2333332211 1 1112234443322 14579999
Q ss_pred cccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 526 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 526 Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+++..+. .++-++-|+|+|||.+++--
T Consensus 156 ~~~~~~~----------~~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 156 HVGAAAP----------VVPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp EECSBBS----------SCCHHHHHTEEEEEEEEEEE
T ss_pred EECCchH----------HHHHHHHHhcCCCcEEEEEE
Confidence 9887653 34557889999999999953
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=90.19 E-value=0.24 Score=48.30 Aligned_cols=98 Identities=16% Similarity=0.073 Sum_probs=54.6
Q ss_pred eeeeeccccchhHHhhhcC-CCcEEEEeccCCCC-Cch-hHH-------hhccccc--ccccccccCCC-CCCccceecc
Q 007165 461 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARL-KII-------YDRGLIG--TVHDWCESFST-YPRTYDLLHA 527 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~-~~vwvmnvvp~~~~-~tL-~~i-------y~RGliG--~~hdwce~fst-YprtyDl~Ha 527 (615)
..|+|+.+|-|.++..|.. .+-. +|+=+|-. ..+ .+. -.+|+-. ..+.=.+.++. +.-.+|.++.
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~--~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNT--FYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTE--EEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 5699999999999999872 3432 45555543 333 221 2345422 12222233321 1134555554
Q ss_pred ccccccc-ccCCCChhhhhhhhcccccCCcEEEE
Q 007165 528 WKVFSEI-EERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 528 ~~~fs~~-~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
+.-+... ...+-+...++-||-|+|||||.++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 3222211 11112346789999999999999999
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=90.11 E-value=0.26 Score=51.65 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=61.1
Q ss_pred CCceeeeeeccccchhHHhhhcCC-C---cEEEEeccCCCCCchhHHhhc-ccccccccccccCCCCCCccceecccccc
Q 007165 457 KNTFRNVMDMNSNLGGFAAALKDK-D---VWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 457 ~~~~Rnvmdm~a~~ggfaaal~~~-~---vwvmnvvp~~~~~tL~~iy~R-GliG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
....+.|+|..+|-|.++.+|.+. | +-+.-. |. .+...-++ ++-=+-+|.-++ .|.. |++.+..++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~d~~~~---~p~~-D~v~~~~vl 271 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PH----VIQDAPAFSGVEHLGGDMFDG---VPKG-DAIFIKWIC 271 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HH----HHTTCCCCTTEEEEECCTTTC---CCCC-SEEEEESCG
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HH----HHHhhhhcCCCEEEecCCCCC---CCCC-CEEEEechh
Confidence 566789999999999999999642 3 223322 21 11111011 122223444444 4544 999998888
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
-.+... +...+|-++=|.|+|||.++|-|.
T Consensus 272 h~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 272 HDWSDE--HCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp GGBCHH--HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred hcCCHH--HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 754332 246789999999999999999763
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.97 E-value=0.08 Score=55.01 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=60.4
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCCC-CchhHHh----hcccccccccccccCCCCCCccceeccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 534 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-~tL~~iy----~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~~ 534 (615)
.+|+|+.+|.|.++.+|... |-+ +|+=+|-. .-+...- ..|+-..++ +...++.-+.+||+|-++..|...
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~-~~d~~~~~~~~fD~Iv~~~~~~~g 274 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKI--RLTLCDVSAPAVEASRATLAANGVEGEVF-ASNVFSEVKGRFDMIISNPPFHDG 274 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTC--BCEEEESBHHHHHHHHHHHHHTTCCCEEE-ECSTTTTCCSCEEEEEECCCCCSS
T ss_pred CeEEEecCccCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHhCCCCEEE-EccccccccCCeeEEEECCCcccC
Confidence 37999999999999888643 221 23333321 2232222 223322221 223333337899999999888621
Q ss_pred c-cCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 535 E-ERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 535 ~-~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
. ...-....++-|+-|+|+|||.++|-.
T Consensus 275 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 275 MQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (343)
T ss_dssp SHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 0 011136789999999999999999864
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=89.93 E-value=0.073 Score=50.62 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=54.6
Q ss_pred eeeeeccccchhHHhhhcCC--C-cEEEEeccCCC-CCchhHHhhc----cc--cc-ccccccccCCCCCCccceecccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK--D-VWVMNVAPVRM-SARLKIIYDR----GL--IG-TVHDWCESFSTYPRTYDLLHAWK 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~-vwvmnvvp~~~-~~tL~~iy~R----Gl--iG-~~hdwce~fstYprtyDl~Ha~~ 529 (615)
.+|+|..+|.|.+++.|... | . +|+=++- ++.+...-++ |+ +- ...|..+.+. -+.+||+|.+++
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~ 154 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGEDG---LVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE-PLAPYDRIYTTA 154 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG-GGCCEEEEEESS
T ss_pred CEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-CCCCeeEEEECC
Confidence 48999999999999888642 1 1 2333332 2344443332 22 11 1123333322 135899999988
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 530 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 530 ~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
.+..+. -++-|+|+|||.+++--..
T Consensus 155 ~~~~~~----------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 155 AGPKIP----------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp BBSSCC----------HHHHHTEEEEEEEEEEESS
T ss_pred chHHHH----------HHHHHHcCCCcEEEEEECC
Confidence 776332 2788999999999987543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=89.36 E-value=0.43 Score=48.59 Aligned_cols=143 Identities=10% Similarity=0.029 Sum_probs=75.2
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc------cc----cccc-ccccccCCCCCCccceecc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR------GL----IGTV-HDWCESFSTYPRTYDLLHA 527 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R------Gl----iG~~-hdwce~fstYprtyDl~Ha 527 (615)
++|+|+.+|-|+++.+|... ++. +|+=++- +.-+.+.-++ |+ +-+. -|..+.....+.+||+|-+
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSVE--KAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTCS--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHhcCCCC--EEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 78999999999999999876 432 3333332 2333332211 21 1112 2222222234688999987
Q ss_pred ccccccccc-CCCChhhhhhhhcccccCCcEEEEEc-----ChhHHHHHHHHHhhcCccceeeccccccCcCCCCCceEE
Q 007165 528 WKVFSEIEE-RGCSFEDLLIEMDRMLRPEGFVIIRD-----KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVL 601 (615)
Q Consensus 528 ~~~fs~~~~-~~c~~~~i~~EmdRilRp~g~~iird-----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~l 601 (615)
+........ ..-....++-++-|.|+|||.+++.- ..+.+..+.+.+++.--.+......-.. ...+...++
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~--~p~g~~~f~ 247 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTT--YPSGMWSYT 247 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTT--STTSEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCc--cCCCceEEE
Confidence 532110100 00012678889999999999999973 2334444444444443333211110011 112346788
Q ss_pred EEEecc
Q 007165 602 IAKKKL 607 (615)
Q Consensus 602 ~~~k~~ 607 (615)
+|.|++
T Consensus 248 ~as~~~ 253 (296)
T 1inl_A 248 FASKGI 253 (296)
T ss_dssp EEESSC
T ss_pred EecCCC
Confidence 999874
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=89.19 E-value=0.4 Score=47.80 Aligned_cols=109 Identities=13% Similarity=0.108 Sum_probs=69.4
Q ss_pred ceeeeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHHhhc-----cc--cc-ccccccccCCCCCCccceecc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR-----GL--IG-TVHDWCESFSTYPRTYDLLHA 527 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy~R-----Gl--iG-~~hdwce~fstYprtyDl~Ha 527 (615)
.-.+|+|..+|.|+++..|... |.. +|+=++- +..+...-++ |+ +- +-.|..+.|. +.+||+|-+
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~--~~~fD~Vi~ 185 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKG--TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQMYDAVIA 185 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSS--EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCCEEEEEE
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCC--EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc--CCCccEEEE
Confidence 3358999999999999888653 221 3444443 3444444333 42 11 2235555443 368999876
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEEcChh-HHHHHHHHHhhcCcc
Q 007165 528 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS-IINYIRKFITALKWD 580 (615)
Q Consensus 528 ~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~-~~~~~~~~~~~~~w~ 580 (615)
+ +. +...++-++-|+|+|||.+++-+... -.+++.+.+....|.
T Consensus 186 ~-----~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~ 230 (275)
T 1yb2_A 186 D-----IP----DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 230 (275)
T ss_dssp C-----CS----CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred c-----Cc----CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCe
Confidence 2 11 34688999999999999999977554 566666666665554
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=89.03 E-value=0.33 Score=50.82 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCceeeeeeccccchhHHhhhcCC-C---cEEEEeccCCCCCchhHHhhc-ccccccccccccCCCCCCccceecccccc
Q 007165 457 KNTFRNVMDMNSNLGGFAAALKDK-D---VWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 457 ~~~~Rnvmdm~a~~ggfaaal~~~-~---vwvmnvvp~~~~~tL~~iy~R-GliG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
....+.|+|..+|-|.++.+|.+. | +-+.-. | ..+...-++ ++-=+-+|--++ +|.. |++.+..++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~D~~~~---~p~~-D~v~~~~vl 269 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-P----HVISEAPQFPGVTHVGGDMFKE---VPSG-DTILMKWIL 269 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H----HHHTTCCCCTTEEEEECCTTTC---CCCC-SEEEEESCG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-H----HHHHhhhhcCCeEEEeCCcCCC---CCCC-CEEEehHHh
Confidence 556789999999999999999642 2 323222 2 111111111 122233454444 4544 999998888
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
-.+... +...+|-++=|.|+|||.++|-|.
T Consensus 270 h~~~d~--~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 270 HDWSDQ--HCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp GGSCHH--HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred ccCCHH--HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 754322 356789999999999999999764
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=88.97 E-value=0.095 Score=50.43 Aligned_cols=91 Identities=14% Similarity=0.251 Sum_probs=52.7
Q ss_pred eeeeeccccchhHHhhhcCC-----CcEEEEeccCCCCCchhHHh----hc-ccccccccccc--cCCCCCCccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIY----DR-GLIGTVHDWCE--SFSTYPRTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-----~vwvmnvvp~~~~~tL~~iy----~R-GliG~~hdwce--~fstYprtyDl~Ha~ 528 (615)
..|+|+.+|.|.++.+|.+. .|..+-..|. -+.... .+ ++.-+-.|-.+ .+...+.+||+|-++
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPR----VLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHH----HHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHH----HHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 47999999999999888632 3444433331 111111 01 11112223333 112235689999876
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.... -....++-++-|+|+|||.+++-
T Consensus 151 ~~~~------~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 151 VAQP------TQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CCST------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCH------hHHHHHHHHHHHhcCCCCEEEEE
Confidence 5411 12335589999999999999984
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=0.18 Score=49.08 Aligned_cols=114 Identities=11% Similarity=0.129 Sum_probs=66.2
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhH----Hhhcccc--ccc-ccccccCC--CCCCccceecccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKI----IYDRGLI--GTV-HDWCESFS--TYPRTYDLLHAWK 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~----iy~RGli--G~~-hdwce~fs--tYprtyDl~Ha~~ 529 (615)
..|+|..+|.|.++.+|... |- .+|+=++- ++-+.. +-+.|+- -++ .|-.+.++ --+.+||.|+...
T Consensus 36 ~~vLDiGcG~G~~~~~lA~~~p~--~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 36 PVTLEIGFGMGASLVAMAKDRPE--QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CeEEEEeeeChHHHHHHHHHCCC--CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 46999999999999988632 21 13444443 233333 3334542 122 23222211 1157999998752
Q ss_pred ccc--cc--ccCCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhh
Q 007165 530 VFS--EI--EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITA 576 (615)
Q Consensus 530 ~fs--~~--~~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~ 576 (615)
... .. .++|---..++-|+-|+|+|||.++|. |.....+.+..++.+
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS 165 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 211 00 112222236899999999999999997 555556667666654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=88.38 E-value=0.94 Score=46.35 Aligned_cols=128 Identities=14% Similarity=0.091 Sum_probs=70.1
Q ss_pred eeeeeccc------cchh-HHhhhcC--CCcEEEEeccCCCCCchhHHhhccccc-ccccccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNS------NLGG-FAAALKD--KDVWVMNVAPVRMSARLKIIYDRGLIG-TVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a------~~gg-faaal~~--~~vwvmnvvp~~~~~tL~~iy~RGliG-~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
..|+|..| |-|+ .+|.+.. ..|.-.-+-|. + + +..= +-.|+.+. . ++.+||+|.++..
T Consensus 65 ~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-----v----~-~v~~~i~gD~~~~-~-~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 65 MRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-----V----S-DADSTLIGDCATV-H-TANKWDLIISDMY 132 (290)
T ss_dssp CEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-----B----C-SSSEEEESCGGGC-C-CSSCEEEEEECCC
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-----C----C-CCEEEEECccccC-C-ccCcccEEEEcCC
Confidence 36999999 4476 2333333 22333333222 1 1 2222 34566542 2 3578999998643
Q ss_pred ccc-----cc-cC-CCChhhhhhhhcccccCCcEEEEEc-ChhHHHHHHHHHhhcCccceeeccccccCcCCCCCceEEE
Q 007165 531 FSE-----IE-ER-GCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLI 602 (615)
Q Consensus 531 fs~-----~~-~~-~c~~~~i~~EmdRilRp~g~~iird-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~l~ 602 (615)
.+. .. .+ --.+..++-|+-|+|||||.+++-. ...-..++.++++...+.. +... + . -..+.|.+|+
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~-v~~~-a-s--r~~s~e~~lv 207 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWT-AFVT-N-V--NASSSEAFLI 207 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEE-EEEE-G-G--GTTSSCEEEE
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcE-EEEE-E-c--CCCchheEEe
Confidence 221 00 00 0113478889999999999999954 1122346777777765542 2222 1 1 1234788998
Q ss_pred EEe
Q 007165 603 AKK 605 (615)
Q Consensus 603 ~~k 605 (615)
|+.
T Consensus 208 ~~~ 210 (290)
T 2xyq_A 208 GAN 210 (290)
T ss_dssp EEE
T ss_pred cCC
Confidence 876
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=88.23 E-value=0.58 Score=46.55 Aligned_cols=107 Identities=17% Similarity=0.114 Sum_probs=69.9
Q ss_pred eeeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHHhhc----cc---c-cccccccccCCCCCCccceecccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR----GL---I-GTVHDWCESFSTYPRTYDLLHAWK 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy~R----Gl---i-G~~hdwce~fstYprtyDl~Ha~~ 529 (615)
.+|+|+.+|.|.++.+|... |- .+|+-++. +..+.+.-++ |+ + -+..|..+.|+ +.+||+|-++-
T Consensus 114 ~~VLDiG~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~V~~~~ 189 (277)
T 1o54_A 114 DRIIDTGVGSGAMCAVLARAVGSS--GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--EKDVDALFLDV 189 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHTTTT--CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--CCSEEEEEECC
T ss_pred CEEEEECCcCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc--CCccCEEEECC
Confidence 37999999999999888643 22 14555553 3555554433 43 1 12345555543 25799987532
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEEcCh-hHHHHHHHHHhhcCcc
Q 007165 530 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWD 580 (615)
Q Consensus 530 ~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~-~~~~~~~~~~~~~~w~ 580 (615)
-+...++-++-|+|+|||.+++-+.. +-+.++.+.+....|.
T Consensus 190 ---------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~ 232 (277)
T 1o54_A 190 ---------PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 232 (277)
T ss_dssp ---------SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred ---------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 12457888999999999999998763 4566777776665554
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=87.94 E-value=0.21 Score=49.21 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=54.2
Q ss_pred eeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhccc-cc-ccccccccCCCCCCccceecccccccccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL-IG-TVHDWCESFSTYPRTYDLLHAWKVFSEIE 535 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~RGl-iG-~~hdwce~fstYprtyDl~Ha~~~fs~~~ 535 (615)
-..|+|..+|-|.++..|... +-. +|+-++- ++-+...-+++- +- +..|. +.++.-..+||+|.+.+.
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~----- 157 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEI--TTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRLPFSDTSMDAIIRIYA----- 157 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTS--EEEEEESCHHHHHHHHHHCTTSEEEECCT-TSCSBCTTCEEEEEEESC-----
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCC--eEEEEeCCHHHHHHHHHhCCCcEEEEcch-hhCCCCCCceeEEEEeCC-----
Confidence 347999999999999888754 221 3333442 244444444431 00 11122 122222368999987543
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 536 ERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 536 ~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
...+-|+-|+|||||.+++-+
T Consensus 158 ------~~~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 158 ------PCKAEELARVVKPGGWVITAT 178 (269)
T ss_dssp ------CCCHHHHHHHEEEEEEEEEEE
T ss_pred ------hhhHHHHHHhcCCCcEEEEEE
Confidence 235789999999999999864
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=87.78 E-value=0.21 Score=50.36 Aligned_cols=94 Identities=11% Similarity=0.129 Sum_probs=59.4
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC--CCchhHHhhc---------cc-------ccc-cccccccCCCC---
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM--SARLKIIYDR---------GL-------IGT-VHDWCESFSTY--- 518 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~--~~tL~~iy~R---------Gl-------iG~-~hdwce~fstY--- 518 (615)
..|+|+.+|.|.++.+|..... -.|+=+|- +..|.++-++ |+ |-+ ..||.+.....
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC 158 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred CeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence 4799999999999888765432 13444544 2344443222 22 222 36787754332
Q ss_pred --CCccceecccccccccccCCCChhhhhhhhccccc---C--CcEEEE
Q 007165 519 --PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLR---P--EGFVII 560 (615)
Q Consensus 519 --prtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilR---p--~g~~ii 560 (615)
+.+||+|-+..++-.. -....++-++.|+|+ | ||.++|
T Consensus 159 ~~~~~fD~Ii~~dvl~~~----~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 159 TGLQRFQVVLLADLLSFH----QAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp HSCSSBSEEEEESCCSCG----GGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred ccCCCCCEEEEeCcccCh----HHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 4789999876654422 237889999999999 9 996544
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=87.74 E-value=0.14 Score=49.76 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=51.9
Q ss_pred eeeeeccccchhHHhhhcCC---CcEEEEeccCCCCCchhHHhh----ccc--ccc-cccccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRMSARLKIIYD----RGL--IGT-VHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~---~vwvmnvvp~~~~~tL~~iy~----RGl--iG~-~hdwce~fstYprtyDl~Ha~~~ 530 (615)
.+|+|+.+|.|.+++.|... .|...-.- +..+...-+ .|+ +-+ .-|.-++|.. ...||+|.++..
T Consensus 93 ~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~----~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~ 167 (235)
T 1jg1_A 93 MNILEVGTGSGWNAALISEIVKTDVYTIERI----PELVEFAKRNLERAGVKNVHVILGDGSKGFPP-KAPYDVIIVTAG 167 (235)
T ss_dssp CCEEEECCTTSHHHHHHHHHHCSCEEEEESC----HHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-GCCEEEEEECSB
T ss_pred CEEEEEeCCcCHHHHHHHHHhCCEEEEEeCC----HHHHHHHHHHHHHcCCCCcEEEECCcccCCCC-CCCccEEEECCc
Confidence 47999999999999988643 34333222 233333222 232 111 1233233321 124999998876
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
+..+ .-++-|+|+|||.+++--.
T Consensus 168 ~~~~----------~~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 168 APKI----------PEPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp BSSC----------CHHHHHTEEEEEEEEEEEC
T ss_pred HHHH----------HHHHHHhcCCCcEEEEEEe
Confidence 6532 2377899999999998643
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=87.69 E-value=0.1 Score=50.30 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=52.5
Q ss_pred eeeeeccccchhHHhhhcCC----------CcEEEEeccCCCCCchhHHhhc----c--------cccccccccccCCCC
Q 007165 461 RNVMDMNSNLGGFAAALKDK----------DVWVMNVAPVRMSARLKIIYDR----G--------LIGTVHDWCESFSTY 518 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~----------~vwvmnvvp~~~~~tL~~iy~R----G--------liG~~hdwce~fstY 518 (615)
..|+|+.+|-|.+++.|... .|...-.-| .-+...-++ | +-=+..|.-+.|..
T Consensus 86 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~----~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~- 160 (227)
T 1r18_A 86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA----ELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP- 160 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCH----HHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-
T ss_pred CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCH----HHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-
Confidence 37999999999999988642 233332222 222222111 2 11122343333322
Q ss_pred CCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 519 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 519 prtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
..+||+|+++..+.. ++-++-|+|+|||.+++--
T Consensus 161 ~~~fD~I~~~~~~~~----------~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 161 NAPYNAIHVGAAAPD----------TPTELINQLASGGRLIVPV 194 (227)
T ss_dssp GCSEEEEEECSCBSS----------CCHHHHHTEEEEEEEEEEE
T ss_pred CCCccEEEECCchHH----------HHHHHHHHhcCCCEEEEEE
Confidence 258999998876652 3467889999999999864
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=86.84 E-value=0.84 Score=45.06 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=65.5
Q ss_pred eeeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHHhhc-----c-cc---c-ccccccccCCCCCCccceecc
Q 007165 461 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR-----G-LI---G-TVHDWCESFSTYPRTYDLLHA 527 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy~R-----G-li---G-~~hdwce~fstYprtyDl~Ha 527 (615)
..|+|+.+|.|.++.+|... |- .+|+-++- +..+...-++ | +. - +-.|..+. ..-+.+||+|-+
T Consensus 101 ~~vLdiG~G~G~~~~~l~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-~~~~~~~D~v~~ 177 (280)
T 1i9g_A 101 ARVLEAGAGSGALTLSLLRAVGPA--GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVDRAVL 177 (280)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCCTTCEEEEEE
T ss_pred CEEEEEcccccHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-CCCCCceeEEEE
Confidence 37999999999999988753 21 13444553 3444443333 3 11 1 22344443 111468999876
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEEcC-hhHHHHHHHHHhh-cCcc
Q 007165 528 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITA-LKWD 580 (615)
Q Consensus 528 ~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~-~~~~~~~~~~~~~-~~w~ 580 (615)
+. -+...++-++-|+|+|||.+++-.. .+-+.++...+.. ..|.
T Consensus 178 ~~---------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 178 DM---------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 223 (280)
T ss_dssp ES---------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred CC---------cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence 32 1356889999999999999999653 3445555555554 4554
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=86.76 E-value=0.076 Score=51.02 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=52.6
Q ss_pred eeeeeccccchhHHhhhcCC------CcEEEEeccCCC-CCchhHHhhc----cc-------ccc-cccccccCC---CC
Q 007165 461 RNVMDMNSNLGGFAAALKDK------DVWVMNVAPVRM-SARLKIIYDR----GL-------IGT-VHDWCESFS---TY 518 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~------~vwvmnvvp~~~-~~tL~~iy~R----Gl-------iG~-~hdwce~fs---tY 518 (615)
.+|+|+.+|.|.+++.|... |-. +|+=++- +.-+...-++ |+ +-+ ..|..+.+. .-
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNS--YVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTC--EEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCC--EEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 48999999999999888642 211 2333332 2233332222 31 111 123333210 11
Q ss_pred CCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 519 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 519 prtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+.+||+|+.+..+. .++-++-++|+|||.+++--
T Consensus 160 ~~~fD~I~~~~~~~----------~~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 160 LGLFDAIHVGASAS----------ELPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp HCCEEEEEECSBBS----------SCCHHHHHHEEEEEEEEEEE
T ss_pred CCCcCEEEECCchH----------HHHHHHHHhcCCCcEEEEEE
Confidence 36799999887665 24577889999999999863
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=86.74 E-value=1.1 Score=44.93 Aligned_cols=130 Identities=14% Similarity=0.054 Sum_probs=69.3
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CC-------chhHH---hhcccccccccccccCCCCCCccceecc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SA-------RLKII---YDRGLIGTVHDWCESFSTYPRTYDLLHA 527 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~-------tL~~i---y~RGliG~~hdwce~fstYprtyDl~Ha 527 (615)
.-++|+|+.+|-|+++.++...+ -.|+=++- +. .|+-. ++..=+-+.+.=...| +.+||+|=+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~---~~~fD~Ii~ 145 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD---IKKYDLIFC 145 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC---CCCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH---HhhCCEEEE
Confidence 34789999999999999887664 24443332 11 12111 1111122222112222 278999987
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEEcC-----hhHHHHHHHHHhhcCccceeeccccccCcCCCCCceEEE
Q 007165 528 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-----SSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLI 602 (615)
Q Consensus 528 ~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~-----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~l~ 602 (615)
+. + +....+-++-|.|+|||.+++... .+.+..+.+.++..--.+ ......-|. .+...+++
T Consensus 146 d~--~-------dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~---~~~~~~vP~-~g~~~~~~ 212 (262)
T 2cmg_A 146 LQ--E-------PDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVA---MPFVAPLRI-LSNKGYIY 212 (262)
T ss_dssp SS--C-------CCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEE---EEECCTTCT-TCCEEEEE
T ss_pred CC--C-------ChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCce---EEEEEccCC-CcccEEEE
Confidence 62 1 122367799999999999999631 223344444333331122 111122232 33455778
Q ss_pred EEecc
Q 007165 603 AKKKL 607 (615)
Q Consensus 603 ~~k~~ 607 (615)
|.|++
T Consensus 213 as~~~ 217 (262)
T 2cmg_A 213 ASFKT 217 (262)
T ss_dssp EESSC
T ss_pred eeCCC
Confidence 88863
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=86.54 E-value=1.2 Score=46.01 Aligned_cols=76 Identities=11% Similarity=0.040 Sum_probs=46.6
Q ss_pred cEEEEecCCC-CC-CCCCCceEEEecccccccccch--HHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHH
Q 007165 263 STLGVLGTKR-LP-YPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 338 (615)
Q Consensus 263 ~~~~v~d~~~-Lp-fpd~sFDlV~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La 338 (615)
..+..+|+.. ++ +++..||+++.-..+-.--|+. ..+|+.+.++++|||.|+--+ .. ..+++-+
T Consensus 168 L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt-----aa-------g~VRR~L 235 (308)
T 3vyw_A 168 LKVLLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS-----SS-------LSVRKSL 235 (308)
T ss_dssp EEEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC-----CC-------HHHHHHH
T ss_pred EEEEechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe-----Cc-------HHHHHHH
Confidence 4556677432 33 3455899998532111112222 579999999999999988422 11 2455666
Q ss_pred hhcceEEEEeeC
Q 007165 339 KSMCWKIVSKKD 350 (615)
Q Consensus 339 ~~l~W~l~~~~~ 350 (615)
...++.+....+
T Consensus 236 ~~aGF~V~k~~G 247 (308)
T 3vyw_A 236 LTLGFKVGSSRE 247 (308)
T ss_dssp HHTTCEEEEEEC
T ss_pred HHCCCEEEecCC
Confidence 777888765554
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=86.48 E-value=0.64 Score=48.02 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=76.3
Q ss_pred eeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc------cc----cc-ccccccccCCCCCCccceec
Q 007165 460 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR------GL----IG-TVHDWCESFSTYPRTYDLLH 526 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R------Gl----iG-~~hdwce~fstYprtyDl~H 526 (615)
-++|+|+.+|-|+++.+|... +.. +|+=++- +..+.+.-++ |+ +- +.-|..+.....+.+||+|-
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVE--NIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCC--EEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCC--EEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 378999999999999999876 443 3333332 2333332221 11 11 12233332222367899998
Q ss_pred cccccccccc-CCCChhhhhhhhcccccCCcEEEEEc-----ChhHHHHHHHHHhhcCccceeeccccccCcCCCCCceE
Q 007165 527 AWKVFSEIEE-RGCSFEDLLIEMDRMLRPEGFVIIRD-----KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERV 600 (615)
Q Consensus 527 a~~~fs~~~~-~~c~~~~i~~EmdRilRp~g~~iird-----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~ 600 (615)
++.. ..... ...--..++-++-|.|+|||.+++.- ..+.+.++.+.++..--.++.....-...+ .+.-.+
T Consensus 195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~--~g~w~f 271 (321)
T 2pt6_A 195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYP--CGCIGI 271 (321)
T ss_dssp EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSG--GGEEEE
T ss_pred ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEecccc--CceEEE
Confidence 7642 11110 00111678889999999999999963 234455555555544333322111101111 122347
Q ss_pred EEEEecc
Q 007165 601 LIAKKKL 607 (615)
Q Consensus 601 l~~~k~~ 607 (615)
++|.|++
T Consensus 272 ~~as~~~ 278 (321)
T 2pt6_A 272 LCCSKTD 278 (321)
T ss_dssp EEEESST
T ss_pred EEeeCCC
Confidence 7888864
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=86.19 E-value=0.45 Score=55.62 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=65.4
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----------ccc--ccccccccccCCCCCCccceec
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----------RGL--IGTVHDWCESFSTYPRTYDLLH 526 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----------RGl--iG~~hdwce~fstYprtyDl~H 526 (615)
-..|+|+.+|-|.++.+|...---.-+|+=+|- +.-|...-+ .|+ |-.++.=-+.++....+||+|.
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV 801 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGT 801 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEE
Confidence 357999999999999999865311124444543 244444332 243 3333333344555568999999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 527 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 527 a~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+..+|..+... ....++-||-|+|||| .+||..
T Consensus 802 ~~eVLeHL~dp--~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 802 CLEVIEHMEED--QACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp EESCGGGSCHH--HHHHHHHHHHHTTCCS-EEEEEE
T ss_pred EeCchhhCChH--HHHHHHHHHHHHcCCC-EEEEEe
Confidence 99999865432 2345788999999999 777754
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=85.50 E-value=0.45 Score=45.23 Aligned_cols=98 Identities=9% Similarity=0.110 Sum_probs=59.4
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhh----ccc--ccccc-cccccCCCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL--IGTVH-DWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~----RGl--iG~~h-dwce~fstYprtyDl~Ha~~~fs 532 (615)
..|+|+.+|.|.++.++..... -+|+=++-. .-+.+.-+ .|+ +=+++ |..+..+.-+.+||+|=++..|.
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 4799999999999886543321 145556543 44444322 233 22222 33332233356899998877665
Q ss_pred ccccCCCChhhhhhhhc--ccccCCcEEEEEcChh
Q 007165 533 EIEERGCSFEDLLIEMD--RMLRPEGFVIIRDKSS 565 (615)
Q Consensus 533 ~~~~~~c~~~~i~~Emd--RilRp~g~~iird~~~ 565 (615)
. -....++-++- |+|+|||.+++.....
T Consensus 134 ~-----~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 134 R-----GLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp T-----TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred C-----CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 1 13456666664 5799999999976543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=85.47 E-value=0.44 Score=48.26 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=52.7
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCC-----CC---Cch--hHHhh--cccccccccccccCCCCCCccceecc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-----MS---ARL--KIIYD--RGLIGTVHDWCESFSTYPRTYDLLHA 527 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~-----~~---~tL--~~iy~--RGliG~~hdwce~fstYprtyDl~Ha 527 (615)
..|+|..||-|||+..|... .|.-+-+-|.. .+ +.+ +|.+- .| | .+.++ +.+||++-+
T Consensus 84 ~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~------D-~~~l~--~~~fD~Vvs 154 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKV------D-VTKME--PFQADTVLC 154 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSC------C-GGGCC--CCCCSEEEE
T ss_pred CEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccC------c-HhhCC--CCCcCEEEE
Confidence 57999999999998888764 44444444420 00 011 12211 11 2 22344 689999988
Q ss_pred ccccccccc--CCCChhhhhhhhcccccCCc--EEEEE
Q 007165 528 WKVFSEIEE--RGCSFEDLLIEMDRMLRPEG--FVIIR 561 (615)
Q Consensus 528 ~~~fs~~~~--~~c~~~~i~~EmdRilRp~g--~~iir 561 (615)
+..+..... +.=....+|-|+.|+|+||| .+++.
T Consensus 155 d~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 155 DIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 755321000 00001126788999999999 88875
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=85.32 E-value=0.55 Score=48.91 Aligned_cols=100 Identities=14% Similarity=0.194 Sum_probs=59.6
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc------cc----cc-ccccccccCCCC-CCccce
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR------GL----IG-TVHDWCESFSTY-PRTYDL 524 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R------Gl----iG-~~hdwce~fstY-prtyDl 524 (615)
.-++|+|+.+|-|+++..|... ++. +|+=++- +.-+.+.-++ |+ += +.-|+.+..... +.+||+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~--~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIE--QIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCC--EEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 4479999999999999999876 343 3333332 2333332211 32 11 223443322233 378999
Q ss_pred ecccccccccc-cCCCChhhhhhhhcccccCCcEEEEE
Q 007165 525 LHAWKVFSEIE-ERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 525 ~Ha~~~fs~~~-~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
|-++..-. .. ...-....++-++-|+|+|||.+++.
T Consensus 198 Ii~d~~~p-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDP-IGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCCT-TSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCc-cCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99864311 11 01011357888999999999999997
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=85.09 E-value=0.47 Score=48.72 Aligned_cols=142 Identities=10% Similarity=0.026 Sum_probs=75.5
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhh------cc-c----cccc-ccccccCCCCCCccce
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD------RG-L----IGTV-HDWCESFSTYPRTYDL 524 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~------RG-l----iG~~-hdwce~fstYprtyDl 524 (615)
.-++|+|+.+|-|+++..|.+. ++- +|+=++- +.-+.+.-+ .| + +=+. -|-.+....-+.+||+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVE--KAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCC--EEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCC--EEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence 3478999999999999999876 332 2332322 122222111 11 1 1111 1221111123678999
Q ss_pred ecccccccccccCCCC-----hhhhhhhhcccccCCcEEEEEc------ChhHHHHHHHHHhhcCccceeeccccccCcC
Q 007165 525 LHAWKVFSEIEERGCS-----FEDLLIEMDRMLRPEGFVIIRD------KSSIINYIRKFITALKWDGWLSEVEPRIDAL 593 (615)
Q Consensus 525 ~Ha~~~fs~~~~~~c~-----~~~i~~EmdRilRp~g~~iird------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 593 (615)
|-++.... .. ..+. ....+-++-|+|+|||.+++.- ..+.+..+.+.++..--.+..... .-|.
T Consensus 155 Ii~d~~~~-~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~---~vP~ 229 (314)
T 1uir_A 155 VIIDLTDP-VG-EDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKN---HIPG 229 (314)
T ss_dssp EEEECCCC-BS-TTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEE---EEGG
T ss_pred EEECCCCc-cc-ccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEE---ecCC
Confidence 99875432 10 0011 3677889999999999999872 234555666555554333321110 0111
Q ss_pred CCCCceEEEEEecc
Q 007165 594 SSSEERVLIAKKKL 607 (615)
Q Consensus 594 ~~~~e~~l~~~k~~ 607 (615)
..+...+++|.|++
T Consensus 230 ~~g~~~~~~as~~~ 243 (314)
T 1uir_A 230 FFLNFGFLLASDAF 243 (314)
T ss_dssp GTEEEEEEEEESSS
T ss_pred CCCeEEEEEEECCC
Confidence 12235688898873
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 615 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 1e-06 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 7e-04 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 8e-04 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.003 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.004 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.004 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.004 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 47.8 bits (112), Expect = 1e-06
Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 2/146 (1%)
Query: 209 KLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL 268
K + +R VLD+ CG L + L ++ + + +
Sbjct: 35 KEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQ 94
Query: 269 GTKRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFVYSSPEAYAHDPE 326
G F+ I + + + L ++ L+PGG F+ P + +
Sbjct: 95 GDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRD 154
Query: 327 NRRIWNAMYDLLKSMCWKIVSKKDQT 352
+WN K + +
Sbjct: 155 GPVVWNEQKGEEKLVIMDWREVEPAV 180
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 39.2 bits (90), Expect = 7e-04
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 5/120 (4%)
Query: 219 VLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY 275
+LD+G G + ++ + + + +
Sbjct: 37 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 96
Query: 276 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMY 335
+ ++A C G L + L+PGG + P + P I A
Sbjct: 97 ANEKCDVAACVGATWIAGGFAGA-EELLAQSLKPGGIMLIGEP-YWRQLPATEEIAQACG 154
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 39.4 bits (90), Expect = 8e-04
Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 9/154 (5%)
Query: 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQI 253
K+ L + F + L N VLD+G G + +L + + P+
Sbjct: 24 KWKLYHRLIGSFLEEYLKNPCR---VLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVA 80
Query: 254 QFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF 313
+ + + + LP+PS +FE + +++ E+ R+L P G
Sbjct: 81 REKGVKNVVEA----KAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLL 136
Query: 314 VYSSP--EAYAHDPENRRIWNAMYDLLKSMCWKI 345
+ + + + W+ + LK+ +
Sbjct: 137 IATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSV 170
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 37.0 bits (85), Expect = 0.003
Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 4/101 (3%)
Query: 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYP 276
+L +G + +++ + A + ++ L+ + + +LG P
Sbjct: 78 ILYLGASAGTTPSHVADIADKGIVYA-IEYAPRIMRELLDACAERENIIPILGDANKPQE 136
Query: 277 SR-SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316
E + + IL+ L+ GGY + +
Sbjct: 137 YANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 36.9 bits (84), Expect = 0.004
Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 3/148 (2%)
Query: 211 NNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 270
N + LD+ CG + L ++ + ++ +
Sbjct: 33 ENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQD 92
Query: 271 KRLPYPSRSFELAHCSRCRIDWLQRDGIL---LLELDRLLRPGGYFVYSSPEAYAHDPEN 327
+R F+L C +++ L + L+ GG F++ Y
Sbjct: 93 ISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVL 152
Query: 328 RRIWNAMYDLLKSMCWKIVSKKDQTVIW 355
D W+ + D ++
Sbjct: 153 GNNDFNYDDDEVFYYWENQFEDDLVSMY 180
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 37.0 bits (85), Expect = 0.004
Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 1/102 (0%)
Query: 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 276
++L+VG G + +Y+L +L + E+ ++ A++
Sbjct: 87 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 146
Query: 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318
+ D + ++ +++PG + P
Sbjct: 147 ADFISDQMYDAVIADIPDPWNH-VQKIASMMKPGSVATFYLP 187
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 37.2 bits (85), Expect = 0.004
Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 2/126 (1%)
Query: 202 MLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI 261
+ F + + +++D GCG G L+ D E + A E
Sbjct: 14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFR 73
Query: 262 PSTLGVLGTKRLPYPSRSFELAHCSRCR--IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319
+ + + C + + +L ++ ++ GG + P
Sbjct: 74 LLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133
Query: 320 AYAHDP 325
++
Sbjct: 134 WISNMA 139
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 615 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.67 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.67 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.63 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.62 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.6 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.54 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.54 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.53 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.51 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.5 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.5 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.49 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.47 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.44 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.4 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.39 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.38 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.33 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.33 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.3 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.3 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.28 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.27 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.26 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.23 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.2 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.2 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.2 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.18 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.12 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.11 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.1 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.09 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.08 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.04 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.02 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.99 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.96 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.95 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.94 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.92 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.91 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.89 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.86 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.84 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.83 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.74 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.67 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.6 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.59 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.51 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.45 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.41 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.38 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.37 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.33 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.06 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.04 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.02 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.02 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.0 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.99 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 97.93 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.9 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.85 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 97.8 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.69 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.65 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.65 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.63 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.62 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 97.61 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.58 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.53 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.41 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.32 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.28 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.24 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.24 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.1 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.08 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.08 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.06 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.01 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.92 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 96.84 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 96.79 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 96.79 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 96.78 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 96.76 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.7 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 96.65 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 96.58 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.57 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 96.45 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.39 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 96.28 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 96.2 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 96.16 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.13 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 96.12 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.05 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.03 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 96.02 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.0 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 95.98 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 95.93 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 95.92 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 95.79 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 95.74 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 95.64 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 95.58 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 95.09 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 95.03 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 95.01 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 94.79 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 94.77 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 94.76 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 94.46 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 94.37 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 94.1 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.07 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 94.02 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 93.75 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 93.68 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 93.42 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 93.31 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 92.97 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 92.76 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 92.75 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.56 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 92.38 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 92.35 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 92.16 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 92.0 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 91.74 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 91.27 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 90.36 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 90.14 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 89.7 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 89.67 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 87.41 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 87.03 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 86.53 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 85.53 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 85.28 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 82.25 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 82.14 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 81.85 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 81.67 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 81.57 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 81.34 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.67 E-value=5.7e-17 Score=157.26 Aligned_cols=104 Identities=14% Similarity=0.248 Sum_probs=82.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+..+|||||||+|.++..+++. +|+|+|+++.++..+..........++.+.++|.+.+|+++++||+|+|.. +++|
T Consensus 15 ~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~-~l~~ 93 (231)
T d1vl5a_ 15 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRI-AAHH 93 (231)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEES-CGGG
T ss_pred CcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccccccccc-cccc
Confidence 3478999999999999999865 566666655555444322222223468899999999999999999999998 6999
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++|+..+|.++.|+|||||+|++.++.
T Consensus 94 ~~d~~~~l~~~~r~LkpgG~l~i~~~~ 120 (231)
T d1vl5a_ 94 FPNPASFVSEAYRVLKKGGQLLLVDNS 120 (231)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 999999999999999999999997643
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.67 E-value=1.9e-16 Score=154.93 Aligned_cols=115 Identities=19% Similarity=0.319 Sum_probs=89.6
Q ss_pred HHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCC
Q 007165 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTK 271 (615)
Q Consensus 195 y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~ 271 (615)
+.+.+.+.+++. ++.+|||||||+|.++..|++. +|+|+|+++.++..++ +.+...+. ++.+.++|++
T Consensus 4 ~~~~l~~~~~~~--------~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~-~~~~~~~~~~~~~~~~d~~ 74 (234)
T d1xxla_ 4 SLGLMIKTAECR--------AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVAS-SFAQEKGVENVRFQQGTAE 74 (234)
T ss_dssp HHHHHHHHHTCC--------TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHHTCCSEEEEECBTT
T ss_pred HHHHHHHHhCCC--------CCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhh-hhhcccccccccccccccc
Confidence 344555666543 4578999999999999999875 5556655555444433 23333444 5889999999
Q ss_pred CCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 272 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 272 ~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+|+++++||+|+|.. +++|++++..+++++.|+|||||++++++..
T Consensus 75 ~~~~~~~~fD~v~~~~-~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~ 121 (234)
T d1xxla_ 75 SLPFPDDSFDIITCRY-AAHHFSDVRKAVREVARVLKQDGRFLLVDHY 121 (234)
T ss_dssp BCCSCTTCEEEEEEES-CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccccccccceeeeec-eeecccCHHHHHHHHHHeeCCCcEEEEEEcC
Confidence 9999999999999998 6999999999999999999999999997643
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=2.6e-16 Score=153.07 Aligned_cols=101 Identities=21% Similarity=0.390 Sum_probs=87.2
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d 295 (615)
..+|||+|||+|.++..|++. +..+.+.|+++.|++.|++++... +..++++++|+++++||+|+|...++||++|
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCEEEEECCCCchhccccccc---ceEEEEeecccccccccccccccc-cccccccccccccccccceeeecchhhhhhh
Confidence 468999999999999999875 345666677788889999887644 5678999999999999999987667999999
Q ss_pred hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 296 DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 296 ~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+..+|+++.|+|||||+|+++.|+.
T Consensus 119 ~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 119 KDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred HHHHHHHHHhhcCcCcEEEEEECCH
Confidence 9999999999999999999998754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=6.8e-16 Score=148.17 Aligned_cols=102 Identities=20% Similarity=0.415 Sum_probs=81.8
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
..+|||||||+|.++..|++. .|+|+|+++.++..+. +.+.+.+..+.+..+|+..+|+++++||+|+|.. +++|+
T Consensus 38 ~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak-~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~-~l~~~ 115 (226)
T d1ve3a1 38 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR-EYAKSRESNVEFIVGDARKLSFEDKTFDYVIFID-SIVHF 115 (226)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEES-CGGGC
T ss_pred CCEEEEECCCcchhhhhHhhhhcccccccccccchhhhh-hhhccccccccccccccccccccCcCceEEEEec-chhhC
Confidence 367999999999999999875 4566665555544443 3333456778888999999999999999999998 68887
Q ss_pred c--chHHHHHHHHhccCCCeEEEEEcCC
Q 007165 294 Q--RDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 294 ~--d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+ +...+|+++.|+|||||+|++..++
T Consensus 116 ~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 116 EPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 6 5567999999999999999998754
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.60 E-value=6.5e-16 Score=155.55 Aligned_cols=104 Identities=18% Similarity=0.318 Sum_probs=83.2
Q ss_pred CCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
.++.+|||||||+|.++..|+++ .|+|+|+++.++..+. +.+...|+ ++.+..+|+.++|+++++||+|+|..
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~-~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~- 143 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNE-EYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD- 143 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES-
T ss_pred CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhh-cccccccccccccccccccccccccccccchhhccc-
Confidence 34578999999999999998754 4566655555444333 22233344 58899999999999999999999988
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+++|++++..+|.++.|+|||||+|+++++.
T Consensus 144 ~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~ 174 (282)
T d2o57a1 144 AFLHSPDKLKVFQECARVLKPRGVMAITDPM 174 (282)
T ss_dssp CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhhccCHHHHHHHHHHhcCCCcEEEEEEee
Confidence 6999999999999999999999999998753
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=5.5e-15 Score=145.55 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHH----cCC--CcEE
Q 007165 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE----RGI--PSTL 265 (615)
Q Consensus 192 a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~e----rg~--~~~~ 265 (615)
.....+.+.+.+.+. ++.+|||||||+|.++..+++. .+..+.+.|+++.|++.|++ .|+ .+.+
T Consensus 18 ~~~~~~~l~~~~~l~--------pg~~VLDiGCG~G~~~~~la~~--~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~ 87 (245)
T d1nkva_ 18 TEEKYATLGRVLRMK--------PGTRILDLGSGSGEMLCTWARD--HGITGTGIDMSSLFTAQAKRRAEELGVSERVHF 87 (245)
T ss_dssp CHHHHHHHHHHTCCC--------TTCEEEEETCTTCHHHHHHHHH--TCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred CHHHHHHHHHHcCCC--------CCCEEEEEcCCCCHHHHHHHHh--cCCEEEEEecccchhhHHHHHHHHhhccccchh
Confidence 344556677777653 3478999999999999998754 12233444555555555444 355 3789
Q ss_pred EEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 266 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 266 ~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.++|+..+ +++++||+|+|.. +++|++++..++.++.|+|||||++++..+.
T Consensus 88 ~~~d~~~~-~~~~~fD~v~~~~-~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 88 IHNDAAGY-VANEKCDVAACVG-ATWIAGGFAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp EESCCTTC-CCSSCEEEEEEES-CGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred hhhHHhhc-cccCceeEEEEEe-hhhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence 99999888 4679999999998 5899999999999999999999999998754
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=6.8e-15 Score=140.69 Aligned_cols=94 Identities=23% Similarity=0.339 Sum_probs=82.0
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccch
Q 007165 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 296 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~ 296 (615)
.+|||||||+|.++..+.. ++|+| +++.+++.|++++ +.+.++|++.+|+++++||+|+|.. +++|++++
T Consensus 38 ~~vLDiGcG~G~~~~~~~~--~~giD-----~s~~~~~~a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~-~l~h~~d~ 107 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLKI--KIGVE-----PSERMAEIARKRG--VFVLKGTAENLPLKDESFDFALMVT-TICFVDDP 107 (208)
T ss_dssp SCEEEETCTTSTTHHHHTC--CEEEE-----SCHHHHHHHHHTT--CEEEECBTTBCCSCTTCEEEEEEES-CGGGSSCH
T ss_pred CeEEEECCCCcccccccce--EEEEe-----CChhhcccccccc--ccccccccccccccccccccccccc-cccccccc
Confidence 4699999999999988854 46664 5566778888774 6788999999999999999999998 69999999
Q ss_pred HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 297 GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 297 ~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
..+|+++.|+|+|||++++.+|+.
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGIVDR 131 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ccchhhhhhcCCCCceEEEEecCC
Confidence 999999999999999999998765
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.53 E-value=1e-14 Score=142.89 Aligned_cols=104 Identities=19% Similarity=0.314 Sum_probs=80.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+.++|||||||+|.++..|++. +|+|+|+++.++..+. +.+.+.+.++.+.++|+++++++ ++||+|+|...+++|
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~-~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~ 118 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVAR-RKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccc-cccccccccchheehhhhhcccc-cccchHhhhhhhhhc
Confidence 4468999999999999999875 4556655554444333 22334577899999999999987 689999998767777
Q ss_pred c--cchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 293 L--QRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 293 ~--~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+ ++...+|+++.++|||||+|++..++.
T Consensus 119 ~~~~~~~~~L~~~~~~LkpgG~lii~~~~~ 148 (251)
T d1wzna1 119 FDEEDLRKLFSKVAEALKPGGVFITDFPCW 148 (251)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 6 345679999999999999999987653
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.51 E-value=2.5e-14 Score=139.28 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=101.9
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC-CCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg-~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+++|||||||+|.++..|++. +.++.+.|+++.+++.|+++. .++.+..++.+.+++ +++||+|+|.. +++|++
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~-vleh~~ 95 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTH-VLEHID 95 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEES-CGGGCS
T ss_pred CCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccc-eeEecC
Confidence 457999999999999999875 234555567777778887763 357888888888876 48999999988 799999
Q ss_pred chHHHHHHHH-hccCCCeEEEEEcCCCCCC-----------------ChhHHH-------HHHHHHHHHhhcceEEEEee
Q 007165 295 RDGILLLELD-RLLRPGGYFVYSSPEAYAH-----------------DPENRR-------IWNAMYDLLKSMCWKIVSKK 349 (615)
Q Consensus 295 d~~~~L~ei~-RvLkPGG~Lvis~P~~~~~-----------------~~e~~~-------~w~~l~~La~~l~W~l~~~~ 349 (615)
++..+|.++. |+|+|||+++++.|+.... ...... .++.++.++++.+++++...
T Consensus 96 d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 96 DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175 (225)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence 9999999998 8999999999998864210 000000 14578888888888876543
Q ss_pred CceEEEeccCCc
Q 007165 350 DQTVIWAKPISN 361 (615)
Q Consensus 350 ~~~aiwqKP~~~ 361 (615)
+ ++-||..+
T Consensus 176 ~---~~~kp~~~ 184 (225)
T d2p7ia1 176 G---IFFKALAN 184 (225)
T ss_dssp E---EEECCSCH
T ss_pred E---EEeccccH
Confidence 2 34455443
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1e-14 Score=141.61 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=93.7
Q ss_pred CCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcC-----CCcEEEEecCCCCCCCCCCceEEEe
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG-----IPSTLGVLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg-----~~~~~~v~d~~~Lpfpd~sFDlV~~ 285 (615)
....+|||||||+|.++..|+.. +|+++ |+++.+++.|+++. ..+.+.++|++.+++++++||+|++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~v-----D~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~ 133 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMV-----DITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWI 133 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEE-----ESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEe-----ecCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence 44578999999999999988754 34555 55556666665542 2458899999999999999999999
Q ss_pred cccccccccch--HHHHHHHHhccCCCeEEEEEcCCCCCC------ChhHHHHHHHHHHHHhhcceEEEEee
Q 007165 286 SRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH------DPENRRIWNAMYDLLKSMCWKIVSKK 349 (615)
Q Consensus 286 s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~~~~~------~~e~~~~w~~l~~La~~l~W~l~~~~ 349 (615)
.. +++|++++ ..++.++.++|||||.++++++..... +.........+..++++.+++++..+
T Consensus 134 ~~-~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 134 QW-VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp ES-CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred cc-ccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 98 69998776 469999999999999999986432110 00000123456677777778766543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=2.1e-14 Score=144.06 Aligned_cols=97 Identities=25% Similarity=0.352 Sum_probs=82.0
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+..+|||||||+|.++..|++.. ....+.+.|+++.+++.|+++..++.+.++|+.++|+++++||+|++.. ++++
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~-~~~~-- 159 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIY-APCK-- 159 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEES-CCCC--
T ss_pred CCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecC-CHHH--
Confidence 45789999999999999998752 2334455577788888999888899999999999999999999999887 4554
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.|+.|+|||||+|++++|+.
T Consensus 160 -----~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 160 -----AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp -----HHHHHHHEEEEEEEEEEEECT
T ss_pred -----HHHHHHHhCCCcEEEEEeeCC
Confidence 578999999999999999875
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.49 E-value=4e-14 Score=142.86 Aligned_cols=98 Identities=16% Similarity=0.277 Sum_probs=80.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHH----cCCCcEEEEecCCCCCCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~e----rg~~~~~~v~d~~~Lpfpd~sFDlV~~ 285 (615)
++.+|||||||+|.++..|++. .|+|+|++ +.+++.|++ .+.++.+.+.|+..++++ ++||+|+|
T Consensus 27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s-----~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~ 100 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSG-----ETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAIC 100 (281)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECC-----HHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEE
T ss_pred CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecc-----hhHhhhhhccccccccccccccccccccccc-CCceEEEE
Confidence 4578999999999999998753 35555554 445555443 356788999999999886 57999999
Q ss_pred cccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.. ++||++++..+|+++.++|||||++++.+|.
T Consensus 101 ~~-~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 101 HA-FLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp ES-CGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred eh-hhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 98 6999999999999999999999999998875
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.47 E-value=7.3e-14 Score=137.12 Aligned_cols=102 Identities=19% Similarity=0.358 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
++++|||||||+|.++..|++. +|+|+|+++.++..+. +.+.+.+.++.+.++|+..++++ ++||+|+|...+++|
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAE-NKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHH-HHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhcc-ccccccCccceeeccchhhhccc-ccccccceeeeeeec
Confidence 4578999999999999999875 4555555444443333 22334477899999999888864 789999987556777
Q ss_pred cc---chHHHHHHHHhccCCCeEEEEEcC
Q 007165 293 LQ---RDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 293 ~~---d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+. +...+|++++++|+|||.|++..+
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 64 445699999999999999998664
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.44 E-value=3.4e-13 Score=130.76 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHc----CCCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||||||+|..+..|++. .-.+..+.+.|+|+.|++.|+++ +....+........+++...+|+|+|+. +
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~-~ 117 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF-T 117 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES-C
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee-e
Confidence 3468999999999999888753 11234455556666666666654 3333333333333445567899999988 5
Q ss_pred ccccc--chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 290 IDWLQ--RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 290 l~~~~--d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+||++ ++..+|++++|+|||||.|+++++..
T Consensus 118 l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~ 150 (225)
T d1im8a_ 118 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 150 (225)
T ss_dssp GGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence 88874 66789999999999999999987654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.40 E-value=2.2e-13 Score=135.66 Aligned_cols=129 Identities=15% Similarity=0.216 Sum_probs=92.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcC---CCcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
...+|||+|||+|.++..|+.. .|+++ |+++.+++.|+++. ..+.+.+.+++.+++++++||+|+|..
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~v-----D~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~- 166 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDLL-----EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW- 166 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEE-----ESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEES-
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEEE-----cCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeec-
Confidence 4578999999999999987743 35555 55666667776652 236788999999999999999999998
Q ss_pred ccccccchH--HHHHHHHhccCCCeEEEEEcCCCCCC----ChhH---HHHHHHHHHHHhhcceEEEEee
Q 007165 289 RIDWLQRDG--ILLLELDRLLRPGGYFVYSSPEAYAH----DPEN---RRIWNAMYDLLKSMCWKIVSKK 349 (615)
Q Consensus 289 ~l~~~~d~~--~~L~ei~RvLkPGG~Lvis~P~~~~~----~~e~---~~~w~~l~~La~~l~W~l~~~~ 349 (615)
+++|+++++ .+|+++.++|+|||+|++..+..... +.++ ......++.++++..++++...
T Consensus 167 vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~ 236 (254)
T d1xtpa_ 167 TAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred cccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence 599997764 78999999999999999976432110 0000 0112445667777777666433
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.39 E-value=3.5e-13 Score=128.34 Aligned_cols=98 Identities=19% Similarity=0.424 Sum_probs=76.3
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
.+|||||||+|..+.+|+++ +|+++|+++.++..+. +.+.+.+++ +.+.+.|...+++ +++||+|+|.. ++||+
T Consensus 32 grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~-~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~-~~~~~ 108 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLE-RIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTV-VMMFL 108 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEES-CGGGS
T ss_pred CcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHH-HHhhhccccchhhhheecccccc-cccccEEEEee-eeecC
Confidence 57999999999999999976 5566666555554443 223344554 6888889888886 58999999988 58888
Q ss_pred cch--HHHHHHHHhccCCCeEEEEEc
Q 007165 294 QRD--GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 294 ~d~--~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++. ..+++++.++|+|||++++..
T Consensus 109 ~~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 109 EAQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp CTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 655 469999999999999999875
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.38 E-value=2.8e-13 Score=133.91 Aligned_cols=103 Identities=18% Similarity=0.278 Sum_probs=76.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcC--CCcEEEEecCCCCCC-CCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPY-PSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v~d~~~Lpf-pd~sFDlV~~s~~ 288 (615)
+..+|||||||+|..+..+++. .|+|+|+++.++..+. +.+.+.+ .++.+.++|+...++ .+++||+|+|..
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~-~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~- 101 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDAR-VRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF- 101 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHH-HHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES-
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc-
Confidence 4578999999999988888753 4667766555554333 2222223 357888999877766 467899999988
Q ss_pred ccccccc----hHHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 RIDWLQR----DGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~~~~d----~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++||..+ ...++.++.++|||||+|+++.|+
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 5888643 356999999999999999998875
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.33 E-value=1.1e-12 Score=122.21 Aligned_cols=99 Identities=10% Similarity=-0.030 Sum_probs=77.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc-----------------CCCcEEEEecCCCCCC-C
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----------------GIPSTLGVLGTKRLPY-P 276 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er-----------------g~~~~~~v~d~~~Lpf-p 276 (615)
++.+|||+|||+|..+.+|+++ |.++++.|+|+.+++.|+++ +....+..+|...++. +
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 4578999999999999999975 45566667777777777765 2335677778777763 4
Q ss_pred CCCceEEEecccccccccc--hHHHHHHHHhccCCCeEEEEEc
Q 007165 277 SRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 277 d~sFDlV~~s~~~l~~~~d--~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
..+||+|+++. +++++.+ ...+++++.++|||||++++..
T Consensus 97 ~~~~D~i~~~~-~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 97 IGHCAAFYDRA-AMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp HHSEEEEEEES-CGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred ccceeEEEEEe-eeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 57899999988 5888764 3579999999999999998865
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.33 E-value=1.4e-12 Score=132.75 Aligned_cols=98 Identities=14% Similarity=0.222 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
++.+|||||||.|.++.++++. .|+|++++......+. +.+++.++. +.+...| .++++++||.|++.. .
T Consensus 61 ~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~-~~~~~~~l~~~v~~~~~d---~~~~~~~fD~i~sie-~ 135 (291)
T d1kpia_ 61 PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFDEVDSPRRKEVRIQG---WEEFDEPVDRIVSLG-A 135 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHSCCSSCEEEEECC---GGGCCCCCSEEEEES-C
T ss_pred CCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH-HHHHhhccchhhhhhhhc---ccccccccceEeech-h
Confidence 4578999999999999999854 4555555544433332 333444554 3444444 345678999999998 4
Q ss_pred cccccc---------hHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQR---------DGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d---------~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++|+.+ ...+++++.++|||||++++.+
T Consensus 136 ~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 136 FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp GGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred HHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 888765 4689999999999999999866
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.30 E-value=2.4e-12 Score=130.15 Aligned_cols=99 Identities=12% Similarity=0.187 Sum_probs=70.1
Q ss_pred CCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEeccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
.++.+|||||||.|.++.++++. .|+|+++++.+...+. +.+++.+++ +.+...|...+ +++||.|++..
T Consensus 51 ~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~-~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~- 125 (280)
T d2fk8a1 51 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE-QVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIE- 125 (280)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEES-
T ss_pred CCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHH-HHHHhhccccchhhhhhhhhhh---ccchhhhhHhh-
Confidence 34578999999999999988754 4556655544433322 233334554 44454455444 37899999998
Q ss_pred ccccccch--HHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+++|+.+. ..+|+++.++|||||++++.+
T Consensus 126 ~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 126 AFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp CGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 48888544 789999999999999999965
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=6.6e-13 Score=132.78 Aligned_cols=105 Identities=11% Similarity=0.078 Sum_probs=75.5
Q ss_pred CCCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHc-----CC-CcE--EEEecCC------CCC
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-----GI-PST--LGVLGTK------RLP 274 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~er-----g~-~~~--~~v~d~~------~Lp 274 (615)
.+..+|||||||+|.++..+++. .-..+.+.+.|+++.+++.|+++ .+ .+. +...+.+ ..+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 34457999999999988877542 11233445556777777777654 11 122 2332222 235
Q ss_pred CCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 275 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 275 fpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+++++||+|+|.+ ++||++++..+|+++.++|+|||+++++.+.
T Consensus 119 ~~~~~fD~I~~~~-~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 119 KELQKWDFIHMIQ-MLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp SSCCCEEEEEEES-CGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCCceeEEEEcc-ceecCCCHHHHHHHHHhhCCCCCEEEEEEec
Confidence 6789999999999 5999999999999999999999999998754
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.28 E-value=3.5e-12 Score=129.35 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=71.7
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCCCCCCCceEEEecc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
.++.+|||||||.|.++.++++. .++.+++..+|+.|++.|+++ |. .+.+...|...++ ++||.|++..
T Consensus 61 ~~G~~VLDiGCG~G~~a~~~a~~--~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~ 135 (285)
T d1kpga_ 61 QPGMTLLDVGCGWGATMMRAVEK--YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIG 135 (285)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred CCCCEEEEecCcchHHHHHHHhc--CCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeeh
Confidence 35588999999999999998864 233333334445555544433 33 4677777877665 6899999998
Q ss_pred ccccccc--chHHHHHHHHhccCCCeEEEEEc
Q 007165 288 CRIDWLQ--RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 288 ~~l~~~~--d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+ ++|+. +...+++++.|+|||||.+++.+
T Consensus 136 ~-~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 136 A-FEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp C-GGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred h-hhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 4 77774 44789999999999999999865
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=1.1e-12 Score=132.44 Aligned_cols=115 Identities=21% Similarity=0.372 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----CCC-----c
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIP-----S 263 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g~~-----~ 263 (615)
..+.+.+.+++... ..++|||+|||+|.++..|+++ +.++++.|+|+.|++.|+++ +.. .
T Consensus 42 ~~~~~~l~~~l~~~--------~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~ 110 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQH--------GCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKW 110 (292)
T ss_dssp HHHHHHHHHHHHHT--------TCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTC
T ss_pred HHHHHHHHHHhhhc--------CCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhccccccccee
Confidence 44555566666522 2468999999999999999876 23344445555555555432 222 2
Q ss_pred EEEEecCC----CCCCCCCCceEEEecccccccccc-------hHHHHHHHHhccCCCeEEEEEcCC
Q 007165 264 TLGVLGTK----RLPYPSRSFELAHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 264 ~~~v~d~~----~Lpfpd~sFDlV~~s~~~l~~~~d-------~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+..++.. .+| +.++||+|+|...+++|+++ ...+|+++.|+|||||+|++...+
T Consensus 111 ~~~~~~~~~~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 111 VIEEANWLTLDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp EEEECCGGGHHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeeeccccccccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 33444432 233 34789999998767888754 356999999999999999997654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.26 E-value=3.7e-12 Score=127.11 Aligned_cols=144 Identities=14% Similarity=0.147 Sum_probs=95.6
Q ss_pred CCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCC
Q 007165 185 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP 262 (615)
Q Consensus 185 g~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~ 262 (615)
+..|..|.+...+.+.+.+... ..++.+|||+|||+|.++..++.. +|+|+|+++..+..+. +.++..+++
T Consensus 96 g~aFGTG~H~TT~l~l~~l~~~------~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~-~na~~n~~~ 168 (254)
T d2nxca1 96 GMAFGTGHHETTRLALKALARH------LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVR 168 (254)
T ss_dssp C-----CCSHHHHHHHHHHHHH------CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHHHTTCC
T ss_pred ccccCccccchhhHHHHHHHhh------cCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHH-HHHHHcCCc
Confidence 3445555544444444444311 124578999999999988877643 7889999888886665 556667888
Q ss_pred cEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcc
Q 007165 263 STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 342 (615)
Q Consensus 263 ~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~ 342 (615)
..+.++|... .+++++||+|+++. ..+ ....++.++.++|||||+|++++... .. -..+.+.+++..
T Consensus 169 ~~~~~~d~~~-~~~~~~fD~V~ani-~~~---~l~~l~~~~~~~LkpGG~lilSgil~--~~------~~~v~~~~~~~G 235 (254)
T d2nxca1 169 PRFLEGSLEA-ALPFGPFDLLVANL-YAE---LHAALAPRYREALVPGGRALLTGILK--DR------APLVREAMAGAG 235 (254)
T ss_dssp CEEEESCHHH-HGGGCCEEEEEEEC-CHH---HHHHHHHHHHHHEEEEEEEEEEEEEG--GG------HHHHHHHHHHTT
T ss_pred eeEEeccccc-cccccccchhhhcc-ccc---cHHHHHHHHHHhcCCCcEEEEEecch--hh------HHHHHHHHHHCC
Confidence 8888888654 35568999999764 232 34668899999999999999986321 11 234556666667
Q ss_pred eEEEEe
Q 007165 343 WKIVSK 348 (615)
Q Consensus 343 W~l~~~ 348 (615)
|.+...
T Consensus 236 f~~~~~ 241 (254)
T d2nxca1 236 FRPLEE 241 (254)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 776543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.6e-12 Score=125.52 Aligned_cols=113 Identities=19% Similarity=0.114 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----CCCcEEEEe
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVL 268 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~ 268 (615)
..+.+.+.+.+. ..+++|||||||+|.++.++++.. +.++.+.|+++.+++.|+++ +..+.+...
T Consensus 40 ~~~~~~la~~~~---------~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~ 108 (229)
T d1zx0a1 40 TPYMHALAAAAS---------SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG 108 (229)
T ss_dssp HHHHHHHHHHHT---------TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEES
T ss_pred HHHHHHHHHhhc---------cCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcccccccccc
Confidence 455555655554 234689999999999999998652 12333445555555666554 344555555
Q ss_pred cCC--CCCCCCCCceEEEe-----cccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 269 GTK--RLPYPSRSFELAHC-----SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 269 d~~--~Lpfpd~sFDlV~~-----s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++. ..++++++||.|+. .. .+++..+...+++++.|+|||||+|++..
T Consensus 109 ~~~~~~~~~~~~~fD~i~fD~~~~~~-~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 109 LWEDVAPTLPDGHFDGILYDTYPLSE-ETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCCCBG-GGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccccccccceeeccccccc-ccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 533 33577889999873 34 57777888999999999999999998854
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.8e-11 Score=119.10 Aligned_cols=113 Identities=15% Similarity=0.026 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc-------------
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------------- 259 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er------------- 259 (615)
..+.+.+.+++.+ .++.+|||+|||+|..+.+|++. |.++++.|+|+.+++.|+++
T Consensus 31 ~~l~~~~~~~l~~--------~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~ 99 (229)
T d2bzga1 31 QLLKKHLDTFLKG--------KSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEI 99 (229)
T ss_dssp HHHHHHHHHHHTT--------CCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTS
T ss_pred HHHHHHHHHhcCC--------CCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcc
Confidence 4445556666653 24478999999999999999976 33444445566666666543
Q ss_pred ---------CCCcEEEEecCCCCC-CCCCCceEEEeccccccccc--chHHHHHHHHhccCCCeEEEEEc
Q 007165 260 ---------GIPSTLGVLGTKRLP-YPSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 260 ---------g~~~~~~v~d~~~Lp-fpd~sFDlV~~s~~~l~~~~--d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+..+.+.++|...++ ...+.||+|+... ++++++ +...++.++.++|||||++++..
T Consensus 100 ~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~-~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 100 PGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRG-ALVAINPGDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp TTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESS-STTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccceeeecCCcEEEEEcchhhccccccCceeEEEEEE-EEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence 235677888877764 5678999999887 466664 33679999999999999988875
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.20 E-value=8.7e-11 Score=111.45 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=73.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcC---CCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||+|||+|.++..++.. +|+++|+++..+..+... +...+ .++.+..+|... ++++++||+|+|.. .
T Consensus 52 ~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n-~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~-p 128 (194)
T d1dusa_ 52 KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKEN-IKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP-P 128 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-HHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC-C
T ss_pred CCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHH-HHHhCCccceEEEEEcchhh-hhccCCceEEEEcc-c
Confidence 4578999999999999999864 566666655544433322 22223 346777888765 56789999999877 4
Q ss_pred cccccch-HHHHHHHHhccCCCeEEEEEcC
Q 007165 290 IDWLQRD-GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 l~~~~d~-~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+|+..+. ..++.++.++|+|||.+++...
T Consensus 129 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 129 IRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp STTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 6665553 6789999999999999988653
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.20 E-value=4.2e-11 Score=113.09 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=84.8
Q ss_pred CcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC--CcEE
Q 007165 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTL 265 (615)
Q Consensus 190 ~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~--~~~~ 265 (615)
.........+...+.+ .++.+|||+|||+|.++..++.. +|+++|+++..+..+. +.+++.|+ ++.+
T Consensus 16 ~t~~eir~~il~~l~~--------~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~-~n~~~~gl~~~v~~ 86 (186)
T d1l3ia_ 16 PTAMEVRCLIMCLAEP--------GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTE-MNLQRHGLGDNVTL 86 (186)
T ss_dssp CCCHHHHHHHHHHHCC--------CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHH-HHHHHTTCCTTEEE
T ss_pred CChHHHHHHHHHhcCC--------CCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHH-HHHHHcCCCcceEE
Confidence 3344454555555653 34578999999999999999865 5777777666655444 33344454 6788
Q ss_pred EEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 266 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 266 ~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.++|+...+++...||+|++... .+ +...++.++.+.|||||++++...
T Consensus 87 ~~gda~~~~~~~~~~D~v~~~~~-~~---~~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 87 MEGDAPEALCKIPDIDIAVVGGS-GG---ELQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EESCHHHHHTTSCCEEEEEESCC-TT---CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECchhhcccccCCcCEEEEeCc-cc---cchHHHHHHHHHhCcCCEEEEEee
Confidence 99998887778889999998763 33 346789999999999999998764
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.18 E-value=1.8e-11 Score=120.31 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=86.6
Q ss_pred CCCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCC-CCCCCCceEEEeccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRC 288 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~L-pfpd~sFDlV~~s~~ 288 (615)
.++.+|||||||+|.++..|++. .|+|+|+++.++..+. +.|.+ ..++.....|.... ++.+..+|++++..
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~-~~a~~-~~ni~~i~~d~~~~~~~~~~~~~v~~i~~- 149 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAE-RENIIPILGDANKPQEYANIVEKVDVIYE- 149 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTT-CTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHhh-hcccceEEEeeccCcccccccceeEEeec-
Confidence 45678999999999999999853 4667766655553332 22222 23455556664433 35667788776555
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcCCCCC-CChhHHHHHHHHHHHHhhcceEEEEe
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCWKIVSK 348 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~-~~~e~~~~w~~l~~La~~l~W~l~~~ 348 (615)
.+++..+...++.++.+.|||||+++++...... .........+...+.++..+++++..
T Consensus 150 ~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~ 210 (230)
T d1g8sa_ 150 DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDE 210 (230)
T ss_dssp CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred cccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 5777888889999999999999999997532211 11112234555666677777877654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.12 E-value=1e-10 Score=112.78 Aligned_cols=99 Identities=13% Similarity=0.208 Sum_probs=77.8
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC--CCCCCceEEEecccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSRCR 289 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp--fpd~sFDlV~~s~~~ 289 (615)
..|||||||+|.++..|+.. .++|+|++...+..+. +.+.+.++ ++.+..+|+..+. ++++++|.|++.+ .
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~-~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f-p 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV-QKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF-S 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES-C
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHH-HHHHHHhccCchhcccchhhhhcccCchhhhcccccc-c
Confidence 36999999999999998854 5778877776665554 34445555 5888999987775 7899999999777 5
Q ss_pred cccccch--------HHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRD--------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~--------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.+|.... ..+|.++.|+|||||.|.+.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 7776543 469999999999999999975
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.4e-11 Score=120.48 Aligned_cols=131 Identities=14% Similarity=0.092 Sum_probs=81.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCc----------------------------
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPS---------------------------- 263 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~---------------------------- 263 (615)
++.+|||||||+|.++..++.. .|+|+|+++.++..++... .+.....
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWL-KKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHH-HTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHH-hhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 4578999999999888776643 4677766666554443221 1111110
Q ss_pred ---EEEE----ecCCCCCCCCCCceEEEeccccccccc----chHHHHHHHHhccCCCeEEEEEcCCCCC---CChh---
Q 007165 264 ---TLGV----LGTKRLPYPSRSFELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYA---HDPE--- 326 (615)
Q Consensus 264 ---~~~v----~d~~~Lpfpd~sFDlV~~s~~~l~~~~----d~~~~L~ei~RvLkPGG~Lvis~P~~~~---~~~e--- 326 (615)
.... .+....++++++||+|++.+ ++||+. +...+++++.|+|||||+|+++++.... ....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~ 208 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLL-AMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 208 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhcccccccccccccccccCCcccEEeehh-hHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence 0111 11223467789999999988 588874 4567999999999999999998754311 0000
Q ss_pred -HHHHHHHHHHHHhhcceEEEE
Q 007165 327 -NRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 327 -~~~~w~~l~~La~~l~W~l~~ 347 (615)
..-..+.++.+++..++.++.
T Consensus 209 ~~~~~~~~~~~~l~~aGf~v~~ 230 (257)
T d2a14a1 209 CVALEKGEVEQAVLDAGFDIEQ 230 (257)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCCCHHHHHHHHHHCCCEEEE
Confidence 000124566677777887654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.10 E-value=3.8e-11 Score=116.18 Aligned_cols=102 Identities=16% Similarity=0.031 Sum_probs=74.5
Q ss_pred CCCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
.++.+|||+|||+|.++.+|++. .|+|+|+++.++..+. +.+..++ ++.+...|+...+.....+|.+.+.++.
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~-~~a~~~~-ni~~i~~d~~~~~~~~~~~~~vd~v~~~ 132 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRERN-NIIPLLFDASKPWKYSGIVEKVDLIYQD 132 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHCS-SEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH-HHhhccC-CceEEEeeccCccccccccceEEEEEec
Confidence 34578999999999999888753 5788888877765554 4444443 6778888877765555555544333334
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+++..+...++.++.++|||||+++++.
T Consensus 133 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 133 IAQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp CCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 5666777889999999999999999875
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.09 E-value=9e-11 Score=117.49 Aligned_cols=100 Identities=18% Similarity=0.127 Sum_probs=77.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
++.+|||+|||+|+++.+|+.. +|+++|+.+..+..+..++.... -.++.+.+.|....++++++||+|++
T Consensus 96 PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l- 174 (264)
T d1i9ga_ 96 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL- 174 (264)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE-
T ss_pred CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEE-
Confidence 4588999999999999999853 56777666554443332222111 23678889999888999999999984
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.++++..++.++.++|||||.|++..|+.
T Consensus 175 -----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 175 -----DMLAPWEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp -----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred -----ecCCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence 36788899999999999999999998875
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.08 E-value=9.2e-11 Score=115.85 Aligned_cols=101 Identities=21% Similarity=0.305 Sum_probs=72.4
Q ss_pred CCCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
...++|||||||+|.++..++++ .++++|+ +..+..+. +.+.+.+. .+.+..+|... +.+ .+||+|++++
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~-~~~~~~~~~~rv~~~~~D~~~-~~~-~~~D~v~~~~ 154 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTAR-SYLKDEGLSDRVDVVEGDFFE-PLP-RKADAIILSF 154 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHH-HHHHHTTCTTTEEEEECCTTS-CCS-SCEEEEEEES
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHH-HHHHHhhcccchhhccccchh-hcc-cchhheeecc
Confidence 34578999999999999999864 3455565 32333333 33333443 57888888644 223 5799999988
Q ss_pred cccccccchH--HHHHHHHhccCCCeEEEEEcCC
Q 007165 288 CRIDWLQRDG--ILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~~l~~~~d~~--~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++|+.++.. .+|++++++|||||+|++.+..
T Consensus 155 -vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~ 187 (253)
T d1tw3a2 155 -VLLNWPDHDAVRILTRCAEALEPGGRILIHERD 187 (253)
T ss_dssp -CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -ccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence 588776664 6899999999999999998743
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=1.1e-10 Score=113.04 Aligned_cols=96 Identities=9% Similarity=0.002 Sum_probs=69.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
++.+|||||||+|.++..|+.. .|+++|+++..+..+..........++.+..+|....++.+++||+|++.. +
T Consensus 75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~-~ 153 (213)
T d1dl5a1 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTV-G 153 (213)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS-B
T ss_pred ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhc-c
Confidence 4578999999999999888642 477777766655444433322222356777888877777778999999887 5
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++++++ ++.+.|||||++++..
T Consensus 154 ~~~~p~------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 154 VDEVPE------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp BSCCCH------HHHHHEEEEEEEEEEB
T ss_pred HHHhHH------HHHHhcCCCcEEEEEE
Confidence 776653 4678899999999865
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.02 E-value=1.1e-09 Score=105.40 Aligned_cols=99 Identities=15% Similarity=0.236 Sum_probs=75.9
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC--CCCCCceEEEecccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSRCR 289 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp--fpd~sFDlV~~s~~~ 289 (615)
..|||||||+|.++..++.. .++|+|++...+..+. +.+.+.++ ++.+..+|+..+. +++.++|.|++.+ .
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~-~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f-P 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL-DKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF-S 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES-C
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHH-HhhhhhccccceeeecCHHHHhhhccCCceehhcccc-c
Confidence 46999999999999998754 5677777766655444 34444455 5888999987775 7889999999776 4
Q ss_pred cccccch--------HHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRD--------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~--------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.+|.... ..+|.++.++|||||.|.+++
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 6665432 569999999999999999865
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.99 E-value=4.1e-10 Score=111.77 Aligned_cols=100 Identities=9% Similarity=0.181 Sum_probs=71.9
Q ss_pred CCCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcC-CCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg-~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
.++.+|||+|||+|.++.+|+.. .|+++|+++..+..+..++.+..+ .++.+...|.... +++++||+|++.
T Consensus 84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld- 161 (250)
T d1yb2a1 84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD- 161 (250)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC-
T ss_pred CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec-
Confidence 34578999999999999888753 466776554443333322211112 3578888887765 467899999842
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++++..++.++.++|||||+|++..|..
T Consensus 162 -----~p~p~~~l~~~~~~LKpGG~lv~~~P~i 189 (250)
T d1yb2a1 162 -----IPDPWNHVQKIASMMKPGSVATFYLPNF 189 (250)
T ss_dssp -----CSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred -----CCchHHHHHHHHHhcCCCceEEEEeCCc
Confidence 4677789999999999999999988864
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.96 E-value=1.2e-09 Score=108.16 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=69.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
..++|||||||+|.++..++++ .++++|+ +..+..+. +...+.+. .+.+...|... +.+ .+||+|++.+
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~-~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~- 155 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERAR-RRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSF- 155 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHH-HHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEES-
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHH-HHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccc-
Confidence 4578999999999999999865 3455554 22222222 22233343 35666666543 444 4699999998
Q ss_pred ccccccch--HHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++|+.++. ..+|++++++|||||+|+|.++.
T Consensus 156 vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 156 VLLNWSDEDALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence 57777665 46899999999999999998753
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=8.4e-10 Score=112.06 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcC--CCcEEEE
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGV 267 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v 267 (615)
..|.+++.+..... +.++|||||||+|.++..++++ .|+++|.++.... +. +.+++.+ ..+.+..
T Consensus 21 ~~y~~ai~~~~~~~--------~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~-~~~~~~~~~~~i~~~~ 90 (311)
T d2fyta1 21 ESYRDFIYQNPHIF--------KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AM-DIIRLNKLEDTITLIK 90 (311)
T ss_dssp HHHHHHHHHCGGGT--------TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HH-HHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHhccccC--------CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HH-HHHHHhCCCccceEEE
Confidence 45666665544322 3478999999999999888754 5888888765432 22 3333333 3578888
Q ss_pred ecCCCCCCCCCCceEEEeccccccccc---chHHHHHHHHhccCCCeEEEE
Q 007165 268 LGTKRLPYPSRSFELAHCSRCRIDWLQ---RDGILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 268 ~d~~~Lpfpd~sFDlV~~s~~~l~~~~---d~~~~L~ei~RvLkPGG~Lvi 315 (615)
++..++++++.+||+|++.. ..++.. ....++....++|||||+++-
T Consensus 91 ~~~~~l~~~~~~~D~Ivse~-~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 91 GKIEEVHLPVEKVDVIISEW-MGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp SCTTTSCCSCSCEEEEEECC-CBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeHHHhcCccccceEEEEee-eeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 99999999999999999754 344433 235677888899999999973
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=3.1e-10 Score=116.69 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=84.3
Q ss_pred ccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHH--HHH--
Q 007165 187 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQF--ALE-- 258 (615)
Q Consensus 187 ~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~--A~e-- 258 (615)
.|..........+.+.+.+. +..+|||||||+|.++..++.. .++|+|+++.....+.... ++.
T Consensus 131 ~~~e~~~~~~~~~~~~~~l~--------~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~ 202 (328)
T d1nw3a_ 131 VYGETSFDLVAQMIDEIKMT--------DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWM 202 (328)
T ss_dssp CCCCCCHHHHHHHHHHSCCC--------TTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHcCCC--------CCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 44444455555566665533 3478999999999998887632 4778877776654443221 111
Q ss_pred -----cCCCcEEEEecCCCCCCCCCCc--eEEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 259 -----RGIPSTLGVLGTKRLPYPSRSF--ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 259 -----rg~~~~~~v~d~~~Lpfpd~sF--DlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+..++.+.++|+..+++.+..| |+|++.. +.|.++....|.++.|+|||||+++...
T Consensus 203 ~~~g~~~~~i~~~~gd~~~~~~~~~~~~advi~~~~--~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 203 KWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNN--FAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHTCCCCCEEEEECCTTSHHHHHHHHHCSEEEECC--TTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred hhccccCCceEEEECcccccccccccCcceEEEEcc--eecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 1346889999999988877666 5666543 5567888899999999999999998754
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.92 E-value=9.9e-10 Score=112.49 Aligned_cols=97 Identities=20% Similarity=0.273 Sum_probs=72.5
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccc--
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC-- 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~-- 288 (615)
.++|||||||+|.++..++++ .|+++|.++. . ....+.+++.+. .+.+..++...+++++++||+|++..+
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~-~-~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI-I-EMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTH-H-HHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHH-H-HHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 478999999999999888754 5788887752 2 222344444444 577888999999999999999998542
Q ss_pred ccccccchHHHHHHHHhccCCCeEEE
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFV 314 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lv 314 (615)
.+.+......++..+.|+|||||.++
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccchhHHHHHHHHHhccCCCeEEE
Confidence 22333455778999999999999987
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=2.1e-10 Score=114.07 Aligned_cols=131 Identities=13% Similarity=0.085 Sum_probs=78.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCC-----------------------------
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP----------------------------- 262 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~----------------------------- 262 (615)
++.+|||||||+|.++..++.. +|+++|+++.++..++.... +....
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQ-EEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 132 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHT-TCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHh-cCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence 4679999999999776554432 46777666655543331111 10100
Q ss_pred --cEEEEecCC------CCCCCCCCceEEEeccccccccc----chHHHHHHHHhccCCCeEEEEEcCCCCC---CChh-
Q 007165 263 --STLGVLGTK------RLPYPSRSFELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYA---HDPE- 326 (615)
Q Consensus 263 --~~~~v~d~~------~Lpfpd~sFDlV~~s~~~l~~~~----d~~~~L~ei~RvLkPGG~Lvis~P~~~~---~~~e- 326 (615)
......|.. ..+++.++||+|+|.+ ++|++. +...+++++.++|||||+|++.++.... ....
T Consensus 133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~-~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~ 211 (263)
T d2g72a1 133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAF-CLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 211 (263)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhccccccccCCCccccCCcCcCccCeeeeHH-HHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcc
Confidence 012223332 2234567899999999 488874 4567999999999999999997753211 0000
Q ss_pred ---HHHHHHHHHHHHhhcceEEEE
Q 007165 327 ---NRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 327 ---~~~~w~~l~~La~~l~W~l~~ 347 (615)
..-..+.+..+++..+++++.
T Consensus 212 ~~~~~~t~e~v~~~l~~aGf~v~~ 235 (263)
T d2g72a1 212 LTVVPVSEEEVREALVRSGYKVRD 235 (263)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEE
T ss_pred cccCCCCHHHHHHHHHHCCCeEEE
Confidence 000124566777777776653
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=1.1e-09 Score=111.53 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=74.1
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
+++|||||||+|.++..++++ .|+++|.++.. ....+.++..+. .+.+..++...++++.++||+|++.. ..
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~--~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~-~~ 110 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS--DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW-MG 110 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH--HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC-CB
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH--hhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeee-ee
Confidence 478999999999998888753 58889887643 222344444444 47888899999999999999999765 34
Q ss_pred ccc---cchHHHHHHHHhccCCCeEEEE
Q 007165 291 DWL---QRDGILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 291 ~~~---~d~~~~L~ei~RvLkPGG~Lvi 315 (615)
+++ .....++..+.|+|||||.++-
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 443 3457799999999999999873
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=1.2e-09 Score=106.53 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHc-----CCCcEEEEecCCCCCCCCCCceEEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~er-----g~~~~~~v~d~~~Lpfpd~sFDlV~ 284 (615)
++.+|||||||+|..+..|+.. .|+++|+.+..+..+...+.+.. ...+.+..+|....+.++++||.|+
T Consensus 76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~ 155 (224)
T d1i1na_ 76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 155 (224)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhh
Confidence 4578999999999988777642 57788777665555443332211 2356778889888877888999999
Q ss_pred ecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+.. ++++++ .++.+.|||||++++...
T Consensus 156 ~~~-~~~~ip------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 156 VGA-AAPVVP------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp ECS-BBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred hhc-chhhcC------HHHHhhcCCCcEEEEEEc
Confidence 887 576654 357789999999998653
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.84 E-value=3.4e-09 Score=105.93 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=70.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
++.+|||+|||+|.++..|+.. .|+++|+++..+..+.. .+...+. .+.+...|.. ..++...||.|+.
T Consensus 103 pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~-~~~~~g~~~~v~~~~~d~~-~~~~~~~~D~V~~-- 178 (266)
T d1o54a_ 103 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAES-NLTKWGLIERVTIKVRDIS-EGFDEKDVDALFL-- 178 (266)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH-HHHHTTCGGGEEEECCCGG-GCCSCCSEEEEEE--
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH-HHHHhccccCcEEEecccc-ccccccceeeeEe--
Confidence 4578999999999999998743 56777776665554442 2233344 3445555532 3456688998862
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.++++..++.++.++|||||+|++..|..
T Consensus 179 ----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~ 207 (266)
T d1o54a_ 179 ----DVPDPWNYIDKCWEALKGGGRFATVCPTT 207 (266)
T ss_dssp ----CCSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred ----cCCCHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence 45788889999999999999999988764
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.83 E-value=5.3e-09 Score=102.14 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=81.8
Q ss_pred CCCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCC---CCCCCCCCceEEEe
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---RLPYPSRSFELAHC 285 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~---~Lpfpd~sFDlV~~ 285 (615)
.++.+|||+|||+|.++.+|++. .|+++|+++.++..+. +.+..+ ........|.. ..+.....+|+|++
T Consensus 72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~-~~a~~~-~~~~~i~~d~~~~~~~~~~~~~vD~i~~ 149 (227)
T d1g8aa_ 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEER-RNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHHhc-CCceEEEEECCCcccccccccceEEEEE
Confidence 35688999999999999999853 6788888777665443 333333 23455556643 33344567898875
Q ss_pred cccccccccchHHHHHHHHhccCCCeEEEEEcCCCCC-CChhHHHHHHHHHHHHhhcceEEEE
Q 007165 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~-~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
. +++..+...++.++.+.|||||+++++...... ............+.+.+. .+++..
T Consensus 150 d---~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie 208 (227)
T d1g8aa_ 150 D---VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIE 208 (227)
T ss_dssp C---CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEE
T ss_pred E---ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEE
Confidence 3 455667788999999999999999987522111 111122334455555543 455553
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=6e-09 Score=106.94 Aligned_cols=100 Identities=13% Similarity=0.104 Sum_probs=69.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHc-----------CCCcEEEEecCCCCC--CC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-----------GIPSTLGVLGTKRLP--YP 276 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~er-----------g~~~~~~v~d~~~Lp--fp 276 (615)
++.+|||+|||+|.++..|+.. .|+++|+.+..+..+..++.+.. ..++.+...|..... ++
T Consensus 98 pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~ 177 (324)
T d2b25a1 98 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 177 (324)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccC
Confidence 4578999999999999999853 57777666655544433222110 124677888876654 46
Q ss_pred CCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 277 d~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+..||.|+. -++++..++.++.++|||||+|++..|..
T Consensus 178 ~~~fD~V~L------D~p~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 178 SLTFDAVAL------DMLNPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp ---EEEEEE------CSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred CCCcceEee------cCcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 678999984 24667779999999999999999988875
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.67 E-value=1.8e-08 Score=98.10 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=65.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
++.+|||||||+|.+++.|+.. .|+++|+.+. +++.|+++ ..++.+..+|......+.++||.|++.. +
T Consensus 70 ~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~-----~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~-a 143 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEK-----MYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWA-T 143 (224)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHH-----HHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESS-B
T ss_pred ccceEEEecCCCCHHHHHHHHHhcccccccccHH-----HHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhc-c
Confidence 4578999999999999888753 5666665544 44444333 4567888888655444567899999877 4
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+++++ ..+.+.|||||++++-.
T Consensus 144 ~~~ip------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 144 APTLL------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp BSSCC------HHHHHTEEEEEEEEEEE
T ss_pred hhhhh------HHHHHhcCCCCEEEEEE
Confidence 66654 34567899999999854
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=2.4e-08 Score=105.20 Aligned_cols=122 Identities=6% Similarity=0.005 Sum_probs=78.4
Q ss_pred CccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHH---
Q 007165 186 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE--- 258 (615)
Q Consensus 186 ~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~e--- 258 (615)
+.|.+....++..+.+.+.+. ++.++||||||+|.++..++.. .++|+|+++.++..+..+....
T Consensus 195 ~vYGEl~~~~i~~Il~~l~Lk--------pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~ 266 (406)
T d1u2za_ 195 YVYGELLPNFLSDVYQQCQLK--------KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKR 266 (406)
T ss_dssp GCCCCBCHHHHHHHHHHTTCC--------TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHhCCC--------CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 345556666777777776643 4478999999999998888742 5778877776665554322211
Q ss_pred ---cCC---CcEEE-EecCCCCCCC---CCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 259 ---RGI---PSTLG-VLGTKRLPYP---SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 259 ---rg~---~~~~~-v~d~~~Lpfp---d~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.+. ...+. ..+....++. -..+|+|++.. +.|.++....|.++.|+|||||+|+.+.
T Consensus 267 ~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn--~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 267 CKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN--FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC--TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred hhhhccccccceeeeeechhhccccccccccceEEEEec--ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 111 12222 2222222211 13467888654 5677888899999999999999998765
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.59 E-value=5.9e-08 Score=91.95 Aligned_cols=102 Identities=11% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCCeEEEECCCCch----HHHHHhcC---CCccccCChhchhHHHHHHHHHc--------CCC-----------------
Q 007165 215 NIRNVLDVGCGVAS----FGAYLLSH---DIIAMSLAPNDVHENQIQFALER--------GIP----------------- 262 (615)
Q Consensus 215 ~~~~VLDIGCGtG~----~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er--------g~~----------------- 262 (615)
+.-+|+++|||+|. ++..+.+. .-.-+.+.+.|++...++.|++. +.+
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 44689999999994 44444432 11124456667777777777532 000
Q ss_pred -----------cEEEEecCCC-CCCCCCCceEEEecccccccccch--HHHHHHHHhccCCCeEEEEEc
Q 007165 263 -----------STLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 263 -----------~~~~v~d~~~-Lpfpd~sFDlV~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+.+...+... .+.+.+.||+|+|.+ ++.|+++. .++++.+.+.|+|||+|++-.
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRN-VLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRN-VMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECS-SGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeeh-hHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 1222232222 223457899999999 57777665 579999999999999999854
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.51 E-value=1.2e-07 Score=91.61 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=67.1
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhchhHHHHHHHHHcC-CCcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~---~~V~gvdis~~Dls~a~i~~A~erg-~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
+..+|||||||+|+.++.|+. ..|++++..+.....+. +...+.+ .++.+..+|......+.+.||.|++.. ++
T Consensus 78 ~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~-~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~-a~ 155 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAK-RNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTA-GA 155 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS-BB
T ss_pred ccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHH-HHHHHcCCceeEEEECccccCCcccCcceeEEeec-cc
Confidence 346799999999998887763 35777777654444333 2233334 468889998766555678999999876 56
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+.+++. +...|+|||++++..
T Consensus 156 ~~ip~~------l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 156 PKIPEP------LIEQLKIGGKLIIPV 176 (215)
T ss_dssp SSCCHH------HHHTEEEEEEEEEEE
T ss_pred ccCCHH------HHHhcCCCCEEEEEE
Confidence 655432 456799999999854
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.45 E-value=8e-08 Score=93.31 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=65.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC----------CCccccCChhchhHHHHHHHH-----HcCCCcEEEEecCCCCCCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----------DIIAMSLAPNDVHENQIQFAL-----ERGIPSTLGVLGTKRLPYPSRS 279 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----------~V~gvdis~~Dls~a~i~~A~-----erg~~~~~~v~d~~~Lpfpd~s 279 (615)
+..+|||||||+|.+++.|+.. +|+++|..+.....+...... ....++.+..+|......+.+.
T Consensus 80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~ 159 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAP 159 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCS
T ss_pred CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccc
Confidence 4578999999999998887642 356665544433333211111 0123678888897776666789
Q ss_pred ceEEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 280 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 280 FDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
||.|++.. +++.+++ .+.+.|||||++++..
T Consensus 160 fD~Iiv~~-a~~~~p~------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 160 YNAIHVGA-AAPDTPT------ELINQLASGGRLIVPV 190 (223)
T ss_dssp EEEEEECS-CBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred eeeEEEEe-echhchH------HHHHhcCCCcEEEEEE
Confidence 99999877 5665543 4678999999999855
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.41 E-value=3.5e-07 Score=90.62 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=84.8
Q ss_pred hcCCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhH
Q 007165 174 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHE 250 (615)
Q Consensus 174 ~~g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~ 250 (615)
+.|-.+.+.-....|..+.......+.+++. ++.+|||+|||+|.++..++.. +|+++|+++..+..
T Consensus 76 E~g~~~~~d~~~~~f~~~~~~er~ri~~~~~----------~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~ 145 (260)
T d2frna1 76 ENGIKYKLDVAKIMFSPANVKERVRMAKVAK----------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF 145 (260)
T ss_dssp ETTEEEEEETTTSCCCGGGHHHHHHHHHHCC----------TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHH
T ss_pred ecCeeEEeccccccEecCCHHHHHHHHhhcC----------CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHH
Confidence 3455555555556666665544444555543 3578999999999999887743 67788777765543
Q ss_pred HHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEE
Q 007165 251 NQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 251 a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
+. +.++..++ .+.+..+|+..++ +.+.||.|++.. . +....++.++.++|+|||++.+.
T Consensus 146 ~~-~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~~--p---~~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 146 LV-ENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGY--V---VRTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp HH-HHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECC--C---SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred HH-HHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEECC--C---CchHHHHHHHHhhcCCCCEEEEE
Confidence 33 33444455 3677888887776 357899998653 2 23345788899999999998764
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=5.3e-07 Score=90.05 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=78.6
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
..+|||+|||+|..+..++. ..|+++|+++..+..+. +.|...++ ++.+...|... ++++++||+|+|+--.+
T Consensus 109 ~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~-~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 109 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ-RNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH-HHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCB
T ss_pred ccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHH-HHHHHhCcccceeeeccccc-ccCCCceeEEEecchhh
Confidence 46799999999998888864 36777777766655554 33444566 48888888543 35567999999862111
Q ss_pred ------------cccc------------chHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceE
Q 007165 291 ------------DWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (615)
Q Consensus 291 ------------~~~~------------d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~ 344 (615)
.|-+ ...+++.++.+.|+|||.+++..... + -..+..++++.+|.
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~----q-----~~~v~~~l~~~gf~ 255 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ----Q-----GEAVRQAFILAGYH 255 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS----C-----HHHHHHHHHHTTCT
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECch----H-----HHHHHHHHHHCCCC
Confidence 1111 12358899999999999999965332 1 24556666666663
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.37 E-value=1.1e-07 Score=96.85 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=72.0
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCC----CCCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR----LPYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~--~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~----Lpfpd~sFDlV~~s~~ 288 (615)
+++|||++||+|.++.+++. +.|+++|+++..+..+. +.+...|+ ++.+..+|..+ ++...++||+|++.--
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~-~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP 224 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAE-ENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 224 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHH-HHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHH-HHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence 57899999999999988863 36778877776665554 33344565 57888888543 3445578999997421
Q ss_pred ccc--------cccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 RID--------WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~--------~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+. ...+...++..+.++|+|||.|++++-.
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 111 1122345888999999999999998743
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.33 E-value=3.6e-07 Score=93.25 Aligned_cols=105 Identities=17% Similarity=0.122 Sum_probs=70.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCC----CCCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR----LPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~----Lpfpd~sFDlV~~ 285 (615)
++.+|||+|||+|.++..++.. .|+++|+++..+..+. +.+...|+ ++.+.++|+.. ++....+||+|++
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~-~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAK-ENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 223 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHH-HHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence 3478999999999999988754 5777776665554443 33334465 46777887543 3335678999997
Q ss_pred cccccc-c-------ccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 SRCRID-W-------LQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 s~~~l~-~-------~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.--.+. . ..+...++..+.++|+|||.|++++...
T Consensus 224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 431111 0 1123457888999999999999987443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.06 E-value=4.4e-06 Score=84.84 Aligned_cols=103 Identities=13% Similarity=0.070 Sum_probs=71.4
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCC----CCCCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKR----LPYPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~----Lpfpd~sFDlV~~ 285 (615)
+++|||++||+|.++.+++.. .|+++|+++..+..+..+.. ..++ ++.+..+|+.. +.-..++||+|++
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~-~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~ 223 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFE-ANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 223 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHH-HTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHH-HhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence 578999999999999877532 58888888876665554333 3343 46788888632 2223468999997
Q ss_pred ccc--------ccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 286 SRC--------RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 286 s~~--------~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
--- ...-..+...++..+.++|+|||.|++++-.
T Consensus 224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 321 1111233456889999999999999998743
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.04 E-value=4.9e-06 Score=79.01 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=50.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
.+++|||+|||+|.++..++.. .|+++ |+++.+++.|++....+.+.++|...++ ++||+|+++-
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~v-----Did~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NP 115 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAF-----DIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNP 115 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEE-----ESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCccccc-----ccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeCc
Confidence 3578999999999888766543 46666 5556667788877777899999988765 7899999763
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.02 E-value=3.1e-06 Score=81.21 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=64.6
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCC-C-----CCCCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-----YPSRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~L-p-----fpd~sFDl 282 (615)
+++|||||||+|..+..|+.+ +++++|+.+.....+. +.....|. .+.+..++.... + +..++||+
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~-~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQ-QMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHH-HHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHH-HHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 478999999999999998753 5667766655444333 22233354 478888885432 2 45578999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
|+.-. -+........+.+..++|||||++++..
T Consensus 136 ifiD~--~~~~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 136 VFLDH--WKDRYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EEECS--CGGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred eeecc--cccccccHHHHHHHhCccCCCcEEEEeC
Confidence 99653 1111112335788889999999876633
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.02 E-value=1.3e-06 Score=79.30 Aligned_cols=101 Identities=16% Similarity=0.104 Sum_probs=64.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCC-CCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~-Lpfpd~sFDlV~~s~~ 288 (615)
.+.+|||+|||+|.++...+.+ +|+++|.++..+.... +.+...+. ++.+..+|+.. ++...++||+|++.-
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~-~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP- 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQ-DNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP- 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHH-HHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC-
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhh-hhhhhcccccchhhhcccccccccccccccceeEech-
Confidence 3578999999999999876644 5677766665443333 23333344 36777777544 345568899999642
Q ss_pred cccccc-chHHHHHHH--HhccCCCeEEEEEcCC
Q 007165 289 RIDWLQ-RDGILLLEL--DRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~~~~-d~~~~L~ei--~RvLkPGG~Lvis~P~ 319 (615)
+|.. .....+..+ .++|+|||.+++..+.
T Consensus 92 --Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 92 --PYAKETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp --SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred --hhccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 1211 223455544 3679999999997643
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.00 E-value=1.8e-06 Score=79.92 Aligned_cols=101 Identities=19% Similarity=0.251 Sum_probs=61.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC----CCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~----Lpfpd~sFDlV~~s~~ 288 (615)
++.+|||+|||+|.++...+.+ .++++|.++..+..+. +.++..++...+...+... ......+||+|++.-
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~-~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP- 118 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLK-ENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP- 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHH-HHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC-
T ss_pred CCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhh-HHHHhhccccceeeeehhcccccccccCCccceeEEcc-
Confidence 3468999999999999887654 4555555544433332 2233446666666555432 224557899999743
Q ss_pred ccccccchHHHHHHH--HhccCCCeEEEEEcCC
Q 007165 289 RIDWLQRDGILLLEL--DRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei--~RvLkPGG~Lvis~P~ 319 (615)
+|-.+....+.++ ..+|+|||++++..+.
T Consensus 119 --PY~~~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 119 --PYAMDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp --CTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred --ccccCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 1212333344443 3589999999987643
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.99 E-value=2.8e-06 Score=83.19 Aligned_cols=97 Identities=14% Similarity=0.017 Sum_probs=65.1
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
...++|||||||+|.++..++++. ..+..+-.|+.+ .++.+. ....+.+..+|..+ +.| ..|++++++ ++|..
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi~~~~-~~~ri~~~~gd~~~-~~p--~~D~~~l~~-vLh~~ 152 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLPQ-VIENAP-PLSGIEHVGGDMFA-SVP--QGDAMILKA-VCHNW 152 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECHH-HHTTCC-CCTTEEEEECCTTT-CCC--CEEEEEEES-SGGGS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecchh-hhhccC-CCCCeEEecCCccc-ccc--cceEEEEeh-hhhhC
Confidence 345789999999999999998651 111222224422 222111 12357778788543 334 359999998 46666
Q ss_pred cch--HHHHHHHHhccCCCeEEEEEc
Q 007165 294 QRD--GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 294 ~d~--~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++. ..+|+++++.|+|||.+++.+
T Consensus 153 ~de~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 153 SDEKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 655 368999999999999999976
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=7.9e-06 Score=78.69 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=74.4
Q ss_pred cHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--Cc
Q 007165 191 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PS 263 (615)
Q Consensus 191 ~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~ 263 (615)
...++...+.++.. +++|||||||+|..+.+++.+ +++++|..+.....++ +...+.|. .+
T Consensus 46 ~~g~lL~~L~~~~~-----------~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~-~~~~~ag~~~~i 113 (219)
T d2avda1 46 EQAQLLANLARLIQ-----------AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGR-PLWRQAEAEHKI 113 (219)
T ss_dssp HHHHHHHHHHHHTT-----------CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHH-HHHHHTTCTTTE
T ss_pred HHHHHHHHHHHccC-----------CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHH-HHHHhcCccceE
Confidence 34555555555543 578999999999999999854 5667776665444333 22233343 46
Q ss_pred EEEEecCCC-CC-----CCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 264 TLGVLGTKR-LP-----YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 264 ~~~v~d~~~-Lp-----fpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.+..+++.. ++ ...++||+|+.-. .-......+..+.++|+|||.+++..-
T Consensus 114 ~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~----dk~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 114 DLRLKPALETLDELLAAGEAGTFDVAVVDA----DKENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp EEEESCHHHHHHHHHHTTCTTCEEEEEECS----CSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEeehhhcchhhhhhcccCCccEEEEeC----CHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 777777432 21 2357899999543 223445688899999999999999653
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.90 E-value=8e-06 Score=82.60 Aligned_cols=102 Identities=9% Similarity=0.088 Sum_probs=65.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCCC----CCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRL----PYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~L----pfpd~sFDlV~~ 285 (615)
++.+|||++||+|.++.+++.. .|+++|.+...+..+..+... .++ ++.+.+.|+... ....+.||+|++
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~l-n~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil 210 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL-AGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 210 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH-HTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhh-hcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence 4578999999999999988754 566666655555444432222 233 467888886432 123478999997
Q ss_pred cccc-------ccc--ccchHHHHHHHHhccCCCeEEEEEc
Q 007165 286 SRCR-------IDW--LQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 286 s~~~-------l~~--~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
---. ..+ ..+...++..+.++|+|||.+++.+
T Consensus 211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 3111 111 1223456778889999999766654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.85 E-value=6.6e-06 Score=78.04 Aligned_cols=69 Identities=12% Similarity=0.042 Sum_probs=47.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
.+.+|||+|||+|.++..++.. .|+++|+++..+..+. +.+...+....+...|...++ +.||+|++.-
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~-~N~~~~~~~~~~~~~d~~~~~---~~fD~Vi~nP 117 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLI-ENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNP 117 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHTGGGTTSEEEEESCGGGCC---CCCSEEEECC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHH-HHHHHcCCCceEEECchhhhC---CcCcEEEEcC
Confidence 4578999999999998776643 4666666554443332 223344677888888876653 6799999764
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.80 E-value=1.4e-05 Score=75.49 Aligned_cols=102 Identities=19% Similarity=0.159 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----CCCcEEEEecCCCCC-----CCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLP-----YPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~d~~~Lp-----fpd~sFDlV~~ 285 (615)
+...+||++||+|..+..++++. ....+.+.|.++.+++.|+++ +.++.+..++...+. +..++||.|+.
T Consensus 23 ~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~ 101 (192)
T d1m6ya2 23 DEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILM 101 (192)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeee
Confidence 44789999999999999988652 223455556677777777765 445777777765432 44678999975
Q ss_pred cccc--c------ccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 286 SRCR--I------DWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 286 s~~~--l------~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-..+ . .-+......|..+.++|+|||.+++.+
T Consensus 102 DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 102 DLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp ECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred ccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 4311 0 112334568999999999999999876
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.69 E-value=5.7e-05 Score=75.98 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=67.1
Q ss_pred CCCeEEEECCCCchHHHHHhc----C-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLS----H-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~----~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~ 285 (615)
...+|||.|||+|.++..+.. . .+.|+|+.+..+..+... +...+....+...|.... .+...||+|++
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~-~~~~~fD~vi~ 194 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVG-ADLQRQKMTLLHQDGLAN-LLVDPVDVVIS 194 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHH-HHHHTCCCEEEESCTTSC-CCCCCEEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHH-HHHhhhhhhhhccccccc-ccccccccccc
Confidence 446899999999999877753 2 345555554433322221 123356667777665433 34578999998
Q ss_pred ccccccccc-----------------c-hHHHHHHHHhccCCCeEEEEEcCCCCCC
Q 007165 286 SRCRIDWLQ-----------------R-DGILLLELDRLLRPGGYFVYSSPEAYAH 323 (615)
Q Consensus 286 s~~~l~~~~-----------------d-~~~~L~ei~RvLkPGG~Lvis~P~~~~~ 323 (615)
.-- +.... + ...++..+.+.|+|||++++..|..+..
T Consensus 195 NPP-y~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~ 249 (328)
T d2f8la1 195 DLP-VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFG 249 (328)
T ss_dssp ECC-CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGG
T ss_pred CCC-CCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCcccc
Confidence 642 21111 1 1236889999999999999998876543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.65 E-value=2.3e-05 Score=76.43 Aligned_cols=96 Identities=9% Similarity=-0.003 Sum_probs=65.1
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
...+|||||||+|.++..++++. ..+.+...|+.+ .++.+. ...++.+..+|... +.+ .+|++++.+ ++|..+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi~~~~-~~~rv~~~~gD~f~-~~p--~aD~~~l~~-vLHdw~ 152 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDRPQ-VVENLS-GSNNLTYVGGDMFT-SIP--NADAVLLKY-ILHNWT 152 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECHH-HHTTCC-CBTTEEEEECCTTT-CCC--CCSEEEEES-CGGGSC
T ss_pred CceEEEEecCCccHHHHHHHHhC-CCCeEEEecCHH-HHHhCc-ccCceEEEecCccc-CCC--CCcEEEEEe-ecccCC
Confidence 34789999999999999998651 112222334432 222222 13467888888654 323 579999998 477666
Q ss_pred ch--HHHHHHHHhccCCC---eEEEEEc
Q 007165 295 RD--GILLLELDRLLRPG---GYFVYSS 317 (615)
Q Consensus 295 d~--~~~L~ei~RvLkPG---G~Lvis~ 317 (615)
+. .++|+++++.|+|| |++++.+
T Consensus 153 d~~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 153 DKDCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred hHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 65 46899999999999 7787765
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.65 E-value=2.2e-05 Score=77.98 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=70.4
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------------CCCcEEEEecCCCCCCCCC
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------------GIPSTLGVLGTKRLPYPSR 278 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------------g~~~~~~v~d~~~Lpfpd~ 278 (615)
.++++||.||+|.|..+..++..... .+...++++..++.|++. ..++.+...|+...--.++
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~--~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVD--EVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCS--EEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCceEEEecCCchHHHHHHHHhCCc--eEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 34689999999999999998866432 233346667777777642 2356788888543222357
Q ss_pred CceEEEecccccccccc----hHHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 279 SFELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 279 sFDlV~~s~~~l~~~~d----~~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
+||+|++-. .-...+. -..+++.+.+.|+|||.+++...+.+
T Consensus 149 ~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~ 194 (276)
T d1mjfa_ 149 GFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVY 194 (276)
T ss_dssp CEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred CCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcc
Confidence 899999632 1211111 14689999999999999998764443
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.63 E-value=2.5e-05 Score=75.87 Aligned_cols=94 Identities=14% Similarity=0.023 Sum_probs=63.3
Q ss_pred CCCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
...++|||||||+|.++..++++ +++..|+... ++.+. ....+.+...|... +.|. .|+++..+ +
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v------i~~~~-~~~r~~~~~~d~~~-~~P~--ad~~~l~~-v 148 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV------IEDAP-SYPGVEHVGGDMFV-SIPK--ADAVFMKW-I 148 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT------TTTCC-CCTTEEEEECCTTT-CCCC--CSCEECSS-S
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh------hhhcc-cCCceEEecccccc-cCCC--cceEEEEE-E
Confidence 34578999999999999999865 4445555332 12211 23457777777533 3443 46666666 4
Q ss_pred cccccch--HHHHHHHHhccCCCeEEEEEcC
Q 007165 290 IDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+|..++. ..+|+++++.|+|||.+++.+.
T Consensus 149 lh~~~d~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 149 CHDWSDEHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp STTSCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred eecCCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 5555443 5699999999999999999764
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=8.9e-05 Score=68.82 Aligned_cols=131 Identities=12% Similarity=0.040 Sum_probs=74.3
Q ss_pred cCCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHH
Q 007165 175 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHEN 251 (615)
Q Consensus 175 ~g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a 251 (615)
.|..+.+|.+. ...+..+...+.+..++... -...+|||++||+|.++...+.+ .|+.+|.+...+...
T Consensus 11 kg~~l~~~~~~-~~RPt~~~vre~lfn~l~~~-------~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~ 82 (183)
T d2fpoa1 11 RGRKLPVPDSP-GLRPTTDRVRETLFNWLAPV-------IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQL 82 (183)
T ss_dssp TTCEEECCCC-------CHHHHHHHHHHHHHH-------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHH
T ss_pred CCCEecCCCCC-CcCcCcHHHHHHHHhhhhcc-------cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHH
Confidence 44556666543 22333344444444444311 12367999999999999877754 566776665544333
Q ss_pred HHHHHHHcCC-CcEEEEecCCC-CCCCCCCceEEEeccccccccc-chHHHHHHHH--hccCCCeEEEEEc
Q 007165 252 QIQFALERGI-PSTLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQ-RDGILLLELD--RLLRPGGYFVYSS 317 (615)
Q Consensus 252 ~i~~A~erg~-~~~~~v~d~~~-Lpfpd~sFDlV~~s~~~l~~~~-d~~~~L~ei~--RvLkPGG~Lvis~ 317 (615)
..+ +...+. +..+...|+.. +.....+||+|++-- +|-. ....++..+. .+|+++|.+++..
T Consensus 83 k~N-~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DP---PY~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 83 IKN-LATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDP---PFRRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp HHH-HHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECC---SSSTTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred HHH-HhhccccceeeeeecccccccccccccCEEEEcC---ccccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 322 222333 45666666433 334567899999753 2222 2345555554 4699999999864
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=97.61 E-value=1.8e-05 Score=73.90 Aligned_cols=89 Identities=20% Similarity=0.260 Sum_probs=73.8
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCC-CCCchhHHhhcccccccccccccCCCCCCccceecccccccccccCCCC
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVR-MSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCS 540 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~-~~~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~~~c~ 540 (615)
.|+|+.+|.|.|+..|.. |+-+| +++.|.+.=+|++ =..+...|.++..+.+||+|++.+++..+. +
T Consensus 39 ~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~----d 106 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD----D 106 (208)
T ss_dssp CEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS----C
T ss_pred eEEEECCCCcccccccce-------EEEEeCChhhccccccccc-cccccccccccccccccccccccccccccc----c
Confidence 599999999999999964 23444 3578888888874 467777888888789999999999999664 3
Q ss_pred hhhhhhhhcccccCCcEEEEEc
Q 007165 541 FEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 541 ~~~i~~EmdRilRp~g~~iird 562 (615)
...+|-|+-|+|+|||.++|.+
T Consensus 107 ~~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 107 PERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchhhhhhcCCCCceEEEEe
Confidence 7889999999999999999974
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.58 E-value=5.8e-05 Score=70.70 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=64.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||.|||+|.|+..+.++ .+.++|+.+... .. .....+...|..... ....||+|++..-.
T Consensus 19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~-----~~----~~~~~~~~~~~~~~~-~~~~fd~ii~npP~ 88 (223)
T d2ih2a1 19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL-----DL----PPWAEGILADFLLWE-PGEAFDLILGNPPY 88 (223)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC-----CC----CTTEEEEESCGGGCC-CSSCEEEEEECCCC
T ss_pred CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH-----hh----cccceeeeeehhccc-cccccceecccCcc
Confidence 4478999999999998877643 355565544322 11 123455666654443 34789999976321
Q ss_pred ccc--cc-------------------------c-hHHHHHHHHhccCCCeEEEEEcCCCCCCChh
Q 007165 290 IDW--LQ-------------------------R-DGILLLELDRLLRPGGYFVYSSPEAYAHDPE 326 (615)
Q Consensus 290 l~~--~~-------------------------d-~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e 326 (615)
... .. + ...++..+.+.|+|||++++..|..+.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~ 153 (223)
T d2ih2a1 89 GIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLED 153 (223)
T ss_dssp CCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGG
T ss_pred ccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcc
Confidence 110 00 0 1246788899999999999999887654443
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.53 E-value=5.2e-05 Score=73.19 Aligned_cols=109 Identities=13% Similarity=0.136 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCC--CcEE
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTL 265 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~--~~~~ 265 (615)
.++...+.++.. +++|||||+++|..+.+++. ..+++++..+.....+. +...+.|. .+.+
T Consensus 48 g~~L~~L~~~~~-----------~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~-~~~~~~g~~~~i~~ 115 (227)
T d1susa1 48 GQFLSMLLKLIN-----------AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL-PVIKKAGVDHKIDF 115 (227)
T ss_dssp HHHHHHHHHHHT-----------CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH-HHHHHTTCGGGEEE
T ss_pred HHHHHHHHHhcC-----------CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHH-HHHHHhccccceee
Confidence 456666666654 47899999999999988874 26677777665443333 33333454 3677
Q ss_pred EEecCCC-CC------CCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 266 GVLGTKR-LP------YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 266 ~v~d~~~-Lp------fpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
..+++.. ++ ...++||+|+.-. +-......+..+.++|+|||.+++..
T Consensus 116 ~~g~a~~~L~~l~~~~~~~~~fD~iFiDa----~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 116 REGPALPVLDEMIKDEKNHGSYDFIFVDA----DKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EESCHHHHHHHHHHCGGGTTCBSEEEECS----CSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred eehHHHHHHHHHHhccccCCceeEEEecc----chhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 7777532 22 1246899999532 23445678888999999999999865
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.41 E-value=0.00018 Score=66.79 Aligned_cols=131 Identities=14% Similarity=0.059 Sum_probs=78.0
Q ss_pred CCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHH
Q 007165 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQ 252 (615)
Q Consensus 176 g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~ 252 (615)
|..+.+|.+. ...+..+...+.+-.++... ....+|||++||+|.++...+.+ .|+.+|.+...+....
T Consensus 10 g~~l~~~~~~-~~RPt~~~vrealFn~l~~~-------~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~ 81 (182)
T d2fhpa1 10 GRRLKALDGD-NTRPTTDKVKESIFNMIGPY-------FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIK 81 (182)
T ss_dssp TCBCCCCCCC-SSCCCCHHHHHHHHHHHCSC-------CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCEecCCCCC-CcCcCcHHHHHHHHHHHHHh-------cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHH
Confidence 3445554432 23444455566666666522 23578999999999999987765 4666655544333222
Q ss_pred HHHHHHcCC--CcEEEEecCCCC----CCCCCCceEEEeccccccc-ccchHHHHHHHH--hccCCCeEEEEEcC
Q 007165 253 IQFALERGI--PSTLGVLGTKRL----PYPSRSFELAHCSRCRIDW-LQRDGILLLELD--RLLRPGGYFVYSSP 318 (615)
Q Consensus 253 i~~A~erg~--~~~~~v~d~~~L----pfpd~sFDlV~~s~~~l~~-~~d~~~~L~ei~--RvLkPGG~Lvis~P 318 (615)
+.+...+. ++.+...|+.+. .-...+||+|++-- +| ..+....+..+. .+|+|||.+++..+
T Consensus 82 -~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDP---PY~~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 82 -ENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP---PYAKQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp -HHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC---CGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -HHhhhhhcccccccccccchhhhhhhcccCCCcceEEech---hhhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 22222233 467777775432 12346899999643 22 223455677765 47999999998653
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.32 E-value=0.00056 Score=68.06 Aligned_cols=105 Identities=15% Similarity=0.152 Sum_probs=70.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCC-C-CCCCCCceE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-L-PYPSRSFEL 282 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~-L-pfpd~sFDl 282 (615)
.+++||=||-|.|..++.++.. .+. .+...++++..++.+++. ..++.+...|+.. + ...+++||+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~--~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIE--QIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccce--eeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence 4689999999999999999865 211 223335555666666553 3567788888432 2 134568999
Q ss_pred EEeccccccccc----chHHHHHHHHhccCCCeEEEEEcCCCCC
Q 007165 283 AHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYA 322 (615)
Q Consensus 283 V~~s~~~l~~~~----d~~~~L~ei~RvLkPGG~Lvis~P~~~~ 322 (615)
|+.-. .-...+ -...+++.+.+.|+|||.+++..++.+.
T Consensus 158 Ii~D~-~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~ 200 (290)
T d1xj5a_ 158 VIVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWL 200 (290)
T ss_dssp EEECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTT
T ss_pred EEEcC-CCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHH
Confidence 99632 111111 1256999999999999999998876643
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.28 E-value=0.00016 Score=71.46 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=60.0
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCC-CCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKR-LPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~---~~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~-Lpfpd~sFDlV~~s~~~ 289 (615)
..++||+|||+|..+..++. ..|+++|+++.-+.-+. +.|+..+.. +.+...+... ++...++||+|+|+---
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~-~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPY 189 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIAR-KNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY 189 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHH-HHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHH-HHHHHcCCCceeEEeecccccccccccCcccEEEEcccc
Confidence 36799999999987777653 35777777665554444 333444553 3445555433 23234789999986210
Q ss_pred c----------cccc--------chHHHHHH-HHhccCCCeEEEEEcC
Q 007165 290 I----------DWLQ--------RDGILLLE-LDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 l----------~~~~--------d~~~~L~e-i~RvLkPGG~Lvis~P 318 (615)
+ .|-| |.-.++++ +.+.|+|||++++-..
T Consensus 190 I~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 190 VKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp BCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred cCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 0111 01112222 5688999999999764
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.24 E-value=0.00032 Score=70.06 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=68.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCC-CCCCCCCc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSF 280 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~-Lpfpd~sF 280 (615)
.+++||-||.|.|..++.+++. .|+.+ ++++..++.|++. ..++.+...|+.. +.-.+++|
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~V-----EIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~y 163 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILC-----EVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEF 163 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEE-----ESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEe-----cCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCC
Confidence 4689999999999999999865 23444 4445555555442 3467888888432 22234789
Q ss_pred eEEEecccccccc-c----chHHHHHHHHhccCCCeEEEEEcCCCCC
Q 007165 281 ELAHCSRCRIDWL-Q----RDGILLLELDRLLRPGGYFVYSSPEAYA 322 (615)
Q Consensus 281 DlV~~s~~~l~~~-~----d~~~~L~ei~RvLkPGG~Lvis~P~~~~ 322 (615)
|+|++-. .-... + ....+++.+.+.|+|||.++......+.
T Consensus 164 DvIi~D~-~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~ 209 (295)
T d1inla_ 164 DVIIIDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFY 209 (295)
T ss_dssp EEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTT
T ss_pred CEEEEcC-CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhh
Confidence 9999643 12111 1 1256999999999999999998876543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.24 E-value=0.00016 Score=72.85 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=67.7
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----------CCCcEEEEecCCCC-CCCCCCceEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----------GIPSTLGVLGTKRL-PYPSRSFELA 283 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----------g~~~~~~v~d~~~L-pfpd~sFDlV 283 (615)
.+++||.||.|.|..+..++... ....+...++++..++.|++. ..++.+..+|+... .-.+++||+|
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 45899999999999999887541 112233335555666666543 24578888885432 2234789999
Q ss_pred Eeccccccccc-----c--hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 284 HCSRCRIDWLQ-----R--DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 284 ~~s~~~l~~~~-----d--~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++-. .-.+.. . -..+++.+.+.|+|||.+++.....
T Consensus 156 i~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~ 198 (312)
T d1uira_ 156 IIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI 198 (312)
T ss_dssp EEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEE
T ss_pred EEeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCc
Confidence 9532 111111 1 2569999999999999999866443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00082 Score=63.68 Aligned_cols=95 Identities=16% Similarity=0.080 Sum_probs=63.8
Q ss_pred CeEEEECCCCchHHHHHh----cCCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 217 RNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~----~~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
.++||+|+|.|.-|..|+ +.+++.+|-...=.. ...+.+++.++ ++.+....++.+. .+.+||+|+| ++ +
T Consensus 67 ~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~s-RA-~- 141 (207)
T d1jsxa_ 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVR-FLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVIS-RA-F- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHH-HHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEEC-SC-S-
T ss_pred CceeeeeccCCceeeehhhhcccceEEEEecchHHHH-HHHHHHHHcCCcceeeeccchhhhc-cccccceehh-hh-h-
Confidence 579999999997666665 234555554443221 11233445576 5777777777765 3568999985 42 3
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.....++.-+...+++||.+++.-.
T Consensus 142 --~~~~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 142 --ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp --SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred --cCHHHHHHHHHHhcCCCcEEEEECC
Confidence 3567788889999999999998653
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.00035 Score=69.46 Aligned_cols=105 Identities=16% Similarity=0.120 Sum_probs=68.4
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCCC-CCCCCCceEEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-PYPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~L-pfpd~sFDlV~ 284 (615)
.+++||-||-|.|..+..+++.. ....+...++.+..++.|++. ..++.+...|+... .-..++||+|+
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 45899999999999999998651 112233335556666666543 35678888884322 22347899999
Q ss_pred eccccccccc----chHHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 285 CSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 285 ~s~~~l~~~~----d~~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
+-. .-...+ .-..+++.+.+.|+|||.+++.....+
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~ 196 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQW 196 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchh
Confidence 643 111111 113489999999999999999775543
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.00063 Score=66.11 Aligned_cols=91 Identities=12% Similarity=0.185 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhc----CCCccccCChhchhHHHHHHHHHcCCC--cEEE
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIP--STLG 266 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~----~~V~gvdis~~Dls~a~i~~A~erg~~--~~~~ 266 (615)
..|...+..++..... ......++||||||+|..+..|+. .+++|+|+++..+..+.. .++..++. +.+.
T Consensus 42 ~~~~~~i~~l~~~~~~---~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~-N~~~n~l~~~~~~~ 117 (250)
T d2h00a1 42 LNYIHWVEDLIGHQDS---DKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKK-NVEQNNLSDLIKVV 117 (250)
T ss_dssp HHHHHHHHHHHCCCCG---GGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEE
T ss_pred HHHHHHHHHHhhhhcc---CccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHH-HHHHhCCCcceeee
Confidence 3466677777653221 123446899999999988777764 367777776665555442 23333444 3444
Q ss_pred EecCCCC------CCCCCCceEEEecc
Q 007165 267 VLGTKRL------PYPSRSFELAHCSR 287 (615)
Q Consensus 267 v~d~~~L------pfpd~sFDlV~~s~ 287 (615)
..+.... ...+++||+|+|+-
T Consensus 118 ~~~~~~~~~~~~~~~~~~~fD~ivsNP 144 (250)
T d2h00a1 118 KVPQKTLLMDALKEESEIIYDFCMCNP 144 (250)
T ss_dssp ECCTTCSSTTTSTTCCSCCBSEEEECC
T ss_pred eeccHHhhhhhhhhcccCceeEEEecC
Confidence 4332221 12457899999864
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.06 E-value=0.00043 Score=69.66 Aligned_cols=105 Identities=13% Similarity=0.055 Sum_probs=67.8
Q ss_pred CCCeEEEECCCCchHHHHHhcCC-CccccCChhchhHHHHHHHHHcC---------CCcEEEEecCCCC-CCCCCCceEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHD-IIAMSLAPNDVHENQIQFALERG---------IPSTLGVLGTKRL-PYPSRSFELA 283 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~-V~gvdis~~Dls~a~i~~A~erg---------~~~~~~v~d~~~L-pfpd~sFDlV 283 (615)
.+++||-||-|.|..++.+++.. +. .+...++++..++.|++.- .++.+...|+... .-..++||+|
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~--~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVE--KVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCC--EEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcc--eEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 45889999999999999998752 22 2333355566677776542 3466777774321 1235789999
Q ss_pred Eeccccccccc----chHHHHHHHHhccCCCeEEEEEcCCCCC
Q 007165 284 HCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYA 322 (615)
Q Consensus 284 ~~s~~~l~~~~----d~~~~L~ei~RvLkPGG~Lvis~P~~~~ 322 (615)
++-. .-...+ .-..+++.+.+.|+|||.++....+.+.
T Consensus 184 I~D~-~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~ 225 (312)
T d2b2ca1 184 ITDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWL 225 (312)
T ss_dssp EECC-C-------------HHHHHHHHEEEEEEEEEECCCTTT
T ss_pred EEcC-CCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHH
Confidence 9643 111111 1145899999999999999998766653
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.01 E-value=0.00057 Score=67.45 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=69.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCC-CCCCCCCceEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSFELA 283 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~-Lpfpd~sFDlV 283 (615)
.+++||-||-|.|..++.++.. .+. .+...++++..++.|++. ..++.+...|+.. +.-.+++||+|
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~--~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVK--KATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCS--EEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcc--eEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 4578999999999999999864 222 222234445555555443 2357788877533 22235789999
Q ss_pred Eeccccccccc----chHHHHHHHHhccCCCeEEEEEcCCCCC
Q 007165 284 HCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYA 322 (615)
Q Consensus 284 ~~s~~~l~~~~----d~~~~L~ei~RvLkPGG~Lvis~P~~~~ 322 (615)
+.-. .-.... -...+++.+.+.|+|||.++....+.+.
T Consensus 153 i~D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~ 194 (274)
T d1iy9a_ 153 MVDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWF 194 (274)
T ss_dssp EESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTT
T ss_pred EEcC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccc
Confidence 9642 111111 1256999999999999999998766543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.0009 Score=61.92 Aligned_cols=91 Identities=19% Similarity=0.198 Sum_probs=58.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--------CCCCCce
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--------fpd~sFD 281 (615)
+..+||||||+.|+|+.++.+. .+.++|+.+.+. -..+.+..+|..... ...+.||
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~-----------i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP-----------IVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC-----------CTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEeccCCcceEEEEeeccccceEEEeecccccc-----------cCCceEeecccccchhhhhhhhhccCccee
Confidence 4578999999999999988753 466776655321 223455666643321 2346799
Q ss_pred EEEeccccccccc----ch-------HHHHHHHHhccCCCeEEEEEc
Q 007165 282 LAHCSRCRIDWLQ----RD-------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 282 lV~~s~~~l~~~~----d~-------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+|++-. +..... |. ...+.-+.++|++||.|++=.
T Consensus 91 lVlSD~-ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 91 VVMSDM-APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp EEEECC-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEecc-cchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 999754 333221 11 235667789999999999865
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=96.84 E-value=0.0018 Score=62.35 Aligned_cols=68 Identities=10% Similarity=0.147 Sum_probs=48.2
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
.+..+|||||||+|.++..|++. .|+++++ ++.+++..+++ ..++.+..+|+..++++......|+ ++
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~-----D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv-~N 92 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEI-----DHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIF-GN 92 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEECS-----CHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEE-EE
T ss_pred CCCCeEEEECCCchHHHHHHHhCcCceEEEee-----ccchHHHHHHHhhcccchhhhhhhhhhccccccccceee-ee
Confidence 34578999999999999999864 5666654 44555555554 3457899999988887755444455 55
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=96.79 E-value=0.00024 Score=69.57 Aligned_cols=94 Identities=21% Similarity=0.319 Sum_probs=64.4
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHh----hcccc---cccc-cccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY----DRGLI---GTVH-DWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy----~RGli---G~~h-dwce~fstYprtyDl~Ha~~~ 530 (615)
..|+|+.+|.|+++..|.+. .. +|+-++- +.-+...- ..||- -+.+ |++ .++-=+.+||+|.+..+
T Consensus 69 ~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~-~l~~~~~sfD~V~~~~~ 144 (282)
T d2o57a1 69 AKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EIPCEDNSYDFIWSQDA 144 (282)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SCSSCTTCEEEEEEESC
T ss_pred CEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhcccccccccccccccccccc-cccccccccchhhccch
Confidence 48999999999999998754 32 3444442 33333322 33442 2222 333 33323489999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
|-.+. +...+|-|+-|+|||||.++|.|
T Consensus 145 l~h~~----d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 145 FLHSP----DKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp GGGCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcc----CHHHHHHHHHHhcCCCcEEEEEE
Confidence 87553 36889999999999999999974
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=96.79 E-value=0.00032 Score=65.77 Aligned_cols=105 Identities=16% Similarity=0.241 Sum_probs=69.0
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhH----Hhhccc--ccccccccccCCCCCCccceeccccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSEI 534 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~----iy~RGl--iG~~hdwce~fstYprtyDl~Ha~~~fs~~ 534 (615)
.|+|..+|-|.|+.+|.+.-. +|+=+|- ++-+.. +-+.|+ |-.++.=+|..+.=..+||++++..++..+
T Consensus 18 rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~ 94 (231)
T d1vl5a_ 18 EVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHF 94 (231)
T ss_dssp EEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGC
T ss_pred EEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccccccc
Confidence 699999999999999986643 3333332 233332 223344 334444455544334799999999988754
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEEcC----hhHHHHHHHH
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIRDK----SSIINYIRKF 573 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iird~----~~~~~~~~~~ 573 (615)
. +.+.+|-|+-|+|+|||.++|-|. ......+...
T Consensus 95 ~----d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 133 (231)
T d1vl5a_ 95 P----NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNY 133 (231)
T ss_dssp S----CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHH
T ss_pred C----CHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHH
Confidence 2 488999999999999999999752 3344544443
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00075 Score=63.45 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=77.0
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCC-CCCchhHHhhc----cc--ccccccccccCCCCCCccceecccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVR-MSARLKIIYDR----GL--IGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~-~~~tL~~iy~R----Gl--iG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
.-..|+|+.+|.|.++..|...-.. +|+=+| +++-|...-+| |. +-.++.=-+.++.-+.+||+|.+.+++
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 3456999999999999887644222 233333 23444443222 22 111221123355446899999999998
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEcChh---------------HHHHHHHHHhhcCccc
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS---------------IINYIRKFITALKWDG 581 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~---------------~~~~~~~~~~~~~w~~ 581 (615)
..+... ++..+|-|+=|+|+|+|.++|.|... ..+++++++..-.+++
T Consensus 138 ~h~~~~--~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~i 200 (222)
T d2ex4a1 138 GHLTDQ--HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSL 200 (222)
T ss_dssp GGSCHH--HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCE
T ss_pred ccchhh--hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEE
Confidence 865432 25678999999999999999973221 3677888888777775
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.76 E-value=0.00052 Score=67.79 Aligned_cols=100 Identities=9% Similarity=0.207 Sum_probs=73.2
Q ss_pred CceeeeeeccccchhHHhhhcCC-CcEEEEeccCC-CCCchh----HHhhcccccccccccccCCCCCCccceecccccc
Q 007165 458 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLK----IIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 458 ~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~-~~~tL~----~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
..=-.|+|+.+|.||||.-+... ++-|. =++ +++.+. .+.+.||.+..+.-+.-+...|.+||.|-+.++|
T Consensus 51 ~~g~~VLDiGCG~G~~a~~~a~~~g~~v~---gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~ 127 (280)
T d2fk8a1 51 KPGMTLLDIGCGWGTTMRRAVERFDVNVI---GLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAF 127 (280)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEE---EEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCG
T ss_pred CCCCEEEEecCCchHHHHHHHHhCceeEE---EecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHH
Confidence 33447999999999999877643 54332 222 224443 3566688776666666666778999999999999
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
-.+..+ +...++-++.|+|+|||.++|.+
T Consensus 128 eh~~~~--~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 128 EHFGHE--NYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GGTCGG--GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHhhhh--hHHHHHHHHHhccCCCceEEEEE
Confidence 876533 47889999999999999999864
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.70 E-value=0.002 Score=61.94 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=58.0
Q ss_pred CCeEEEECCCCchHHHHHh--------cCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC----CCCCCceEE
Q 007165 216 IRNVLDVGCGVASFGAYLL--------SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELA 283 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~--------~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp----fpd~sFDlV 283 (615)
+++|||||++.|..+..++ +..+.++|+.+.... .+.....++.+..+|..... +....+|+|
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~-----~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlI 155 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-----IPASDMENITLHQGDCSDLTTFEHLREMAHPLI 155 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-----CCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh-----hhhccccceeeeecccccHHHHHHHHhcCCCEE
Confidence 5789999999997655443 236778877543221 11222346788888854432 345578988
Q ss_pred EecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 284 ~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+.-. -|........+ +...+|+|||++++.+.
T Consensus 156 fID~--~H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 156 FIDN--AHANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp EEES--SCSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred EEcC--CcchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 7533 23322222223 46689999999999664
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=96.65 E-value=0.00058 Score=66.22 Aligned_cols=121 Identities=13% Similarity=0.153 Sum_probs=77.6
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC---CcEEEEeccCCCCCchhHHh----hcccccccccccccCCCCCCccceecc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRMSARLKIIY----DRGLIGTVHDWCESFSTYPRTYDLLHA 527 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~---~vwvmnvvp~~~~~tL~~iy----~RGliG~~hdwce~fstYprtyDl~Ha 527 (615)
+....-.+|+|..||.|.++..|..+ .|......| .-|-..- .++.+=.++.=-+.|+-=+.+||+|.+
T Consensus 89 l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~----~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~ 164 (254)
T d1xtpa_ 89 LPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVK----HMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVI 164 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCH----HHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEE
T ss_pred CCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCH----HHHHhhhccccccccceeEEccccccccCCCccceEEe
Confidence 44456678999999999999987532 343333222 2222221 223322233223344433589999999
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEEcChh----------------HHHHHHHHHhhcCccc
Q 007165 528 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------------IINYIRKFITALKWDG 581 (615)
Q Consensus 528 ~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~----------------~~~~~~~~~~~~~w~~ 581 (615)
..+|-.+... ++..+|-|+-|.|+|||.+||.|... ...+++++++.-.+++
T Consensus 165 ~~vl~hl~d~--d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~i 232 (254)
T d1xtpa_ 165 QWTAIYLTDA--DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRV 232 (254)
T ss_dssp ESCGGGSCHH--HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCE
T ss_pred eccccccchh--hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEE
Confidence 9999876532 36788999999999999999986422 1456677776666654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=96.58 E-value=0.00021 Score=69.57 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=49.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
+..+|||||||+|.++..|++. +|++++++.... +.++++ ..++.+..+|+..++++...++.|+++
T Consensus 29 ~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~-----~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~vv~N 100 (245)
T d1yuba_ 29 ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLF-----NLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGN 100 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSS-----SSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEEEEE
T ss_pred CCCeEEEECCCccHHHHHHHhhcCceeEeeecccch-----hhhhhhhhhccchhhhhhhhhccccccceeeeEeee
Confidence 3478999999999999999754 677887766544 333333 235788888999888887777777744
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.0026 Score=64.07 Aligned_cols=97 Identities=20% Similarity=0.233 Sum_probs=64.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCC-C---CCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P---YPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~L-p---fpd~sFDlV~~s~ 287 (615)
+..+|||+-||+|.|+..|++. .|+|++.++..+..+. +.|+..++ ++.+..++.+.. + .....||+|+.--
T Consensus 212 ~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~-~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDP 290 (358)
T d1uwva2 212 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQ-QNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 290 (358)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECC
T ss_pred CCceEEEecccccccchhccccccEEEeccCcHHHHHHHH-HhHHhcccccceeeecchhhhhhhhhhhhccCceEEeCC
Confidence 3478999999999999999875 7888888876665554 33444455 578888775542 2 2346799998532
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-.- -....+..+.+. +|.-.++++-
T Consensus 291 PR~----G~~~~~~~l~~~-~~~~ivYVSC 315 (358)
T d1uwva2 291 ARA----GAAGVMQQIIKL-EPIRIVYVSC 315 (358)
T ss_dssp CTT----CCHHHHHHHHHH-CCSEEEEEES
T ss_pred CCc----cHHHHHHHHHHc-CCCEEEEEeC
Confidence 100 013456666553 7777777875
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.45 E-value=0.0011 Score=62.77 Aligned_cols=115 Identities=16% Similarity=0.241 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHh----hcccccccccc-cc
Q 007165 440 WQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGLIGTVHDW-CE 513 (615)
Q Consensus 440 W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy----~RGliG~~hdw-ce 513 (615)
+...+..+.++++ .......+.|+|+.||-|.++..|.+... +|+=+|- ++-|...- ++|+-..++.. -|
T Consensus 23 ~~~~~~~~~~~~~-~~~~~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~ 98 (251)
T d1wzna1 23 VKAEIDFVEEIFK-EDAKREVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVL 98 (251)
T ss_dssp HHHHHHHHHHHHH-HTCSSCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred HHHHHHHHHHHHH-HhcCCCCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhhh
Confidence 3344444444443 24455567899999999999999987653 6776664 35555433 44553333321 34
Q ss_pred cCCCCCCccceeccc-ccccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 514 SFSTYPRTYDLLHAW-KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 514 ~fstYprtyDl~Ha~-~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.+ .+|.+||+|... +.|..+.. -+....|-+|-|+|+|||.+||.
T Consensus 99 ~l-~~~~~fD~I~~~~~~~~~~~~--~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 99 EI-AFKNEFDAVTMFFSTIMYFDE--EDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp GC-CCCSCEEEEEECSSGGGGSCH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hc-ccccccchHhhhhhhhhcCCh--HHHHHHHHHHHHHcCCCcEEEEE
Confidence 44 368999999874 56664422 35778999999999999999984
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.39 E-value=0.0092 Score=57.40 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCchHHHHHh----cCCCccccCChhchhHHHHHH----HHHcCCC-cEEEEecCCCCCC---CCCCceE
Q 007165 215 NIRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQF----ALERGIP-STLGVLGTKRLPY---PSRSFEL 282 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~----~~~V~gvdis~~Dls~a~i~~----A~erg~~-~~~~v~d~~~Lpf---pd~sFDl 282 (615)
...+++|||+|.|.-+..|+ +.+++-+|- ....+.| +++.++. +.+....++.+.. ..++||+
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves-----~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~ 144 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDS-----LNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDI 144 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEES-----CHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecc-----hHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceE
Confidence 34689999999997666665 224444433 3333333 3444664 4555544554432 1368999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
|+|-. + .....++.-....+++||.+++.-...+ .+..+..+...+.+.+.+.
T Consensus 145 v~sRA--v---a~l~~ll~~~~~~l~~~g~~i~~KG~~~------~~El~~a~~~~~~~~~~~~ 197 (239)
T d1xdza_ 145 VTARA--V---ARLSVLSELCLPLVKKNGLFVALKAASA------EEELNAGKKAITTLGGELE 197 (239)
T ss_dssp EEEEC--C---SCHHHHHHHHGGGEEEEEEEEEEECC-C------HHHHHHHHHHHHHTTEEEE
T ss_pred EEEhh--h---hCHHHHHHHHhhhcccCCEEEEECCCCh------HHHHHHHHHHHHHcCCEEE
Confidence 99643 2 4567789999999999999998654332 1223444445556666554
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=96.28 E-value=0.0015 Score=61.60 Aligned_cols=92 Identities=23% Similarity=0.341 Sum_probs=62.0
Q ss_pred eeeeeccccchhHHhhhcCC--CcEEEEeccCCCCCchhHHhhccc--ccccccccccCCCCCCccceeccccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMSARLKIIYDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 536 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~~~tL~~iy~RGl--iG~~hdwce~fstYprtyDl~Ha~~~fs~~~~ 536 (615)
.+|+|+.+|-|.|+..|.+. .|..+..- ++-+...=.|.- +=..+.=-|.+.. |.+||+|-+.++|..+.
T Consensus 22 ~~VLDiGcG~G~~~~~l~~~g~~v~giD~s----~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~- 95 (225)
T d2p7ia1 22 GNLLELGSFKGDFTSRLQEHFNDITCVEAS----EEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHID- 95 (225)
T ss_dssp SCEEEESCTTSHHHHHHTTTCSCEEEEESC----HHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCS-
T ss_pred CcEEEEeCCCcHHHHHHHHcCCeEEEEeCc----HHHhhhhhccccccccccccccccccc-ccccccccccceeEecC-
Confidence 35999999999999999865 34443321 234444332211 1112222233433 79999999999998664
Q ss_pred CCCChhhhhhhh-cccccCCcEEEEE
Q 007165 537 RGCSFEDLLIEM-DRMLRPEGFVIIR 561 (615)
Q Consensus 537 ~~c~~~~i~~Em-dRilRp~g~~iir 561 (615)
+...+|.|+ +|+|+|||.++|.
T Consensus 96 ---d~~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 96 ---DPVALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp ---SHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHhcCCCceEEEE
Confidence 368889998 7999999999995
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=96.20 E-value=0.0031 Score=58.91 Aligned_cols=94 Identities=21% Similarity=0.394 Sum_probs=66.4
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcccccccccccccCCCCCCccceeccc-ccccccccCCC
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAW-KVFSEIEERGC 539 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~-~~fs~~~~~~c 539 (615)
.|+|+.+|-|.++-.|.+.. + .|+=+|- +.-|.+.-++|+--....=.|.++--..+||+|-+. +++..+.
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~-~--~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~---- 117 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERG-F--EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE---- 117 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTT-C--EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS----
T ss_pred EEEEECCCCchhcccccccc-e--EEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh----
Confidence 49999999999999998764 3 4455553 477888888875322221124444334899998874 5666433
Q ss_pred ChhhhhhhhcccccCCcEEEEEc
Q 007165 540 SFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 540 ~~~~i~~EmdRilRp~g~~iird 562 (615)
+...+|-|+-|+|+|||.+||..
T Consensus 118 d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 118 NKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHHHHHhhcCcCcEEEEEE
Confidence 36778889999999999999964
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.16 E-value=0.0018 Score=59.82 Aligned_cols=95 Identities=19% Similarity=0.298 Sum_probs=66.4
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----ccccccccccccCCCC---CCccceecccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GLIGTVHDWCESFSTY---PRTYDLLHAWKVFSE 533 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----GliG~~hdwce~fstY---prtyDl~Ha~~~fs~ 533 (615)
.|+|+.||-|.++..|.+... +|+-+|- ++-+.+.-++ |+.-.+ .|-..... ..+||+|.+.++|..
T Consensus 40 ~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~--~~~d~~~l~~~~~~fD~I~~~~~l~~ 114 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEF--IVGDARKLSFEDKTFDYVIFIDSIVH 114 (226)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEE--EECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccc--cccccccccccCcCceEEEEecchhh
Confidence 599999999999999987642 4565664 4666665443 332222 23322222 389999999998885
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
+.. -++..+|-|+-|.|+|||.+||.+.
T Consensus 115 ~~~--~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 115 FEP--LELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CCH--HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCh--hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 432 2477789999999999999999754
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.13 E-value=0.0086 Score=59.74 Aligned_cols=105 Identities=20% Similarity=0.155 Sum_probs=63.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEe---
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC--- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~--- 285 (615)
++.+|||++||.|.=+.+++.. .+++.|++..-+.... +.....|. ++.+...|...++..+..||.|++
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~-~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaP 194 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR-LNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 194 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHH-HHHHHHHhhccccccccccccccccccccEEEEccc
Confidence 4578999999999766666422 3566666544332222 22233354 344455566666656688999987
Q ss_pred -ccc-cccccc---------c-------hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 -SRC-RIDWLQ---------R-------DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 -s~~-~l~~~~---------d-------~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.. ++...+ + ..++|..+.+.|||||+++.++=..
T Consensus 195 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 111 111111 1 1348889999999999999988443
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=96.12 E-value=0.0012 Score=63.68 Aligned_cols=105 Identities=25% Similarity=0.370 Sum_probs=70.5
Q ss_pred cccCCceeeeeeccccchhHHhhhcCC-C-cEEEEeccCCCCCchhH----Hhhcccccccccc-cccCCCCCCccceec
Q 007165 454 VAQKNTFRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRMSARLKI----IYDRGLIGTVHDW-CESFSTYPRTYDLLH 526 (615)
Q Consensus 454 ~~~~~~~Rnvmdm~a~~ggfaaal~~~-~-vwvmnvvp~~~~~tL~~----iy~RGliG~~hdw-ce~fstYprtyDl~H 526 (615)
.++...++.|+|..+|-|.++.+|... | +-+. ++ |-|..+.. +-+.|+-.-..-- ...|..-|..||++.
T Consensus 75 ~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~-~~--D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~ 151 (253)
T d1tw3a2 75 AYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSAT-VL--EMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAII 151 (253)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEE-EE--ECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEE
T ss_pred hcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEE-Ec--cCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhhee
Confidence 456688999999999999999999743 3 2222 21 22344433 4455664322111 223556678999999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 527 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 527 a~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
..+++-.+... +...+|-|+=|.|+|||.++|-|.
T Consensus 152 ~~~vlh~~~d~--~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 152 LSFVLLNWPDH--DAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp EESCGGGSCHH--HHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred eccccccCCch--hhHHHHHHHHHhcCCCcEEEEEec
Confidence 99888754322 245789999999999999999753
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.05 E-value=0.0062 Score=55.87 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=58.0
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC---CcEEEEecC---CCCCCCCCCceEEEec
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGT---KRLPYPSRSFELAHCS 286 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~---~~Lpfpd~sFDlV~~s 286 (615)
..+|||+.||+|.++...+.+ .|+.+|.+..-+.. ..+.+...+. ...+...|. .........||+|++-
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~-ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQ-LKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHH-HHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred cceEeecccCccceeeeeeeecceeeEEeecccchhhh-HhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 357999999999999998866 45555544432211 1122222233 234444442 2223345679999964
Q ss_pred ccccccccc-hHHHHHHHH--hccCCCeEEEEEcC
Q 007165 287 RCRIDWLQR-DGILLLELD--RLLRPGGYFVYSSP 318 (615)
Q Consensus 287 ~~~l~~~~d-~~~~L~ei~--RvLkPGG~Lvis~P 318 (615)
- +|..+ ....+..+. .+|+++|.+++..+
T Consensus 123 P---PY~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 P---PFHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp C---CSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred h---hHhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 3 22222 345666664 47999999999654
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.005 Score=60.61 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=65.8
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--CCCCCceEEEe---
Q 007165 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHC--- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~----~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--fpd~sFDlV~~--- 285 (615)
++.+|||+++|.|+=+..+++ ..|++.|++..-+... .+..+..|.+....+.+....+ ...+.||.|++
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l-~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaP 180 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRV-YDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 180 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHH-HHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhH-hhhhhcccccceeeeccccccchhcccccccEEEEecc
Confidence 457899999999977666653 2467777776654332 3444555776655554433221 24478999987
Q ss_pred -ccc-ccccccc----------------hHHHHHHHHhccCCCeEEEEEcCC
Q 007165 286 -SRC-RIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 286 -s~~-~l~~~~d----------------~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|.. ++...++ ..++|..+.+.|||||+++.++=.
T Consensus 181 CSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 181 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred ccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 211 1211111 234888999999999999998833
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=96.02 E-value=0.002 Score=60.75 Aligned_cols=93 Identities=16% Similarity=0.279 Sum_probs=65.4
Q ss_pred eeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhH----Hhhccc--ccccccccccCCCCCCccceecccccccccc
Q 007165 463 VMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 535 (615)
Q Consensus 463 vmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~----iy~RGl--iG~~hdwce~fstYprtyDl~Ha~~~fs~~~ 535 (615)
|+|+.+|-|.++..|.+.- =+|+=+|-. +-|.+ +-++|+ +-.++.=.|.++-=.-+||+|.+.+.|..+.
T Consensus 20 ILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 96 (234)
T d1xxla_ 20 VLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFS 96 (234)
T ss_dssp EEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGCS
T ss_pred EEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeeceeeccc
Confidence 9999999999999998752 266666533 44433 233443 3334433444332237999999999887432
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 536 ERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 536 ~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
++..+|=|+-|+|+|||.+++.|
T Consensus 97 ----d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 97 ----DVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp ----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHeeCCCcEEEEEE
Confidence 48999999999999999999864
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.00 E-value=0.01 Score=57.36 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=56.3
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCC-cEEEEe-cCCCCCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLGVL-GTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~-d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
..+|+|+|||.|.++.+++.+ .|.+.++- .|.++.-+. ....+-+ +.+... +... .+.+..|+|+|-. +
T Consensus 67 ~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG-~d~~e~P~~-~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm-~ 141 (257)
T d2p41a1 67 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG-GPGHEEPIP-MSTYGWNLVRLQSGVDVFF--IPPERCDTLLCDI-G 141 (257)
T ss_dssp CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC-STTSCCCCC-CCSTTGGGEEEECSCCTTT--SCCCCCSEEEECC-C
T ss_pred CCeEEEecCCCChHHHHHHhhcCCCceeEEEec-CccccCCcc-ccccccccccchhhhhHHh--cCCCcCCEEEeeC-C
Confidence 357999999999999999855 23344432 222111000 0001111 122211 1222 3467899999864 2
Q ss_pred cccccch-------HHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 290 IDWLQRD-------GILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 290 l~~~~d~-------~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
-. .+++ -+++.-+.+.|+|||.|++-+-.+|
T Consensus 142 es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py 179 (257)
T d2p41a1 142 ES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY 179 (257)
T ss_dssp CC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred CC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC
Confidence 22 2222 1366777799999999999776554
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=95.98 E-value=0.0074 Score=62.45 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC-----------------CCccccCChhchhHHHHHHH
Q 007165 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----------------DIIAMSLAPNDVHENQIQFA 256 (615)
Q Consensus 194 ~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~-----------------~V~gvdis~~Dls~a~i~~A 256 (615)
...+.+.+++.. ....+|+|-+||+|.|...+.+. .+.|.|+.+....-+.....
T Consensus 149 ~Iv~~mv~ll~~--------~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~ 220 (425)
T d2okca1 149 PLIQAMVDCINP--------QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 220 (425)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred hhhHhhheeccC--------cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence 355666666652 23467999999999988766431 24455555444333333222
Q ss_pred HHcCC---CcEEEEecCCCCCCCCCCceEEEecccccccc----------------cc-hHHHHHHHHhccCCCeEEEEE
Q 007165 257 LERGI---PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL----------------QR-DGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 257 ~erg~---~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~----------------~d-~~~~L~ei~RvLkPGG~Lvis 316 (615)
. ++. ...+...|.... .+...||+|+++-- +... .+ ...++..+...|+|||++++.
T Consensus 221 l-~g~~~~~~~i~~~d~l~~-~~~~~fD~Ii~NPP-fg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI 297 (425)
T d2okca1 221 L-HGIGTDRSPIVCEDSLEK-EPSTLVDVILANPP-FGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV 297 (425)
T ss_dssp H-TTCCSSCCSEEECCTTTS-CCSSCEEEEEECCC-SSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred h-cCCccccceeecCchhhh-hcccccceEEecCC-CCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEE
Confidence 2 232 234555554433 34578999998531 2110 01 124889999999999999999
Q ss_pred cCCC
Q 007165 317 SPEA 320 (615)
Q Consensus 317 ~P~~ 320 (615)
.|+.
T Consensus 298 ~p~~ 301 (425)
T d2okca1 298 LPDN 301 (425)
T ss_dssp EEHH
T ss_pred echH
Confidence 8863
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.0023 Score=60.82 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=67.0
Q ss_pred ccCCceeeeeeccccchhHHhhhcC-CCcEEEEeccCCCCCchhHHhh----ccccc----ccccccccCCCCCCcccee
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMSARLKIIYD----RGLIG----TVHDWCESFSTYPRTYDLL 525 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~-~~vwvmnvvp~~~~~tL~~iy~----RGliG----~~hdwce~fstYprtyDl~ 525 (615)
+..+ -.|+|..+|.|+++..|.. .++.|.=|=| ++.-+-+.-+ .||=. ..-|+-+-+ -+..||++
T Consensus 31 l~pg--~~VLDiGCG~G~~~~~la~~~~~~v~GvD~--s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~--~~~~fD~v 104 (245)
T d1nkva_ 31 MKPG--TRILDLGSGSGEMLCTWARDHGITGTGIDM--SSLFTAQAKRRAEELGVSERVHFIHNDAAGYV--ANEKCDVA 104 (245)
T ss_dssp CCTT--CEEEEETCTTCHHHHHHHHHTCCEEEEEES--CHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC--CSSCEEEE
T ss_pred CCCC--CEEEEEcCCCCHHHHHHHHhcCCEEEEEec--ccchhhHHHHHHHHhhccccchhhhhHHhhcc--ccCceeEE
Confidence 4444 3699999999999998865 4677644322 2233333223 35421 233444433 36889999
Q ss_pred cccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 526 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 526 Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
++.+.+..+. +...+|-||-|+|||||.++|.+
T Consensus 105 ~~~~~~~~~~----d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 105 ACVGATWIAG----GFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp EEESCGGGTS----SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred EEEehhhccC----CHHHHHHHHHHHcCcCcEEEEEe
Confidence 9999887543 47889999999999999999975
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.0074 Score=56.96 Aligned_cols=120 Identities=9% Similarity=0.049 Sum_probs=75.0
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCC-CCCchhHHhhc------------------cccccccccc--------
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVR-MSARLKIIYDR------------------GLIGTVHDWC-------- 512 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~-~~~tL~~iy~R------------------GliG~~hdwc-------- 512 (615)
=.-|+|+.+|-|.++.-+...... +|+=+| +++.+.+.-++ ++-|.+..+.
T Consensus 52 g~~vLDlGcG~G~~~~~~~~~~~~--~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 52 GDTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp EEEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCEEEEECCCCCHhHHHHhccccC--cEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 345999999999988766655443 455554 23444443222 1222222221
Q ss_pred -----------ccC---CCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcChh-------------
Q 007165 513 -----------ESF---STYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS------------- 565 (615)
Q Consensus 513 -----------e~f---stYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~------------- 565 (615)
+.. +.-+.+||+|-+..++..+....=++..++-+|-|.|||||.+|+.+-..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~ 209 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 209 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence 111 22246899999888877443221235568899999999999999975221
Q ss_pred ---HHHHHHHHHhhcCccc
Q 007165 566 ---IINYIRKFITALKWDG 581 (615)
Q Consensus 566 ---~~~~~~~~~~~~~w~~ 581 (615)
..+.|++++..-.+++
T Consensus 210 ~~~~~~~~~~~l~~aGf~v 228 (257)
T d2a14a1 210 VALEKGEVEQAVLDAGFDI 228 (257)
T ss_dssp CCCCHHHHHHHHHHTTEEE
T ss_pred cCCCHHHHHHHHHHCCCEE
Confidence 3678888888877764
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.79 E-value=0.008 Score=55.13 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=82.7
Q ss_pred cCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----ccccc----c-cccccccCCCCCCcccee
Q 007165 456 QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGLIG----T-VHDWCESFSTYPRTYDLL 525 (615)
Q Consensus 456 ~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGliG----~-~hdwce~fstYprtyDl~ 525 (615)
....-.+|+|+.+|.|.++.+|.+.- . +|.-++- +.-+...-+ -|+-+ + ..|+-+.+ .+.+||+|
T Consensus 49 ~~~~~~~VLDiGcG~G~~~~~la~~~-~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~--~~~~fD~I 123 (194)
T d1dusa_ 49 VVDKDDDILDLGCGYGVIGIALADEV-K--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV--KDRKYNKI 123 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGGS-S--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC--TTSCEEEE
T ss_pred CcCCCCeEEEEeecCChhHHHHHhhc-c--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh--ccCCceEE
Confidence 34455789999999999999987542 2 4554553 344444322 13322 1 23554543 36899999
Q ss_pred cccccccccccCCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhhcCccceeeccccccCcCCCCCceEEEEE
Q 007165 526 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAK 604 (615)
Q Consensus 526 Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~l~~~ 604 (615)
-++..|..... .+..++-++.|.|+|||.++|- ....-...+...++..-+++.... + .+.=+||-++
T Consensus 124 i~~~p~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~---~-----~~gf~vl~a~ 192 (194)
T d1dusa_ 124 ITNPPIRAGKE---VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVT---I-----KGGYRVLKSK 192 (194)
T ss_dssp EECCCSTTCHH---HHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEE---E-----ETTEEEEEEE
T ss_pred EEcccEEecch---hhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEE---e-----cCCcEEEEEE
Confidence 99888763222 1456788899999999987663 222334556666666666664221 1 2345788887
Q ss_pred e
Q 007165 605 K 605 (615)
Q Consensus 605 k 605 (615)
|
T Consensus 193 K 193 (194)
T d1dusa_ 193 K 193 (194)
T ss_dssp C
T ss_pred E
Confidence 7
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0012 Score=64.15 Aligned_cols=96 Identities=11% Similarity=0.187 Sum_probs=60.6
Q ss_pred eeeeccccchhHHhhhcC-----CCcEEEEeccCCCC-CchhHHhhc-----ccccccccccc-cC---------CCCCC
Q 007165 462 NVMDMNSNLGGFAAALKD-----KDVWVMNVAPVRMS-ARLKIIYDR-----GLIGTVHDWCE-SF---------STYPR 520 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~-----~~vwvmnvvp~~~~-~tL~~iy~R-----GliG~~hdwce-~f---------stYpr 520 (615)
||+|+.+|-|.|+..|.+ .+--...++=++-. +.|...-+| .+-.+--+|.. .+ +.=+.
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 699999999999776642 12223344444432 334433322 22222223321 11 11258
Q ss_pred ccceecccccccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 521 TYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 521 tyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
+||+|++.++|-.+. ++...|-+|-|+|+|||.++|-
T Consensus 123 ~fD~I~~~~~l~~~~----d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 123 KWDFIHMIQMLYYVK----DIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp CEEEEEEESCGGGCS----CHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEEccceecCC----CHHHHHHHHHhhCCCCCEEEEE
Confidence 999999999988543 4889999999999999988775
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.64 E-value=0.0024 Score=63.13 Aligned_cols=110 Identities=8% Similarity=0.191 Sum_probs=71.1
Q ss_pred HHHhhhccccCCceeeeeeccccchhHHhhhc-CC--CcEEEEeccCCCCCchhHHhhcccccccccccccCCCCCCccc
Q 007165 447 YWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK-DK--DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYD 523 (615)
Q Consensus 447 y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~-~~--~vwvmnvvp~~~~~tL~~iy~RGliG~~hdwce~fstYprtyD 523 (615)
..+.++ ++.+ .-|+|+.+|.||+|--+. .. .|=.+++.|....-.-.-+-+.||.+-.+==+.-|..-|-+||
T Consensus 54 ~~~~l~--l~~G--~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD 129 (285)
T d1kpga_ 54 ALGKLG--LQPG--MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVD 129 (285)
T ss_dssp HHTTTT--CCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCS
T ss_pred HHHHcC--CCCC--CEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccc
Confidence 334443 5555 449999999999986543 23 4444554443322222345677876644422333444467899
Q ss_pred eecccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 524 LLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 524 l~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
-|=+-+.|-.+..+ +...++-|+.|+|+|||.++|.+
T Consensus 130 ~i~si~~~eh~~~~--~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 130 RIVSIGAFEHFGHE--RYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp EEEEESCGGGTCTT--THHHHHHHHHHHSCTTCEEEEEE
T ss_pred ceeeehhhhhcCch--hHHHHHHHHHhhcCCCCcEEEEE
Confidence 88888888765322 36788999999999999998854
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=95.58 E-value=0.0046 Score=60.36 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=64.9
Q ss_pred CCceeeeeeccccchhHHhhhcCC---CcEEEEeccCCC-CCchhHHh----hcccccc--cccccccCCCCCCccceec
Q 007165 457 KNTFRNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRM-SARLKIIY----DRGLIGT--VHDWCESFSTYPRTYDLLH 526 (615)
Q Consensus 457 ~~~~Rnvmdm~a~~ggfaaal~~~---~vwvmnvvp~~~-~~tL~~iy----~RGliG~--~hdwce~fstYprtyDl~H 526 (615)
-.+=+.|+|..+|.|.++..|.+. ..- |+=+|- ++-|...- +.|+--. ..|- +.++ +|-+||+|+
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~---v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~-~~~~-~~~~fD~v~ 99 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSK---YTGIDSGETLLAEARELFRLLPYDSEFLEGDA-TEIE-LNDKYDIAI 99 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCE---EEEEECCHHHHHHHHHHHHSSSSEEEEEESCT-TTCC-CSSCEEEEE
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCE---EEEEecchhHhhhhhccccccccccccccccc-cccc-ccCCceEEE
Confidence 345568999999999998887653 222 233342 23333322 2233111 2243 3333 478999999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 527 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 527 a~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
+.++|..+. +...+|-||-|+|+|||++|+.|.
T Consensus 100 ~~~~l~~~~----d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 100 CHAFLLHMT----TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp EESCGGGCS----SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EehhhhcCC----CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 999998554 367899999999999999999763
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.09 E-value=0.0029 Score=61.86 Aligned_cols=101 Identities=18% Similarity=0.321 Sum_probs=64.4
Q ss_pred CCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHh----hccccccccc-------cc---ccCCCCCCc
Q 007165 457 KNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGLIGTVHD-------WC---ESFSTYPRT 521 (615)
Q Consensus 457 ~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy----~RGliG~~hd-------wc---e~fstYprt 521 (615)
....++|+|+.+|-|.++..|.+.. + +|+=+|- ++-|.+.- ++++-..++. |- ..++ +..+
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~g-~--~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 129 (292)
T d1xvaa_ 54 QHGCHRVLDVACGTGVDSIMLVEEG-F--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDG 129 (292)
T ss_dssp HTTCCEEEESSCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTC
T ss_pred hcCCCEEEEecCCCcHHHHHHHHcC-C--eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCC
Confidence 3345789999999999999998774 3 6777774 35555432 2333322221 21 1121 3468
Q ss_pred cceeccc-ccccccccCCC---ChhhhhhhhcccccCCcEEEEE
Q 007165 522 YDLLHAW-KVFSEIEERGC---SFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 522 yDl~Ha~-~~fs~~~~~~c---~~~~i~~EmdRilRp~g~~iir 561 (615)
||++-+. +.|..+..... +...+|-||-|+|+|||.+||.
T Consensus 130 fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 130 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 9999764 35554432112 2455899999999999999994
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=95.03 E-value=0.0039 Score=60.22 Aligned_cols=108 Identities=20% Similarity=0.234 Sum_probs=71.3
Q ss_pred cccCCceeeeeeccccchhHHhhhcCC-C---cEEEEeccCCCCCchhHHhhccccccccccc-ccCCCCCCccceeccc
Q 007165 454 VAQKNTFRNVMDMNSNLGGFAAALKDK-D---VWVMNVAPVRMSARLKIIYDRGLIGTVHDWC-ESFSTYPRTYDLLHAW 528 (615)
Q Consensus 454 ~~~~~~~Rnvmdm~a~~ggfaaal~~~-~---vwvmnvvp~~~~~tL~~iy~RGliG~~hdwc-e~fstYprtyDl~Ha~ 528 (615)
.++...++.|+|..+|.|.++++|.+. | +=++.. |......-..+-+.|+-....--. ..|..-|-+||++...
T Consensus 76 ~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~ 154 (256)
T d1qzza2 76 AYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLS 154 (256)
T ss_dssp TSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEE
T ss_pred cCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcc
Confidence 356678999999999999999999743 3 333331 322222233345666644221111 2344567789999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
.+|-.+... +...||-++=|.|+|||.++|-|..
T Consensus 155 ~vLh~~~d~--~~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 155 FVLLNWSDE--DALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp SCGGGSCHH--HHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccccCcH--HHHHHHHHHHhhcCCcceeEEEEec
Confidence 888754322 2467788999999999999998753
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=95.01 E-value=0.0073 Score=56.40 Aligned_cols=97 Identities=11% Similarity=0.147 Sum_probs=74.8
Q ss_pred eeeeccccchhHHhhhcC---CCcEEEEeccCCC-CCchhHHhhc----ccccccccccccCCCCC-Cccceeccccccc
Q 007165 462 NVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLKIIYDR----GLIGTVHDWCESFSTYP-RTYDLLHAWKVFS 532 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~---~~vwvmnvvp~~~-~~tL~~iy~R----GliG~~hdwce~fstYp-rtyDl~Ha~~~fs 532 (615)
.|+|..+|-|..+.+|.. .|-+ +|+=+|- ++-|.+.-++ +....+|--|..+..+| ..+|++.+..++.
T Consensus 42 ~vLDlGCGtG~~~~~l~~~~~~~~~--~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~ 119 (225)
T d1im8a_ 42 NVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 119 (225)
T ss_dssp EEEEESCTTCHHHHHHHHTCCCSSC--EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGG
T ss_pred EEEEeccchhhHHHHHHHhhcCCCC--ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeecc
Confidence 699999999999877753 3544 5666664 4677765443 78888888888777776 6889999988887
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
.+... +...+|-||=|.|+|||.+|+.|
T Consensus 120 ~~~~~--d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 120 FLPPE--DRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp GSCGG--GHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccChh--hHHHHHHHHHHhCCCCceeeccc
Confidence 44221 46789999999999999999975
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.79 E-value=0.012 Score=58.12 Aligned_cols=111 Identities=8% Similarity=0.139 Sum_probs=72.7
Q ss_pred HHHHHhhhccccCCceeeeeeccccchhHHhhhc-CCCcEEEEeccCC-CCCchhH----HhhcccccccccccccCCCC
Q 007165 445 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK-DKDVWVMNVAPVR-MSARLKI----IYDRGLIGTVHDWCESFSTY 518 (615)
Q Consensus 445 ~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~-~~~vwvmnvvp~~-~~~tL~~----iy~RGliG~~hdwce~fstY 518 (615)
+...+.++ +..|. .|+|..+|.||+|.-+. ..++ +|+=++ +++.+.. +-+.||....+-=+.-+..-
T Consensus 51 ~~~~~~l~--l~~G~--~VLDiGCG~G~~~~~~a~~~g~---~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~ 123 (291)
T d1kpia_ 51 KLALDKLN--LEPGM--TLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF 123 (291)
T ss_dssp HHHHHTTC--CCTTC--EEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred HHHHHhcC--CCCCC--EEEEecCcchHHHHHHHHhcCc---ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc
Confidence 33334443 44443 69999999999998665 4465 333332 2233333 45668876655444445555
Q ss_pred CCccceecccccccccccC-----CCChhhhhhhhcccccCCcEEEEEc
Q 007165 519 PRTYDLLHAWKVFSEIEER-----GCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 519 prtyDl~Ha~~~fs~~~~~-----~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+-+||-|=+-+.|-++... .=+...++-++.|+|+|||.+++.+
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 6789998888888765321 0135689999999999999998864
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=94.77 E-value=0.028 Score=51.60 Aligned_cols=99 Identities=15% Similarity=0.061 Sum_probs=65.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcC-CCcEEEEecCCCCC-----CCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP-----YPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg-~~~~~~v~d~~~Lp-----fpd~sFDlV~~s 286 (615)
++..++|..+|.|..+..+++. +|+|+| ..+.+++.|+++. ....+.......+. +..+.+|.|+.-
T Consensus 18 ~g~~~vD~T~G~GGhs~~iL~~~~~viaiD-----~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~D 92 (182)
T d1wg8a2 18 PGGVYVDATLGGAGHARGILERGGRVIGLD-----QDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILAD 92 (182)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCEEEEEE-----SCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHhcccCcEEEEh-----hhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEE
Confidence 4578999999999999999876 455554 4555566666542 24556655544332 334679999864
Q ss_pred cccccc-cc-------chHHHHHHHHhccCCCeEEEEEcC
Q 007165 287 RCRIDW-LQ-------RDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 287 ~~~l~~-~~-------d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
..+-.+ +. .....|.....+|+|||.+++.+-
T Consensus 93 LGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 93 LGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp CSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 311111 11 223478888999999999998773
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.015 Score=57.33 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=71.0
Q ss_pred HHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCC-CCCchhHHhhccc---ccccccccccCC
Q 007165 442 VRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLKIIYDRGL---IGTVHDWCESFS 516 (615)
Q Consensus 442 ~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~-~~~tL~~iy~RGl---iG~~hdwce~fs 516 (615)
.|.+.|.+.+.......+=..|+|+.+|.|.++..+... ..-|.-+=+.. +......+-..|+ |=+.|--.+-+.
T Consensus 18 ~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~ 97 (311)
T d2fyta1 18 IRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH 97 (311)
T ss_dssp HHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC
T ss_pred HHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhc
Confidence 444567665532222222245999999999987766543 23333222111 1123455666665 334444455556
Q ss_pred CCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 007165 517 TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 517 tYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
.-+..+|+|=+.-+++.+... -.+..++-.++|.|+|||.+|-
T Consensus 98 ~~~~~~D~Ivse~~~~~~~~e-~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 98 LPVEKVDVIISEWMGYFLLFE-SMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CSCSCEEEEEECCCBTTBTTT-CHHHHHHHHHHHHEEEEEEEES
T ss_pred CccccceEEEEeeeeeecccc-cccHHHHHHHHhcCCCCcEEec
Confidence 556899999887666633322 3466777789999999999984
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=94.46 E-value=0.0086 Score=54.83 Aligned_cols=93 Identities=19% Similarity=0.324 Sum_probs=66.3
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHH----hhccc---ccccccccccCCCCCCccceecccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII----YDRGL---IGTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~i----y~RGl---iG~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
.|+|+.+|-|.++..|.+.- | .|+=+|- +..|-.+ -..|+ -....|.++.. ++.+||+|.+..+|..
T Consensus 33 rvLDiGcG~G~~~~~la~~g-~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANG-Y--DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT--FDGEYDFILSTVVMMF 107 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC--CCCCEEEEEEESCGGG
T ss_pred cEEEECCCCCHHHHHHHHHh-h--hhccccCcHHHHHHHHHHhhhccccchhhhheeccccc--ccccccEEEEeeeeec
Confidence 49999999999999998763 3 3444443 3444432 23343 33445555543 5789999999999986
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
+... +...++-++-|.|+|||.+++.
T Consensus 108 ~~~~--~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 108 LEAQ--TIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp SCTT--HHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCHH--HHHHHHHHHHHHcCCCcEEEEE
Confidence 5332 4678999999999999999886
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.027 Score=54.30 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=63.4
Q ss_pred CCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhccc-ccccccccccCCCCCCccceecccccccc
Q 007165 457 KNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 457 ~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~RGl-iG~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
..+-..|+|+.+|-|.|+.+|.+. |-+ +|+=+|- ++-|...-+|+- +...+.=.+.++.-..+||+|.+...+..
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~--~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 159 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEI--TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK 159 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCC--EEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH
Confidence 345568999999999999999754 332 2333442 355555555432 11122223444444589999987554331
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEc-ChhHHHHHHH
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRK 572 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird-~~~~~~~~~~ 572 (615)
+-||.|+|||||.+|+-. ..+.+.+++.
T Consensus 160 -----------~~e~~rvLkpgG~l~~~~p~~~~l~el~~ 188 (268)
T d1p91a_ 160 -----------AEELARVVKPGGWVITATPGPRHLMELKG 188 (268)
T ss_dssp -----------HHHHHHHEEEEEEEEEEEECTTTTHHHHT
T ss_pred -----------HHHHHHHhCCCcEEEEEeeCCcchHHHHH
Confidence 468999999999999964 2333444443
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.067 Score=52.41 Aligned_cols=104 Identities=12% Similarity=0.018 Sum_probs=59.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCCCC---CCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYP---SRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lpfp---d~sFDlV~~ 285 (615)
++.+|||++||.|+=+.++++. .+++.|+++.-+.. ..+.+...|+. +.+...|...+... .+.||.|++
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~-l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLAS-MATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHH-HHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHH-HHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence 4578999999999877776532 46677665543322 22333444654 56666666555422 257999987
Q ss_pred c----cc-ccc------cc--cc----------hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 S----RC-RID------WL--QR----------DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 s----~~-~l~------~~--~d----------~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
- .. ++. |. .+ ...++..+. .|+|||.++.++=..
T Consensus 173 DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 173 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred cCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 2 11 111 10 00 112444455 479999999887443
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.07 E-value=0.075 Score=53.72 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=35.1
Q ss_pred CCCCCCCCCceEEEecccccccccc---------------------------------hHHHHHHHHhccCCCeEEEEEc
Q 007165 271 KRLPYPSRSFELAHCSRCRIDWLQR---------------------------------DGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 271 ~~Lpfpd~sFDlV~~s~~~l~~~~d---------------------------------~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
..--||+++.|++|++. ++||+.. ...+|+-=.+-|+|||.++++.
T Consensus 131 Y~rLfP~~Slh~~~Ss~-alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSY-SLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSCCSCTTCBSCEEEES-CTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhcCCCCceEEeeehh-hhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 33348899999999998 6999642 1236666677899999999976
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=94.02 E-value=0.0083 Score=57.16 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=66.5
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcc----c---ccccccccccCCC-CCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----L---IGTVHDWCESFST-YPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RG----l---iG~~hdwce~fst-YprtyDl~Ha~~~f 531 (615)
..|+|+.+|-|+++..+.+...- +|+=+|- ++.|...-+|- . +-.++.=+..-+. -..+||+|.+.+.+
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l 103 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 103 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence 47999999999999888765432 4555663 46777766552 1 1111211211111 24689999887655
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEE--cChhHHHHH
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR--DKSSIINYI 570 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iir--d~~~~~~~~ 570 (615)
-.+-...=.+..++-||-|+|+|||.+|+- |...++...
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~ 144 (252)
T d1ri5a_ 104 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERY 144 (252)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHH
Confidence 532111113667899999999999999874 433444433
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.75 E-value=0.031 Score=55.14 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=66.5
Q ss_pred HHHHHHHhhhc--cccCCceeeeeeccccchhHHhhhcCC---CcEEEEeccCCCCCchhHHhhccccc---cccccccc
Q 007165 443 RVVDYWKQMKT--VAQKNTFRNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRMSARLKIIYDRGLIG---TVHDWCES 514 (615)
Q Consensus 443 ~v~~y~~~l~~--~~~~~~~Rnvmdm~a~~ggfaaal~~~---~vwvmnvvp~~~~~tL~~iy~RGliG---~~hdwce~ 514 (615)
|...|.+.+.. .+..+ ..|+|+.+|.|.++-.+.+. .|..+-.-|. +.....++-..|+-+ +.+.--+.
T Consensus 17 R~~~y~~ai~~~~~~~~~--~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~ 93 (316)
T d1oria_ 17 RTLTYRNSMFHNRHLFKD--KVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEE 93 (316)
T ss_dssp HHHHHHHHHHTCHHHHTT--CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHHHhccccCCc--CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHH
Confidence 44456555421 12233 45999999999876444432 3333221110 112334455557643 33333344
Q ss_pred CCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 007165 515 FSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 515 fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
+..-+..+|+|-+.-+...+.. .-.++.++-+++|.|+|||.+|-
T Consensus 94 ~~~~~~~~D~ivs~~~~~~l~~-e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 94 VELPVEKVDIIISEWMGYCLFY-ESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCCSSSCEEEEEECCCBBTBTB-TCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccccceeEEEeeeeeeeeecc-HHHHHHHHHHHHhcCCCCeEEEe
Confidence 5555689999987655553332 24588899999999999999874
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=93.68 E-value=0.048 Score=57.73 Aligned_cols=113 Identities=17% Similarity=0.120 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC----------------------CCccccCChhchhHH
Q 007165 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----------------------DIIAMSLAPNDVHEN 251 (615)
Q Consensus 194 ~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~----------------------~V~gvdis~~Dls~a 251 (615)
...+.+.+++.. ....+|+|-.||+|.|.....+. .+.|.++ ...
T Consensus 151 ~Iv~~mv~ll~~--------~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~-----~~~ 217 (524)
T d2ar0a1 151 PLIKTIIHLLKP--------QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL-----VPG 217 (524)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEES-----CHH
T ss_pred chhHhhhhcccC--------ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhcc-----CHH
Confidence 345666677652 23467999999999987655321 1234444 444
Q ss_pred HHHHHHH----cCCCc------EEEEecCCCCC-CCCCCceEEEecccccc--c-----------ccch-HHHHHHHHhc
Q 007165 252 QIQFALE----RGIPS------TLGVLGTKRLP-YPSRSFELAHCSRCRID--W-----------LQRD-GILLLELDRL 306 (615)
Q Consensus 252 ~i~~A~e----rg~~~------~~~v~d~~~Lp-fpd~sFDlV~~s~~~l~--~-----------~~d~-~~~L~ei~Rv 306 (615)
+...|+. .+... .+...+....+ .....||+|+++-- +. + ..+. -.++..+.+.
T Consensus 218 ~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPP-fg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~ 296 (524)
T d2ar0a1 218 TRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPP-FGSAAGTNITRTFVHPTSNKQLCFMQHIIET 296 (524)
T ss_dssp HHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCC-CTTCSSCCCCSCCSSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCC-ccccccccchhhhccccccccHHHHHHHHHh
Confidence 4444432 23222 12222221111 23467999997531 11 0 0111 2488999999
Q ss_pred cCCCeEEEEEcCCC
Q 007165 307 LRPGGYFVYSSPEA 320 (615)
Q Consensus 307 LkPGG~Lvis~P~~ 320 (615)
|+|||++++..|..
T Consensus 297 Lk~gGr~aiIlP~~ 310 (524)
T d2ar0a1 297 LHPGGRAAVVVPDN 310 (524)
T ss_dssp EEEEEEEEEEEEHH
T ss_pred ccccCcEEEEEehH
Confidence 99999999999864
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.42 E-value=0.032 Score=52.07 Aligned_cols=141 Identities=13% Similarity=0.162 Sum_probs=78.3
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC----CcEEEEeccCCCCCchhHHhhcccccccccccccCCCCCCccceeccccc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK----DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~----~vwvmnvvp~~~~~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
+..+. .|+|+.||-|+++..|.+. .|+-.-.-|.--..-....-.|+.+-..+-=++....|+..+|. ++-+
T Consensus 54 lkpg~--~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~--vd~v 129 (209)
T d1nt2a_ 54 LRGDE--RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEK--VDLI 129 (209)
T ss_dssp CCSSC--EEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCC--EEEE
T ss_pred CCCCC--EEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccce--EEEE
Confidence 44444 6999999999998887642 24443322211111122334556555555444544556666554 3444
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEcC----------hhHHHHHHHHH-hhcCccceeeccccccCcCCCCCce
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK----------SSIINYIRKFI-TALKWDGWLSEVEPRIDALSSSEER 599 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~----------~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~e~ 599 (615)
|..+.. .-+...++.|+.|+|+|||.++|-+. ..+...+.+.+ .++... ...+ -.| ..++-
T Consensus 130 ~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~---E~i~--L~P--~~~~H 201 (209)
T d1nt2a_ 130 YQDIAQ-KNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIV---KHGS--LMP--YHRDH 201 (209)
T ss_dssp EECCCS-TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEE---EEEE--CTT--TCTTE
T ss_pred EecccC-hhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEE---EEEc--cCC--CccCc
Confidence 554322 23567789999999999999998642 23344443333 333332 1111 223 34677
Q ss_pred EEEEEecc
Q 007165 600 VLIAKKKL 607 (615)
Q Consensus 600 ~l~~~k~~ 607 (615)
++|.-++|
T Consensus 202 ~~v~~~r~ 209 (209)
T d1nt2a_ 202 IFIHAYRF 209 (209)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 88877664
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=93.31 E-value=0.043 Score=52.85 Aligned_cols=69 Identities=7% Similarity=0.074 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcC---CCcEEEEe
Q 007165 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG---IPSTLGVL 268 (615)
Q Consensus 194 ~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~ 268 (615)
..++.+.+.+.. .+.+.|||||||+|.++..|++. +|++++ ++..+++..+++. .++.+..+
T Consensus 8 ~~~~~Iv~~~~~--------~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiE-----iD~~l~~~L~~~~~~~~~~~ii~~ 74 (252)
T d1qyra_ 8 FVIDSIVSAINP--------QKGQAMVEIGPGLAALTEPVGERLDQLTVIE-----LDRDLAARLQTHPFLGPKLTIYQQ 74 (252)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEEECCTTTTTHHHHHTTCSCEEEEC-----CCHHHHHHHHTCTTTGGGEEEECS
T ss_pred HHHHHHHHhcCC--------CCCCEEEEECCCchHHHHHHHccCCceEEEE-----eccchhHHHHHHhhhccchhHHhh
Confidence 345556666653 23467999999999999999875 555664 4455555555442 35678888
Q ss_pred cCCCCCC
Q 007165 269 GTKRLPY 275 (615)
Q Consensus 269 d~~~Lpf 275 (615)
|+..+++
T Consensus 75 D~l~~~~ 81 (252)
T d1qyra_ 75 DAMTFNF 81 (252)
T ss_dssp CGGGCCH
T ss_pred hhhhhcc
Confidence 8776654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=92.97 E-value=0.021 Score=55.17 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=67.2
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHh----hccccccc--ccccccCCCCCCccceeccccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGLIGTV--HDWCESFSTYPRTYDLLHAWKVFSEI 534 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy----~RGliG~~--hdwce~fstYprtyDl~Ha~~~fs~~ 534 (615)
.|+|+.+|-|.++.++..... .|+=+|- +.-+...- ..|+-..+ -|.-+.++. .+||+|.|+-++..
T Consensus 123 ~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~--~~fD~V~ani~~~~- 196 (254)
T d2nxca1 123 KVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPF--GPFDLLVANLYAEL- 196 (254)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGG--CCEEEEEEECCHHH-
T ss_pred EEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccc--cccchhhhcccccc-
Confidence 699999999998887764431 2333332 23333322 23432111 122233332 58999998765542
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEEcC-hhHHHHHHHHHhhcCccc
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDG 581 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iird~-~~~~~~~~~~~~~~~w~~ 581 (615)
+.+++=++-|.|+|||.+|+.+- .+-.+.|.+.+....|+.
T Consensus 197 ------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~ 238 (254)
T d2nxca1 197 ------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRP 238 (254)
T ss_dssp ------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEE
T ss_pred ------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEE
Confidence 56777789999999999998642 122466777777778876
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=92.76 E-value=0.072 Score=49.81 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=62.7
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhhc----cccc-ccc-cccccCCCCCCccceeccc-cccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIG-TVH-DWCESFSTYPRTYDLLHAW-KVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~R----GliG-~~h-dwce~fstYprtyDl~Ha~-~~fs 532 (615)
++|+|+.||-|.++..|.+... +|+=+|.. +-|.+.-+| |+-- .++ |.. .|+. +++||+|=+. +.|.
T Consensus 39 ~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~-~~~~-~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 39 DDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS-NLNI-NRKFDLITCCLDSTN 113 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG-GCCC-SCCEEEEEECTTGGG
T ss_pred CeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchh-hhcc-cccccccceeeeeee
Confidence 5799999999999999987653 56666643 556665544 4322 222 333 3443 7899988542 4444
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEE
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
.+.. .=++..+|-+|-|.|+|||.+|+
T Consensus 114 ~~~~-~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 114 YIID-SDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GCCS-HHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCC-HHHHHHHHHHHHHhCCCCeEEEE
Confidence 3221 11367789999999999999997
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.75 E-value=0.042 Score=54.44 Aligned_cols=98 Identities=12% Similarity=0.096 Sum_probs=61.1
Q ss_pred eeeeeccccchhHHhhhcCCC-cEEEEeccCC-CCCchhHHhhccccc---ccccccccCCCCCCccceecccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKD-VWVMNVAPVR-MSARLKIIYDRGLIG---TVHDWCESFSTYPRTYDLLHAWKVFSEIE 535 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~-vwvmnvvp~~-~~~tL~~iy~RGliG---~~hdwce~fstYprtyDl~Ha~~~fs~~~ 535 (615)
..|+|+.+|.|.++..+.+.. .-|.-|=... +.-....+-..|+.. +.|.-.+....-+..+|+|-+.-++..+.
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~ 119 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLL 119 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBS
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecceeec
Confidence 369999999998876655332 2332221111 012344566777744 33444444444457899998876665332
Q ss_pred cCCCChhhhhhhhcccccCCcEEE
Q 007165 536 ERGCSFEDLLIEMDRMLRPEGFVI 559 (615)
Q Consensus 536 ~~~c~~~~i~~EmdRilRp~g~~i 559 (615)
. --.++.++.+++|+|+|||.+|
T Consensus 120 ~-e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 120 Y-ESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp T-TCCHHHHHHHHHHHEEEEEEEE
T ss_pred c-chhHHHHHHHHHhccCCCeEEE
Confidence 2 2357889999999999999987
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.56 E-value=0.1 Score=46.09 Aligned_cols=95 Identities=14% Similarity=0.038 Sum_probs=59.9
Q ss_pred CCCeEEEECCC-CchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC---------CCCCCceEEE
Q 007165 215 NIRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---------YPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp---------fpd~sFDlV~ 284 (615)
+..+||-+||| .|.++..++.. .+..+...+.++..++.|++.|....+..-....-. ...+.+|+|+
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~--~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vi 103 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKA--YGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTI 103 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEE
T ss_pred CCCEEEEEcccccchhhHhhHhh--hcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceee
Confidence 44689999988 55666666543 233444446777788899988866544322111110 0124689887
Q ss_pred ecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
-.- .....+..+.++|+|||.+++...
T Consensus 104 d~~-------g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 104 DCS-------GNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp ECS-------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred ecC-------CChHHHHHHHHHHhcCCceEEEec
Confidence 432 123578888999999999998763
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.38 E-value=0.023 Score=53.33 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=60.8
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcc------cccccccccccCCCCC-Cccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG------LIGTVHDWCESFSTYP-RTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RG------liG~~hdwce~fstYp-rtyDl~Ha~~~fs 532 (615)
.+|+|+.+|.|++|..|.+... -+|+=++- +..|.+.-++. ...+.+|+.+-....| .+||+|--+...+
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~ 132 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 132 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence 5799999999999999987643 13333332 34455443332 2334555554444444 5788875444333
Q ss_pred cc-ccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 533 EI-EERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 533 ~~-~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.. ..+.-+....+-|+=|+|||||.+++-
T Consensus 133 ~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 133 SEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 11 111223566889999999999999884
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.35 E-value=0.043 Score=52.00 Aligned_cols=134 Identities=11% Similarity=0.221 Sum_probs=76.8
Q ss_pred eeeeccccchhHHhhhcCC-----CcEEEEeccCCCCCchhHHhhcccc-ccccccccc--CCCCCCccceecccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGLI-GTVHDWCES--FSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~-----~vwvmnvvp~~~~~tL~~iy~RGli-G~~hdwce~--fstYprtyDl~Ha~~~fs~ 533 (615)
.|+|+.||-|+++..|.+. .|+-.-.-|.-........-.|+.+ -+..|=..+ +.-.+-..|.++.+-...
T Consensus 76 ~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~- 154 (227)
T d1g8aa_ 76 SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQP- 154 (227)
T ss_dssp EEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCST-
T ss_pred EEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEcccc-
Confidence 5999999999999988642 4665544443333344444455533 233332221 111223456665432111
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEc----------ChhHHHHHHHHHhhcCccceeeccccccCcCCCCCceEEEE
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRD----------KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIA 603 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird----------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~l~~ 603 (615)
=+...++-+|.|.|+|||.++|-. ...+..++++++.. .++.. ..+ +-.|. ....-+.|+
T Consensus 155 -----~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~ii-e~i--~L~p~-~~~H~~vv~ 224 (227)
T d1g8aa_ 155 -----TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVI-ERL--NLEPY-EKDHALFVV 224 (227)
T ss_dssp -----THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEE-EEE--ECTTT-SSSEEEEEE
T ss_pred -----chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEE-EEE--cCCCC-CCceEEEEE
Confidence 124568999999999999999852 24566777777654 55541 222 12333 223467788
Q ss_pred Eec
Q 007165 604 KKK 606 (615)
Q Consensus 604 ~k~ 606 (615)
+|+
T Consensus 225 rK~ 227 (227)
T d1g8aa_ 225 RKT 227 (227)
T ss_dssp ECC
T ss_pred EeC
Confidence 875
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.16 E-value=0.044 Score=55.86 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=58.6
Q ss_pred CCeEEEECCCCchHHHHHh-cC---CCccccCChhchhHHHHHHHHH----cCCC----------------cEEEEecCC
Q 007165 216 IRNVLDVGCGVASFGAYLL-SH---DIIAMSLAPNDVHENQIQFALE----RGIP----------------STLGVLGTK 271 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~-~~---~V~gvdis~~Dls~a~i~~A~e----rg~~----------------~~~~v~d~~ 271 (615)
..+|||..||+|..+...+ +. .|+..|+++ ..++.+++ .+.. +.+...|+.
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~-----~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~ 120 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISE-----DAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN 120 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCH-----HHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCH-----HHHHHHHHHHHhcCccccccccccccccccceeEeehhhhh
Confidence 4689999999999998544 33 344555544 44444432 2321 223333332
Q ss_pred CCCC-CCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 272 RLPY-PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 272 ~Lpf-pd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+.. ....||+|..-- ...+..+|..+.+.++.||.|.++..+
T Consensus 121 ~~~~~~~~~fDvIDiDP-----fGs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 121 RLMAERHRYFHFIDLDP-----FGSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HHHHHSTTCEEEEEECC-----SSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hhhHhhcCcCCcccCCC-----CCCcHHHHHHHHHHhccCCEEEEEecC
Confidence 2211 235699998432 334566999999999999999998754
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.00 E-value=0.12 Score=50.47 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc------CCCcEEE
Q 007165 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER------GIPSTLG 266 (615)
Q Consensus 195 y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er------g~~~~~~ 266 (615)
..+.+.+.+.. .+..+|||||+|+|.++..|++. +|+++++.. .+++..++. ..++.+.
T Consensus 9 i~~kIv~~~~~--------~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~-----~l~~~L~~~~~~~~~~~~~~~i 75 (278)
T d1zq9a1 9 IINSIIDKAAL--------RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDP-----RLVAELHKRVQGTPVASKLQVL 75 (278)
T ss_dssp HHHHHHHHTCC--------CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCH-----HHHHHHHHHHTTSTTGGGEEEE
T ss_pred HHHHHHHHhCC--------CCCCEEEEECCCchHHHHHHHhcCCcEEEEEEcc-----chhHHHHHHHhhhccccchhhh
Confidence 44455555542 23478999999999999999864 566665544 333433332 1246778
Q ss_pred EecCCCCCCCCCCceEEEe
Q 007165 267 VLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 267 v~d~~~Lpfpd~sFDlV~~ 285 (615)
.+|+....++ .++.|++
T Consensus 76 ~~D~l~~~~~--~~~~vV~ 92 (278)
T d1zq9a1 76 VGDVLKTDLP--FFDTCVA 92 (278)
T ss_dssp ESCTTTSCCC--CCSEEEE
T ss_pred HHHHhhhhhh--hhhhhhc
Confidence 8887776654 3456663
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.74 E-value=0.021 Score=54.87 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=78.3
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc--ccccccccc------------------------
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR--GLIGTVHDW------------------------ 511 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R--GliG~~hdw------------------------ 511 (615)
+=+.|+|..+|-|.+.+-+..+ |+.+|+=+|- ++.+.++-.+ .-.+. .||
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~--~~~~v~~~D~S~~~i~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGA-FNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTC-CCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcc--cCCeEEEEeCCHHHHHHHHHHHhcCccc-ccchhhhhhhhhhccccchhhhhHHHh
Confidence 4457999999999775433332 4557887774 4666655321 00111 111
Q ss_pred ---------c--------ccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh----------
Q 007165 512 ---------C--------ESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS---------- 564 (615)
Q Consensus 512 ---------c--------e~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~---------- 564 (615)
| .+....|..||++-+..+++.+-.+..++..++-+|-|+|||||.+|+.+..
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~ 210 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA 210 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCc
Confidence 1 1223345689999988888766555567888999999999999999997431
Q ss_pred ------hHHHHHHHHHhhcCccc
Q 007165 565 ------SIINYIRKFITALKWDG 581 (615)
Q Consensus 565 ------~~~~~~~~~~~~~~w~~ 581 (615)
-..+.|+++++.---++
T Consensus 211 ~~~~~~~t~e~v~~~l~~aGf~v 233 (263)
T d2g72a1 211 RLTVVPVSEEEVREALVRSGYKV 233 (263)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEE
T ss_pred ccccCCCCHHHHHHHHHHCCCeE
Confidence 13577888887766654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.27 E-value=0.061 Score=50.91 Aligned_cols=116 Identities=15% Similarity=0.124 Sum_probs=71.4
Q ss_pred eeeeccccchhHHhhhcCC----CcEEEEeccCCCCCchhHHhhccccc-ccccccccCCCCCCccceeccccccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDK----DVWVMNVAPVRMSARLKIIYDRGLIG-TVHDWCESFSTYPRTYDLLHAWKVFSEIEE 536 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~----~vwvmnvvp~~~~~tL~~iy~RGliG-~~hdwce~fstYprtyDl~Ha~~~fs~~~~ 536 (615)
.|+|..||-|.++..|.+. .|+-+.+-|.--..-....-.|+.+- +..|...+...-+-++|..-....+..
T Consensus 77 ~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~--- 153 (230)
T d1g8sa_ 77 KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQ--- 153 (230)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCS---
T ss_pred EEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccccc---
Confidence 4999999999998888642 46777666543222233344445433 344554443322345554333333332
Q ss_pred CCCChhhhhhhhcccccCCcEEEEEc----------ChhHHHHHHHHHhhcCccc
Q 007165 537 RGCSFEDLLIEMDRMLRPEGFVIIRD----------KSSIINYIRKFITALKWDG 581 (615)
Q Consensus 537 ~~c~~~~i~~EmdRilRp~g~~iird----------~~~~~~~~~~~~~~~~w~~ 581 (615)
..+...++.|+.|+|+|||.++|-+ ...+.+++.+.++.-..+.
T Consensus 154 -~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~i 207 (230)
T d1g8sa_ 154 -PNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKI 207 (230)
T ss_dssp -TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEE
T ss_pred -hHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 2457888999999999999998852 2345677777777666665
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.36 E-value=0.027 Score=50.25 Aligned_cols=93 Identities=17% Similarity=0.195 Sum_probs=55.3
Q ss_pred CCCeEEEECCC-CchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCC-CCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCG-VASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~L-pfpd~sFDlV~~s~~~ 289 (615)
++.+||-+|+| .|.++..+++. +|+++ +.++..++.+++.|....+...+.... .-..+.||+|+..-..
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~-----~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVI-----SRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEE-----ESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCEEEEECCCCcchhHHHHhhhcccccccc-----ccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence 45789999998 56666666543 44444 444556678888886543322221111 1123579988754311
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.+ . ..+....++|+|||++++..
T Consensus 102 ~~-~----~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 102 LT-D----IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp ST-T----CCTTTGGGGEEEEEEEEECC
T ss_pred Cc-c----chHHHHHHHhhccceEEEec
Confidence 11 1 12456788999999999865
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.14 E-value=0.16 Score=47.83 Aligned_cols=92 Identities=17% Similarity=0.284 Sum_probs=52.5
Q ss_pred EEEEecCCCC--CCCCCCceEEEeccc---c-------cccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHH
Q 007165 264 TLGVLGTKRL--PYPSRSFELAHCSRC---R-------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIW 331 (615)
Q Consensus 264 ~~~v~d~~~L--pfpd~sFDlV~~s~~---~-------l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w 331 (615)
.+.++|.... .++++++|+|+++-- . ..|.......+.++.|+|||||.+++.....+..........
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~ 85 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLI 85 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHH
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchh
Confidence 3555663322 357899999998631 0 122333466889999999999999987644332211111122
Q ss_pred HHHHHHHhhcceEEEEeeCceEEEeccC
Q 007165 332 NAMYDLLKSMCWKIVSKKDQTVIWAKPI 359 (615)
Q Consensus 332 ~~l~~La~~l~W~l~~~~~~~aiwqKP~ 359 (615)
..+..+.....|.+. +..+|.++.
T Consensus 86 ~~~~~~~~~~~~~~~----~~i~~~k~~ 109 (279)
T d1eg2a_ 86 SIISHMRQNSKMLLA----NLIIWNYPN 109 (279)
T ss_dssp HHHHHHHHHCCCEEE----EEEEEECSC
T ss_pred hHHHHHHhccCceee----eeeeecccc
Confidence 333444555555443 345676664
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.70 E-value=0.13 Score=45.65 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=56.6
Q ss_pred CCCeEEEECC--CCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--------CCCCCceEEE
Q 007165 215 NIRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGC--GtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--------fpd~sFDlV~ 284 (615)
++.+||-.|+ |.|..+..++.. .+..+.....++...+.+++.|....+ |..+.. ...+.||+|+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~--~G~~vi~~~~~~~~~~~~~~~Ga~~vi---~~~~~~~~~~i~~~t~~~g~d~v~ 102 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARA--YGLKILGTAGTEEGQKIVLQNGAHEVF---NHREVNYIDKIKKYVGEKGIDIII 102 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHTTCSEEE---ETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEeccccccccccccccc--cCcccccccccccccccccccCccccc---ccccccHHHHhhhhhccCCceEEe
Confidence 4578999997 455666666643 122333333455566888888765433 222211 1346799998
Q ss_pred ecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.... ...+.+..++|+|||.++...
T Consensus 103 d~~g--------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 103 EMLA--------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp ESCH--------HHHHHHHHHHEEEEEEEEECC
T ss_pred eccc--------HHHHHHHHhccCCCCEEEEEe
Confidence 6431 246888899999999999854
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=89.67 E-value=0.19 Score=44.89 Aligned_cols=94 Identities=22% Similarity=0.269 Sum_probs=57.6
Q ss_pred CCCeEEEECCC-CchHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEecCCC------C-C-CCCCCceEEE
Q 007165 215 NIRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKR------L-P-YPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d~~~------L-p-fpd~sFDlV~ 284 (615)
++.+||-+|+| .|.++..++.. .+. .+...+.++...+.+++.|....+...+... + . .....||+|+
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~--~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARS--LGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHH--TTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCEEEEECCCccchhheecccc--cccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 45789999987 35666666644 222 3444466777788898887644332211100 0 0 1234599987
Q ss_pred ecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-.-. . ...+....++|+|||++++..
T Consensus 106 d~vG-~------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 106 EATG-D------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp ECSS-C------TTHHHHHHHHEEEEEEEEECC
T ss_pred ecCC-c------hhHHHHHHHHhcCCCEEEEEe
Confidence 4321 1 236788899999999998764
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=87.41 E-value=0.11 Score=48.23 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=53.5
Q ss_pred ccCCceeeeeeccccchhHHhhhc---CCC--cEEEEeccCCCCCchhHHhhcccccccccccccCCCCC--Cccceecc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALK---DKD--VWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYP--RTYDLLHA 527 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~---~~~--vwvmnvvp~~~~~tL~~iy~RGliG~~hdwce~fstYp--rtyDl~Ha 527 (615)
++.+. +|+|..+|.|.++|.|. ... |+....-|.-....-..+-.-|+-.+-.-...++..+| .+||.|+.
T Consensus 73 l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~ 150 (213)
T d1dl5a1 73 LDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFV 150 (213)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred ccccc--eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhh
Confidence 45544 89999999999998884 333 44443332211111111222233233223344555555 57999998
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEE
Q 007165 528 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 528 ~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
.+.+..+ -+ ++=|.|+|||.+|+
T Consensus 151 ~~~~~~~-------p~---~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 151 TVGVDEV-------PE---TWFTQLKEGGRVIV 173 (213)
T ss_dssp CSBBSCC-------CH---HHHHHEEEEEEEEE
T ss_pred hccHHHh-------HH---HHHHhcCCCcEEEE
Confidence 8766532 22 23356999999987
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=87.03 E-value=0.29 Score=43.68 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=56.9
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEecCCCCC------CCCCCceEEEec
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRLP------YPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp------fpd~sFDlV~~s 286 (615)
++.+||=+|||. |.++..+++. .+. .+...|.++...+.|++.|....+...+ +... .....||+|+-.
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~--~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~-~~~~~~v~~~t~g~G~D~vid~ 103 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKL--RGAGRIIGVGSRPICVEAAKFYGATDILNYKN-GHIEDQVMKLTNGKGVDRVIMA 103 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHT--TTCSCEEEECCCHHHHHHHHHHTCSEEECGGG-SCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCEEEEEcCCcchhhhhhhhhc--ccccccccccchhhhHHHHHhhCccccccccc-hhHHHHHHHHhhccCcceEEEc
Confidence 346788899986 6777777653 121 2333356677778888888543322111 1110 123459998743
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-. . ...+.+..++|||||.+++..
T Consensus 104 ~g-~------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 104 GG-G------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp SS-C------TTHHHHHHHHEEEEEEEEECC
T ss_pred cC-C------HHHHHHHHHHHhcCCEEEEEe
Confidence 31 1 236788889999999999865
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.53 E-value=0.22 Score=46.13 Aligned_cols=114 Identities=12% Similarity=0.002 Sum_probs=71.5
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhhcc-c------cc-----------------ccccccccCC
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG-L------IG-----------------TVHDWCESFS 516 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~RG-l------iG-----------------~~hdwce~fs 516 (615)
-|+|..+|-|-.+..|.+.-- +|+=+|.. .-+-....+- . +. ...|.-+--.
T Consensus 48 rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~ 124 (229)
T d2bzga1 48 RVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPR 124 (229)
T ss_dssp EEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGG
T ss_pred EEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccc
Confidence 499999999999999987643 45556643 3332222210 0 00 0112212124
Q ss_pred CCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh------------hHHHHHHHHHhhcCccc
Q 007165 517 TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS------------SIINYIRKFITALKWDG 581 (615)
Q Consensus 517 tYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~------------~~~~~~~~~~~~~~w~~ 581 (615)
.+.-+||+|...++|-.+... ..+.++-+|-|+|||||.+++-... -.-++++.+... .|++
T Consensus 125 ~~~~~fd~i~~~~~l~~~~~~--~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i 198 (229)
T d2bzga1 125 TNIGKFDMIWDRGALVAINPG--DRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNI 198 (229)
T ss_dssp SCCCCEEEEEESSSTTTSCGG--GHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred cccCceeEEEEEEEEEeccch--hhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEE
Confidence 566789999999888765322 3678899999999999986664211 135668888766 4665
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=85.53 E-value=0.38 Score=44.26 Aligned_cols=113 Identities=11% Similarity=0.192 Sum_probs=70.0
Q ss_pred eeeeccccchhHHhhhcC-CCcEEEEeccCCC-CC----chhHHhhcccccc--cc----cccccCCCCCCccceecccc
Q 007165 462 NVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SA----RLKIIYDRGLIGT--VH----DWCESFSTYPRTYDLLHAWK 529 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~-~~vwvmnvvp~~~-~~----tL~~iy~RGliG~--~h----dwce~fstYprtyDl~Ha~~ 529 (615)
-|+|..+|.|.|++.|.. .|-+ ||+-++- ++ ...-+-++||=-+ ++ +.=+.|. +-++|.++...
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~--~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~--~~~~d~v~i~f 107 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDI--NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE--PGEVKRVYLNF 107 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTS--EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC--TTSCCEEEEES
T ss_pred eEEEEEecCcHHHHHHHHhCCCC--cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccC--chhhhcccccc
Confidence 489999999999999963 2433 5666653 23 3333566676322 11 1112233 46788776544
Q ss_pred cccccc----cCCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhhcC
Q 007165 530 VFSEIE----ERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALK 578 (615)
Q Consensus 530 ~fs~~~----~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~~~ 578 (615)
..--.+ ++|=--...|-||-|+|+|||.+.|+ |..+..+.+.+.+....
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~ 161 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG 161 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCC
Confidence 332111 12211257888999999999999886 77787787777776544
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.28 E-value=0.24 Score=43.35 Aligned_cols=92 Identities=12% Similarity=0.085 Sum_probs=54.7
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC-----CCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp-----fpd~sFDlV~~s~~ 288 (615)
++.+||=+|+|. |..+..+++. .+..+...+.++..++.+++.|....+...+ ++.. ...+.+|.|.+...
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~--~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~-~~~~~~~~~~~~g~~~~i~~~~~ 103 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARA--MGLHVAAIDIDDAKLELARKLGASLTVNARQ-EDPVEAIQRDIGGAHGVLVTAVS 103 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHTTCSEEEETTT-SCHHHHHHHHHSSEEEEEECCSC
T ss_pred CCCEEEEeeccccHHHHHHHHHH--cCCccceecchhhHHHhhhccCccccccccc-hhHHHHHHHhhcCCccccccccc
Confidence 356788899874 4455555543 2344445567777788898888644332111 1110 11233455554331
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
...+....+.|+|||++++..
T Consensus 104 --------~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 104 --------NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp --------HHHHHHHHTTEEEEEEEEECC
T ss_pred --------chHHHHHHHHhcCCcEEEEEE
Confidence 346888899999999999865
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=82.25 E-value=0.24 Score=43.60 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=53.4
Q ss_pred CCCeEEEECCCC-chHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
++.+||=+|+|. |.++..++.. +++++ +.+....+++++.|....+...+........+.||+|+-.-. -
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~-----~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g-~ 103 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAF-----TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA-A 103 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEE-----ESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS-S
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhh-----ccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee-c
Confidence 457899999863 5566666543 33333 333444577888776544322111111122357998874321 1
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
...+....++|+|||.+++..
T Consensus 104 ------~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 104 ------PHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp ------CCCHHHHHTTEEEEEEEEECC
T ss_pred ------chhHHHHHHHHhcCCEEEEec
Confidence 124677789999999999865
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=82.14 E-value=1.1 Score=40.51 Aligned_cols=98 Identities=14% Similarity=0.029 Sum_probs=59.2
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCC--------CCCCceEEEe
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY--------PSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpf--------pd~sFDlV~~ 285 (615)
++.+||-+|||. |..+..++... -+..+...|.++..+++|++.|.... .+...-++ ....+|+++-
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~~Ga~~~---~~~~~~~~~~~i~~~t~g~g~D~vid 100 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQGFEIA---DLSLDTPLHEQIAALLGEPEVDCAVD 100 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCEEE---ETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhhccccEE---EeCCCcCHHHHHHHHhCCCCcEEEEE
Confidence 457899999997 55555555321 11123333566777889998886432 22222111 2346898884
Q ss_pred ccccc------cc---ccchHHHHHHHHhccCCCeEEEEEc
Q 007165 286 SRCRI------DW---LQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 286 s~~~l------~~---~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.- .. ++ .......+..+.+++||||.+++..
T Consensus 101 ~v-G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 101 AV-GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp CC-CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred Cc-cccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 32 11 11 1123468999999999999999875
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=81.85 E-value=0.78 Score=42.05 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=72.2
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCCC-----CchhHHhhccc--ccccccccccCC-CC-CCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-----ARLKIIYDRGL--IGTVHDWCESFS-TY-PRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-----~tL~~iy~RGl--iG~~hdwce~fs-tY-prtyDl~Ha~~~ 530 (615)
..|+|..+|-|.|...|... |-. |++-++-. ..+.-+-+.|| |-++|.=-+-+. -+ +-++|.||...-
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~--~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDI--NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTS--EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCC--ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 46999999999999988632 332 55555532 23344566776 333332111121 11 468888885432
Q ss_pred cc---c-cccCCCChhhhhhhhcccccCCcEEEE-EcChhHHHHHHHHHhhcCccc
Q 007165 531 FS---E-IEERGCSFEDLLIEMDRMLRPEGFVII-RDKSSIINYIRKFITALKWDG 581 (615)
Q Consensus 531 fs---~-~~~~~c~~~~i~~EmdRilRp~g~~ii-rd~~~~~~~~~~~~~~~~w~~ 581 (615)
-- . -.++|=--...|-++.|+|+|||.++| .|..+..+.+........|..
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~ 166 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKL 166 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccc
Confidence 11 0 012222236788899999999999988 577777777766666665543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.67 E-value=0.39 Score=44.79 Aligned_cols=134 Identities=15% Similarity=0.051 Sum_probs=76.4
Q ss_pred ccCCceeeeeeccccchhHHhhhcC-----CCcEEEEeccCCCCCchhHHhhccc---cccc-ccccccCCC-----CCC
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKD-----KDVWVMNVAPVRMSARLKIIYDRGL---IGTV-HDWCESFST-----YPR 520 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~-----~~vwvmnvvp~~~~~tL~~iy~RGl---iG~~-hdwce~fst-----Ypr 520 (615)
+...+-+||++..++.|=-|++|.. -.+...=.-|.........+-.-|+ |-+. -|-.|..+. .+.
T Consensus 55 ~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~ 134 (219)
T d2avda1 55 ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG 134 (219)
T ss_dssp HHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred HHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccC
Confidence 4556688999999999876666642 1233322222211112222322333 1111 133343322 267
Q ss_pred ccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcChh----------------HHHHHHHHHhhcCccceee
Q 007165 521 TYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------------IINYIRKFITALKWDGWLS 584 (615)
Q Consensus 521 tyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~----------------~~~~~~~~~~~~~w~~~~~ 584 (615)
+||||..++--+ ...+.+-++=+.|||||.+|+.|-.- +-+-.+.|.+.-+|++.
T Consensus 135 ~fD~ifiD~dk~-------~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~-- 205 (219)
T d2avda1 135 TFDVAVVDADKE-------NCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYIS-- 205 (219)
T ss_dssp CEEEEEECSCST-------THHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEE--
T ss_pred CccEEEEeCCHH-------HHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEE--
Confidence 899999887444 23444555568999999999976521 22334556677888873
Q ss_pred ccccccCcCCCCCceEEEEEe
Q 007165 585 EVEPRIDALSSSEERVLIAKK 605 (615)
Q Consensus 585 ~~~~~~~~~~~~~e~~l~~~k 605 (615)
.+ |. .+.|+||+|
T Consensus 206 ll-----Pi---gdGl~ia~K 218 (219)
T d2avda1 206 LL-----PL---GDGLTLAFK 218 (219)
T ss_dssp EE-----CS---TTCEEEEEE
T ss_pred Ee-----ec---CCeeEEEEe
Confidence 22 32 356999998
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=81.57 E-value=0.66 Score=42.66 Aligned_cols=73 Identities=14% Similarity=0.035 Sum_probs=43.3
Q ss_pred CCCCCceEEEeccc-------------ccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhc
Q 007165 275 YPSRSFELAHCSRC-------------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (615)
Q Consensus 275 fpd~sFDlV~~s~~-------------~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l 341 (615)
++++++|+|+++-- .-+|.......+.++.|+|+|||.+++.... . ....+.......
T Consensus 19 lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~------~---~~~~~~~~~~~~ 89 (256)
T d1g60a_ 19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP------F---NCAFICQYLVSK 89 (256)
T ss_dssp SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH------H---HHHHHHHHHHHT
T ss_pred CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc------h---hhhhhhhhhhcc
Confidence 46788898887531 0111222345889999999999998865421 1 122233334455
Q ss_pred ceEEEEeeCceEEEeccCC
Q 007165 342 CWKIVSKKDQTVIWAKPIS 360 (615)
Q Consensus 342 ~W~l~~~~~~~aiwqKP~~ 360 (615)
.|... +..+|.|+..
T Consensus 90 g~~~~----~~iiW~k~~~ 104 (256)
T d1g60a_ 90 GMIFQ----NWITWDKRDG 104 (256)
T ss_dssp TCEEE----EEEEECCCCS
T ss_pred cceee----eeeEeeeccc
Confidence 66544 3568988654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.34 E-value=0.59 Score=41.00 Aligned_cols=94 Identities=15% Similarity=0.062 Sum_probs=57.7
Q ss_pred CCCeEEEECCCCc-hHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--------CCCCCceEEE
Q 007165 215 NIRNVLDVGCGVA-SFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG-~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--------fpd~sFDlV~ 284 (615)
+..+||=+|||.. .++..++.. .+. .+...|.++..+++|++.|....+... .+... -....+|+|+
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~--~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~-~~~~~~~~~~~~~~~g~g~Dvvi 102 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKA--MGAAQVVVTDLSATRLSKAKEIGADLVLQIS-KESPQEIARKVEGQLGCKPEVTI 102 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHHTTCSEEEECS-SCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCEEEEECCCccHHHHHHHHHH--cCCceEEeccCCHHHHHHHHHhCCccccccc-ccccccccccccccCCCCceEEE
Confidence 3467999999755 444444432 111 333446777888899988865433321 11110 0124689887
Q ss_pred ecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
-.-. -...+....+.+++||++++...
T Consensus 103 d~~G-------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 103 ECTG-------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp ECSC-------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred eccC-------CchhHHHHHHHhcCCCEEEEEec
Confidence 5431 23478899999999999999763
|