Citrus Sinensis ID: 007201
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 613 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LQL2 | 614 | Nitrate transporter 1.5 O | yes | no | 0.965 | 0.964 | 0.706 | 0.0 | |
| Q8GXN2 | 589 | Nitrate transporter 1.8 O | no | no | 0.929 | 0.967 | 0.717 | 0.0 | |
| Q3E9B5 | 609 | Putative peptide/nitrate | no | no | 0.861 | 0.866 | 0.602 | 0.0 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.911 | 0.980 | 0.456 | 1e-142 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.900 | 0.943 | 0.432 | 1e-134 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.923 | 0.959 | 0.410 | 1e-129 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.911 | 0.980 | 0.407 | 1e-129 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.862 | 0.970 | 0.388 | 1e-120 | |
| Q9M1I2 | 555 | Probable peptide/nitrate | no | no | 0.866 | 0.956 | 0.364 | 1e-106 | |
| Q9SZY4 | 577 | Nitrate transporter 1.4 O | no | no | 0.929 | 0.987 | 0.376 | 1e-104 |
| >sp|Q9LQL2|PTR14_ARATH Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/607 (70%), Positives = 493/607 (81%), Gaps = 15/607 (2%)
Query: 7 CNEVIVKEKIKNDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVG 66
C E+ K+ +K + E T DG VD +GRP+I+ +G W+AGI+IL+NQGLATLAFFGVG
Sbjct: 3 CLEIYNKDTMKKKEGEEETRDGTVDYYGRPSIRSNSGQWVAGIVILLNQGLATLAFFGVG 62
Query: 67 VNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIG 126
VNLVLFLTRV+ QNNADAANNVSKWTGTVYIFSL+GAFLSDSYWGRYKTCAIFQ IFVIG
Sbjct: 63 VNLVLFLTRVLQQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIG 122
Query: 127 LVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGAD 186
L SLS+SSY FL++P GCGDE PCGSHS + + +FY SIYL ALG GGYQPNIAT GAD
Sbjct: 123 LSSLSLSSYMFLIRPRGCGDEVTPCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLGAD 182
Query: 187 QFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALI 246
QFDEE PKEG+SKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWAS GSA + LI
Sbjct: 183 QFDEEHPKEGYSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIGLI 242
Query: 247 LFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGA 306
LFL+GTPRYR+FKPTGNPLSR CQV+VAAT+K V+ + ++ K S N
Sbjct: 243 LFLVGTPRYRYFKPTGNPLSRFCQVLVAATKKSSVEAPLRGREEMYDGDSEGKNASVNTG 302
Query: 307 RNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLP 366
R I+HT FKFLDKAA IT + +DK D NPW LC VTQVEEVKCILRL+P
Sbjct: 303 RRIVHTDEFKFLDKAAYITARDLDDKKQ-------DSVNPWRLCPVTQVEEVKCILRLMP 355
Query: 367 IWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLD 426
IWLCTI+YSVVFTQMASLFVEQGAAM T++S F IPPASMSSFDILSVA FIF+YRRVL+
Sbjct: 356 IWLCTIIYSVVFTQMASLFVEQGAAMNTSVSDFKIPPASMSSFDILSVALFIFLYRRVLE 415
Query: 427 PLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTL 486
P+ R +K+G++G TEL RMG+GLVIA++AMI+AG+VE +RLKY+ K C C+ +S+L
Sbjct: 416 PVANRF-KKNGSKGITELHRMGIGLVIAVIAMIAAGIVECYRLKYADKSCTHCDG-SSSL 473
Query: 487 SIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTI 546
SIFWQ PQY LIGASEVFMYVGQLEFFN Q PDGLKSFGSALCM S+S+GN+VSSLLVT+
Sbjct: 474 SIFWQAPQYSLIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMMSMSMGNFVSSLLVTM 533
Query: 547 VMKISTR---PGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFEERTVGD 603
V+KIST PGWIP NLNKGHLDRFYFLLAALT+ DL +YI CA+WYK I+ E + D
Sbjct: 534 VVKISTEDHMPGWIPRNLNKGHLDRFYFLLAALTSIDLVVYIACAKWYKPIQLEGK---D 590
Query: 604 NAHDIID 610
D+ D
Sbjct: 591 EMQDMSD 597
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Low-affinity proton-dependent bidirectional nitrate transporter. Involved in nitrate loading into xylem and not in nitrate uptake. Not involved in histidine or dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GXN2|PTR47_ARATH Nitrate transporter 1.8 OS=Arabidopsis thaliana GN=NRT1.8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/584 (71%), Positives = 471/584 (80%), Gaps = 14/584 (2%)
Query: 17 KNDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRV 76
K Q E CT DG+VDRHG PAI+ TG W+ ILILVNQGLATLAFFGVGVNLVLFLTRV
Sbjct: 4 KVRQFEVCTQDGSVDRHGNPAIRANTGKWLTAILILVNQGLATLAFFGVGVNLVLFLTRV 63
Query: 77 VGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYA 136
+GQ+NA+AANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA FV GL+ LS+S+ A
Sbjct: 64 MGQDNAEAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQASFVAGLMMLSLSTGA 123
Query: 137 FLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEG 196
LL+PSGCG E +PC HS+ LFYLS+YL ALG GGYQPNIATFGADQFD ED EG
Sbjct: 124 LLLEPSGCGVEDSPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGADQFDAEDSVEG 183
Query: 197 HSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYR 256
HSKIAFFSYFYLALNLGSLFSNT+LGYFED+G W LGFWASAGSA L+LFLIGTP+YR
Sbjct: 184 HSKIAFFSYFYLALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTPKYR 243
Query: 257 HFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFK 316
HF P +P SR CQV+VAATRK K+ + ++ +L Y+ +T G + ILHT+GF+
Sbjct: 244 HFTPRESPWSRFCQVLVAATRKAKIDVHHEELNL--YD----SETQYTGDKKILHTKGFR 297
Query: 317 FLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSV 376
FLD+AA++T + +K G +PW LC+VTQVEEVKC+LRLLPIWLCTILYSV
Sbjct: 298 FLDRAAIVTPDDEAEKVESG-----SKYDPWRLCSVTQVEEVKCVLRLLPIWLCTILYSV 352
Query: 377 VFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKS 436
VFTQMASLFV QGAAMKTNI F IP +SMSSFDILSVA FIF YRR LDPL RL +
Sbjct: 353 VFTQMASLFVVQGAAMKTNIKNFRIPASSMSSFDILSVAFFIFAYRRFLDPLFARLNKTE 412
Query: 437 GTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYV 496
+G TELQRMG+GLVIAIMAMISAG+VEI RLK + + S +STLSIFWQ+PQY+
Sbjct: 413 RNKGLTELQRMGIGLVIAIMAMISAGIVEIHRLKNKEPESATSISSSSTLSIFWQVPQYM 472
Query: 497 LIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRP-- 554
LIGASEVFMYVGQLEFFN QAP GLKSF SALCM SISLGNYVSSLLV+IVMKIST
Sbjct: 473 LIGASEVFMYVGQLEFFNSQAPTGLKSFASALCMASISLGNYVSSLLVSIVMKISTTDDV 532
Query: 555 -GWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFE 597
GWIP NLNKGHL+RFYFLLA LT AD +Y+ICA+WYKYIK E
Sbjct: 533 HGWIPENLNKGHLERFYFLLAGLTAADFVVYLICAKWYKYIKSE 576
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Low-affinity nitrate transporter. Involved in nitrate removal from xylem sap. Not involved in oligopeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E9B5|PTR51_ARATH Putative peptide/nitrate transporter At5g19640 OS=Arabidopsis thaliana GN=At5g19640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/564 (60%), Positives = 409/564 (72%), Gaps = 36/564 (6%)
Query: 42 TGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLL 101
G W I++LVNQGLATLAFFGVGVNLVLFLTRV+GQ NA+AANNVSKWTGTVY+FSL+
Sbjct: 60 NGGWTNAIILLVNQGLATLAFFGVGVNLVLFLTRVMGQGNAEAANNVSKWTGTVYMFSLV 119
Query: 102 GAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMAL 161
GAFLSDSYWGRY TC IFQ IFVIG+ LS S+ FL+KP GCGD C SSL +A+
Sbjct: 120 GAFLSDSYWGRYLTCTIFQVIFVIGVGLLSFVSWFFLIKPRGCGDGDLECNPPSSLGVAI 179
Query: 162 FYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTIL 221
FYLS+YL A G GG+QP +ATFGADQ D++ +SK AFFSYFY ALN+G+LFSNTIL
Sbjct: 180 FYLSVYLVAFGYGGHQPTLATFGADQLDDDK----NSKAAFFSYFYFALNVGALFSNTIL 235
Query: 222 GYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKV 281
YFED+G+W GF S GSA +AL+ FL T +YR+ KP GNPL R+ QV VA RKW V
Sbjct: 236 VYFEDKGLWTEGFLVSLGSAIVALVAFLAPTRQYRYVKPCGNPLPRVAQVFVATARKWSV 295
Query: 282 QISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENI 341
D H+L YE +G +++ G+R I H+ F FLD+AAVIT +ND+N
Sbjct: 296 VRPGDPHEL--YELEG-PESAIKGSRKIFHSTKFLFLDRAAVIT---ENDRNG------- 342
Query: 342 DMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHI 401
N W LC+VTQVEE KC+++LLPIWLCTI+YSV+FTQMASLFVEQG M + FHI
Sbjct: 343 TRSNAWRLCSVTQVEEAKCVMKLLPIWLCTIIYSVIFTQMASLFVEQGDVMNAYVGKFHI 402
Query: 402 PPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISA 461
P ASMS FDI SV IYR ++ P V TEL RMG+GL+I IMAM++A
Sbjct: 403 PAASMSVFDIFSVFVSTGIYRHIIFPYVRP----------TELMRMGIGLIIGIMAMVAA 452
Query: 462 GVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGL 521
G+ EI RLK + K S L+I WQIPQYVL+GASEVFMYVGQLEFFNGQAPDGL
Sbjct: 453 GLTEIQRLKRVVPG-----QKESELTILWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGL 507
Query: 522 KSFGSALCMTSISLGNYVSSLLVTIVMKISTR----PGWIPGNLNKGHLDRFYFLLAALT 577
K+ GS+LCM S++LGNYVSSL+V IVM I+ R PGWIP NLN+GH+DRFYFL+AAL
Sbjct: 508 KNLGSSLCMASMALGNYVSSLMVNIVMAITKRGENSPGWIPENLNEGHMDRFYFLIAALA 567
Query: 578 TADLFIYIICARWYKYIKFEERTV 601
D +Y+I A+WY+ I +E ++
Sbjct: 568 AIDFVVYLIFAKWYQPISHDEDSI 591
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 265/581 (45%), Positives = 386/581 (66%), Gaps = 22/581 (3%)
Query: 19 DQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVG 78
++++ T DG VD H PA K +TG W A IL N+ LA++G+G NLV +L +
Sbjct: 2 EEKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLN 61
Query: 79 QNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFL 138
Q NA AANNV+ W+GT YI L+GAF++D+Y GRY T A F I+V G+ L++S+
Sbjct: 62 QGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPG 121
Query: 139 LKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHS 198
LKP C + C +SS A+F++++Y+ ALG GG +P +++FGADQFDE D E
Sbjct: 122 LKPGNC--NADTCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIK 178
Query: 199 KIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHF 258
K +FF++FY ++N+G+L + T+L + + W GF + +A+ F G+ YR
Sbjct: 179 KSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQ 238
Query: 259 KPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFL 318
+P G+PL+RI QV+VAA RK V++ +D LLF D +++ G+R ++HT KF
Sbjct: 239 RPGGSPLTRIFQVIVAAFRKISVKVP-EDKSLLFETAD--DESNIKGSRKLVHTDNLKFF 295
Query: 319 DKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVF 378
DKAAV +SD+ K DGE NPW LC+VTQVEE+K I+ LLP+W I+++ V+
Sbjct: 296 DKAAV-ESQSDSIK----DGE----VNPWRLCSVTQVEELKSIITLLPVWATGIVFATVY 346
Query: 379 TQMASLFVEQGAAMKTNI-STFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSG 437
+QM+++FV QG M ++ F IP AS+S FD +SV + +Y + + PL + TR
Sbjct: 347 SQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNE- 405
Query: 438 TRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVL 497
RGFT+LQRMG+GLV++I AMI+AGV+E+ RL Y +K N+ + K +SIFWQIPQY+L
Sbjct: 406 -RGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDY-VKTHNAYDQKQIHMSIFWQIPQYLL 463
Query: 498 IGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKIST---RP 554
IG +EVF ++GQLEFF QAPD ++S SAL +T+++LGNY+S++LVT+VMKI+ +P
Sbjct: 464 IGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKP 523
Query: 555 GWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIK 595
GWIP NLN+GHLD F++LLA L+ + +Y+ ++ YKY K
Sbjct: 524 GWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKK 564
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 248/573 (43%), Positives = 369/573 (64%), Gaps = 21/573 (3%)
Query: 27 DGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAAN 86
DG+VD +G P +K +TG W A IL N+ LA++G+ NL+ +LT + Q N AA
Sbjct: 27 DGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAAT 86
Query: 87 NVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGD 146
NV+ W GT Y+ L+GA L+D+YWGRY T A F I+ IG+ +L++S+ LKP+ C
Sbjct: 87 NVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAEC-- 144
Query: 147 EGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYF 206
G+ C S + A+F+ +YL ALG GG +P +++FGADQFD+ D +E K +FF++F
Sbjct: 145 IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWF 204
Query: 207 YLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLS 266
Y ++N+G+L S+++L + ++ W LGF +A+ F GTP YR KP G+P++
Sbjct: 205 YFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPIT 264
Query: 267 RICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITR 326
RI QVVVA+ RK V++ +D LL+ +D K ++ G+R I HT ++LDKAAVI
Sbjct: 265 RISQVVVASFRKSSVKVP-EDATLLYETQD--KNSAIAGSRKIEHTDDCQYLDKAAVI-- 319
Query: 327 KSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFV 386
S+ + +G D N W LCTVTQVEE+K ++R+ PIW I++S V+ QM+++FV
Sbjct: 320 -SEEESKSG------DYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFV 372
Query: 387 EQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQR 446
+QG AM I +F +PPA++ +FD SV ++ +Y R + PL + T +GFTE+QR
Sbjct: 373 QQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVD--KGFTEIQR 430
Query: 447 MGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKAST-LSIFWQIPQYVLIGASEVFM 505
MG+GL ++++ M +A +VEI RL + D ES A +S+ WQIPQY ++GA+EVF
Sbjct: 431 MGIGLFVSVLCMAAAAIVEIIRLHMA-NDLGLVESGAPVPISVLWQIPQYFILGAAEVFY 489
Query: 506 YVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTR---PGWIPGNLN 562
++GQLEFF Q+PD ++S SAL + + +LGNY+SSL++T+V +TR GWI NLN
Sbjct: 490 FIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLN 549
Query: 563 KGHLDRFYFLLAALTTADLFIYIICARWYKYIK 595
GHLD F++LLA L+ ++ +Y A YK K
Sbjct: 550 SGHLDYFFWLLAGLSLVNMAVYFFSAARYKQKK 582
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 464 bits (1193), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/595 (41%), Positives = 378/595 (63%), Gaps = 29/595 (4%)
Query: 5 NVCNEVIVKEKIKNDQE--EACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAF 62
+V ++ +E++ N + DG++D +G P K++TG W A IL N+ LA+
Sbjct: 14 DVEESLLTQEEVNNHLTGLSSTAEDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAY 73
Query: 63 FGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAI 122
+G+ NL+ + T + ++N AA++V W GT YI L+GA ++DSYWGRY T A F AI
Sbjct: 74 YGIAKNLITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAI 133
Query: 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNP-CGSHSSLHMALFYLSIYLTALGNGGYQPNIA 181
+ IG+ L++S+ +LKP+ C C +++ A+F+ +YL ALG GG +P ++
Sbjct: 134 YFIGMALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVS 193
Query: 182 TFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSA 241
+FGADQFD+ DP+E K +FF++FY ++N+GS S+T+L + ++ W LGF
Sbjct: 194 SFGADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFM 253
Query: 242 TMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQT 301
+++ F IGTP YR KP G+P++R+CQV+VAA RK K+ + +D L+ R+ K +
Sbjct: 254 GVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLP-EDISFLYETRE--KNS 310
Query: 302 SQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCI 361
G+R I HT G+KFLDKAAVI S+ + +G NPW LCTVTQVEEVK +
Sbjct: 311 MIAGSRKIQHTDGYKFLDKAAVI---SEYESKSGA------FSNPWKLCTVTQVEEVKTL 361
Query: 362 LRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIY 421
+R+ PIW I+YSV+++Q+++LFV+QG +M I +F IPPAS FD L V I IY
Sbjct: 362 IRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIY 421
Query: 422 RRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCES 481
R L P V R T +G T+LQRMG+GL ++++++ +A +VE RL+ +
Sbjct: 422 DRFLVPFVRRFT--GIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLA--------Q 471
Query: 482 KASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSS 541
+SIFWQIPQY+L+G +EVF ++G++EFF ++PD ++S SAL + + ++G+Y+SS
Sbjct: 472 DFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSS 531
Query: 542 LLVTIVMKIST---RPGWIPGNLNKGHLDRFYFLLAALTTADLFIY-IICARWYK 592
L++T+V + + GW+P +LNKGHLD F++LL +L ++ +Y +IC + K
Sbjct: 532 LILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVSLGLVNIPVYALICVKHTK 586
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1186), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/582 (40%), Positives = 372/582 (63%), Gaps = 23/582 (3%)
Query: 18 NDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVV 77
D ++ T DG +D H +PA K +TGTW A IL + LA++G+ NL+ +L + +
Sbjct: 2 EDDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQM 61
Query: 78 GQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAF 137
N A+ +VS W+GT Y L+GAF++D+Y GRY T A F I++ G+ L++S+
Sbjct: 62 NMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVP 121
Query: 138 LLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGH 197
L P+ G+ + + A+ ++++YL ALG GG +P +++FGADQFD+ D KE
Sbjct: 122 GLTPTCSGETCHATAGQT----AITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKE 177
Query: 198 SKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRH 257
SK +FF++FY +N+G++ ++++L + + W G + +A++ F G+ YR
Sbjct: 178 SKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRL 237
Query: 258 FKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKF 317
KP G+PL+R+ QV+VA+ RK KV+I +D+ LL+ +D ++S G+R + HT+ F
Sbjct: 238 QKPGGSPLTRMLQVIVASCRKSKVKIPEDE-SLLYENQDA--ESSIIGSRKLEHTKILTF 294
Query: 318 LDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVV 377
DKAAV + + +N G ++ + W LCTVTQVEE+K ++RLLPIW I+++ V
Sbjct: 295 FDKAAV-----ETESDNKGAAKS----SSWKLCTVTQVEELKALIRLLPIWATGIVFASV 345
Query: 378 FTQMASLFVEQGAAMKTNI-STFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKS 436
++QM ++FV QG + ++ F IP AS+S FD LSV + +Y +++ P + T
Sbjct: 346 YSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHE 405
Query: 437 GTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYV 496
RGFT+LQR+G+GLVI+I +M+SAG++E+ RL Y ++ N + ++IFWQ+PQY
Sbjct: 406 --RGFTQLQRIGIGLVISIFSMVSAGILEVARLNY-VQTHNLYNEETIPMTIFWQVPQYF 462
Query: 497 LIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKIST---R 553
L+G +EVF ++GQLEFF QAPD ++S SAL +T+I+ GNY+S+ LVT+V K++ R
Sbjct: 463 LVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGR 522
Query: 554 PGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIK 595
PGWI NLN GHLD F++LLA L+ + +Y+ A+WY Y K
Sbjct: 523 PGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKK 564
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/590 (38%), Positives = 350/590 (59%), Gaps = 61/590 (10%)
Query: 8 NEVIVKEKIKNDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVGV 67
E +++E++K E DG++D HG P +K+ TG W A I N+ LA++G+
Sbjct: 14 EESLIQEEVKLYAE-----DGSIDIHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAK 68
Query: 68 NLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGL 127
NL+ + T + + N AA +V W GT YI L+GA ++D+YWGRY T A F AI+ G+
Sbjct: 69 NLITYFTNELHETNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGM 128
Query: 128 VSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQ 187
V+L++S+ LKP+ C G+ C + + + + +YL ALG GG +P +++FGADQ
Sbjct: 129 VALTLSASVPGLKPAEC--IGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQ 186
Query: 188 FDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALIL 247
FD+ DP E K +FF++FY +N+G+ S+T+L + ++ W LGF +A +
Sbjct: 187 FDKTDPSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMS 246
Query: 248 FLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGAR 307
F GTP YR KP G+P++ +CQV+VAA RK +++ +D D
Sbjct: 247 FFFGTPLYRFQKPRGSPITSVCQVLVAAYRKSNLKVPEDSTD------------------ 288
Query: 308 NILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPI 367
+ D N NPW LCTVTQVEEVK +LRL+PI
Sbjct: 289 ---------------------EGDANT----------NPWKLCTVTQVEEVKILLRLVPI 317
Query: 368 WLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDP 427
W I++SV+ +Q+ +LFV+QG MK I F IPPA++ FD SV + IY RV+ P
Sbjct: 318 WASGIIFSVLHSQIYTLFVQQGRCMKRTIGLFEIPPATLGMFDTASVLISVPIYDRVIVP 377
Query: 428 LVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCES-KASTL 486
LV R T + +GFTELQRMG+GL ++++++ A +VE RL+ + +D + ES L
Sbjct: 378 LVRRFTGLA--KGFTELQRMGIGLFVSVLSLTFAAIVETVRLQLA-RDLDLVESGDIVPL 434
Query: 487 SIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTI 546
+IFWQIPQY L+G + VF +VG++EFF Q+PD ++S SA + + +LGNY+SSL++T+
Sbjct: 435 NIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMRSLCSAWALLTTTLGNYLSSLIITL 494
Query: 547 VMKISTRPGWIPG-NLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIK 595
V +S + WIP N+N GHLD F++LL +L + ++ +++ + Y ++K
Sbjct: 495 VAYLSGKDCWIPSDNINNGHLDYFFWLLVSLGSVNIPVFVFFSVKYTHMK 544
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/568 (36%), Positives = 333/568 (58%), Gaps = 37/568 (6%)
Query: 39 KRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIF 98
KR G W A + I+V + AF+G+ NL+ FLT +GQ+ A AA N++ W G +F
Sbjct: 10 KRTKGGWNAALFIIVVEIAERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVSCMF 69
Query: 99 SLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLH 158
+LGAFL+DS GR+KT + I+++G+V L +S + +
Sbjct: 70 PILGAFLADSILGRFKTVLLTSFIYLLGIVMLPLSVTVVARR----------------MR 113
Query: 159 MALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSN 218
+F++++Y+ A+G GG++P + TF ADQF E + +E +K +FF+Y+Y+A+ L S +
Sbjct: 114 EKVFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASSIAV 173
Query: 219 TILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRK 278
L + ++ W+LGF AGS +A+++FLIG P+YR P G+P +R+ QV+VAA +K
Sbjct: 174 LALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVAALKK 233
Query: 279 WKVQISDDDHDLLFYERD--GIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGG 336
W++ + + L + E D ++ T+ N + T F+FLDKA +I + D++KN
Sbjct: 234 WRLSSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIID-EIDHNKN--- 289
Query: 337 DGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNI 396
RNPW LCTV QVEEVK ILRL+PIW+ I++ TQ+ + F++QG+ M I
Sbjct: 290 -------RNPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTI 342
Query: 397 -STFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAI 455
+ F IPPA+ S +++ I +Y RV P+V ++T G T LQR+GVGL +A
Sbjct: 343 GNHFTIPPAAFQSIVGVTILILIPLYDRVFVPMVRKITNHHS--GITSLQRIGVGLFVAT 400
Query: 456 MAMISAGVVEIFRLKYSIKDCNSCESKAST--LSIFWQIPQYVLIGASEVFMYVGQLEFF 513
M+ G+VE RLK + +D +S +S W +PQY+L+G +VF VG E F
Sbjct: 401 FNMVICGLVEAKRLKVA-RDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELF 459
Query: 514 NGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPG--WIPGNLNKGHLDRFYF 571
Q P+ ++S G+A+ ++ + +G++VS+ +++ V IS G W+ NLN+ HLD +Y+
Sbjct: 460 YDQMPETMRSIGAAIFISVVGVGSFVSTGIISTVQTISKSHGEEWLVNNLNRAHLDYYYW 519
Query: 572 LLAALTTADLFIYIICARWYKYIKFEER 599
++A+L L Y+ A + Y K +++
Sbjct: 520 IIASLNAVSLCFYLFIANHFLYKKLQDK 547
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 226/600 (37%), Positives = 352/600 (58%), Gaps = 30/600 (5%)
Query: 19 DQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVG 78
+ + + T+ AVD GRPA K +TG WI LIL + + L+ G+ VNLV +L +
Sbjct: 2 ESKGSWTVADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMH 61
Query: 79 QNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFL 138
++ +AN V+ + GT ++ LLG FL+DS+ GR+KT IF I +G +L+V++
Sbjct: 62 LPSSTSANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPE 121
Query: 139 LKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHS 198
L+P C G C ++ M + Y+S+YL ALG GG + +I+ FG+DQFD++DPKE
Sbjct: 122 LRPPTC-HHGEACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAH 180
Query: 199 KIAFFSYFYLALNLGSLFSNTILGYFEDE--GMWALGFWASAGSATMALILFLIGTPRYR 256
FF+ F+ +++G+L + T+L Y +DE WA G S +A+++FL GT RYR
Sbjct: 181 MAFFFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGI--CTVSMAIAIVIFLCGTKRYR 238
Query: 257 HFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFK 316
+ K G+P+ +I QV+ AA RK K+++ L +GI+ I HT F
Sbjct: 239 YKKSQGSPVVQIFQVIAAAFRKRKMELPQSIVYLYEDNPEGIR---------IEHTDQFH 289
Query: 317 FLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSV 376
LDKAA++ ++ D DG + + NPW L +VT+VEEVK ++RLLPIW TI++
Sbjct: 290 LLDKAAIV---AEGDFEQTLDG--VAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWT 344
Query: 377 VFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKS 436
+ QM + VEQ + M+ NI +F IP S++ F + ++ + +Y R + P ++
Sbjct: 345 TYAQMITFSVEQASTMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKW---K 401
Query: 437 GTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYV 496
G GF+ LQR+ +GLV++ M +A +VE RL + S K +S+F +PQ+
Sbjct: 402 GKPGFSSLQRIAIGLVLSTAGMAAAALVEQKRLSVA----KSSSQKTLPISVFLLVPQFF 457
Query: 497 LIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKI---STR 553
L+GA E F+Y GQL+FF Q+P G+K+ + L +T++SLG +VSS LV+IV ++ ST
Sbjct: 458 LVGAGEAFIYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTD 517
Query: 554 PGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFEERTVGDNAHDI-IDQC 612
GW+ N+N G LD FY+LL L+ + +YIICA W+K K ++ +N ++ C
Sbjct: 518 VGWLADNINHGRLDYFYWLLVILSGINFVVYIICALWFKPTKGKDSVEKENGKGFSVEDC 577
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 613 | ||||||
| 224129404 | 606 | predicted protein [Populus trichocarpa] | 0.964 | 0.975 | 0.789 | 0.0 | |
| 255571141 | 601 | Peptide transporter, putative [Ricinus c | 0.967 | 0.986 | 0.768 | 0.0 | |
| 224138864 | 591 | predicted protein [Populus trichocarpa] | 0.939 | 0.974 | 0.758 | 0.0 | |
| 449432321 | 597 | PREDICTED: nitrate transporter 1.5-like | 0.933 | 0.958 | 0.786 | 0.0 | |
| 255557635 | 598 | Peptide transporter, putative [Ricinus c | 0.957 | 0.981 | 0.751 | 0.0 | |
| 224126323 | 598 | predicted protein [Populus trichocarpa] | 0.959 | 0.983 | 0.736 | 0.0 | |
| 359489331 | 601 | PREDICTED: nitrate transporter 1.5-like | 0.946 | 0.965 | 0.771 | 0.0 | |
| 449461529 | 602 | PREDICTED: nitrate transporter 1.5-like | 0.949 | 0.966 | 0.742 | 0.0 | |
| 449511529 | 601 | PREDICTED: nitrate transporter 1.5-like | 0.952 | 0.971 | 0.750 | 0.0 | |
| 356565426 | 597 | PREDICTED: nitrate transporter 1.5-like | 0.946 | 0.971 | 0.738 | 0.0 |
| >gi|224129404|ref|XP_002320578.1| predicted protein [Populus trichocarpa] gi|222861351|gb|EEE98893.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 943 bits (2438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/608 (78%), Positives = 520/608 (85%), Gaps = 17/608 (2%)
Query: 1 MALSNVCNEV-IVKEKIKNDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLAT 59
MA N+C E V+ K+ ++E CT DG+VDRHG PAI+ RTGTW AGILILVNQGLAT
Sbjct: 1 MACLNICKEEGSVQGKLVKKEQEVCTRDGSVDRHGDPAIRGRTGTWFAGILILVNQGLAT 60
Query: 60 LAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIF 119
LAFFGVGVNLVLFLTRV+GQ+NA+AANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIF
Sbjct: 61 LAFFGVGVNLVLFLTRVLGQDNAEAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIF 120
Query: 120 QAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPN 179
QAIFV GLV LS+SSY FLLKP GCGDE +PCGSHS+ FY SIYL ALGNGGYQPN
Sbjct: 121 QAIFVTGLVLLSLSSYLFLLKPRGCGDEHSPCGSHSTYQNVFFYFSIYLVALGNGGYQPN 180
Query: 180 IATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAG 239
IATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFED GMWALGFWASAG
Sbjct: 181 IATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDRGMWALGFWASAG 240
Query: 240 SATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIK 299
SA +AL+LFLIGTPRYRHF P GNPLSR CQV+VAATRKWKVQ + D F E D K
Sbjct: 241 SALLALVLFLIGTPRYRHFTPKGNPLSRCCQVMVAATRKWKVQRMPNQGDDQF-ESDVPK 299
Query: 300 QTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVK 359
S+NG R ILHTQGF+FLD+AA+IT K D +N + +PW +CTV QVEE K
Sbjct: 300 DGSKNGDRKILHTQGFRFLDRAAIITSK-DYTENR--------IHDPWRVCTVNQVEEFK 350
Query: 360 CILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIF 419
CILRLLPIWLCTILYSVVFTQMASLFVEQGA MKT IS FHIPPASMSSFDILSVAAFIF
Sbjct: 351 CILRLLPIWLCTILYSVVFTQMASLFVEQGADMKTTISKFHIPPASMSSFDILSVAAFIF 410
Query: 420 IYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSC 479
IYRRVLDPLV R+ + +G TELQRMG+GLVIAI+AM+SAG+VE+FRLKY+ KDC C
Sbjct: 411 IYRRVLDPLVARI--RKDPKGLTELQRMGIGLVIAIIAMVSAGIVELFRLKYARKDCPRC 468
Query: 480 ESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYV 539
ES AS+LSI WQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYV
Sbjct: 469 ES-ASSLSILWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYV 527
Query: 540 SSLLVTIVMKISTR---PGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKF 596
SSLLVT+VMKISTR PGWIPGNLNKGHLDRF+FLLA LTTADL +YIICARWYKYIKF
Sbjct: 528 SSLLVTVVMKISTRDEMPGWIPGNLNKGHLDRFFFLLAVLTTADLVLYIICARWYKYIKF 587
Query: 597 EERTVGDN 604
E + D+
Sbjct: 588 ERQQEADS 595
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571141|ref|XP_002526521.1| Peptide transporter, putative [Ricinus communis] gi|223534196|gb|EEF35912.1| Peptide transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/621 (76%), Positives = 518/621 (83%), Gaps = 28/621 (4%)
Query: 1 MALSNVCNEV-IVKEKIKNDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLAT 59
MA N+C E+ V KI T DG VDRHG PAI++RTGTWIAGILILVNQGLAT
Sbjct: 1 MACLNLCTELGEVDGKIIKKDIGVYTQDGTVDRHGHPAIRQRTGTWIAGILILVNQGLAT 60
Query: 60 LAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIF 119
LAFFGVGVNLVLFLTRV+GQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIF
Sbjct: 61 LAFFGVGVNLVLFLTRVLGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIF 120
Query: 120 QAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPN 179
QAIFV+GLVSLS+SSY FLLKP GCG E PCGSHS+ +ALFYLS+YL ALGNGGYQPN
Sbjct: 121 QAIFVVGLVSLSLSSYIFLLKPHGCGSEKLPCGSHSNFEIALFYLSVYLVALGNGGYQPN 180
Query: 180 IATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAG 239
IAT GADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFED+GMWALGFW SAG
Sbjct: 181 IATLGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDQGMWALGFWTSAG 240
Query: 240 SATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIK 299
SA +AL+LFL GTPRYRHFK GNPLSR CQV+VAA R WK D + + LF
Sbjct: 241 SALLALLLFLCGTPRYRHFKSKGNPLSRFCQVLVAAFRNWKHNKRDLNEEDLFES----N 296
Query: 300 QTSQNG-ARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEV 358
SQ+G R ILHT GF+FLD+AA+IT + D N D+RNPW LCTVTQVEEV
Sbjct: 297 FCSQDGDHRKILHTDGFRFLDRAALITSE---------DNVNADIRNPWRLCTVTQVEEV 347
Query: 359 KCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFI 418
KCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKT IS+FHIPPASMSSFDI+SVA FI
Sbjct: 348 KCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTISSFHIPPASMSSFDIVSVAVFI 407
Query: 419 FIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKD--- 475
F+YRR+LDPLV R+ + RG TELQRMG+GLVIAI+AM+SAGVVE+FRLKY
Sbjct: 408 FMYRRILDPLVARIRKDP--RGLTELQRMGIGLVIAILAMVSAGVVELFRLKYKNTQKAV 465
Query: 476 CNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISL 535
C CES+ S+LSIFWQIPQYVLIGASEVFMYVGQLEFFN Q PDGLKSFGSALCMTSISL
Sbjct: 466 CADCESE-SSLSIFWQIPQYVLIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISL 524
Query: 536 GNYVSSLLVTIVMKISTR---PGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYK 592
GNYVSSLLVT+VMKISTR PGWIPGNLNKGHLDRFYFLLAALTTADL IYI+ A+WYK
Sbjct: 525 GNYVSSLLVTVVMKISTRDEMPGWIPGNLNKGHLDRFYFLLAALTTADLIIYILTAKWYK 584
Query: 593 YIKFEERTVGDNAHDIIDQCV 613
YIKF+ G + +II+Q V
Sbjct: 585 YIKFQ----GKISANIINQQV 601
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224138864|ref|XP_002326709.1| predicted protein [Populus trichocarpa] gi|222834031|gb|EEE72508.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/591 (75%), Positives = 506/591 (85%), Gaps = 15/591 (2%)
Query: 12 VKEKIKNDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVGVNLVL 71
++ K K +EE CT DG VD HGRPAIK ++G W+AGI+IL+NQGLATLAFFGVGVNLVL
Sbjct: 1 MQGKFKEGREE-CTFDGTVDWHGRPAIKDKSGQWVAGIIILLNQGLATLAFFGVGVNLVL 59
Query: 72 FLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLS 131
FLTRV+ Q+NADAANNVSKWTGTVYIFSL+GAFLSDSYWGRYKTCAIFQ IFVIGLV LS
Sbjct: 60 FLTRVLQQSNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIGLVILS 119
Query: 132 VSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEE 191
+SSY FL++P GCG+E PCGSHSS+ ++LFYLSIYL ALGNGGYQPNIATFGADQFDEE
Sbjct: 120 LSSYLFLIRPKGCGNELTPCGSHSSMEVSLFYLSIYLVALGNGGYQPNIATFGADQFDEE 179
Query: 192 DPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIG 251
DP+EGHSK+AFFSYFYLALNLGSLFSNTILGYFEDEG+WALGFWASAGSA AL+LFL G
Sbjct: 180 DPREGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGVWALGFWASAGSAFAALVLFLGG 239
Query: 252 TPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILH 311
T RYRHFKP+GNPLSR CQV++AA +KWK+++ D + L+ K S NG R ILH
Sbjct: 240 TSRYRHFKPSGNPLSRFCQVIIAAMKKWKLEMPRDGEEELYNVH--AKDCSMNGNRKILH 297
Query: 312 TQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCT 371
T GFKFLD+AA I+ + +D+ G RNPW LC +TQVEEVKCILRLLPIWLCT
Sbjct: 298 TDGFKFLDRAAFISSRDIDDQKRG-------CRNPWRLCPITQVEEVKCILRLLPIWLCT 350
Query: 372 ILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVER 431
I+YSVVFTQMASLFVEQGAAMKT +S F IPPASMSSFDILSVA FIF+YRRVLDPLV R
Sbjct: 351 IIYSVVFTQMASLFVEQGAAMKTTVSNFKIPPASMSSFDILSVAFFIFLYRRVLDPLVSR 410
Query: 432 LTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQ 491
+ +K+G++G TELQRMGVGLVIAI+AMISAG+VE +RL+Y+ KDC CE +S++SIFWQ
Sbjct: 411 V-KKTGSKGLTELQRMGVGLVIAIVAMISAGLVECYRLRYARKDCTHCEG-SSSMSIFWQ 468
Query: 492 IPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKIS 551
+PQY LIGASEVFMYVGQLEFFN Q PDGLKSFGSALCMTSISLGNYVSSLLVT+VMKIS
Sbjct: 469 VPQYALIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVTMVMKIS 528
Query: 552 TR---PGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFEER 599
T PGWIPGNLNKGHLDRFYFLLA LTT DL +YI CARWYK I+ E +
Sbjct: 529 TEDHMPGWIPGNLNKGHLDRFYFLLATLTTIDLVVYIACARWYKSIQLEGK 579
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432321|ref|XP_004133948.1| PREDICTED: nitrate transporter 1.5-like [Cucumis sativus] gi|449515422|ref|XP_004164748.1| PREDICTED: nitrate transporter 1.5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/590 (78%), Positives = 510/590 (86%), Gaps = 18/590 (3%)
Query: 13 KEKIKNDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVGVNLVLF 72
K+K+ ++E TLDGAVDRHG PAI+ +TGTW++GILILVNQGLATLAFFGVGVNLVLF
Sbjct: 15 KKKVMTSEKEVRTLDGAVDRHGHPAIRDKTGTWVSGILILVNQGLATLAFFGVGVNLVLF 74
Query: 73 LTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSV 132
LTRVVGQ+NA+AANNVSKWTGTVYIFSLLGAFLSDSYWGR+KTCAIFQAIFV+GL SLS+
Sbjct: 75 LTRVVGQDNAEAANNVSKWTGTVYIFSLLGAFLSDSYWGRFKTCAIFQAIFVVGLASLSI 134
Query: 133 SSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEED 192
+SY FL++P GCGDE PC SHSSLH+ALFYLS+YL ALGNGGYQPNIATFGADQFDEED
Sbjct: 135 TSYIFLVRPKGCGDEHTPCNSHSSLHIALFYLSVYLVALGNGGYQPNIATFGADQFDEED 194
Query: 193 PKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGT 252
PKEG SKIAFFSYFYLALNLGSLFSNTILGYFEDEGMW LGFWAS SA +AL+LFL G
Sbjct: 195 PKEGQSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWVLGFWASTASAALALLLFLCGI 254
Query: 253 PRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHT 312
PRYRHF P GNPLSR+ QVV+AATRKWKVQ+ + L D K+ + NGAR ILHT
Sbjct: 255 PRYRHFTPKGNPLSRVSQVVIAATRKWKVQMIPNSEGLF---DDDDKELASNGARRILHT 311
Query: 313 QGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTI 372
GFKFLDKAAVIT + ++G RNPW LCTVTQVEEVKCILRLLPIWLCTI
Sbjct: 312 NGFKFLDKAAVITSSEYDQLDDGA-------RNPWRLCTVTQVEEVKCILRLLPIWLCTI 364
Query: 373 LYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERL 432
LYSVVFTQMASLFV QGAAM+TNISTFH+PPASMSSFDILSVAAFIFIYRRV+DP+ RL
Sbjct: 365 LYSVVFTQMASLFVVQGAAMRTNISTFHVPPASMSSFDILSVAAFIFIYRRVIDPVFARL 424
Query: 433 TRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQI 492
T+ S TELQRMG+GLVIAI AM+SAG VEIFRLK++ KDC C++ +S+LSIFWQI
Sbjct: 425 TKSS----LTELQRMGIGLVIAICAMVSAGTVEIFRLKHANKDCLRCDN-SSSLSIFWQI 479
Query: 493 PQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKIST 552
PQYVLIGASEVFMYVGQLEFFN QAPDGLKSFGSALCMTSIS GNYVSSLLVTIVMKIS
Sbjct: 480 PQYVLIGASEVFMYVGQLEFFNSQAPDGLKSFGSALCMTSISFGNYVSSLLVTIVMKISA 539
Query: 553 R---PGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFEER 599
PGWIPGNLN+GHLDRFYFLLAALT ADL +YI+CA+WYKYIKFE R
Sbjct: 540 TDNMPGWIPGNLNRGHLDRFYFLLAALTAADLVVYILCAKWYKYIKFESR 589
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557635|ref|XP_002519847.1| Peptide transporter, putative [Ricinus communis] gi|223540893|gb|EEF42451.1| Peptide transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/608 (75%), Positives = 514/608 (84%), Gaps = 21/608 (3%)
Query: 7 CNEVIVKEKIKNDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVG 66
C E+ ++K+K DQ+E CTLDG VD HG+PA+++++G W+AGI+IL+NQGLATLAFFGVG
Sbjct: 3 CLEMYKEDKLKPDQDE-CTLDGTVDWHGQPAMRKKSGKWVAGIIILLNQGLATLAFFGVG 61
Query: 67 VNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIG 126
VNLVLFLTRV+ QNNADAANNVSKWTGTVYIFSL+GAFLSDSYWGRYKTCAIFQ IFVIG
Sbjct: 62 VNLVLFLTRVLQQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIG 121
Query: 127 LVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGAD 186
LV LS+SSY FL++P GCGDE PCGSHSS+ + FYLSIYL ALGNGGYQPNIATFGAD
Sbjct: 122 LVFLSLSSYLFLIRPKGCGDELTPCGSHSSMEVGFFYLSIYLVALGNGGYQPNIATFGAD 181
Query: 187 QFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALI 246
QFDEEDPKEGHSK+AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSA AL
Sbjct: 182 QFDEEDPKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSALAALA 241
Query: 247 LFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGA 306
LFL GT RYRHFKPTGNPLSR CQV++AAT+KW V + D DL Y+ +G + S NG
Sbjct: 242 LFLGGTARYRHFKPTGNPLSRFCQVIIAATKKWSVNMPSDAEDL--YDVNG-EDCSANGN 298
Query: 307 RNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLP 366
R IL+T GFKFLD+AA I+ + +++ G +NPW LC +TQVEEVKCILRLLP
Sbjct: 299 RRILYTHGFKFLDRAAFISSRDMDEQKQGS-------QNPWRLCPITQVEEVKCILRLLP 351
Query: 367 IWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLD 426
IWLCTILYSVVFTQMASLFVEQGAAMKT +S F IPPASMSSFDILSVA FIF+YRRVLD
Sbjct: 352 IWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVALFIFLYRRVLD 411
Query: 427 PLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTL 486
PL+ R+ R S ++G TELQRMG+GLVIAIMAM+SAG+VE +RLKY+ KDC CE +S+L
Sbjct: 412 PLISRI-RNSKSKGLTELQRMGIGLVIAIMAMVSAGIVECYRLKYANKDCTRCEG-SSSL 469
Query: 487 SIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTI 546
SIFWQ+PQY LIGASEVFMYVGQLEFFN Q PDGLKSFGSALCMTSISLGNYVSSLLVT+
Sbjct: 470 SIFWQVPQYALIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVTM 529
Query: 547 VMKISTR---PGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFEER---- 599
VMKIST PGWIPGNLNKGHLDRFYFLLA LTT DL +Y+ CARWYK IK E +
Sbjct: 530 VMKISTEDHMPGWIPGNLNKGHLDRFYFLLAGLTTIDLVVYMACARWYKCIKLEGKFDRN 589
Query: 600 -TVGDNAH 606
V DN+
Sbjct: 590 NNVEDNSE 597
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224126323|ref|XP_002329526.1| predicted protein [Populus trichocarpa] gi|222870235|gb|EEF07366.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/604 (73%), Positives = 506/604 (83%), Gaps = 16/604 (2%)
Query: 7 CNEVIVKEKIKNDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVG 66
C EV ++K K + E CT DG VD HGRPAIK ++G W AGI+IL+NQGLATLAFFGVG
Sbjct: 3 CLEVCKEDKFKEGEGE-CTFDGTVDWHGRPAIKAKSGQWAAGIIILLNQGLATLAFFGVG 61
Query: 67 VNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIG 126
VNLVLFLTRV+ Q+NADAANNVSKWTGTVYIFSL+GAFLSDSYWGRYKTCA+FQ IFVIG
Sbjct: 62 VNLVLFLTRVLQQSNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAVFQVIFVIG 121
Query: 127 LVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGAD 186
LV LS++S+ FL++P GCGDE PCGSHSS+ ++LFYLSIYL ALGNGGYQPNIATFGAD
Sbjct: 122 LVILSLASHLFLIRPKGCGDELTPCGSHSSMEVSLFYLSIYLIALGNGGYQPNIATFGAD 181
Query: 187 QFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALI 246
QFDE+DP+EG+SK+AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFW SAGSA AL+
Sbjct: 182 QFDEDDPREGYSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWMSAGSAFAALV 241
Query: 247 LFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGA 306
LFL GT RYRHFKP+GNPLSR QV++AA +K +V++ D + L Y+ D K S NG
Sbjct: 242 LFLGGTARYRHFKPSGNPLSRFGQVIIAAMKKCRVEMPPDGEEEL-YDVDR-KDCSMNGN 299
Query: 307 RNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLP 366
R ILHT GFKFLD+AA I+ + +D+ G RNPW LC +TQVEEVKCILRLLP
Sbjct: 300 RKILHTDGFKFLDRAAFISSRDIDDQKRG-------CRNPWRLCPITQVEEVKCILRLLP 352
Query: 367 IWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLD 426
IWLCTI+YSVVFTQMASLFVEQGAAMKT IS F IPPASMS+FDILSVA FIF+YRRVLD
Sbjct: 353 IWLCTIIYSVVFTQMASLFVEQGAAMKTTISNFKIPPASMSTFDILSVAFFIFLYRRVLD 412
Query: 427 PLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTL 486
PLV +++ ++G TELQRMGVGLVIAIMAM+SAG+VE +RLKY+ KDC CE +S+L
Sbjct: 413 PLVSSF-KQTSSKGLTELQRMGVGLVIAIMAMVSAGLVECYRLKYARKDCKHCEG-SSSL 470
Query: 487 SIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTI 546
SIFWQ PQY LIGASEVFMYVGQLEFFN Q PDGLKSFGSALCMTSISLGNYVSSLLVT+
Sbjct: 471 SIFWQAPQYALIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVTM 530
Query: 547 VMKISTR---PGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFEERTVGD 603
V+KIST PGWIPGNLN GHLDRFYFLLA LTT DL +Y+ CARWYK IK E++ +
Sbjct: 531 VVKISTEDHMPGWIPGNLNTGHLDRFYFLLAGLTTIDLVVYMACARWYKSIKLEKK-CEE 589
Query: 604 NAHD 607
N H+
Sbjct: 590 NDHE 593
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489331|ref|XP_002265725.2| PREDICTED: nitrate transporter 1.5-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/596 (77%), Positives = 509/596 (85%), Gaps = 16/596 (2%)
Query: 13 KEKIKNDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVGVNLVLF 72
+ K +N+QEE CT DG+VDRHG PA++ RTG W+ ILILVNQGLATLAFFGVGVNLVLF
Sbjct: 11 RGKTRNEQEE-CTFDGSVDRHGHPAVRARTGNWVTAILILVNQGLATLAFFGVGVNLVLF 69
Query: 73 LTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSV 132
LTRV+GQ+NA AANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQ IFVIGLV LS+
Sbjct: 70 LTRVLGQDNATAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQVIFVIGLVLLSL 129
Query: 133 SSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEED 192
SSY FLLKP+GCGD+ PCGSHS+ ++ FYLSIYL ALGNGGYQPNIATFGADQFDE++
Sbjct: 130 SSYIFLLKPNGCGDKEFPCGSHSTFEISFFYLSIYLIALGNGGYQPNIATFGADQFDEDN 189
Query: 193 PKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGT 252
PKE HSK+AFFSYFYLALNLGSLFSNTILGYFED G W LGFWAS+ SA +ALILFL G
Sbjct: 190 PKESHSKVAFFSYFYLALNLGSLFSNTILGYFEDGGRWVLGFWASSASAILALILFLFGI 249
Query: 253 PRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHT 312
PRYRHFKP+GNPLSR C+VVVAATRKWKV++ + DL YE DG S N R +LHT
Sbjct: 250 PRYRHFKPSGNPLSRFCRVVVAATRKWKVEMPPEGEDL--YEVDG-DDCSGNCRRKMLHT 306
Query: 313 QGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTI 372
QGFKFLDKAAV+T K + E+ + R+PW +CTVTQVEEVKCILRLLPIWLCTI
Sbjct: 307 QGFKFLDKAAVLTAKER-------EQEDKESRSPWRICTVTQVEEVKCILRLLPIWLCTI 359
Query: 373 LYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERL 432
LYSVVFTQMASLFVEQGAAMKT + FHIPPASMSSFDI+SVAAFIFIYRRVLDPLV RL
Sbjct: 360 LYSVVFTQMASLFVEQGAAMKTTLLGFHIPPASMSSFDIVSVAAFIFIYRRVLDPLVARL 419
Query: 433 TRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQI 492
+ + RG TELQRMG+GL+IAI+AM++AG+VE FRLKY+ KDC CES+ S+LSIFWQI
Sbjct: 420 -KGTKARGLTELQRMGIGLIIAIIAMVAAGIVEWFRLKYAKKDCRQCESE-SSLSIFWQI 477
Query: 493 PQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKIST 552
PQYVLIGASEVFMYVGQLEFFN QAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMK ST
Sbjct: 478 PQYVLIGASEVFMYVGQLEFFNDQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKFST 537
Query: 553 R---PGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFEERTVGDNA 605
R PGWIP NLNKGHLDRFYFLLAALT AD +YIICA+WYK IK E + N+
Sbjct: 538 RDQMPGWIPSNLNKGHLDRFYFLLAALTMADFGVYIICAKWYKSIKLEGKYEDSNS 593
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461529|ref|XP_004148494.1| PREDICTED: nitrate transporter 1.5-like [Cucumis sativus] gi|449523169|ref|XP_004168597.1| PREDICTED: LOW QUALITY PROTEIN: nitrate transporter 1.5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/598 (74%), Positives = 497/598 (83%), Gaps = 16/598 (2%)
Query: 5 NVCNEVIVKEKIKNDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFG 64
+CNE + + K ++ E CTLDG +D HG+PAI+ ++G W+AGI+IL+NQGLATLAFFG
Sbjct: 6 EICNENLQGGETK-EEREVCTLDGTIDWHGQPAIRSKSGGWVAGIIILLNQGLATLAFFG 64
Query: 65 VGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124
VGVNLVLFLTRV+ QNNADAAN+VSKWTGTVYIFSL+GAFLSDSYWGRYKTCAIFQ IFV
Sbjct: 65 VGVNLVLFLTRVLQQNNADAANSVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQIIFV 124
Query: 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFG 184
IGLVSLS++S FL+KP GCGDE PC SHS L ALFYLSIYL ALGNGGYQPNIATFG
Sbjct: 125 IGLVSLSITSQLFLIKPKGCGDEDTPCESHSRLGNALFYLSIYLIALGNGGYQPNIATFG 184
Query: 185 ADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMA 244
ADQFDEED EGHSK+AFFSYFYLALNLGSLFSNTILGYFEDEG+WALGFW SAGSA A
Sbjct: 185 ADQFDEEDSTEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGVWALGFWVSAGSAFAA 244
Query: 245 LILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQN 304
L+LFL G PRYRHFKP+GNPLSR CQV+VAA +K V++ +L Y D K S N
Sbjct: 245 LVLFLCGIPRYRHFKPSGNPLSRFCQVIVAAAKKSTVKMPASGDEL--YSLDA-KDCSMN 301
Query: 305 GARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRL 364
R ILHT GFKFLD+AA I S D +N G G + NPW LC +TQVEEVKCILRL
Sbjct: 302 RGRRILHTHGFKFLDRAAYI---SSRDLDNQGRG----IGNPWRLCPITQVEEVKCILRL 354
Query: 365 LPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRV 424
LPIWLCTI+YSVVFTQMASLFVEQGAAMKT +S FHIPPASMSSFDILSVA FIF+YRRV
Sbjct: 355 LPIWLCTIIYSVVFTQMASLFVEQGAAMKTVVSNFHIPPASMSSFDILSVAVFIFLYRRV 414
Query: 425 LDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKAS 484
LDPL +L RKS ++G TELQRMG+GL+IA+MAM+SAG+VE +RLKY+ DC CE +S
Sbjct: 415 LDPLAGKL-RKSDSKGLTELQRMGIGLIIAVMAMVSAGIVECYRLKYAKGDCTHCEG-SS 472
Query: 485 TLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLV 544
+LSIFWQ+PQY IGASEVFMYVGQLEFFN Q PDGLKSFGSALCMTSISLGNYVSSLLV
Sbjct: 473 SLSIFWQVPQYAFIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLV 532
Query: 545 TIVMKISTR---PGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFEER 599
T+VMKIST PGWIPGNLN+GHLDRFYFLLA LT D +YI+CARWYK IK E +
Sbjct: 533 TMVMKISTEDHMPGWIPGNLNRGHLDRFYFLLAGLTAIDFAVYIMCARWYKCIKLEGK 590
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449511529|ref|XP_004163981.1| PREDICTED: nitrate transporter 1.5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/601 (75%), Positives = 510/601 (84%), Gaps = 17/601 (2%)
Query: 2 ALSNVCNEVIVKEKIKNDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLA 61
+L + ++ +KE+I E TLDG VD HGRPAI+ ++GTW+AGI+IL+NQGLATLA
Sbjct: 3 SLQSFEDQSKLKEEIAT--AEGFTLDGTVDFHGRPAIRSKSGTWVAGIIILLNQGLATLA 60
Query: 62 FFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA 121
FFGVGVNLVLFLTRV+ QNNADAANNVSKWTGTVYIFSL+GAFLSDSYWGRYKTCAIFQ
Sbjct: 61 FFGVGVNLVLFLTRVLQQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQI 120
Query: 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIA 181
IFVIGLVSLS+SS+ FL++P GCGDE PCGSHS ++LFYLSIYLTALGNGGYQPNIA
Sbjct: 121 IFVIGLVSLSLSSHLFLIRPKGCGDEQTPCGSHSKTEISLFYLSIYLTALGNGGYQPNIA 180
Query: 182 TFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSA 241
TFGADQFDEE KEGHSK+AFFSYFYLALNLGSLFSNTILG+FEDEGMWALGFW S GSA
Sbjct: 181 TFGADQFDEEYQKEGHSKVAFFSYFYLALNLGSLFSNTILGFFEDEGMWALGFWVSTGSA 240
Query: 242 TMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQT 301
AL+LFLIGTPRYR+FKPTGNPL R+ QVVV+A +KW++++ L ++ DG K++
Sbjct: 241 AAALLLFLIGTPRYRYFKPTGNPLMRVSQVVVSAAKKWRIKVPSGGEGL--FDDDG-KES 297
Query: 302 SQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCI 361
S NG R ILHT GFKFLDKAA I+ + +DK G + NPW LC +TQVEEVKCI
Sbjct: 298 SNNGCRKILHTHGFKFLDKAAYISSRDLSDKEQG-------VNNPWRLCPITQVEEVKCI 350
Query: 362 LRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIY 421
LRLLPIWLCTI+YSVVFTQMASLFVEQGAAMKT +S FHIPPASMSSFDILSVA FIF+Y
Sbjct: 351 LRLLPIWLCTIIYSVVFTQMASLFVEQGAAMKTTVSNFHIPPASMSSFDILSVALFIFLY 410
Query: 422 RRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCES 481
RRVLDP V +L +KS + G TELQRMGVGL+IA+MAM+SAG+VE +RLKY+ DC CE
Sbjct: 411 RRVLDPFVGKL-KKSSSTGLTELQRMGVGLIIAVMAMVSAGIVECYRLKYAQADCTHCEG 469
Query: 482 KASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSS 541
+S+LSIFWQ+PQY LIGASEVFMYVGQLEFFN QAPDGLKSFGSALCMTSISLGNYVSS
Sbjct: 470 -SSSLSIFWQVPQYALIGASEVFMYVGQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSS 528
Query: 542 LLVTIVMKIST---RPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFEE 598
LLVT+VMKIST PGWIPGNLNKGHLDRFYFLLAALT D IYI+CA+WYK IK EE
Sbjct: 529 LLVTMVMKISTVDRMPGWIPGNLNKGHLDRFYFLLAALTVVDFVIYIVCAKWYKSIKLEE 588
Query: 599 R 599
+
Sbjct: 589 K 589
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565426|ref|XP_003550941.1| PREDICTED: nitrate transporter 1.5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/596 (73%), Positives = 504/596 (84%), Gaps = 16/596 (2%)
Query: 7 CNEVIVKEKIKNDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVG 66
C EV + K K D EE TLDG+VD HGRPAI+ ++G W+AG ++L+NQGLATLAFFGVG
Sbjct: 3 CLEVSKEVKFKGDTEE-LTLDGSVDWHGRPAIRAKSGRWVAGTIVLLNQGLATLAFFGVG 61
Query: 67 VNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIG 126
VNLVLFLTRV+GQ+NA+AANNVSKWTGTVYIFSL+GAFLSDSYWGRYKTCAIFQ IFVIG
Sbjct: 62 VNLVLFLTRVMGQDNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIG 121
Query: 127 LVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGAD 186
LVSLS+SSY L++P GCG+E PCG HSSL M +FYLSIYL ALGNGGYQPNIATFGAD
Sbjct: 122 LVSLSLSSYLSLIRPKGCGNETIPCGKHSSLEMGMFYLSIYLIALGNGGYQPNIATFGAD 181
Query: 187 QFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALI 246
QFDEE KEG+SK+AFFSYFYLALNLGSLFSNTILGYFEDEG+WALGFW SAGSA AL+
Sbjct: 182 QFDEEHSKEGYSKVAFFSYFYLALNLGSLFSNTILGYFEDEGLWALGFWVSAGSAFAALV 241
Query: 247 LFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGA 306
LFL+GTPRYRHFKP+GNPLSR QV+VAA+RKW+ Q++ + DL + + ++ NG
Sbjct: 242 LFLLGTPRYRHFKPSGNPLSRFSQVLVAASRKWRAQMASNGEDLYVMDEN---ESPTNGN 298
Query: 307 RNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLP 366
R ILHT+GFKFLD+AA+I+ + D+ +G + NPW LC +TQVEEVKCILRLLP
Sbjct: 299 RKILHTEGFKFLDRAAIISSRDLEDQKSG-------VYNPWRLCPITQVEEVKCILRLLP 351
Query: 367 IWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLD 426
IWLCTI+YSVVFTQMASLFVEQGAAMKT IS F IPPASMSSFDILSVA FIF YRRV+D
Sbjct: 352 IWLCTIIYSVVFTQMASLFVEQGAAMKTTISHFRIPPASMSSFDILSVAVFIFFYRRVID 411
Query: 427 PLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTL 486
PLV RL +KS ++G TELQRMG+GLVIA+MAM+SAG+VE +RLKY+ C C S S+L
Sbjct: 412 PLVGRLKKKS-SKGLTELQRMGIGLVIAVMAMVSAGIVECYRLKYADPVCPHC-SGTSSL 469
Query: 487 SIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTI 546
+IFWQIPQY LIGASEVFMYVGQLEFFN Q PDGLKSFGSALCMTSISLGNYVSSLLV+I
Sbjct: 470 TIFWQIPQYTLIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVSI 529
Query: 547 VMKISTR---PGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFEER 599
VMKIST PGWIPGNLN+GHLDRFYFLLA LT+ DL +YI CA+W+K I+ E +
Sbjct: 530 VMKISTEDHMPGWIPGNLNRGHLDRFYFLLAILTSIDLVLYIACAKWFKSIQLEGK 585
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 613 | ||||||
| TAIR|locus:2033776 | 614 | NRT1.5 "nitrate transporter 1. | 0.964 | 0.962 | 0.695 | 2.2e-224 | |
| TAIR|locus:2119058 | 589 | NRT1.8 "NITRATE TRANSPORTER 1. | 0.931 | 0.969 | 0.701 | 1.5e-216 | |
| TAIR|locus:2183194 | 609 | AT5G19640 [Arabidopsis thalian | 0.495 | 0.499 | 0.584 | 8.8e-171 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.900 | 0.943 | 0.422 | 2.8e-121 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.910 | 0.978 | 0.402 | 2.7e-116 | |
| TAIR|locus:2041140 | 545 | PTR4 "peptide transporter 4" [ | 0.435 | 0.489 | 0.437 | 2.3e-114 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.699 | 0.752 | 0.438 | 1.5e-97 | |
| TAIR|locus:2161428 | 586 | AT5G46040 [Arabidopsis thalian | 0.486 | 0.508 | 0.350 | 1.6e-96 | |
| TAIR|locus:2161438 | 582 | PTR3 "peptide transporter 3" [ | 0.484 | 0.510 | 0.356 | 1.4e-95 | |
| TAIR|locus:1006230253 | 555 | AT3G54450 [Arabidopsis thalian | 0.866 | 0.956 | 0.355 | 1.1e-94 |
| TAIR|locus:2033776 NRT1.5 "nitrate transporter 1.5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2166 (767.5 bits), Expect = 2.2e-224, P = 2.2e-224
Identities = 423/608 (69%), Positives = 486/608 (79%)
Query: 7 CNEVIVKEKIKNDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVG 66
C E+ K+ +K + E T DG VD +GRP+I+ +G W+AGI+IL+NQGLATLAFFGVG
Sbjct: 3 CLEIYNKDTMKKKEGEEETRDGTVDYYGRPSIRSNSGQWVAGIVILLNQGLATLAFFGVG 62
Query: 67 VNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIG 126
VNLVLFLTRV+ QNNADAANNVSKWTGTVYIFSL+GAFLSDSYWGRYKTCAIFQ IFVIG
Sbjct: 63 VNLVLFLTRVLQQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIG 122
Query: 127 LVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGAD 186
L SLS+SSY FL++P GCGDE PCGSHS + + +FY SIYL ALG GGYQPNIAT GAD
Sbjct: 123 LSSLSLSSYMFLIRPRGCGDEVTPCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLGAD 182
Query: 187 QFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALI 246
QFDEE PKEG+SKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWAS GSA + LI
Sbjct: 183 QFDEEHPKEGYSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIGLI 242
Query: 247 LFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGI-KQTSQNG 305
LFL+GTPRYR+FKPTGNPLSR CQV+VAAT+K V+ + + Y+ D K S N
Sbjct: 243 LFLVGTPRYRYFKPTGNPLSRFCQVLVAATKKSSVEAPLRGREEM-YDGDSEGKNASVNT 301
Query: 306 ARNILHTQGFKFLDKAAVITRKSXXXXXXXXXXENIDMRNPWVLCTVTQVEEVKCILRLL 365
R I+HT FKFLDKAA IT + + D NPW LC VTQVEEVKCILRL+
Sbjct: 302 GRRIVHTDEFKFLDKAAYITARDLDD-------KKQDSVNPWRLCPVTQVEEVKCILRLM 354
Query: 366 PIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVL 425
PIWLCTI+YSVVFTQMASLFVEQGAAM T++S F IPPASMSSFDILSVA FIF+YRRVL
Sbjct: 355 PIWLCTIIYSVVFTQMASLFVEQGAAMNTSVSDFKIPPASMSSFDILSVALFIFLYRRVL 414
Query: 426 DPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKAST 485
+P+ R +K+G++G TEL RMG+GLVIA++AMI+AG+VE +RLKY+ K C C+ +S+
Sbjct: 415 EPVANRF-KKNGSKGITELHRMGIGLVIAVIAMIAAGIVECYRLKYADKSCTHCDG-SSS 472
Query: 486 LSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVT 545
LSIFWQ PQY LIGASEVFMYVGQLEFFN Q PDGLKSFGSALCM S+S+GN+VSSLLVT
Sbjct: 473 LSIFWQAPQYSLIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMMSMSMGNFVSSLLVT 532
Query: 546 IVMKISTR---PGWIPGNLNKGHLDRFYFXXXXXXXXDLFIYIICARWYKYIKFEERTVG 602
+V+KIST PGWIP NLNKGHLDRFYF DL +YI CA+WYK I+ E +
Sbjct: 533 MVVKISTEDHMPGWIPRNLNKGHLDRFYFLLAALTSIDLVVYIACAKWYKPIQLEGK--- 589
Query: 603 DNAHDIID 610
D D+ D
Sbjct: 590 DEMQDMSD 597
|
|
| TAIR|locus:2119058 NRT1.8 "NITRATE TRANSPORTER 1.8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2092 (741.5 bits), Expect = 1.5e-216, P = 1.5e-216
Identities = 412/587 (70%), Positives = 466/587 (79%)
Query: 14 EKIKNDQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFL 73
+K++ Q E CT DG+VDRHG PAI+ TG W+ ILILVNQGLATLAFFGVGVNLVLFL
Sbjct: 3 QKVR--QFEVCTQDGSVDRHGNPAIRANTGKWLTAILILVNQGLATLAFFGVGVNLVLFL 60
Query: 74 TRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVS 133
TRV+GQ+NA+AANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA FV GL+ LS+S
Sbjct: 61 TRVMGQDNAEAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQASFVAGLMMLSLS 120
Query: 134 SYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDP 193
+ A LL+PSGCG E +PC HS+ LFYLS+YL ALG GGYQPNIATFGADQFD ED
Sbjct: 121 TGALLLEPSGCGVEDSPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGADQFDAEDS 180
Query: 194 KEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTP 253
EGHSKIAFFSYFYLALNLGSLFSNT+LGYFED+G W LGFWASAGSA L+LFLIGTP
Sbjct: 181 VEGHSKIAFFSYFYLALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTP 240
Query: 254 RYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQ 313
+YRHF P +P SR CQV+VAATRK K+ + ++ +L Y+ +T G + ILHT+
Sbjct: 241 KYRHFTPRESPWSRFCQVLVAATRKAKIDVHHEELNL--YD----SETQYTGDKKILHTK 294
Query: 314 GFKFLDKAAVITRKSXXXXXXXXXXENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTIL 373
GF+FLD+AA++T E+ +PW LC+VTQVEEVKC+LRLLPIWLCTIL
Sbjct: 295 GFRFLDRAAIVTPDDEAEKV-----ESGSKYDPWRLCSVTQVEEVKCVLRLLPIWLCTIL 349
Query: 374 YSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLT 433
YSVVFTQMASLFV QGAAMKTNI F IP +SMSSFDILSVA FIF YRR LDPL RL
Sbjct: 350 YSVVFTQMASLFVVQGAAMKTNIKNFRIPASSMSSFDILSVAFFIFAYRRFLDPLFARLN 409
Query: 434 RKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIP 493
+ +G TELQRMG+GLVIAIMAMISAG+VEI RLK + + S +STLSIFWQ+P
Sbjct: 410 KTERNKGLTELQRMGIGLVIAIMAMISAGIVEIHRLKNKEPESATSISSSSTLSIFWQVP 469
Query: 494 QYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTR 553
QY+LIGASEVFMYVGQLEFFN QAP GLKSF SALCM SISLGNYVSSLLV+IVMKIST
Sbjct: 470 QYMLIGASEVFMYVGQLEFFNSQAPTGLKSFASALCMASISLGNYVSSLLVSIVMKISTT 529
Query: 554 P---GWIPGNLNKGHLDRFYFXXXXXXXXDLFIYIICARWYKYIKFE 597
GWIP NLNKGHL+RFYF D +Y+ICA+WYKYIK E
Sbjct: 530 DDVHGWIPENLNKGHLERFYFLLAGLTAADFVVYLICAKWYKYIKSE 576
|
|
| TAIR|locus:2183194 AT5G19640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 911 (325.7 bits), Expect = 8.8e-171, Sum P(2) = 8.8e-171
Identities = 183/313 (58%), Positives = 225/313 (71%)
Query: 15 KIKNDQEEACTLDGAVDRHGRPAIK--RRTGTWIAGILILVNQGLATLAFFGVGVNLVLF 72
++++DQ + D + K ++ G W I++LVNQGLATLAFFGVGVNLVLF
Sbjct: 31 EVQDDQSVVSLMSNDSDLQKKMMKKEEKKNGGWTNAIILLVNQGLATLAFFGVGVNLVLF 90
Query: 73 LTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSV 132
LTRV+GQ NA+AANNVSKWTGTVY+FSL+GAFLSDSYWGRY TC IFQ IFVIG+ LS
Sbjct: 91 LTRVMGQGNAEAANNVSKWTGTVYMFSLVGAFLSDSYWGRYLTCTIFQVIFVIGVGLLSF 150
Query: 133 SSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEED 192
S+ FL+KP GCGD C SSL +A+FYLS+YL A G GG+QP +ATFGADQ D++
Sbjct: 151 VSWFFLIKPRGCGDGDLECNPPSSLGVAIFYLSVYLVAFGYGGHQPTLATFGADQLDDDK 210
Query: 193 PKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGT 252
+SK AFFSYFY ALN+G+LFSNTIL YFED+G+W GF S GSA +AL+ FL T
Sbjct: 211 ----NSKAAFFSYFYFALNVGALFSNTILVYFEDKGLWTEGFLVSLGSAIVALVAFLAPT 266
Query: 253 PRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHT 312
+YR+ KP GNPL R+ QV VA RKW V D H+L YE +G +++ G+R I H+
Sbjct: 267 RQYRYVKPCGNPLPRVAQVFVATARKWSVVRPGDPHEL--YELEG-PESAIKGSRKIFHS 323
Query: 313 QGFKFLDKAAVIT 325
F FLD+AAVIT
Sbjct: 324 TKFLFLDRAAVIT 336
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
Identities = 242/573 (42%), Positives = 361/573 (63%)
Query: 27 DGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAAN 86
DG+VD +G P +K +TG W A IL N+ LA++G+ NL+ +LT + Q N AA
Sbjct: 27 DGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAAT 86
Query: 87 NVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGD 146
NV+ W GT Y+ L+GA L+D+YWGRY T A F I+ IG+ +L++S+ LKP+ C
Sbjct: 87 NVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAEC-- 144
Query: 147 EGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYF 206
G+ C S + A+F+ +YL ALG GG +P +++FGADQFD+ D +E K +FF++F
Sbjct: 145 IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWF 204
Query: 207 YLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLS 266
Y ++N+G+L S+++L + ++ W LGF +A+ F GTP YR KP G+P++
Sbjct: 205 YFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPIT 264
Query: 267 RICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITR 326
RI QVVVA+ RK V++ +D LL+ +D K ++ G+R I HT ++LDKAAVI+
Sbjct: 265 RISQVVVASFRKSSVKVPEDA-TLLYETQD--KNSAIAGSRKIEHTDDCQYLDKAAVISE 321
Query: 327 KSXXXXXXXXXXENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFV 386
+ D N W LCTVTQVEE+K ++R+ PIW I++S V+ QM+++FV
Sbjct: 322 EESKSG---------DYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFV 372
Query: 387 EQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQR 446
+QG AM I +F +PPA++ +FD SV ++ +Y R + PL + T +GFTE+QR
Sbjct: 373 QQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVD--KGFTEIQR 430
Query: 447 MGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKAST-LSIFWQIPQYVLIGASEVFM 505
MG+GL ++++ M +A +VEI RL + D ES A +S+ WQIPQY ++GA+EVF
Sbjct: 431 MGIGLFVSVLCMAAAAIVEIIRL-HMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFY 489
Query: 506 YVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTR---PGWIPGNLN 562
++GQLEFF Q+PD ++S SAL + + +LGNY+SSL++T+V +TR GWI NLN
Sbjct: 490 FIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLN 549
Query: 563 KGHLDRFYFXXXXXXXXDLFIYIICARWYKYIK 595
GHLD F++ ++ +Y A YK K
Sbjct: 550 SGHLDYFFWLLAGLSLVNMAVYFFSAARYKQKK 582
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1146 (408.5 bits), Expect = 2.7e-116, P = 2.7e-116
Identities = 234/581 (40%), Positives = 361/581 (62%)
Query: 19 DQEEACTLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVG 78
D ++ T DG +D H +PA K +TGTW A IL + LA++G+ NL+ +L + +
Sbjct: 3 DDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMN 62
Query: 79 QNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFL 138
N A+ +VS W+GT Y L+GAF++D+Y GRY T A F I++ G+ L++S+
Sbjct: 63 MENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPG 122
Query: 139 LKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHS 198
L P+ C G C + + A+ ++++YL ALG GG +P +++FGADQFD+ D KE S
Sbjct: 123 LTPT-CS--GETCHATAG-QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKES 178
Query: 199 KIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHF 258
K +FF++FY +N+G++ ++++L + + W G + +A++ F G+ YR
Sbjct: 179 KSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQ 238
Query: 259 KPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFL 318
KP G+PL+R+ QV+VA+ RK KV+I +D+ LL+ +D ++S G+R + HT+ F
Sbjct: 239 KPGGSPLTRMLQVIVASCRKSKVKIPEDE-SLLYENQDA--ESSIIGSRKLEHTKILTFF 295
Query: 319 DKAAVITRKSXXXXXXXXXXENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVF 378
DKAAV T W LCTVTQVEE+K ++RLLPIW I+++ V+
Sbjct: 296 DKAAVETESDNKGAAKSSS---------WKLCTVTQVEELKALIRLLPIWATGIVFASVY 346
Query: 379 TQMASLFVEQGAAMKTNIS-TFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSG 437
+QM ++FV QG + ++ F IP AS+S FD LSV + +Y +++ P + T
Sbjct: 347 SQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHE- 405
Query: 438 TRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVL 497
RGFT+LQR+G+GLVI+I +M+SAG++E+ RL Y ++ N + ++IFWQ+PQY L
Sbjct: 406 -RGFTQLQRIGIGLVISIFSMVSAGILEVARLNY-VQTHNLYNEETIPMTIFWQVPQYFL 463
Query: 498 IGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKIST---RP 554
+G +EVF ++GQLEFF QAPD ++S SAL +T+I+ GNY+S+ LVT+V K++ RP
Sbjct: 464 VGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRP 523
Query: 555 GWIPGNLNKGHLDRFYFXXXXXXXXDLFIYIICARWYKYIK 595
GWI NLN GHLD F++ + +Y+ A+WY Y K
Sbjct: 524 GWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKK 564
|
|
| TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 2.3e-114, Sum P(2) = 2.3e-114
Identities = 119/272 (43%), Positives = 175/272 (64%)
Query: 326 RKSXXXXXXXXXXENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLF 385
RKS E NPW LCTVTQVEEVK +LRL+PIW I++SV+ +Q+ +LF
Sbjct: 276 RKSNLKVPEDSTDEGDANTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLF 335
Query: 386 VEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQ 445
V+QG MK I F IPPA++ FD SV + IY RV+ PLV R T + +GFTELQ
Sbjct: 336 VQQGRCMKRTIGLFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLA--KGFTELQ 393
Query: 446 RMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCES-KASTLSIFWQIPQYVLIGASEVF 504
RMG+GL ++++++ A +VE RL+ + +D + ES L+IFWQIPQY L+G + VF
Sbjct: 394 RMGIGLFVSVLSLTFAAIVETVRLQLA-RDLDLVESGDIVPLNIFWQIPQYFLMGTAGVF 452
Query: 505 MYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPG-NLNK 563
+VG++EFF Q+PD ++S SA + + +LGNY+SSL++T+V +S + WIP N+N
Sbjct: 453 FFVGRIEFFYEQSPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLSGKDCWIPSDNINN 512
Query: 564 GHLDRFYFXXXXXXXXDLFIYIICARWYKYIK 595
GHLD F++ ++ +++ + Y ++K
Sbjct: 513 GHLDYFFWLLVSLGSVNIPVFVFFSVKYTHMK 544
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 197/449 (43%), Positives = 294/449 (65%)
Query: 151 CGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLAL 210
C +SS A+F++++Y+ ALG GG +P +++FGADQFDE D E K +FF++FY ++
Sbjct: 132 CHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSI 190
Query: 211 NLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQ 270
N+G+L + T+L + + W GF + +A+ F G+ YR +P G+PL+RI Q
Sbjct: 191 NVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQ 250
Query: 271 VVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSXX 330
V+VAA RK V++ +D LLF D +++ G+R ++HT KF DKAAV ++
Sbjct: 251 VIVAAFRKISVKVPEDK-SLLFETADD--ESNIKGSRKLVHTDNLKFFDKAAVESQSDSI 307
Query: 331 XXXXXXXXENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGA 390
NPW LC+VTQVEE+K I+ LLP+W I+++ V++QM+++FV QG
Sbjct: 308 KDGEV---------NPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGN 358
Query: 391 AMKTNIS-TFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGV 449
M ++ F IP AS+S FD +SV + +Y + + PL + TR RGFT+LQRMG+
Sbjct: 359 TMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNE--RGFTQLQRMGI 416
Query: 450 GLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQ 509
GLV++I AMI+AGV+E+ RL Y +K N+ + K +SIFWQIPQY+LIG +EVF ++GQ
Sbjct: 417 GLVVSIFAMITAGVLEVVRLDY-VKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQ 475
Query: 510 LEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTR---PGWIPGNLNKGHL 566
LEFF QAPD ++S SAL +T+++LGNY+S++LVT+VMKI+ + PGWIP NLN+GHL
Sbjct: 476 LEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHL 535
Query: 567 DRFYFXXXXXXXXDLFIYIICARWYKYIK 595
D F++ + +Y+ ++ YKY K
Sbjct: 536 DYFFYLLATLSFLNFLVYLWISKRYKYKK 564
|
|
| TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 1.6e-96, Sum P(2) = 1.6e-96
Identities = 106/302 (35%), Positives = 180/302 (59%)
Query: 25 TLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADA 84
T DG VD G + +TG W A ++V + +A++G+ NLV+++T + Q +
Sbjct: 11 TKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKS 70
Query: 85 ANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGC 144
+NNV+ W GT ++ +LGA+++D+++GRY T I AI+++G+ L++S LKP C
Sbjct: 71 SNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKC 130
Query: 145 GDEG-NPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203
C S + +A+F+ ++Y A+G GG +PNI+T GADQFDE DPK+ K +FF
Sbjct: 131 STANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFF 190
Query: 204 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGN 263
+++ ++ G+ F+ T+L Y +D WA+G+ S ++ +FL+GT YRH P G+
Sbjct: 191 NWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGS 250
Query: 264 PLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAV 323
P +++ +V+VA+ RK + +S D FYE ++ S+ A I T +FL++A++
Sbjct: 251 PFTKMARVIVASLRKAREPMSSDS--TRFYELPPMEYASKR-AFPIHSTSSLRFLNRASL 307
Query: 324 IT 325
T
Sbjct: 308 KT 309
|
|
| TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 1.4e-95, Sum P(2) = 1.4e-95
Identities = 108/303 (35%), Positives = 178/303 (58%)
Query: 25 TLDGAVDRHGRPAIKRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADA 84
T DG VD G P + G W A ++V + +A++G+ NL +++T + Q +
Sbjct: 11 TKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKS 70
Query: 85 ANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGC 144
+NNV+ W GT ++ +LGA++ D+ GRY T I AI+ G++ L++S +KP C
Sbjct: 71 SNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPEC 130
Query: 145 GDEG-NPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203
C S L +A+F+ ++Y A+G GG +PNI+T GADQFD DPKE K++FF
Sbjct: 131 STTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFF 190
Query: 204 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGN 263
+++ ++ G+LF+NT+L Y +D W LG+ +++ +FL+GTP YRH PTG+
Sbjct: 191 NWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGS 250
Query: 264 PLSRICQVVVAATRKWKVQISDDDHDLL-FYERDGIKQTSQNGARNILHTQGFKFLDKAA 322
P +++ +V+VA+ RK ++ HD+ F+E ++ + GA I T +FLD+A+
Sbjct: 251 PFTKMARVIVASFRKANAPMT---HDITSFHELPSLEY-ERKGAFPIHPTPSLRFLDRAS 306
Query: 323 VIT 325
+ T
Sbjct: 307 LKT 309
|
|
| TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 202/568 (35%), Positives = 323/568 (56%)
Query: 39 KRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIF 98
KR G W A + I+V + AF+G+ NL+ FLT +GQ+ A AA N++ W G +F
Sbjct: 10 KRTKGGWNAALFIIVVEIAERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVSCMF 69
Query: 99 SLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLH 158
+LGAFL+DS GR+KT + I+++G+V L +S + +
Sbjct: 70 PILGAFLADSILGRFKTVLLTSFIYLLGIVMLPLSVTVVARR----------------MR 113
Query: 159 MALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSN 218
+F++++Y+ A+G GG++P + TF ADQF E + +E +K +FF+Y+Y+A+ L S +
Sbjct: 114 EKVFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASSIAV 173
Query: 219 TILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRK 278
L + ++ W+LGF AGS +A+++FLIG P+YR P G+P +R+ QV+VAA +K
Sbjct: 174 LALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVAALKK 233
Query: 279 WKVQISDDDHDLLFYERDG--IKQTSQNGARNILHTQGFKFLDKAAVITRKSXXXXXXXX 336
W++ + + L + E D ++ T+ N + T F+FLDKA +I
Sbjct: 234 WRLSSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDE---------- 283
Query: 337 XXENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNI 396
++ RNPW LCTV QVEEVK ILRL+PIW+ I++ TQ+ + F++QG+ M I
Sbjct: 284 -IDHNKNRNPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTI 342
Query: 397 ST-FHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAI 455
F IPPA+ S +++ I +Y RV P+V ++T G T LQR+GVGL +A
Sbjct: 343 GNHFTIPPAAFQSIVGVTILILIPLYDRVFVPMVRKITNHHS--GITSLQRIGVGLFVAT 400
Query: 456 MAMISAGVVEIFRLKYSIKDCNSCESKAST--LSIFWQIPQYVLIGASEVFMYVGQLEFF 513
M+ G+VE RLK + +D +S +S W +PQY+L+G +VF VG E F
Sbjct: 401 FNMVICGLVEAKRLKVA-RDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELF 459
Query: 514 NGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPG--WIPGNLNKGHLDRFYF 571
Q P+ ++S G+A+ ++ + +G++VS+ +++ V IS G W+ NLN+ HLD +Y+
Sbjct: 460 YDQMPETMRSIGAAIFISVVGVGSFVSTGIISTVQTISKSHGEEWLVNNLNRAHLDYYYW 519
Query: 572 XXXXXXXXDLFIYIICARWYKYIKFEER 599
L Y+ A + Y K +++
Sbjct: 520 IIASLNAVSLCFYLFIANHFLYKKLQDK 547
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LQL2 | PTR14_ARATH | No assigned EC number | 0.7067 | 0.9657 | 0.9641 | yes | no |
| Q8GXN2 | PTR47_ARATH | No assigned EC number | 0.7174 | 0.9298 | 0.9677 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 613 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 7e-73 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 1e-35 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 2e-33 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 1e-13 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 5e-13 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 2e-07 | |
| PRK09584 | 500 | PRK09584, tppB, putative tripeptide transporter pe | 1e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-04 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 237 bits (608), Expect = 7e-73
Identities = 125/425 (29%), Positives = 189/425 (44%), Gaps = 57/425 (13%)
Query: 113 YKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALG 172
+KT + I+ IG V L++ + L P +ALFY+ +YL ALG
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPV---------------QVALFYIGLYLIALG 45
Query: 173 NGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWAL 232
GG +PN++ FGADQFDE + FFS+FY ++N GSL + I Y + + L
Sbjct: 46 TGGIKPNVSAFGADQFDETQDPR---RDGFFSWFYFSINAGSLIATIITPYLQQNVGYPL 102
Query: 233 GFWASAGSATMALILFLIGTPRYRHFKPTGN--PLSRICQVVVAATRKWKVQISDDDHDL 290
GF A +AL++FL+G+ RY+ P G I ++ AA + K+Q+ D H L
Sbjct: 103 GFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWL 162
Query: 291 LFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLC 350
+ K ++ ++ +HT + AVI + +
Sbjct: 163 YWALE---KYNKRSISQTKVHT-------RVAVIFIP-------------LPKFWA-LFD 198
Query: 351 TVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNI-STFHIPPASMSSF 409
V ++ IL +LPIW IL ++TQ+A+L V Q M I F IPPAS SF
Sbjct: 199 QQGSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSF 258
Query: 410 DILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRL 469
+ L+V + I ++ PL+ RG T QR G+G+ I I+A A +VE R
Sbjct: 259 NPLAVLILLPILDFLVYPLLR------LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRP 312
Query: 470 KYSIKDCNSCESKAST-LSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSAL 528
+Y + L I W +P+ + G G LEF P + S + L
Sbjct: 313 RY-AAALGLTSPGWTVPLFILWSLPELFISGVGL----AGALEFAPDALPSSMMSLWTLL 367
Query: 529 CMTSI 533
+
Sbjct: 368 SAAAA 372
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-35
Identities = 111/411 (27%), Positives = 181/411 (44%), Gaps = 80/411 (19%)
Query: 62 FFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA 121
++G+ LVL+L +G N A N +T Y+ L+GA ++DS+ G++KT
Sbjct: 3 YYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSL 62
Query: 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIA 181
++V+G S+ + L P LH AL + + L ALG GG +P ++
Sbjct: 63 VYVVGHALASLGAVPSLGHP---------------LHDALSLVGLALIALGTGGIKPCVS 107
Query: 182 TFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTI-------LGYFEDEGMWALGF 234
FG DQF EE + FFS+FY A+N GSLFS I +G F + + L F
Sbjct: 108 AFGGDQF-EERQLSLRFR--FFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAF 164
Query: 235 WASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYE 294
T+ALI+F +G+ Y+ P GN +S++ + +V A +K
Sbjct: 165 GVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR--------------- 209
Query: 295 RDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQ 354
+++ LH +LD AA I M
Sbjct: 210 -----FRTRSEDWPRLH-----WLDWAA--------------PKYLIRM----------- 234
Query: 355 VEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSV 414
+ K +LR+L +++ ++ +F Q S + Q M ++ F I P M + + L V
Sbjct: 235 IRSTKRLLRVLFLFIPLPMFWALFDQQGSRWTLQATRMDGDVGLFPIQPDQMQAVNPLLV 294
Query: 415 AAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVE 465
+ + D +V K GTR FT L++M VG+++A +A A +++
Sbjct: 295 LILV----PIFDYVVYPALAKCGTR-FTSLRKMAVGMLLAALAFAVAALLQ 340
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-33
Identities = 94/505 (18%), Positives = 180/505 (35%), Gaps = 105/505 (20%)
Query: 61 AFFGVGVNLVLFLTRVVGQNN----ADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTC 116
+++G+ L+L+L +G A S + VY+ ++G +L+D G +T
Sbjct: 36 SYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI 95
Query: 117 AIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGY 176
+ + IG + L++SS + Y+ + L +G G +
Sbjct: 96 VLGAILMAIGHLVLAISSVS---------------------GPGGLYIGLALIIVGTGLF 134
Query: 177 QPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWA 236
+PNI++ + + ++DP + F+ FY+ +N+GSL + I G W +GF
Sbjct: 135 KPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190
Query: 237 SAGSATMALILFLIGTPRY-----------RHFKPTGNPLSRICQVVVAATRKWKVQISD 285
+A + L++FL+G F L + +++AA +
Sbjct: 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLL---- 246
Query: 286 DDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRN 345
+QN +L + K
Sbjct: 247 ----------------NQNTFSGVLLVISILI--AIIYFAEAFRSPKVF----------- 277
Query: 346 PWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKT-NISTFHIPPA 404
+E + +L +P++L +++ ++ QM S I F +PPA
Sbjct: 278 ----------DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPA 327
Query: 405 SMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVV 464
S + + F I + L R ++ T +GL++A + + +
Sbjct: 328 WFQSLNPFFIILFSPILAALWTKLG-RGNKQPSTPIK-----FALGLILAGLGFLILLLA 381
Query: 465 EIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSF 524
I+ S +S++W + YVL E+F+ L AP LKSF
Sbjct: 382 GIWFGGPSGL-----------VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSF 430
Query: 525 GSALCMTSISLGN----YVSSLLVT 545
A+ +++ G V+ L
Sbjct: 431 IMAMWFLTVAAGQTLGGQVAGLTAV 455
|
Length = 498 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 1e-13
Identities = 41/210 (19%), Positives = 87/210 (41%), Gaps = 30/210 (14%)
Query: 61 AFFGVGVNLVLFL--TRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAI 118
+++G+ L ++L +G + A ++ VY+ + +G + D WG KT +
Sbjct: 25 SYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL 84
Query: 119 FQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQP 178
+ ++G L++S Y L + + A+G+G ++
Sbjct: 85 GGIVLMLGHFMLAMSIYPDL-----------------------IFYGLGTIAVGSGLFKA 121
Query: 179 NIATFGADQFDE-EDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWAS 237
N ++ ++ + P+ + F+ FY+++N+GS S + G + + +GF +
Sbjct: 122 NPSSMVGKLYERGDMPR----RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177
Query: 238 AGSATMALILFLIGTPRYRHFKPTGNPLSR 267
A + L+ F G R +PLS
Sbjct: 178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSG 207
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 5e-13
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 29/202 (14%)
Query: 60 LAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIF 119
+F+G+ L+L+LT + ++ A S + VY+ +LG FL+D G +
Sbjct: 23 FSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG 82
Query: 120 QAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPN 179
+ IG V L S +H + YLS+ + G G ++ N
Sbjct: 83 ALLMAIGHVVLGASE----------------------IHPSFLYLSLAIIVCGYGLFKSN 120
Query: 180 IATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAG 239
++ + ++ DP+ FS Y A N+GS+ + GY ++E WA+GF +A
Sbjct: 121 VSCLLGELYEPTDPRRDGG----FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176
Query: 240 SATMALILFLIGTPRYRHFKPT 261
L++FL G RHF T
Sbjct: 177 GMIAGLVIFLCGN---RHFTHT 195
|
Length = 493 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 14/108 (12%)
Query: 484 STLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLL 543
+T+SI WQ+PQYVL A EV V LEF QAP +KS AL + ++++GN ++
Sbjct: 548 NTVSILWQLPQYVLATAGEVMFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGN----II 603
Query: 544 VTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWY 591
V I+ + N+ + + L ++L + I+ I A Y
Sbjct: 604 VLIIAEF--------ENMAVQWAE--FVLFSSLMLVVMAIFSILAYTY 641
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 37/189 (19%), Positives = 87/189 (46%), Gaps = 28/189 (14%)
Query: 62 FFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA 121
++G+ + ++L + +G + AD+ S ++ VY +G +L D G +
Sbjct: 37 YYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV------ 90
Query: 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIA 181
++G + L++ YA + + S + Y+ + A+GNG ++ N +
Sbjct: 91 -IMLGAIVLAIG-YALV--------------AWSGHDAGIVYMGMATIAVGNGLFKANPS 134
Query: 182 TFGADQFDEEDPK-EGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGS 240
+ + ++++DP+ +G F+ +Y+++N+GS FS + + W++ F S
Sbjct: 135 SLLSTCYEKDDPRLDGA-----FTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVG 189
Query: 241 ATMALILFL 249
+ ++ F
Sbjct: 190 MLITVVNFA 198
|
Length = 500 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 42/202 (20%), Positives = 79/202 (39%), Gaps = 29/202 (14%)
Query: 49 ILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDS 108
+L+ + L + ++G+ L L+L V+G + A+A +S + + +LLG LSD
Sbjct: 178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD- 236
Query: 109 YWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYL 168
GR + + +IGL+ ++ L + +AL +++ L
Sbjct: 237 RLGRRRL------LLLIGLLLAALGLLLLAL----------------APSLALLLVALLL 274
Query: 169 TALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEG 228
G G P + T ++ ++ F +LG + G D G
Sbjct: 275 LGFGLGFAFPALLTLASELAPP------EARGTASGLFNTFGSLGGALGPLLAGLLLDTG 328
Query: 229 MWALGFWASAGSATMALILFLI 250
+ F A A +A +L L+
Sbjct: 329 GYGGVFLILAALALLAALLLLL 350
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 39/206 (18%), Positives = 68/206 (33%), Gaps = 31/206 (15%)
Query: 49 ILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDS 108
+L+ + L+ L + L L +G + + A VS ++ + SLL +LSD
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 109 YWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYL 168
+ R + ++GL+ ++ S S + L + +L
Sbjct: 61 FGRRR--------VLLLGLLLFALGSLLLAFASS----------------LWLLLVGRFL 96
Query: 169 TALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEG 228
LG G P A A+ F + F LG+L + G +
Sbjct: 97 LGLGGGALYPAAAALIAEWFPP------KERGRALGLFSAGFGLGALLGPLLGGLLAESL 150
Query: 229 MWALGFWASAGSATMALILFLIGTPR 254
W F A + +L L
Sbjct: 151 GWRWLFLILAILGLLLALLLLFLLRL 176
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 44/227 (19%), Positives = 74/227 (32%), Gaps = 30/227 (13%)
Query: 51 ILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYW 110
+ + LA L +G L L+L +G + + ++ ++ + L LSD +
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSD-RF 59
Query: 111 GRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTA 170
GR + + +IGL+ ++ L S + L + L
Sbjct: 60 GRRR-------VLLIGLLLFALGLLLLLFASS----------------LWLLLVLRVLQG 96
Query: 171 LGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMW 230
LG G P A AD F E+ + LG+ + G W
Sbjct: 97 LGGGALFPAAAALIADWFPPEE------RGRALGLLSAGFGLGAALGPLLGGLLASLFGW 150
Query: 231 ALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATR 277
F A A +A +L + PR P +V A +
Sbjct: 151 RAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 613 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.92 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.92 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.92 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.92 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.92 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.92 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.91 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.91 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.91 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.91 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.91 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.91 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.91 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.9 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.9 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.9 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.9 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.9 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.9 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.9 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.9 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.9 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.89 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.89 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.89 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.89 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.89 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.89 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.89 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.89 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.89 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.89 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.89 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.89 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.89 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.88 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.88 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.88 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.88 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.88 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.88 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.88 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.88 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.87 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.87 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.87 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.87 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.87 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.87 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.87 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.87 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.86 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.86 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.86 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.85 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.85 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.85 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.85 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.85 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.84 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.84 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.84 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.84 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.84 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.83 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.83 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.83 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.83 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.83 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.83 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.83 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.83 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.82 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.81 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.79 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.79 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.79 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.78 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.77 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.75 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.74 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.74 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.73 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.73 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.72 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.72 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.72 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.71 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.71 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.7 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.69 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.66 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.65 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.64 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.63 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.63 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.62 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.62 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.61 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.61 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.6 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.6 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.57 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.55 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.52 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.52 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.5 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.49 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.47 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.46 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.46 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.43 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.42 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.41 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.41 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.4 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.39 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.38 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.37 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.37 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.36 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.36 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.35 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.35 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.35 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.34 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.34 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.33 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.32 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.31 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.3 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.3 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.29 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.29 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.27 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.27 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.26 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.25 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.25 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.25 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.24 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.24 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.23 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.22 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.2 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.2 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.2 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.19 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.19 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.19 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.18 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.16 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.15 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.15 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.13 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.13 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.11 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.1 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.1 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.1 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.1 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.09 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.09 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.07 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.06 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.06 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.05 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.05 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.05 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.04 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.04 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.03 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.03 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.01 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.01 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.99 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.99 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.99 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.97 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.96 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.95 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.95 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.95 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.93 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.91 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.9 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.9 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.9 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.87 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.87 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.86 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.85 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.84 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.84 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.82 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.82 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.81 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.79 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.78 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.77 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.77 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.75 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.74 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.72 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.71 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.65 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.59 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.57 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.56 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.43 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.43 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.42 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.42 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.4 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.39 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.39 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.34 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.33 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.23 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.2 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.17 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.14 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.14 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.12 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.11 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.1 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.01 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.91 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.89 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.89 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.88 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.87 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.86 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.86 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 97.84 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.83 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.79 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.7 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.67 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.6 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.6 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.4 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.33 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.24 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.12 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.1 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.09 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.8 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.69 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.61 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.55 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.24 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.2 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.06 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.65 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.04 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 94.87 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 94.55 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.11 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 93.73 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.53 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 93.14 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 92.3 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 91.62 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 90.44 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 90.26 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 89.71 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 87.25 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 87.2 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 86.39 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 85.18 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 83.81 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 82.13 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 80.69 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 80.06 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=430.64 Aligned_cols=544 Identities=45% Similarity=0.736 Sum_probs=480.5
Q ss_pred ccCCCCCceec---ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007201 30 VDRHGRPAIKR---RTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLS 106 (613)
Q Consensus 30 ~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~ls 106 (613)
.+.+..+..+. .++.|+....++..+.+++.++|++..++..|+++++|.+...+...+..+.......++++++++
T Consensus 18 ~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~la 97 (571)
T KOG1237|consen 18 VDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLA 97 (571)
T ss_pred eeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34443444443 678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCC--CCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhh
Q 007201 107 DSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGC--GDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFG 184 (613)
Q Consensus 107 Dr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ 184 (613)
|.|+||++++.++.++..+|.+++.+++..|.+.|+.| .+.++.|+.+.......++.++.+.++|.|+..++..++-
T Consensus 98 D~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fG 177 (571)
T KOG1237|consen 98 DSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFG 177 (571)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhc
Confidence 99999999999999999999999999989999999987 5556677877777788999999999999999999999999
Q ss_pred hccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCh
Q 007201 185 ADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNP 264 (613)
Q Consensus 185 ~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 264 (613)
+|||++..+.+++.+.+.+.++|+..++|..++..+.-++.+..||.+.|.++.++.++++++++...+.+++++|.++|
T Consensus 178 adQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp 257 (571)
T KOG1237|consen 178 ADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSP 257 (571)
T ss_pred ccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCc
Confidence 99999877777777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCC
Q 007201 265 LSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMR 344 (613)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~ 344 (613)
...+.+++..+.++++...+.+ +.. . +. .....+...+++.+.++|++++..+.+ + .+..+.
T Consensus 258 ~t~i~~Vlvaa~~k~~~~~~~~-~~~-~-~~------~~~~~~~~~~t~~f~~l~kaa~~~~~~----~-----~~~~~~ 319 (571)
T KOG1237|consen 258 KTRIGQVLVAAAFKRKAVVSLD-PEE-L-YY------DCTDSVAIEGTKPFRFLDKAALKTSDD----L-----KDGLDA 319 (571)
T ss_pred hhHHHHHHHHHHHHHhccCCCc-chh-c-cc------cccccccccCCcccchhhHhhccCCcc----c-----cccccc
Confidence 9999999999999988876654 221 1 00 111112233466788999998876543 1 134456
Q ss_pred CCccccchhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccc-cccCccccccchhHHHHHHHHhhhh
Q 007201 345 NPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNIST-FHIPPASMSSFDILSVAAFIFIYRR 423 (613)
Q Consensus 345 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~l~~~ 423 (613)
+||+.|+.+++||.|.+++.++++...+++++++.|+.+.++.|+..|+++.++ +.+|++.++.+..+.+++..|+.++
T Consensus 320 ~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr 399 (571)
T KOG1237|consen 320 NPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDR 399 (571)
T ss_pred CCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcce
Confidence 899999999999999999999999999999999999999999999999999987 9999999999999999999999999
Q ss_pred hHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHH
Q 007201 424 VLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEV 503 (613)
Q Consensus 424 l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~ 503 (613)
++.|+.+|+++++ ++++...++.+|+.+..+++...+.++..|.+.... . .....++|.+|++++|+++|++|.
T Consensus 400 ~~vP~~~~~t~~~--~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~---~-~~~~~~mSi~W~iPQyvLig~~Ev 473 (571)
T KOG1237|consen 400 VIVPFARKLTGNP--FGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVS---L-LVETNPMSILWQIPQYVLLGAGEV 473 (571)
T ss_pred eehhhhhhhcCCC--CCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhh---c-cCCCCCeeHHHHHHHHHHHHHHHH
Confidence 9999999998877 788999999999999999999999999998886643 1 111578999999999999999999
Q ss_pred hhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcC-CCCCCC-CCCCcchhHHHHHHHHHHHHHHH
Q 007201 504 FMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKIST-RPGWIP-GNLNKGHLDRFYFLLAALTTADL 581 (613)
Q Consensus 504 ~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~-~~~~~~-~~~~~~~~~~~f~~~a~~~~~~~ 581 (613)
+.+++.+|+.++++|++||+.+++++.+..++|++++.++++++...+. .++|++ +++|.++++.+||+++....+..
T Consensus 474 f~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~ 553 (571)
T KOG1237|consen 474 FTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGKAAEWLGFANLNKGRLDYFYWLLAVYSAVNF 553 (571)
T ss_pred HHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCChhHhhhhHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999998887764 458999 99999999999999999999999
Q ss_pred HHHHHhhhhccccccc
Q 007201 582 FIYIICARWYKYIKFE 597 (613)
Q Consensus 582 ~~~~~~~~~~~~~~~~ 597 (613)
..+.++.++++.++.+
T Consensus 554 ~~~~~~~~~y~~~~~~ 569 (571)
T KOG1237|consen 554 LYFLICAKRYDYKDDK 569 (571)
T ss_pred hheEEEEEeeeecccc
Confidence 9998888888765544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=351.32 Aligned_cols=464 Identities=20% Similarity=0.329 Sum_probs=356.0
Q ss_pred ecccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchH
Q 007201 39 KRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVG----QNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYK 114 (613)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg----~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~ 114 (613)
+..-+|+|.++.++.++++|+++||++...+..|++.+++ +|++++..+.+.+....++.+++|||++||++|+||
T Consensus 14 ~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~ 93 (498)
T COG3104 14 MKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR 93 (498)
T ss_pred cccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 3445689999999999999999999999999999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCcc
Q 007201 115 TCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPK 194 (613)
Q Consensus 115 ~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~ 194 (613)
++..|.++.++|.+.++..+ ..+...++++..+..+|.|+.+++.+++++|++|+++++
T Consensus 94 tI~lGail~~iGh~~L~~~~---------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr 152 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISS---------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR 152 (498)
T ss_pred HHHHHHHHHHHHHHHHhccc---------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence 99999999999999988752 012556889999999999999999999999999999865
Q ss_pred ccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccC--CCCChh------h
Q 007201 195 EGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFK--PTGNPL------S 266 (613)
Q Consensus 195 ~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~------~ 266 (613)
|..+++++|++.|+|+.++|++.+++.+.+||+..|..+++...++++.+++.+++..... ++..|. .
T Consensus 153 ----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~ 228 (498)
T COG3104 153 ----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLP 228 (498)
T ss_pred ----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhh
Confidence 7789999999999999999999999999999999999999999999999988877654433 121111 1
Q ss_pred HHHHHHHHHHhhccccccCCcccchhhhcccccccccCCcccccccccchh-hhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 007201 267 RICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKF-LDKAAVITRKSDNDKNNGGDGENIDMRN 345 (613)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (613)
.....+......- ++... ..+...+ +....+..... ......
T Consensus 229 ~~~~~~~~~~~~~------------~~~~l--------------~~~~~~~~~~~~~i~~~~~-----------~~~~~~ 271 (498)
T COG3104 229 VLGGLVVMILAAL------------LTLLL--------------NQNTFSGVLLVISILIAII-----------YFAEAF 271 (498)
T ss_pred hHHHHHHHHHHHH------------HHHHH--------------HHHHHHHHHHHHHHHHHHH-----------HHHHHh
Confidence 1111111111100 00000 0000000 00000000000 000001
Q ss_pred CccccchhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehh-hcccCccccccCccccccchhHHHHHHHHhhhhh
Q 007201 346 PWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGA-AMKTNISTFHIPPASMSSFDILSVAAFIFIYRRV 424 (613)
Q Consensus 346 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l 424 (613)
.|. +.. +|||+++..+++++..++||+.++|+++.+..+.. ..+++..|+++|++++|++|++.+++++|+..++
T Consensus 272 ~~~---~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l 347 (498)
T COG3104 272 RSP---KVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAAL 347 (498)
T ss_pred ccC---ccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHH
Confidence 111 122 68999999999999999999999999998777654 4555656799999999999999999999999999
Q ss_pred HHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHh
Q 007201 425 LDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVF 504 (613)
Q Consensus 425 ~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~ 504 (613)
++|+.++. +++ ++..++..|+++++.+++++........+. ....|.+|++++|+++++||.+
T Consensus 348 ~~~l~~~~-~~p-----s~~~KFalGl~l~g~~fl~l~~~~~~~~~~-----------~~~~s~~~lil~y~l~s~gEL~ 410 (498)
T COG3104 348 WTKLGRGN-KQP-----STPIKFALGLILAGLGFLILLLAGIWFGGP-----------SGLVSVWWLVLSYVLQSFGELF 410 (498)
T ss_pred HhHhhcCC-CCC-----CcchHHHHHHHHHHHHHHHHHHHHHhhcCC-----------CCCcCHHHHHHHHHHHHHHHHH
Confidence 98877775 445 999999999999999999988775432111 3467899999999999999999
Q ss_pred hhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 007201 505 MYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIY 584 (613)
Q Consensus 505 ~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~ 584 (613)
.+|..++++++.+|+++++..||+|.+....|+.++..+.+.... + + ...+..+...+|+..+.++.+..+..
T Consensus 411 iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~-~-----~~~~~~~~~~~F~~~g~v~i~~~~~~ 483 (498)
T COG3104 411 ISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T-D-----PAYTAFIEGRVFGTIGVVAIVIGILL 483 (498)
T ss_pred hCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c-c-----hhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888777652110 0 0 01122344567888887777777766
Q ss_pred HHhhhhcc
Q 007201 585 IICARWYK 592 (613)
Q Consensus 585 ~~~~~~~~ 592 (613)
....++.+
T Consensus 484 ~~~~~~~~ 491 (498)
T COG3104 484 LLLSPKLN 491 (498)
T ss_pred HHhhHHHH
Confidence 66666543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=333.01 Aligned_cols=473 Identities=18% Similarity=0.221 Sum_probs=330.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007201 43 GTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAI 122 (613)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l 122 (613)
+|+|.++.++..++++++++|++..+++.|+++.+|+++.+++.+.+.+.+..+++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999955999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
..++.+++.... .+...++++..+..+|.|...++.+++++|+||+++++ |.++
T Consensus 86 ~~lg~lll~~~~----------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sg 139 (493)
T PRK15462 86 MAIGHVVLGASE----------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGG 139 (493)
T ss_pred HHHHHHHHHHhh----------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccce
Confidence 988877665431 01223445555667888888899999999999986422 8899
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCC-CCChhhH--HHHHHHHHHhhc
Q 007201 203 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKP-TGNPLSR--ICQVVVAATRKW 279 (613)
Q Consensus 203 ~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~ 279 (613)
++++|+..|+|+.++|.+.+++.+.+||+..|.++++..+++++.++..++.+.+..+ +.+|..+ .........---
T Consensus 140 f~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (493)
T PRK15462 140 FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVL 219 (493)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHH
Confidence 9999999999999999999999988999999999887777776666655544322211 1111111 000000000000
Q ss_pred cccccCCcccchhhhcccccccccCCcccccccccchhhhh-hhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHH
Q 007201 280 KVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDK-AAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEV 358 (613)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (613)
....+ -. ..... ..+....+-. ..+....- . -+........+||
T Consensus 220 ~~~~~----~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~er 264 (493)
T PRK15462 220 LVATP----AL-ITVLF--------------WKEWSVYALIVATIIGLGV-L---------------AKIYRKAENQKQR 264 (493)
T ss_pred HHHHH----HH-HHHHH--------------HHHHHHHHHHHHHHHHHHH-H---------------HHHHHhcCCHHHH
Confidence 00000 00 00000 0000000000 00000000 0 0000000123578
Q ss_pred HHHHHHHHHHHHhHHHhhhhhcccceeeee-hhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCC
Q 007201 359 KCILRLLPIWLCTILYSVVFTQMASLFVEQ-GAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSG 437 (613)
Q Consensus 359 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~ 437 (613)
|++..++.+++..++||..++|.++.+... ..++|++++|+++|+++++++|++.+++++|+...+..++.+| +
T Consensus 265 ~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~-~---- 339 (493)
T PRK15462 265 KELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG-N---- 339 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC-C----
Confidence 899999999999999999999999876544 3568888899999999999999999999999999875443222 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccC
Q 007201 438 TRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQA 517 (613)
Q Consensus 438 ~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~ 517 (613)
++++...|+.+|+++++++++++.+..... +. ...++.+|++..++++++||.+.+|..++++.+.+
T Consensus 340 -~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~----~~--------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~la 406 (493)
T PRK15462 340 -RTVRIWGKFALGLGLMSAGFCILTLSARWS----AM--------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIE 406 (493)
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHHhhc----CC--------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhC
Confidence 244899999999999999998887654321 00 12478899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHH-hHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHH--HHHHHHhhhhcccc
Q 007201 518 PDGLKSFGSALCMTSI-SLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTAD--LFIYIICARWYKYI 594 (613)
Q Consensus 518 P~~~rg~~~g~~~~~~-~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~--~~~~~~~~~~~~~~ 594 (613)
|++.+|+.||+|.+.. .+|+.+++.+.+.......++.-.. +-+..+|..+|...+.+++++ ++.+.++....|.|
T Consensus 407 P~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (493)
T PRK15462 407 IPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAI-NYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFR 485 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998854 7999888887775532111100000 001124667788887776655 34444444444443
Q ss_pred c
Q 007201 595 K 595 (613)
Q Consensus 595 ~ 595 (613)
+
T Consensus 486 ~ 486 (493)
T PRK15462 486 N 486 (493)
T ss_pred h
Confidence 3
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=335.52 Aligned_cols=466 Identities=14% Similarity=0.246 Sum_probs=333.5
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 007201 41 RTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQ 120 (613)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~ 120 (613)
.++|||.++.+++.++++++++|++..+++.|+++++|++.+++.++.+.+.+..++..+++|+++||++||||+++++.
T Consensus 9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~ 88 (489)
T PRK10207 9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA 88 (489)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999449999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhh
Q 007201 121 AIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKI 200 (613)
Q Consensus 121 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~ 200 (613)
+++.++.++++++.. ....++++|+++++|.|+..|+..++++|+||+++++ |+
T Consensus 89 ~~~~~g~~~~~~~~~----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~ 142 (489)
T PRK10207 89 IVLAIGYFMTGMSLL----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LD 142 (489)
T ss_pred HHHHHHHHHHHHhcc----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hh
Confidence 999999998887621 1234667899999999999999999999999987521 67
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCccccc--CCCCChhhHHHHHHHHHHhh
Q 007201 201 AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHF--KPTGNPLSRICQVVVAATRK 278 (613)
Q Consensus 201 ~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 278 (613)
+++++++++.|+|..+||.+++++.++.||++.|++..+...++++.+...++.+++. +|.+.+. |..+.+.....-
T Consensus 143 ~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l~~~~~ 221 (489)
T PRK10207 143 GAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLLLVLLGS 221 (489)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch-hhhhHHHHHHHH
Confidence 8899999999999999999999999999999999997766666665555554443322 2222221 221111100000
Q ss_pred ccccccCCcccchhhhcccccccccCCcccccccccchhhhhh----hhhccCCCCCCCCCCCCCCCCCCCCccccchhh
Q 007201 279 WKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKA----AVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQ 354 (613)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (613)
-.. .+... ..... .+ .......... .+..... .+.+
T Consensus 222 ~~~----------~~~~~-~~~~~----~~---~~~~~~~~~~~i~~~~f~~~~---------------------~~~~- 261 (489)
T PRK10207 222 VVM----------IFVCA-WLMHN----VE---VANLVLIVLSIVVTIIFFREA---------------------FKLD- 261 (489)
T ss_pred HHH----------HHHHH-HHHhh----hh---HHHHHHHHHHHHHHHHHHHHH---------------------hcCC-
Confidence 000 00000 00000 00 0000000000 0000000 0001
Q ss_pred hHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehh-hcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhc
Q 007201 355 VEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGA-AMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLT 433 (613)
Q Consensus 355 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~ 433 (613)
..++++.+..+.+++...++|..+.|..+.+..+.. .++....|+.+++++++++|++.++++.|+.+++. +|++
T Consensus 262 ~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~----~rl~ 337 (489)
T PRK10207 262 KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIY----THLG 337 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHH----HHHh
Confidence 134556666676788899999999999877665554 46666678888999999999999999999998764 3443
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhh
Q 007201 434 RKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFF 513 (613)
Q Consensus 434 ~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~ 513 (613)
+|. .++++..++.+|+++.+++++.+....... ... ....+.+|+++.+++.++||++.+|+.++++
T Consensus 338 ~r~--~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~--------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~ 404 (489)
T PRK10207 338 SKG--KDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA--------QGLTSPWFIVLVYLFQSLGELFISALGLAMI 404 (489)
T ss_pred hCC--CCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 332 345899999999999999987664332110 000 1245778899999999999999999999999
Q ss_pred hccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 007201 514 NGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKY 593 (613)
Q Consensus 514 ~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~ 593 (613)
.+.+|++++|.++|++++..++|+.++..+...+.. .. ....|.. ...++.++|...++.++++.++++++.++.++
T Consensus 405 ~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~-~~-~~~~~~~-~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~ 481 (489)
T PRK10207 405 AALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAV-PD-NITDPLE-TLPVYTNVFGKIGLVTLGVAVVMALMVPWLNR 481 (489)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc-ccccchh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888765421 00 0000000 12246788888888888888888777776544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=323.26 Aligned_cols=451 Identities=16% Similarity=0.255 Sum_probs=328.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 007201 42 TGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRV--VGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIF 119 (613)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~--lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~ 119 (613)
.+|+|.++.+++.++++++++|++.++++.|++++ +|++..+++.+.+.+.++..++++++|+++||++||||++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 45788999999999999999999999999999987 9999999999999999999999999999999944999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchh
Q 007201 120 QAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSK 199 (613)
Q Consensus 120 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r 199 (613)
.++..++.++++++ + +.+.+++++++.++|.|+..++..++++|++|++++++ |
T Consensus 86 ~~~~~~g~~~~~~~---~--------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~---r 139 (475)
T TIGR00924 86 GIVLMLGHFMLAMS---I--------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPR---R 139 (475)
T ss_pred HHHHHHHHHHHHhc---c--------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccc---c
Confidence 99999998888775 1 25567788999999999999999999999998765221 7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhH----HHH-HH--
Q 007201 200 IAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSR----ICQ-VV-- 272 (613)
Q Consensus 200 ~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~-- 272 (613)
+++++++|++.|+|+++||.+++++.+..||++.|++.++..+++.+.++..++.+++.++++.+... ..+ ..
T Consensus 140 ~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (475)
T TIGR00924 140 DGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLAL 219 (475)
T ss_pred cceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHH
Confidence 78999999999999999999999999888999999998876666666555555444322222211110 000 00
Q ss_pred ----HHHHhhccccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhcc-CCCCCCCCCCCCCCCCCCCCc
Q 007201 273 ----VAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITR-KSDNDKNNGGDGENIDMRNPW 347 (613)
Q Consensus 273 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~ 347 (613)
....+..... ... . ....+.+. .....++.. .. ...|
T Consensus 220 ~~~~~~~~~~~~~~-~~~-----~------------~~~~~~~~-----~~~~~~~~~~~~--------------~~~~- 261 (475)
T TIGR00924 220 LAALALVFFCAWLM-HHV-----V------------IANILLMT-----VTLAVIIFFFRL--------------AFKP- 261 (475)
T ss_pred HHHHHHHHHHHHHH-hcc-----H------------HHHHHHHH-----HHHHHHHHHHHH--------------HHhc-
Confidence 0000000000 000 0 00000000 000000000 00 0000
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceeee-ehhhcccCccccccCccccccchhHHHHHHHHhhhhhHH
Q 007201 348 VLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVE-QGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLD 426 (613)
Q Consensus 348 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~ 426 (613)
+.++ .++++..+++.+++...++|+.+.|+.+.+.. +...++.+++++++|+++++++|++.++++.|+.+++..
T Consensus 262 ---~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~ 337 (475)
T TIGR00924 262 ---RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWT 337 (475)
T ss_pred ---cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 0011 23455566788899999999999999986554 345577777788999999999999999999999887643
Q ss_pred HhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhh
Q 007201 427 PLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMY 506 (613)
Q Consensus 427 ~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~ 506 (613)
+ +.||. ++.+...++.+|+++.+++++.+++.... .+. ....+++|+++++++.++||.+..
T Consensus 338 ~----l~~~~--~~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~--------~~~~s~~~~i~~~~~~~~ge~~~~ 399 (475)
T TIGR00924 338 R----LGRKG--KDPTTPLKFTLGMLFCGASFLTFAASIWF----ADA--------GGLTSPWFMVLIYLFQTLGELMIS 399 (475)
T ss_pred H----HHhCC--CCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC--------CCccCHHHHHHHHHHHHHHHHHHh
Confidence 3 33322 23477889999999999999888765321 110 235788999999999999999999
Q ss_pred hhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 007201 507 VGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYII 586 (613)
Q Consensus 507 p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~ 586 (613)
|..++++++.+|++.||+++|++.+...+|+.+++.+.+..... .+..++|...++++++..+++++
T Consensus 400 p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 400 PLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP-------------QGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887754321 12345677777777777666666
Q ss_pred hhhhc
Q 007201 587 CARWY 591 (613)
Q Consensus 587 ~~~~~ 591 (613)
+.++.
T Consensus 467 ~~~~~ 471 (475)
T TIGR00924 467 MVPWL 471 (475)
T ss_pred HHHHH
Confidence 66654
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=324.09 Aligned_cols=457 Identities=16% Similarity=0.264 Sum_probs=328.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007201 43 GTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAI 122 (613)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l 122 (613)
+|+|.++.+++.++++++++|++..+++.|+++++|+++.+++++.+.+........+++|+++||++|||+++.++.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999988888777777889999999944999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
..++.+++.++. .+...++++++++++|.|...++..++++|++|+++++ |.++
T Consensus 98 ~~ig~~l~~~~~----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~ 151 (500)
T PRK09584 98 LAIGYALVAWSG----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGA 151 (500)
T ss_pred HHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhc
Confidence 998888877651 12455677888999999999999999999999876421 5568
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCccccc--CCCCChhhHH------HHHHHH
Q 007201 203 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHF--KPTGNPLSRI------CQVVVA 274 (613)
Q Consensus 203 ~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~ 274 (613)
++++|++.|+|+.+||.+++++.+.+||++.|++.++...++++.+++.++..++. +|+..+.+.. ......
T Consensus 152 ~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (500)
T PRK09584 152 FTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVAL 231 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHH
Confidence 88999999999999999999999989999999998876666655554443332222 2222221110 001111
Q ss_pred HHhhccccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhh
Q 007201 275 ATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQ 354 (613)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (613)
........ .. ++ . .++. ............ ++...+..
T Consensus 232 ~~~~~~~~-~~--~~--~-------------~~~~-----~~~~~~~~~~~~--------------------~~~~~~~~ 268 (500)
T PRK09584 232 IAIATWLL-HN--QE--I-------------ARMA-----LGVVALGIVVIF--------------------GKEAFAMK 268 (500)
T ss_pred HHHHHHHH-hc--ch--H-------------HHHH-----HHHHHHHHHHHH--------------------HHHHhhcC
Confidence 11100000 00 00 0 0000 000000000000 00000012
Q ss_pred hHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehh-hcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhc
Q 007201 355 VEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGA-AMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLT 433 (613)
Q Consensus 355 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~ 433 (613)
..++++.+..+.+++..++||+.+.|+++.+..+.. .++.++.|+.+++++++++|++.++++.|+.+++ .+|++
T Consensus 269 ~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~ 344 (500)
T PRK09584 269 GAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAI----YNKMG 344 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHH----HHHhC
Confidence 235666666677888899999999999988776654 3556667888999999999999999999999876 45555
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhh
Q 007201 434 RKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFF 513 (613)
Q Consensus 434 ~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~ 513 (613)
+|. +...++.+|+++++++++.+.+.... .+. ...++.+|+++++++.++||++..|..++++
T Consensus 345 ~r~-----~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~--------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~ 407 (500)
T PRK09584 345 DRL-----PMPHKFAIGMVLCSGAFLVLPLGAKF----AND--------AGIVSVNWLIASYGLQSIGELMISGLGLAMV 407 (500)
T ss_pred cCC-----CcHHHHHHHHHHHHHHHHHHHHHHHh----cCC--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 554 67889999999999999998765422 111 2356788999999999999999999999999
Q ss_pred hccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCC-CcchhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 007201 514 NGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNL-NKGHLDRFYFLLAALTTADLFIYIICARWYK 592 (613)
Q Consensus 514 ~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~ 592 (613)
.+.+|+++||+++|++.+...+|+.+++.+.+.+.. +....+.. ..++++++|..+++++++.+++++.+.++.+
T Consensus 408 ~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~ 483 (500)
T PRK09584 408 AQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAV----PDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLN 483 (500)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888877764321 00111111 1234778898888888877777777676654
Q ss_pred c
Q 007201 593 Y 593 (613)
Q Consensus 593 ~ 593 (613)
+
T Consensus 484 k 484 (500)
T PRK09584 484 R 484 (500)
T ss_pred H
Confidence 3
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=272.97 Aligned_cols=336 Identities=28% Similarity=0.497 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccc
Q 007201 60 LAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLL 139 (613)
Q Consensus 60 ~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~ 139 (613)
++||++...+..|+++.+|++++.+..+...+....++.++++|+++|+++||++++.++.++..+|..++++.+. |.
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~- 78 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PS- 78 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-cc-
Confidence 3689999999999999999999999999999999999999999999999999999999999999999988877522 21
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHH
Q 007201 140 KPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNT 219 (613)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~ 219 (613)
..+ .......++++.+.++|.|+..|+..++.+|+++++++ +.|.+++.++|+++|+|+.++++
T Consensus 79 ------------~~~-~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~ 142 (654)
T TIGR00926 79 ------------SGH-PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTI 142 (654)
T ss_pred ------------ccc-chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 12234567888889999999999999999999986432 22889999999999999999999
Q ss_pred HHHHhccc-------cchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccCCcccchh
Q 007201 220 ILGYFEDE-------GMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLF 292 (613)
Q Consensus 220 l~g~l~~~-------~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (613)
+.+++.+. .+|...|.+++++.+++++++...++++++++|.+++...+.+++..+.+++....+.+
T Consensus 143 i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~------ 216 (654)
T TIGR00926 143 ITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH------ 216 (654)
T ss_pred HHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc------
Confidence 99998743 36999999999999999988888888887777877777777777666665433211000
Q ss_pred hhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhH
Q 007201 293 YERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTI 372 (613)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 372 (613)
....|+|++... ...+.++++|++++++.+++...
T Consensus 217 --------------------~~~~~ld~a~~~-------------------------~~~~~V~evkrll~il~l~i~~~ 251 (654)
T TIGR00926 217 --------------------WPLHWLDYAKDK-------------------------HDIRMIRSTKRLLRVLVLFIPLP 251 (654)
T ss_pred --------------------cchhHHHHhccc-------------------------cccchHHHHHHHHHHHHHHHHHH
Confidence 012344443110 02246788999999999999999
Q ss_pred HHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHH
Q 007201 373 LYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLV 452 (613)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~ 452 (613)
+||.++.|+.+.+..|...++.+++++.+|+++++.+|++.++++.|+.+..++|..+|++.+. ++..++.+|++
T Consensus 252 ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~l-----s~l~k~~iG~~ 326 (654)
T TIGR00926 252 MFWALFDQQGSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRF-----TSLRKMAVGGL 326 (654)
T ss_pred HHHHHHhcchhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCC-----ChHHHHHHHHH
Confidence 9999999999999999988888888889999999999999999999999988999888865444 89999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 007201 453 IAIMAMISAGVVEIFRL 469 (613)
Q Consensus 453 l~~~~~~~~~~~~~~~~ 469 (613)
+.+++++++...+..++
T Consensus 327 la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 327 LAALSFFVAALVQLKVN 343 (654)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999988877665544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-23 Score=220.49 Aligned_cols=376 Identities=11% Similarity=0.030 Sum_probs=246.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
++.+..+++..+...+........++.|+++++|.++.+.+++.+.+.+...+++++.|+++||+ ||||++..+.++..
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence 46788888888999999888889999999999999999999999999999999999999999996 99999999998887
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
++...+.++....+ ....+...+++.|+++|++.+...+....++.|.+|+++ |+++.+
T Consensus 93 ~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~ 151 (399)
T PRK05122 93 LSGLLYLLAGLLAA---------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVIS 151 (399)
T ss_pred HHHHHHHHhhhhhc---------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchh
Confidence 77665554311010 001235678899999999999999999999999999888 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhcccccc
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQIS 284 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (613)
+...+.++|..+||.+++++.+..||+..+++.++..++..+ ..++ .+..++.+++
T Consensus 152 ~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~-------------------- 207 (399)
T PRK05122 152 WNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLL---LARP-RPAVPPVKGE-------------------- 207 (399)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH---HHhc-CCCCCCCCcc--------------------
Confidence 999999999999999999998888999887765544332222 1111 1100000000
Q ss_pred CCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHH-
Q 007201 285 DDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILR- 363 (613)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~- 363 (613)
+ .+++ +..|+...
T Consensus 208 ----~-------------------------------------------------------~~~~-------~~~~~~~~~ 221 (399)
T PRK05122 208 ----R-------------------------------------------------------LPFR-------RVLGRVWPY 221 (399)
T ss_pred ----c-------------------------------------------------------hhHH-------HHHHHHHHH
Confidence 0 0000 00000000
Q ss_pred HHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCCh
Q 007201 364 LLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTE 443 (613)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~ 443 (613)
.....+....+.......+.++. +.. .. ..+.......+..++..++.+++ .+|.+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~-~~~~~~~~~~~~~~~~~~~~g~l----~~r~~~~-------- 279 (399)
T PRK05122 222 GMGLALASIGFGTIATFITLYYA------ARG---WD-GAALALTLFGVAFVGARLLFGNL----INRLGGL-------- 279 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------Hcc---cc-cchHHHHHHHHHHHHHHHHHHHH----HHHhccH--------
Confidence 00011111111111111111110 001 00 11122223334444444555544 4554332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHH
Q 007201 444 LQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKS 523 (613)
Q Consensus 444 ~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg 523 (613)
+.+..+.++.+++++.+.... +.+..+...++.|++.+...|.......+..|++.||
T Consensus 280 -~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g 337 (399)
T PRK05122 280 -RVAIVSLLVEILGLLLLWLAP---------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRG 337 (399)
T ss_pred -HHHHHHHHHHHHHHHHHHHhc---------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHH
Confidence 245566666666665554321 2334456678889988888888777888899999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 007201 524 FGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICAR 589 (613)
Q Consensus 524 ~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~ 589 (613)
+++|+++....+|..+++.+.+.+.+.. +++..|++.+++.+++++..+...+
T Consensus 338 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 338 AALGAYSVFLDLSLGITGPLAGLVASWF-------------GYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998888765421 3566777777777776665554433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-22 Score=219.51 Aligned_cols=177 Identities=18% Similarity=0.208 Sum_probs=148.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007201 42 TGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA 121 (613)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~ 121 (613)
+++|..+.+.++..+.+....+......| .+.+++|.++.+.+++.+...++..++.++.|+++||+ ||||++..+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence 45666777777777777777766665555 44568999999999999999999999999999999996 99999999988
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
+..++.+.+.++ .+.+.+++.|++.|++.+...+...+++.|.+|+++ |++
T Consensus 89 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 139 (406)
T PRK11551 89 LFGLFSLATAQA-----------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGT 139 (406)
T ss_pred HHHHHHHHHHHh-----------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 888877776665 236778899999999999999999999999999888 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 007201 202 FFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFL 249 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~ 249 (613)
++++++.+.++|+.+++.+++.+.+..+|+..|++.+++.++..+...
T Consensus 140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (406)
T PRK11551 140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLM 187 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888888999998887655444443333
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-23 Score=233.05 Aligned_cols=155 Identities=12% Similarity=0.080 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCC
Q 007201 66 GVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCG 145 (613)
Q Consensus 66 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (613)
...+..++.+++|++..+.+++.+++.++.+++.+++|+++||+ |||++++++.++..++.++++++ +
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa---~-------- 253 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFV---Q-------- 253 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH---h--------
Confidence 34455567778999999999999999999999999999999996 99999999999888888887776 2
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhc
Q 007201 146 DEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFE 225 (613)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~ 225 (613)
+.+.++++|++.|++.|+..+...++++|.+|++. |++.+++......+|.++++.++.++.
T Consensus 254 ------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 254 ------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999999999999988 999999999999999999998776554
Q ss_pred cc-------------cchhHHHHHHHHHHHHHHHHHHH
Q 007201 226 DE-------------GMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 226 ~~-------------~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
.. .+|++.+++.++..+++++..++
T Consensus 316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 32 36888888776655554444333
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-23 Score=222.25 Aligned_cols=392 Identities=13% Similarity=0.066 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 007201 49 ILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLV 128 (613)
Q Consensus 49 ~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~ 128 (613)
..++...+...+........+|.+.+ +++.++.+.+++.+...+...+++++.|+++||+ |||+++..+.++..++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~ 97 (417)
T PRK10489 20 RAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFI 97 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHH
Confidence 34444456666665555666676654 6788999999999999999999999999999996 999999988777776665
Q ss_pred HHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHH
Q 007201 129 SLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYL 208 (613)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~ 208 (613)
.+......+ ..+.+.+++.+++.|++.+...++..+++.|.+|+++ |+++.++.+.
T Consensus 98 ~~~~~~~~~------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 153 (417)
T PRK10489 98 GLALNAFLP------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITML 153 (417)
T ss_pred HHHHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHH
Confidence 544321101 1236677888999999888888888999999999887 9999999999
Q ss_pred HHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccC-CCCChhhHHHHHHHHHHhhccccccCCc
Q 007201 209 ALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFK-PTGNPLSRICQVVVAATRKWKVQISDDD 287 (613)
Q Consensus 209 ~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (613)
..++|..+||.+++++.+..+|++.|++.++..+++.+..+.. ++.+.++ +..++..+
T Consensus 154 ~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~-------------------- 212 (417)
T PRK10489 154 TVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALPPPPQPREHPLRS-------------------- 212 (417)
T ss_pred HHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCCcccccchHH--------------------
Confidence 9999999999999999888899999888776655554443332 2111000 00000000
Q ss_pred ccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHHHH
Q 007201 288 HDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPI 367 (613)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 367 (613)
. +. +++ .....+.+......
T Consensus 213 ----~---------------------------~~------------------------~~~-----~~~~~~~~~~~~~~ 232 (417)
T PRK10489 213 ----L---------------------------LA------------------------GFR-----FLLASPVVGGIALL 232 (417)
T ss_pred ----H---------------------------HH------------------------HHH-----HHHcChHHHHHHHH
Confidence 0 00 000 00000111111111
Q ss_pred HHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHH
Q 007201 368 WLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRM 447 (613)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~ 447 (613)
......+.......+. + ....++.-....+.+.....+..++...+.+++ .+|. ...+.+
T Consensus 233 ~~~~~~~~~~~~~~p~-~------~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l----~~~~---------~~~~~l 292 (417)
T PRK10489 233 GGLLTMASAVRVLYPA-L------ADEVWQMGAAQIGLLYAAVPLGAALGALTSGWL----AHSA---------RPGLLM 292 (417)
T ss_pred HHHHHHHHhHHHhhHH-H------HHhccCCChhHhHHHHHHHHHHHHHHHHHHHHh----hhcc---------CcchHH
Confidence 1111111111111111 1 111110001112333344444455555555543 3332 122245
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHH
Q 007201 448 GVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSA 527 (613)
Q Consensus 448 ~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g 527 (613)
..+.++.+++++.+.+. .+.+......++.+++.+...+..++++.+..|++.||+++|
T Consensus 293 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g 351 (417)
T PRK10489 293 LLSTLGSFLAVGLFGLM---------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRING 351 (417)
T ss_pred HHHHHHHHHHHHHHHcc---------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 55666666666555322 133344556677788888777888889999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 007201 528 LCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFEERTV 601 (613)
Q Consensus 528 ~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (613)
+++....+|+.+++.+.+.+.+.. ++...++..+++.++..++.+...++.|++++||.++
T Consensus 352 ~~~~~~~~g~~~g~~l~G~l~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 352 LWTAQNVTGDAIGAALLGGLGAMM-------------TPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred HHHHHHhhhHhHHHHHHHHHHHHh-------------chhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 999999999999999999876532 1234566666666666666666667777777776644
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=216.73 Aligned_cols=374 Identities=13% Similarity=0.076 Sum_probs=240.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
|..++.+.+..+......|.....+| .+.+++|.++.+.++..+.+.++..+++++.|+++||+ ||||++..+.++..
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence 44455555555555444444333344 56778999999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
++.+.+.++ + +.+.+++.|+++|++.+...+...+++.|++|+++ |+++++
T Consensus 86 ~~~~~~~~~---~--------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g 136 (390)
T PRK03545 86 ASHVLSALA---W--------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALS 136 (390)
T ss_pred HHHHHHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHH
Confidence 998888876 2 37788999999999999888999999999999888 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhcccccc
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQIS 284 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (613)
++..+.++|..++|.+++.+.+..||++.|++.++..++..+..+...++.+++++ ++..+
T Consensus 137 ~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~----------------- 197 (390)
T PRK03545 137 LLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHS--GSLKS----------------- 197 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc--chHHH-----------------
Confidence 99999999999999999999888899999998877665554443332222111000 00000
Q ss_pred CCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHH
Q 007201 285 DDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRL 364 (613)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 364 (613)
. . +..++++.....
T Consensus 198 -------~----------------------------~-------------------------------~~~~~~~~~~~~ 211 (390)
T PRK03545 198 -------L----------------------------P-------------------------------LLFRRPALVSLY 211 (390)
T ss_pred -------H----------------------------H-------------------------------HHHhCcHHHHHH
Confidence 0 0 000000000111
Q ss_pred HHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChh
Q 007201 365 LPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTEL 444 (613)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~ 444 (613)
...+.....++.........+.. ..+++. ...+.+.....+..++...+.+++ .+|.++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~-~~g~s~------~~~~~~~~~~~~~~~~g~~~~g~l----~dr~~~~--------- 271 (390)
T PRK03545 212 LLTVVVVTAHFTAYSYIEPFVQQ-VAGLSE------NFATLLLLLFGGAGIIGSVLFSRL----GNRHPSG--------- 271 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCCCc------cHHHHHHHHHHHHHHHHHHHHHHH----hhccchh---------
Confidence 11111111122221111111100 001111 112333333444455555555544 4443321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHH
Q 007201 445 QRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSF 524 (613)
Q Consensus 445 ~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~ 524 (613)
.+.++..+.+.++...... ..+.+.++...++.|++.....+.....+.+..| +.|+.
T Consensus 272 -~~~~~~~~~~~~~~~l~~~--------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~ 329 (390)
T PRK03545 272 -FLLIAIALLLVCLLLLLPA--------------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDV 329 (390)
T ss_pred -HHHHHHHHHHHHHHHHHHH--------------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHH
Confidence 3444544444444333211 1133445556677788877777777788888877 57899
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 007201 525 GSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICAR 589 (613)
Q Consensus 525 ~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~ 589 (613)
++|+++....+|..+|+.+.+.+.+.. ++...|+..+.+.++++++++...+
T Consensus 330 ~~g~~~~~~~~g~~~G~~~~G~~~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 330 AMALFSGIFNIGIGAGALLGNQVSLHL-------------GLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-------------ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999988776422 3456788888888887777766554
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-22 Score=215.25 Aligned_cols=374 Identities=10% Similarity=0.025 Sum_probs=240.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
.+.++.+.+..+..........+.+|.|+.+++|.|+.+.+++.+.+.+...+++++.|+++||+ ||||+++.+.++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACG 92 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHH
Confidence 35677777777888888878888899999999999999999999999999999999999999996 99999999888776
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
++.+.+......+. ....+.+.++++|++.|++.+...+...+++.|.+|+++ |+++++
T Consensus 93 ~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~ 151 (392)
T PRK12382 93 LAGLAYLLAAILPV---------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMS 151 (392)
T ss_pred HHHHHHHhhhcccc---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhh
Confidence 65543332211111 001346788999999999999888888899999999888 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhcccccc
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQIS 284 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (613)
+++.+.++|..+||.+++++.+..||+..+.+..+..++. +... ++.++.++.++.
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~-------------------- 207 (392)
T PRK12382 152 WNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLA---WAFN-GTVRKVPAHAGE-------------------- 207 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH---HHHH-HhccCCCCCccc--------------------
Confidence 9999999999999999999988889987665543332221 1111 111110000000
Q ss_pred CCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHH
Q 007201 285 DDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRL 364 (613)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 364 (613)
. + +++ +..+...+ ..
T Consensus 208 -~-~---------------------------------------------------------~~~----~~~~~~~~--~~ 222 (392)
T PRK12382 208 -R-P---------------------------------------------------------SLW----SVVGLIWK--PG 222 (392)
T ss_pred -C-c---------------------------------------------------------hHH----HHHHHHHH--hH
Confidence 0 0 000 00000000 00
Q ss_pred HHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChh
Q 007201 365 LPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTEL 444 (613)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~ 444 (613)
....+....+.......+.++. +.. +. ..........+..++..++.+++ .+|.++|+
T Consensus 223 ~~~~l~~~~~~~~~~~~~~~~~------~~~---~~-~~~~~~~~~~~~~~~~~~~~g~l----~~r~g~~~-------- 280 (392)
T PRK12382 223 LGLALQGVGFAVIGTFVSLYFA------SKG---WA-MAGFTLTAFGGAFVLMRVLFGWM----PDRFGGVK-------- 280 (392)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH------hcC---Cc-hhHHHHHHHHHHHHHHHHHHHHH----HHhcCCCe--------
Confidence 0011111111111111111100 001 00 11122222333444555555554 55655443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHH
Q 007201 445 QRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSF 524 (613)
Q Consensus 445 ~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~ 524 (613)
.+..+..+.+++++.+.+.. +.+......++.+++.+...|.......+.+|++.||+
T Consensus 281 -~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~ 338 (392)
T PRK12382 281 -VAIVSLLVETVGLLLLWLAP---------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGT 338 (392)
T ss_pred -ehHHHHHHHHHHHHHHHHcc---------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHH
Confidence 44556666666665544321 23344556677888888888888788889999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 007201 525 GSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYII 586 (613)
Q Consensus 525 ~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~ 586 (613)
++|+++....+|+.+++.+.+.+.+.. +++..|.+.+++.++++++.++
T Consensus 339 ~~g~~~~~~~~g~~ig~~~~g~l~~~~-------------g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 339 ALGGYAAFQDIAYGVSGPLAGMLATSF-------------GYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-------------CchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998776532 2456777777777776665544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-22 Score=216.41 Aligned_cols=168 Identities=15% Similarity=0.192 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 007201 49 ILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLV 128 (613)
Q Consensus 49 ~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~ 128 (613)
++++...++...+.+.+.+.++.|+++++|+++.+.+.+.+...+...+..+++|+++||+ |||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 5677888899999999999999999999999999999999999999999999999999996 999999999999998888
Q ss_pred HHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHH
Q 007201 129 SLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYL 208 (613)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~ 208 (613)
.+.+. + +.+.+++.+++.|++.+...+...+++.|.+|+++ |+++.++.+.
T Consensus 92 ~~~~~---~--------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~ 142 (400)
T PRK11646 92 TMAIA---H--------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMM 142 (400)
T ss_pred HHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHH
Confidence 87765 2 36778889999999998888999999999999888 9999999999
Q ss_pred HHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 007201 209 ALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALIL 247 (613)
Q Consensus 209 ~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~ 247 (613)
..++|..+||.+++++. .+||+..|++.+...++..+.
T Consensus 143 ~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 143 QDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 679999999877665544433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-23 Score=219.92 Aligned_cols=176 Identities=17% Similarity=0.193 Sum_probs=150.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007201 44 TWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIF 123 (613)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~ 123 (613)
.+|+++.+.+..++.....+.+.++++.|+++++|+++.+++++.+.+.+++.+++++.|+++||+ |||+++.++.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence 346788888889999999999999999999999999999999999999999999999999999996 9999999998888
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
.++.+++.+. .+.+.+++.+.+.+.+.+...+...+..+|.+|+++ |++++
T Consensus 84 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 134 (395)
T PRK10054 84 ASGFIAIPLV-----------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIF 134 (395)
T ss_pred HHHHHHHHHH-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHH
Confidence 8887777765 125566667777777777778888999999999888 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
++.+...++|.++||.+++++.. .+|+..|++.+++.++..+....
T Consensus 135 g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 135 SLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875 78999999887766665544433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=216.26 Aligned_cols=179 Identities=15% Similarity=0.146 Sum_probs=153.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
.+.++++++..++.....+.+..++|.|.+ ++|.++.+.+++.+.+.++..++.+++|+++||+ ||||++..+.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 456788888888888888888888888775 6999999999999999999999999999999996 99999999988888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
++.+.+.++ + +.+.+++.|+++|++.+...+...+++.|.+|+++ |+++.+
T Consensus 87 ~~~~~~~~~---~--------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 137 (471)
T PRK10504 87 LGSLFCALS---G--------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMT 137 (471)
T ss_pred HHHHHHHHh---C--------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence 887776665 2 36778899999999999999999999999999887 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCc
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPR 254 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~ 254 (613)
+.+...++|..+||.+++++.+..||++.|++......++.+......++
T Consensus 138 ~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 138 FVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999988999999998876665555554444343
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-21 Score=216.20 Aligned_cols=400 Identities=12% Similarity=0.051 Sum_probs=244.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
|..+..+++..++.....-.+..-+|.. .+++|.+..+.+|+.+.+.++..++.+++|+++||+ |||+++.++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 4556667777777777766666656655 578999999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccC-CCCCccccchhhhHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQF-DEEDPKEGHSKIAFF 203 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-p~~~~~~~~~r~~~~ 203 (613)
++.+.++++ .+.+.++++|+++|+|.++..+.....+.+.+ |+++ |++++
T Consensus 83 ~~~~~~~~a-----------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~ 133 (495)
T PRK14995 83 LASLAAAFS-----------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMAL 133 (495)
T ss_pred HHHHHHHHc-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHH
Confidence 999998887 23788999999999999988888888887877 4566 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhH-H---HHH--HHHHHh
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSR-I---CQV--VVAATR 277 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~--~~~~~~ 277 (613)
+++....++|..+||.+++++.+..||++.|++...+.++.+++.....++.++++.+...... + ... +....+
T Consensus 134 g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~ 213 (495)
T PRK14995 134 GVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAK 213 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988766666555544444432221111111100 0 000 000111
Q ss_pred hccccccCCcccchhhhcccccccccCCcccccccccchh-hhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhH
Q 007201 278 KWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKF-LDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVE 356 (613)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (613)
. . .. ..+..+. +...--... +....+..+.. .+++-.|++. .+
T Consensus 214 ~--~--~~--~~~~~~~--------------~~~~~~~~~~~l~~f~~~e~~-----------~~~p~~~~~l-----f~ 257 (495)
T PRK14995 214 T--A--LK--GFLSLWV--------------TSLTLLTGALLLGLFIRTQLA-----------ASRPMIDMRL-----FT 257 (495)
T ss_pred h--c--cc--cCCchHH--------------HHHHHHHHHHHHHHHHHHHhc-----------CCCCCcCHHH-----hC
Confidence 0 0 00 0000000 000000000 00000000000 0000111111 11
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCC
Q 007201 357 EVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKS 436 (613)
Q Consensus 357 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~ 436 (613)
++......+..+.....++......+. +.... ...+ ....+.+.....+...+..++.+++ .+|+++|+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lq~v--~g~s----~~~ag~~~~~~~~~~~~~~~~~g~l----~~r~g~~~ 326 (495)
T PRK14995 258 HRIILSGVVMAMTAMITLVGFELLMAQ-ELQFV--HGLS----PLEAGMFMLPVMVASGFSGPIAGIL----VSRLGLRL 326 (495)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--cCCC----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCchH
Confidence 111111111111111111111111111 00000 0111 1123344444455666666777765 55654432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 007201 437 GTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQ 516 (613)
Q Consensus 437 ~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~ 516 (613)
.+..|+++.+++++.+.... ...+.+......++.|++.++..+.....+.+.
T Consensus 327 ---------~~~~g~~~~~~~~~~l~~~~------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~ 379 (495)
T PRK14995 327 ---------VATGGMALSALSFYGLAMTD------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAA 379 (495)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhc------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 45667777777766554331 112333445667888999999998888899999
Q ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 007201 517 APDGLKSFGSALCMTSISLGNYVSSLLVTIVMK 549 (613)
Q Consensus 517 ~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~ 549 (613)
+|++.++.+++++++.+.+|+.+|+.+.+.+..
T Consensus 380 ~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 380 APPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred CCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888754
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=220.51 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=137.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHH
Q 007201 44 TWIAGILILVNQGLATLAFFGVGVNLVLFLTRVV--------GQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKT 115 (613)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~l--------g~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~ 115 (613)
+.+.+++..+..+...+....+....+ .+++.+ +.++.+.+++.+++.++..++++++|+++||+ ||||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~ 87 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGTVE-SLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDS 87 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHhHH-HHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHH
Confidence 445555555555555444433333333 345554 88899999999999999999999999999996 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccc
Q 007201 116 CAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKE 195 (613)
Q Consensus 116 i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~ 195 (613)
+.++.+++.++.+.++++...-. +...++......++++|+++|++.|+..+...++++|++|+++
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~--- 153 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFT-----------SIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI--- 153 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccc-----------cccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh---
Confidence 99999998888777665310000 0000111235678899999999999999999999999999998
Q ss_pred cchhhhHHHHHHHHHhHHHHHHHHHHHHhc--------cccchhHHHHHHHHHHHHHHHHH
Q 007201 196 GHSKIAFFSYFYLALNLGSLFSNTILGYFE--------DEGMWALGFWASAGSATMALILF 248 (613)
Q Consensus 196 ~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~--------~~~g~~~~f~~~~~~~~i~~~~~ 248 (613)
|++++++.+.+..+|..+++.+++.+. +.+|||+.|++.++..++..+..
T Consensus 154 ---rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 154 ---RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLL 211 (479)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887765443 34689999998776665554433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-22 Score=207.94 Aligned_cols=358 Identities=13% Similarity=0.040 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 007201 51 ILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSL 130 (613)
Q Consensus 51 l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~ 130 (613)
++...++...........+|.|.. +++.++.+.+++.++..++..++.++.|+++||+ ||||++..+.++..++.+++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 455566666666666677777765 5899999999999999999999999999999996 99999999988888777776
Q ss_pred HhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHH
Q 007201 131 SVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLAL 210 (613)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~ 210 (613)
.+....+ ..+.+.+++.|++.|++.+...+...++++|.+|+++ |++.+++.+.+.
T Consensus 82 ~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 137 (365)
T TIGR00900 82 PFVALLG------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVR 137 (365)
T ss_pred HHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHH
Confidence 6652111 1247888999999999999999999999999999888 999999999999
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccCCcccc
Q 007201 211 NLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDL 290 (613)
Q Consensus 211 ~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (613)
++|..+||.+++++.+..||+..|++.++..+++.+..+..+.+.+++++ .++.. .+.
T Consensus 138 ~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------------------~~~ 195 (365)
T TIGR00900 138 SLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASE-IQALS---------------------NAV 195 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCcc-ccccc---------------------hhH
Confidence 99999999999999888899999988776655554444333221110000 00000 000
Q ss_pred hhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHH-HHHHH
Q 007201 291 LFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRL-LPIWL 369 (613)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~ 369 (613)
. .+.. ..++ .....|.+... +..++
T Consensus 196 -~-------------------------~~~~-----------------------~~~~-----~~~~~~~~~~~~~~~~~ 221 (365)
T TIGR00900 196 -L-------------------------RDTR-----------------------EGIK-----FVLKNPLLRTLLLLALL 221 (365)
T ss_pred -H-------------------------HHHH-----------------------hHHH-----HHHcCcHHHHHHHHHHH
Confidence 0 0000 0000 00000111111 11111
Q ss_pred HhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHH
Q 007201 370 CTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGV 449 (613)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~ 449 (613)
....+..........+..+. ...+ ....+.+.....+..++..++.+++ .+|.+++ ..+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~---------~~~~~ 282 (365)
T TIGR00900 222 FNLVFAPAIVALFPYVQSKY--LGRG----STHYGWVLAAFGLGALLGALLLGLL----GRYFKRM---------ALMTG 282 (365)
T ss_pred HHHHHHHHHHHHhHHHHHHH--hCCc----hHHHHHHHHHHHHHHHHHHHHHHHH----HHHhchh---------HHHHH
Confidence 12222111101111111100 0111 1112333334444455555555543 4454332 24445
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHH
Q 007201 450 GLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALC 529 (613)
Q Consensus 450 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~ 529 (613)
+..+.+++++.+.+.. + +.+......++.+++.+...+...++..+.+|++.||+++|+.
T Consensus 283 ~~~~~~~~~~~~~~~~-------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 342 (365)
T TIGR00900 283 AIFVIGLAILVVGLTP-------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQ 342 (365)
T ss_pred HHHHHHHHHHHHHhhc-------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5555666655554321 1 2445566778889999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhh
Q 007201 530 MTSISLGNYVSSLLVTIVMK 549 (613)
Q Consensus 530 ~~~~~lg~~i~~~l~~~i~~ 549 (613)
+....++..+++.+.+.+.+
T Consensus 343 ~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 343 FSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887654
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-21 Score=211.85 Aligned_cols=168 Identities=15% Similarity=0.087 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGL 127 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~ 127 (613)
++..++..+...+..+.+...+|.+. +++|++..+.+++.+.+.++..++++++|+++||+ |||+++.++.++..++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~ 102 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIIN 102 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHH
Confidence 33444444444454455556666554 57999999999999999999999999999999996 99999999999988888
Q ss_pred HHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHH
Q 007201 128 VSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFY 207 (613)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~ 207 (613)
++++++ .+.+.+++.|++.|++.|...+....++.|++|+++ |++++++++
T Consensus 103 ~~~~~~-----------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~ 153 (434)
T PRK11663 103 ILFGFS-----------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWN 153 (434)
T ss_pred HHHHHH-----------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHH
Confidence 887776 236778888999999999888999999999999888 999999999
Q ss_pred HHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 007201 208 LALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALI 246 (613)
Q Consensus 208 ~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~ 246 (613)
.+.++|..++|.+.+++.+.+||++.|++.++..++..+
T Consensus 154 ~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 154 TAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999998889999999887765544433
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-24 Score=227.27 Aligned_cols=365 Identities=36% Similarity=0.586 Sum_probs=238.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCC
Q 007201 113 YKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEED 192 (613)
Q Consensus 113 r~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~ 192 (613)
+|++.++.++.++|.+++.+++. |. ..+++.+.+.+++++.+.++|.|+.+|+..++.+||+++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~-~~-------------~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~ 66 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAI-PP-------------SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD 66 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHT-SS-------------SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred CHhhhHHHHHHHHHHHHhHHHHh-cc-------------hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence 48899999999999999877743 22 12233446789999999999999999999999999999874
Q ss_pred ccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCccccc-CCCCChhhH-HHH
Q 007201 193 PKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHF-KPTGNPLSR-ICQ 270 (613)
Q Consensus 193 ~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 270 (613)
+.+ |.++++++|++.|+|+.+++.+.+++.+..||.+.|.++++..+++++.++..+++++++ +|.+.+..+ ...
T Consensus 67 ~~~---~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~ 143 (372)
T PF00854_consen 67 DSR---RDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKL 143 (372)
T ss_dssp TTH---HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHH
T ss_pred hhh---hhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHH
Confidence 222 889999999999999999999999999999999999999999999999999888888777 666776666 445
Q ss_pred HHHHHHhhccccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccc-
Q 007201 271 VVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVL- 349 (613)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~- 349 (613)
++..+.+++....|.+ ..+ +.+.. .... ......... .. +........ ...|..
T Consensus 144 ~~~~~~~~~~~~~~~~-~~~-~~~~~--~~~~---~~~~~~~~~--~~-~~~~~~~~~---------------~~~~~~~ 198 (372)
T PF00854_consen 144 VLVAAFKKRKLAVPKG-SSW-LDWAL--FQYS---ERSIFGIIV--FI-RAAVIFFPE---------------IFFWALF 198 (372)
T ss_dssp HHHHHHHHHCCCH-HH-HHH-HHHHH--HHHC---CCCCCCCCC--HH-HHHHHHCCC---------------HHHHTTT
T ss_pred HHHHHHHHhhcccccc-hHH-HHHhh--hhhh---hhhhhhhhh--hc-cchhhhhhh---------------hhhcccC
Confidence 5555555555443322 221 11111 0000 000000000 00 000000000 001111
Q ss_pred cchhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccc-cccCccccccchhHHHHHHHHhhhhhHHHh
Q 007201 350 CTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNIST-FHIPPASMSSFDILSVAAFIFIYRRVLDPL 428 (613)
Q Consensus 350 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l 428 (613)
++++++++.|.+.+.+..+...+.++.+..+.......+...++..+.+ +++|+++++++|++.++++.|+.+++++|+
T Consensus 199 ~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~ 278 (372)
T PF00854_consen 199 CQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPL 278 (372)
T ss_dssp SSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCT
T ss_pred CccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHH
Confidence 2345566777777777777778888888888777777777777777777 899999999999999999999999999998
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhh
Q 007201 429 VERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVG 508 (613)
Q Consensus 429 ~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~ 508 (613)
.+ .++++ +...++.+|+++..++++....++..|...... ....+.+|.++.+++..++|.+..+.
T Consensus 279 ~~-~~~~~-----~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~--------~~~~~~~~~~~~~~~~~~~e~~l~~~ 344 (372)
T PF00854_consen 279 LR-RGIQP-----SPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQP--------CGKVSPWWQVPMYIFWLIPEYFLSGT 344 (372)
T ss_dssp TT-T-----------HHHHHHH-HHHHHHHHTTTHHHH---HH------------TT--THHHHHHHHHHHHHHHTTTTH
T ss_pred hh-hcccc-----hhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccc--------cCCCChhhHHHHHHHHHHHHHHhhHH
Confidence 88 33444 899999999999999999888777654433322 22334478889999999999999999
Q ss_pred hhhhhhccCCchhHHHHHHHHHHHH
Q 007201 509 QLEFFNGQAPDGLKSFGSALCMTSI 533 (613)
Q Consensus 509 ~~~~~~~~~P~~~rg~~~g~~~~~~ 533 (613)
..+...+.+|++..+..+|+++...
T Consensus 345 g~~~~~~~a~~~~p~~m~~~~~~~~ 369 (372)
T PF00854_consen 345 GESAAYEFAPSRAPSSMMGIWFALS 369 (372)
T ss_dssp HHHHHHHHTTTT-SSSSTHHHHHHH
T ss_pred HHHHHHHhhHHhhhHHHHHHHHHHh
Confidence 9997777777777777666666544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=207.35 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCC
Q 007201 67 VNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGD 146 (613)
Q Consensus 67 ~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (613)
+....++.+++|.++.+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++..+++++ +
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~---~--------- 80 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA---G--------- 80 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH---c---------
Confidence 3444567889999999999999999999999999999999996 99999999999888888888776 2
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhcc
Q 007201 147 EGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFED 226 (613)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~ 226 (613)
+.+.++++|++.|++.+...+....++.|.+|+++ |++++++.+...++|..++|.+++++.+
T Consensus 81 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 143 (399)
T TIGR00893 81 -----------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILI 143 (399)
T ss_pred -----------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 37789999999999999999999999999999888 9999999999999999999999999888
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHc
Q 007201 227 EGMWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 227 ~~g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
..+|++.|++.++..++..+..+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 144 HFSWQWAFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred hCCchHHHHHHHHHHHHHHHHhhhe
Confidence 8899999998876665555544443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=209.48 Aligned_cols=381 Identities=14% Similarity=0.073 Sum_probs=240.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh-----HHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNAD-----AANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQ 120 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~-----~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~ 120 (613)
+....+++..++...+++.....+|.|++ ++|.+..+ .+++.++..+...++.++.|+++||+ |||+++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~ 91 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence 44566667777888888888888998886 58888655 37888889999999999999999996 9999999998
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhh
Q 007201 121 AIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKI 200 (613)
Q Consensus 121 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~ 200 (613)
++..++.+++.+. .+.+.+++.|++.|++.+ ..+....++.|++|+++ |+
T Consensus 92 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~ 141 (408)
T PRK09874 92 LGMGIVMVLMGLA-----------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SG 141 (408)
T ss_pred HHHHHHHHHHHHH-----------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hh
Confidence 8888877776654 236778889999998755 45777788899999888 99
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhcc
Q 007201 201 AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWK 280 (613)
Q Consensus 201 ~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (613)
++.++.+.+.++|..++|.+++.+.+..+|+..|++.++..++..+..+...++.....+++.. .+. +
T Consensus 142 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~--- 209 (408)
T PRK09874 142 WALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-LHM--------R--- 209 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh-hHH--------H---
Confidence 9999999999999999999999998888999999888776665554444333221100000000 000 0
Q ss_pred ccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHH
Q 007201 281 VQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKC 360 (613)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 360 (613)
+ . .. ..++++.
T Consensus 210 --------~--~---------------------------~~--------------------------------~~~~~~~ 220 (408)
T PRK09874 210 --------E--V---------------------------VT--------------------------------SLKNPKL 220 (408)
T ss_pred --------H--H---------------------------HH--------------------------------hCcCCch
Confidence 0 0 00 0000011
Q ss_pred HHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCC
Q 007201 361 ILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRG 440 (613)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~ 440 (613)
....... ...+..........+..+...............+.+..+..+..++..++.+++ .+|++++.
T Consensus 221 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l----~dr~g~~~---- 289 (408)
T PRK09874 221 VLSLFVT---TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKL----GDRIGPEK---- 289 (408)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhccccch----
Confidence 1111100 111111111111111000000000000000001122223334445555555554 45654443
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCch
Q 007201 441 FTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDG 520 (613)
Q Consensus 441 ~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~ 520 (613)
.+..+..+.+++++..... .+.+.+....++.+++.+...|...+.+.+..|++
T Consensus 290 -----~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (408)
T PRK09874 290 -----ILITALIFSVLLLIPMSFV---------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQ 343 (408)
T ss_pred -----hHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcc
Confidence 4445555554444443322 12334455667788999988998888988999999
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 007201 521 LKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICAR 589 (613)
Q Consensus 521 ~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~ 589 (613)
.+|..+|+++....+|..++|.+.+.+.+.. +++..|.+.+++.+++++..+...+
T Consensus 344 ~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-------------g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 344 IAGRIFSYNQSFRDIGNVTGPLMGAAISANY-------------GFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred cceeeehHHHHHHHHHHHhhHHHHHHHHhhc-------------chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988775421 3466788888877777666655433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=213.55 Aligned_cols=143 Identities=19% Similarity=0.270 Sum_probs=122.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHH
Q 007201 81 NADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMA 160 (613)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (613)
..+.+++.+++.++..++.++.|+++||+ |||++++++.++..++..++..... ..+.+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~ 128 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF--------------------ALSVE 128 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc--------------------ccchH
Confidence 89999999999999999999999999996 9999999999999888887766521 12356
Q ss_pred HHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHH---HHhccccchhHHHHHH
Q 007201 161 LFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTIL---GYFEDEGMWALGFWAS 237 (613)
Q Consensus 161 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~---g~l~~~~g~~~~f~~~ 237 (613)
.++++|++.|++.+...+....+++|.+|+++ |++++++++.+.++|..+++.++ +......+|++.|++.
T Consensus 129 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~ 202 (481)
T TIGR00879 129 MLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ 202 (481)
T ss_pred HHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHH
Confidence 78899999999999999999999999999998 99999999999999999999998 6666778999999986
Q ss_pred HHHHHHHHHHHHH
Q 007201 238 AGSATMALILFLI 250 (613)
Q Consensus 238 ~~~~~i~~~~~~~ 250 (613)
++..++..+..++
T Consensus 203 ~~~~~~~~~~~~~ 215 (481)
T TIGR00879 203 LIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHHHHhc
Confidence 6555544443333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-21 Score=210.40 Aligned_cols=181 Identities=18% Similarity=0.128 Sum_probs=135.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH
Q 007201 43 GTWIAGILILVNQGLATLAFFGVGVNLVLFLTRV-----VGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCA 117 (613)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~ 117 (613)
.+++.+.++.+..+...+....+....+. +..+ .+.++.+.+++.+...++..++.++.|+++||+ |||+++.
T Consensus 13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~ 90 (502)
T TIGR00887 13 QHFRAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYG 90 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHH
Confidence 34455555555555555555444443443 3332 234566778999999999999999999999996 9999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccc
Q 007201 118 IFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGH 197 (613)
Q Consensus 118 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~ 197 (613)
++.++..++.++++++. + .....+.+.++++|++.|++.|+..+..+.+++|.+|+++
T Consensus 91 ~~~~~~~v~~~~~~~~~---~--------------~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~----- 148 (502)
T TIGR00887 91 MELIIMIIATVASGLSP---G--------------SSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW----- 148 (502)
T ss_pred HHHHHHHHHHHHHHHcc---C--------------cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh-----
Confidence 99999988888777651 1 0001235789999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHhcc-----------------------ccchhHHHHHHHHHHHHHHHHH
Q 007201 198 SKIAFFSYFYLALNLGSLFSNTILGYFED-----------------------EGMWALGFWASAGSATMALILF 248 (613)
Q Consensus 198 ~r~~~~~~~~~~~~iG~~~gp~l~g~l~~-----------------------~~g~~~~f~~~~~~~~i~~~~~ 248 (613)
|+++.++.+....+|..+++.++.++.. .++||+.|.+.++..++..+..
T Consensus 149 -Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~ 221 (502)
T TIGR00887 149 -RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR 221 (502)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888765421 2479999977766555444433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-21 Score=207.70 Aligned_cols=361 Identities=14% Similarity=0.046 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccC
Q 007201 61 AFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLK 140 (613)
Q Consensus 61 ~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~ 140 (613)
.++.+...+| .+.+++|+|..+.+++.+.+.++..+++++.|+++||+ |||+++..+..++.++.+.++++ |+
T Consensus 24 ~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a---~~-- 96 (393)
T PRK09705 24 LLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY---PQ-- 96 (393)
T ss_pred hhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC---cc--
Confidence 3344555555 55679999999999999999999999999999999996 99999999999999999999987 22
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHH
Q 007201 141 PSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTI 220 (613)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l 220 (613)
.+.++++|++.|++.+...+....++.+++| ++ |+++++.+..+.+.|..+|+.+
T Consensus 97 ------------------~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~ 151 (393)
T PRK09705 97 ------------------SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAI 151 (393)
T ss_pred ------------------hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHH
Confidence 6678899999999999999999999999987 66 8899999999999999999999
Q ss_pred HHHhcccc-chhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccCCcccchhhhccccc
Q 007201 221 LGYFEDEG-MWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIK 299 (613)
Q Consensus 221 ~g~l~~~~-g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (613)
++++.++. +|+..+.+.++..++.....+...++.+++++++ +.
T Consensus 152 ~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~--------- 196 (393)
T PRK09705 152 TPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVASSHKT--------------------------TT--------- 196 (393)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCC--------------------------Cc---------
Confidence 99887764 7998776554443333332222211110000000 00
Q ss_pred ccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhHHHhhhhh
Q 007201 300 QTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFT 379 (613)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 379 (613)
.+.+ ...+++.+...+........++....
T Consensus 197 ---------------------------------------------~~~~-----~l~~~~~~~l~~~~~~~~~~~~~~~~ 226 (393)
T PRK09705 197 ---------------------------------------------TPVR-----VVFTPRAWTLGVYFGLINGGYASLIA 226 (393)
T ss_pred ---------------------------------------------CCcc-----cccCHhHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00011111111222222333333333
Q ss_pred cccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHH
Q 007201 380 QMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMI 459 (613)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~ 459 (613)
+.+.++.. ...+ ....+....+..+..++..++.+++ .+|.++++ .+.+++.+.+++++
T Consensus 227 ~lp~~l~~--~g~s------~~~ag~~~~~~~i~~i~g~~~~g~l----~~r~~~~~---------~~~~~~~l~~~~~~ 285 (393)
T PRK09705 227 WLPAFYIE--IGAS------AQYSGSLLALMTLGQAAGALLMPAM----ARHQDRRK---------LLMLALVLQLVGFC 285 (393)
T ss_pred HHHHHHHH--cCCC------hhhhhHHHHHHHHHHHHHHHHHHHH----HhhccchH---------HHHHHHHHHHHHHH
Confidence 33332211 1111 1112333444445555555555544 55554332 45556666666655
Q ss_pred HHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccC-CchhHHHHHHHHHHHHhHHHH
Q 007201 460 SAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQA-PDGLKSFGSALCMTSISLGNY 538 (613)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~-P~~~rg~~~g~~~~~~~lg~~ 538 (613)
.+.... . . .. .. ..++.+++.+...|.......+.. |++.+|+.+|+.+....++..
T Consensus 286 ~~~~~~-----------------~-~-~~-~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 343 (393)
T PRK09705 286 GFIWLP-----------------L-Q-LP-VL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAG 343 (393)
T ss_pred HHHHcc-----------------c-h-HH-HH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 443221 1 1 11 11 123456776677777666666776 467899999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 007201 539 VSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKY 593 (613)
Q Consensus 539 i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~ 593 (613)
++|.+.+.+.+.++ .+...|.+.++.+++..+..+.+.++++.
T Consensus 344 ~gp~~~G~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 344 LAPWFSGVLRSISG------------NYLMDWAFHALCVVGLMIITLRFAPARFP 386 (393)
T ss_pred HHHHHHHHHHHHhC------------CchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999998876431 23445666666666665555555555443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=209.81 Aligned_cols=179 Identities=12% Similarity=0.096 Sum_probs=147.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007201 44 TWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIF 123 (613)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~ 123 (613)
+|+.++.+++..+++......+. .....+++++|+++.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~-~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIG-FAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHH-HHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence 45666666666565555554444 444588999999999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
.++.++++++ + +.+.+++.|++.|++.+...+....+++|++|+++ |++++
T Consensus 84 ~~~~~~~~~~---~--------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~ 134 (412)
T TIGR02332 84 GIASTATMFA---T--------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARAN 134 (412)
T ss_pred HHHHHHHHHh---c--------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHH
Confidence 9998888876 2 36778999999999999999999999999999888 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhcc------ccchhHHHHHHHHHHHHHHHHHHHcCC
Q 007201 204 SYFYLALNLGSLFSNTILGYFED------EGMWALGFWASAGSATMALILFLIGTP 253 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~------~~g~~~~f~~~~~~~~i~~~~~~~~~~ 253 (613)
++++.+.++|..+++.+++++.+ ..|||+.|++.++..++..++.++..+
T Consensus 135 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~ 190 (412)
T TIGR02332 135 ALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLD 190 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999998763 368999999877665554444444333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-21 Score=210.72 Aligned_cols=175 Identities=15% Similarity=0.067 Sum_probs=129.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh-HHH-----HHHHHHHHHHHHHHHHHHHhhhccCchHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNAD-AAN-----NVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAI 118 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~-~~~-----~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~ 118 (613)
++.++...+..+++.+-+.. ..+...++.++++.+..+ ..+ ..++..++..++++++|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 45566666777777766554 445556777777543322 112 13566778889999999999996 99999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccch
Q 007201 119 FQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHS 198 (613)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~ 198 (613)
+.+++.++.++++++ |++. ...-..+.++++.|+++|++.|+..+...++++|++|+++
T Consensus 93 ~~~l~~i~~~~~a~~---~~~~------------~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------ 151 (490)
T PRK10642 93 TIVIMSISTFCIGLI---PSYA------------TIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------ 151 (490)
T ss_pred HHHHHHHHHHHHHhc---ccHH------------HHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------
Confidence 999999999999887 3310 0000001248899999999999999999999999999998
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhc--------cccchhHHHHHHHHHHH
Q 007201 199 KIAFFSYFYLALNLGSLFSNTILGYFE--------DEGMWALGFWASAGSAT 242 (613)
Q Consensus 199 r~~~~~~~~~~~~iG~~~gp~l~g~l~--------~~~g~~~~f~~~~~~~~ 242 (613)
|++..++...+..+|..+|+.+...+. ..+|||+.|++.++..+
T Consensus 152 Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 152 RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 999999988888888888876654432 25799999998665433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-21 Score=211.24 Aligned_cols=178 Identities=13% Similarity=0.046 Sum_probs=135.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007201 42 TGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA 121 (613)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~ 121 (613)
+++++.++......++.....+.+...++ ++.+++|++..+.+++.+.+.+++.++++++|+++||+ |||+++..+.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~ 109 (476)
T PLN00028 32 RPHMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLM 109 (476)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence 34555666666655666666655554444 66789999999999999999999999999999999996 99999999888
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
+..++.++++++ .+.+.+++.|++.|++.+... ....+++|++|+++ |++
T Consensus 110 ~~~~~~~~~~~~-----------------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~ 159 (476)
T PLN00028 110 LTAPAVFCMSLV-----------------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGT 159 (476)
T ss_pred HHHHHHHHHHHh-----------------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeH
Confidence 888887777766 136667788999999887643 35567899999988 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhc----c-----ccchhHHHHHHHHHHHHHHHHHHHc
Q 007201 202 FFSYFYLALNLGSLFSNTILGYFE----D-----EGMWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l~----~-----~~g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
++++.+...++|+.+++.+.+.+. + ..|||+.|++.+++.++..+..++.
T Consensus 160 a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 160 ANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888888776665442 1 2489999998887666555444443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-21 Score=202.97 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccc
Q 007201 59 TLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFL 138 (613)
Q Consensus 59 ~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~ 138 (613)
+.+.+.+...+ ..+++++|+++.+.+++.+.+.+++.+++++.|+++||+ |||+++..+......+.. ....
T Consensus 4 ~~~~~~~~~~l-p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~----- 75 (368)
T TIGR00903 4 QAIWVTFSPVL-SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLD----- 75 (368)
T ss_pred hHHHHHHHhhH-HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHH-----
Confidence 33444444444 455778999999999999999999999999999999996 999887655444433322 2222
Q ss_pred cCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHH
Q 007201 139 LKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSN 218 (613)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp 218 (613)
..++..+++.|++.|++.+. .......++|++|+++ |++++++.+.+.++|..+++
T Consensus 76 -----------------~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~ 131 (368)
T TIGR00903 76 -----------------PFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFAL 131 (368)
T ss_pred -----------------hccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 01377899999999999986 4555666799999888 99999999999999999999
Q ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHHHHHc
Q 007201 219 TILGYFEDEGMWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 219 ~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
.+++++.+.+|||..|++.++..++..++.+..
T Consensus 132 ~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~ 164 (368)
T TIGR00903 132 AAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAA 164 (368)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988999999998776655554444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=203.86 Aligned_cols=158 Identities=14% Similarity=0.083 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 007201 62 FFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKP 141 (613)
Q Consensus 62 ~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~ 141 (613)
...+...++. +.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||++.++.++..++.+.+..+ +
T Consensus 29 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~---~---- 99 (406)
T PRK15402 29 NDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLA---Q---- 99 (406)
T ss_pred hhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHH---c----
Confidence 3334444443 4578999999999999999999999999999999996 99999999988888887777665 2
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHH
Q 007201 142 SGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTIL 221 (613)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~ 221 (613)
+.+.+++.|++.|++.+...+...+.+.|.+|+++ |.+..++.+....+|..++|.++
T Consensus 100 ----------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~ 157 (406)
T PRK15402 100 ----------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVG 157 (406)
T ss_pred ----------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778889999999998888888999999999887 88989988888889999999999
Q ss_pred HHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 222 GYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 222 g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
+++.+..+|++.|++.++..++..+..+.
T Consensus 158 ~~l~~~~~w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 158 AALIHVLPWRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred HHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 99988889999998877666655544433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-21 Score=211.49 Aligned_cols=156 Identities=11% Similarity=-0.014 Sum_probs=126.9
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCC
Q 007201 70 VLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGN 149 (613)
Q Consensus 70 ~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (613)
...+.+++|+++.+.+++.+.+.+++.++++++|+++||+ ||||++..+.++..++.+.+++...
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------- 116 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG-------------- 116 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh--------------
Confidence 4466789999999999999999999999999999999996 9999999988887777666554310
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc-
Q 007201 150 PCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEG- 228 (613)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~- 228 (613)
....+.+.+++.|++.|++.+...+....+++|++|+++ |+++++++..+.++|.++++.+..++.+..
T Consensus 117 ----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~ 186 (467)
T PRK09556 117 ----SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFF 186 (467)
T ss_pred ----cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence 001347889999999999999999999999999999998 999999999999999999998887765542
Q ss_pred --chhHHHHHHHHHHHHHHHHHHH
Q 007201 229 --MWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 229 --g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
+|+..|.+.++..++..+..++
T Consensus 187 ~~~~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 187 DGHVIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHH
Confidence 5888777766555444333333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=200.45 Aligned_cols=173 Identities=13% Similarity=0.125 Sum_probs=148.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007201 42 TGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA 121 (613)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~ 121 (613)
+.+|+.++.+....+......|.....+|.+ .+++|.++.+.++..+.+.++..+++++.|.++||+ ||||++..+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~ 93 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAV 93 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHH
Confidence 4467777767666666666666666666654 568999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
+..++.+++.++ .+.+.+++.|++.|++.|...+...++++|++|+++ |++
T Consensus 94 ~~~~~~~~~~~~-----------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~ 144 (394)
T PRK10213 94 LLTLSCLLVSFA-----------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPK 144 (394)
T ss_pred HHHHHHHHHHHH-----------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHH
Confidence 999888887765 237889999999999999999999999999999888 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 007201 202 FFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMAL 245 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~ 245 (613)
+.++...+.++|..+||.+++++.+.+||++.|++.++..++..
T Consensus 145 a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 145 ALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988999999988775544433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=204.47 Aligned_cols=167 Identities=14% Similarity=0.079 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 007201 52 LVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLS 131 (613)
Q Consensus 52 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~ 131 (613)
++...+.....|.+. .+..++.+++|+++.+.+++.+++.++..+++++.|+++||+ |||+++..+.++..++.+.+.
T Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~ 86 (377)
T TIGR00890 9 TVIMCFTSGYVYTWT-LLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYA 86 (377)
T ss_pred HHHHHHHhhHHhhhh-hHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHH
Confidence 333333333455443 455677889999999999999999999999999999999996 999999999999999988888
Q ss_pred hhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHh
Q 007201 132 VSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALN 211 (613)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~ 211 (613)
++ .+.+.++++|++.|++.+...+.....+.+++| ++ |+++.++...+.+
T Consensus 87 ~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~ 136 (377)
T TIGR00890 87 IA-----------------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYG 136 (377)
T ss_pred HH-----------------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcc
Confidence 76 237778899999999999888888888888887 45 8899999999999
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 212 LGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 212 iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
+|..+++.+.+.+.+..||++.|++.++..++..+..+.
T Consensus 137 ~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 175 (377)
T TIGR00890 137 LGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAF 175 (377)
T ss_pred hhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 999887777777767789999999887766555444433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-21 Score=207.29 Aligned_cols=166 Identities=12% Similarity=0.163 Sum_probs=142.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007201 43 GTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAI 122 (613)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l 122 (613)
.+++.+....+..+......+.. .+...++++++|.++.+.+++.+++.++..+++++.|+++||+ |||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~ 92 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence 33455666666666666666554 4455567789999999999999999999999999999999996 999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
..++.+.+.++ .+.+.++++|++.|++.|...+....++.|.+|+++ |+++
T Consensus 93 ~~~~~~~~~~~-----------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~ 143 (426)
T PRK12307 93 YSVGTGLSGLA-----------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKA 143 (426)
T ss_pred HHHHHHHHHHH-----------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHh
Confidence 99988888776 237789999999999999999999999999999988 9999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHH
Q 007201 203 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAG 239 (613)
Q Consensus 203 ~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~ 239 (613)
.++++.+.++|..+++.+.+.+.+..+|++.|++.+.
T Consensus 144 ~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 144 SAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 9999999999999999999998888899999987543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-21 Score=208.85 Aligned_cols=149 Identities=12% Similarity=0.086 Sum_probs=128.7
Q ss_pred HhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCC
Q 007201 76 VVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHS 155 (613)
Q Consensus 76 ~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (613)
+++++..+.+.+.+.+.+++.++++++|+++||+ |||+++.++.++..++.+++.++..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6789999999999999999999999999999996 9999999999888888777654411
Q ss_pred chhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc-chhHHH
Q 007201 156 SLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEG-MWALGF 234 (613)
Q Consensus 156 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~-g~~~~f 234 (613)
.+.+.+++.|+++|++.+...+....+++|++|+++ |+++.++.+.+.++|..++|.+.+++.+.+ ||+..|
T Consensus 129 -~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f 201 (465)
T TIGR00894 129 -GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIF 201 (465)
T ss_pred -cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeh
Confidence 125668899999999999999999999999999998 999999999999999999999999998874 999999
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 007201 235 WASAGSATMALILFLIGT 252 (613)
Q Consensus 235 ~~~~~~~~i~~~~~~~~~ 252 (613)
++.++..++..++++...
T Consensus 202 ~i~~~~~~~~~~~~~~~~ 219 (465)
T TIGR00894 202 YVFGIVGCAWSLLWFVFP 219 (465)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 988776655555444433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-21 Score=210.17 Aligned_cols=399 Identities=12% Similarity=0.112 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGL 127 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~ 127 (613)
++.+++..+...+........+| .+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS 81 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 44555555566555554544444 55678999999999999999999999999999999996 99999999999999988
Q ss_pred HHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHH
Q 007201 128 VSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFY 207 (613)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~ 207 (613)
+.+.++ + +.+.++++|++.|++.+...+...+++.|.+|+++ |+++.++++
T Consensus 82 ~~~~~~---~--------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~ 132 (485)
T TIGR00711 82 LLCGVA---P--------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWG 132 (485)
T ss_pred HHHhCc---C--------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHH
Confidence 888766 2 36778999999999999999999999999999888 999999999
Q ss_pred HHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccCCc
Q 007201 208 LALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDD 287 (613)
Q Consensus 208 ~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (613)
....+|..+||.+++++.+.++|++.|++.+...++..+......++.++++.. .. +..............
T Consensus 133 ~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-d~~g~~l~~~~~~~~------ 203 (485)
T TIGR00711 133 LTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASE--NF-DFLGLLLLSVGLGSL------ 203 (485)
T ss_pred HHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccC--CC-cHHHHHHHHHHHHHH------
Confidence 999999999999999999999999999987766655555444433332111111 11 111000000000000
Q ss_pred ccchhhhcccccccccCCcccccccccchhhh-------hhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHH
Q 007201 288 HDLLFYERDGIKQTSQNGARNILHTQGFKFLD-------KAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKC 360 (613)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 360 (613)
.+... ..+ .............. ...+..+.. .+++..+++ ..++++.
T Consensus 204 ----~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-----~~~~~~~ 257 (485)
T TIGR00711 204 ----LYGLS-EGP-----ERGWFDSNEILILSITGLVAIIAFVVWELT-----------DDNPLVDLR-----LFKYRNF 257 (485)
T ss_pred ----HHHHh-hCC-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHc-----------CCCCccCHH-----HHcCCCh
Confidence 00000 000 00000000000000 000000000 000001111 1111111
Q ss_pred HHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCC
Q 007201 361 ILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRG 440 (613)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~ 440 (613)
....+..+.....++......+.++.. ..+.+ ....+.......+..+++.++.+++ .+|.++|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~g~s----~~~~g~~~~~~~~~~~~~~~~~g~l----~~r~~~~----- 321 (485)
T TIGR00711 258 TIGCVYMSLLGLGLYGSFYLLPLYLQQ---VLGYT----ALQAGLHILPVGLAPMLSSPIAGRM----GDKIDPR----- 321 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCC----HHHHHHHHHHHHHHHHHHHHHHHHH----HhhcCcH-----
Confidence 111222222222222222222211100 00111 1123344455556666777777765 4554433
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCch
Q 007201 441 FTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDG 520 (613)
Q Consensus 441 ~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~ 520 (613)
+.+.+|..+.+++++++.+.. ....+.+......++.|++.+...+.......+..|++
T Consensus 322 ----~~~~~g~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~ 380 (485)
T TIGR00711 322 ----KLVTIGLILYAVGFYWRAFTF-----------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPH 380 (485)
T ss_pred ----HHHHHHHHHHHHHHHHHhccC-----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 256667777777776665221 11234445566678889999888877778888889999
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 007201 521 LKSFGSALCMTSISLGNYVSSLLVTIVMK 549 (613)
Q Consensus 521 ~rg~~~g~~~~~~~lg~~i~~~l~~~i~~ 549 (613)
.+|+++|+.++.+.+|+.+|+.+.+.+..
T Consensus 381 ~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 381 KIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=201.61 Aligned_cols=173 Identities=16% Similarity=0.196 Sum_probs=147.6
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 007201 41 RTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQ 120 (613)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~ 120 (613)
.+.+|+.+...++..+...+..+.+....+ .+++++|.++.+.+++.+++.++..++.++.|+++||+ |||++++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~ 84 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSI 84 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 345677778888888888887776665555 56788999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhh
Q 007201 121 AIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKI 200 (613)
Q Consensus 121 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~ 200 (613)
++..++.+++.++ + +.+.+++.|++.|++.+...+...+++.|++|+++ |+
T Consensus 85 ~~~~~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~ 135 (405)
T TIGR00891 85 VLFSAGTLACGFA---P--------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RN 135 (405)
T ss_pred HHHHHHHHHHHHh---c--------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hh
Confidence 8888888877765 2 36778899999999999999999999999999988 99
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhccccc--hhHHHHHHHHHHHHH
Q 007201 201 AFFSYFYLALNLGSLFSNTILGYFEDEGM--WALGFWASAGSATMA 244 (613)
Q Consensus 201 ~~~~~~~~~~~iG~~~gp~l~g~l~~~~g--~~~~f~~~~~~~~i~ 244 (613)
++.++.+.+.++|..+++.+++.+.+..+ |+..|++.++..++.
T Consensus 136 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 136 KASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877665 999888765444433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=205.07 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=123.6
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCC
Q 007201 68 NLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDE 147 (613)
Q Consensus 68 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (613)
....|+.++ |+++.+.+++.+.+.++..++++++|+++||+ |||++++++.++..++.++++++. .
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~---~--------- 115 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVP---W--------- 115 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhh---c---------
Confidence 344577777 99999999999999999999999999999996 999999999998888888777651 1
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHH-HHHHHHHhcc
Q 007201 148 GNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLF-SNTILGYFED 226 (613)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~-gp~l~g~l~~ 226 (613)
...+.+.+++.|++.|++.|...+.....+.|++|+++ |++++++++.+.++|+.+ +|++...+..
T Consensus 116 -------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 182 (452)
T PRK11273 116 -------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAW 182 (452)
T ss_pred -------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 01236677888999999999888888889999999988 999999999999998754 5554333333
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Q 007201 227 EGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 227 ~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
..+|++.|++.++..++..++.++
T Consensus 183 ~~gw~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 183 FNDWHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHH
Confidence 458999998877655554443333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-20 Score=198.14 Aligned_cols=169 Identities=16% Similarity=0.044 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH-HHHHHHHHHHH
Q 007201 52 LVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIF-QAIFVIGLVSL 130 (613)
Q Consensus 52 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~-~~l~~~~~~~~ 130 (613)
.+..++...+.......++.|+++++|.++.+.+++.+.+.+...+.+++.|+++||+ ||||.++.. ..+..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 3446677777778888899999999999999999999999999999999999999996 999876654 44444555555
Q ss_pred HhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH--HHHHHH
Q 007201 131 SVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF--FSYFYL 208 (613)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~--~~~~~~ 208 (613)
.++ + +++.+++.+++.+.+.+...|...++..|..|+++ |... .+..+.
T Consensus 82 ~~~---~--------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~ 132 (375)
T TIGR00899 82 AWN---R--------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRA 132 (375)
T ss_pred Hhc---c--------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHH
Confidence 554 2 36667777888877777777888888888877655 5443 577778
Q ss_pred HHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 209 ALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 209 ~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
..++|..+||.+++++.+..||++.|++.++..++..+..++
T Consensus 133 ~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 133 QISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999988889999999888766555554444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-21 Score=210.31 Aligned_cols=149 Identities=13% Similarity=0.056 Sum_probs=124.1
Q ss_pred HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCC
Q 007201 72 FLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPC 151 (613)
Q Consensus 72 yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (613)
.+.+++|.+..+.+++.+.+.+...++.+++|+++||+ |||++++.+.++..++.++++++.
T Consensus 44 ~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~----------------- 105 (455)
T TIGR00892 44 ELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS----------------- 105 (455)
T ss_pred HHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh-----------------
Confidence 45678999999999999999999999999999999996 999999999988888888877762
Q ss_pred CCCCchhHHHHH-HHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccch
Q 007201 152 GSHSSLHMALFY-LSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMW 230 (613)
Q Consensus 152 ~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~ 230 (613)
+.+.++ ..|++.|++.+...+....++.++++ ++ |+++.++.+.+.++|..++|.+++++.+.+||
T Consensus 106 ------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gw 172 (455)
T TIGR00892 106 ------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGW 172 (455)
T ss_pred ------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCh
Confidence 244454 34678899988766667788889885 56 99999999999999999999999999888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHc
Q 007201 231 ALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 231 ~~~f~~~~~~~~i~~~~~~~~ 251 (613)
++.|++.+++.+++.+..++.
T Consensus 173 r~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 173 RGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999887766555544443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=205.22 Aligned_cols=167 Identities=24% Similarity=0.361 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 007201 52 LVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLS 131 (613)
Q Consensus 52 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~ 131 (613)
++..+............++.++.+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++..++.+.+.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 4555666666666667777688889999999999999999999999999999999996 999999999998888855555
Q ss_pred hhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHh
Q 007201 132 VSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALN 211 (613)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~ 211 (613)
++ + +.+.++++|++.|++.+...+...+++.|.+|+++ |++.+++.+.+.+
T Consensus 81 ~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~ 131 (352)
T PF07690_consen 81 FA---S--------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFS 131 (352)
T ss_dssp HH---C--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHH
T ss_pred hh---h--------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhh
Confidence 54 2 24579999999999999999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q 007201 212 LGSLFSNTILGYFEDEGMWALGFWASAGSATMALILF 248 (613)
Q Consensus 212 iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~ 248 (613)
+|..++|.+++++.+..+|++.|++.++..++..++.
T Consensus 132 ~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 132 LGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred hhhhcccchhhhhhhccccccccccccchhhhhhhhH
Confidence 9999999999999988899999999888777666543
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-20 Score=201.06 Aligned_cols=173 Identities=17% Similarity=0.137 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CChhhHHHHHHHH---HHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVG---QNNADAANNVSKW---TGTVYIFSLLGAFLSDSYWGRYKTCAIFQA 121 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg---~~~~~~~~~~~~~---~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~ 121 (613)
++...+..+++.+..+. .+....++.++++ .+..+.+...+.+ .++..++++++|+++||+ ||||++.++.+
T Consensus 24 ~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~ 101 (432)
T PRK10406 24 IVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVC 101 (432)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 34444455566666544 4566667888874 4555444444444 444559999999999996 99999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
++.++.++++++ |++. .....+...+++.|+++|++.|+..+...++++|++|+++ |++
T Consensus 102 ~~~~~~~~~~~~---~~~~------------~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~ 160 (432)
T PRK10406 102 MMCFGSLVIACL---PGYE------------TIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGF 160 (432)
T ss_pred HHHHHHHHHhhc---CCch------------hHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccH
Confidence 999999988876 2200 0001124568899999999999999999999999999988 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhc--------cccchhHHHHHHHHHHHH
Q 007201 202 FFSYFYLALNLGSLFSNTILGYFE--------DEGMWALGFWASAGSATM 243 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l~--------~~~g~~~~f~~~~~~~~i 243 (613)
+.++.+.+.+.|..+++.+...+. ..+|||.+|++.++..++
T Consensus 161 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 161 YASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 999988888888888887655543 257999999887665443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-19 Score=190.55 Aligned_cols=380 Identities=16% Similarity=0.132 Sum_probs=263.0
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 007201 41 RTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQ 120 (613)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~ 120 (613)
.+..+..++.+.+..|.....-|....-+| -+.+++|.+..++|+.++.+.++..++.|+-..+.||+ .||++++...
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp-~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l 85 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVPVGLLP-PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLL 85 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHhchH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHH
Confidence 345567788888888887777777766666 45679999999999999999999999999999999995 9999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhh
Q 007201 121 AIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKI 200 (613)
Q Consensus 121 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~ 200 (613)
.+++++.++++++ |+ ++.+.++|++.++..|..++...+..++..|+++ |+
T Consensus 86 ~lFi~~n~l~alA---p~--------------------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~ 136 (394)
T COG2814 86 ALFIVSNLLSALA---PS--------------------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RG 136 (394)
T ss_pred HHHHHHHHHHHHh---cc--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hh
Confidence 9999999999998 44 8999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCC-cccccCCCCChhhHHHHHHHHHHhhc
Q 007201 201 AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTP-RYRHFKPTGNPLSRICQVVVAATRKW 279 (613)
Q Consensus 201 ~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (613)
++.++...+..+...+|..++.++.+.+|||..|+..+.+.+++.+..+...| +...+++.. +..+.
T Consensus 137 ~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~-~~~~~----------- 204 (394)
T COG2814 137 RALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPG-PLRTL----------- 204 (394)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCc-chhHH-----------
Confidence 99999999999999999999999999999999999998888877777766655 110000000 00000
Q ss_pred cccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHH
Q 007201 280 KVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVK 359 (613)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 359 (613)
++ ..++.+
T Consensus 205 -------------------------------------------------------------------~~-----~l~~p~ 212 (394)
T COG2814 205 -------------------------------------------------------------------LR-----LLRRPG 212 (394)
T ss_pred -------------------------------------------------------------------HH-----HhcCch
Confidence 00 000011
Q ss_pred HHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCC
Q 007201 360 CILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTR 439 (613)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~ 439 (613)
....+....+.....+..|.+....+.. ..+++. -..+++.....+..++...+.+++ .||
T Consensus 213 v~~~l~~t~l~~~g~F~~ftYi~P~L~~-v~g~s~------~~vs~~Ll~~Gv~~~~Gn~~gGrl----~dr-------- 273 (394)
T COG2814 213 VLLGLLATFLFMTGHFALYTYIRPFLES-VAGFSV------SAVSLVLLAFGIAGFIGNLLGGRL----ADR-------- 273 (394)
T ss_pred HHHHHHHHHHHHcchhhhHHhHHHHHHH-ccCCCH------hHHHHHHHHHHHHHHHHHHHHhhh----ccc--------
Confidence 1112222223333333333333221111 111111 123455555666667777777766 344
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCc
Q 007201 440 GFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPD 519 (613)
Q Consensus 440 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~ 519 (613)
...+.+.....+.++.++.+.+.. .+.+..+...++.+++.....+..+....+.+ +
T Consensus 274 --~~~~~l~~~~~l~a~~~l~l~~~~--------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p 330 (394)
T COG2814 274 --GPRRALIAALLLLALALLALTFTG--------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-P 330 (394)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHhc--------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-C
Confidence 122355566666667766665442 12233344444455555444444444444433 4
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 007201 520 GLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARW 590 (613)
Q Consensus 520 ~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~ 590 (613)
+.++.+++++....++|..+|..+.+.+.+. .++....++.+++.+++++..+...++
T Consensus 331 ~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-------------~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 331 DAADLAGSLNVAAFNLGIALGAALGGLVLDA-------------LGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7799999999999999999999999988752 245667788788777777666554444
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-20 Score=195.54 Aligned_cols=176 Identities=15% Similarity=0.086 Sum_probs=145.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
++.++.+.+..+............+| ++.+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA 81 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence 34455555555555555555555555 45678999999999999999999999999999999996 99999999998888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
++.+.+.+. + +.+.+++.|++.|++.+...+...+++.|.+|+++ |++.++
T Consensus 82 ~~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 132 (385)
T TIGR00710 82 LSSLGLALS---N--------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYS 132 (385)
T ss_pred HHHHHHHHH---c--------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHH
Confidence 888877765 2 36778889999999999999999999999999888 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHc
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
+.+...++|..++|.+++++.+..+|+..|++.++..++..+..+..
T Consensus 133 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 133 ILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888899999988776665555544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-20 Score=192.89 Aligned_cols=347 Identities=21% Similarity=0.273 Sum_probs=250.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 007201 50 LILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVS 129 (613)
Q Consensus 50 ~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~ 129 (613)
.+.+..+......+......+.|.+ ++|.++.+.+++.+...++..++.++.|+++||+ ||||.+..+.++..++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence 4556667777777777787887764 6799999999999999999999999999999996 9999999999999888888
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHH
Q 007201 130 LSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLA 209 (613)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~ 209 (613)
+.+. .+.+.+++.+++.|++.+...+...+++.|.+|+++ |++.+++.+..
T Consensus 81 ~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 131 (352)
T cd06174 81 LAFA-----------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAG 131 (352)
T ss_pred HHHh-----------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHH
Confidence 7765 236778899999999999999999999999999988 99999999999
Q ss_pred HhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccCCccc
Q 007201 210 LNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHD 289 (613)
Q Consensus 210 ~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (613)
.++|..++|.+++++.+..+|+..+++.++..++..+......+ .
T Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~---------------------- 176 (352)
T cd06174 132 FGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR-------------L---------------------- 176 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------------H----------------------
Confidence 99999999999999998888999998887766655554433210 0
Q ss_pred chhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHHHHHH
Q 007201 290 LLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWL 369 (613)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 369 (613)
++ ...+..+.
T Consensus 177 --~~--------------------------------------------------------------------~~~~~~~~ 186 (352)
T cd06174 177 --LL--------------------------------------------------------------------LLALAFFL 186 (352)
T ss_pred --HH--------------------------------------------------------------------HHHHHHHH
Confidence 00 00000001
Q ss_pred HhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHH
Q 007201 370 CTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGV 449 (613)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~ 449 (613)
....+.......+... .+..+.+ ....+.+.....+..++..++.+++ .+|.++|+ . .+..
T Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~-----~---~~~~ 247 (352)
T cd06174 187 LSFGYYGLLTYLPLYL-QEVLGLS------AAEAGLLLSLFGLGGILGALLGGLL----SDRLGRRR-----L---LLLI 247 (352)
T ss_pred HHhHHHHHHHHHHHHH-HHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhh-----H---HHHH
Confidence 1111111111111000 0000001 1123445555666667777777765 45554332 1 4566
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHH
Q 007201 450 GLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALC 529 (613)
Q Consensus 450 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~ 529 (613)
+..+..++++...... +.+......++.+++.+...+...+++.+..|++.|++.+|+.
T Consensus 248 ~~~~~~i~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (352)
T cd06174 248 GLLLAALGLLLLALAP---------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLF 306 (352)
T ss_pred HHHHHHHHHHHHHHhc---------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHH
Confidence 7777777766665431 2456677888899999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 007201 530 MTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYI 585 (613)
Q Consensus 530 ~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~ 585 (613)
+....+++.+++.+.+.+.+. .++...|.+.+++.+++.+...
T Consensus 307 ~~~~~~~~~i~~~i~g~l~~~-------------~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 307 NTFGSLGGALGPLLAGLLLDT-------------GGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-------------cCcchHHHHHHHHHHHHHHHhe
Confidence 999999999999998876531 1234567777777777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-20 Score=196.74 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=136.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
.|.++.+++..++.......+.+.+|.|+. ++|.++.+++++.+.+.++..+++++.|+++||+ ||||++..+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 467888888888988888888888998876 6899999999999999999999999999999996 99999999999988
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
++...+.++ + +.+.++++|++.|++.+...+...+.+.+..++++ |+++++
T Consensus 83 ~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 133 (381)
T PRK03633 83 AGCAGLGLM---V--------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLA 133 (381)
T ss_pred HHHHHHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence 888877776 2 37778899999999999888888888888888777 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccch
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGMW 230 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g~ 230 (613)
+++.+.++|..+||.+++.+.+...+
T Consensus 134 ~~~~~~~~g~~~g~~~~~~l~~~~~~ 159 (381)
T PRK03633 134 AYMMVYYLGTVLGQLLVSKVSTELMS 159 (381)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999988765433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-20 Score=196.84 Aligned_cols=173 Identities=16% Similarity=0.128 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+.++.+....+......+...+.+|. +.+++|.+..+.++..+.+.++..+++++.|+++||+ |||+++..+.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 56677777777777777777777765 4678999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
+.+++.++ + +.+.+++.|++.|++.+...+....++.|++|+++ |++++++
T Consensus 81 ~~~l~~~~---~--------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 131 (382)
T PRK10091 81 GNAMFTLS---S--------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAG 131 (382)
T ss_pred HHHHHHHh---C--------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHH
Confidence 88888776 2 37889999999999999888888889999998877 8899999
Q ss_pred HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 007201 206 FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFL 249 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~ 249 (613)
+..+..+|..++|.+++++.+..+|++.|++.++..++..+..+
T Consensus 132 ~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 132 MVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred HHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888999999988776555444333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-19 Score=196.88 Aligned_cols=175 Identities=13% Similarity=0.061 Sum_probs=128.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChhhHHHHH-----HHHHHHHHHHHHHHHHHhhhccCchHHH
Q 007201 44 TWIAGILILVNQGLATLAFFGVGVNLVLFLTRVV--GQNNADAANNV-----SKWTGTVYIFSLLGAFLSDSYWGRYKTC 116 (613)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~l--g~~~~~~~~~~-----~~~~~~~~~~~~~~G~lsDr~~Grr~~i 116 (613)
++|.++..++..+++.+....+....+.++.+++ +.++.+ +++. ++..++..++.++.|+++||+ |||+++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l 97 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHH
Confidence 3456666666777776666555545555666555 677664 4443 233445667788889999996 999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCcccc
Q 007201 117 AIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEG 196 (613)
Q Consensus 117 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~ 196 (613)
..+.+++.++.++++++ |++. ...-.....+++.|+++|++.|+..+....++.|++|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~---~~~~------------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~---- 158 (438)
T PRK09952 98 MLTVWMMGIATALIGLL---PSFS------------TIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK---- 158 (438)
T ss_pred HHHHHHHHHHHHHHhcC---CcHH------------HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC----
Confidence 99999999999988887 3200 0000012358889999999999999999999999999988
Q ss_pred chhhhHHHHHHHHHhHHHHHHHHHHHHhc--------cccchhHHHHHHHHHH
Q 007201 197 HSKIAFFSYFYLALNLGSLFSNTILGYFE--------DEGMWALGFWASAGSA 241 (613)
Q Consensus 197 ~~r~~~~~~~~~~~~iG~~~gp~l~g~l~--------~~~g~~~~f~~~~~~~ 241 (613)
|++..+..+.+..+|..++..+..++. ..+|||.+|++.++..
T Consensus 159 --rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~ 209 (438)
T PRK09952 159 --KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV 209 (438)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence 999999988899999988877766654 2479999998776553
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-19 Score=193.83 Aligned_cols=171 Identities=13% Similarity=0.108 Sum_probs=139.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007201 43 GTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAI 122 (613)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l 122 (613)
+-||.+....++.++.....+....+++.++ +++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence 4457788888888888888877788888888 57899999999999999999999999999999996 999999999988
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
..++.+++..... . ..+.+.+++.|++.|+|.+...+...+.+.+.+|+++ |+++
T Consensus 88 ~~~~~~~~~~~~~-~------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~ 142 (402)
T TIGR00897 88 WCVGHAAFIVFGL-G------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSA 142 (402)
T ss_pred HHHHHHHHHHHhc-c------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHH
Confidence 8887665432110 0 1136667788999999888777777888889999888 9999
Q ss_pred HHHHHHHHhHHH-HHHHHHHHHhccccchhHHHHHHHHH
Q 007201 203 FSYFYLALNLGS-LFSNTILGYFEDEGMWALGFWASAGS 240 (613)
Q Consensus 203 ~~~~~~~~~iG~-~~gp~l~g~l~~~~g~~~~f~~~~~~ 240 (613)
.++++.+.++|. .++|.+++++.+..||+..++.....
T Consensus 143 ~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 143 VGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 999999999996 58999999988888876665544433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=195.13 Aligned_cols=178 Identities=17% Similarity=0.157 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNL---VLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l---~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
-+-++...++...++|...-++ .+++.++.++|.+|.|.+.+.+.+.+-++.++.|.++||. +.|+.+..++++..
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsa 105 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHH
Confidence 3445556666777777776443 4688889999999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
+..+++++.. +.+.+.+..++.|..+|.-+|.+...++.+||.++ ||+..+
T Consensus 106 i~nil~Gfs~-----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~s 156 (448)
T COG2271 106 IVNILFGFSP-----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWS 156 (448)
T ss_pred HHHHHHhhhh-----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEE
Confidence 9999999872 37778888889999999999999999999999999 999999
Q ss_pred HHHHHHhHHHHHHHHHH--HHhccccchhHHHHHHHHHHHHHHHHHHHcCCcc
Q 007201 205 YFYLALNLGSLFSNTIL--GYFEDEGMWALGFWASAGSATMALILFLIGTPRY 255 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~--g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~ 255 (613)
+.+.+-|+|+++.|++. +++..+++|+..|++++++.++..++.+...++.
T Consensus 157 iWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 157 IWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred EehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999 9999888999999999988776666655554443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-20 Score=197.75 Aligned_cols=175 Identities=15% Similarity=0.185 Sum_probs=141.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007201 44 TWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIF 123 (613)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~ 123 (613)
.++.+...++..+......+... ....++.+++|.++.+.+++.+...++..++.++.|+++||+ |||+++..+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~ 92 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMG-FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLF 92 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHH
Confidence 34445555555555555544444 444456678999999999999999999999999999999996 9999999998888
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
.++.+++.+. + +.+.+++.+++.|++.+...+...++++|.+|+++ |++++
T Consensus 93 ~~~~~~~~~~---~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~ 143 (398)
T TIGR00895 93 SVFTLLCALA---T--------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAV 143 (398)
T ss_pred HHHHHHHHHc---c--------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhH
Confidence 8887777665 1 36678889999999999999999999999999888 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFL 249 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~ 249 (613)
++.+.+.++|..++|.+++++.+..||+..|++.++...+..+...
T Consensus 144 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 189 (398)
T TIGR00895 144 GLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM 189 (398)
T ss_pred hhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHH
Confidence 9999999999999999999998888999998887644444433333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-19 Score=193.18 Aligned_cols=177 Identities=12% Similarity=0.096 Sum_probs=124.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH-HHHHHHHHHHHhhhccCchHHHHHH-HHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGT-VYIFSLLGAFLSDSYWGRYKTCAIF-QAI 122 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~G~lsDr~~Grr~~i~~~-~~l 122 (613)
.+..+..++..++.+.....+...++.|+++++|.++++.|++.+...+. ..+.++++|+ +||+ ||||.+++. .++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~ 91 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLL 91 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHH
Confidence 34556677778888888888889999999999999999999998776554 4455555566 9996 999876544 444
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
..++..++.++ .+.+.+++.+.+.+...+...+....+..|..+++. |..+..
T Consensus 92 ~~~~~~~~~~~-----------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (393)
T PRK15011 92 GVLACTLFAWN-----------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG----REAVMF 144 (393)
T ss_pred HHHHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc----chHHHH
Confidence 44555555554 124544444444443334566777777777665443 002344
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 203 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 203 ~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
.++.+.+.++|.++||.+++++.+.+||+..|++.++..++..+..+.
T Consensus 145 ~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 145 SSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 578888999999999999999998899999998887665555444443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=202.27 Aligned_cols=378 Identities=14% Similarity=0.178 Sum_probs=254.4
Q ss_pred HhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCC
Q 007201 76 VVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHS 155 (613)
Q Consensus 76 ~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (613)
+++++..+.+++.+.+..++.++++++|+++||+ |-|+++..+.++..+++++..++..
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-------------------- 125 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-------------------- 125 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 5788999999999999999999999999999996 9999999999999999999988743
Q ss_pred chhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccc-cchhHHH
Q 007201 156 SLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDE-GMWALGF 234 (613)
Q Consensus 156 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~-~g~~~~f 234 (613)
.+.+.+++.|+++|++.|...|+...+.+++.|+++ |++..++.+.+..+|.+++-.++|++.+. .||+.+|
T Consensus 126 -~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sif 198 (466)
T KOG2532|consen 126 -IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIF 198 (466)
T ss_pred -hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHH
Confidence 234568999999999999999999999999999999 99999999999999999999999999988 8999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccCCcccchhhhcccccccccCCccccccccc
Q 007201 235 WASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQG 314 (613)
Q Consensus 235 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (613)
++.+...++..++++....+.+.++|.-+. .
T Consensus 199 Y~~g~~g~i~~~~w~~~~~d~P~~h~~is~-----------------------~-------------------------- 229 (466)
T KOG2532|consen 199 YVFGIVGLIWFILWFLFYSDSPSKHPNISE-----------------------K-------------------------- 229 (466)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCCCH-----------------------H--------------------------
Confidence 999988877777766655433222221110 0
Q ss_pred chhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehhhccc
Q 007201 315 FKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKT 394 (613)
Q Consensus 315 ~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (613)
++..|...+... ...++.+.||+... .+...+...+..+..+-.++....++++++-. ..+++.
T Consensus 230 ----El~~I~~~k~~~-------~~~~~~~vP~~~i~----ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~-VL~f~v 293 (466)
T KOG2532|consen 230 ----ELKYIEKGKSEA-------HVKKKPPVPYKAIL----TSPPVWAIWISAFGGNWGFYLLLTYLPTYLKE-VLGFDV 293 (466)
T ss_pred ----HHHHHHhccccc-------ccCCCCCCCHHHHH----cCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HhCCCh
Confidence 011111111100 00111457886321 12222333344445555566666666654321 122222
Q ss_pred CccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHH--HHHHHHHHHHHHHHHHHHhhhhhhc
Q 007201 395 NISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRM--GVGLVIAIMAMISAGVVEIFRLKYS 472 (613)
Q Consensus 395 ~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~--~~G~~l~~~~~~~~~~~~~~~~~~~ 472 (613)
+ .++++.++..+...+...+.+.+.|++..| +-.. +..+++ .++....+++++.+++....
T Consensus 294 ~------~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~-----t~~rkifn~i~~~~~ai~l~~l~~~~~~----- 356 (466)
T KOG2532|consen 294 R------ETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSE-----TTVRKIFNTIAFGGPAVFLLVLAFTSDE----- 356 (466)
T ss_pred h------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCch-----HhHHHHHHhHHHHHHHHHHHeeeecCCC-----
Confidence 2 467777888888888888888887776665 2222 344455 35555555556555544210
Q ss_pred cccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcC
Q 007201 473 IKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKIST 552 (613)
Q Consensus 473 ~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~ 552 (613)
........+.++..+.|+.. ++.+.-..+.+ +++.+..+|+.+....+++.++|++++.+.+..+
T Consensus 357 ----------~~~~a~~~l~~~~~~~g~~~----~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t 421 (466)
T KOG2532|consen 357 ----------HRLLAVILLTIAIGLSGFNI----SGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNT 421 (466)
T ss_pred ----------cchHHHHHHHHHHHHcccch----hhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCC
Confidence 00112222222222222222 33222222224 4779999999999999999999999987764111
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 007201 553 RPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICA 588 (613)
Q Consensus 553 ~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~ 588 (613)
..+| ..+|++.+++.+++.+++.++.
T Consensus 422 ~~eW----------~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 422 REEW----------RIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHH----------HHHHHHHHHHHHHhchheeEee
Confidence 1334 5789999999999998887764
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-20 Score=200.09 Aligned_cols=394 Identities=15% Similarity=0.095 Sum_probs=221.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+.++.+.+..++...+++.+.++++.|+++++|+++.+.+.+.+++.+...+++++.|+++||+ ||||++.++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 4566666777777787888899999999999999999999999999999999999999999996 999999887665544
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
+...+......+. . ......+..+.++..+...+.....+.++.+... +.++..++.
T Consensus 89 ~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~g~ 145 (420)
T PRK09528 89 LFGPFFIYVFAPL------------------L-QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGFEYGR 145 (420)
T ss_pred HHHHHHHHHHHHH------------------H-HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhccccchh
Confidence 4322211100000 0 0001111222223223222222222333322111 115677788
Q ss_pred HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccC
Q 007201 206 FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISD 285 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (613)
.+...++|..++|.+++++.+ .+|+..|++.++..++..+..+..+++.++++...+
T Consensus 146 ~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 202 (420)
T PRK09528 146 ARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVAN---------------------- 202 (420)
T ss_pred hHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhcc----------------------
Confidence 888889999999999998875 589999988776665555554443322111000000
Q ss_pred CcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHH
Q 007201 286 DDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLL 365 (613)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 365 (613)
++. + ++ +...+.+... ..++++.....+
T Consensus 203 -------------~~~--~--~~----~~~~~~~~~~-------------------------------~l~~~~~~~l~l 230 (420)
T PRK09528 203 -------------ALG--A--NA----SAVSLKDALA-------------------------------LLKLPKFWFLVL 230 (420)
T ss_pred -------------chh--c--cc----ccccHHHHHH-------------------------------HccCCCeEeehH
Confidence 000 0 00 0000000000 000000000011
Q ss_pred HHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhH
Q 007201 366 PIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQ 445 (613)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~ 445 (613)
........+.....+.+.++.... .+.... ....+.+..++.+...+..++.+++ .+|+++|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l----~dr~g~~~--------- 293 (420)
T PRK09528 231 YVIGVACFYDVFDQQFPNFFASFF--ATPEQG--TRVFGYLNSFQVFLEALIMFFAPFI----INRIGAKN--------- 293 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hccCcc--hHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCcch---------
Confidence 111111222222222222111100 000100 0012334444455555666666655 56665543
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHH
Q 007201 446 RMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFG 525 (613)
Q Consensus 446 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~ 525 (613)
.+..+.++.+++++++++.. +.++++...++.+++.....+...+++.+..|++.+++.
T Consensus 294 ~~~~~~~l~~~~~~l~~~~~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~ 352 (420)
T PRK09528 294 ALLLAGTIMAVRIIGSGFAT---------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATI 352 (420)
T ss_pred hhHHHHHHHHHHHHHHHhcc---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeee
Confidence 45666666666666655331 334555667777888777777777888999999999988
Q ss_pred HHH-HHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 007201 526 SAL-CMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICAR 589 (613)
Q Consensus 526 ~g~-~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~ 589 (613)
.++ ++....+|..+++.+.+.+.+.. +++..|.+.+++.++..++.+...+
T Consensus 353 ~~~~~~~~~~lg~~ig~~~~G~l~~~~-------------G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 353 YLVGFQFAKQLGAVFLSTLAGNLYDSI-------------GFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHhh-------------CchHHHHHHHHHHHHHHHHHHHHhc
Confidence 766 67778899999999998776532 2456788777777666655554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-19 Score=192.34 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.++.+++.+++..+........++.. .+++|.++.+.+++.+.+.+.+.++.+++|+++||+ ||||++.++.++..+
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence 456677777787777655554445544 578899999999999999999999999999999996 999999999998888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
+.+.+.+. + + .++.|+++|++.+...|+..+++.|.+|+++ |+++.++
T Consensus 81 ~~~~~~~~---~--------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~ 128 (393)
T PRK11195 81 GCLLMLFG---I--------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGW 128 (393)
T ss_pred HHHHHHHH---H--------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence 87776554 1 1 2677899999999999999999999999988 9999999
Q ss_pred HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q 007201 206 FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMA 244 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~ 244 (613)
.....++|..+||.++|++.+. .|+..+.+.+...+++
T Consensus 129 ~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 129 MEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999874 4766666555444433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-19 Score=190.94 Aligned_cols=174 Identities=11% Similarity=0.118 Sum_probs=143.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007201 43 GTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAI 122 (613)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l 122 (613)
+++|..+..++..++.....+.+...+|. +.+++|+|..+.+++.+.+.++..++++++|+++||+ ||||++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 34566777777777776666666555655 5678999999999999999999999999999999996 999999999988
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
..++.+++.++ + +.+.+++.|++.|++.|...+...+++.|.+|+++ |++.
T Consensus 82 ~~i~~~l~~~~---~--------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~ 132 (394)
T PRK03699 82 MILAVAGLMFS---H--------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSR 132 (394)
T ss_pred HHHHHHHHHHc---c--------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHH
Confidence 88888877765 2 36778899999999999888889999999998887 9999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHH
Q 007201 203 FSYFYLALNLGSLFSNTILGYFE-DEGMWALGFWASAGSATMALIL 247 (613)
Q Consensus 203 ~~~~~~~~~iG~~~gp~l~g~l~-~~~g~~~~f~~~~~~~~i~~~~ 247 (613)
.+..+...++|+.++|.+.+++. +..||++.|.+.++..++..+.
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 133 LLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 99888888999999999988765 4579999998877655544433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=199.88 Aligned_cols=166 Identities=15% Similarity=0.192 Sum_probs=142.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007201 43 GTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAI 122 (613)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l 122 (613)
.+++.+..+++..+...+..+.....+ .++.+++|.++.+.++..+.+.++..++.+++|+++||+ |||+++..+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 455666777777777777665555444 456788999999999999999999999999999999996 999999999988
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
..++.+.+.+. .+.+.+++.|++.|++.++..+....++.|.+|+++ |+++
T Consensus 95 ~~~~~~~~~~~-----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~ 145 (496)
T PRK03893 95 FSVGTLACGFA-----------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKA 145 (496)
T ss_pred HHHHHHHHHHH-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence 88888887776 236778899999999999999999999999999888 9999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHH
Q 007201 203 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAG 239 (613)
Q Consensus 203 ~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~ 239 (613)
.++++.+.++|..++|.+.+++.+.++|++.|++.+.
T Consensus 146 ~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~ 182 (496)
T PRK03893 146 SGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL 182 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9999999999999999999999988999998886543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-19 Score=190.55 Aligned_cols=172 Identities=13% Similarity=0.090 Sum_probs=141.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007201 44 TWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIF 123 (613)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~ 123 (613)
.+|..+++.+..++.....+.....+|. +.+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 4566666666666666666555555554 4578999999999999999999999999999999996 9999999998888
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
.++.+.+.+. + +.+.+++.|++.|++.+...+....+..|.++.++ |+++.
T Consensus 84 ~~~~~~~~~~---~--------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 134 (394)
T PRK11652 84 ILGTLVALFA---H--------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHAN 134 (394)
T ss_pred HHHHHHHHHH---c--------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHH
Confidence 8888777665 2 36778899999999988877888888889888777 88999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALI 246 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~ 246 (613)
++++.+..++..++|.+++++.+..||+..|++.++..++..+
T Consensus 135 ~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 135 SLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888999999887665544433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-19 Score=199.41 Aligned_cols=146 Identities=15% Similarity=0.163 Sum_probs=126.0
Q ss_pred HHHHHhCCC---hhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCC
Q 007201 72 FLTRVVGQN---NADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEG 148 (613)
Q Consensus 72 yl~~~lg~~---~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (613)
-+.+++|++ +.+.++..+++.++..++.++.|+++||+ |||++++++.++..++.++.+++ +
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~---~----------- 178 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS---P----------- 178 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc---c-----------
Confidence 345678998 89999999999999999999999999996 99999999999888888887776 2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc
Q 007201 149 NPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEG 228 (613)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~ 228 (613)
+.+.+++.|++.|++.++..+...+++.|.+|+++ |+.+.++...+..+|.+++|.++..+.+
T Consensus 179 ---------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~-- 241 (505)
T TIGR00898 179 ---------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD-- 241 (505)
T ss_pred ---------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH--
Confidence 37889999999999999999999999999999998 9999999999999999999988776653
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 007201 229 MWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 229 g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
|++.|++.++..++..+..++
T Consensus 242 -wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 242 -WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred -HHHHHHHHHHHHHHHHHHHHh
Confidence 999988887666555554443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-20 Score=197.07 Aligned_cols=398 Identities=13% Similarity=0.077 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHH
Q 007201 84 AANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFY 163 (613)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (613)
.+.+++++.++++++++++|+++||+ |||+.+.+..++..++.++..++...+ ...+++
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~--------------------~~e~li 120 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP--------------------SFEMLI 120 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh--------------------hHHHHH
Confidence 46678889999999999999999996 999999999998888887777763323 488999
Q ss_pred HHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHH--HhccccchhHHHHHHHHHH
Q 007201 164 LSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILG--YFEDEGMWALGFWASAGSA 241 (613)
Q Consensus 164 ~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g--~l~~~~g~~~~f~~~~~~~ 241 (613)
++|++.|+..|......+-++.|..|.+. ||....+..++..+|..++..++. .+.....|++.+.+.++..
T Consensus 121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~ 194 (485)
T KOG0569|consen 121 LGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA 194 (485)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999966553 3334456988888888777
Q ss_pred HHHHHHHHHcCC--ccccc-CCCCChhhHHHHHHHHHHhhccccccCCcccchhhhcccccccccCCcccccccccchhh
Q 007201 242 TMALILFLIGTP--RYRHF-KPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFL 318 (613)
Q Consensus 242 ~i~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (613)
++.++.+.+..+ |+--. +.+. .+-.|. .|.-+- .+| .+. ..|. .
T Consensus 195 ~~~l~~l~~~PESPk~Ll~~k~~~---~~A~~s----l~~y~G--~~~-~~~-~~e~----------------------~ 241 (485)
T KOG0569|consen 195 LLQLALLPFLPESPKYLLIKKGDE---EEARKA----LKFYRG--KED-VEA-EIEE----------------------M 241 (485)
T ss_pred HHHHHHHhcCCCCcchHHHHcCCH---HHHHHH----HHHHhC--CCc-chh-HHHH----------------------H
Confidence 766666555421 11000 0000 000011 111000 000 000 0000 0
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccc
Q 007201 319 DKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNIST 398 (613)
Q Consensus 319 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (613)
...+...+. ++++...++...+ +...|+.+...+.+ .+...+......+.+...-.... |
T Consensus 242 -~~e~~~~~~-----------~~~~~~sl~~~~~-~~~lR~~~~i~~~v-----~~~qq~sGi~ai~~Yst~i~~~a--G 301 (485)
T KOG0569|consen 242 -LREIEEEEL-----------EKKKQISLRQLLK-NPTLRRPLLIGIVV-----SFAQQFSGINAIFFYSTSIFKTA--G 301 (485)
T ss_pred -HHHHHHhcc-----------ccccCCcHHHHhc-CcchhHHHHHHHHH-----HHHHHhcCcceeHHHHHHHHHHc--C
Confidence 000000000 0001112211100 00112221111111 11111111111111100000000 1
Q ss_pred cccCccccccc-hhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCC
Q 007201 399 FHIPPASMSSF-DILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCN 477 (613)
Q Consensus 399 ~~~~~~~~~~~-~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~ 477 (613)
+....+...+. ..+..++...+.. .+.+|+|||| .+..+..++.+..+++.........
T Consensus 302 ~~~~~a~~an~~~g~v~~~~t~~~~----~lid~~gRRp---------Lll~~~~~~~~~~~~~~~~~~l~~~------- 361 (485)
T KOG0569|consen 302 FTPEEAQYANLGIGIVNLLSTLVSP----FLIDRLGRRP---------LLLISLSLMAVALLLMSIALFLSNS------- 361 (485)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCcH---------HHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 12111111111 1112222222222 3367888887 7777777777776666655433111
Q ss_pred CCCCCCccchhHHH-HHHHHHHHHH-HHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCC
Q 007201 478 SCESKASTLSIFWQ-IPQYVLIGAS-EVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPG 555 (613)
Q Consensus 478 ~~~~~~~~~s~~~~-i~~~~l~g~~-~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~ 555 (613)
. .....+. +...++..++ .....|..+-+.+|.+|++.|+.++++...++++.+++-.+....+.... +
T Consensus 362 -----~-~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~--g- 432 (485)
T KOG0569|consen 362 -----F-GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI--G- 432 (485)
T ss_pred -----h-hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-
Confidence 0 0011222 3333333333 33457999999999999999999999999999999988888877665433 1
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 007201 556 WIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFEERTV 601 (613)
Q Consensus 556 ~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (613)
..+|+++.+.++++.+..+...+|+|+|+.++..+
T Consensus 433 -----------~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~ 467 (485)
T KOG0569|consen 433 -----------PYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIE 467 (485)
T ss_pred -----------chhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHH
Confidence 14688889999999999999999999988876543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-19 Score=191.25 Aligned_cols=172 Identities=13% Similarity=0.066 Sum_probs=124.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHH-HHH-----HHHHHHHHHHHHHHhhhccCchHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNV-SKW-----TGTVYIFSLLGAFLSDSYWGRYKTCAI 118 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~-~~~-----~~~~~~~~~~~G~lsDr~~Grr~~i~~ 118 (613)
++.....++..++..+-...+.. ....+.++++.++.+.+... +.. .+...+++++.|+++||+ ||||+++.
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 91 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGF-YATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIV 91 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHH
Confidence 34555566666666666655544 44477778998887754433 222 122246788999999996 99999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccch
Q 007201 119 FQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHS 198 (613)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~ 198 (613)
+.+++.++.++++++.+...+ .......++++|++.|++.|...+....+++|++|+++
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~~---------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------ 150 (434)
T PRK15075 92 TLSIMASGTLLIAFVPGYATI---------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------ 150 (434)
T ss_pred HHHHHHHHHHHHHhCCcHHHH---------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------
Confidence 999999999888876210000 00001246889999999999999999999999999998
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhc--------cccchhHHHHHHHH
Q 007201 199 KIAFFSYFYLALNLGSLFSNTILGYFE--------DEGMWALGFWASAG 239 (613)
Q Consensus 199 r~~~~~~~~~~~~iG~~~gp~l~g~l~--------~~~g~~~~f~~~~~ 239 (613)
|+++.+++....++|..+++.+++.+. +.+||+++|++...
T Consensus 151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 999999988888888888877776652 46799999987543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=196.21 Aligned_cols=158 Identities=10% Similarity=0.052 Sum_probs=127.5
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCC
Q 007201 69 LVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEG 148 (613)
Q Consensus 69 l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (613)
...++++ .|.++.+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.+.+.+. +..
T Consensus 49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~---~~~--------- 114 (438)
T TIGR00712 49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFV---PWA--------- 114 (438)
T ss_pred hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcc---ccc---------
Confidence 3446665 599999999999999999999999999999996 99999999988888887776554 110
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHh-ccc
Q 007201 149 NPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYF-EDE 227 (613)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l-~~~ 227 (613)
..+...+++.|++.|++.|...+.....+.|++|+++ |++++++++.+.++|+.++|.+.+.+ ...
T Consensus 115 -------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 181 (438)
T TIGR00712 115 -------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWF 181 (438)
T ss_pred -------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence 1235567788999999999988989999999999998 99999999999999999998887754 445
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHcCC
Q 007201 228 GMWALGFWASAGSATMALILFLIGTP 253 (613)
Q Consensus 228 ~g~~~~f~~~~~~~~i~~~~~~~~~~ 253 (613)
.+|+..|++.++..++..+..++..+
T Consensus 182 ~~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 182 NDWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 68999999887776655444444333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-18 Score=185.23 Aligned_cols=148 Identities=14% Similarity=0.098 Sum_probs=129.6
Q ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCC
Q 007201 73 LTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCG 152 (613)
Q Consensus 73 l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (613)
+.+++|.+..+.++..+++.+++.+++++.|+++||+ |||+++..+.+++.++.+++.++
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a------------------- 101 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT------------------- 101 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc-------------------
Confidence 5678999999999999999999999999999999996 99999999999988888888776
Q ss_pred CCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccchhH
Q 007201 153 SHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWAL 232 (613)
Q Consensus 153 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~ 232 (613)
.+.+.++++|+++|++.+...+.....+.|.+|+++ |++.+++.+...++|..+||.+++++.+..||++
T Consensus 102 ----~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~ 171 (413)
T PRK15403 102 ----TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKV 171 (413)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 237788999999999988766777788899999888 8999999999999999999999999988889999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007201 233 GFWASAGSATMALILFLI 250 (613)
Q Consensus 233 ~f~~~~~~~~i~~~~~~~ 250 (613)
.|++.++..+++.+..+.
T Consensus 172 ~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 172 LFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999888766666554443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-18 Score=186.23 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHH--HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccc
Q 007201 61 AFFGVGVNLVLF--LTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFL 138 (613)
Q Consensus 61 ~~y~~~~~l~~y--l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~ 138 (613)
.+++...+.|.+ +++++|.++.+.+++.+++.++..+++++.|+++||+ |||+++..+.++..++.+.+.+. +
T Consensus 18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~---~- 92 (401)
T PRK11043 18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV---E- 92 (401)
T ss_pred HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh---c-
Confidence 333344444433 6678999999999999999999999999999999996 99999999988888887777765 2
Q ss_pred cCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHH
Q 007201 139 LKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSN 218 (613)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp 218 (613)
+.+.+++.|++.|++.+...+...+++.|.+|+++ +++.++..+...++|..++|
T Consensus 93 -------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~ 147 (401)
T PRK11043 93 -------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAP 147 (401)
T ss_pred -------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHH
Confidence 36778889999999888777888889999999887 88888888888899999999
Q ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 219 TILGYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 219 ~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
.+++++.+..||+..|++.++..++..+..+.
T Consensus 148 ~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 148 LLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999998899999998877666555444443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=188.33 Aligned_cols=179 Identities=12% Similarity=0.003 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTR-VVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
|.++...+. +...+......+.+...+.+ ++|++++|.+++.+++.+.+.+++++.|++.||+ |.|+++.++.++..
T Consensus 34 r~l~~s~~~-f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSC-LLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 555555444 44444444444455556544 7999999999999999999999999999999996 99999999999988
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
+.+++++++...+ ..+++.+++.|++.|++ |...+.....++++||+++ ||++++
T Consensus 112 i~~~~~~~a~~~~------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~G 166 (462)
T PRK15034 112 IPCVWLGIAVQNP------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALG 166 (462)
T ss_pred HHHHHHHHHHccc------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHH
Confidence 8888777641000 12478899999999998 6688889999999999998 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhc-----c-------------ccchhHHHHHHHHHHHHHHHHHHHc
Q 007201 205 YFYLALNLGSLFSNTILGYFE-----D-------------EGMWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~-----~-------------~~g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
++....|+|..+++.+...+. . ..+|+..+++..+..+++.+..++.
T Consensus 167 i~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 167 INGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 987777777776655554322 1 2346666666665555555554444
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-18 Score=185.01 Aligned_cols=365 Identities=10% Similarity=0.004 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH-HH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV-IG 126 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~-~~ 126 (613)
.+.+.+..+....++-...+++|.|++ ++|.|..+.+.+.+++.+...+++++.|.++||+ ||++.......+.. +.
T Consensus 6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~ 83 (382)
T TIGR00902 6 FRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIF 83 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHH
Confidence 344555556666666666788889985 6899999999999999999999999999999996 98544322221111 11
Q ss_pred HH-HHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 127 LV-SLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
.+ .+..+ .+.+.+++.+++++.+.+...|...++..+. +++ |++.++.
T Consensus 84 ~~~~~~~~-----------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~ 132 (382)
T TIGR00902 84 AAAFSAGA-----------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGK 132 (382)
T ss_pred HHHHHHhh-----------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccH
Confidence 11 11222 2377788889989888888888877776543 344 7788999
Q ss_pred HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccC
Q 007201 206 FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISD 285 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (613)
.....++|.+++|.+++++.+.+||+..|++.+....+.. ..+...++.+ |.++. ++
T Consensus 133 ~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~~---~~~~~-------------------~~ 189 (382)
T TIGR00902 133 VRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTIP---PKDAI-------------------PE 189 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCCC---CCccc-------------------cc
Confidence 9999999999999999999999999998887654433222 2222222110 00000 00
Q ss_pred CcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHH
Q 007201 286 DDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLL 365 (613)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 365 (613)
+ + . .+. ..++ +-.++++.+...+
T Consensus 190 ~--~------------------~---~~~------------------------------~~~~----~~l~~~~~~~~l~ 212 (382)
T TIGR00902 190 D--E------------------S---QGD------------------------------SAFI----ALLKNPMNLRFLA 212 (382)
T ss_pred c--c------------------c---ccc------------------------------hhHH----HHHcChHHHHHHH
Confidence 0 0 0 000 0000 0011111111112
Q ss_pred HHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhH
Q 007201 366 PIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQ 445 (613)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~ 445 (613)
..++....+...+...+. +.. ..+.+ ....+....+..+..++..++.+++ .+|+ ...+
T Consensus 213 ~~~l~~~~~~~~~~~~~~-~l~-~~g~s------~~~~g~l~~~~~~~~i~~~~~~~~l----~~r~---------g~~~ 271 (382)
T TIGR00902 213 AVCLIQGAHAAYYGFSAI-YWQ-AAGIS------ASATGLLWGIGVLAEIIIFAFSNKL----FQNC---------SARD 271 (382)
T ss_pred HHHHHHHHHHHHHHHHHH-HHH-HCCCC------HhHHHHHHHHHHHHHHHHHHHhHHH----HhhC---------CHHH
Confidence 122222222222222211 111 01111 1112223333344444444444433 5554 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHH
Q 007201 446 RMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFG 525 (613)
Q Consensus 446 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~ 525 (613)
.+.+|.++.++..+.+.+.+ +.+.++...++.++..++..+....++.+. |++.++++
T Consensus 272 ~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~ 329 (382)
T TIGR00902 272 LLLISAIACVGRWAIIGAIE---------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKL 329 (382)
T ss_pred HHHHHHHHHHHHHHHHHhHh---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHH
Confidence 67788888888877775432 445566677999999999999999999988 99999999
Q ss_pred HHHHH-HHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 007201 526 SALCM-TSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLF 582 (613)
Q Consensus 526 ~g~~~-~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~ 582 (613)
+++++ ...++|..+++.+.|.+.+.. + ...|++.+++++++++
T Consensus 330 q~~~~~~~~g~g~~~g~~~~G~l~~~~-------------g-~~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 330 QALYNALAMGGLIAIFTAFAGFIYPTL-------------G-AGTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-------------c-HHHHHHHHHHHHHHHH
Confidence 99986 567899999999998776532 1 1457777777765543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-18 Score=183.46 Aligned_cols=172 Identities=16% Similarity=0.121 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGL 127 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~ 127 (613)
+.......+....+.......+|. +.+++|.++.+.++..+.+.++..+++++.|+++||+ |||+.+..+.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHH
Confidence 333444445555555555555554 4567999999999999999999999999999999996 99999999998888888
Q ss_pred HHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHH
Q 007201 128 VSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFY 207 (613)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~ 207 (613)
+++..+ + +.+.+++.|++.|++.+...+...+++.|.+|+++ |+++.++.+
T Consensus 83 ~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~ 133 (392)
T PRK10473 83 LLCSLA---E--------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLN 133 (392)
T ss_pred HHHHHh---C--------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence 777765 2 25667889999999999888899999999999888 999999999
Q ss_pred HHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 208 LALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 208 ~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
...++|..++|.+++++.+..||+..|++.++..++..+....
T Consensus 134 ~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 134 GITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888889999988887665555444333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=182.96 Aligned_cols=156 Identities=19% Similarity=0.213 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 007201 64 GVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSG 143 (613)
Q Consensus 64 ~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~ 143 (613)
...+.+|.+. +++|.++.+.+++.+++.++..++.+++|+++||+ |||+++..+.++..++.+.+.+. +
T Consensus 9 ~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~---~------ 77 (377)
T PRK11102 9 MYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA---Q------ 77 (377)
T ss_pred HHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH---c------
Confidence 4446666665 57999999999999999999999999999999996 99999999999888888887766 2
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHH
Q 007201 144 CGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGY 223 (613)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~ 223 (613)
+.+.+++.+++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.++++
T Consensus 78 --------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~ 137 (377)
T PRK11102 78 --------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGW 137 (377)
T ss_pred --------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678889999999999889999999999999888 9999999999999999999999999
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 224 FEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 224 l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
+.+..+|+..|++.++..++..+....
T Consensus 138 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 138 LLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 988889999998877666555444433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-18 Score=185.35 Aligned_cols=354 Identities=14% Similarity=0.127 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc---cCchH-HHHHHHHHHHHHHHHH
Q 007201 55 QGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSY---WGRYK-TCAIFQAIFVIGLVSL 130 (613)
Q Consensus 55 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grr~-~i~~~~~l~~~~~~~~ 130 (613)
.+..+.....+..+++.|+++++|+++.+++.+.++..+...+..|+.|+++||. +|||| .++++.....++.+++
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~ 87 (437)
T TIGR00792 8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL 87 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence 3455666667778899999999999999999999999999999999999999983 48855 5666767777776666
Q ss_pred HhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCC-CCCccccchhhhHHHHHHHH
Q 007201 131 SVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFD-EEDPKEGHSKIAFFSYFYLA 209 (613)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p-~~~~~~~~~r~~~~~~~~~~ 209 (613)
... |.. ........+++.+++.+++.+.......++.+|..+ +++ |++..++.+..
T Consensus 88 ~~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~~ 144 (437)
T TIGR00792 88 FTT---PDF--------------SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRFG 144 (437)
T ss_pred HhC---CCC--------------CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHHH
Confidence 654 220 001224556667777888888888888888888874 345 88999998888
Q ss_pred HhHHHHHHHHHHHHhc-------cccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhcccc
Q 007201 210 LNLGSLFSNTILGYFE-------DEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQ 282 (613)
Q Consensus 210 ~~iG~~~gp~l~g~l~-------~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (613)
.++|+.+++.+.+.+. +..+|+..+.+.++..++..+..+...++.+++.+..+
T Consensus 145 ~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~------------------- 205 (437)
T TIGR00792 145 ATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNI------------------- 205 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccc-------------------
Confidence 8888887776655443 24579988887776655554443333222110000000
Q ss_pred ccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHH
Q 007201 283 ISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCIL 362 (613)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 362 (613)
+ ++ ....+ .+ +.....|.+.
T Consensus 206 ---~-~~-------------------------~~~~~--------------------------~~-----~~l~~~~~~~ 225 (437)
T TIGR00792 206 ---E-KK-------------------------LSLKQ--------------------------IF-----KALFKNDQLL 225 (437)
T ss_pred ---c-cC-------------------------CCHHH--------------------------HH-----HHHhCCHHHH
Confidence 0 00 00000 00 0000111222
Q ss_pred HHH-HHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCC
Q 007201 363 RLL-PIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGF 441 (613)
Q Consensus 363 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~ 441 (613)
..+ ..++....+... .....++..... .. ....+.+..+..+..++..++.+++ .+|+++|.
T Consensus 226 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~-----~~~~~~~~~~~~i~~ii~~~~~~~l----~~r~g~~~----- 288 (437)
T TIGR00792 226 ILCLAYLFYNLAFNIK-NGVQVYYFTYVL--GD-----PELFSYMGSIAIVAGLIGVLLFPRL----VKKFGRKI----- 288 (437)
T ss_pred HHHHHHHHHHHHHHHH-cchhheeEeeec--CC-----hHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCcHH-----
Confidence 111 112222222221 111222222111 10 1011233334455556666666655 55654332
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCC---
Q 007201 442 TELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAP--- 518 (613)
Q Consensus 442 ~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P--- 518 (613)
.+..|.++.+++++.+.+.. .+.+.++...++.+++.+...+..++++.+.+|
T Consensus 289 ----~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (437)
T TIGR00792 289 ----LFAGGILLMVLGYLIFFFAG--------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGE 344 (437)
T ss_pred ----HHHHHHHHHHHHHHHHHHcc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 55667767666665554321 123344556677888888888888888888765
Q ss_pred ----chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 007201 519 ----DGLKSFGSALCMTSISLGNYVSSLLVTIVMKIS 551 (613)
Q Consensus 519 ----~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~ 551 (613)
++.+|.++|++++...+|+.+++.+.+.+.+..
T Consensus 345 ~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 345 WKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567899999999999999999999999887654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-18 Score=185.87 Aligned_cols=180 Identities=13% Similarity=0.045 Sum_probs=132.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.+|.+....++...++..+.++++.|+++++|+++.+.+++.+++.+...+++++.|+++||+ ||||.++.+.....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 4577777888888888888899999999999999999999999999999999999999999996 999999887665554
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
+...+......+.. .......+++.+++.+++.+...+....+..|..+ + ++..++.
T Consensus 81 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~ 137 (396)
T TIGR00882 81 LFAPFFIYVFGPLL---------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGK 137 (396)
T ss_pred HHHHHHHHHhhhHH---------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccch
Confidence 43322211000100 00112334566777888888777877777666422 1 3345667
Q ss_pred HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 206 FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
.....++|.++||.+++.+.+ .+|+..|++.+...++..+..+.
T Consensus 138 ~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 138 ARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred hhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHH
Confidence 777889999999999998865 69999998887666655444443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-19 Score=188.60 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=131.3
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCC
Q 007201 69 LVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEG 148 (613)
Q Consensus 69 l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (613)
...++.+++|.++.+.+++.++..++..++.++.|+++||+ |||+++.++.++..++.+++.++
T Consensus 17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~--------------- 80 (379)
T TIGR00881 17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS--------------- 80 (379)
T ss_pred hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh---------------
Confidence 34577889999999999999999999999999999999996 99999999999988888888776
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHH-HHHHHhccc
Q 007201 149 NPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSN-TILGYFEDE 227 (613)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp-~l~g~l~~~ 227 (613)
.+.+.+++.|++.|++.+...+...++++|.+|+++ |++++++.+.+.++|..++| .+++.+.+.
T Consensus 81 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 146 (379)
T TIGR00881 81 --------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAEL 146 (379)
T ss_pred --------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhc
Confidence 236778899999999999999999999999999988 99999999999999999999 566777777
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 007201 228 GMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 228 ~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
.+|+..|++.+++.++..+..+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 147 YSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred CCchhHHHHHHHHHHHHHHHHhe
Confidence 89999988877665544444333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-18 Score=208.10 Aligned_cols=155 Identities=13% Similarity=0.104 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh--hHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNA--DAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIF 123 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~--~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~ 123 (613)
+.+..+++..++..+...+....+..++...++.+.. ..+++.+++.+...++++++|+++||+ |||++++++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence 4555666666666666655555666666666666543 368888899999999999999999996 9999999988776
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
+++.++..++.. ..+.+.+++.|++.|++.+...++..++++|++|+++ |++++
T Consensus 88 ~~~~~~~~~~~~--------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~ 141 (1146)
T PRK08633 88 VGLTLLIVLAYY--------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRAN 141 (1146)
T ss_pred HHHHHHHHHHHH--------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhh
Confidence 665555444311 1237789999999999999999999999999999988 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccc
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDE 227 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~ 227 (613)
+++..+.++|.++||.+++++...
T Consensus 142 ~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 142 GLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998765
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.3e-20 Score=191.69 Aligned_cols=181 Identities=16% Similarity=0.227 Sum_probs=161.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007201 42 TGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA 121 (613)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~ 121 (613)
...++.+.++++...++..--|.+...+ .-.++.+|+++++.|.+...+.+..+++.|+.|+++||| .||+++..|.+
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~ 106 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIF 106 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHH
Confidence 3445678888899999999988887633 456778999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
++.++.++.+++ .++|.+.+.|.+.|+|.+.+.+.++++++|.||+.+ |++
T Consensus 107 iW~~Av~~~~fs-----------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~ 157 (493)
T KOG1330|consen 107 IWTLAVFASGFS-----------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSR 157 (493)
T ss_pred HHHHHHHHHHHH-----------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhH
Confidence 999999999887 458999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHHcCC
Q 007201 202 FFSYFYLALNLGSLFSNTILGYFEDEGM-WALGFWASAGSATMALILFLIGTP 253 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~ 253 (613)
.++++|+++++|.++|..+++.+....+ ||+.|...+++.++..++.++..+
T Consensus 158 ~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 158 VLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred HHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 9999999999999999999999888766 999999998887776666655544
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-18 Score=183.17 Aligned_cols=153 Identities=12% Similarity=0.030 Sum_probs=124.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
...++.+.+..+...+........+|. +++++|.++.+.++..+.+.++..+++++.|+++||+ ||||++..+..++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~ 102 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 345566666666666666555555665 4889999999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
++.+++..... ..+++.++++|+++|+|.|...+..++++.|..|+++ |...++
T Consensus 103 ~~~~l~~~~~~--------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s 156 (438)
T PRK10133 103 LGAALFWPAAE--------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLN 156 (438)
T ss_pred HHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHH
Confidence 98877642211 1237789999999999999999999999998766655 666788
Q ss_pred HHHHHHhHHHHHHHHHHHHhc
Q 007201 205 YFYLALNLGSLFSNTILGYFE 225 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~ 225 (613)
+.+....+|..+||.+++.+.
T Consensus 157 ~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 157 LAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999998876543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-17 Score=185.16 Aligned_cols=358 Identities=15% Similarity=0.102 Sum_probs=227.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.+..+++.++..+++......-++-++. ++.-|+...+.+.....+-..+..+++|.++||+ .|||+++.+-++..+
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~ 87 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL 87 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence 34445555566666665555544554444 5677889999999999999999999999999996 999999999887766
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
....+.+..... ..+.+.+++..++.|++.+...|+..+++.|..|+++ ..++.++
T Consensus 88 ~~~~L~~l~~~~------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al 143 (524)
T PF05977_consen 88 VALLLAVLAFFG------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANAL 143 (524)
T ss_pred HHHHHHHHHHhC------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHH
Confidence 555544432211 1347788888899999999999999999999999988 8999999
Q ss_pred HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccC
Q 007201 206 FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISD 285 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (613)
.+...|+...+||.++|.+....|-...|.+.++..++.++.+...+++.+.+ ..+.....+.+..
T Consensus 144 ~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~---~~~~e~~~~~l~~----------- 209 (524)
T PF05977_consen 144 NSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPS---SLPRERFFSALRE----------- 209 (524)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc---ccchhhhhhhHHH-----------
Confidence 99999999999999999998888888899988877766555444433321111 0000000000000
Q ss_pred CcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHH
Q 007201 286 DDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLL 365 (613)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 365 (613)
.++. +...+.+...+
T Consensus 210 ------------------------------------------------------------G~ry-----v~~~~~l~~~l 224 (524)
T PF05977_consen 210 ------------------------------------------------------------GLRY-----VRSSPPLRSVL 224 (524)
T ss_pred ------------------------------------------------------------HHHH-----HhcchHHHHHH
Confidence 0000 00001111111
Q ss_pred H-HHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChh
Q 007201 366 P-IWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTEL 444 (613)
Q Consensus 366 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~ 444 (613)
. .+++........ ..++.. ....+++-...-+.+....+++.++++.+..++ .+|+ +..
T Consensus 225 ~~~~~~~l~~~a~~----aLlPl~---a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l----~~~~---------~~~ 284 (524)
T PF05977_consen 225 LRSFLFNLFASAVW----ALLPLF---ARDVLGGGASGYGLLLAAFGVGAILGALLLPRL----RRRL---------SSR 284 (524)
T ss_pred HHHHHHHHhhhHHH----HhhhHH---HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHh----hccc---------Ccc
Confidence 1 111111111111 111111 111111001111223333334444444333332 2222 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHH
Q 007201 445 QRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSF 524 (613)
Q Consensus 445 ~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~ 524 (613)
+.+..+.++.+++++.+++.. +.+..++..++.|++.........+.+++..|+++||+
T Consensus 285 ~lv~~~~~~~a~~~~~lal~~---------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GR 343 (524)
T PF05977_consen 285 RLVLLASLLFALALLLLALSP---------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGR 343 (524)
T ss_pred hhhHHHHHHHHHHHHHHhcch---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhH
Confidence 455667777777776665432 44556677788899999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhh
Q 007201 525 GSALCMTSISLGNYVSSLLVTIVMK 549 (613)
Q Consensus 525 ~~g~~~~~~~lg~~i~~~l~~~i~~ 549 (613)
+++++......+..+|.++.|.+..
T Consensus 344 v~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 344 VFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-18 Score=189.38 Aligned_cols=405 Identities=16% Similarity=0.127 Sum_probs=233.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHH
Q 007201 83 DAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALF 162 (613)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (613)
+.+++.++..++..++.++.|+++|++ |||++++++.+++.++.++++++ .+..++
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a-----------------------~~~~~l 145 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA-----------------------PSWYQL 145 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh-----------------------hhHHHH
Confidence 448999999999999999999999996 99999999999999999999988 248889
Q ss_pred HHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccc-cchhHHHHHHHHHH
Q 007201 163 YLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDE-GMWALGFWASAGSA 241 (613)
Q Consensus 163 ~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~-~g~~~~f~~~~~~~ 241 (613)
+++|++.|+|.|+.....+.+++|..|++. |+...+..+...++|..++..++....+. ++||..+.+..+..
T Consensus 146 ~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~ 219 (513)
T KOG0254|consen 146 IVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPA 219 (513)
T ss_pred HHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999995444444332 48998888777665
Q ss_pred HHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccCCcccchhhhcccccccccCCcccccccccchhhhhh
Q 007201 242 TMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKA 321 (613)
Q Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (613)
++..+..++ .++.++.--.........+++......+ ++|... +. ..+...
T Consensus 220 ~~~~~~~~~-~pesp~~L~~~g~~~~a~~~l~~l~g~~-----~~~~~~---~~--------------------~~~~~~ 270 (513)
T KOG0254|consen 220 VILALGMLF-LPESPRWLIEKGRLEEAKRSLKRLRGLS-----PEDVEV---EL--------------------ELLKIK 270 (513)
T ss_pred HHHHHHHHh-CCCChHHHHHcCChHHHHHHHHHHhCCC-----CcchHH---HH--------------------HHHHHH
Confidence 555555333 2311100000111111111111111100 000000 00 000000
Q ss_pred hhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCcccccc
Q 007201 322 AVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHI 401 (613)
Q Consensus 322 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (613)
...... .......|+.+.. ...+|+....+ ....+... ........+....++.. +...
T Consensus 271 ~~~~~~------------~~~~~~~~~~l~~--~~~~~~~~i~~----~l~~fqq~-tG~~~~~~Y~~~if~~~--g~~~ 329 (513)
T KOG0254|consen 271 LLVEAE------------VAEGKASWGELFS--PKVRKRLIIGL----LLQLFQQL-TGINYVFYYSTTIFKSA--GLKS 329 (513)
T ss_pred HHHhhh------------cccccccHHHhcC--cchHHHHHHHH----HHHHHHHH-hCCceEEeehHHHHHhc--CCCC
Confidence 000000 0000011221111 01122222111 11111111 22222222211111111 1121
Q ss_pred CccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCC
Q 007201 402 PPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCES 481 (613)
Q Consensus 402 ~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (613)
+......+..+...+...+... +.+|++||+ .+..|...+.+++++++.......+...
T Consensus 330 ~~~~~~~~~~~v~~~~t~~~~~----lvd~~gRr~---------lll~s~~~m~~~~~~~~~~~~~~~~~~~-------- 388 (513)
T KOG0254|consen 330 DTFLASIILGVVNFLGTLVATY----LVDRFGRRK---------LLLFGAAGMSICLVILAVVGVFALYYPN-------- 388 (513)
T ss_pred chHHHHHHHHHHHHHHHHHHHH----HHHHhccHH---------HHHHhHHHHHHHHHHHHHHHHHhccCCC--------
Confidence 1111122222222222222233 366777776 7788888888888888766433100000
Q ss_pred CCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 007201 482 KASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNL 561 (613)
Q Consensus 482 ~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~ 561 (613)
......++.++..+++.........|..+.+..|.+|.+.|+.+.++...++++.+.+-...........+
T Consensus 389 ~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~--------- 459 (513)
T KOG0254|consen 389 SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG--------- 459 (513)
T ss_pred cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 01122333333444445555556678888899999999999999999999999988666555444432110
Q ss_pred CcchhHHHHHHHHHHHHHHHH-HHHHhhhhccccccccccc
Q 007201 562 NKGHLDRFYFLLAALTTADLF-IYIICARWYKYIKFEERTV 601 (613)
Q Consensus 562 ~~~~~~~~f~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 601 (613)
....|+.+++++.+..+ ++++..+|+|+++.|+.+.
T Consensus 460 ----~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 460 ----IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINE 496 (513)
T ss_pred ----ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence 12346666666777777 7888999999999987654
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-18 Score=178.24 Aligned_cols=391 Identities=12% Similarity=-0.009 Sum_probs=255.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007201 42 TGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA 121 (613)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~ 121 (613)
+.++|.++.... .+...+..+.+.+.+..++++++|+|+.|.++++.+..+...+..++-|++.||+ |.|++..++.+
T Consensus 10 ~~~~~~L~~S~~-af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWLSTL-AFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML 87 (417)
T ss_pred cchhHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence 344566654444 4555566667777788899999999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
+..+-.+..+++...|+ .+.+++..+++|++ |+..+...++++++||+++ +|.
T Consensus 88 l~~IP~~~~~~a~~~~~--------------------~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~------qG~ 140 (417)
T COG2223 88 LLLIPCLGLAFAVTYPS--------------------TWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK------QGL 140 (417)
T ss_pred HHHHHHHHHHHHccCCc--------------------hHHHHHHHHHHhcc-cceehcccccccccCChhh------hhH
Confidence 98888888888744333 46788888888888 5578888999999999999 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhccccc---hhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhh
Q 007201 202 FFSYFYLALNLGSLFSNTILGYFEDEGM---WALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRK 278 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l~~~~g---~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (613)
+.+++. ..|+|..+...++.++....+ |+....+..+..+++.+..++..++.+..++..++...
T Consensus 141 AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~----------- 208 (417)
T COG2223 141 ALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP----------- 208 (417)
T ss_pred HHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch-----------
Confidence 999998 999999999999999888888 88887777777777666666655443221111110000
Q ss_pred ccccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhH-H
Q 007201 279 WKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVE-E 357 (613)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 357 (613)
. +. +.+. +
T Consensus 209 ------------------------------------------~------------------------~~-----~~v~~~ 217 (417)
T COG2223 209 ------------------------------------------A------------------------QL-----KAVFSN 217 (417)
T ss_pred ------------------------------------------h------------------------HH-----HHHhcC
Confidence 0 00 0000 1
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCC
Q 007201 358 VKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSG 437 (613)
Q Consensus 358 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~ 437 (613)
++.+...+..+.....|-..-.+.+.++ ..+++-....++.+....++...+.-|+.+++ .||++++.
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~-------~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~L----sDR~Gg~r- 285 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYL-------VTQFGLSPVTAGLIAFLFPLIGALARPLGGWL----SDRIGGRR- 285 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCCChhhHHHHHHHHHHHHHHHHhccchh----hhhccchh-
Confidence 1111111111222222222222222211 22222113344566667777778888888877 45654432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccC
Q 007201 438 TRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQA 517 (613)
Q Consensus 438 ~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~ 517 (613)
...+.+..++++.......... + ....+....+...+..++..++-+-..+-++..+.
T Consensus 286 --------v~~~~f~~~~~~~~~l~~~~~~------------~--~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if 343 (417)
T COG2223 286 --------VTLAVFVGMALAAALLSLFLTG------------F--GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIF 343 (417)
T ss_pred --------HHHHHHHHHHHHHHHHHccccc------------c--ccCcchHHHHHHHHHHHHHhccCcchheeechHHH
Confidence 4455555555555555433211 0 11123333333333444444444445555555556
Q ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007201 518 PDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWY 591 (613)
Q Consensus 518 P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~ 591 (613)
|+ +.|.+.|+....+++|++.-|...+...+.+ +.+...|+++..+.+++.+..+....++
T Consensus 344 ~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t------------g~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 344 PK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT------------GSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred Hh-hhhHHHHHHHHhccccccchhHHHHHHHHhc------------ccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54 6788999999999999988888888776544 2356788999999899888887776654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-18 Score=207.32 Aligned_cols=341 Identities=12% Similarity=0.062 Sum_probs=195.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH--HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhH
Q 007201 82 ADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA--IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHM 159 (613)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (613)
...++..+++.+...++++++|+++||+ |||+++..... +.......+.+. ..+.
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~----------------------~~s~ 108 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFH----------------------LNSV 108 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHH----------------------HhhH
Confidence 3467777788899999999999999996 99998644222 222222222222 0237
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHH
Q 007201 160 ALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAG 239 (613)
Q Consensus 160 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~ 239 (613)
+.++++|+++|++.++..|+..+++.+++|+++ |++++++.+++.++|.++||.++|++....+|+..|+..++
T Consensus 109 ~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~ 182 (1140)
T PRK06814 109 PLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMG 182 (1140)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 889999999999999999999999999999998 99999999999999999999999999988899988854444
Q ss_pred HHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccCCcccchhhhcccccccccCCcccccccccchhhh
Q 007201 240 SATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLD 319 (613)
Q Consensus 240 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (613)
+.+++.++.+...+ .+..++...... . .. .+
T Consensus 183 ~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~--~~------------------------~~ 213 (1140)
T PRK06814 183 IAVLGWLASLFIPK-TGNAAPDLKIDR----------------------N--II------------------------RS 213 (1140)
T ss_pred HHHHHHHHHhhCCC-CCCCCCCCeecc----------------------c--hH------------------------HH
Confidence 44444333333221 111000000000 0 00 00
Q ss_pred hhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCcccc
Q 007201 320 KAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTF 399 (613)
Q Consensus 320 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (613)
.. ..++ ...+++..+...+..+.....+.....+++.+. ...++.-
T Consensus 214 ~~-----------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-------~~~~g~~ 259 (1140)
T PRK06814 214 TI-----------------------TLLK----YAKADKRIWLAILGISWFWLVGAVVLSQLPLLA-------KETLGGD 259 (1140)
T ss_pred HH-----------------------HHHH----HHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHcCCc
Confidence 00 0000 000001111111111222222222222222211 1111000
Q ss_pred ccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhh-hhhhccccCCC
Q 007201 400 HIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIF-RLKYSIKDCNS 478 (613)
Q Consensus 400 ~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~-~~~~~~~~~~~ 478 (613)
....+.+.....++.+++..+.+++ .+|..++ ..+..+.++.+++.+.+.+.... .........-.
T Consensus 260 ~~~~g~~~~~~~~g~~ig~~~~g~l----~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (1140)
T PRK06814 260 ENVATLFLAVFSVGVAVGSFLASKL----SEGRITL---------LYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL 326 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----hCCceee---------eeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence 1123445555666667777776665 3332211 12333444444433333221000 00000000000
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 007201 479 CESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMK 549 (613)
Q Consensus 479 ~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~ 549 (613)
.-....+.+.+++.+++.|++.++..+...+++.+.+|++.+|+++|+.++...++..+++++++.+..
T Consensus 327 --~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 327 --VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred --hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000012345566777888999999998899999999999999999999999999999999998887753
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-17 Score=181.65 Aligned_cols=177 Identities=15% Similarity=0.149 Sum_probs=138.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CchHH-HH
Q 007201 44 TWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYW-----GRYKT-CA 117 (613)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~-----Grr~~-i~ 117 (613)
++|+.+.+++..+......+.....++.|++ +.|.+.++.+.... .... +++.++.|.++|| + ||||. +.
T Consensus 10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~~-~~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~ll 85 (491)
T PRK11010 10 QQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFSL-VGQA-YVFKFLWSPLMDR-YTPPFLGRRRGWLL 85 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHH-HHHH-HHHHHHHHHHHHc-ccccCCCCchHHHH
Confidence 3455777888888888888888888898976 46999988888632 2222 3689999999999 6 99886 55
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccc
Q 007201 118 IFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGH 197 (613)
Q Consensus 118 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~ 197 (613)
.+.+...++...+++.. | ..+.+.+.+.+++.+++.+...+...++..|++|+++
T Consensus 86 ~~~i~~~~~~~~~a~~~--~------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~----- 140 (491)
T PRK11010 86 ATQLLLLVAIAAMGFLE--P------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE----- 140 (491)
T ss_pred HHHHHHHHHHHHHHHcC--C------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh-----
Confidence 66666666666666641 1 1346778888888898888888999999999999888
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHHH
Q 007201 198 SKIAFFSYFYLALNLGSLFSNTILGYFED-EGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 198 ~r~~~~~~~~~~~~iG~~~gp~l~g~l~~-~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
|+++.++...+.++|..+++.+.+++.+ ..||+..|++.++..++..+..+.
T Consensus 141 -rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 141 -RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988 469999999888766555444333
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-17 Score=178.88 Aligned_cols=387 Identities=11% Similarity=0.082 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hHHHHHHHHHHHHHHHH
Q 007201 51 ILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGR-YKTCAIFQAIFVIGLVS 129 (613)
Q Consensus 51 l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Gr-r~~i~~~~~l~~~~~~~ 129 (613)
+.+..++...++-.+.++++.|+++++|++..+.|++.+++.++..+++++.|+++||+ || |+++.++.++..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence 44555566666666678999999999999999999999999999999999999999995 65 77888777776666666
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhcc--------CCCCCccccchhhh
Q 007201 130 LSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQ--------FDEEDPKEGHSKIA 201 (613)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~--------~p~~~~~~~~~r~~ 201 (613)
+.+. .+.+.+++.+++.+++.+...+...+...+. ..... |.+
T Consensus 86 ~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------~~r 136 (418)
T TIGR00889 86 AAQV-----------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------PIR 136 (418)
T ss_pred HHHh-----------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------Cee
Confidence 5554 1255567777777887665555554443222 11111 334
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccc
Q 007201 202 FFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKV 281 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (613)
.++ .+|.++||.+++.+.....|. +|++.++..++..+..+ ..++.++.+.+.. .+..+ .
T Consensus 137 ~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~--~~~~~-------~--- 196 (418)
T TIGR00889 137 VMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAKSTAK--MSIKV-------M--- 196 (418)
T ss_pred eeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCccccc--cCHHH-------H---
Confidence 443 478888898888884433344 45555544444433322 2222110000000 00000 0
Q ss_pred cccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHH
Q 007201 282 QISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCI 361 (613)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 361 (613)
....+.+ ..++++..
T Consensus 197 -------------------------------~~~~~~~----------------------------------~~k~~~~~ 211 (418)
T TIGR00889 197 -------------------------------LGLDAFI----------------------------------LFKNKRMA 211 (418)
T ss_pred -------------------------------hhhhHHH----------------------------------HhcCCCee
Confidence 0000000 00000000
Q ss_pred HHHHHHHHHhHHHhhhhhcccceeeeehhhcccCcc-ccc-cCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCC
Q 007201 362 LRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNIS-TFH-IPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTR 439 (613)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~ 439 (613)
...+..++........+...+.+. . ....+.... ++. ...+....+..+..++...+.+++ .+|+++|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l----~dr~g~r~--- 282 (418)
T TIGR00889 212 IFFFFSMLLGAPLQITNIFGNGFL-H-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFF----LKRFGIKK--- 282 (418)
T ss_pred eHHHHHHHHHhHHHHHHHhHHHHH-H-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHhCcHH---
Confidence 001111111111111111111000 0 000000000 000 011333344444455555555554 56665443
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCc
Q 007201 440 GFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPD 519 (613)
Q Consensus 440 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~ 519 (613)
.+.++.++.++++.++.... ......+.++...++.++++++..+....++.+.+|+
T Consensus 283 ------~l~~~~~~~~v~~~l~~~~~-----------------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~ 339 (418)
T TIGR00889 283 ------VMLLSLVAWALRFGFFAYGD-----------------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV 339 (418)
T ss_pred ------HHHHHHHHHHHHHHHHHHcC-----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 56677777777665554321 1111233445567888999988888888999999999
Q ss_pred hhHHHHHHHHH-HHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007201 520 GLKSFGSALCM-TSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWY 591 (613)
Q Consensus 520 ~~rg~~~g~~~-~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~ 591 (613)
+.||+++|+.+ ....+|..++|.+.+.+.+..++. +..+++..|.+.+++.+++++.++++.++.
T Consensus 340 ~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~-------~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 340 HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAY-------GTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-------cCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999997 578899999999999877643210 001356778888888888877777777654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=182.51 Aligned_cols=160 Identities=13% Similarity=0.097 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007201 47 AGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIG 126 (613)
Q Consensus 47 ~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~ 126 (613)
..++.++..+......+.+.+.+|.++++++|+++.+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~ 80 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP 80 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 355666777777777777888888789999999999999999999999999999999999996 9999999999999998
Q ss_pred HHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHH
Q 007201 127 LVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYF 206 (613)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~ 206 (613)
.+++.++ + .+.+.+++.|++.|++.+. .+...++++|++|+++ |+++.+++
T Consensus 81 ~~~~~~~---~-------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~~~ 131 (366)
T TIGR00886 81 CLWAGLA---V-------------------QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALGLA 131 (366)
T ss_pred HHHHHHH---h-------------------hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHHHH
Confidence 8888776 1 0377788899999998654 4567889999999888 99999999
Q ss_pred HHHHhHHHHHHHHHHHHhcc----------ccchhHHHHH
Q 007201 207 YLALNLGSLFSNTILGYFED----------EGMWALGFWA 236 (613)
Q Consensus 207 ~~~~~iG~~~gp~l~g~l~~----------~~g~~~~f~~ 236 (613)
....++|..+++.+++.+.. ..+|++.|++
T Consensus 132 ~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 132 AGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 88888888888777765543 2479988843
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-17 Score=176.75 Aligned_cols=155 Identities=12% Similarity=-0.014 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCch----HHHHHHHHHHHHHHHHH
Q 007201 55 QGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRY----KTCAIFQAIFVIGLVSL 130 (613)
Q Consensus 55 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr----~~i~~~~~l~~~~~~~~ 130 (613)
.+....++..+.+++|.|++ ++|.|..++|++.+++.+...++++++|.++||+ ||+ +.+.++..+. ...+
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~---~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF---AVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH---HHHH
Confidence 34444555667788899985 5899999999999999999999999999999996 984 3333222111 1111
Q ss_pred HhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHH
Q 007201 131 SVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLAL 210 (613)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~ 210 (613)
... ..+.+.+++.|++.+++.+...+...++..++ .++ |++.++..+...
T Consensus 88 ~~~----------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~ 137 (382)
T PRK11128 88 WFG----------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWG 137 (382)
T ss_pred HHh----------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHH
Confidence 111 12377788889999999888888887777765 233 667777888888
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q 007201 211 NLGSLFSNTILGYFEDEGMWALGFWASAGSATMA 244 (613)
Q Consensus 211 ~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~ 244 (613)
++|.++||.+++++.+++||+..|++.++..++.
T Consensus 138 ~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~ 171 (382)
T PRK11128 138 SIAFVIGSALTGKLVSWFGEQAILWILTAGVASM 171 (382)
T ss_pred HHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 9999999999999999899999998777544443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-17 Score=172.51 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc----cCchHHH-HHHHHHHHHHHHHHHhhhcccccCC
Q 007201 67 VNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSY----WGRYKTC-AIFQAIFVIGLVSLSVSSYAFLLKP 141 (613)
Q Consensus 67 ~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~----~Grr~~i-~~~~~l~~~~~~~~~~~~~~~~~~~ 141 (613)
......+.+++|+|.++.++.... .+...+ .++.|.++||+ +||||.+ +.+.++..+..+.+++.. .
T Consensus 8 ~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---~--- 79 (356)
T TIGR00901 8 GNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---P--- 79 (356)
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC---c---
Confidence 333344456789999999988654 333333 89999999995 3899975 555656666655555541 1
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHH
Q 007201 142 SGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTIL 221 (613)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~ 221 (613)
..+.+.+....++.+++.+...++..++++|++|+++ |+++.++...+.++|.++++.++
T Consensus 80 --------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~ 139 (356)
T TIGR00901 80 --------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLA 139 (356)
T ss_pred --------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHH
Confidence 1234555566666777778888999999999999888 99999999999999999999999
Q ss_pred HHhccccc--------hhHHHHHHHHHHHHHHHHHHH
Q 007201 222 GYFEDEGM--------WALGFWASAGSATMALILFLI 250 (613)
Q Consensus 222 g~l~~~~g--------~~~~f~~~~~~~~i~~~~~~~ 250 (613)
+++....| |+..|++.++..+++.+..++
T Consensus 140 ~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 140 LVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 98887777 999999888766665544443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-16 Score=168.01 Aligned_cols=168 Identities=18% Similarity=0.128 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc----cCchH-HHHHHHHHHHH
Q 007201 51 ILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSY----WGRYK-TCAIFQAIFVI 125 (613)
Q Consensus 51 l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~----~Grr~-~i~~~~~l~~~ 125 (613)
++...+.+...+.-...-+|.|++ +.|++.++.|++..+... .+..++.|+++||+ +|||| .+.++.++..+
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 4 MLLLGFASGLPLALTSGTLQAWMT-VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence 345566677777777788899998 469999999998666654 68999999999994 17776 67777777777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
+...+.+. +. ..+.+.+++..++.++..+...+...++++|++|+++ |+++.++
T Consensus 81 ~~~~l~~~---~~-----------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~ 134 (402)
T PRK11902 81 SIAAMAFC---PP-----------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAV 134 (402)
T ss_pred HHHHHHhc---Cc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHH
Confidence 77766665 11 1235656666667777888888999999999999998 9999999
Q ss_pred HHHHHhHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHHH
Q 007201 206 FYLALNLGSLFSNTILGYFEDE-GMWALGFWASAGSATMALIL 247 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~-~g~~~~f~~~~~~~~i~~~~ 247 (613)
..++.++|..+++.+++++.+. .||+..|++.++..++..+.
T Consensus 135 ~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 135 KVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988775 59999999877765544443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-17 Score=172.51 Aligned_cols=155 Identities=15% Similarity=0.084 Sum_probs=113.5
Q ss_pred HHHHHHHHHhC--CChhhHHHHHHH--H---HHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccC
Q 007201 68 NLVLFLTRVVG--QNNADAANNVSK--W---TGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLK 140 (613)
Q Consensus 68 ~l~~yl~~~lg--~~~~~~~~~~~~--~---~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~ 140 (613)
+...++.++.. .++++.+...+. + .+...+++++.|+++||+ ||||++..+.++..++.++++++.+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~-- 90 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT-- 90 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh--
Confidence 44455555543 445555544433 2 223346789999999996 9999999999999988888877621110
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHH
Q 007201 141 PSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTI 220 (613)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l 220 (613)
........+++.|+++|++.+...+...++++|.+|+++ |++..++.+.+..+|..+++.+
T Consensus 91 -------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~ 151 (394)
T TIGR00883 91 -------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALT 151 (394)
T ss_pred -------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHH
Confidence 000112357889999999999999999999999999988 9999999999999999999988
Q ss_pred HHHhc--------cccchhHHHHHHHHHHHHH
Q 007201 221 LGYFE--------DEGMWALGFWASAGSATMA 244 (613)
Q Consensus 221 ~g~l~--------~~~g~~~~f~~~~~~~~i~ 244 (613)
.+.+. +.++|+..|.+.++..+++
T Consensus 152 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 183 (394)
T TIGR00883 152 VLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG 183 (394)
T ss_pred HHHHHHhcCHHHhhccchHHHHHHHHHHHHHH
Confidence 76553 3568999988766554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-17 Score=172.42 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=118.2
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCC
Q 007201 68 NLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDE 147 (613)
Q Consensus 68 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (613)
.+...+.+++|.++.+++++.+.+.++..++.++.|+++||+ ||||++.++.++..++.+.+ .. +
T Consensus 21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~---~---------- 85 (355)
T TIGR00896 21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA---P---------- 85 (355)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh---c----------
Confidence 334456779999999999999999999999999999999996 99999999988777766655 33 2
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccc
Q 007201 148 GNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDE 227 (613)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~ 227 (613)
+.+.+++.|++.|++.+...+..+..+.|.+| ++ |+++.++++.+.++|..+++.+.+.+.+.
T Consensus 86 ----------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~ 148 (355)
T TIGR00896 86 ----------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQH 148 (355)
T ss_pred ----------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 26677889999999998888888888888886 45 89999999999999999999999888765
Q ss_pred c--chhHHHHHHHHHHH
Q 007201 228 G--MWALGFWASAGSAT 242 (613)
Q Consensus 228 ~--g~~~~f~~~~~~~~ 242 (613)
. +|+..|.+.++..+
T Consensus 149 ~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 149 SGGHWQQALAWWALPAL 165 (355)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 4 38888776654433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-16 Score=166.14 Aligned_cols=171 Identities=11% Similarity=0.049 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGL 127 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~ 127 (613)
++++++..+...+.+ ++...+...+++++|.++.+.+++.+.+.++..++.++.|++.||+ |||+++.++.+++.++.
T Consensus 5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 445555555555554 4444444566889999999999999999999999999999999996 99999999999999888
Q ss_pred HHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHH
Q 007201 128 VSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFY 207 (613)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~ 207 (613)
+++..+.. ..+++.+++.+++.|+|.|...+...+++.+..|+++ |++..++.+
T Consensus 83 ~l~~~~~~--------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 136 (410)
T TIGR00885 83 FLFWPAAE--------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQ 136 (410)
T ss_pred HHHHHHHh--------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHH
Confidence 77654421 1247788899999999999999999999999998888 889999999
Q ss_pred HHHhHHHHHHHHHHHHhcc--------------------------ccchhHHHHHHHHHHHHHHH
Q 007201 208 LALNLGSLFSNTILGYFED--------------------------EGMWALGFWASAGSATMALI 246 (613)
Q Consensus 208 ~~~~iG~~~gp~l~g~l~~--------------------------~~g~~~~f~~~~~~~~i~~~ 246 (613)
...++|..+||.+++.+.. ..+|+.+|++.++..++..+
T Consensus 137 ~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~ 201 (410)
T TIGR00885 137 SFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL 201 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887632 13699999877765554433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-15 Score=161.24 Aligned_cols=440 Identities=11% Similarity=0.022 Sum_probs=242.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh---ccCchHHHHHH-HH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDS---YWGRYKTCAIF-QA 121 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr---~~Grr~~i~~~-~~ 121 (613)
+.++.+....+..++++-...++++.|+ +++|.+...++.+..+..+...+.+|+.|+++|| .+||||.++++ .+
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~ 82 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence 4566677777777888777777788776 5799999999999999999999999999999994 14999998886 44
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
...++.++++++.....+. +|..+ ........+..+++..+..++.....+...++++|.+|+++++ ++.
T Consensus 83 ~~~~~l~ll~~~~~~~~~~----~~~~~--~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~ 152 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLF----GDNLD--KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRI 152 (477)
T ss_pred HHHHHHHHHHhCchhhhhc----ccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHH
Confidence 5555666666652211100 00000 0000111133444444556677778888899999999988611 357
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHh--cccc-------------chhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhh
Q 007201 202 FFSYFYLALNLGSLFSNTILGYF--EDEG-------------MWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLS 266 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l--~~~~-------------g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 266 (613)
+.++.+...++|+.+|+.++++. .+.. +.+..|++.+++.++..+...+..++.+..++++..
T Consensus 153 a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~-- 230 (477)
T TIGR01301 153 ANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI-- 230 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch--
Confidence 89999999999999999988864 2111 567888888777666666555544443211111000
Q ss_pred HHHHHHHHHHhhccccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 007201 267 RICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNP 346 (613)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (613)
+. -++.. ++. ... .+
T Consensus 231 ----------------------~~-~~~~~----------~~~--~~~------------------------------~~ 245 (477)
T TIGR01301 231 ----------------------NS-EAAPP----------SKH--GEE------------------------------AF 245 (477)
T ss_pred ----------------------hh-hcccc----------ccc--chh------------------------------hh
Confidence 00 00000 000 000 00
Q ss_pred ccccchhhhHH-HHHHHHHHHHHHHhHHHhhh---hhcccceeeeehhhc--ccCcccc--ccC-ccccccchhHHHHHH
Q 007201 347 WVLCTVTQVEE-VKCILRLLPIWLCTILYSVV---FTQMASLFVEQGAAM--KTNISTF--HIP-PASMSSFDILSVAAF 417 (613)
Q Consensus 347 ~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~--~~~-~~~~~~~~~v~~~~~ 417 (613)
++... +..++ -|.+.+++ +.+..-|+. +..+.+.+.-+...- +..-..+ ++. ..+....+.+...
T Consensus 246 ~~~i~-~~~~~mP~~m~~l~---~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~-- 319 (477)
T TIGR01301 246 FGELF-GAFKYLPRPVWILL---LVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG-- 319 (477)
T ss_pred HHHHH-HHHHHCCHHHHHHH---HHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH--
Confidence 00000 00011 01112222 222222222 122222211110000 0000000 000 1111222222222
Q ss_pred HHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccch-hHHHHHHHH
Q 007201 418 IFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLS-IFWQIPQYV 496 (613)
Q Consensus 418 ~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~i~~~~ 496 (613)
+...++.++.+|.++++ ..-.++.++.+++++...+......+.. +++..+.--..... .+..+..+.
T Consensus 320 --i~s~~l~~l~~~~g~~k--------~~~~~s~~~~~~~l~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 320 --ITSIGMEKLCRGWGAGK--------RLWGIVNIILAICLAATVLVTYVAKNSR-YYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred --HHHHHHHHHHHHhccch--------hHHHHHHHHHHHHHHHHHHHHhhhhccc-cccccccccCcchhhHHHHHHHHH
Confidence 33334444466665322 1336777778888777765542100000 00000000000111 255667778
Q ss_pred HHHHHHHhhhhhhhhhhhccCCc--hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHH
Q 007201 497 LIGASEVFMYVGQLEFFNGQAPD--GLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLA 574 (613)
Q Consensus 497 l~g~~~~~~~p~~~~~~~~~~P~--~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a 574 (613)
+.|+.....+...++++++..|+ +..|..||+.|++-.+.+.+..+..+.+.+..++ +....+.+.+
T Consensus 389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~-----------~~~~~~~~~g 457 (477)
T TIGR01301 389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG-----------GNLPAFVVGA 457 (477)
T ss_pred HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC-----------CCeeHHHHHH
Confidence 89999999999999999999995 4559999999999999999999888775544322 1124577777
Q ss_pred HHHHHHHHHHHHhhhhc
Q 007201 575 ALTTADLFIYIICARWY 591 (613)
Q Consensus 575 ~~~~~~~~~~~~~~~~~ 591 (613)
+.++++++..++..++.
T Consensus 458 v~~~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 458 VAAFVSGLLALILLPRP 474 (477)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 77888887777766654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-15 Score=163.21 Aligned_cols=150 Identities=11% Similarity=0.007 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhh----hccCch-HHHHHHHHHHH
Q 007201 50 LILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSD----SYWGRY-KTCAIFQAIFV 124 (613)
Q Consensus 50 ~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD----r~~Grr-~~i~~~~~l~~ 124 (613)
.--+..+..++.+..+..+++.|+++.+|+++..+|.+..+.-+...+..|+.|+++| | +||| +.++++.....
T Consensus 10 ~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~ 88 (473)
T PRK10429 10 SYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANS 88 (473)
T ss_pred hhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHH
Confidence 3445566677777788899999999999999999999999999999999999999999 5 4984 55555666656
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCC-CCCccccchhhhHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFD-EEDPKEGHSKIAFF 203 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p-~~~~~~~~~r~~~~ 203 (613)
++.+++... |.. ........+++..++..++.........++.+|..+ +++ |.+..
T Consensus 89 i~~~llf~~---p~~--------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~l~ 145 (473)
T PRK10429 89 VVLFLLFSA---HLF--------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQLV 145 (473)
T ss_pred HHHHHHHcC---CCC--------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHHHH
Confidence 665555332 210 001123444455556677888888888999999884 445 88988
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 007201 204 SYFYLALNLGSLFSNTILGY 223 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~ 223 (613)
++.....++|+.+.+.+...
T Consensus 146 ~~~~~~~~ig~~~~~~~~~~ 165 (473)
T PRK10429 146 PYPRFFASLAGFVTAGFTLP 165 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88777778876666555443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.7e-15 Score=160.70 Aligned_cols=156 Identities=15% Similarity=0.054 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc---cCchHHH-HHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSY---WGRYKTC-AIFQAIF 123 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grr~~i-~~~~~l~ 123 (613)
.+.-.+..+..+..+..+..+++.|+++.+|+++.++|.+.++..+...+..++.|+++||. +||||.. .++.+..
T Consensus 10 ~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~ 89 (448)
T PRK09848 10 IVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPL 89 (448)
T ss_pred HHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHH
Confidence 33344556667777777778888999999999999999999999999999999999999994 3777755 4555444
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
.+...++... |. ...........+....+.+++.+...+...++..+.....+ | |.+..
T Consensus 90 ~~~~~~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~---r~~~~ 148 (448)
T PRK09848 90 MIFSVLVFWV---PT-------------DWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--S---RARLG 148 (448)
T ss_pred HHHHHHHHhC---cC-------------CCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--H---HHHHH
Confidence 4443333222 11 00001123334445556777888888878887777765432 1 66776
Q ss_pred HHHHHH-----HhHHHHHHHHHHHHh
Q 007201 204 SYFYLA-----LNLGSLFSNTILGYF 224 (613)
Q Consensus 204 ~~~~~~-----~~iG~~~gp~l~g~l 224 (613)
++..++ .+++..++|.+.+..
T Consensus 149 ~~r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 149 AARGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 665443 345566666665543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-15 Score=163.01 Aligned_cols=176 Identities=13% Similarity=0.051 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc---cCchHH-HHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSY---WGRYKT-CAIFQAIF 123 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grr~~-i~~~~~l~ 123 (613)
-+.-.+..+..+..+..+..+++.|+++++|+++.+++.+..+..+...+..|+.|+++||. +||||- ++.+....
T Consensus 11 ~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~ 90 (444)
T PRK09669 11 KIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPF 90 (444)
T ss_pred HHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHH
Confidence 33344555666666677778899999999999999999999999999999999999999992 387554 55565666
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCC-CCccccchhhhH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDE-EDPKEGHSKIAF 202 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~-~~~~~~~~r~~~ 202 (613)
.+..+++... |.. ........+++...+.+.+.........++.+|+.++ ++ |.+.
T Consensus 91 ~i~~~l~f~~---p~~--------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e------R~~l 147 (444)
T PRK09669 91 GVVCLLTFYT---PDF--------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE------RHSL 147 (444)
T ss_pred HHHHHHHHhC---CCC--------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH------HHHH
Confidence 5555444333 220 0012244455555566666667777788999998854 34 8888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcc-------ccchhHHHHHHHHHHHHHHH
Q 007201 203 FSYFYLALNLGSLFSNTILGYFED-------EGMWALGFWASAGSATMALI 246 (613)
Q Consensus 203 ~~~~~~~~~iG~~~gp~l~g~l~~-------~~g~~~~f~~~~~~~~i~~~ 246 (613)
.++.....++|..+++.+...+.. ..+|+..+.+.+++..+..+
T Consensus 148 ~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 148 QSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 888888888888887765443322 23566666655554444433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-21 Score=209.93 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHH
Q 007201 82 ADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMAL 161 (613)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (613)
...++..+...++..++.+++|+++||+ |||++++++.++..++.++..++ +. ..+.+.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~---~~-----------------~~~~~~ 104 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFA---PS-----------------YNNFWM 104 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccc---cc-----------------cccccc
Confidence 3467888999999999999999999996 99999999999999999888887 21 014778
Q ss_pred HHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccc---cchhHHHHHHH
Q 007201 162 FYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDE---GMWALGFWASA 238 (613)
Q Consensus 162 ~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~---~g~~~~f~~~~ 238 (613)
+.++|++.|++.|+..+..+.++.|..|++. |+...++.+....+|..++..+.-.+.+. .+|+..+.+.+
T Consensus 105 ~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~ 178 (451)
T PF00083_consen 105 LLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGA 178 (451)
T ss_pred ccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999998 99999999999999998887665444332 34998888776
Q ss_pred HHHHHH
Q 007201 239 GSATMA 244 (613)
Q Consensus 239 ~~~~i~ 244 (613)
+..++.
T Consensus 179 ~~~l~~ 184 (451)
T PF00083_consen 179 IPSLLV 184 (451)
T ss_pred cccccc
Confidence 655443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=173.76 Aligned_cols=203 Identities=16% Similarity=0.177 Sum_probs=151.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007201 43 GTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAI 122 (613)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l 122 (613)
..+|.+++.+...++......++.......+.++++++..+.|++.+.+.+++.++.++.|+++||+ ||||.+.++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll 107 (633)
T TIGR00805 29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI 107 (633)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence 3445554555545555556666777777788889999999999999999999999999999999996 999999999999
Q ss_pred HHHHHHHHHhhhcccc-c---------------CCCCCCCCC-C---------CCCCCC--chhHHHHHHHHHHHHHhcc
Q 007201 123 FVIGLVSLSVSSYAFL-L---------------KPSGCGDEG-N---------PCGSHS--SLHMALFYLSIYLTALGNG 174 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~-~---------~~~~~~--~~~~~~~~~~~~l~g~g~g 174 (613)
+.++.+++++..++.. + .+.-|...+ + .|+... +..+..++++|+++|+|.+
T Consensus 108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~ 187 (633)
T TIGR00805 108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT 187 (633)
T ss_pred HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence 9999988877531110 0 011221000 0 011011 1235678899999999999
Q ss_pred ccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc----------------------chhH
Q 007201 175 GYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEG----------------------MWAL 232 (613)
Q Consensus 175 ~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~----------------------g~~~ 232 (613)
...+...+++.|.+|+++ |+...++++.+..+|.++|+++++++.+.+ +|+.
T Consensus 188 ~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl 261 (633)
T TIGR00805 188 PIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWI 261 (633)
T ss_pred cchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHH
Confidence 999999999999999998 999999999999999999999999876432 2788
Q ss_pred HHHHHHHHHHHHHHHHHHcC
Q 007201 233 GFWASAGSATMALILFLIGT 252 (613)
Q Consensus 233 ~f~~~~~~~~i~~~~~~~~~ 252 (613)
.|++.+++.++..+.+++..
T Consensus 262 ~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 262 GFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 88887776665555444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-14 Score=155.38 Aligned_cols=177 Identities=12% Similarity=-0.076 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHH--HHHHHHHHHHHHHHH-HHHhhhccCchHHHHHHHHHH-
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANN--VSKWTGTVYIFSLLG-AFLSDSYWGRYKTCAIFQAIF- 123 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~--~~~~~~~~~~~~~~~-G~lsDr~~Grr~~i~~~~~l~- 123 (613)
.+.++...+.+...+....+.+|.|++ +.|.|+++.|.. ..+..+..++..|+. ++++||+ ||||..++...+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 456777788888888888899999986 569999999997 456677777777776 6689995 9999976665332
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
......+.... +. .....++.....+.++..+...+....+..|..++++ ++...
T Consensus 81 ~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~ 135 (390)
T TIGR02718 81 SACLASLALVG--PD-----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGN 135 (390)
T ss_pred HHHHHHHHcCC--cc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHH
Confidence 22222222110 11 0112223333344445555555666667777766665 77777
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHc
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
+....+..+|..+|+.+.+++.+..||+..|++.+++.++..+..+..
T Consensus 136 ~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 136 AVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 788888899999999888899888999999998887766555554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-14 Score=159.36 Aligned_cols=383 Identities=15% Similarity=0.105 Sum_probs=217.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccC-----chHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWG-----RYKTCAIFQ 120 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G-----rr~~i~~~~ 120 (613)
....++....+.+.+. +.+...++.++++++|+++++.+...+...+...+-.+ .|.++||+ + ||+.++++.
T Consensus 26 ~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~ 102 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSG 102 (468)
T ss_pred hHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHH
Confidence 3445555577788888 88888899999999999999999888888888777554 99999996 7 777777776
Q ss_pred HHHH-HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchh
Q 007201 121 AIFV-IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSK 199 (613)
Q Consensus 121 ~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r 199 (613)
++.. +....++.. + .......+.+++.+++.+....+..+++.|..+ +++.. +
T Consensus 103 ~l~~~~~~~~l~~~---~-------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~---~ 156 (468)
T TIGR00788 103 LLGSAILYGLLPGK---V-------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA---G 156 (468)
T ss_pred HHHHHHHHHhcccc---c-------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc---C
Confidence 5542 222222111 1 112333346778888888888999999999998 44221 4
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhc
Q 007201 200 IAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKW 279 (613)
Q Consensus 200 ~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (613)
+...++.+.+.++|..+|+.++|.+.+.++|+..|++.+++.++..+...+.+++.....|.......
T Consensus 157 ~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~------------ 224 (468)
T TIGR00788 157 PSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLE------------ 224 (468)
T ss_pred CCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccch------------
Confidence 45666677778899999999999999888999999888776665544333332211001111000000
Q ss_pred cccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHH
Q 007201 280 KVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVK 359 (613)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 359 (613)
.+... . +. ...+.. + ..++.. ...-.+|
T Consensus 225 ------------~~~~~------------~--~~--~~~~~~-----~-----------------~~~~~l--~~~l~~~ 252 (468)
T TIGR00788 225 ------------MNMAL------------L--TL--GVLANV-----K-----------------VQILGL--RGAIQLL 252 (468)
T ss_pred ------------hhhhh------------h--hh--hHHHHH-----H-----------------HHHHHH--HHHHhcH
Confidence 00000 0 00 000000 0 000000 0000011
Q ss_pred HHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCC
Q 007201 360 CILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTR 439 (613)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~ 439 (613)
.+...+.+.+.. |..........+..+...+..+ ....+....+..+..+++..+.+++ .+|+
T Consensus 253 ~i~~~l~fifl~--~~~~~~~~~~~f~~~~~~lG~s----~~~~G~~~~~~~v~~i~g~~~~~~~----~~~~------- 315 (468)
T TIGR00788 253 EIAKPLIFIFLS--YANLPGASGSVFCATTQCLPGG----PSFSGMSKVVGNLGSLCGVGGYDRF----LKTF------- 315 (468)
T ss_pred HHHHHHHHHHHH--HhhcCCCCceeEEEEcccCCCC----cchhhhHHHHHHHHHHHHHHHHHHH----HhhC-------
Confidence 111111111110 2221111111222211111111 1122333444445555555555544 3343
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCc
Q 007201 440 GFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPD 519 (613)
Q Consensus 440 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~ 519 (613)
+..+.+.++.++.+++.+...... .+++.. ......+++....++.+++.++...+.+.++.+.+|+
T Consensus 316 --~~r~~l~~~~~l~~~~~~~~~~l~-~~~~~~----------~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~ 382 (468)
T TIGR00788 316 --PYRLLFGVTTLLYTLSSLFDLILV-KRWNLA----------FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPS 382 (468)
T ss_pred --CHHHHHHHHHHHHHHHHhCceeee-eccccc----------cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCC
Confidence 455566777777766654432111 011100 0001223445556777888888888889999999999
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 007201 520 GLKSFGSALCMTSISLGNYVSSLLVTIVMKIS 551 (613)
Q Consensus 520 ~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~ 551 (613)
+.+|+..|+.+...++|..+++.+.+.+.+..
T Consensus 383 ~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 383 GCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998888777643
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-15 Score=163.16 Aligned_cols=394 Identities=13% Similarity=0.086 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhh----hccCchHHHH-HHHHHHHHHHHH
Q 007201 55 QGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSD----SYWGRYKTCA-IFQAIFVIGLVS 129 (613)
Q Consensus 55 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD----r~~Grr~~i~-~~~~l~~~~~~~ 129 (613)
.+..+........+++.|+++.+|+++..++.+..+..+...+..|+.|+++| |+ ||||-.+ ++..+..++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l 88 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL 88 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence 35555666666778899999999999999999999999999999999999999 64 9776555 555666666665
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHH
Q 007201 130 LSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLA 209 (613)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~ 209 (613)
+.... | .+.........+.+..++..++.........++.+|..+.+++ |.+..++....
T Consensus 89 lf~~~--p-------------~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~ 148 (428)
T PF13347_consen 89 LFSPP--P-------------AGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIF 148 (428)
T ss_pred hhccc--c-------------chhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHH
Confidence 55330 1 1111112234456666667888888999999999999985431 88999998888
Q ss_pred HhHHHHHHHHHHHHhcccc-------chhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhcccc
Q 007201 210 LNLGSLFSNTILGYFEDEG-------MWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQ 282 (613)
Q Consensus 210 ~~iG~~~gp~l~g~l~~~~-------g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (613)
..+|..+...+.+.+.+.. +|+....+.++..++..++..+..|+.+.+.+...+
T Consensus 149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~------------------ 210 (428)
T PF13347_consen 149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK------------------ 210 (428)
T ss_pred HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc------------------
Confidence 8888876655555443221 577776666665555544444433331000000000
Q ss_pred ccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHH
Q 007201 283 ISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCIL 362 (613)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 362 (613)
. .+++.......++ |.+.
T Consensus 211 ------~-------------------------------------------------------~~~~~~~~~~~~n-r~~~ 228 (428)
T PF13347_consen 211 ------K-------------------------------------------------------ISLRDSLRSLFRN-RPFR 228 (428)
T ss_pred ------c-------------------------------------------------------cccccchhhhccc-chHH
Confidence 0 0000000000011 1111
Q ss_pred HHHHHHHHhHHHhhhhhcccceeeeehhh-cccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCC
Q 007201 363 RLLPIWLCTILYSVVFTQMASLFVEQGAA-MKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGF 441 (613)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~ 441 (613)
.++ ......+.......+...+.... +..+ + ..+.+.....+..++..|+..++ .+|+++|.
T Consensus 229 ~l~---~~~~~~~~~~~~~~~~~~y~~~~vl~~~----~-~~~~~~~~~~~~~~v~~~~~~~l----~~r~gk~~----- 291 (428)
T PF13347_consen 229 ILL---LAFFLQWLAFALMNTFLPYYFTYVLGNE----G-LISIFMLIFFVASIVGSPLWGRL----SKRFGKKK----- 291 (428)
T ss_pred HHH---HHHHHHHhhhhhhhhHHHHHHHHHhcCc----h-hhHHHHHHHHHHHHHHHHHHHHH----HHHcccee-----
Confidence 111 11111111111111111111111 1111 1 12333444556666777777665 66766554
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCC---
Q 007201 442 TELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAP--- 518 (613)
Q Consensus 442 ~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P--- 518 (613)
.+..+.++.+++.+++.+... .+.++..+..++.+++.+...+..+++..|..+
T Consensus 292 ----~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e 348 (428)
T PF13347_consen 292 ----VYIIGLLLAALGFLLLFFLGP-------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDE 348 (428)
T ss_pred ----ehhhhHHHHHHHHHHHHHHHh-------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHH
Confidence 667777777777777765531 255677788889999999988888899998876
Q ss_pred ----chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCC--CCcchhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 007201 519 ----DGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGN--LNKGHLDRFYFLLAALTTADLFIYIICARWYK 592 (613)
Q Consensus 519 ----~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~--~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~ 592 (613)
++..|..+|++++...++..+++.+.+.+.... |+.++. .++..........+.+-.+..++..++..+|+
T Consensus 349 ~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~---Gy~~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~ 425 (428)
T PF13347_consen 349 WKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV---GYDANAAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYP 425 (428)
T ss_pred HhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh---CcCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 355799999999999999999999999887654 333221 22223334444444444444444444455543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-15 Score=157.91 Aligned_cols=157 Identities=11% Similarity=-0.005 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHhCCChhh-HHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 007201 64 GVGVNLVLFLTRVVGQNNAD-AANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPS 142 (613)
Q Consensus 64 ~~~~~l~~yl~~~lg~~~~~-~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~ 142 (613)
...++...|+.+++|+++.+ .+.+.++++.++.++.+++|+++||+ |.|+++.++.+.+.+..+++.++.
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~-------- 113 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT-------- 113 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH--------
Confidence 34466777999999999999 99999999999999999999999996 999999999999999999988872
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHH
Q 007201 143 GCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILG 222 (613)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g 222 (613)
+...+.+.|++.|+++|... +...++..++|+++ |+++.++...+.++|.++++++++
T Consensus 114 ---------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~q 171 (511)
T TIGR00806 114 ---------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQ 171 (511)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37779999999999999999 99999999999998 999999999999999999999999
Q ss_pred HhccccchhHH---HHHHHHHHHHHHHHHHHcC
Q 007201 223 YFEDEGMWALG---FWASAGSATMALILFLIGT 252 (613)
Q Consensus 223 ~l~~~~g~~~~---f~~~~~~~~i~~~~~~~~~ 252 (613)
++. .+||+.- .+++.....+++++.+++.
T Consensus 172 ll~-s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 172 LLV-TLGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred HHH-hcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 954 5787743 4445555556666555543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=159.47 Aligned_cols=158 Identities=16% Similarity=0.084 Sum_probs=112.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchH
Q 007201 42 TGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVG-------QNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYK 114 (613)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg-------~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~ 114 (613)
.+|.+.+.+.-...|......+.+....+.+-..+.| +++...+.+..+..++..++|++.|+++|++ |||+
T Consensus 37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~ 115 (538)
T KOG0252|consen 37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKK 115 (538)
T ss_pred HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchh
Confidence 3445555555555555666666665555544433333 4566678888889999999999999999996 9999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCc
Q 007201 115 TCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSS-LHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDP 193 (613)
Q Consensus 115 ~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~ 193 (613)
++...+++.+++++++++.-. .++. .-..++...|+++|+|.|+-+|...+..+|..-++.
T Consensus 116 vYG~~liImIi~t~~~~~s~~-----------------~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~- 177 (538)
T KOG0252|consen 116 VYGKELIIMIICSALSGLSVG-----------------TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT- 177 (538)
T ss_pred hhhHHHHHHHHHHHHhccCCC-----------------CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc-
Confidence 999999999999986665421 1111 236788999999999999999999999999987777
Q ss_pred cccchhhhHHHH----HHHHHhHHHHHHHHHHHH
Q 007201 194 KEGHSKIAFFSY----FYLALNLGSLFSNTILGY 223 (613)
Q Consensus 194 ~~~~~r~~~~~~----~~~~~~iG~~~gp~l~g~ 223 (613)
||+..+. ..++.-.|++++-++.+.
T Consensus 178 -----RGa~iaavFa~Qg~GilaG~ivt~Iv~~~ 206 (538)
T KOG0252|consen 178 -----RGAFIAAVFAMQGFGILAGGIVALIVSAI 206 (538)
T ss_pred -----ccceeEEEEEecchhHhhccHHHHHHHHH
Confidence 7776665 444444444444444443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.6e-14 Score=155.55 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCC
Q 007201 67 VNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGD 146 (613)
Q Consensus 67 ~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (613)
.....++.+++|-+ ....|+.....+...+..++.|.|+|.+ |||..++.+.++..+|.+.++.+
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA------------- 128 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA------------- 128 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC-------------
Confidence 45567888889876 4467888889999999999999999995 99999999999999999998877
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhcc
Q 007201 147 EGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFED 226 (613)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~ 226 (613)
.+...++.+..+.|+|.|... .....++|..|.+. |..+.++.....-+....+|.++..+..
T Consensus 129 ----------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~ 191 (599)
T PF06609_consen 129 ----------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAA 191 (599)
T ss_pred ----------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhcc
Confidence 236679999999999976554 45666899999887 8777776665555555567777777766
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Q 007201 227 EGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 227 ~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
..+|||.|++.++...++++..++
T Consensus 192 ~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 192 HSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHH
Confidence 678999999988776666554433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-13 Score=142.61 Aligned_cols=151 Identities=14% Similarity=0.086 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGL 127 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~ 127 (613)
++.+.+..++..+.. -....+...+++.++++..|++++-..+..++.++.++.|++.+|+ |+|+.+++|..+++++.
T Consensus 15 ~v~~t~lFfl~G~~~-~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~ 92 (422)
T COG0738 15 FVLLTSLFFLWGFIT-CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGA 92 (422)
T ss_pred HHHHHHHHHHHHHHh-hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence 334444444444443 4445566778899999999999999999999999999999999996 99999999999999998
Q ss_pred HHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHH
Q 007201 128 VSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFY 207 (613)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~ 207 (613)
.++.-++. ...+..++++.++++.|.+....+.+++++...+++. -..-+++.+
T Consensus 93 ~lF~pAa~--------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q 146 (422)
T COG0738 93 ALFWPAAS--------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQ 146 (422)
T ss_pred HHHhhhhh--------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHH
Confidence 88765521 3457889999999999999999999999999999876 456677888
Q ss_pred HHHhHHHHHHHHHHHHhcc
Q 007201 208 LALNLGSLFSNTILGYFED 226 (613)
Q Consensus 208 ~~~~iG~~~gp~l~g~l~~ 226 (613)
....+|+.+||++++++..
T Consensus 147 ~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 147 AFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HhhhhHHHHHHHHHHHHHH
Confidence 8889999999999998766
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-13 Score=154.46 Aligned_cols=140 Identities=18% Similarity=0.162 Sum_probs=123.8
Q ss_pred HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCC
Q 007201 75 RVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSH 154 (613)
Q Consensus 75 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (613)
+..+.+.....+..+++.++..+++++.|+++||+ |||++++.+.++.+++.++.+++ +
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a---~----------------- 169 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA---P----------------- 169 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh---C-----------------
Confidence 45567778888999999999999999999999995 99999999999999998888887 3
Q ss_pred CchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHH
Q 007201 155 SSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGF 234 (613)
Q Consensus 155 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f 234 (613)
+.+.+++.|++.|++.++...+...+++|.+++++ |+.+..+ ......++.+++.+++++.. +||+.+
T Consensus 170 ---~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~ 237 (521)
T KOG0255|consen 170 ---NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLF 237 (521)
T ss_pred ---cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHH
Confidence 48889999999999999999999999999999999 9999999 88888888899999998876 899999
Q ss_pred HHHHHHHHHHHHH
Q 007201 235 WASAGSATMALIL 247 (613)
Q Consensus 235 ~~~~~~~~i~~~~ 247 (613)
++..+..++.++.
T Consensus 238 ~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 238 WIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHH
Confidence 9877666655544
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-13 Score=136.65 Aligned_cols=159 Identities=14% Similarity=0.053 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcc
Q 007201 57 LATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYA 136 (613)
Q Consensus 57 ~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~ 136 (613)
+.-.......+.+..-+....|.+..+...++.....+..+++...|.++|++ ||||.+.+......+..+.-..+
T Consensus 88 mad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s--- 163 (528)
T KOG0253|consen 88 MADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS--- 163 (528)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC---
Confidence 33344444555555666778899999999999999999999999999999996 99999988766655544443333
Q ss_pred cccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHH
Q 007201 137 FLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLF 216 (613)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~ 216 (613)
|+ +..+++.|.+.++|.|+ .|...++..|..|..+ |...+-.. ....+|.++
T Consensus 164 pn--------------------f~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ 215 (528)
T KOG0253|consen 164 PN--------------------FASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVF 215 (528)
T ss_pred CC--------------------eehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHH
Confidence 33 66788999999999998 8999999999999888 77777666 777899998
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 007201 217 SNTILGYFEDEGMWALGFWASAGSATMALIL 247 (613)
Q Consensus 217 gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~ 247 (613)
...+.=.+...+||++..+.+.....+...+
T Consensus 216 ea~law~vm~~~gwr~~l~~~~~pl~~~a~f 246 (528)
T KOG0253|consen 216 EALLAWGVMSNFGWRYLLFTSSTPLMFAARF 246 (528)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHH
Confidence 8877766667789998877766444333333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-14 Score=144.71 Aligned_cols=116 Identities=23% Similarity=0.199 Sum_probs=102.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhH
Q 007201 80 NNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHM 159 (613)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (613)
+..-+|.+-+.|.+..++.++..|.+|||+ |||+++.++.+..++...+.+.+ .++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S-----------------------~~F 121 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS-----------------------RNF 121 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH-----------------------HHH
Confidence 334578888999999999999999999998 99999999999888887777776 346
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhcc
Q 007201 160 ALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFED 226 (613)
Q Consensus 160 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~ 226 (613)
..++++|++.|+..| ..+..-++++|.+++++ |+.+++....+..+|..+||.++|++..
T Consensus 122 ~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 122 AAFVLARFLGGIFKG-NLSVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHhhhhccC-chHHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 667888999999877 45667899999999998 9999999999999999999999999987
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-13 Score=146.36 Aligned_cols=392 Identities=13% Similarity=0.078 Sum_probs=213.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH-
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV- 124 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~- 124 (613)
+..+......++..+++-...++.+.+++++.|++.++.|.+.++..+...+.+|+.|.++||+ |.||-+++...+..
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 4566666666666666667779999999999999999999999999999999999999999996 97665554433222
Q ss_pred -HHHHHHH-hhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 125 -IGLVSLS-VSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 125 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
.+.+... .. |-+ ..+ ++++..+.++..+....+..+.. |.+.++..+. .+-=
T Consensus 86 l~~pff~~v~~---pll----------------~~n---~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~sr~---~~fe 139 (412)
T PF01306_consen 86 LFGPFFIYVFG---PLL----------------QSN---FWLGAIIGGIYLGLVFNAGVPLS-EAYAERVSRR---NGFE 139 (412)
T ss_dssp TCHHHHHHTHH---HHH----------------HTT----HHHHHHTTTTTTTTTTTHHHHH-HHHHHHHHHH---HSS-
T ss_pred HHHHHHHHHHH---HHH----------------HHH---HHHHHHHHHHHHHHHHcccchHH-HHHHHHHHHH---hcCC
Confidence 2222221 11 110 001 22222222333333222222222 3333222100 1222
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhcccc
Q 007201 203 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQ 282 (613)
Q Consensus 203 ~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (613)
+|-..+...+|.+++..++|.+.+ .+.+..|++...+.++..++.+..+++.+++.+..+
T Consensus 140 YG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~------------------- 199 (412)
T PF01306_consen 140 YGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD------------------- 199 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SST-------------------
T ss_pred cchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc-------------------
Confidence 334566778999999999998875 456677887665544444444443322111110000
Q ss_pred ccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHH
Q 007201 283 ISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCIL 362 (613)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 362 (613)
. .. . + ++....|+ -.+..++++.+.
T Consensus 200 ---~-~~---------------~-~----------------------------------~~~~~~~~-~~~l~k~~~fw~ 224 (412)
T PF01306_consen 200 ---A-LG---------------A-K----------------------------------KDKVSLKD-VLSLFKMRNFWF 224 (412)
T ss_dssp ---T-SS---------------S-----------------------------------------HHH-HHHHTTSHHHHH
T ss_pred ---c-cc---------------c-C----------------------------------CCCCcHHH-HHHHhcchhHHH
Confidence 0 00 0 0 00000000 001112333333
Q ss_pred HHHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCC
Q 007201 363 RLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFT 442 (613)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~ 442 (613)
..+.+......|....+|.+.++..+. +.. +..+..+...+.+.++.=.+++. +..++.+|.+-
T Consensus 225 ~~l~v~g~~~~Y~vfdqqf~~y~~~~f---~~~----~~g~~~~G~l~s~~v~~E~~~m~-~~p~li~rig~-------- 288 (412)
T PF01306_consen 225 FVLFVIGVAAIYDVFDQQFPIYFASFF---QSA----GQGNQMYGYLWSVQVFLEALMMF-FSPWLINRIGA-------- 288 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS---SSH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-H--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---ccc----ccChhHHhHHHHHHHHHHHHHHH-HHHHHHHhcCh--------
Confidence 333333344456666666554332211 111 22233444444444443333333 23444667643
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhH
Q 007201 443 ELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLK 522 (613)
Q Consensus 443 ~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~r 522 (613)
...+.++..++++=.+..++. .+++++++.-.+-++-..+......-|+.+.+|++..
T Consensus 289 -k~~Lllag~i~~iRi~~~~~~---------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rls 346 (412)
T PF01306_consen 289 -KNLLLLAGVIMAIRIIGSGFA---------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLS 346 (412)
T ss_dssp -HHHHHHHHHHHHHHHHHHHT-----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGH
T ss_pred -HhHHHHHHHHHHHHHHHHhhh---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHH
Confidence 335555555555555555433 2555677777888888878888888999999999999
Q ss_pred HHHHHHH-HHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 007201 523 SFGSALC-MTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARW 590 (613)
Q Consensus 523 g~~~g~~-~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~ 590 (613)
++...+. .+..++|..+.+.+.|.+.+. -+++..|++.+.+.+...++.++..++
T Consensus 347 At~y~v~~~~~~~~~~~i~s~~~G~lyd~-------------~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 347 ATLYLVGFQFAKQIGIIILSPLAGYLYDR-------------IGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhHhh-------------cCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 9999885 578888988888888866542 245678898888877777777666554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.1e-13 Score=144.86 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh---ccCchHHHHH-HHHHHHH
Q 007201 50 LILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDS---YWGRYKTCAI-FQAIFVI 125 (613)
Q Consensus 50 ~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr---~~Grr~~i~~-~~~l~~~ 125 (613)
.--+..+..+..+..+..++..|+++.+|+++..+|.+..+.-+.-.+.-|+.|+++|| .+||||-.++ +.+...+
T Consensus 13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i 92 (460)
T PRK11462 13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI 92 (460)
T ss_pred hhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHH
Confidence 33455666677777778899999999999999999999999999999999999999997 2598766554 5456666
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
+.+++... |. . ........+++.-.+..++..+......++.+|..+..+ | |.+..++
T Consensus 93 ~~~llf~~---p~-------------~-s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~--e---Rt~l~s~ 150 (460)
T PRK11462 93 VCVLAYST---PD-------------L-SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT--Q---RISLQSW 150 (460)
T ss_pred HHHHHHhC---CC-------------C-CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH--H---HHHHHHH
Confidence 66555443 22 0 001113344555556677888888888899999987433 2 9999999
Q ss_pred HHHHHhHHHHHHHHHHHHh
Q 007201 206 FYLALNLGSLFSNTILGYF 224 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l 224 (613)
...+.++|..+++.+...+
T Consensus 151 r~~~~~iG~~~~~~~~~pl 169 (460)
T PRK11462 151 RFVLATAGGMLSTVLMMPL 169 (460)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999988887765544
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=149.72 Aligned_cols=148 Identities=12% Similarity=0.060 Sum_probs=133.5
Q ss_pred HhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCC
Q 007201 76 VVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHS 155 (613)
Q Consensus 76 ~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (613)
.++.++++.|++..+.++.+.+..++.|.+.||+ |+|-.+++|.+++...++++++.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg---------------------- 156 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG---------------------- 156 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence 4567788999999999999999999999999995 99999999999999999999987
Q ss_pred chhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHH
Q 007201 156 SLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFW 235 (613)
Q Consensus 156 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~ 235 (613)
.++++++++|.++|+|.++...+-.++++|.||++.. |++++|+.-....+|-.+||.++|.+.+..|++.+|.
T Consensus 157 -~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFl 230 (464)
T KOG3764|consen 157 -NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFL 230 (464)
T ss_pred -chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHH
Confidence 2377899999999999999999999999999998761 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcC
Q 007201 236 ASAGSATMALILFLIGT 252 (613)
Q Consensus 236 ~~~~~~~i~~~~~~~~~ 252 (613)
+.++..++...+-++..
T Consensus 231 VL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 231 VLAIVLLLDGALQLLVI 247 (464)
T ss_pred HHHHHHHHHHHHHHhee
Confidence 99887776666555543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=9e-13 Score=141.71 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 007201 52 LVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLS 131 (613)
Q Consensus 52 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~ 131 (613)
....++..+.+-...++++.|++ +.|+|..|.|.+.+...+..++.+++.|+++||+..+||.+.+..++..+..+...
T Consensus 8 s~~~f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~ 86 (400)
T PF03825_consen 8 SLMYFLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566788999997 57899999999999999999999999999999973467777776666555544444
Q ss_pred hhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCC
Q 007201 132 VSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFD 189 (613)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p 189 (613)
.. .+++.++...++..+......|...++.-+...
T Consensus 87 ~~-----------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~ 121 (400)
T PF03825_consen 87 FS-----------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG 121 (400)
T ss_pred Hh-----------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 33 125555566666677666666767677666654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-12 Score=133.67 Aligned_cols=344 Identities=14% Similarity=0.145 Sum_probs=221.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGL 127 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~ 127 (613)
+..++++.+--+-..-++ ..+..-+++++|++.+.+|.++++..++..++.+++.+|+.|+ |..+.+..+.++..+|.
T Consensus 14 i~gIvlia~NLR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~ 91 (395)
T COG2807 14 LAGIVLIAFNLRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGI 91 (395)
T ss_pred HHHHHHHHhccchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence 333444444444444333 3344567889999999999999999999999999999999996 99999999998888886
Q ss_pred HHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHH
Q 007201 128 VSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFY 207 (613)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~ 207 (613)
.+=... +...++.+-.+.|.|.+..+...++.+.+.||++ -+..+++|.
T Consensus 92 ~iR~~~------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs 140 (395)
T COG2807 92 LIRSLG------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYS 140 (395)
T ss_pred HHHhcc------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHH
Confidence 654332 2456778888899999999999999999999977 468899999
Q ss_pred HHHhHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccCC
Q 007201 208 LALNLGSLFSNTILGYFEDEG-MWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDD 286 (613)
Q Consensus 208 ~~~~iG~~~gp~l~g~l~~~~-g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (613)
...++|+++++.+...+.++. ||+..+.+=+...++++++++.-..|.+ .+..+.
T Consensus 141 ~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~--~~~~~~---------------------- 196 (395)
T COG2807 141 TSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQ--AASIAT---------------------- 196 (395)
T ss_pred HHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccc--cccccc----------------------
Confidence 999999999999998888776 7998888777777777666654321111 110000
Q ss_pred cccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHHH
Q 007201 287 DHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLP 366 (613)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 366 (613)
. ..+..+-||. +..+...+-
T Consensus 197 --~--------------------------------------------------~~~~~~vw~~--------~~aW~vtLf 216 (395)
T COG2807 197 --K--------------------------------------------------LVSVRKVWRS--------PLAWQVTLF 216 (395)
T ss_pred --c--------------------------------------------------cccccccccC--------chhHHHHHH
Confidence 0 0000112321 111222232
Q ss_pred HHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhh-hccCCCCCCCChhH
Q 007201 367 IWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVER-LTRKSGTRGFTELQ 445 (613)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r-~~~~~~~~~~~~~~ 445 (613)
+-+-+..||.+..+++..+.++.. +.+ ..+++-.+..+..+....+.-.+ .+| .++|+
T Consensus 217 mGlqS~~~Y~~~~WLP~ili~~G~--sa~------~aG~llsl~~l~~~~~~ll~P~l----a~R~~n~r~--------- 275 (395)
T COG2807 217 MGLQSLLYYIVIGWLPAILIDRGL--SAA------EAGSLLSLMQLAQLPTALLIPLL----ARRSKNQRP--------- 275 (395)
T ss_pred HHhhHHHHHHHHHHHHHHHHHcCC--CHH------HhhhHHHHHHHHHHHHHHHHHHH----HHHhcccch---------
Confidence 345567788888888876655432 211 12222222222222222222222 122 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCC-chhHHH
Q 007201 446 RMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAP-DGLKSF 524 (613)
Q Consensus 446 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P-~~~rg~ 524 (613)
......+++.++++-+.+.+ ....++| .+++|+|.+..+|..+.++...++ ++..+.
T Consensus 276 ~~~~~~~~~l~G~~G~~~~P------------------~~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~ 333 (395)
T COG2807 276 LVVLALLLMLVGLVGLLLAP------------------GQLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAA 333 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhh------------------hhHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHH
Confidence 33333334444443333332 1223333 478999999999999999987765 455567
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 007201 525 GSALCMTSISLGNYVSSLLVTIVMKIS 551 (613)
Q Consensus 525 ~~g~~~~~~~lg~~i~~~l~~~i~~~~ 551 (613)
..|+....+.+=..+||.++|.+.+.+
T Consensus 334 LSgmaQg~GYllAa~GP~l~G~lhDa~ 360 (395)
T COG2807 334 LSGMAQGVGYLLAAFGPWLFGFLHDAT 360 (395)
T ss_pred HHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence 777777777777888999999888766
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-13 Score=150.65 Aligned_cols=424 Identities=14% Similarity=0.085 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 49 ILILVNQGLATLAFFGVGVNL---VLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 49 ~~l~~~~~~~~~~~y~~~~~l---~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|++++..|+.+...+++.... -..+.++++.+..+++|+.++...+..+..|+.+.+.||+ |.|++.++|.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence 455555666666666665433 3455778999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHH-HHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFY-LSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
|.++.++++ +.+.++ ..-++.|+|.|+.+......+...|.++ |+.+.+
T Consensus 124 g~~lssF~~-----------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~G 173 (509)
T KOG2504|consen 124 GLLLSSFAT-----------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATG 173 (509)
T ss_pred HHHHHHHHh-----------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHh
Confidence 999998883 244444 4455679999999999999999877544 889999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhcccccc
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQIS 284 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (613)
+...+..+|..+=|.+..++.+.+||+..+++.+.+.+-..+.....++.....+|.. ..+ .+......+
T Consensus 174 ia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~--~~~--------~~~~~~~~~ 243 (509)
T KOG2504|consen 174 IAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNE--EKD--------LRNSAASVE 243 (509)
T ss_pred hhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchh--hhh--------hcccccccc
Confidence 9999999999999999999999999999998887776655555555555332222220 000 000000000
Q ss_pred CCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCcccc-c---hhhhHHHHH
Q 007201 285 DDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLC-T---VTQVEEVKC 360 (613)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~k~ 360 (613)
..+.. .+.. .+. ++....+ ..-.........+ ++.+..+-+.. . .+..++++.
T Consensus 244 ~~~~~---~~~~---~~~----~~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~d~~ll~~~~f 300 (509)
T KOG2504|consen 244 STPKP---VELR---ISE----RDSGLKK-LSLSNLATLKRGP------------DKWRNSPLQAFLSMLDLSLLKDPKF 300 (509)
T ss_pred ccccc---cccc---ccc----CCCCCCc-ccccchhhhhhCC------------ccccccchhhhhhhhhHHHHcCchH
Confidence 00000 0000 000 0000000 0000000000000 00000011100 0 111222222
Q ss_pred HHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCC
Q 007201 361 ILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRG 440 (613)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~ 440 (613)
+...+...+....+.......+ ........+ .-..+....+..+.-+++-++.+.+. ++-.
T Consensus 301 l~~~~~~~~~~~g~~~p~~~l~----~~~~~~g~~----~~~aa~l~Siigi~~i~gRi~~G~la----D~~~------- 361 (509)
T KOG2504|consen 301 LLLALSNLFAYLGFNVPFVYLP----SYAKSLGLS----SNDAAFLLSIIGVSDIIGRIILGLLA----DKPG------- 361 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHhhcCCC----hhhhHHHHHHHHHhhhhhhhhhhhhc----Cccc-------
Confidence 2212222222222222222111 111111111 11223333334444445545555442 2211
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCch
Q 007201 441 FTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDG 520 (613)
Q Consensus 441 ~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~ 520 (613)
........+++++.+++.++..+. .+.+.++...++.|+..+.........+.+..+.+
T Consensus 362 ~~~~~~~~~~ll~~gl~~~~~p~~---------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~ 420 (509)
T KOG2504|consen 362 IRALVLFLLTLLIAGLARLFLPFA---------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE 420 (509)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 124445566777777776555433 24456677778888888877776667888899999
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 007201 521 LKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICA 588 (613)
Q Consensus 521 ~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~ 588 (613)
.-..+.|+..+...++..+||.+.+.+.+.+ +.|+..|...++..+++....++..
T Consensus 421 ~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t------------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 421 KLSNAYGLLLLFQGIGALVGPPIAGLLYDIT------------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hcchHHHHHHHHhHHHHHcCcccceeeeecc------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 8999999999999999999999988655443 2245567777777666665554443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.1e-13 Score=144.53 Aligned_cols=150 Identities=11% Similarity=0.064 Sum_probs=124.1
Q ss_pred HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCC
Q 007201 75 RVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSH 154 (613)
Q Consensus 75 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (613)
+++++.-.+.+.+.+++.+++.++.+++|+|.||+ .-.+.+....+.+.+..++....
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~--------------------- 131 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV--------------------- 131 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 56777888899999999999999999999999996 87776666665555444333333
Q ss_pred CchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhc------ccc
Q 007201 155 SSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFE------DEG 228 (613)
Q Consensus 155 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~------~~~ 228 (613)
.+.+.+++.|++.|+.++..+|+...+++.+|.+++ |+.-+++++.+.++|.++|.+++..+. ...
T Consensus 132 --~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~ 203 (495)
T KOG2533|consen 132 --HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA 203 (495)
T ss_pred --hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence 347779999999999999999999999999999999 999999999999999999999988753 346
Q ss_pred chhHHHHHHHHHHHHHHHHHHHcCCc
Q 007201 229 MWALGFWASAGSATMALILFLIGTPR 254 (613)
Q Consensus 229 g~~~~f~~~~~~~~i~~~~~~~~~~~ 254 (613)
||++.|.+.+++.++..++.++..|.
T Consensus 204 gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 204 GWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred CceeehhHHHHHHHHHHheEEEEecC
Confidence 89999999998777666665555544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-11 Score=133.32 Aligned_cols=372 Identities=13% Similarity=0.093 Sum_probs=226.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc---cCchH-HHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSY---WGRYK-TCAIFQA 121 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grr~-~i~~~~~ 121 (613)
|.-+.--...+..++.+-.+..++..|.++..|+++..+|.+..+.=+.-.+.-|+.|.++||. +||+| -++++.+
T Consensus 12 ~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~i 91 (467)
T COG2211 12 KEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAI 91 (467)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhH
Confidence 3444555667777788888889999999999999999999999999999999999999999983 48755 5555556
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
.+.+..+++..+ |. ...+......++.-.+.+++.........++.+++.++.+ | |.+
T Consensus 92 p~~i~~~l~F~~---p~--------------~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~--E---R~~ 149 (467)
T COG2211 92 PFAIVAVLLFIT---PD--------------FSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ--E---RAS 149 (467)
T ss_pred HHHHHHHHHHcC---CC--------------cccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH--H---HHH
Confidence 667666666655 21 0012234455566677889999999999999999986543 2 889
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhcc-------ccchhHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCCChhhHHHHHHH
Q 007201 202 FFSYFYLALNLGSLFSNTILGYFED-------EGMWALGFWASAGSATMALILFLIGTPR-YRHFKPTGNPLSRICQVVV 273 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l~~-------~~g~~~~f~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 273 (613)
..++...+.++|..+...+.+.+.. ..||+....+.+++..+..+..++..++ ..+..+..+
T Consensus 150 l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~---------- 219 (467)
T COG2211 150 LTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT---------- 219 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc----------
Confidence 9999999999997776655554432 2356655554444444443333332221 111111100
Q ss_pred HHHhhccccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchh
Q 007201 274 AATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVT 353 (613)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (613)
+. . .++++.. .
T Consensus 220 ---------------~~-----------------------~------------------------------~~~~~~~-~ 230 (467)
T COG2211 220 ---------------GV-----------------------K------------------------------LKLKDSF-L 230 (467)
T ss_pred ---------------cc-----------------------c------------------------------ccHHHHH-H
Confidence 00 0 0000000 0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhc
Q 007201 354 QVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLT 433 (613)
Q Consensus 354 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~ 433 (613)
.....|.++..+...++.............++... .++.. +..+...........+++.++..++ .+|++
T Consensus 231 ~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y--~lg~~----~l~~~~~~~~~~~~~l~~~~~~p~L----~~~~g 300 (467)
T COG2211 231 LIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTY--VLGDP----ELFAYLLLLASGAGLLIGLILWPRL----VKKFG 300 (467)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEE--EcCCh----HHHHHHHHHHHHHHHHHHHHhHHHH----HHHhc
Confidence 00011222222222222222222222222222221 11211 2222222223333333334444444 55654
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhh
Q 007201 434 RKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFF 513 (613)
Q Consensus 434 ~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~ 513 (613)
+| +.+.+|.++..++.+.+.+.. ..+.++++...++.+++.+...+..++++
T Consensus 301 kk---------~~~~~~~~~~~i~~~~~~f~~-------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~ 352 (467)
T COG2211 301 KK---------KLFLIGLLLLAVGYLLLYFTP-------------------AGSVVLIVVALIIAGVGTGIANPLPWAMV 352 (467)
T ss_pred hH---------HHHHHHHHHHHHHHHHHHhhc-------------------CcchHHHHHHHHHHHHHhhccccccHHHh
Confidence 43 367788888888887776653 22445666677888999999999999998
Q ss_pred hccCC-------chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCC
Q 007201 514 NGQAP-------DGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPG 559 (613)
Q Consensus 514 ~~~~P-------~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~ 559 (613)
.+... ++..|...|..++..-+|..++..+.+.+.... |+.++
T Consensus 353 ~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~---Gyv~~ 402 (467)
T COG2211 353 ADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI---GYVPN 402 (467)
T ss_pred cchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCC
Confidence 87543 466789999999999999999999999887654 45543
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-11 Score=133.72 Aligned_cols=174 Identities=14% Similarity=0.067 Sum_probs=125.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
|..+...+++..+ ....|++..+. ..+++++|++..+.+++.++... ..++++++|+++||+ |||+++.++.+++.
T Consensus 27 w~~lva~~~~~~~-~g~~y~fsv~s-~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~ll~~ 102 (591)
T PTZ00207 27 FALLVLGAFCSIC-TSFMYAFNLIS-GAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSMTVFC 102 (591)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 3334333333333 34445555444 46788999999999988876443 345677899999996 99999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
++.++++++.. .. ...+.+.+++.|++.|+|.+...+.....+.++|| ++ ||++.+
T Consensus 103 iG~ll~ala~~-~~----------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~G 158 (591)
T PTZ00207 103 LGTLLFALTFQ-EV----------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVA 158 (591)
T ss_pred HHHHHHHHHhc-cc----------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHH
Confidence 99998888621 00 01247888999999999999888888899999997 45 999999
Q ss_pred HHHHHHhHHHHH-HHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q 007201 205 YFYLALNLGSLF-SNTILGYFEDEGMWALGFWASAGSATMALILF 248 (613)
Q Consensus 205 ~~~~~~~iG~~~-gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~ 248 (613)
+.....++|+++ +++..+++. .+|+..|++.++..++..++.
T Consensus 159 i~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 159 IMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHH
Confidence 999999999975 555555554 357766776665554443333
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.1e-11 Score=130.11 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHH
Q 007201 491 QIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFY 570 (613)
Q Consensus 491 ~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f 570 (613)
+.+..++.|+..+...+..-++..++.|++..+...|++.+....+..+||++++.+...+++ ...-+
T Consensus 383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~------------~r~g~ 450 (477)
T PF11700_consen 383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS------------QRYGF 450 (477)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------chhHH
Confidence 334446788888888999999999999999999999999999999999999999999877632 23446
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 007201 571 FLLAALTTADLFIYIICA 588 (613)
Q Consensus 571 ~~~a~~~~~~~~~~~~~~ 588 (613)
..+.++.++++++++.+.
T Consensus 451 ~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 451 LFLLVLFLIGLILLFFVD 468 (477)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 666666666666664433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.5e-13 Score=144.24 Aligned_cols=184 Identities=13% Similarity=-0.002 Sum_probs=133.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007201 42 TGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA 121 (613)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~ 121 (613)
.++++.........++..+.+|....+.+.|+++.+|++......+..+..+...++.++.|+++||+ ||||++..+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~ 324 (438)
T PRK09952 246 LRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGAL 324 (438)
T ss_pred HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHH
Confidence 34445454445556677788899999999999999999988766666666777888899999999996 99999988876
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
+..++.+.+..... . ......+++..++.+++.+...+..+++++|.+|.+. |++
T Consensus 325 ~~~~~~~~~~~~~~--~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~t 379 (438)
T PRK09952 325 IGTLSAFPFFMALE--A-----------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYS 379 (438)
T ss_pred HHHHHHHHHHHHHH--c-----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHH
Confidence 65554433322210 0 0123334445556677777778888999999999988 999
Q ss_pred HHHHH-HHHHhHHHHHHHHHHHHhcccc--chhHHHHHHHHHHHHHHHHHHHc
Q 007201 202 FFSYF-YLALNLGSLFSNTILGYFEDEG--MWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 202 ~~~~~-~~~~~iG~~~gp~l~g~l~~~~--g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
+.++. ..+..+|++++|.+.+++.+.. +|..++.+.+++.+++.+..+..
T Consensus 380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 99984 4455689999999999987643 47777777777777666665544
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=145.11 Aligned_cols=181 Identities=9% Similarity=0.071 Sum_probs=131.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007201 43 GTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAI 122 (613)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l 122 (613)
++++.+...+...++....+|++..++|.|+++.+|++..+.+.......++..++.+++|+++||+ |||+++.++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~ 325 (490)
T PRK10642 247 KHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVA 325 (490)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 3455555555555667788999999999999989999998888888888888999999999999996 999999888765
Q ss_pred HHHHHHH-HHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 123 FVIGLVS-LSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 123 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
..++... +.... ..+...+++++++.+++.+...+....++.|.+|++. |++
T Consensus 326 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~ 378 (490)
T PRK10642 326 LFVLAIPAFILIN---------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYS 378 (490)
T ss_pred HHHHHHHHHHHHh---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chH
Confidence 4433322 22221 0124556677777777776666777888899999999 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHHHHHc
Q 007201 202 FFSYFYLALNLGSLFSNTILGYFEDEG-MWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l~~~~-g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
++++.+....+++.++|.+.+++.+.. +|+.++++..+..+++++..++.
T Consensus 379 ~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 379 ALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 999855556677888999999887654 46656555544444444444443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-13 Score=140.83 Aligned_cols=181 Identities=20% Similarity=0.170 Sum_probs=146.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHHHHHHHH-H
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYW-GRYKTCAIFQA-I 122 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~-Grr~~i~~~~~-l 122 (613)
.|.+|.+++..++.-..-|++..|.|.|+.|+.|+|..++++..+.+-.++..++++.||+|||++ |||....+.++ +
T Consensus 251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~ 330 (448)
T COG2271 251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL 330 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999999999999999999988 77765555444 3
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
..++...+.++ |+ .+..+..+..+..|+..-+..-.+.....|..|++. -|++
T Consensus 331 i~~~~~~~w~~---~~------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA 383 (448)
T COG2271 331 ITASLVLYWLA---PN------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTA 383 (448)
T ss_pred HHHHHHHHHcC---CC------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccch
Confidence 34444445444 32 245666666677776666556666677789888888 8899
Q ss_pred HHHHHHHHhH-HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcC
Q 007201 203 FSYFYLALNL-GSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGT 252 (613)
Q Consensus 203 ~~~~~~~~~i-G~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 252 (613)
.|+......+ |+.++....|++.+.+||...|.+..+..+++.+++....
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9998888888 9999999999999989999998887777766666555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-10 Score=120.13 Aligned_cols=379 Identities=15% Similarity=0.078 Sum_probs=218.0
Q ss_pred HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccC-----chHHHHH-HHHHHHHHHHHHHhhhcccccCCCCCCCC
Q 007201 74 TRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWG-----RYKTCAI-FQAIFVIGLVSLSVSSYAFLLKPSGCGDE 147 (613)
Q Consensus 74 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G-----rr~~i~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (613)
..|++++..-.+..+....+.+. ..+..|+.||+. + ||.-+++ |.++...+.....++.. ++...
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~---~l~~~---- 77 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALL---LLAES---- 77 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHH---HHccc----
Confidence 45788988888888888877766 588999999996 6 5544444 45555555555444311 11000
Q ss_pred CCCCCC-CCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhcc
Q 007201 148 GNPCGS-HSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFED 226 (613)
Q Consensus 148 ~~~~~~-~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~ 226 (613)
..+++ +.........++..+.|+|.+....+..++++|..|+++ |++..++.+...-+|.+++..+.+.+.+
T Consensus 78 -~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 78 -GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred -ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 00001 111122234445556788888888999999999999999 9999999999999999999999998877
Q ss_pred ccchhHHH-HHHH---HHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccCCcccchhhhcccccccc
Q 007201 227 EGMWALGF-WASA---GSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTS 302 (613)
Q Consensus 227 ~~g~~~~f-~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (613)
.++..-.. .+.. +...+..+..+-..++.++..+.. +++
T Consensus 151 ~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~---------------------~~~---------------- 193 (403)
T PF03209_consen 151 PFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAA---------------------ERP---------------- 193 (403)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCC---------------------CCC----------------
Confidence 66532221 1111 112222222222222221111000 000
Q ss_pred cCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhHHHhhhhhccc
Q 007201 303 QNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMA 382 (613)
Q Consensus 303 ~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 382 (613)
+..+.+ .|+... .+++.......+++....|.+..--+.
T Consensus 194 -----------~~~f~~--------------------------a~~~~~----~~~~a~~f~~fl~l~t~a~~~QD~iLE 232 (403)
T PF03209_consen 194 -----------RPPFRE--------------------------AWRQVW----ASPQARRFFVFLFLGTLAFFMQDVILE 232 (403)
T ss_pred -----------CccHHH--------------------------HHHHHH----hCCChhHHHHHHHHHHHHHHhhHHHcC
Confidence 000000 011000 011111112334455556666554443
Q ss_pred ceeeeehhhcccCcccccc-CccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 007201 383 SLFVEQGAAMKTNISTFHI-PPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISA 461 (613)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~ 461 (613)
.+ -+ +.+++.+ .+..++.+-....++...+.+++.. +|. .+.+...+|....++++.++
T Consensus 233 Py---gg-----~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~~---------~~~~~a~~G~~~~~~~f~li 292 (403)
T PF03209_consen 233 PY---GG-----EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLS---RRL---------GKKRTAALGCLLGALAFALI 292 (403)
T ss_pred Cc---hh-----HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC---------CchHHHHHHHHHHHHHHHHH
Confidence 32 11 1111111 2334455556667777777776542 222 22234456777777776665
Q ss_pred HHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHH
Q 007201 462 GVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSS 541 (613)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~ 541 (613)
..... .-+.+.+....+++|++.++......+...+..+++..|+.+|+|...+.++..++.
T Consensus 293 i~a~~------------------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~ 354 (403)
T PF03209_consen 293 ILAGP------------------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGT 354 (403)
T ss_pred HHHHh------------------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 54421 123556778889999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 007201 542 LLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIIC 587 (613)
Q Consensus 542 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~ 587 (613)
.+.+.+.+.... +...+ ....|..+|.+=++..++++.+...+
T Consensus 355 ~~GG~~~D~~~~--~~~~~-~~~aY~~VF~lEa~ll~~a~~ll~~l 397 (403)
T PF03209_consen 355 FLGGALRDLVRA--LFGNS-PALAYGVVFALEAVLLLAALVLLGRL 397 (403)
T ss_pred HHHHHHHHHHHH--hccCC-cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888877654321 11100 11245556666666666665555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=140.27 Aligned_cols=193 Identities=20% Similarity=0.156 Sum_probs=146.6
Q ss_pred CCceecccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCc-
Q 007201 35 RPAIKRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTR-VVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGR- 112 (613)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Gr- 112 (613)
....+..+.+||++++..+..++....++.+....-.|+++ +.+.+++-.|+++++..++..++.+..|+.+.|. |.
T Consensus 23 ~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~ 101 (488)
T KOG2325|consen 23 LSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSV 101 (488)
T ss_pred cccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCc
Confidence 34456667899999999999999888887777777788874 3677778889999999999999999999999996 75
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCC
Q 007201 113 YKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEED 192 (613)
Q Consensus 113 r~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~ 192 (613)
|+-++.+.++.+++.+++......|+ ...+.++++|++.|+|.| ..+..=+++++....++
T Consensus 102 k~Pli~s~ii~~~g~llY~~l~~~~~------------------~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~d 162 (488)
T KOG2325|consen 102 KKPLIVSFLIAIIGNLLYLALAYVPN------------------GVKYLMLVARILTGVGVG-NFAVLRAYIADASTVED 162 (488)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhccc------------------chHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccc
Confidence 66677788899999988855544444 257889999999999866 45667789999888788
Q ss_pred ccccchhhhHHHHHHHHHhHHHHHHHHHHHHhc----cc---------cchhHHHHHHHHHHHHHHHHHHHcCC
Q 007201 193 PKEGHSKIAFFSYFYLALNLGSLFSNTILGYFE----DE---------GMWALGFWASAGSATMALILFLIGTP 253 (613)
Q Consensus 193 ~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~----~~---------~g~~~~f~~~~~~~~i~~~~~~~~~~ 253 (613)
|.++++....+..+|..+||.+...+. .. .-|..+-|+.++..++..+++.+..+
T Consensus 163 ------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 163 ------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK 230 (488)
T ss_pred ------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence 889999877777777777777654432 11 12556666676666666555555433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.4e-12 Score=135.82 Aligned_cols=175 Identities=13% Similarity=0.035 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+..+..+...+.....++.+..++|.|+++++|+++.+++.+.+...++..++.+++|+++||+ |||+.+..+.+...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~ 294 (393)
T PRK15011 216 RDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVC 294 (393)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 3333333333444445556667899999999999999999988887788888999999999996 999988776655444
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
....+... .+.+.+++.+++.+++.|...+..+.+..|.+|+ + |+++.++
T Consensus 295 ~~~~~~~~-----------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~ 344 (393)
T PRK15011 295 FYAGMLMA-----------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTL 344 (393)
T ss_pred HHHHHHHH-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHH
Confidence 43333222 1244455666766666666666667778888874 4 7889999
Q ss_pred HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHc
Q 007201 206 FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
++...++|..++|.++|++.+.+||+..|++.+++.+++++..+..
T Consensus 345 ~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 345 YTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 8888999999999999999998899999988777776666655543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.6e-11 Score=124.73 Aligned_cols=384 Identities=10% Similarity=0.016 Sum_probs=213.1
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCC
Q 007201 70 VLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGN 149 (613)
Q Consensus 70 ~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (613)
..|..+.+| +...+-|...++.+.+....+.+-|+.|++ |-|.+..++..+..+|..+=.++ +.|.+.+
T Consensus 68 ~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~is-s~p~v~~-------- 136 (480)
T KOG2563|consen 68 NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLIS-SLPFVPP-------- 136 (480)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhc-cCccccc--------
Confidence 356666777 666778999999999999999999999995 99999999999999987765544 2232110
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc-
Q 007201 150 PCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEG- 228 (613)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~- 228 (613)
.......+.+..+.+..+-.....-+-+.+-|||+++ |..+..+-.++..+|.++|.++...+..+.
T Consensus 137 ------~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~~~~ 204 (480)
T KOG2563|consen 137 ------LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVPSSK 204 (480)
T ss_pred ------cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecCCCC
Confidence 1111255566666666665555555566788999999 999999988888899888887777665433
Q ss_pred -----chhHH--HHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccCCcccchhhhccccccc
Q 007201 229 -----MWALG--FWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQT 301 (613)
Q Consensus 229 -----g~~~~--f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (613)
.|... |+....+..+.++...+.+++.++.+|....... .
T Consensus 205 ~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~-------------------------~-------- 251 (480)
T KOG2563|consen 205 DSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL-------------------------Q-------- 251 (480)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh-------------------------h--------
Confidence 35432 3323333333333333333333332322110000 0
Q ss_pred ccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhHHHhhhhhcc
Q 007201 302 SQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQM 381 (613)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 381 (613)
+ .++...-.+...+++.++..+...+...+|+.....+
T Consensus 252 ------------~------------------------------~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l 289 (480)
T KOG2563|consen 252 ------------D------------------------------ASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLL 289 (480)
T ss_pred ------------c------------------------------CcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHh
Confidence 0 0000000011122222232232333333344433322
Q ss_pred cceeeeehhhcccCcccc-ccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHH
Q 007201 382 ASLFVEQGAAMKTNISTF-HIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMIS 460 (613)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~ 460 (613)
.. .+..+ ++ +...+.+.....+..++.+.+.+.+. +|. ++++...++.....+... +.+
T Consensus 290 ~~-------~l~~s--gY~~~~aG~ig~l~iv~Gmlga~~~gii~----Dkt------k~fk~~~~v~~~~~~v~~-~~l 349 (480)
T KOG2563|consen 290 NL-------ALCPS--GYEGVFAGYIGALMIVAGMLGALASGIIA----DKT------KKFKLTTLVLYLFALVGT-LML 349 (480)
T ss_pred hh-------ccccc--cCCccccchhHHHHHHHHHHHHHHHHhhh----hhh------hhHHHHHHHHHHHHHHHH-HHH
Confidence 21 00111 11 23445565565666666666777664 342 222343333322222211 222
Q ss_pred HHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHH
Q 007201 461 AGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVS 540 (613)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~ 540 (613)
..+. ...-..++......+.|+.+....|...|+..|..=|...++..|+.+.++.+-+++-
T Consensus 350 ~~~t------------------~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~ 411 (480)
T KOG2563|consen 350 LTCT------------------LFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVIL 411 (480)
T ss_pred HHhh------------------ccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHH
Confidence 2211 1111223445556677888888889999999998777888999999998888877777
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 007201 541 SLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFEE 598 (613)
Q Consensus 541 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 598 (613)
..+.+...+....++|- ...=+.+...+++.+++.+++.+.+++++.|.
T Consensus 412 ~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~ 460 (480)
T KOG2563|consen 412 VFIMGILAEDLGPPGNT---------FPANIFLTVSALLGAILVAFFRPDYRRLRAEA 460 (480)
T ss_pred HHHHHHHhhccCCCCCC---------ccchhHhHHHHHHHHHHHhhhhhhHHhHhhhh
Confidence 66666554322111111 00113335556666677777776666655553
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-12 Score=139.06 Aligned_cols=178 Identities=16% Similarity=0.138 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 007201 49 ILILVNQGLATLAFFGVGVNLVLFLTRVVGQNN--------ADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQ 120 (613)
Q Consensus 49 ~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~--------~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~ 120 (613)
+..++..++..........+.+.|+.+ .|.++ ++.+...++..+...++.++.|+++||+ |||+++.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~ 288 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSL 288 (418)
T ss_pred eeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence 334444444444444555677888764 55443 5668888888999999999999999996 9999999998
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhh
Q 007201 121 AIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKI 200 (613)
Q Consensus 121 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~ 200 (613)
++..++...+.... +. ....+.+++..++.+++.+...+....+++|.+|+++ |+
T Consensus 289 ~~~~v~~~l~~~~~--~~-----------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g 343 (418)
T TIGR00889 289 VAWALRFGFFAYGD--PE-----------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RA 343 (418)
T ss_pred HHHHHHHHHHHHcC--cc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HH
Confidence 88877765555431 00 0124556677888999988888888999999999988 99
Q ss_pred hHHHHHH-HHHhHHHHHHHHHHHHhccc------cchhHHHHHHHHHHHHHHHHHHHcCC
Q 007201 201 AFFSYFY-LALNLGSLFSNTILGYFEDE------GMWALGFWASAGSATMALILFLIGTP 253 (613)
Q Consensus 201 ~~~~~~~-~~~~iG~~~gp~l~g~l~~~------~g~~~~f~~~~~~~~i~~~~~~~~~~ 253 (613)
+++++.+ ...++|..+||.++|++.+. +||+..|.+.+++.+++.+..++..+
T Consensus 344 ~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 344 SAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999987 56789999999999999876 46999988887776666555555444
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-12 Score=133.54 Aligned_cols=169 Identities=18% Similarity=0.120 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007201 47 AGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIG 126 (613)
Q Consensus 47 ~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~ 126 (613)
..+.+....+...........+.+.|. +++|.++.+.+.+.+...++..++.++.|+++||+ |||+.+.++.++..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~ 283 (377)
T TIGR00890 206 QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVG 283 (377)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence 344444444555555555556667675 56899999999999999999999999999999996 9999999988888777
Q ss_pred HHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHH
Q 007201 127 LVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYF 206 (613)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~ 206 (613)
.+++.+. +. .+...++...++.+++.+...+..+.++.|.+|+++ |++..+++
T Consensus 284 ~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~ 336 (377)
T TIGR00890 284 MAAMLFI---PM------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFL 336 (377)
T ss_pred HHHHHHc---cc------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHH
Confidence 7666554 11 112334455667778888888888899999999988 99999999
Q ss_pred HHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q 007201 207 YLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMA 244 (613)
Q Consensus 207 ~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~ 244 (613)
+...++|..++|.+.|++.+..||+..|.+.+++.+++
T Consensus 337 ~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 337 YTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 99999999999999999998899999988877665544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.1e-12 Score=137.67 Aligned_cols=177 Identities=18% Similarity=0.069 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+.+|.+.+..++....++++..|+|.|+++++|++..++++..+...++..++.+++|+++||+ |||+.+.....+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 5678888888888888888999999999999999999999999999999999999999999996 999887665444443
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
+...+.+.. . .+....++.+++.|+..............|.+|++. |+++.++
T Consensus 337 ~~~~~~~~~--~-------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi 389 (467)
T PRK09556 337 IFTLGVYQH--A-------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGI 389 (467)
T ss_pred HHHHHHHHh--c-------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHH
Confidence 332222210 0 123344455566664433333333456679999988 9999999
Q ss_pred HHHHHhH-HHHHHHHHHHHhcc------------ccchhHHHHHHHHHHHHHHHHHHH
Q 007201 206 FYLALNL-GSLFSNTILGYFED------------EGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 206 ~~~~~~i-G~~~gp~l~g~l~~------------~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
.+...++ |+.++|.+.|++.+ ..+|+..|++..++.+++.+..+.
T Consensus 390 ~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 390 KGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 77999999999988 568999998887777766555543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-12 Score=134.43 Aligned_cols=173 Identities=22% Similarity=0.121 Sum_probs=132.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007201 42 TGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA 121 (613)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~ 121 (613)
+++++.++......++....++.+..++|.|+++++|.+..+.+.......+...++.+++|+++||+ |||+.+..+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~ 293 (394)
T TIGR00883 215 TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTV 293 (394)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHH
Confidence 33344566677777788888888899999999989999999999999999999999999999999996 99998876655
Q ss_pred HHHHHH-HHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhh
Q 007201 122 IFVIGL-VSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKI 200 (613)
Q Consensus 122 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~ 200 (613)
+..+.. ..+.... . ..+.+.++...++.+++.+...+...+++.|.+|+++ |+
T Consensus 294 ~~~~~~~~~~~~~~--~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~ 347 (394)
T TIGR00883 294 LAALLAVPLLMALL--D------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RY 347 (394)
T ss_pred HHHHHHHHHHHHHh--c------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------ee
Confidence 444332 2222110 0 0124555666677788888888999999999999988 88
Q ss_pred hHHHH-HHHHHhHHHHHHHHHHHHhccccc-hhHHHHHHHHHH
Q 007201 201 AFFSY-FYLALNLGSLFSNTILGYFEDEGM-WALGFWASAGSA 241 (613)
Q Consensus 201 ~~~~~-~~~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~~~~~~ 241 (613)
++.++ ++.+..+|..++|.++|++.+..| |+..++..+.+.
T Consensus 348 ~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 348 TGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred eEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 88887 556667899999999999998877 776666555433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=132.91 Aligned_cols=171 Identities=11% Similarity=0.107 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+.++.+.+..++....++++..|+|.|+++.+|+++.+++.+.+.+.++..++.+++|+++||+ |||+++.....+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence 4566666666777777888999999999999999999999999999999999999999999996 999998877766555
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
..+++... + +.....+..++.|++.+...+...++..+..|++ +++..++
T Consensus 284 ~~~~~~~~---~--------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~ 333 (394)
T PRK03699 284 LMYLFVNT---D--------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNF 333 (394)
T ss_pred HHHHHHHc---C--------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHH
Confidence 54444333 1 1333444556677777777777777777776533 4566788
Q ss_pred HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 007201 206 FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALIL 247 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~ 247 (613)
.....++|+.++|.+.|++.+..|++..++..+++..++.+.
T Consensus 334 ~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 334 ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 888889999999999999999889998888777666555443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=129.14 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhc
Q 007201 56 GLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSY 135 (613)
Q Consensus 56 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~ 135 (613)
++.....+....++|.|+++++|.++.+.+.+.+...+...++.+++|+++||+ |||+++.++.++..+....+...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~-- 285 (375)
T TIGR00899 209 TLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD-- 285 (375)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH--
Confidence 333334445567788999999999999999888877777888899999999996 99999888766555444433332
Q ss_pred ccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHH
Q 007201 136 AFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSL 215 (613)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~ 215 (613)
.+.+.+++..++.+++.|...+....+..|.+|++ +++++++++...++|..
T Consensus 286 ---------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~ 337 (375)
T TIGR00899 286 ---------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNTGRVGWI 337 (375)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHHHH
Confidence 12455666677778888877788888888988753 56999999999999999
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 216 FSNTILGYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 216 ~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
++|.+.|++.+..||+..|++.+++.+++.+....
T Consensus 338 ~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 338 IAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 99999999998889999998888777666665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-11 Score=133.57 Aligned_cols=179 Identities=18% Similarity=0.094 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHHH-HHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYW-GRYKTC-AIFQAIF 123 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~-Grr~~i-~~~~~l~ 123 (613)
+.++.+.+..+.....++++..|+|.|+++++|++..+++...+.+.++..++.+++|+++||+. ++|+.. .......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~ 322 (434)
T PRK11663 243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI 322 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence 45666666667777777888899999998889999999999999999999999999999999952 222222 2221111
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
.+....+... +. .+.....+..++.|++............+|.+|+++ |+++.
T Consensus 323 ~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 375 (434)
T PRK11663 323 LLSVGSLWLM---PF------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAAT 375 (434)
T ss_pred HHHHHHHHHc---cc------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHH
Confidence 2122221111 11 112222233333333322222233456789998888 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHc
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
++.+...++|+.++|.+.|++.++.||+..|++.+++.+++.+..+..
T Consensus 376 g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 423 (434)
T PRK11663 376 GFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPF 423 (434)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988887766665544443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-11 Score=130.32 Aligned_cols=170 Identities=17% Similarity=0.149 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhc
Q 007201 56 GLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSY 135 (613)
Q Consensus 56 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~ 135 (613)
....+.++....+++.|+.+ .|.+ +.+...+.+.++..++.++.|+++||+ ||||.+..+..+..++.+.+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-- 299 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA-- 299 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh--
Confidence 34455666677888888764 4653 445666778888889999999999996 99999988877777776665554
Q ss_pred ccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHH
Q 007201 136 AFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSL 215 (613)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~ 215 (613)
+ +.+..++..++.|++.+...+.......|.+|+++ |+++.++++...++|..
T Consensus 300 -~--------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ 352 (399)
T PRK05122 300 -P--------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLG 352 (399)
T ss_pred -c--------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHH
Confidence 1 24556677788899888888888888889998888 99999999999999999
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCccccc
Q 007201 216 FSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHF 258 (613)
Q Consensus 216 ~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 258 (613)
++|.+.|++.+..||+..|++.+.+.+++.+..+..+++.+++
T Consensus 353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (399)
T PRK05122 353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRA 395 (399)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999888999999988877777766666555544433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.9e-12 Score=134.90 Aligned_cols=163 Identities=12% Similarity=0.086 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh---CCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhh
Q 007201 58 ATLAFFGVGVNLVLFLTRVV---GQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSS 134 (613)
Q Consensus 58 ~~~~~y~~~~~l~~yl~~~l---g~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~ 134 (613)
....+.....+++.|+.+.+ +.+..+.+.+.++..++..++.+++|+++||+ |||+.+..+.++..++.+++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~- 312 (420)
T PRK09528 235 VACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc-
Confidence 33344445556777776554 56667788888988899999999999999996 99999999888888877777665
Q ss_pred cccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH-HHHHHhHH
Q 007201 135 YAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY-FYLALNLG 213 (613)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~-~~~~~~iG 213 (613)
+ +.+.+++.+++.+++.+...+....++.|.+|++. |++..+. +++..++|
T Consensus 313 --~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg 364 (420)
T PRK09528 313 --T--------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLG 364 (420)
T ss_pred --c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHH
Confidence 1 25667777888888887777777889999999887 7777665 67788999
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 214 SLFSNTILGYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 214 ~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
.+++|.+.|++.+..||+..|.+.+++.++..++.+.
T Consensus 365 ~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 365 AVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999899999999877666555544443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=131.20 Aligned_cols=171 Identities=16% Similarity=0.032 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGL 127 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~ 127 (613)
.+.+....+......+....++|.|+.+ .|+++.+.+.+.....++..++.++.|+++||+ |||+.+..+.....++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 299 (406)
T PRK11551 222 TLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASL 299 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 3344444455556677788889999874 799999999999999999999999999999996 99999888666555555
Q ss_pred HHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHH
Q 007201 128 VSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFY 207 (613)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~ 207 (613)
+.+... + +.+.+.+..++.+++.++..+...++..|.+|+++ |+++.++.+
T Consensus 300 ~~~~~~---~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~ 350 (406)
T PRK11551 300 AALAAA---P--------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAV 350 (406)
T ss_pred HHHHhc---C--------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHH
Confidence 444433 1 23445555566777777778888899999999998 999999999
Q ss_pred HHHhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHH
Q 007201 208 LALNLGSLFSNTILGYFEDEGM-WALGFWASAGSATMALILFL 249 (613)
Q Consensus 208 ~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~ 249 (613)
...++|..+||.+.|++.+..+ |...++..+.+.+++.+..+
T Consensus 351 ~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 351 AVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887644 55555555555444444433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=133.98 Aligned_cols=178 Identities=16% Similarity=0.108 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHHH-HHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYW-GRYKTC-AIFQAIF 123 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~-Grr~~i-~~~~~l~ 123 (613)
+.++..++..++.....|++..++|.|++++.|++..+++.....+.++..++.+++|+++||+. |||+.. +....+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 55777777777777888889999999999999999999999888888999999999999999941 344432 2222233
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
.++.+.+.+. +. .+....++..++.|.+..........+..|.+|++. |++++
T Consensus 333 ~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~ 385 (452)
T PRK11273 333 TIATIVYWLN---PA------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAA 385 (452)
T ss_pred HHHHHHHHHh---cc------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHH
Confidence 3333332222 11 112333333344444332222333456779999988 99999
Q ss_pred HHHHHHHhHHHHH-HHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 204 SYFYLALNLGSLF-SNTILGYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 204 ~~~~~~~~iG~~~-gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
++.+...++|+.+ +|.+.|++.+..||+..|++.++..+++.+....
T Consensus 386 g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 386 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 9999888898765 7999999999999999998887766666555443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-11 Score=138.48 Aligned_cols=134 Identities=14% Similarity=0.051 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHH
Q 007201 86 NNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLS 165 (613)
Q Consensus 86 ~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (613)
....+..++..++.+++|+++||+ |||++++++.++.+++.+++++. ++ ...+++.
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~---~s--------------------~~~ll~~ 654 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG---NS--------------------ESAMIAL 654 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH---cc--------------------HHHHHHH
Confidence 334556688899999999999996 99999999988888887777765 21 3445556
Q ss_pred HHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 007201 166 IYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMAL 245 (613)
Q Consensus 166 ~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~ 245 (613)
+++.++..++..+...++++|++|++. |++++++.+...++|+++||.+++++... +...+|++.+++.+++.
T Consensus 655 ~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ 727 (742)
T TIGR01299 655 LCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGG 727 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence 667777777788889999999999998 99999999999999999999999987653 45667777776666555
Q ss_pred HHHHH
Q 007201 246 ILFLI 250 (613)
Q Consensus 246 ~~~~~ 250 (613)
++.+.
T Consensus 728 ll~~~ 732 (742)
T TIGR01299 728 LLALK 732 (742)
T ss_pred HHHHh
Confidence 54444
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.1e-11 Score=124.34 Aligned_cols=174 Identities=25% Similarity=0.312 Sum_probs=148.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchH-HHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYK-TCAIFQAIFV 124 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~-~i~~~~~l~~ 124 (613)
|.++...+..+...........+.+.|+.+..|.++.+.+.......++..++.++.|+++||+ |||+ .+..+..+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 253 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA 253 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence 3444455556666677777788888898887899999999999999999999999999999996 9999 9998888888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
++.+.+... .+.+..++..++.+++.+...+...+++.|.+|+++ |++.++
T Consensus 254 i~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 304 (352)
T cd06174 254 LGLLLLALA-----------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASG 304 (352)
T ss_pred HHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHH
Confidence 887777665 125667788889999999999999999999999888 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFL 249 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~ 249 (613)
+.+...++|..++|.+.+++.+..+|+..+.+.++..+++.+..+
T Consensus 305 ~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 305 LFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 999999999999999999999888999999988877766655543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-11 Score=126.51 Aligned_cols=177 Identities=15% Similarity=-0.017 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH-HHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCA-IFQAIFV 124 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~-~~~~l~~ 124 (613)
|.++..++..++.....+.+..+.+.|+++.+|.+..+.+.+.....++..++.+++|+++||+ |||+... .......
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 5677777778888888888999999999999999999999999999999999999999999996 9986211 1111111
Q ss_pred HHH---HHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 125 IGL---VSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 125 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
++. ....... +. .......+....+.+.+.+ ..+...++++|.+|+++ |++
T Consensus 294 ~~~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~ 347 (399)
T TIGR00893 294 IAGLVLSLLMFAT--NY-----------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGL 347 (399)
T ss_pred HHHHHHHHHHHHh--cc-----------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHH
Confidence 111 1111110 00 0112223333333333433 78889999999999998 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHH
Q 007201 202 FFSYFYLALNLGSLFSNTILGYFEDEGM-WALGFWASAGSATMALILFL 249 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~ 249 (613)
++++.+...++|..++|.+.|++.+..| |+..|++.+.+.+++.+..+
T Consensus 348 ~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 348 TGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888 99888887776666555443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-11 Score=129.67 Aligned_cols=166 Identities=14% Similarity=0.063 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChh---hHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 007201 56 GLATLAFFGVGVNLVLFLTRVVGQNNA---DAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSV 132 (613)
Q Consensus 56 ~~~~~~~y~~~~~l~~yl~~~lg~~~~---~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~ 132 (613)
+........+..+++.|+.+..+.... ..+.+..+..++..++.+..|+++||+ |||+++..+..+..++.+.+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T PRK09874 229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHH
Confidence 333444445567778888765443222 234555666777888899999999996 9999999888776666655554
Q ss_pred hhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhH
Q 007201 133 SSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNL 212 (613)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~i 212 (613)
. .+.+.+++.+++.|++.+...+...+.+.+..|++. |++.+++++...++
T Consensus 308 ~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~ 358 (408)
T PRK09874 308 V-----------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDI 358 (408)
T ss_pred h-----------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHH
Confidence 3 125566777888899999989999999989888887 89999999999999
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHc
Q 007201 213 GSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 213 G~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
|..+||.++|++.+..||+..|++.+++.+++.+..+..
T Consensus 359 g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 359 GNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998999999998887777666655443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.3e-11 Score=128.53 Aligned_cols=177 Identities=18% Similarity=0.101 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH-HHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAI-FQAIFV 124 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~-~~~l~~ 124 (613)
|.++...+..++....+++...++|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+.. +.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~ 299 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG 299 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence 45666667777788888999999999985 5899999999998999999999999999999996 99887642 333333
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
++.+.+... +. ....+.+..++..++.|++.+...+ ....+.|..| ++ |+++++
T Consensus 300 ~~~~~l~~~---~~---------------~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~------~g~~~g 353 (402)
T TIGR00897 300 IFTLALYYI---PQ---------------HFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH------KGAAMS 353 (402)
T ss_pred HHHHHHHHH---HH---------------ccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch------hHHHHH
Confidence 333333222 10 0001244455666677777665544 3455666544 45 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
+++...++|+.++|.+.|++.+.+||...+++.+++.+++.+...+
T Consensus 354 ~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 354 VLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999899999998888777666555444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=124.90 Aligned_cols=177 Identities=14% Similarity=0.053 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+..+.+.+..++....++++..++|.|+.+ +|.+..+++...+.+.++..++.++.|+++||+ |||+.++.+..+..+
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~ 282 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV 282 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence 345555566666778888999999999975 899999999999999999999999999999996 999999988777666
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCC-CCCccccchhhhHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFD-EEDPKEGHSKIAFFS 204 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p-~~~~~~~~~r~~~~~ 204 (613)
+..++... +. +.... ..++.+++.+...+.......+.++ +++ |++.++
T Consensus 283 ~~~~~~~~---~~-------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g 332 (393)
T PRK09705 283 GFCGFIWL---PL-------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVA 332 (393)
T ss_pred HHHHHHHc---cc-------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHH
Confidence 65554432 11 11112 1235677777777877777778875 345 899999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHHcCCc
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGM-WALGFWASAGSATMALILFLIGTPR 254 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~~ 254 (613)
+.+...++++.++|.+.|++.+..| |...|++.+.+.++..+......++
T Consensus 333 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 333 FMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999998876 7777887776666555555544443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.2e-11 Score=129.18 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGL 127 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~ 127 (613)
+..+....++.....+....++|.|+.+++|++..+.+.+.+...++..++.++.|+++||+ |||+.+..+..+..+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 318 (405)
T TIGR00891 240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLI 318 (405)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHH
Confidence 33344444455555667778899999999999999999999999999999999999999996 99999988776543322
Q ss_pred HHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHH
Q 007201 128 VSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFY 207 (613)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~ 207 (613)
...... . .+.+.+.+..++.++..+...+..+.++.|.+|+++ |++++++.+
T Consensus 319 ~~~~~~---~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~ 370 (405)
T TIGR00891 319 IPVFAI---G-------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTY 370 (405)
T ss_pred HHHHHh---C-------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHH
Confidence 222111 0 123445555566666666677888899999999988 999999999
Q ss_pred HHHhHHHHHHHHHHHHhccccc-hhHHHHH
Q 007201 208 LALNLGSLFSNTILGYFEDEGM-WALGFWA 236 (613)
Q Consensus 208 ~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~ 236 (613)
...++|+.++|.+.|++.+..| |+..+..
T Consensus 371 ~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 371 QLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999999888 7765543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.4e-11 Score=129.39 Aligned_cols=179 Identities=15% Similarity=0.054 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+.++...+..++.....|++..++|.|+++..|+++.++++......+...++.+++|+++||+ |+++....+..+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~ 329 (438)
T TIGR00712 251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL 329 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence 4566666666677777888999999999998999999999999999999999999999999995 754433333322221
Q ss_pred ---HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 126 ---GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 126 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
+.+.+... +. .+.+......++.|.+..+..........|.+|++. |+++
T Consensus 330 ~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 382 (438)
T TIGR00712 330 VTIAVIVYWMN---PA------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA 382 (438)
T ss_pred HHHHHHHHHhc---CC------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeee
Confidence 11111111 11 112323333334444322222222346779999888 9999
Q ss_pred HHHHHHHHhHHH-HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcC
Q 007201 203 FSYFYLALNLGS-LFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGT 252 (613)
Q Consensus 203 ~~~~~~~~~iG~-~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 252 (613)
.++++...++|+ ++||.+.|++.+..||...|++.+...+++.+..++..
T Consensus 383 ~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 433 (438)
T TIGR00712 383 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 433 (438)
T ss_pred hhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888875 68999999999988999998877766666655555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=124.05 Aligned_cols=169 Identities=12% Similarity=-0.051 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.++...+..++...+.+...++.+.|+++ +|.++.+.+...++..++..++.++.|++.||+ |+|+++.++.+...+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 556666777777778888888999999965 899999999999988889999999999999996 999999999998888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
...++++. .+.+.+++..++.++..|...+....++.+. |+++ |+++.++
T Consensus 283 ~~~~~~~~-----------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~ 332 (382)
T TIGR00902 283 RWAIIGAI-----------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQAL 332 (382)
T ss_pred HHHHHHhH-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHH
Confidence 88777765 2367788889999999999999999999987 8777 8899998
Q ss_pred HH-HHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 007201 206 FY-LALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALIL 247 (613)
Q Consensus 206 ~~-~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~ 247 (613)
++ ....+|..+||.++|++.+..|+ ..|++.+...++++++
T Consensus 333 ~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 333 YNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 76 46789999999999999998886 5566666666555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-10 Score=127.69 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=112.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
++..+..+...+.....++.+..+.|.|+++.+|++..++++......++..++.+++|+++||+ |||++++.+..+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~ 315 (434)
T PRK15075 237 WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAI 315 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 33333334444556677888899999999988999999999888888899999999999999996 99999887655433
Q ss_pred HHHH-HHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 125 IGLV-SLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 125 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
+... .+..... . .+........++.+++.+...+....+..|.+|++. |++++
T Consensus 316 ~~~~~~~~~~~~--~------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~ 369 (434)
T PRK15075 316 LTAYPALSWLVA--A------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGF 369 (434)
T ss_pred HHHHHHHHHHHc--C------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchhe
Confidence 2221 1111100 0 112223333444556666666777788999999998 99999
Q ss_pred HHHHH-HHhHHHHHHHHHHHHhccccch
Q 007201 204 SYFYL-ALNLGSLFSNTILGYFEDEGMW 230 (613)
Q Consensus 204 ~~~~~-~~~iG~~~gp~l~g~l~~~~g~ 230 (613)
++.+. +..+++.++|.+.|++.+..|+
T Consensus 370 g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 370 SLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred eHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 98544 4445688899999999887775
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-10 Score=126.10 Aligned_cols=169 Identities=16% Similarity=0.109 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhc
Q 007201 56 GLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSY 135 (613)
Q Consensus 56 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~ 135 (613)
+.....+|++..|+|.|+.+.+|.+..+++...++..++..++.++.|+++||+ |||+++.++.++..+....+....
T Consensus 253 ~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~- 330 (432)
T PRK10406 253 AAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL- 330 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH-
Confidence 345778889999999999989999999998888888888888899999999996 999988776654433322221110
Q ss_pred ccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHh-HHH
Q 007201 136 AFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALN-LGS 214 (613)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~-iG~ 214 (613)
+. ..+....+....+...+.+...+..+.+.+|.||++. |++++++.+...+ +++
T Consensus 331 -~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~g 386 (432)
T PRK10406 331 -QN-----------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALFG 386 (432)
T ss_pred -Hc-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHHH
Confidence 00 0011211111222223333334556788899999999 9999999776554 445
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 215 LFSNTILGYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 215 ~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
..+|.+.+++.....|...+++.++..+++.+..++
T Consensus 387 ~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 387 GSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 568888887654333655666555555555555444
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=124.14 Aligned_cols=162 Identities=16% Similarity=0.201 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcc
Q 007201 57 LATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYA 136 (613)
Q Consensus 57 ~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~ 136 (613)
.....+..+..+.+.|+++ .|++. .+.....+.++..+++++.|++.||+ ||||.+..+..+..++.+++.+.
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~--- 299 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA--- 299 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc---
Confidence 3345555666778888764 46543 45556667777889999999999995 99999999888877777665554
Q ss_pred cccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHH
Q 007201 137 FLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLF 216 (613)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~ 216 (613)
+ +.+..++..++.+++.+...+...+.+.|.+|+++ |++++++++...++|..+
T Consensus 300 ~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~i 353 (392)
T PRK12382 300 P--------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGV 353 (392)
T ss_pred c--------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHH
Confidence 1 24556667788888888888888888999999888 999999999999999999
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHc
Q 007201 217 SNTILGYFEDEGMWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 217 gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
+|.+.|++.+..||+..|.+.+.+.+++.+..+..
T Consensus 354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998999999998887777766665543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.5e-10 Score=120.61 Aligned_cols=174 Identities=13% Similarity=-0.049 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGL 127 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~ 127 (613)
++......++.....++...+++.|+.+..|.+..+++.+.....++..++.++.|+++||+ |||+.+ .+..+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~ 284 (390)
T PRK03545 207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence 34444444555566666778888899888999999999999999999999999999999996 987654 4444444443
Q ss_pred HHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHH
Q 007201 128 VSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFY 207 (613)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~ 207 (613)
..+... + .+.+.+++..++.|++.+...+.....+.+..| +. |++++++++
T Consensus 285 ~~l~~~---~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~ 335 (390)
T PRK03545 285 LLLLPA---A-------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALFS 335 (390)
T ss_pred HHHHHH---h-------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHHH
Confidence 332222 0 124556667777888877777777788888766 35 889999999
Q ss_pred HHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcC
Q 007201 208 LALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGT 252 (613)
Q Consensus 208 ~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 252 (613)
...++|..+||.++|++.+.+|++..|++.+.+.+++++......
T Consensus 336 ~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 336 GIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 899999999999999999999999999988887777776665544
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.2e-11 Score=107.58 Aligned_cols=133 Identities=21% Similarity=0.268 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHH
Q 007201 89 SKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYL 168 (613)
Q Consensus 89 ~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (613)
+.+.++..++.++.|+++||+ |||+.+..+..+..++.+.+... .+.+.+.+.+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~ 60 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS-----------------------SNITVLIIARFL 60 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh-----------------------ccHHHHHHHHHH
Confidence 345677888999999999996 99999999988888777766654 125667778889
Q ss_pred HHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q 007201 169 TALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILF 248 (613)
Q Consensus 169 ~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~ 248 (613)
.+++.+...+....++.|.+|+++ |++..++.+...++|..++|.+.+++.+..+|+..+++.+....++.+..
T Consensus 61 ~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (141)
T TIGR00880 61 QGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILL 134 (141)
T ss_pred HHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 999999889999999999999998 99999999999999999999999999888899988888776665555544
Q ss_pred HHc
Q 007201 249 LIG 251 (613)
Q Consensus 249 ~~~ 251 (613)
...
T Consensus 135 ~~~ 137 (141)
T TIGR00880 135 AFL 137 (141)
T ss_pred hhc
Confidence 443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=124.06 Aligned_cols=159 Identities=13% Similarity=-0.087 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 007201 62 FFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKP 141 (613)
Q Consensus 62 ~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~ 141 (613)
.+++..++|.|+++.+|.++.+.+++.+...++..++.++.|+++||. ++++.+..+..+..++.+++.+. +
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~---~---- 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM---P---- 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc---c----
Confidence 356677889999888999999999999999999999999999999995 88888888877776666655543 2
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHH
Q 007201 142 SGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTIL 221 (613)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~ 221 (613)
+.+...+..++.|++.+...+...+++.|.+|++. |++++++++...++|..+||.+.
T Consensus 311 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 311 ----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHH
Confidence 24455666777788877777777889999999888 99999999999999999999999
Q ss_pred HHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 222 GYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 222 g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
|++.+..|++..++..+++.++..++...
T Consensus 369 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 369 GGLGAMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 99999889887877766555444444333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-10 Score=120.88 Aligned_cols=154 Identities=14% Similarity=0.180 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccc
Q 007201 60 LAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLL 139 (613)
Q Consensus 60 ~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~ 139 (613)
..+.....++|.|+++ .|.++.+.+...+...++..+++++.|+++||+ |||+++..+.++..++...+. .
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~------ 284 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S------ 284 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h------
Confidence 3444455678888864 699999999999999999999999999999996 999999888776666544332 1
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHH
Q 007201 140 KPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNT 219 (613)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~ 219 (613)
....+..+++.+++.+...|...+.+.|..|+++ ++...+.++...++|..+||.
T Consensus 285 -------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~ 339 (381)
T PRK03633 285 -------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPS 339 (381)
T ss_pred -------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 1113345566677666778888888999988776 777788888889999999999
Q ss_pred HHHHhccccchhHHHHHHHHHHHHHHHH
Q 007201 220 ILGYFEDEGMWALGFWASAGSATMALIL 247 (613)
Q Consensus 220 l~g~l~~~~g~~~~f~~~~~~~~i~~~~ 247 (613)
++|++.+++||++.|.+.+.+.+++.+.
T Consensus 340 ~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 340 FTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 9999999899999888877666554433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-10 Score=126.88 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 007201 64 GVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSG 143 (613)
Q Consensus 64 ~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~ 143 (613)
....++|.|+++++|++..+++.+.+...++..++.+++|+++||+ |||+++..+.++..++.+.+... +.
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~---~~----- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAI---GG----- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhc---cc-----
Confidence 4567899999889999999999999999999999999999999996 99999888776655554433322 11
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHH
Q 007201 144 CGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGY 223 (613)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~ 223 (613)
.+.+......++.+....+..+..++++.|.+|+++ |++.+++++...++|+.+||.++|+
T Consensus 364 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~ 424 (496)
T PRK03893 364 -------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGAL 424 (496)
T ss_pred -------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHH
Confidence 123333333444333333445677788999999888 9999999999999999999999999
Q ss_pred hccccchhHHHHHHHHH
Q 007201 224 FEDEGMWALGFWASAGS 240 (613)
Q Consensus 224 l~~~~g~~~~f~~~~~~ 240 (613)
+.+.+||+..+.+.+..
T Consensus 425 l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 425 IAQRLDLGTALASLSFS 441 (496)
T ss_pred HhccCChHHHHHHHHHH
Confidence 99999998777655443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-10 Score=125.95 Aligned_cols=184 Identities=18% Similarity=0.126 Sum_probs=151.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCch--HHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRY--KTCAIFQAI 122 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr--~~i~~~~~l 122 (613)
.|.+...++..++.+-+..++......|.++++|++..+...+..+.++.+.++.+++|++.||+ |.| ++++.+.++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence 36777778888888888889999999999999999999999999999999999999999999995 999 888888776
Q ss_pred HHHH-HHHH-HhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhh
Q 007201 123 FVIG-LVSL-SVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKI 200 (613)
Q Consensus 123 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~ 200 (613)
..+. ...+ ++. +.. ....+.+.+++.-++.|+..|..++..-++.+++.|+++ .+
T Consensus 359 ~~~i~~~g~~G~~---~~~--------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~ 415 (477)
T PF11700_consen 359 WIIIPLYGLFGFW---PSF--------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EA 415 (477)
T ss_pred HHHHHHHHHHHhh---hcc--------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hh
Confidence 6332 2222 121 110 001345668888889999999999999999999999998 89
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHHcC
Q 007201 201 AFFSYFYLALNLGSLFSNTILGYFEDEGM-WALGFWASAGSATMALILFLIGT 252 (613)
Q Consensus 201 ~~~~~~~~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~ 252 (613)
..+|++.+.....+.+||++.|.+.+..| .|..+....++.+++++++....
T Consensus 416 efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 416 EFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999988776 78888888877777777776543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-10 Score=112.26 Aligned_cols=157 Identities=18% Similarity=0.152 Sum_probs=126.3
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 007201 41 RTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQ 120 (613)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~ 120 (613)
.....+.+|++.++.++-..+.+=+....+.+.++.+|+|+.+++.+.+.....+.+.+++.|.++|++ ||+-..+.+.
T Consensus 259 v~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a 337 (459)
T KOG4686|consen 259 VNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASA 337 (459)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHH
Confidence 344455666666666655555555556678899999999999999999999999999999999999997 9988776664
Q ss_pred H-HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchh
Q 007201 121 A-IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSK 199 (613)
Q Consensus 121 ~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r 199 (613)
. ++.++...+.+. .+.-+.+..++|+.......+.++.++...|+++ .
T Consensus 338 ~~~tl~~H~~l~Ft-------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q------L 386 (459)
T KOG4686|consen 338 CILTLLGHSGLFFT-------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------L 386 (459)
T ss_pred HHHHHHHhhhHHhh-------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------h
Confidence 4 445566666665 3335567778888888777778999999999999 9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhccccc
Q 007201 200 IAFFSYFYLALNLGSLFSNTILGYFEDEGM 229 (613)
Q Consensus 200 ~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g 229 (613)
|++++..+...|+|-++.|+++|.+.++-|
T Consensus 387 GTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 387 GTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred cchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 999999999999999999999999988655
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.5e-10 Score=117.20 Aligned_cols=177 Identities=20% Similarity=0.168 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+.++......++.....|...+|+-.++++.-|++....+++...+.++..++.+++|+++|| +.|+++.....+..+
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 557777778888888899999999999999999999999999999999999999999999999 888888888777777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
..+.+.+.. .+.+...+..++.+++.+........-.++.. ++. +..+.++
T Consensus 289 ~~l~l~~~~----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~------~~~a~sl 339 (394)
T COG2814 289 ALLALTFTG----------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDA------ADLAGSL 339 (394)
T ss_pred HHHHHHHhc----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCc------hHHHHHH
Confidence 777666651 23455666666677776655555555555533 344 7799999
Q ss_pred HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCC
Q 007201 206 FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTP 253 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 253 (613)
+..+.|+|..+|..++|.+.+++|+....++.++..+++++..+...+
T Consensus 340 ~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 340 NVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999888888777666544
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=122.70 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH--
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIF-- 123 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~-- 123 (613)
+.++.+.+..++.....+.+..+.+.|+.+.+|+++.+++...+...++..++.++.|+++||+.+||+.........
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI 295 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456667777777777778888999999999999999999999999999999999999999998524444332221111
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
.++...+... +. .+.....+..++.|+......+....+..|.+|++. |+++.
T Consensus 296 ~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 348 (379)
T TIGR00881 296 IVSLLVYWLN---PA------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAA 348 (379)
T ss_pred HHHHHHHhcC---cc------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHH
Confidence 1111111111 11 123344445555665555555666778899999988 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccchhHHH
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMWALGF 234 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f 234 (613)
++++...++|+.++|.+.|++.+.+||+..|
T Consensus 349 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 349 GFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 9999999999999999999999988987643
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=121.00 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVG-VNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~-~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
|.++..+...+.....++... .+.|.|.++.+|.++.+.+.+.....++..++.++.|+++||+ |||+.+..+.++..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG 288 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence 445555555566666666666 7788888877999999999999999999999999999999996 99999988766666
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
++.+.+.+.. + +.+.+++..++.|++.+...+...+++.|.+|+++ |++..+
T Consensus 289 ~~~~~~~~~~---------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~ 340 (365)
T TIGR00900 289 LAILVVGLTP---------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFG 340 (365)
T ss_pred HHHHHHHhhc---------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence 6655555441 0 25566777888899999999999999999999888 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccc
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGM 229 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g 229 (613)
+++...++|..++|.++|++.+..|
T Consensus 341 ~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 341 AQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999887543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-10 Score=122.24 Aligned_cols=172 Identities=15% Similarity=0.137 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHH-HHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 007201 55 QGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVS-KWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVS 133 (613)
Q Consensus 55 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~-~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~ 133 (613)
.++.....+....+.+.|+.+++|+++.+.+.+.. ...++..++.+++|+++||+ ||||.+.++.++..+..+.+...
T Consensus 231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l 309 (491)
T PRK11010 231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLL 309 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666678888988889999999999875 55678999999999999996 99998887766555544333221
Q ss_pred hcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHH
Q 007201 134 SYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLG 213 (613)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG 213 (613)
...+ .+...+....++..+..|...+...++..+..+++. +++.+++.+...++|
T Consensus 310 ~~~~-------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~~lg 364 (491)
T PRK11010 310 SITD-------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALSAVG 364 (491)
T ss_pred Hhcc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHHHH
Confidence 1000 123334444555455555555677888889998888 889999999999999
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcC
Q 007201 214 SLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGT 252 (613)
Q Consensus 214 ~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 252 (613)
..+++.+.|++.+..||+..|.+.+++.+.+++.....+
T Consensus 365 ~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 365 RVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999989999999888887777766665544
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-10 Score=115.03 Aligned_cols=163 Identities=14% Similarity=0.032 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRV--VGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIF 123 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~--lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~ 123 (613)
+.+++.++..++....--++..|++.|+.+. +|+++.+++...+.+..+.+++.++++++.||+ |+||++.++..+.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 4455555555655556667889999999854 699999999999999999999999999999995 9999998887777
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
+++.+++... +. .. ...+.++.|++.+..+|...+...+.+|++. +++.
T Consensus 219 ~~~~~l~~~~---~~--------------------~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~as 267 (310)
T TIGR01272 219 VLLSIGAALT---HG--------------------YV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGS 267 (310)
T ss_pred HHHHHHHHHc---CC--------------------HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhH
Confidence 7665444433 11 11 2234557889999999999999999888653 2344
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSA 241 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~ 241 (613)
++. ....+|+++.|.+.|.+.+..|.+.+|++..++.
T Consensus 268 ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 268 GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY 304 (310)
T ss_pred HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 454 4667999999999999999889888887555443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.3e-11 Score=116.15 Aligned_cols=377 Identities=13% Similarity=0.175 Sum_probs=212.8
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCC
Q 007201 69 LVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEG 148 (613)
Q Consensus 69 l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (613)
+..+.+...+++.++..++-+.++.-..+.++++|++.||.+|-|..-++-+....+|.+.++.-.
T Consensus 66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg-------------- 131 (459)
T KOG4686|consen 66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG-------------- 131 (459)
T ss_pred hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch--------------
Confidence 445555566666667777888888999999999999999988987766666666666766655421
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc
Q 007201 149 NPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEG 228 (613)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~ 228 (613)
....+|+...+|+++|+|.-....+.+.+..-+|..++ ..-.++++.....+|..+-..+.+++.+..
T Consensus 132 ------i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~ 199 (459)
T KOG4686|consen 132 ------ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTM 199 (459)
T ss_pred ------HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence 12458999999999999987778888999999999888 889999999899999988777777776643
Q ss_pred chhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccCCcccchhhhcccccccccCCccc
Q 007201 229 MWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARN 308 (613)
Q Consensus 229 g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (613)
+-- +-...-..+++...+-.+ .-...+.-+... .+.+++.+ ++
T Consensus 200 ~~~---~~~~ghT~LG~~l~~~~~--------------tc~~slical~l---g~~D~rAe-----------------ri 242 (459)
T KOG4686|consen 200 GRM---FPGVGHTLLGLWLCFEVK--------------TCKQSLICALSL---GLSDDRAE-----------------RI 242 (459)
T ss_pred HHh---cccchHHHHHHHHHHHHH--------------HHHHHHHHHHHh---hhhhhHHH-----------------HH
Confidence 311 101111111111111000 000000000000 00000000 00
Q ss_pred ccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceeeee
Q 007201 309 ILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQ 388 (613)
Q Consensus 309 ~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (613)
+..+++.. |.++..++.+.++ .....+.+..+.|++......+. -
T Consensus 243 lh~e~g~~-------------------Ge~pkLtdv~~f~-------------ppfw~~~iicv~yyva~fPFi~l---g 287 (459)
T KOG4686|consen 243 LHLEEGFL-------------------GEEPKLTDVNTFY-------------PPFWVLVIICVLYYVAWFPFITL---G 287 (459)
T ss_pred HhhhcCcc-------------------cCCcccccccccC-------------ccHHHHHHHHHHHHHHHHHHhhh---h
Confidence 00000000 0000000001110 01122333344444443332221 1
Q ss_pred hhhcccCccccccCccccccchhH---HHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007201 389 GAAMKTNISTFHIPPASMSSFDIL---SVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVE 465 (613)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~ 465 (613)
.+....+ +++++..-++++.. ......|+.+.+ .+|+|++- +.+..+.+....+-..+.+..
T Consensus 288 ~~fF~~r---fGlS~~~a~~i~s~vy~Isav~spvfg~i----~Dk~G~n~--------~wv~~a~~~tl~~H~~l~Ft~ 352 (459)
T KOG4686|consen 288 PMFFQKR---FGLSAVSAGNILSTVYGISAVLSPVFGAI----SDKYGFNL--------WWVASACILTLLGHSGLFFTF 352 (459)
T ss_pred HHHHHHh---hCCChhhccchhhhhhhhhhhhhhhHHHh----Hhhhccee--------hhHHHHHHHHHHHhhhHHhhh
Confidence 1112222 24444444444443 345566677766 45665432 244444444444433333221
Q ss_pred hhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHH
Q 007201 466 IFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVT 545 (613)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~ 545 (613)
.+ --.++.++|++..+..-..|-.+..+.|++.-|++.|......++|-.+.+.+.+
T Consensus 353 --------------------ls---Py~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag 409 (459)
T KOG4686|consen 353 --------------------LS---PYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAG 409 (459)
T ss_pred --------------------cc---HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhh
Confidence 11 1234567788888877888888999999999999999999999999999999988
Q ss_pred HHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 007201 546 IVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARW 590 (613)
Q Consensus 546 ~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~ 590 (613)
.+.+ +++++ ..++.+|...+.+++..+.+.+.+-++
T Consensus 410 ~i~d--~~g~y-------~~le~ffl~~~~~aL~svgil~~~N~k 445 (459)
T KOG4686|consen 410 FIAD--GDGSY-------DNLEAFFLIIGLMALTSVGILFYLNKK 445 (459)
T ss_pred eeec--CCCch-------hhHHHHHHHHHHHHHHHHHHHhheecc
Confidence 7654 22222 234566777777777666666554444
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-10 Score=120.86 Aligned_cols=171 Identities=11% Similarity=0.051 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007201 47 AGILILVNQGLATLAFFGVGVNLVLFLTRVV---GQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIF 123 (613)
Q Consensus 47 ~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~l---g~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~ 123 (613)
.++..+...+.....+.....+.+.|+++.+ +.+....+.+.+...+...++.+..|++.||+ |||+.+.++.++.
T Consensus 216 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~ 294 (396)
T TIGR00882 216 KFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIM 294 (396)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHH
Confidence 3444444444444555555567888888765 45566778888888888889999999999996 9999999988877
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
.++..+.... + +.+.+++..++.+++..........+..+.++++. +++..
T Consensus 295 ~l~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~ 345 (396)
T TIGR00882 295 SVRIIGSSFA---T--------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIY 345 (396)
T ss_pred HHHHHHHHhc---C--------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEee
Confidence 7766665544 1 25556677777887765555555556667676665 67766
Q ss_pred HH-HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 007201 204 SY-FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALIL 247 (613)
Q Consensus 204 ~~-~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~ 247 (613)
+. ++...++|.+++|.+.|++.+..||+..|.+.+++.++..++
T Consensus 346 ~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 346 LIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 66 677899999999999999999889999999887776655444
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-10 Score=118.26 Aligned_cols=184 Identities=16% Similarity=0.052 Sum_probs=146.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+..|.+.+.++...-++-++..++|.|+++++|.++.+++.+...+.+.+.+..++||+||||+ |.+|+.++.....++
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~ 296 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMAL 296 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999999999996 999999988888887
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
+....... +. .+.+ ..+...++...+.+.+..|.-+.....++...||++ -+...++
T Consensus 297 ~~~~l~~~---~~------------~~~~-~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~ 353 (417)
T COG2223 297 AAALLSLF---LT------------GFGH-GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGI 353 (417)
T ss_pred HHHHHHcc---cc------------cccc-CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHH
Confidence 77776654 11 0000 122344444444456666666777778888888764 5788899
Q ss_pred HHHHHhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHHcCC
Q 007201 206 FYLALNLGSLFSNTILGYFEDEGM-WALGFWASAGSATMALILFLIGTP 253 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~ 253 (613)
.....++|+..-|...+...+..| +...|++...+.+++.+..+..+.
T Consensus 354 vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 354 VGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988999998877777 888888888877777776555443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.7e-10 Score=121.13 Aligned_cols=186 Identities=15% Similarity=0.049 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGL 127 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~ 127 (613)
++..++..+......+.+..+.+.+ .++.|++..+++.......++..++.+++|+++||+ |||+.+.++.++..++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~ 363 (481)
T TIGR00879 286 FLGVVLQWFQQFTGINAIMYYSPTI-FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICL 363 (481)
T ss_pred HHHHHHHHHHHHhCCeehHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHH
Confidence 3333333333333333344445544 457899998888888899999999999999999996 99999999887777776
Q ss_pred HHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHH
Q 007201 128 VSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFY 207 (613)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~ 207 (613)
+.+.+...... .+ . +...+...+....+..+.......+....+..|.+|++. |+++.++.+
T Consensus 364 ~~~~~~~~~~~----------~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~ 425 (481)
T TIGR00879 364 FVLGILGASFV----------TG-S-SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAV 425 (481)
T ss_pred HHHHHHhhccc----------CC-c-ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHH
Confidence 66653211000 00 0 000012222222222222222334666778899999988 999999999
Q ss_pred HHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCC
Q 007201 208 LALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTP 253 (613)
Q Consensus 208 ~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 253 (613)
...++|++++|.+.+++.+..+|+..|++.+++.+++.+..++..+
T Consensus 426 ~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 426 AANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence 9999999999999999988888998888887776666665554444
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.5e-09 Score=113.22 Aligned_cols=158 Identities=21% Similarity=0.165 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHhCCChhhH-HHHHHHH----HHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccc
Q 007201 64 GVGVNLVLFLTRVVGQNNADA-ANNVSKW----TGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFL 138 (613)
Q Consensus 64 ~~~~~l~~yl~~~lg~~~~~~-~~~~~~~----~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~ 138 (613)
....+...+.....+.+..+. +...... .+...+.++.-|.++||+ |||..+.+..+...+..+.+.+.
T Consensus 39 ~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~----- 112 (463)
T KOG2816|consen 39 TVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ----- 112 (463)
T ss_pred cchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH-----
Confidence 333555566655554443332 2333333 467788899999999996 99999999988887777766665
Q ss_pred cCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHH
Q 007201 139 LKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSN 218 (613)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp 218 (613)
.+++++ ..-..-+.+...+...++++|...+++ |....++.+.....+..++|
T Consensus 113 --------------------~~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~~~p 165 (463)
T KOG2816|consen 113 --------------------GYWFFL-LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLVIGP 165 (463)
T ss_pred --------------------HHHHhh-hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHhHHH
Confidence 122322 111223445566777899999998888 99999999999999999999
Q ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCc
Q 007201 219 TILGYFEDEGMWALGFWASAGSATMALILFLIGTPR 254 (613)
Q Consensus 219 ~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~ 254 (613)
.+++.+.+..|+...|.++.+..++..+...+..|+
T Consensus 166 ~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E 201 (463)
T KOG2816|consen 166 ALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE 201 (463)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999998999999999988888777766665554
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-09 Score=119.11 Aligned_cols=158 Identities=11% Similarity=-0.027 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.+...+...++....+.....+.|.|++..+|.++.+.+.......++..++.++.|+++||+ |||+++..+..+..+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 339 (471)
T PRK10504 261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL 339 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4455556666666666666667788888888999999999998888888888889999999996 999999988887777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
+.+++.+.. . ..+.+.+.+..++.|++.+...+....+..+.+|++. ++.++++
T Consensus 340 ~~~~~~~~~---~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~ 393 (471)
T PRK10504 340 VSLLFMLVA---L-----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSL 393 (471)
T ss_pred HHHHHHhcc---c-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHH
Confidence 666555431 1 1123334445666778888888888899999999887 9999999
Q ss_pred HHHHHhHHHHHHHHHHHHhccccch
Q 007201 206 FYLALNLGSLFSNTILGYFEDEGMW 230 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~g~ 230 (613)
.++..++|..+|+.++|.+.+..|+
T Consensus 394 ~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 394 LSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999988665554
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.7e-10 Score=121.15 Aligned_cols=172 Identities=12% Similarity=0.011 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHHHHHH--H
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSY-WGRYKTCAIFQA--I 122 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~-~Grr~~i~~~~~--l 122 (613)
+.++..+...++..+.++....+++.|++ ++|++..+++.+.++..++..++++++|+++||. +++|+...++.. +
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 45666666677777888888889999986 4799999999999999999999999999999983 234444433322 2
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
..++.+++... .+.+.+++.+++.|++.+...+...+++.|.+|+++ +++.
T Consensus 320 ~~l~~ll~~~~-----------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~ 370 (455)
T TIGR00892 320 NGLTHLLCALA-----------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSA 370 (455)
T ss_pred HHHHHHHHHHh-----------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhH
Confidence 22333333332 135667778888999999999999999999999888 9999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHH
Q 007201 203 FSYFYLALNLGSLFSNTILGYFEDEG-MWALGFWASAGSATMALIL 247 (613)
Q Consensus 203 ~~~~~~~~~iG~~~gp~l~g~l~~~~-g~~~~f~~~~~~~~i~~~~ 247 (613)
+++++...++|..+||.++|++.+.. +|+..|++.++..+++.+.
T Consensus 371 ~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 371 VGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 99999999999999999999998876 5998988887766555443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-09 Score=113.91 Aligned_cols=167 Identities=11% Similarity=-0.016 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.++...+..++....+....++++.|+. +.|.++.+.+...+...++..+..++.|++.||+ |+|+.+..+.+...+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence 45555555566666666677788888985 5899999999998888888889999999999996 999999988887777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
+.+++... .+.+.+++..++.|++.+...+....+..+. ++++ +++..+.
T Consensus 283 ~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~ 332 (382)
T PRK11128 283 RWGLMGST-----------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQAL 332 (382)
T ss_pred HHHHHHhh-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHH
Confidence 76666554 2366677788888999888888888887776 4444 6777887
Q ss_pred HH-HHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 007201 206 FY-LALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMAL 245 (613)
Q Consensus 206 ~~-~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~ 245 (613)
++ ....+|..+||.++|++.+..|+. .|+..+++.++++
T Consensus 333 ~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~ 372 (382)
T PRK11128 333 YSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence 65 556788899999999999988874 5555555544443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-09 Score=116.91 Aligned_cols=178 Identities=15% Similarity=0.077 Sum_probs=122.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHH--------
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTC-------- 116 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i-------- 116 (613)
++.++.+.+..+.....++.+..|+|.|+.+.+|.+..+.+...++..++..++.+++|+++||+ ++|+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~ 338 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI 338 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence 46788888888999999999999999999999999999999999999999999999999999995 644221
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCcccc
Q 007201 117 AIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEG 196 (613)
Q Consensus 117 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~ 196 (613)
..+......+..++... ... .+....++...+.+.+.++..+.......|..|. .
T Consensus 339 ~~~~~~~~~~~~~~~~~-~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~---- 393 (465)
T TIGR00894 339 FNGIGGLGPGIFAYALP-YLS-------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F---- 393 (465)
T ss_pred HHHHHHHHHHHHHHHHH-HcC-------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H----
Confidence 11111111111111111 000 1123333334444444454455555555565554 4
Q ss_pred chhhhHHHHHHHHHhHHHHHHHHHHHHhcccc---chhHHHHHHHHHHHHHHHHHHH
Q 007201 197 HSKIAFFSYFYLALNLGSLFSNTILGYFEDEG---MWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 197 ~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~---g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
++...++.+...++|+.++|.+.|++.+.. +|...|.+.++..+++.++...
T Consensus 394 --~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 394 --LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 899999999999999999999999887643 4888888877766666555443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.3e-09 Score=111.40 Aligned_cols=172 Identities=12% Similarity=-0.090 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007201 47 AGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIG 126 (613)
Q Consensus 47 ~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~ 126 (613)
.++...+..++.....+....+.|.|+.+++|+++.+.+.......++..++.++.|+++||+ |+|+.+.++.++..++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g 294 (406)
T PRK15402 216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG 294 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 445555555555566666667788898889999999998887777778889999999999996 9999999988877777
Q ss_pred HHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHH
Q 007201 127 LVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYF 206 (613)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~ 206 (613)
.+++....... ..+.+.+++..++.++|.+...+......... ++++ |++..+.+
T Consensus 295 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~~ 349 (406)
T PRK15402 295 LLLAALATVIS------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAAM 349 (406)
T ss_pred HHHHHHHHHcc------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHHH
Confidence 77666541100 12345566777788888887776665554333 3355 89999999
Q ss_pred HHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q 007201 207 YLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMA 244 (613)
Q Consensus 207 ~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~ 244 (613)
++...+|..+|+.+.+++.+..++....+..++..++.
T Consensus 350 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 350 GMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 99999999999999999987777655444444443333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=119.60 Aligned_cols=176 Identities=8% Similarity=-0.049 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchH-----HHHHHHH
Q 007201 47 AGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYK-----TCAIFQA 121 (613)
Q Consensus 47 ~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~-----~i~~~~~ 121 (613)
.+|.+.+..+......+.+..++|.|+.+++|++..+++...++..++..++.+++|+++||+ |||+ .......
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~ 331 (476)
T PLN00028 253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIV 331 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHH
Confidence 345555555555666677788899999988999999999999999999999999999999996 8762 2221111
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
....+...+.+. . ..+.+...+..++.+++.+...+...++..+..| +. |++
T Consensus 332 ~~l~~i~~~~~~----~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g~ 383 (476)
T PLN00028 332 QTLGGVFCIWLG----R-----------------ANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LGV 383 (476)
T ss_pred HHHHHHHHHHhc----c-----------------cchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------chh
Confidence 111111111111 0 0113333444445555544444555555555544 44 889
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcC
Q 007201 202 FFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGT 252 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 252 (613)
..++.+.+.++|+.++|.+.+ .....+|+..|++.+++.+++.++.++.+
T Consensus 384 ~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 384 ISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 999988777888888776654 22345699999988877777766665543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-09 Score=114.24 Aligned_cols=153 Identities=13% Similarity=-0.033 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcc
Q 007201 57 LATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYA 136 (613)
Q Consensus 57 ~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~ 136 (613)
......+.+..++|.|+++ .|.++.+.+...+...++..++.+++|+++||+ |||+++..+.++..+..+.+...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~--- 316 (426)
T PRK12307 242 SIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRI--- 316 (426)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHH---
Confidence 3334445567788989875 699999999988889999999999999999996 99999988877665554443332
Q ss_pred cccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHH
Q 007201 137 FLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLF 216 (613)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~ 216 (613)
+. .....+....+..+....+..+..+.++.|.+|++. |++++++.+...++|+.+
T Consensus 317 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~ 372 (426)
T PRK12307 317 PQ------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTF 372 (426)
T ss_pred cc------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHH
Confidence 11 111212222222223333345667788899999988 999999999999999999
Q ss_pred HHHHHHHhccccchhHHHHHHH
Q 007201 217 SNTILGYFEDEGMWALGFWASA 238 (613)
Q Consensus 217 gp~l~g~l~~~~g~~~~f~~~~ 238 (613)
+|.+.|++.+.+|+....++..
T Consensus 373 gp~~~g~l~~~~g~~~~~~~~~ 394 (426)
T PRK12307 373 NSMAATWLGITMGLGAALTFIV 394 (426)
T ss_pred HHHHHHHHHHcccHHHHHHHHH
Confidence 9999999998888765444333
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.5e-08 Score=106.08 Aligned_cols=162 Identities=19% Similarity=0.131 Sum_probs=114.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc--cC--chHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 007201 68 NLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSY--WG--RYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSG 143 (613)
Q Consensus 68 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~--~G--rr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~ 143 (613)
....|+++++|+++++.....+...+- -...++.|.++|.+ +| ||+-++++.++..++...++.. |..
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~---~~~---- 82 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL---PAS---- 82 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc---ccc----
Confidence 344688899999999987766554433 34567889999995 34 4555566666665555555544 210
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHH
Q 007201 144 CGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGY 223 (613)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~ 223 (613)
..+.....+..++..+|....-...-+++.|....+. .+ |+...+..+....+|+.++..++|.
T Consensus 83 ------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p-~~---~g~lqS~~~~~~~~G~lv~~~l~G~ 146 (433)
T PF03092_consen 83 ------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREP-ES---RGDLQSFVWGVRSVGSLVGSLLSGP 146 (433)
T ss_pred ------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC-ch---hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1123445556667788888888888999999875543 22 7788888899999999999999999
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHHcCC
Q 007201 224 FEDEGMWALGFWASAGSATMALILFLIGTP 253 (613)
Q Consensus 224 l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 253 (613)
+.+..+++..|.+.+++..+..+..++..+
T Consensus 147 l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 147 LLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred hhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 999889998888887766655554444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=114.76 Aligned_cols=148 Identities=16% Similarity=0.070 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+..+.+.+..++....++.+..++| ++.+++|.+..+.+...+...++..++.+++|+++||+ |||+.+.........
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 327 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVF 327 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHH
Confidence 4455555666677777778888888 66678999999999999999999999999999999996 999554433333222
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
...+.... .+....++..++.|++.+...+...+++.|.+|+++ |++++++
T Consensus 328 ~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~ 378 (398)
T TIGR00895 328 AVLVGSTL-----------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGW 378 (398)
T ss_pred HHHHHHHh-----------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHH
Confidence 22222211 124456667778888888889999999999999988 9999999
Q ss_pred HHHHHhHHHHHHHHHHHHh
Q 007201 206 FYLALNLGSLFSNTILGYF 224 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l 224 (613)
.+...++|..+||.++|++
T Consensus 379 ~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 379 AIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999876
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-09 Score=116.49 Aligned_cols=165 Identities=15% Similarity=0.061 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHH-HHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRV-VGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTC-AIFQAIF 123 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i-~~~~~l~ 123 (613)
+.++...+..++....++++..|+|.|+++. .|.+..+++.......++..++.+++|+++||+ |||+.. ....++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~ 320 (412)
T TIGR02332 242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA 320 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence 4567777777888888999999999999763 477888899999999999999999999999996 977753 3333333
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
.++. .+.... +. ....+.+..+.++|.....+.......|.+|+++ |++++
T Consensus 321 ~~~~-~~~~~~--~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~ 371 (412)
T TIGR02332 321 AAGW-LLASAT--DH--------------------NLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAI 371 (412)
T ss_pred HHHH-HHHHhc--CC--------------------HHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHH
Confidence 3332 222110 10 1112222223333333333444455567788888 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccc-hhHHHHHHHHH
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGM-WALGFWASAGS 240 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~~~~~ 240 (613)
++.+...++|+.++|.+.|.+.+..| |+..|++.+++
T Consensus 372 g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 372 AVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 99999999999999999999988764 99888766554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.6e-09 Score=111.35 Aligned_cols=172 Identities=15% Similarity=0.048 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGL 127 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~ 127 (613)
.+..++..+......+....+++.|+.+..|+++.+.+...+...++..++.++.|+++||+ |+|+.+..+..+..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence 34444444444555556667788888888999999999999999999999999999999996 99999998887777666
Q ss_pred HHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhh-ccCCCCCccccchhhhHHHHH
Q 007201 128 VSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGA-DQFDEEDPKEGHSKIAFFSYF 206 (613)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~-~~~p~~~~~~~~~r~~~~~~~ 206 (613)
+++.... + +.+...+..++.+++.+...+....... +..+++. ++.+ ..
T Consensus 280 ~~~~~~~--~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~ 329 (382)
T PRK10091 280 LMLFFFG--G--------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GG 329 (382)
T ss_pred HHHHHHH--h--------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HH
Confidence 5544321 1 1233444444555555444443343333 3333333 4443 34
Q ss_pred HHHHhHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHHHHHH
Q 007201 207 YLALNLGSLFSNTILGYFEDE-GMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 207 ~~~~~iG~~~gp~l~g~l~~~-~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
+...++|..+||.++|++.+. .+|+..+.+.+....+.......
T Consensus 330 ~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 330 QIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence 567789999999999998875 67998888887665554444433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-08 Score=104.71 Aligned_cols=84 Identities=14% Similarity=0.024 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccc---------
Q 007201 157 LHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDE--------- 227 (613)
Q Consensus 157 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~--------- 227 (613)
.++..++++.++.|.|.+...++.++++++..|+++ +.+.+++.+....+|..+||++++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 457889999999999999999999999999999888 88999999999999999999999976631
Q ss_pred -------cchhHHHHHHHHHHHHHHH
Q 007201 228 -------GMWALGFWASAGSATMALI 246 (613)
Q Consensus 228 -------~g~~~~f~~~~~~~~i~~~ 246 (613)
..|+.+|++.+.+..+..+
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i 107 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAI 107 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888866555444333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=116.89 Aligned_cols=160 Identities=18% Similarity=0.070 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.++.+++..++....++....+.+.|.+..++ ++.+.+.+..+..++..++.++.|+++||+ |||+++.++.++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 556666667777777776666666666655556 556677777788889999999999999996 999999999887777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCc--cccchhhhHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDP--KEGHSKIAFF 203 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~--~~~~~r~~~~ 203 (613)
+.+.+.+. + .+.+.+++..++.+++.+...+...++++|..+.++- ++++ +|..+
T Consensus 300 ~~~~~~~~---~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~ 356 (437)
T TIGR00792 300 GYLIFFFA---G-------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRA-EGLVY 356 (437)
T ss_pred HHHHHHHc---c-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccc-hHHHH
Confidence 76665553 1 1244556666778888888889999999998774321 1121 78999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccch
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMW 230 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~ 230 (613)
+++++..++|..+++.+.|++.+..||
T Consensus 357 ~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 357 SVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999998776665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.8e-09 Score=111.04 Aligned_cols=174 Identities=18% Similarity=0.072 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHH-HHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTG-TVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIG 126 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~-~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~ 126 (613)
++..+...++...+......+.+.|+.+ .|+++.+.+.+...... ...++.+++|++.||+ |+|+++..+..+..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 4444444455556666666778888875 79999999998887764 5667789999999996 9999998877655333
Q ss_pred HHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCC-CCccccchhhhHHHH
Q 007201 127 LVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDE-EDPKEGHSKIAFFSY 205 (613)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~-~~~~~~~~r~~~~~~ 205 (613)
.+....... ... ..+....+....+.+++.|...+...+...+..++ +. +++.+++
T Consensus 288 ~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~ 344 (390)
T TIGR02718 288 ALLWFAQAA-FWL----------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTA 344 (390)
T ss_pred HHHHHHHHH-ccc----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHH
Confidence 222211100 000 01122333334445566677777777787777765 55 8999999
Q ss_pred HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 007201 206 FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALI 246 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~ 246 (613)
.+...++|..+||.++|++.+..||+..|.+.+++.+++.+
T Consensus 345 ~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 345 VQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988999888877765555433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.4e-09 Score=112.27 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHH-HHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCC
Q 007201 67 VNLVLFLTRVVGQNNADAANNVSKWT-GTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCG 145 (613)
Q Consensus 67 ~~l~~yl~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (613)
.+.+.|+.+++|+++.+.+++..... ++..++.+++|++.||+ |||+.+..+.++..+..+.+......++
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~~------- 301 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTPK------- 301 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcCC-------
Confidence 34455777789999999999886654 45788999999999996 9999988777666555443322211011
Q ss_pred CCCCCCCCCCchhHHHHHHHHH----HHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHH
Q 007201 146 DEGNPCGSHSSLHMALFYLSIY----LTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTIL 221 (613)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~----l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~ 221 (613)
+.+.+++..+ ..+++.+...+....++.+.+|.++ + +.+....++|..+++.++
T Consensus 302 ------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~~~~~ 359 (402)
T PRK11902 302 ------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVYVGPTS 359 (402)
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHHHHHHH
Confidence 2333444333 3445555556666777777766444 3 444445567777667789
Q ss_pred HHhccccchhHHHHHHHHHHHHHHHHHHHc
Q 007201 222 GYFEDEGMWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 222 g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
|++.+..||+..|.+.+++.+++.+..+..
T Consensus 360 G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 360 GYLVEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988887776665554443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-09 Score=117.73 Aligned_cols=170 Identities=16% Similarity=0.109 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHH------------HHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 007201 52 LVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAAN------------NVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIF 119 (613)
Q Consensus 52 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~------------~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~ 119 (613)
....+...+.+|++..+.|.+++ +.|++..+++. ...+..++..++.++.++++||+ |||++++++
T Consensus 294 ~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~ 371 (502)
T TIGR00887 294 AGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMG 371 (502)
T ss_pred HHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHH
Confidence 33444556778888888888885 67886543221 12233445566788899999996 999999888
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchh
Q 007201 120 QAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSK 199 (613)
Q Consensus 120 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r 199 (613)
..+..++..++.+... +. +.+ ..+....+...+...+..+....+.+|.+|++. |
T Consensus 372 ~~~~~~~~~~l~~~~~-~~-----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R 426 (502)
T TIGR00887 372 FFILTVLFFVLGFAYN-HL-----------------STH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------R 426 (502)
T ss_pred HHHHHHHHHHHHHHHH-hc-----------------chh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------H
Confidence 8777666555554310 00 001 111111111222223345666778899999999 9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhccc----------cchhHHHHHHHHHHHHHHHHH
Q 007201 200 IAFFSYFYLALNLGSLFSNTILGYFEDE----------GMWALGFWASAGSATMALILF 248 (613)
Q Consensus 200 ~~~~~~~~~~~~iG~~~gp~l~g~l~~~----------~g~~~~f~~~~~~~~i~~~~~ 248 (613)
+++.++.+...++|+.++|.+.+++.+. .++...|++.++..+++.+..
T Consensus 427 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 427 STAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988763 234456666655555554433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-09 Score=116.98 Aligned_cols=156 Identities=14% Similarity=0.109 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.++...+..++..+.+++...++|.|+++.+|.++.+++.......++..++.++.|++.||+ |||+++.++..+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence 4455566666777788888889999999999999999999999999999999999999999996 999999988887777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
+..++.+... +. .+.+.++...++.|+|.+...+.......+.+|+++ |+++.++
T Consensus 334 ~~~~~~~~~~-~~------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~ 388 (485)
T TIGR00711 334 GFYWRAFTFT-PD------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSL 388 (485)
T ss_pred HHHHHhccCC-CC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHH
Confidence 7766653210 11 234555666778889988887777777888888887 9999999
Q ss_pred HHHHHhHHHHHHHHHHHHhccc
Q 007201 206 FYLALNLGSLFSNTILGYFEDE 227 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~ 227 (613)
++...++|+.+|+.+.+.+.+.
T Consensus 389 ~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 389 SNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4e-08 Score=110.23 Aligned_cols=200 Identities=12% Similarity=0.143 Sum_probs=148.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+.++++.....+......+.......-+.+.++++.++.|++.+.+-++..+...+..|.+-|. -|-|.+-+|.+++.+
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL 174 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence 4555555555555444447777778888889999999999999999999999999999999995 888899999999999
Q ss_pred HHHHHHhhhcccccCCCCC-----------------------CCCCC-----CC--C---CCCchhHHHHHHHHHHHHHh
Q 007201 126 GLVSLSVSSYAFLLKPSGC-----------------------GDEGN-----PC--G---SHSSLHMALFYLSIYLTALG 172 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~-----~~--~---~~~~~~~~~~~~~~~l~g~g 172 (613)
+.+++++- +....++ +..++ |+ + ..+...+.+++++.++.|+|
T Consensus 175 gsll~alP----Hf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG 250 (735)
T KOG3626|consen 175 GSLLFALP----HFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIG 250 (735)
T ss_pred HHHHHhCh----HHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcC
Confidence 88887752 2111111 11111 11 1 11122344788889999999
Q ss_pred ccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhcc------------------ccc-hhHH
Q 007201 173 NGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFED------------------EGM-WALG 233 (613)
Q Consensus 173 ~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~------------------~~g-~~~~ 233 (613)
....++.-.+++=|...++. -...+++.+....+|.++|.++++.+.. +.| |+..
T Consensus 251 ~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlG 324 (735)
T KOG3626|consen 251 ATPIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLG 324 (735)
T ss_pred CCCCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHH
Confidence 99999999999988877666 6789999999999999999999887642 123 8899
Q ss_pred HHHHHHHHHHHHHHHHHcCCccc
Q 007201 234 FWASAGSATMALILFLIGTPRYR 256 (613)
Q Consensus 234 f~~~~~~~~i~~~~~~~~~~~~~ 256 (613)
|++++.+.++..+.++++.+..+
T Consensus 325 FLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 325 FLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHHHHHhCcccCc
Confidence 99999888888877777655443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-09 Score=116.39 Aligned_cols=154 Identities=13% Similarity=0.013 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.+....+..++....+++...++|.|+++.+|.++.+++.......++..++.+++|++.||+ |||+.+..+.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~ 337 (495)
T PRK14995 259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL 337 (495)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4555666667777777888888999999999999999999999999999999999999999996 999999888887777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
+.+++..... ..+.+......++.|+|.|...+.....+.+..|+++ ++.+.++
T Consensus 338 ~~~~l~~~~~--------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~ 391 (495)
T PRK14995 338 SFYGLAMTDF--------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAI 391 (495)
T ss_pred HHHHHHHhcC--------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHH
Confidence 7666554311 1123445566778899999888888888889899888 9999999
Q ss_pred HHHHHhHHHHHHHHHHHHhcc
Q 007201 206 FYLALNLGSLFSNTILGYFED 226 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~ 226 (613)
+++..++|+.+|+.+.|.+.+
T Consensus 392 ~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 392 ETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998754
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.2e-08 Score=102.85 Aligned_cols=125 Identities=16% Similarity=0.055 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhCC---Chhh----HHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH-HHHHHHHHHHHHHhhhccc
Q 007201 66 GVNLVLFLTRVVGQ---NNAD----AANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAI-FQAIFVIGLVSLSVSSYAF 137 (613)
Q Consensus 66 ~~~l~~yl~~~lg~---~~~~----~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~-~~~l~~~~~~~~~~~~~~~ 137 (613)
...+|+|+++..+. ++.+ .+...++..+...+..|+-|.++|.. |+||-... ...+..+.++++.++ |
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i---~ 110 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFI---P 110 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHh---C
Confidence 35678888877655 4433 45666777888888899999999996 86665544 444555566666666 2
Q ss_pred ccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHH
Q 007201 138 LLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFS 217 (613)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~g 217 (613)
. ..+++..++...+..++..+......+++.+..++++ -++..+.-+...++|+.+.
T Consensus 111 ~-----------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i~ 167 (438)
T COG2270 111 P-----------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVIL 167 (438)
T ss_pred C-----------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchHH
Confidence 2 1235556666667788888889999999999998877 3333334333445555544
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-08 Score=109.14 Aligned_cols=162 Identities=10% Similarity=0.063 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007201 47 AGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIG 126 (613)
Q Consensus 47 ~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~ 126 (613)
.++...+...+....++....+.|.|+++++|.++.+.+.+.....++..++.++.|+++||+ |||+.+..+..+..++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 285 (385)
T TIGR00710 207 MFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVS 285 (385)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 344444445555566677778889999989999999999999999999999999999999996 9999998887777776
Q ss_pred HHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHH
Q 007201 127 LVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYF 206 (613)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~ 206 (613)
.+++......+. ......+...++.|++.+...+.......|.+| ++ |+++.+++
T Consensus 286 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~ 340 (385)
T TIGR00710 286 AVLLEITAILGL------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALF 340 (385)
T ss_pred HHHHHHHHHhcc------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHH
Confidence 665554311010 123344555666788888888888888888876 44 78999988
Q ss_pred HHHHhHHHHHHHHHHHHhccccchhHHH
Q 007201 207 YLALNLGSLFSNTILGYFEDEGMWALGF 234 (613)
Q Consensus 207 ~~~~~iG~~~gp~l~g~l~~~~g~~~~f 234 (613)
+.....++.+++.+.+.+.+..+|...+
T Consensus 341 ~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 368 (385)
T TIGR00710 341 GTLRLVLGAIVGYLVSLIHGNTAWPMSL 368 (385)
T ss_pred HHHHHHHHHHHHHHHHhccccChHHHHH
Confidence 7776654444444555555444444333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=111.76 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFL-TRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIG 126 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl-~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~ 126 (613)
++...+..++.....++...|++.|+ ++.+|+++.+++.....+.++..++.+++|++.||+ ||||++..+..+..++
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 338 (438)
T PRK10133 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMAL 338 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 33344444555566667778888886 567899999999999999999999999999999996 9999999887776655
Q ss_pred HHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHH
Q 007201 127 LVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYF 206 (613)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~ 206 (613)
.++..+. +. . ..+....+.|++.+...|...+...+.+|++. +.+.++.
T Consensus 339 ~~~~~~~---~~--------------------~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~ 387 (438)
T PRK10133 339 CLISAFA---GG--------------------H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFI 387 (438)
T ss_pred HHHHHHc---CC--------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHH
Confidence 5444433 11 1 12345667899999999999999999987642 3444444
Q ss_pred HHHHhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHH
Q 007201 207 YLALNLGSLFSNTILGYFEDEGM-WALGFWASAGSATMALI 246 (613)
Q Consensus 207 ~~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~ 246 (613)
.+ ..+|+.++|.+.|.+.+..| -+..|++..++.+...+
T Consensus 388 ~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 388 VM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred hH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 33 33688888999999988877 67777766655544433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=6e-09 Score=112.36 Aligned_cols=174 Identities=17% Similarity=0.021 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRV--VGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIF 123 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~--lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~ 123 (613)
|.++...+..++..+.+.....+.+.|+... .+.+....+.+.....+.....+++.|++.||+ ++|+.+..+..+.
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~ 284 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF 284 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence 3444444555655555555666777777543 345556667777777777777788889999996 9999999888777
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
.++...+.+.. .+.+.+.++.++.++|.+...|.....+.+..|++. |++++
T Consensus 285 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~ 336 (395)
T PRK10054 285 VIGLVGFIFSG----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYF 336 (395)
T ss_pred HHHHHHHHHcc----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehH
Confidence 77776665431 124455667778889988888888889999999887 88888
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFL 249 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~ 249 (613)
+..+ ...+|..+||.++|++.++.|....|++.+.+..++.++..
T Consensus 337 ~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 337 SAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 7654 56689999999999999999988888776555554444443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=107.62 Aligned_cols=153 Identities=17% Similarity=0.108 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+..+.+.+..++....++++..++|.|+++ .|.+..+.+...+...++..++.++.|+++||+-+||+++..+.++..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 275 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV 275 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence 445555555566677788888999999974 7999999999999999999999999999999951456667777777777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCC-CCccccchhhhHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDE-EDPKEGHSKIAFFS 204 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~-~~~~~~~~r~~~~~ 204 (613)
+...+.+. +. .... ...++.|++.|...+...+.+.+..++ ++ +++.++
T Consensus 276 ~~~~~~~~---~~--------------------~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~ 325 (355)
T TIGR00896 276 GLCGLLFA---PM--------------------HGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ------AAALSA 325 (355)
T ss_pred HHHHHHHh---hh--------------------hHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH------HHHHHH
Confidence 76655554 11 1111 134577889888888877777765543 33 678888
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccc
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGM 229 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g 229 (613)
+.+...++|..++|.+.|++.++.|
T Consensus 326 ~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 326 MAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888889999999999999988765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-08 Score=109.82 Aligned_cols=163 Identities=14% Similarity=0.084 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 007201 64 GVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSG 143 (613)
Q Consensus 64 ~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~ 143 (613)
.+..+.|.+ .+..|.+..+..+......+...++.+++|+++||+ |||++++.+.++..++.+++..... +.
T Consensus 289 ~~~~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~-~~----- 360 (479)
T PRK10077 289 VVLYYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY-TQ----- 360 (479)
T ss_pred HHHHHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHh-cC-----
Confidence 333444544 456898887777777778888899999999999996 9999999999988888777665411 00
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHhccc-cchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHH
Q 007201 144 CGDEGNPCGSHSSLHMALFYLSIYLTALGNGG-YQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILG 222 (613)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g 222 (613)
..........++.+.+.+. ..+....+++|.+|+++ |++++++.+...++|..+++.+.+
T Consensus 361 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p 421 (479)
T PRK10077 361 -------------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFP 421 (479)
T ss_pred -------------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 0111233333444444443 34677899999999888 999999999999999888866555
Q ss_pred H------hccccchhHHHHHHHHHHHHHHHHHHHcCC
Q 007201 223 Y------FEDEGMWALGFWASAGSATMALILFLIGTP 253 (613)
Q Consensus 223 ~------l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 253 (613)
. +.+..+|+..|++.++..+++.+..+...+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 422 MMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred HHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence 3 345677887887776655555555444433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.4e-09 Score=112.73 Aligned_cols=212 Identities=15% Similarity=0.092 Sum_probs=134.2
Q ss_pred hhcc-ccc----CcccccccccCcccCCCC---CceecccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Q 007201 11 IVKE-KIK----NDQEEACTLDGAVDRHGR---PAIKRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNA 82 (613)
Q Consensus 11 ~~~~-p~~----~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~ 82 (613)
++.| |+| .++|.++.++++.+.+.. +..++.--..+.+|.+.+..+.+.+.++.+..++|.|+.+.+|++..
T Consensus 215 ~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~ 294 (466)
T KOG2532|consen 215 FYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVR 294 (466)
T ss_pred HhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChh
Confidence 4455 776 344555554443322221 22222233447899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCc--------hHHHHHH-HHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCC
Q 007201 83 DAANNVSKWTGTVYIFSLLGAFLSDSYWGR--------YKTCAIF-QAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGS 153 (613)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~G~lsDr~~Gr--------r~~i~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (613)
+.|+..++..+.+.+..+++|.++||. -+ ||.+-.. .....+.++.+++. +.
T Consensus 295 ~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~---~~--------------- 355 (466)
T KOG2532|consen 295 ETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFNTIAFGGPAVFLLVLAFT---SD--------------- 355 (466)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHHhHHHHHHHHHHHeeeec---CC---------------
Confidence 999999999999999999999999996 33 2222211 11112222222222 21
Q ss_pred CCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccc---cch
Q 007201 154 HSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDE---GMW 230 (613)
Q Consensus 154 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~---~g~ 230 (613)
.+.+..++...+.....|...+....-..|..| +. -+..+++.+...++.+.++|.+.+.+... ..|
T Consensus 356 ---~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~------a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW 425 (466)
T KOG2532|consen 356 ---EHRLLAVILLTIAIGLSGFNISGFYKNHQDIAP-QH------AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEW 425 (466)
T ss_pred ---CcchHHHHHHHHHHHHcccchhhhHhhhhhccc-hH------HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHH
Confidence 111111111111111112222222222222233 23 67889999999999999999999998842 369
Q ss_pred hHHHHHHHHHHHHHHHHHHHc
Q 007201 231 ALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 231 ~~~f~~~~~~~~i~~~~~~~~ 251 (613)
+..|++.++..+++.+++.+.
T Consensus 426 ~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 426 RIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHhchheeEe
Confidence 999999988888777665554
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.4e-11 Score=131.30 Aligned_cols=191 Identities=15% Similarity=0.146 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhc
Q 007201 56 GLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSY 135 (613)
Q Consensus 56 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~ 135 (613)
.+.+...+++......-+.+.++++.+++|++.+.+-++..+..++..|+++|. -|-|.+-+|.+++.++.+++++
T Consensus 12 ~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l--- 87 (539)
T PF03137_consen 12 GLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL--- 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc---
Confidence 333366667776677788889999999999999999999999999999999995 7888888899999999888775
Q ss_pred ccccCCCCCC----------CC--CCCC-------------------CCCCchhHHHHHHHHHHHHHhccccchhhhhhh
Q 007201 136 AFLLKPSGCG----------DE--GNPC-------------------GSHSSLHMALFYLSIYLTALGNGGYQPNIATFG 184 (613)
Q Consensus 136 ~~~~~~~~~~----------~~--~~~~-------------------~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ 184 (613)
|+++-..+. +. ...| +........+++++.++.|+|....++...+|+
T Consensus 88 -Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi 166 (539)
T PF03137_consen 88 -PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI 166 (539)
T ss_dssp -----------------------------------------------------------------SSS------------
T ss_pred -cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence 333322110 00 0011 111222356788999999999999999999999
Q ss_pred hccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhcc---------------------ccc-hhHHHHHHHHHHH
Q 007201 185 ADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFED---------------------EGM-WALGFWASAGSAT 242 (613)
Q Consensus 185 ~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~---------------------~~g-~~~~f~~~~~~~~ 242 (613)
=|..+++. -+...|+++....+|.++|.++++.+.. +.| |+..|++.+.+.+
T Consensus 167 DDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~ 240 (539)
T PF03137_consen 167 DDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLF 240 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99998887 7788999999999999999998886532 123 8888888887777
Q ss_pred HHHHHHHHcCCcccc
Q 007201 243 MALILFLIGTPRYRH 257 (613)
Q Consensus 243 i~~~~~~~~~~~~~~ 257 (613)
+..+.++.+.|+.++
T Consensus 241 l~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 241 LSAIPLFFFPKKLPG 255 (539)
T ss_dssp ---------------
T ss_pred HHHHHHHcCCccCCC
Confidence 766666666555443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-08 Score=109.56 Aligned_cols=169 Identities=15% Similarity=0.138 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 007201 51 ILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSL 130 (613)
Q Consensus 51 l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~ 130 (613)
++...+...+....+...+|.+.++.+|.++...|.+.+.+.+++.++.++.+++.+|+ ++++.+..+.+++.++.+.+
T Consensus 223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~l 301 (524)
T PF05977_consen 223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLL 301 (524)
T ss_pred HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHH
Confidence 33333444444445556788999999999999999999999999999999999999995 99999998888888877777
Q ss_pred HhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHH
Q 007201 131 SVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLAL 210 (613)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~ 210 (613)
++. .+.+...+..++.|++.........+.+-+..|++. ||+.++++++..
T Consensus 302 al~-----------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~~ 352 (524)
T PF05977_consen 302 ALS-----------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMVF 352 (524)
T ss_pred hcc-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHHH
Confidence 765 236667777788888888888888899999999998 999999999999
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 007201 211 NLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFL 249 (613)
Q Consensus 211 ~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~ 249 (613)
..+..+|.++.|.+.+.+|.+..+.++++..+++.++..
T Consensus 353 ~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 353 FGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888877766555554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-09 Score=110.89 Aligned_cols=143 Identities=23% Similarity=0.297 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-hhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007201 49 ILILVNQGLATLAFFGVGVNLVLFLTRVVGQN-NADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGL 127 (613)
Q Consensus 49 ~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~-~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~ 127 (613)
+.++...+.....++....++|.|+.+.+|.+ ..+.+.+.++..+...++.++.|+++||+ |+|+.+........+..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 287 (352)
T PF07690_consen 209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGA 287 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHH
Confidence 33444445555677778899999989999999 79999999999999999999999999996 99888888777776666
Q ss_pred HHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHH
Q 007201 128 VSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFY 207 (613)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~ 207 (613)
+.+.+... ..+....+...++.|++.+...+...+++.|.+|+++ |+++.++++
T Consensus 288 ~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~ 341 (352)
T PF07690_consen 288 LGLLLLPF--------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFN 341 (352)
T ss_dssp HHHCCSHH--------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHH
T ss_pred HHHHHHHH--------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence 66555421 1124555667777889999999999999999999988 999999999
Q ss_pred HHHhHHHHHHH
Q 007201 208 LALNLGSLFSN 218 (613)
Q Consensus 208 ~~~~iG~~~gp 218 (613)
...++|+.+||
T Consensus 342 ~~~~~~~~igP 352 (352)
T PF07690_consen 342 SIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHCC
Confidence 99999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.5e-08 Score=103.37 Aligned_cols=168 Identities=8% Similarity=-0.033 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.++...+..+.....+++...+++.++.+++|++..+.+.......++..++.++.|++.||. +|+..+. +.++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~-~~~~~~~ 293 (394)
T PRK10213 216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAG-APLVLAV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHH-HHHHHHH
Confidence 4445444445555566666667764444567899999999999999999999999999999994 5544343 4343333
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
..+.+... + .+.+.+.+..++.|++.+...+...+++.+..|+ + +++..++
T Consensus 294 ~~~~l~~~---~-------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~ 344 (394)
T PRK10213 294 SALVLTLW---G-------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAGSI 344 (394)
T ss_pred HHHHHHHH---h-------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHHHH
Confidence 32332222 0 1245566677888999998999999899888874 3 4566667
Q ss_pred HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q 007201 206 FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMA 244 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~ 244 (613)
+....++|..+||.++|++.+..|++..+...++..++.
T Consensus 345 ~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 345 QVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 777889999999999999999889888887776544433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4e-08 Score=106.94 Aligned_cols=186 Identities=12% Similarity=-0.008 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+..|.+.+..++....+-++..++|.|+++.+ +.........+..+...+..+++|+|+||+ |++|++.++.+...+
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i 328 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI 328 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence 44677777777777777777779999988755 333344444556778899999999999996 999999999887766
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCc------------
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDP------------ 193 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~------------ 193 (613)
..+...... |. .+..+.+.+.+..+.+.++.|..+.+..-++.+.||+++.
T Consensus 329 ~~~~~~l~l--p~---------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~ 391 (462)
T PRK15034 329 FSALLFLTL--PG---------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQ 391 (462)
T ss_pred HHHHHHHHh--cc---------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhH
Confidence 654433321 21 0113455566665556677777788888888888875100
Q ss_pred ---cccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHHHHHc
Q 007201 194 ---KEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEG-MWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 194 ---~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~-g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
..++.-+...|+......+|+.+-|.+.|...+.. ++...|+...++.+++.++-+..
T Consensus 392 ~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 392 AQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 01112567777888888898989998877766554 48888888877777666655544
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-08 Score=105.29 Aligned_cols=176 Identities=14% Similarity=0.092 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+.+...++..++-+=..-++......|..+.+|++..+...+....++.++++++++|+|.||+ |-|++++.+.++..+
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~ 330 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI 330 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence 3566666667776666667888889999999999999999999999999999999999999995 999999999888777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
..+...+.. ....+++.-.+.|...|..++..=++.++..|+++ -++.+|+
T Consensus 331 ~~~~~~~~~-----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFgl 381 (438)
T COG2270 331 AALYLIFLE-----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGL 381 (438)
T ss_pred HHHHHHHcc-----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeeh
Confidence 665555441 12335555567889999999999999999999988 7899999
Q ss_pred HHHHHhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHHc
Q 007201 206 FYLALNLGSLFSNTILGYFEDEGM-WALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
|.+.......+||.+.+.+.+..| -|..+....++..++++.++..
T Consensus 382 yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v 428 (438)
T COG2270 382 YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRV 428 (438)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence 999999999999999999887665 5666666666666666555443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.8e-08 Score=120.41 Aligned_cols=164 Identities=15% Similarity=0.041 Sum_probs=128.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-hHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNA-DAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~-~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
+.++..++..++.....+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++++.++.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~ 310 (1146)
T PRK08633 232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA 310 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence 3444455555555556667778899999999999999 999999999999999999999999996 99999988887777
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
++.+++.+. .+.+.+++..++.|++.++..+...+++.+.+|++. |+++++
T Consensus 311 ~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~ 361 (1146)
T PRK08633 311 LSLFLLPTA-----------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLA 361 (1146)
T ss_pred HHHHHHHHh-----------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhH
Confidence 776666554 125556677788889988888889999999999998 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhcc-ccchhHHHHHHHH
Q 007201 205 YFYLALNLGSLFSNTILGYFED-EGMWALGFWASAG 239 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~-~~g~~~~f~~~~~ 239 (613)
+.++..++|..+++.+++.+.. .+++...|++.+.
T Consensus 362 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 362 ANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999888877776643 2344445554443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-08 Score=107.04 Aligned_cols=161 Identities=19% Similarity=0.143 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.++.+++..++............+.|.+..+|.+ ...+.+..+..+...++.++.++++||+ |+||++..+..+.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 56667777788888888777888888888888877 4567777788999999999999999996 999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCC--ccccchhhhHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEED--PKEGHSKIAFF 203 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~--~~~~~~r~~~~ 203 (613)
+.+++.+... .+.+.+++..++.|++.+...+...++++|..+.++ .++++ .|..+
T Consensus 303 ~~~~~~~~~~---------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~-~g~~~ 360 (428)
T PF13347_consen 303 GFLLLFFLGP---------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRR-EGMYF 360 (428)
T ss_pred HHHHHHHHHh---------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCc-hHHHH
Confidence 8888877620 247778888889999999999999999999998654 22333 57888
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccch
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMW 230 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~ 230 (613)
+.+.+...+|.++++.+.+.+.+..||
T Consensus 361 s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 361 SVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 899999999999999999887655444
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.4e-08 Score=102.86 Aligned_cols=167 Identities=14% Similarity=-0.026 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCch---HHHHH-HHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRY---KTCAI-FQA 121 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr---~~i~~-~~~ 121 (613)
|.+|.+.+..++....+|++..|+|.|+++ .|++.. .+....+..+.+. +..++++||. .|| +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 667888888999999999999999999964 678764 5555544444444 4458888885 553 33232 222
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
+..+....+... . +....+....+.++......+...++.+|.+|++. |++
T Consensus 266 ~~a~~~~~~~~~---~--------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt 316 (368)
T TIGR00903 266 LIAAFFLALAFE---L--------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGK 316 (368)
T ss_pred HHHHHHHHHHHc---c--------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCc
Confidence 223332232222 0 12223334445556666666778899999999999 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 007201 202 FFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFL 249 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~ 249 (613)
+.++.+...++|+.++|.+.+.+.. |....|.+.++..+++.+...
T Consensus 317 ~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 317 AAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887763 666666666666665555543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-08 Score=105.86 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 007201 64 GVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSG 143 (613)
Q Consensus 64 ~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~ 143 (613)
....++|.|+++..+ ++.+.++..++..+...++....+++.||.++.++.+..+..+..++.+++... +
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~---~------ 295 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV---S------ 295 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh---h------
Confidence 345678888876555 677888887777766665555556666553476777777777777776666554 1
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHH
Q 007201 144 CGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGY 223 (613)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~ 223 (613)
+.+.+.+...+.+++.+...|...+++.+..|+++ |++.+++++...++|..+||.++|+
T Consensus 296 --------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~ 355 (400)
T PRK11646 296 --------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGW 355 (400)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHH
Confidence 23445555667778888888888999999999988 9999999999999999999999999
Q ss_pred hcccc---c-hhHHHHHHHHHHHHHHH
Q 007201 224 FEDEG---M-WALGFWASAGSATMALI 246 (613)
Q Consensus 224 l~~~~---g-~~~~f~~~~~~~~i~~~ 246 (613)
+.+.. + ....++..+...+++.+
T Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (400)
T PRK11646 356 LFDLGKALNQPELPWMMLGIIGLITLL 382 (400)
T ss_pred HHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence 98764 2 24455544444444433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-08 Score=109.11 Aligned_cols=164 Identities=15% Similarity=0.004 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.++.+++..++.....+....+.+.|.+..++ +....+.+.++..+...++.++.++++||+ |+|++++++..+.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 667777777777777777666666655554444 556666677767788899999999999996 999999988877666
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCC--ccccchhhhHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEED--PKEGHSKIAFF 203 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~--~~~~~~r~~~~ 203 (613)
+.+.+......+ ..+.+.+++..++.+++.+...+...++++|..+..+ .++|+ .|..+
T Consensus 309 ~~~~~~~~~~~~------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~-~G~~~ 369 (473)
T PRK10429 309 SCGVLLLMGLAA------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRC-ESIAY 369 (473)
T ss_pred HHHHHHHHhccC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccc-hhHHH
Confidence 655543321101 1235556666677888999888999999999977432 33333 56788
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccch
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMW 230 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~ 230 (613)
++..+...+|.++|+.+.|++.+..||
T Consensus 370 s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 370 SVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 889999999999999999988765555
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.9e-08 Score=101.56 Aligned_cols=173 Identities=13% Similarity=0.066 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------CCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVV-------------------GQNNADAANNVSKWTGTVYIFSLLGAFLS 106 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~l-------------------g~~~~~~~~~~~~~~~~~~~~~~~~G~ls 106 (613)
|..+.+..+-|.+.++||++.-......+... ..+...-..-..+.++.-+-+.++.+++.
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 44566777778899999998765544433211 11112222234456777888999999999
Q ss_pred hhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhc
Q 007201 107 DSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGAD 186 (613)
Q Consensus 107 Dr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 186 (613)
||+ |||+++....+++.+.++++....+ +. ....+++.+|+... +...+.+.|..|
T Consensus 406 erl-GRKkTMal~l~~f~iflfll~~c~~-rn------------------~~tvllf~arafis----g~fqvaYvYtPE 461 (528)
T KOG0253|consen 406 ERL-GRKKTMALSLILFGIFLFLLTTCKT-RN------------------AYTVLLFTARAFIS----GAFQVAYVYTPE 461 (528)
T ss_pred HHh-cchhHHHHHHHHHHHHHHHHHHhcC-cc------------------hhHHHHHHHHHHHh----chheEEEEecCc
Confidence 995 9999999999999888887776521 11 22345566666553 344567889999
Q ss_pred cCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 187 QFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 187 ~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
.+|+.. |+++.|.-.....+|+++.|.++ +....+-..+..+.+.+.+++.+...+
T Consensus 462 VyPTav------RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcf 517 (528)
T KOG0253|consen 462 VYPTAV------RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCF 517 (528)
T ss_pred ccchhh------hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHhee
Confidence 999999 99999999999999999999988 332233444555555555555555444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.1e-08 Score=119.31 Aligned_cols=183 Identities=13% Similarity=-0.057 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+.++...+..++..+.++++..++|.|+++.+|.++.+++++.+.+.++..++.++.|+++|++ ++++.+..+.++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence 5566666666777777778889999999999999999999999999999999999999999986 777766666555544
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCC--CCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPC--GSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
+.+.+.+... ....+.. +.-. ......+.+.++++.++.|++.+...+...+++.+.+|++. ||+++
T Consensus 304 ~~~~l~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~ 372 (1140)
T PRK06814 304 FGLDLAFASS-SVPAEPA----QLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVI 372 (1140)
T ss_pred HHHHHHhccc-ccccccc----cccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeee
Confidence 4443333100 0000000 0000 00000234566677788899999999999999999999999 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhcc-ccchhHHHHHHHHH
Q 007201 204 SYFYLALNLGSLFSNTILGYFED-EGMWALGFWASAGS 240 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~-~~g~~~~f~~~~~~ 240 (613)
+.+++..++|..+++++.+.+.. ..++...+++.+++
T Consensus 373 g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 373 AANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999999999999998863 44566555554443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-06 Score=89.12 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=105.7
Q ss_pred HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCC
Q 007201 74 TRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGS 153 (613)
Q Consensus 74 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (613)
.++.|++..+.+.+.....+...+..++.|.++||+ ||||..++.+++..++.+.--.
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~--------------------- 118 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS--------------------- 118 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc---------------------
Confidence 357899999999999999999999999999999996 9999999998888877653322
Q ss_pred CCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCC-CccccchhhhHHHHHH-HHHhHHHHHHHHHHHHhccccc--
Q 007201 154 HSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEE-DPKEGHSKIAFFSYFY-LALNLGSLFSNTILGYFEDEGM-- 229 (613)
Q Consensus 154 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~-~~~~~~~r~~~~~~~~-~~~~iG~~~gp~l~g~l~~~~g-- 229 (613)
.+...++++|++.|++.....++.-+.+.....++ .+++. .+.-++... ....+-++.+..++-++++..+
T Consensus 119 ---~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~--L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g 193 (354)
T PF05631_consen 119 ---SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEW--LSDTFSLATFFGNGVVAIGAGVVANVLADWFGFG 193 (354)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCC
Confidence 23788999999999999988887766553333222 22111 333343322 2233334444455556665554
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCC
Q 007201 230 WALGFWASAGSATMALILFLIGTP 253 (613)
Q Consensus 230 ~~~~f~~~~~~~~i~~~~~~~~~~ 253 (613)
...+|..+..+..++.+++...++
T Consensus 194 ~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 194 PVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred CcchHHHHHHHHHHHHHHHHhccc
Confidence 367888888777777666555444
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.6e-08 Score=103.81 Aligned_cols=189 Identities=15% Similarity=0.049 Sum_probs=125.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
.+..++.+...+...+..-....+....+-+.-|++..++.+.+........++.+++.++.||+ |||+.++.+..+..
T Consensus 268 R~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~ 346 (485)
T KOG0569|consen 268 RRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMA 346 (485)
T ss_pred hHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHH
Confidence 34555666666665554433333444444557899999999999999999999999999999996 99999999998888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHH---HHHHHHHHHHHhcc-ccchhhhhhhhccCCCCCccccchhh
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMA---LFYLSIYLTALGNG-GYQPNIATFGADQFDEEDPKEGHSKI 200 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~g~g~g-~~~~~~~~~~~~~~p~~~~~~~~~r~ 200 (613)
+..+++........ ....| ..+++.++..+..+ +..|..+-+.+|.+|++. |.
T Consensus 347 ~~~~~~~~~~~l~~-----------------~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~ 403 (485)
T KOG0569|consen 347 VALLLMSIALFLSN-----------------SFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RS 403 (485)
T ss_pred HHHHHHHHHHHHHH-----------------HhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hH
Confidence 77766665432222 01011 22344444444443 246777889999999998 99
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCccccc
Q 007201 201 AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHF 258 (613)
Q Consensus 201 ~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 258 (613)
.++++......+...+-......+.+.+|- +.|.+..+...+..+..+...|+++++
T Consensus 404 aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 404 AAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 999987777766666665566666666664 344444444444445555555655443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-07 Score=95.21 Aligned_cols=173 Identities=20% Similarity=0.128 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+..|.+.+-.-+++..+|.++.|+|.++. +.|+|+.++|+.++..++......+.+-.+++|.-.+|+........+.+
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~ 286 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV 286 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 44566666667899999999999999987 78999999999999999999999999999999865788888888888888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
|.+.+.+. |. .+ .+...+++|+|.|+..+....++.+..++.+ + -++..++
T Consensus 287 G~~G~~~~---P~------------------~~---~~lw~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~LSgm 337 (395)
T COG2807 287 GLVGLLLA---PG------------------QL---PILWALLLGLGQGGAFPLALTLILLRSSDAA--I---AAALSGM 337 (395)
T ss_pred HHHHHHHh---hh------------------hH---HHHHHHHHhCccchHHHHHHHHHHhhcCChH--H---HHHHHHH
Confidence 88888776 33 11 2222578999999999999999999876544 1 4566667
Q ss_pred HHHHHhHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHHH
Q 007201 206 FYLALNLGSLFSNTILGYFEDEG-MWALGFWASAGSATMALILF 248 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~-g~~~~f~~~~~~~~i~~~~~ 248 (613)
.+-...+=+++||.+.|++.|.. +|+..++..+...++..+.-
T Consensus 338 aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 338 AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 77777888889999999998865 48877666555544444433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.3e-08 Score=101.96 Aligned_cols=145 Identities=14% Similarity=0.077 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHH-HHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 47 AGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWT-GTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 47 ~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
.++.+.+..++....++...++++.|+++ +|+++.+.+.+.++.. +...++.+++|+++||+ |||+.++.+.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 46666666677788888899999999987 9999999998887765 56789999999999996 999999988887776
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
+..++.+..+..... +....+.+.+..+.++.+++.+...+...+++.|.+|+++ |++.+++
T Consensus 288 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 349 (356)
T TIGR00901 288 TNAGFVWLASNGHHD------------GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMAL 349 (356)
T ss_pred HHHHHHHHHhcCccc------------ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHH
Confidence 665544431100000 0000124556667778899999999999999999999999 9999999
Q ss_pred HHHHHh
Q 007201 206 FYLALN 211 (613)
Q Consensus 206 ~~~~~~ 211 (613)
++...|
T Consensus 350 ~~~~~~ 355 (356)
T TIGR00901 350 LSSLSA 355 (356)
T ss_pred HHHHHh
Confidence 877655
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-07 Score=99.02 Aligned_cols=149 Identities=10% Similarity=0.002 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007201 47 AGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIG 126 (613)
Q Consensus 47 ~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~ 126 (613)
..+..++..++.....+.+..+.+.++.+..|.++.+.+.+.....++..++.+++|++.||+ |||+++.++..+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~ 273 (377)
T PRK11102 195 RVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIM 273 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 344444455555566667777778888888999999999999999999999999999999996 9999999887765443
Q ss_pred HHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHH
Q 007201 127 LVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYF 206 (613)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~ 206 (613)
.+.+......+ .+.+...++..+.+.+.+...+.....+.|..| +. +++..++.
T Consensus 274 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~ 327 (377)
T PRK11102 274 GIWLVVSALLD-------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLA 327 (377)
T ss_pred HHHHHHHHHHh-------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHH
Confidence 33222221001 123333444444444455555566667777766 45 77888875
Q ss_pred HHH-HhHHHHHHHHHHH
Q 007201 207 YLA-LNLGSLFSNTILG 222 (613)
Q Consensus 207 ~~~-~~iG~~~gp~l~g 222 (613)
+.. ..+|..+++.+++
T Consensus 328 ~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 328 GTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 543 3566777766544
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.1e-07 Score=98.99 Aligned_cols=159 Identities=9% Similarity=-0.109 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccc
Q 007201 60 LAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLL 139 (613)
Q Consensus 60 ~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~ 139 (613)
.........++.|+++.+|.++.+.+.+.....++..++.++.+++.||+ ++++++..+.. ..+..+.+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~------ 290 (393)
T PRK11195 219 GAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQ------ 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHH------
Confidence 34445555667888888999999999999999999999999999999996 99998887743 33333333332
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHH
Q 007201 140 KPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNT 219 (613)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~ 219 (613)
.+.+...+..++.|++.+...+...+.+.+..|++. +++++.++.+...++|..++..
T Consensus 291 -----------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~ 348 (393)
T PRK11195 291 -----------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLG 348 (393)
T ss_pred -----------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHH
Confidence 124555566667888888888878888877644432 1689999999999999999999
Q ss_pred HHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 007201 220 ILGYFEDEGMWALGFWASAGSATMALILFL 249 (613)
Q Consensus 220 l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~ 249 (613)
+.+.+ +..|-+..+.+.+...++.....+
T Consensus 349 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 349 LYSLL-VKLGVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred HHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 88866 456766666665555544444433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.1e-08 Score=106.79 Aligned_cols=132 Identities=18% Similarity=0.028 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHH
Q 007201 89 SKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYL 168 (613)
Q Consensus 89 ~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (613)
.+..+...++.+++++++||+ |||+++.++.++..++.+++.+. +. ...+...+..++
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~---~~------------------~~~~~~~~~~~~ 419 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFV---PV------------------DLYFLRTALAVL 419 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHc---CC------------------CchHHHHHHHHH
Confidence 345566778889999999996 99999999888877777666654 21 112333344445
Q ss_pred HHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q 007201 169 TALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILF 248 (613)
Q Consensus 169 ~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~ 248 (613)
.+++.+...+....+.+|.+|++. |++++++.+....+|+.++|.+.+ +. ..++..++++.+.+.+++.+..
T Consensus 420 ~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
T TIGR00898 420 GKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILT 491 (505)
T ss_pred HHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHH
Confidence 556666667888899999999998 999999999999999999999988 43 3455666666665555554444
Q ss_pred HH
Q 007201 249 LI 250 (613)
Q Consensus 249 ~~ 250 (613)
++
T Consensus 492 ~~ 493 (505)
T TIGR00898 492 LF 493 (505)
T ss_pred Hc
Confidence 43
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-07 Score=104.55 Aligned_cols=162 Identities=10% Similarity=0.083 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.++...+..++....++......+.|+++.+|.++...+.......++..++.++.++++||+ |+|+++.++.++..+
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 4566666666667777777777777788888887766555544444566788899999999996 999999999888887
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCC--ccccchhhhHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEED--PKEGHSKIAFF 203 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~--~~~~~~r~~~~ 203 (613)
+.+.+.+. +. .+.+.+++..++.++|.+...+...++.+|..|.++ .++|+ +|..+
T Consensus 307 ~~~~~~~~---~~------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~-~G~~~ 364 (448)
T PRK09848 307 GYLLFFWV---SV------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRI-EGLTY 364 (448)
T ss_pred HHHHHHHc---Cc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccc-hhHHH
Confidence 77666553 21 235556667778899999999999999999887543 22222 58889
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccch
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMW 230 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~ 230 (613)
+.+++...+|.++|+.+.+.+.+..||
T Consensus 365 ~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 365 SLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999877655444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.6e-07 Score=95.87 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhc
Q 007201 56 GLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSY 135 (613)
Q Consensus 56 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~ 135 (613)
......++.+..+.|.|++ +.|+++.+.+.......++..++.++++++.||+ |+|+.+....+...++.+.+.....
T Consensus 213 ~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (401)
T PRK11043 213 AACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASL 290 (401)
T ss_pred HHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777888875 5799999999888777888889999999999996 9999876665555544433322211
Q ss_pred ccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHH
Q 007201 136 AFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSL 215 (613)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~ 215 (613)
.+. .+....+....+.+++.+...+.......+..|+ + |+++.++++.....++.
T Consensus 291 ~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~~~~~ 345 (401)
T PRK11043 291 LSH------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQNTLQLGLCF 345 (401)
T ss_pred hcc------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHHHHHHHHHHH
Confidence 011 1234444555667788888888888777777763 5 88999999888888888
Q ss_pred HHHHHHHHhccccchhH
Q 007201 216 FSNTILGYFEDEGMWAL 232 (613)
Q Consensus 216 ~gp~l~g~l~~~~g~~~ 232 (613)
+++.+.|.+.+......
T Consensus 346 ~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 346 LASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHccCCChhHH
Confidence 88888888876443433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-07 Score=99.23 Aligned_cols=179 Identities=11% Similarity=0.046 Sum_probs=139.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVG---QNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA 121 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg---~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~ 121 (613)
-|.+|.+.+........++++-...+.|.+..++ .++...|...+.-.+.-.+...+..++-+|+ |.|+.++++..
T Consensus 219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~ 297 (412)
T PF01306_consen 219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV 297 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence 3677777776666666777776678888875443 3345567777777778888888999999995 99999999998
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
+..+=..+++++ .+++.+.+...+.++-.+....+..-++++.+|++. .++
T Consensus 298 i~~iRi~~~~~~-----------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt 348 (412)
T PF01306_consen 298 IMAIRIIGSGFA-----------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SAT 348 (412)
T ss_dssp HHHHHHHHHHT-------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHH
T ss_pred HHHHHHHHHhhh-----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHH
Confidence 888877777776 237778899999999999999999999999999887 778
Q ss_pred HHHH-HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCC
Q 007201 202 FFSY-FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTP 253 (613)
Q Consensus 202 ~~~~-~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 253 (613)
...+ ++.+..+|..+.+.++|++.|+.|++..|++.+.+++...++..+..+
T Consensus 349 ~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 349 LYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 8887 578889999999999999999999999998877766655555444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.5e-08 Score=101.92 Aligned_cols=141 Identities=16% Similarity=0.108 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007201 47 AGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIG 126 (613)
Q Consensus 47 ~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~ 126 (613)
.++.+.+..+......+.+..+++.|+++.+|.++.+++.+.....+...++.+++|+++||+ |||+.+..+..+...+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~ 304 (366)
T TIGR00886 226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG 304 (366)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence 355555556666667778889999999999999999999999999999999999999999996 9999888777666666
Q ss_pred HHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHH
Q 007201 127 LVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYF 206 (613)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~ 206 (613)
..++.+... + ..+....+....+.+++.|...+...++.++.+| ++ +++..|+.
T Consensus 305 ~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~~ 358 (366)
T TIGR00886 305 AFLVVLGLV-S------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGLV 358 (366)
T ss_pred HHHHHhcCC-C------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHHH
Confidence 555544310 0 0024444455555566666666777788888887 34 88999998
Q ss_pred HHHHhHHH
Q 007201 207 YLALNLGS 214 (613)
Q Consensus 207 ~~~~~iG~ 214 (613)
+...++|+
T Consensus 359 ~~~~~~g~ 366 (366)
T TIGR00886 359 GAIGNLGG 366 (366)
T ss_pred HHhccCCC
Confidence 88777763
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-07 Score=105.44 Aligned_cols=176 Identities=18% Similarity=0.126 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccC--chHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWG--RYKTCAIFQAIF 123 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G--rr~~i~~~~~l~ 123 (613)
+.++.+++...+..+.++....+++.|.. .+|++..+++..+++..+...++.++.|+++|+. . ++.+..++.++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 57778888888888999888899999987 8999999999999999999999999999999995 6 333444444455
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
.++.+.+++. .+.+.+...-++.|+..|...+..+..+.|..+.++ ...++
T Consensus 376 gl~~~~~p~~-----------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~ 426 (509)
T KOG2504|consen 376 GLARLFLPFA-----------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAY 426 (509)
T ss_pred HHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHH
Confidence 5555555555 235667777788899999888888889999999998 88999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHHcC
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGM-WALGFWASAGSATMALILFLIGT 252 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~ 252 (613)
|+..+...++..+||.++|++.+..+ |...|+.+++..+++...+++..
T Consensus 427 Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 427 GLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999999988877 99999999988887776665544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.6e-07 Score=96.05 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 007201 61 AFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVS 133 (613)
Q Consensus 61 ~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~ 133 (613)
..+....+.+.|+++++|+++.+.+.......++..++.++.|++.||+ |||+++.++..+..++.+.+.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 218 VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455667788888999999999999999999999999999999996 99999999988877777766654
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-06 Score=95.01 Aligned_cols=181 Identities=14% Similarity=0.071 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.+++.++..++...+.-....+.+.|+++.-|.+....+...++..+.-.+.-...+++-.|+ |.|++++++.+..++
T Consensus 207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~v 285 (400)
T PF03825_consen 207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAV 285 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 3344455555666666666677888898754447777777777777777778888899999995 999999999988887
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
=..+++..+. |. ........+...+.|+..|....+...++.+.+|++. |+++.++
T Consensus 286 R~~l~a~~~~-~~-----------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l 341 (400)
T PF03825_consen 286 RWLLYAYFSD-PW-----------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGL 341 (400)
T ss_pred HHHHHHHhcC-Cc-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHH
Confidence 6666665511 11 0111223334456899999999999999999999999 9999999
Q ss_pred HHHH-HhHHHHHHHHHHHHhccccchh------HHHHHHHHHHHHHHHHHHHc
Q 007201 206 FYLA-LNLGSLFSNTILGYFEDEGMWA------LGFWASAGSATMALILFLIG 251 (613)
Q Consensus 206 ~~~~-~~iG~~~gp~l~g~l~~~~g~~------~~f~~~~~~~~i~~~~~~~~ 251 (613)
+... ..+|.++|..++|++.+.+|.+ ..+.+.+.+.++..+++.+.
T Consensus 342 ~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 342 YSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 7764 5899999999999999876644 34444444444444444443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.2e-07 Score=98.18 Aligned_cols=161 Identities=14% Similarity=0.038 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.++.+++..++............+.|.+..++. +...+.+.....+...++.++.++++||+ |+|+.+..+.++..+
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 306 (444)
T PRK09669 229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVI 306 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 3344444444444444433333333343433432 33344455556677778889999999996 999999988766554
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCC--ccccchhhhHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEED--PKEGHSKIAFF 203 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~--~~~~~~r~~~~ 203 (613)
+...+.+. +. .+.+.+++..++.+++.+...+..+++++|..+.++ .++++ .+..+
T Consensus 307 ~~~~~~~~---~~------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~-~g~~~ 364 (444)
T PRK09669 307 LSALIFFI---PP------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRL-DGLVF 364 (444)
T ss_pred HHHHHHHh---Cc------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCc-chHHH
Confidence 43333332 11 235566777778899999999999999999987433 33333 56788
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccch
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMW 230 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~ 230 (613)
+.+.+..++|.++|+.++|++.+..||
T Consensus 365 s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 365 STNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 889999999999999999988766665
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.5e-05 Score=83.33 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 007201 88 VSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIY 167 (613)
Q Consensus 88 ~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (613)
..+......+..++++.+-|+. |.|+.+.++...+....+.+... +.+.++..-.
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~------------------------N~y~~yfssa 110 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP------------------------NSYYLYFSSA 110 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc------------------------chHHHHHHHH
Confidence 6777888889999999999995 99999999988777665555443 2567888999
Q ss_pred HHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHH
Q 007201 168 LTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFS 217 (613)
Q Consensus 168 l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~g 217 (613)
++|+|.+..+.....++++..+++. +++..++.-...+.+..+|
T Consensus 111 llG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~G 154 (461)
T KOG3098|consen 111 LLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIG 154 (461)
T ss_pred HhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998877 6666666433444444444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-06 Score=93.92 Aligned_cols=164 Identities=12% Similarity=-0.002 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRV-VGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIG 126 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~ 126 (613)
++..++..++......+..++++.|+.+. .+.+...++...+.+..+..++.+++|+++||+ ++||++.+..++..+.
T Consensus 234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL 312 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 33344444554455556678899998653 255555566667777788899999999999996 9999998887777777
Q ss_pred HHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHH
Q 007201 127 LVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYF 206 (613)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~ 206 (613)
.++..+. +. .. ......+.++..+.++|...+...+..+++. . ++.+..
T Consensus 313 ~ll~~~~---~~--------------------~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~-~~s~~l 361 (410)
T TIGR00885 313 CLGSIFA---GG--------------------HV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------K-YGAAGL 361 (410)
T ss_pred HHHHHHc---CC--------------------hH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------h-hhHHHH
Confidence 6666654 11 11 2445566778888888999999999998665 2 222233
Q ss_pred HHHHhHHHHHHHHHHHHhcccc------chhHHHHHHHHHHHHH
Q 007201 207 YLALNLGSLFSNTILGYFEDEG------MWALGFWASAGSATMA 244 (613)
Q Consensus 207 ~~~~~iG~~~gp~l~g~l~~~~------g~~~~f~~~~~~~~i~ 244 (613)
.++. +|+++.|.+.|++.|.. +.+..|++...+.+..
T Consensus 362 ~~~~-~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 362 VMAI-IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred HHHH-hccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence 3333 99999999999999843 4778888776665443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.5e-06 Score=88.94 Aligned_cols=143 Identities=8% Similarity=0.023 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccC
Q 007201 61 AFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLK 140 (613)
Q Consensus 61 ~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~ 140 (613)
....+....+.|+++.+|.++.+.+.......++..++.++.+++.||+ |++... +.....++.+.+..... ..
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~-~~-- 295 (394)
T PRK11652 222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGW-FG-- 295 (394)
T ss_pred HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHH-hc--
Confidence 3333445567788888999999999888888888888888999999996 733322 22222222222111100 00
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHH
Q 007201 141 PSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTI 220 (613)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l 220 (613)
..+.+.+....++.+++.+...+...+...|.+|+ + +++..++.+...++|+.+++.+
T Consensus 296 ---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~ 353 (394)
T PRK11652 296 ---------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALL 353 (394)
T ss_pred ---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHH
Confidence 01245566677788888888899999999998873 4 7888999998999999999999
Q ss_pred HHHhccccchh
Q 007201 221 LGYFEDEGMWA 231 (613)
Q Consensus 221 ~g~l~~~~g~~ 231 (613)
.+.+.....+.
T Consensus 354 ~~~~~~~~~~~ 364 (394)
T PRK11652 354 SAMLPQTGQFS 364 (394)
T ss_pred HHHccCCchHH
Confidence 99887654444
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.9e-08 Score=103.95 Aligned_cols=180 Identities=14% Similarity=0.157 Sum_probs=134.3
Q ss_pred HHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCCh
Q 007201 364 LLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTE 443 (613)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~ 443 (613)
+..+++.++.-++=.+..++.+.....+.+.+ .-..++++.+-.+..+++.|+.+.+ .+|++|+.
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~----~s~~Gll~~vf~v~~~i~sPl~gyL----adryNR~~------- 99 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNIS----DSELGLLQTVFIVVFMIASPLFGYL----ADRYNRKR------- 99 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCC----chhccchhHHHHHHHHHHHHHHHHH----HhhcCcce-------
Confidence 44456666666666555555433322222222 1123566777778888999999987 67877665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHH
Q 007201 444 LQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKS 523 (613)
Q Consensus 444 ~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg 523 (613)
.+.+|..+..++.+..++.. ++|.+.+.-.+.|+||....|...+++++.+|.+.|+
T Consensus 100 --v~~vG~~iW~~Av~~~~fs~---------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs 156 (493)
T KOG1330|consen 100 --VIAVGIFIWTLAVFASGFSN---------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRS 156 (493)
T ss_pred --EEeeHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhh
Confidence 78899999999998887653 5566667778999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 007201 524 FGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKY 593 (613)
Q Consensus 524 ~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~ 593 (613)
+..+++++...+|..+|-.....+.+.+.. | ++.|+..++++++++++..++.++-.+
T Consensus 157 ~~~~ify~~ipvGsglG~vvgs~va~~~~~--W----------r~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 157 RVLGIFYFAIPVGSGLGYVVGSVVASLTFW--W----------RWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred HHHHHhhhhcccccceeEEeeeeeccCccc--e----------EEEEEeehHHHHHHHHHHHhhccCccc
Confidence 999999999999998887666655543311 3 456888899999998888888776443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.4e-06 Score=90.59 Aligned_cols=185 Identities=10% Similarity=-0.033 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh----HHHHHHHHHHHHHHHHHHHH----HHhhhccCchHHH--H
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNAD----AANNVSKWTGTVYIFSLLGA----FLSDSYWGRYKTC--A 117 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~----~~~~~~~~~~~~~~~~~~~G----~lsDr~~Grr~~i--~ 117 (613)
++.+++...+....+.-..+.++.|..+..+.+... .+++.++-.+...+.+++.. ++.||..+.+... .
T Consensus 274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~ 353 (475)
T TIGR00924 274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT 353 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence 344444444444555555566788887765544222 45666666666666666644 4555421333333 6
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccc
Q 007201 118 IFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGH 197 (613)
Q Consensus 118 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~ 197 (613)
+|.++..++...+++...... .....+.+++++..++.++|+....|...+++++..|++.
T Consensus 354 ~G~~l~~~~~~~~~~~~~~~~--------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~----- 414 (475)
T TIGR00924 354 LGMLFCGASFLTFAASIWFAD--------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL----- 414 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-----
Confidence 677777777766654311000 0112468889999999999999999999999999999998
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcC
Q 007201 198 SKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGT 252 (613)
Q Consensus 198 ~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 252 (613)
|++.+++++....+|..+++.+........+|...|...+...++..++.+...
T Consensus 415 -~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 415 -MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888776666777777766665555555444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-05 Score=85.85 Aligned_cols=137 Identities=16% Similarity=0.256 Sum_probs=95.1
Q ss_pred ccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCc
Q 007201 405 SMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKAS 484 (613)
Q Consensus 405 ~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (613)
....++..+=+++-++..++ .+|+|+.. .+..|+.+..+=++.+.+++
T Consensus 410 v~~a~~~~gEI~~~ffs~kl----I~kiGHv~---------v~~lgLa~~~~Rf~~~S~L~------------------- 457 (618)
T KOG3762|consen 410 VVSALCHAGEILFYFFSFKL----IEKIGHVN---------VMYLGLACNVGRFLYYSYLQ------------------- 457 (618)
T ss_pred ehhhhhccchHHHHHHHHHH----HHHhcccc---------eeeehhhHHHHHHHHHHHhc-------------------
Confidence 34445555556665665655 67776554 66677777766666665542
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHH-HHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCc
Q 007201 485 TLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMT-SISLGNYVSSLLVTIVMKISTRPGWIPGNLNK 563 (613)
Q Consensus 485 ~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~-~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~ 563 (613)
++|...+.-+++|+....+....-+++...+||++|.+++|+... .-++|-.+|+++.+.+....
T Consensus 458 --n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f------------ 523 (618)
T KOG3762|consen 458 --NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF------------ 523 (618)
T ss_pred --CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee------------
Confidence 556667777999999999998899999999999999999999774 55677777877776554322
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh
Q 007201 564 GHLDRFYFLLAALTTADLFIYIICA 588 (613)
Q Consensus 564 ~~~~~~f~~~a~~~~~~~~~~~~~~ 588 (613)
+....|...++.+++.++.+..+-
T Consensus 524 -g~~ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 524 -GARTTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 224567777776666665554443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-05 Score=88.74 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.++.++...++..............|.+..+|. +...+.+...+.+...++.+++++++||+ |+|+++..+..+..+
T Consensus 228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAV 305 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 3444444444444444444444444444544553 33445667777888889999999999996 999988765554444
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCC--CccccchhhhHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEE--DPKEGHSKIAFF 203 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~--~~~~~~~r~~~~ 203 (613)
..+++.+. |. .+...+++..++.+++.+...+...++++|..+.. +.++|+ -+..+
T Consensus 306 ~~~~~~~~---~~------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~-~g~~~ 363 (460)
T PRK11462 306 ISLAMFFV---PM------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRL-TGISF 363 (460)
T ss_pred HHHHHHHh---ch------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCc-hHHHH
Confidence 33333332 11 11223344445567777776777778888877633 233332 34556
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccch
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMW 230 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~ 230 (613)
+...+...+|.++|+.++|++....||
T Consensus 364 a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 364 AGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 677788999999999998877654444
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-05 Score=84.77 Aligned_cols=171 Identities=22% Similarity=0.213 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 007201 52 LVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLS 131 (613)
Q Consensus 52 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~ 131 (613)
+...+..+++++.--..+=+|--+.+|++..|....+..+..+..++....|++..|-.+++++..+++....++..++.
T Consensus 214 ~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii 293 (403)
T PF03209_consen 214 FVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII 293 (403)
T ss_pred HHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 33344555666555566667888899999999999999999999999999999988556999999999998888887777
Q ss_pred hhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHh
Q 007201 132 VSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALN 211 (613)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~ 211 (613)
++... .+.+.+..+.+++|++.|.......+..-|..++++ -|..++.+..+..
T Consensus 294 ~a~~~--------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA 347 (403)
T PF03209_consen 294 LAGPL--------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQA 347 (403)
T ss_pred HHHhc--------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHH
Confidence 76432 237889999999999999999999999999998887 7899999999999
Q ss_pred HHHHHHHHHHHHhccc----------cchhHHHHHHHHHHHHHHHHH
Q 007201 212 LGSLFSNTILGYFEDE----------GMWALGFWASAGSATMALILF 248 (613)
Q Consensus 212 iG~~~gp~l~g~l~~~----------~g~~~~f~~~~~~~~i~~~~~ 248 (613)
+..++|..++|.+.|. .+|...|.+-++..+++++++
T Consensus 348 ~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 348 IARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888876442 246667777666665555444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6e-06 Score=89.24 Aligned_cols=161 Identities=19% Similarity=0.156 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.++.+++..++...++....+....|.+..+|.++...............++.++...+++|+ |+|+++.++.++.++
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i 314 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV 314 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence 4555555555666555555556667777777888888888888888888888899999999995 999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCC--ccccchhhhHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEED--PKEGHSKIAFF 203 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~--~~~~~~r~~~~ 203 (613)
+.+++.+. |. .+..++++..++.++|.+...+..+++++|..+-.+ .++|+ -|..+
T Consensus 315 ~~~~~~f~---~~------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~-eGi~~ 372 (467)
T COG2211 315 GYLLLYFT---PA------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRR-EGIVY 372 (467)
T ss_pred HHHHHHhh---cC------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCc-hhhHH
Confidence 99998887 21 346778888889999999999999999999886433 45554 46677
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccc
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGM 229 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g 229 (613)
+.+.+..-+|.+++..+.|++....|
T Consensus 373 s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 373 SGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77888888899888888887755444
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-05 Score=78.71 Aligned_cols=181 Identities=13% Similarity=0.121 Sum_probs=116.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
|-.+.....++ ....+.|.+..+- ..+++.+|+|.+|...+...-.++..++ ++.|.+.|++ |.+.++.+|.+...
T Consensus 2 W~~l~a~~~v~-~~~Gt~Y~Fs~yS-~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~ 77 (250)
T PF06813_consen 2 WLSLVASIWVQ-LCSGTTYTFSAYS-PQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGF 77 (250)
T ss_pred hhhHHHHHHHH-HhcCcccchhhhh-HHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHH
Confidence 33343333433 3334556665444 4668899999999999999999998875 8889999996 99999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
+|+..+.++-. . .....+.|.+.+..++.+.+.+....+......+.||+ + ||++.+
T Consensus 78 ~GY~~~~l~~~--~--------------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvg 134 (250)
T PF06813_consen 78 VGYGLLWLAVS--G--------------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVG 134 (250)
T ss_pred HHHHHHHHHHh--C--------------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceeh
Confidence 99988887621 1 11123456666666666666655555555666689985 5 899999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcC
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGT 252 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 252 (613)
+.-....+++++-..+...+.....-...+........++++..++.+
T Consensus 135 ilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 135 ILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred hhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence 876666777665544444443322222233333333344444444443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.3e-06 Score=72.75 Aligned_cols=134 Identities=18% Similarity=0.195 Sum_probs=92.8
Q ss_pred cchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccch
Q 007201 408 SFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLS 487 (613)
Q Consensus 408 ~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 487 (613)
....+..++..++.+++ .+|.+||. .+..+..+..++.+..... .+
T Consensus 5 ~~~~~~~~~~~~~~g~~----~d~~g~~~---------~~~~~~~~~~~~~~~~~~~---------------------~~ 50 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLL----TDRFGRKP---------VLLVGLFIFVLSTAMFALS---------------------SN 50 (141)
T ss_pred EeehhHHHHHHhhHHHH----HhhcchhH---------HHHHHHHHHHHHHHHHHHh---------------------cc
Confidence 34455666777777766 45554433 4555666666665555432 13
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhH
Q 007201 488 IFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLD 567 (613)
Q Consensus 488 ~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 567 (613)
.+......++.+++.+...+....++.+..|++.|++++++.+....++..+++.+.+.+.+.. +++
T Consensus 51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------~~~ 117 (141)
T TIGR00880 51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL-------------GWR 117 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-------------chH
Confidence 4455667788899988888999999999999999999999999999999999999888664311 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 007201 568 RFYFLLAALTTADLFIYIICA 588 (613)
Q Consensus 568 ~~f~~~a~~~~~~~~~~~~~~ 588 (613)
..|++.+++.+++.+..++..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 118 APFLFLAILALAAFILLAFLL 138 (141)
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 566766666666655554443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.9e-05 Score=84.22 Aligned_cols=171 Identities=16% Similarity=0.022 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.++...+..++....++.+..+.|.|+++.+|.+..+.++.......+..++..+.+.+.++. +++|.+.....+..+
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i 296 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence 5666666666777777888888889999999999999999988777778888777777766553 454544433333344
Q ss_pred HHHHHHhhhc-ccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 126 GLVSLSVSSY-AFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
+..++..... .++ +....+++.++.++|.+...++.....- .+.+.+ ++++.+
T Consensus 297 g~~l~~~~~~~~~~-------------------~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~a~a 350 (413)
T PRK15403 297 GLALLIVGNLLWPH-------------------VWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGTVSA 350 (413)
T ss_pred HHHHHHHHHHHccc-------------------cHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcHHHH
Confidence 4333332210 011 2333566777788888887777765332 222221 667778
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMA 244 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~ 244 (613)
+++.....+...++.+.+++... +-..+|....++..+.
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 351 SLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 87878788888888888888654 4455555554444333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-05 Score=82.88 Aligned_cols=140 Identities=19% Similarity=0.229 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 007201 63 FGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPS 142 (613)
Q Consensus 63 y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~ 142 (613)
-.+.+|++.|+.+..|++..++...++.+..+.+++.+++-++-.|+ -..|.+.+......+..+...++.
T Consensus 253 va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l~~-------- 323 (422)
T COG0738 253 VAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVALIG-------- 323 (422)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 34568899999988999999999999999999999999999998895 999998887766555555555541
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHH
Q 007201 143 GCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILG 222 (613)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g 222 (613)
+. ..+.+.++.|+..+..+|++.+...+..|++. +..|..-....+|+++-|.+-|
T Consensus 324 ---------------g~-v~~~~l~~ig~F~simfPTIfslal~~l~~~t--------s~~s~~l~maivGGAiiP~l~G 379 (422)
T COG0738 324 ---------------GV-VALYALFLIGLFNSIMFPTIFSLALKNLGEHT--------SVGSGLLVMAIVGGAIIPPLQG 379 (422)
T ss_pred ---------------Ch-HHHHHHHHHHHHhHHHHHHHHHHHHhccCccc--------cccceeeeeheecchHHHHHHH
Confidence 12 23344567788889999999999999999544 2222233355689999999999
Q ss_pred HhccccchhHHHH
Q 007201 223 YFEDEGMWALGFW 235 (613)
Q Consensus 223 ~l~~~~g~~~~f~ 235 (613)
++.|..|-...+.
T Consensus 380 ~i~d~~g~~~~~~ 392 (422)
T COG0738 380 VIADMFGIQLTFL 392 (422)
T ss_pred HHHHhhhhHHHHH
Confidence 9999988877666
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.23 E-value=4e-05 Score=84.14 Aligned_cols=208 Identities=14% Similarity=-0.004 Sum_probs=139.7
Q ss_pred ecccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChh------hH---H-HHHHHHHHHHHHHHHHHHHHhh
Q 007201 39 KRRTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTR-VVGQNNA------DA---A-NNVSKWTGTVYIFSLLGAFLSD 107 (613)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~-~lg~~~~------~~---~-~~~~~~~~~~~~~~~~~G~lsD 107 (613)
+..+..+|.++.+++++++..++++.+..+.+.|+.+ .++-++. +. | +....+++...+.+++--++.+
T Consensus 251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~ 330 (477)
T TIGR01301 251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR 330 (477)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999875 3444321 11 2 3333344555566677788899
Q ss_pred hccCc-hHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCC-CC-CCchhHHHHHHHHHHHHHhccccchhhhhhh
Q 007201 108 SYWGR-YKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPC-GS-HSSLHMALFYLSIYLTALGNGGYQPNIATFG 184 (613)
Q Consensus 108 r~~Gr-r~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ 184 (613)
++ |+ |++..++.++..+++....+..+.++-.. . ....+ .. ++....+..++...+.|+..+.....-.+++
T Consensus 331 ~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~-~---~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~ 405 (477)
T TIGR01301 331 GW-GAGKRLWGIVNIILAICLAATVLVTYVAKNSR-Y---YDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALA 405 (477)
T ss_pred Hh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccc-c---ccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence 95 95 66668887788877777765532111000 0 00000 00 0011135566666778899988888889999
Q ss_pred hccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccc--hhHHHHHHHHHHHHHHHHHHHcCCcc
Q 007201 185 ADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGM--WALGFWASAGSATMALILFLIGTPRY 255 (613)
Q Consensus 185 ~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g--~~~~f~~~~~~~~i~~~~~~~~~~~~ 255 (613)
++..+++. ++.|..+|+.|.+..+...+..+..|.+.+..| -...+.+.++..+++.+..+...|+.
T Consensus 406 s~~~~~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 406 SIRSSNLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRP 474 (477)
T ss_pred HHHccccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99998543 116899999999999999998887777554444 45567777777777777766665543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.4e-05 Score=84.30 Aligned_cols=172 Identities=10% Similarity=-0.016 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhCCCh------hhHHHHHHHHHHHHHHHHHHH----HHHhhhccCchHHHHHHH
Q 007201 53 VNQGLATLAFFGVGVNLVLFLTR--VVGQNN------ADAANNVSKWTGTVYIFSLLG----AFLSDSYWGRYKTCAIFQ 120 (613)
Q Consensus 53 ~~~~~~~~~~y~~~~~l~~yl~~--~lg~~~------~~~~~~~~~~~~~~~~~~~~~----G~lsDr~~Grr~~i~~~~ 120 (613)
+..+.....+|.+....+.++.. ..+.+. ...+++.++-.+...++.++. +++.||+ +..+.+.++.
T Consensus 279 ~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~ 357 (500)
T PRK09584 279 FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGM 357 (500)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHH
Confidence 33445666677777777776653 111221 114445555555555555555 6666664 7778888999
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhh
Q 007201 121 AIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKI 200 (613)
Q Consensus 121 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~ 200 (613)
++..++.+.+......++ .....+.+++++..++.++|+++..|...+++.+..|++. |+
T Consensus 358 ~l~~l~f~~l~~~~~~~~--------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg 417 (500)
T PRK09584 358 VLCSGAFLVLPLGAKFAN--------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MG 417 (500)
T ss_pred HHHHHHHHHHHHHHHhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HH
Confidence 998888888776522111 0112446678889999999999999999999999999998 99
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhcc----------ccchhHHHHHHHHHHHHHH
Q 007201 201 AFFSYFYLALNLGSLFSNTILGYFED----------EGMWALGFWASAGSATMAL 245 (613)
Q Consensus 201 ~~~~~~~~~~~iG~~~gp~l~g~l~~----------~~g~~~~f~~~~~~~~i~~ 245 (613)
+.+|.+.++..+|..++..+.+.... ..++...|...++..++..
T Consensus 418 ~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a 472 (500)
T PRK09584 418 FIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA 472 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 99999888888888777666643211 1235566665555444333
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.9e-06 Score=91.52 Aligned_cols=165 Identities=14% Similarity=0.126 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc---cCchHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSY---WGRYKTCAIFQAI 122 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grr~~i~~~~~l 122 (613)
+.+|..++..++.....|++..|+|.|+++..|++..+++.+...+.++..++.+++|+++||. +.+|..+..+..+
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL 352 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5789999999999999999999999999986779999999999999999999999999999993 1555555555444
Q ss_pred HHH-HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 123 FVI-GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 123 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
..+ +...+.... . ......+.+....+.+...++...-..+....+. + |-+
T Consensus 353 ~~~~g~~~l~~~~---~--------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~---k--~~~ 404 (495)
T KOG2533|consen 353 YAIIGAISLLAAA---V--------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT---K--ALT 404 (495)
T ss_pred HHHHHHHHHHhhc---c--------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchH---H--hHH
Confidence 433 323332221 0 1222222223333344444555555566654443 1 444
Q ss_pred HHHHHHHHHhHHHHHHH-HHHHHhccccchhHHHHHHH
Q 007201 202 FFSYFYLALNLGSLFSN-TILGYFEDEGMWALGFWASA 238 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp-~l~g~l~~~~g~~~~f~~~~ 238 (613)
..+.+..+.+.+++++| +..+.....++|...|....
T Consensus 405 ~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~ 442 (495)
T KOG2533|consen 405 TVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV 442 (495)
T ss_pred HHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence 44455555555554444 33444555567887774433
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.8e-06 Score=86.07 Aligned_cols=169 Identities=10% Similarity=-0.029 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccC--chHHHHHHHHHHHHHHHHHHhh
Q 007201 56 GLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWG--RYKTCAIFQAIFVIGLVSLSVS 133 (613)
Q Consensus 56 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G--rr~~i~~~~~l~~~~~~~~~~~ 133 (613)
-..+.+.-..-..++.++.+....+..+.|....-..+.+.++..+.|.++||+ + |...-..+.++..+......++
T Consensus 280 ~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP~~ 358 (464)
T KOG3764|consen 280 TFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIPFA 358 (464)
T ss_pred hhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhHhh
Confidence 334444444557788888888886666888888888889999999999999997 9 6444444444444444444444
Q ss_pred hcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHH
Q 007201 134 SYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLG 213 (613)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG 213 (613)
.++..+++-++.++++.+...+..........+.++..+-...|...++...+..+|
T Consensus 359 -----------------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla 415 (464)
T KOG3764|consen 359 -----------------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLA 415 (464)
T ss_pred -----------------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHh
Confidence 235557777777888888777777777777776654331112788999999999999
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q 007201 214 SLFSNTILGYFEDEGMWALGFWASAGSATMALILF 248 (613)
Q Consensus 214 ~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~ 248 (613)
.++||.++|.+.+.+|+.|...+.+...++..-++
T Consensus 416 ~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl 450 (464)
T KOG3764|consen 416 YAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVL 450 (464)
T ss_pred hhccccccchheeehhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887776666555443333
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00012 Score=73.55 Aligned_cols=144 Identities=25% Similarity=0.296 Sum_probs=106.6
Q ss_pred HHHHHHHHHHhCCCh--hhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 007201 67 VNLVLFLTRVVGQNN--ADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGC 144 (613)
Q Consensus 67 ~~l~~yl~~~lg~~~--~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 144 (613)
...+.+.. ..+.+. ...++..+.+.+...++.++.|.++||+ |||+.+..+.....++.+.+.+...
T Consensus 23 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--------- 91 (338)
T COG0477 23 PALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN--------- 91 (338)
T ss_pred HHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence 34444443 444444 4778888999999999999999999997 9998888887665555455554411
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCC-CCccccchhhhHHHHHHH-HHhHHHHHHHHHHH
Q 007201 145 GDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDE-EDPKEGHSKIAFFSYFYL-ALNLGSLFSNTILG 222 (613)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~-~~~~~~~~r~~~~~~~~~-~~~iG~~~gp~l~g 222 (613)
...+.+++.|.+.|++.+...+...++++|.+|+ +. |+...+.... ...+|..++|.+++
T Consensus 92 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T COG0477 92 ------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAG 153 (338)
T ss_pred ------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2367788888889999998999999999999987 34 8888888777 57888888887777
Q ss_pred Hhccc--cchhHHHHHHHH
Q 007201 223 YFEDE--GMWALGFWASAG 239 (613)
Q Consensus 223 ~l~~~--~g~~~~f~~~~~ 239 (613)
.+... .+|+..|.....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~ 172 (338)
T COG0477 154 LLLGALLWGWRAAFLLAAL 172 (338)
T ss_pred HHHHHHhcchHHHHHHHHH
Confidence 66543 467775554443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.9e-05 Score=84.35 Aligned_cols=146 Identities=10% Similarity=-0.001 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChh----hHHHHHHHHHHHHHHHHHHHHHHhhhccCchHH-------HHHHHHHHHHH
Q 007201 58 ATLAFFGVGVNLVLFLTRVVGQNNA----DAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKT-------CAIFQAIFVIG 126 (613)
Q Consensus 58 ~~~~~y~~~~~l~~yl~~~lg~~~~----~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~-------i~~~~~l~~~~ 126 (613)
....+......++.|+++..+.+.. ...++.+...+...+..++.|++.||+ |+|+. +.+|.++..++
T Consensus 281 f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~ 359 (489)
T PRK10207 281 FYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLG 359 (489)
T ss_pred HHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHH
Confidence 3344444446777887754333211 123444444556667888889999996 99873 67777776666
Q ss_pred HHHHHhhhc-ccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 127 LVSLSVSSY-AFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 127 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
.+.++.... ... .....+.++++...++.++|+++..+...+++.+..|++. ++.++++
T Consensus 360 ~~~~~~~~~~~~~--------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~g~ 419 (489)
T PRK10207 360 FLTAAAAGMWFAD--------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFILGM 419 (489)
T ss_pred HHHHHHHHHhhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHHHH
Confidence 554432100 000 0012346777788889999999999999999999999998 9999999
Q ss_pred HHHHHhHHHHHHHHHHHHh
Q 007201 206 FYLALNLGSLFSNTILGYF 224 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l 224 (613)
++...++|+.+|..++...
T Consensus 420 ~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 420 WFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999998877655
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.1e-05 Score=88.55 Aligned_cols=135 Identities=14% Similarity=0.200 Sum_probs=94.9
Q ss_pred ccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhh--hhhhcc-------
Q 007201 403 PASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIF--RLKYSI------- 473 (613)
Q Consensus 403 ~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~--~~~~~~------- 473 (613)
.+++.+.+.+...+..++.+.+ .+|.+|+. .+.+|.++++++.++.++.+-. +|++..
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~----~~r~~r~~---------~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~ 136 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYF----GTKLHRPI---------VIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGN 136 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHh----hcccCcce---------EEEecHHHHHHHHHHHhChHHhcCCcccccccccccc
Confidence 4566666677777777777765 56665444 6778888888888877655311 111110
Q ss_pred ------ccC-------------C-CCCCCCc-cchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHH
Q 007201 474 ------KDC-------------N-SCESKAS-TLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTS 532 (613)
Q Consensus 474 ------~~~-------------~-~~~~~~~-~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~ 532 (613)
.-| + .|++... ...+..++++-+++|+|++...+....++.+.+|++.|+.+.|+.+..
T Consensus 137 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~ 216 (633)
T TIGR00805 137 LSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESI 216 (633)
T ss_pred ccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHH
Confidence 000 0 1111010 123455667889999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhhh
Q 007201 533 ISLGNYVSSLLVTIVMKI 550 (613)
Q Consensus 533 ~~lg~~i~~~l~~~i~~~ 550 (613)
..+|..+|+++.+.+...
T Consensus 217 ~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 217 AVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred HHhhhHHHHHHHHHHHhc
Confidence 999999999998887654
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-08 Score=109.45 Aligned_cols=187 Identities=17% Similarity=0.087 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+.+...+....+..+..+....+...++.+..+.++. -.......+...++.+++.++.||+ |||++++.+.++..+
T Consensus 252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~ 328 (451)
T PF00083_consen 252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAI 328 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc
Confidence 3455555555555555444444444455556676666 2333445566677788888999996 999999999887777
Q ss_pred HHHHHH-hhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhcc-ccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 126 GLVSLS-VSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNG-GYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 126 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
+.+.++ .....++ .+...+.. .++...+.....+ +..+....+.+|.||++. |+++.
T Consensus 329 ~~~~~~~~~~~~~~--------------~~~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~ 387 (451)
T PF00083_consen 329 CSLILGIIFFLGVS--------------SSSWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGI 387 (451)
T ss_pred cccccccccccccc--------------cccccccc-cceeeeeccccccccccccccccccccccccc------ccccc
Confidence 666554 1100011 00000111 1112222222222 345666788899999999 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCccc
Q 007201 204 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYR 256 (613)
Q Consensus 204 ~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~ 256 (613)
++.+....+++.+++.+..++.+..+-...+.+.+.+.++..+..++..|+.+
T Consensus 388 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 388 GLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETK 440 (451)
T ss_pred ccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCC
Confidence 99888889999999988888776665333445555444555555555445443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0012 Score=70.41 Aligned_cols=155 Identities=16% Similarity=0.131 Sum_probs=107.0
Q ss_pred HHHHHHHHHH-hCCChhhHH-HHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 007201 67 VNLVLFLTRV-VGQNNADAA-NNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGC 144 (613)
Q Consensus 67 ~~l~~yl~~~-lg~~~~~~~-~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 144 (613)
+++..|+++. .|++..|.. -+.-..+=.+....++...+.|.. |.|++++++.+..++...++.+..
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~---------- 92 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT---------- 92 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC----------
Confidence 5677888876 899998865 445555666777888889999995 999999999888777777766652
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHh
Q 007201 145 GDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYF 224 (613)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l 224 (613)
+...+.+.-+..|++.+. ..+..+++=...|+++ --++.++...+.-+|-.++..++-.+
T Consensus 93 -------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQll 152 (412)
T PF01770_consen 93 -------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLL 152 (412)
T ss_pred -------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 255566666776666553 4444555544455544 56777777777777777777666655
Q ss_pred cc--ccchhHHHHHHHHHHHHHHHHHHHcC
Q 007201 225 ED--EGMWALGFWASAGSATMALILFLIGT 252 (613)
Q Consensus 225 ~~--~~g~~~~f~~~~~~~~i~~~~~~~~~ 252 (613)
.. ..++....+++.....+++++.++..
T Consensus 153 vs~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 153 VSFGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 54 33566677777776666766666543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.9e-05 Score=78.73 Aligned_cols=166 Identities=16% Similarity=0.106 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc---cCchHHHHHH-HH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSY---WGRYKTCAIF-QA 121 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grr~~i~~~-~~ 121 (613)
+.++.+..+.+...+.+-.=.++++.|++ .+|.+-+-.+.+-.+.-+.+.+.+|+.|..+||. |||||-+++. .+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 56677777777777777777788999986 7899888888777777888999999999999983 5887765554 55
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
+..++.+++..+..+-..+ | |.-.++ ........++++..++=+..-.....+-++++|..-..+ +-+
T Consensus 111 ~i~~~l~Lig~aaDig~~l---g-d~~~~~--~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~------~~~ 178 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLL---G-DNERKP--VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA------KKT 178 (498)
T ss_pred HHHHHHhhhhhHhhhhHHh---c-CCcccc--cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh------hhh
Confidence 6667777777764333211 1 111111 112234456666666667777788888999999987655 223
Q ss_pred -HHHHHHHHHhHHHHHHHHHHHHh
Q 007201 202 -FFSYFYLALNLGSLFSNTILGYF 224 (613)
Q Consensus 202 -~~~~~~~~~~iG~~~gp~l~g~l 224 (613)
+.+++.....+|+.+|..++++.
T Consensus 179 ~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 179 RANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred ccchhHHHHHHhcceeeeeccccc
Confidence 88899999999999998777754
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=59.74 Aligned_cols=69 Identities=16% Similarity=0.064 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007201 52 LVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAI 122 (613)
Q Consensus 52 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l 122 (613)
-...++...+...+.++++.|++ +.|+++.+.|.+.++..+...+++++.|+++||+ |++|.+..+..+
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~ 74 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence 34455556666677889999987 5999999999999999999999999999999996 998888776544
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.2e-05 Score=81.90 Aligned_cols=166 Identities=12% Similarity=-0.021 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhh
Q 007201 55 QGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSS 134 (613)
Q Consensus 55 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~ 134 (613)
.++..+..-.+++++--++ ++++..+.-.|........+-++.-++.++|-.++ |+-+++.++++.+.+=++.++..
T Consensus 380 av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L- 456 (618)
T KOG3762|consen 380 AVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYL- 456 (618)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHh-
Confidence 3333344434445554444 56776666667555555666777888899999996 99999999998888777777776
Q ss_pred cccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHH-HHHhHH
Q 007201 135 YAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFY-LALNLG 213 (613)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~-~~~~iG 213 (613)
.++|+.+..-+++|+..+..+.++.++++...|++- |.++-++.. .--.+|
T Consensus 457 ----------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG 508 (618)
T KOG3762|consen 457 ----------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLG 508 (618)
T ss_pred ----------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccC
Confidence 348888899999999999999999999999999998 888888844 445889
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHc
Q 007201 214 SLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 214 ~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
-.+|.+++|.+...+|-+..|.+.++..++.++.....
T Consensus 509 ~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 509 KGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred cchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998998888888887766666655444
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.017 Score=63.44 Aligned_cols=168 Identities=15% Similarity=0.055 Sum_probs=94.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh-----hhHHHHHHHHHHH-HHHHHHHHHHHhhhccCchHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNN-----ADAANNVSKWTGT-VYIFSLLGAFLSDSYWGRYKTCAI 118 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~-----~~~~~~~~~~~~~-~~~~~~~~G~lsDr~~Grr~~i~~ 118 (613)
+|.++...+..|+..+.|+.+. -+++.+..+. ....++-....+. ..+..++-+++++|+ +|++++.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence 3566666666666656655443 3455555532 3344444433333 444478899999996 99999988
Q ss_pred HHHHHHHHHHHHHhhhcccc--cC-C-CCCCCC--CCCCCCCCc---hhHHHHHHHHHHHHHhccccch-hhhhhhhccC
Q 007201 119 FQAIFVIGLVSLSVSSYAFL--LK-P-SGCGDE--GNPCGSHSS---LHMALFYLSIYLTALGNGGYQP-NIATFGADQF 188 (613)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~~~--~~-~-~~~~~~--~~~~~~~~~---~~~~~~~~~~~l~g~g~g~~~~-~~~~~~~~~~ 188 (613)
....+.....++++.-. |. .+ | ..|++- ..|..-... .+.|...+.-+...+-.....+ ..++++.|.+
T Consensus 80 ~~~~F~~~f~lF~~vl~-p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~ 158 (472)
T TIGR00769 80 VISPFLGFFALFAFVIY-PLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQIT 158 (472)
T ss_pred HHHHHHHHHHHHHHHHh-cchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77766665555554411 21 00 0 000000 000000000 0011111111112222222333 6789999999
Q ss_pred CCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhc
Q 007201 189 DEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFE 225 (613)
Q Consensus 189 p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~ 225 (613)
+.+| -.|.++++..+.|+|..+++.+..++.
T Consensus 159 t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 159 TIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred CHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888 679999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.9e-05 Score=78.91 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=88.9
Q ss_pred cccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCC
Q 007201 404 ASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKA 483 (613)
Q Consensus 404 ~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (613)
+.+.+...+.-.+..|+++.+ .+|+|||+ .+.+|.+..++++.+.+...
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~----SD~yGRkp---------vll~c~~~va~s~ll~~~S~------------------ 119 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCL----SDRYGRKP---------VLLACLIGVALSYLLWALSR------------------ 119 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhh----hhhhCchH---------HHHHHHHHHHHHHHHHHHHH------------------
Confidence 344444556667777887776 77899988 77888888888777776542
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 007201 484 STLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMK 549 (613)
Q Consensus 484 ~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~ 549 (613)
++..++.+-++.|+..+..++.. ++++|+++++.|+.+|+......++|.++||++.+.+..
T Consensus 120 ---~F~afv~aR~l~Gi~kgnl~v~r-AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 120 ---NFAAFVLARFLGGIFKGNLSVIR-AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ---HHHHHHHHHHhhhhccCchHHHH-HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 33455666788999999888866 999999999999999999999999999999999987765
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.038 Score=59.97 Aligned_cols=189 Identities=14% Similarity=-0.024 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|..+.+.+..++.++.--++..-.++|+.+-+.-+.--.+..-..-.+..+++.+.-|...||. -|.|++..+.+..-+
T Consensus 2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~ 80 (432)
T PF06963_consen 2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNL 80 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHH
Confidence 4456777888888888888888889999876655555555555666777888889999999996 999988887664422
Q ss_pred HH----HHHHhhhcccccCCCCCCCCCCCCCC-CCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhh
Q 007201 126 GL----VSLSVSSYAFLLKPSGCGDEGNPCGS-HSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKI 200 (613)
Q Consensus 126 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~ 200 (613)
.. .++......+. ... +......++.+..++.++..=.......++=-|+.+.-..++...+.
T Consensus 81 sv~~s~~~~~~l~~~~~------------~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La 148 (432)
T PF06963_consen 81 SVAASCALFLLLLSYPS------------SSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALA 148 (432)
T ss_pred HHHHHHHHHHHHHhCCc------------cccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHH
Confidence 21 22211111011 000 01111222222222222221112222233334554322111111144
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 007201 201 AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALIL 247 (613)
Q Consensus 201 ~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~ 247 (613)
+..+...-.=-+.-.+||++.|.+....+......+.+...++....
T Consensus 149 ~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 149 RMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 55555444446678899999999988778776666666555555444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00031 Score=78.50 Aligned_cols=153 Identities=18% Similarity=0.015 Sum_probs=91.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007201 43 GTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAI 122 (613)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l 122 (613)
..+|..++.+....+.+++.+-...+....+-+..|.+... .....+..+...++..++.++.||+ |||+.++.+...
T Consensus 291 ~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~ 368 (513)
T KOG0254|consen 291 KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG 368 (513)
T ss_pred chHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence 34566666666666666655444444334444566666443 4555566777788888889999996 999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHH-HHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYL-TALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
+.++.++++........ .+. ..... .++.++...+ ...-..+..+..+.+.+|.||.+. |++
T Consensus 369 m~~~~~~~~~~~~~~~~---------~~~-~~~~~-~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~ 431 (513)
T KOG0254|consen 369 MSICLVILAVVGVFALY---------YPN-SSKGA-GWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSK 431 (513)
T ss_pred HHHHHHHHHHHHHHhcc---------CCC-cccch-hHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------Hhh
Confidence 99888877765221110 000 00011 1222222222 222223344566678899999998 888
Q ss_pred HHHHHHHHHhHHH
Q 007201 202 FFSYFYLALNLGS 214 (613)
Q Consensus 202 ~~~~~~~~~~iG~ 214 (613)
+.++......+..
T Consensus 432 ~~s~~~~~n~~~~ 444 (513)
T KOG0254|consen 432 GASLAVAVNWLWN 444 (513)
T ss_pred hHHHHHHHHHHHH
Confidence 8887444443333
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0019 Score=64.03 Aligned_cols=93 Identities=13% Similarity=0.220 Sum_probs=66.4
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCC
Q 007201 71 LFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNP 150 (613)
Q Consensus 71 ~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (613)
.|+.+.+|+...+.+.....-....+++..+.|-|+|+- |||+..+..++.. .++.+.-..|.
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitY----iLsCiTKhSpq------------ 123 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITY----ILSCITKHSPQ------------ 123 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHH----HHHHHhhcCCc------------
Confidence 466677888888888777666777788888999999995 9999877655443 33333322232
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccchhhhhh-hhccC
Q 007201 151 CGSHSSLHMALFYLSIYLTALGNGGYQPNIATF-GADQF 188 (613)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~~~~~ 188 (613)
+-.+.++|++.|+..+...++.-+. ++|.-
T Consensus 124 --------YkVLmVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 124 --------YKVLMVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred --------eEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 5568899999999988877766543 44543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.83 E-value=4e-05 Score=84.67 Aligned_cols=136 Identities=7% Similarity=-0.132 Sum_probs=105.5
Q ss_pred HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCC
Q 007201 74 TRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGS 153 (613)
Q Consensus 74 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (613)
++.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++..++.+.......-.++.
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~------------- 345 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLA------------- 345 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccc-------------
Confidence 457899999999999999999999999999999995 999999999888877765543221000000
Q ss_pred CCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccc
Q 007201 154 HSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGM 229 (613)
Q Consensus 154 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g 229 (613)
..-...+......++.+++.+........++.+..|++. +++.++++....++|..+++.+++++.+..|
T Consensus 346 ~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 346 FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 000012234444567778888888888999999999998 9999999999999999999999999988776
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00035 Score=78.57 Aligned_cols=125 Identities=10% Similarity=0.082 Sum_probs=87.5
Q ss_pred HhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhh
Q 007201 427 PLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMY 506 (613)
Q Consensus 427 ~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~ 506 (613)
++.+|+++|+ .+.+|.++.+++.++.++.... ....+.+.+.+..++.|+|++..+
T Consensus 83 ~L~Dr~G~R~---------vllig~ll~~iG~ll~ala~~~---------------~i~~s~~~l~l~r~l~G~G~~~~~ 138 (591)
T PTZ00207 83 FIYDYLGPRP---------IFVLSMTVFCLGTLLFALTFQE---------------VIEGSVVRLSVYNGLMTLGCMLFD 138 (591)
T ss_pred HHHHHhCcHH---------HHHHHHHHHHHHHHHHHHHhcc---------------cccCcHHHHHHHHHHHHHHHHHHH
Confidence 3366765544 7888999999998888765211 112356667778889999999888
Q ss_pred hhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 007201 507 VGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYII 586 (613)
Q Consensus 507 p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~ 586 (613)
+.....+.+.+| +.||.++|+......+|+.+.+.+...+.. .+...+|++++++.++..++.+.
T Consensus 139 ~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--------------~~~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 139 LGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--------------DNTSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888887 679999999999999999764444443322 01345677777777776666665
Q ss_pred hhhh
Q 007201 587 CARW 590 (613)
Q Consensus 587 ~~~~ 590 (613)
+.+.
T Consensus 204 ~vr~ 207 (591)
T PTZ00207 204 FMRL 207 (591)
T ss_pred heeC
Confidence 5543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=9.1e-05 Score=78.69 Aligned_cols=182 Identities=13% Similarity=0.036 Sum_probs=122.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHH--------HHHHHHHHHHH-HHHHHHHHhhhccCchH
Q 007201 44 TWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAAN--------NVSKWTGTVYI-FSLLGAFLSDSYWGRYK 114 (613)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~--------~~~~~~~~~~~-~~~~~G~lsDr~~Grr~ 114 (613)
|-+.++..+...|+--.++|+...+...-++ ..|+.+..... ...+...++.+ +..++.++.|++ |||+
T Consensus 302 hg~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~ 379 (538)
T KOG0252|consen 302 HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKY 379 (538)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHH
Confidence 4466666777777777888887766655554 34554433222 22223333333 666778889995 9999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCcc
Q 007201 115 TCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPK 194 (613)
Q Consensus 115 ~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~ 194 (613)
..+-+.+++.+..+.++.. .+ .. -.....++..-+.+-++.-+..+..-.+-+|.||++.
T Consensus 380 iq~~GF~~~~i~~~~~~~~---y~--------------~~-~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv-- 439 (538)
T KOG0252|consen 380 IQLMGFFIMTIFFFVIAGP---YN--------------QL-ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV-- 439 (538)
T ss_pred HHHhhHHHHHHHHHHHcCC---cc--------------cc-cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH--
Confidence 9999998888777666654 11 00 0111212222222334555556666677799999999
Q ss_pred ccchhhhHHHHHHHHHhHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHHHHHHHHc
Q 007201 195 EGHSKIAFFSYFYLALNLGSLFSNTILGYFED-----EGMWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 195 ~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~-----~~g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
|+++.++.-.+.-+|+++|.....++.+ ..+.+..|++.+.+..++.+.-++.
T Consensus 440 ----R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 440 ----RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred ----hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 9999999999999999999999999988 6788888988887777766655443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00023 Score=78.54 Aligned_cols=133 Identities=11% Similarity=0.037 Sum_probs=85.7
Q ss_pred cchhHHHHHHHHhhhhhHHHhhhhh-ccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccc
Q 007201 408 SFDILSVAAFIFIYRRVLDPLVERL-TRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTL 486 (613)
Q Consensus 408 ~~~~v~~~~~~~l~~~l~~~l~~r~-~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (613)
........+..++.+++ .||+ |||+ .+.+|.++.+++.++++... .
T Consensus 52 ~~~~~~~~l~~ligG~L----aDRilGrrr---------~iliG~il~~lg~lll~~~~-------------------~- 98 (493)
T PRK15462 52 SAYCSLVYVTPILGGFL----ADKVLGNRM---------AVMLGALLMAIGHVVLGASE-------------------I- 98 (493)
T ss_pred HHHHHHHHHHHHHHHHH----HHHccCcHH---------HHHHHHHHHHHHHHHHHHhh-------------------c-
Confidence 33344445555566666 5565 5443 56778888877766554211 0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCch--hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcc
Q 007201 487 SIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDG--LKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKG 564 (613)
Q Consensus 487 s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~--~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~ 564 (613)
+.........+..++.++..+...+++.+.+|++ .|.++.++.....++|+.++|.+.+.+.+. .
T Consensus 99 ~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~-------------~ 165 (493)
T PRK15462 99 HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE-------------Y 165 (493)
T ss_pred chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh-------------h
Confidence 1112333444555666777777778999999875 799999999998999999999999876532 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 007201 565 HLDRFYFLLAALTTADLFIYII 586 (613)
Q Consensus 565 ~~~~~f~~~a~~~~~~~~~~~~ 586 (613)
+++..|.+.++.++++++.++.
T Consensus 166 Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 166 SWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 3466777766655555555544
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.022 Score=59.50 Aligned_cols=159 Identities=18% Similarity=0.165 Sum_probs=85.4
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhh-----hccCchHH
Q 007201 41 RTGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSD-----SYWGRYKT 115 (613)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD-----r~~Grr~~ 115 (613)
.++..++++.+.+....+.... +....+|..++ .-|.|-++.+.....+ -=+-.-++...+.| |+ ||||.
T Consensus 26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP~lL~-ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIPLLLQ-AKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCch-hHhhhhHHHhc-CCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence 3445577888888888877775 56566776665 5677766655443222 12233456677777 85 99997
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccc
Q 007201 116 CAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKE 195 (613)
Q Consensus 116 i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~ 195 (613)
-+.-+- ..+|.++..++...+..+ +++++.|.- ..+-...+++-++.+.--.+.-...-.+..+++
T Consensus 101 Wvvp~q-~llG~~mllLs~~v~~~~---g~ng~~p~v-------~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~--- 166 (510)
T KOG3574|consen 101 WVVPCQ-YLLGLFMLLLSYLVDRGL---GGNGGLPNV-------VALTLLFLLLNFLAATQDIAVDGWALTMLSREN--- 166 (510)
T ss_pred eeeehH-HHHHHHHHHHhhCCCccc---ccCCCCcch-------HHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh---
Confidence 654432 233444444442112111 123333221 112122233444444444445555555555555
Q ss_pred cchhhhHHHHHHHHHhHHHHHHHHHH
Q 007201 196 GHSKIAFFSYFYLALNLGSLFSNTIL 221 (613)
Q Consensus 196 ~~~r~~~~~~~~~~~~iG~~~gp~l~ 221 (613)
.|-+......+.+.|..+|..+.
T Consensus 167 ---lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 167 ---LGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred ---cCchhHHHHHHHhhhHHhhccee
Confidence 56666667777788887776543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.12 Score=55.37 Aligned_cols=60 Identities=22% Similarity=0.155 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007201 487 SIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTI 546 (613)
Q Consensus 487 s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~ 546 (613)
+.|.++...+..|+-.+..+......+.+..|++.|..++|+....-.+|..+++++.-.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455555667778888899998888889999999999999999999999999888776543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0073 Score=67.87 Aligned_cols=152 Identities=12% Similarity=-0.009 Sum_probs=104.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh---hHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHH-HH
Q 007201 43 GTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNA---DAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTC-AI 118 (613)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~---~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i-~~ 118 (613)
+++|.+...+++.+.....+|++..+.|......++-|.. +.++......++..++.++.|.+.-++ +|-|-. +.
T Consensus 307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~ 385 (599)
T PF06609_consen 307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIF 385 (599)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHH
Confidence 3457777777888888888999888888887777766653 567777778888888889999999885 876655 45
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccch
Q 007201 119 FQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHS 198 (613)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~ 198 (613)
+..++.++.-+++... |. +.+ ..+...++.|+|.|...........-..|++.
T Consensus 386 ~~~~~ta~~Gama~~~--~~-----------------n~~--~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~------ 438 (599)
T PF06609_consen 386 GSVLMTAFCGAMAAVR--PD-----------------NKN--AAIAFLVLAGFGIGGILVPAIVIAQLIVPDED------ 438 (599)
T ss_pred HHHHHHHHHHHHHHcc--CC-----------------Ccc--hHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH------
Confidence 5555554444444331 21 122 23445567777777766656555555567666
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHH
Q 007201 199 KIAFFSYFYLALNLGSLFSNTILG 222 (613)
Q Consensus 199 r~~~~~~~~~~~~iG~~~gp~l~g 222 (613)
.+.+.++......+|+.+|..+..
T Consensus 439 ig~a~gL~~s~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 439 IGTATGLTGSIRSIGGSIGYAIYN 462 (599)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 889999888888888888876653
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0047 Score=67.15 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=80.0
Q ss_pred HHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHH
Q 007201 412 LSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQ 491 (613)
Q Consensus 412 v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 491 (613)
.+-.+.....+.+ .+|++-|+ .+.++++..++..+++++.. ++..+
T Consensus 73 ysYal~qIp~GlL----aDrlG~K~---------vL~l~~l~Wsl~t~L~~fa~---------------------Sl~~L 118 (511)
T TIGR00806 73 YSHLAVLVPVFLL----TDYLRYKP---------VLVLQALSFVCVWLLLLLGT---------------------SVWHM 118 (511)
T ss_pred HHHHHHHHHHHHH----HHHhCchH---------HHHHHHHHHHHHHHHHHHHH---------------------HHHHH
Confidence 3344444455544 55655443 67777777777777776642 56678
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007201 492 IPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIV 547 (613)
Q Consensus 492 i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i 547 (613)
.+.-++.|++|+... ....++++.+|++.|++++|+++....+|..+++.+.+.+
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999 8899999999999999999999999999999999998873
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0095 Score=55.31 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHH
Q 007201 81 NADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMA 160 (613)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (613)
+..-..-.++......+..+++..+.+++ |.|++++++.+...+....... | +.+
T Consensus 36 ~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~----~--------------------~~~ 90 (156)
T PF05978_consen 36 AGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY----P--------------------NSY 90 (156)
T ss_pred ccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh----h--------------------hHH
Confidence 33334445666777788888888999995 9999999998877755444322 2 267
Q ss_pred HHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHH
Q 007201 161 LFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTIL 221 (613)
Q Consensus 161 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~ 221 (613)
.++.+-++.|++.+..+.+...++.+..+++. |++..+++-...+.+..+|.++.
T Consensus 91 ~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 91 TLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999887766 77877776666666666665543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0093 Score=65.08 Aligned_cols=158 Identities=13% Similarity=0.072 Sum_probs=102.1
Q ss_pred ccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCc
Q 007201 405 SMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKAS 484 (613)
Q Consensus 405 ~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (613)
++.+...++..+..|.++.. -.|.+ +..+=+.+|.+++.++.+++...+.. .+
T Consensus 75 ~viaa~slg~~i~~liF~~W----s~k~~--------~~k~Pli~s~ii~~~g~llY~~l~~~---------------~~ 127 (488)
T KOG2325|consen 75 LVIAASSLGHAIFSLIFGIW----SNKTG--------SVKKPLIVSFLIAIIGNLLYLALAYV---------------PN 127 (488)
T ss_pred HHHHHHHHHHHhcchhhccc----ccccC--------CcccCHHHHHHHHHHHHHHHHHHHhc---------------cc
Confidence 34444667777777777754 22322 11223678888888998888666532 22
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-CCCCC-CCCC
Q 007201 485 TLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTR-PGWIP-GNLN 562 (613)
Q Consensus 485 ~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~-~~~~~-~~~~ 562 (613)
. +.+++..+.++.|+|.+-...-- .++++..-.+.|.++++..+....+|..+||.+...+...... --+++ .++|
T Consensus 128 ~-~~y~mL~~R~l~Gvg~~n~a~lR-~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n 205 (488)
T KOG2325|consen 128 G-VKYLMLVARILTGVGVGNFAVLR-AYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFN 205 (488)
T ss_pred c-hHHHHHHHHHHcCcCcccHHHHH-HHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEE
Confidence 2 66788899999999976555544 6777766667777888888877788888888887766655432 11222 2333
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 007201 563 KGHLDRFYFLLAALTTADLFIYIICARWYKY 593 (613)
Q Consensus 563 ~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~ 593 (613)
. |...-|+.+++.++..++..+..+|-.+
T Consensus 206 ~--YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 206 M--YTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred e--cchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 2 3344566777777777777777776443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.002 Score=70.56 Aligned_cols=150 Identities=19% Similarity=0.164 Sum_probs=115.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHH-HHhhhccCchHHHHHHHH
Q 007201 44 TWIAGILILVNQGLATLAFFGVGV-NLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGA-FLSDSYWGRYKTCAIFQA 121 (613)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~y~~~~-~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G-~lsDr~~Grr~~i~~~~~ 121 (613)
+.|..+.++...++....-.+-.. .++.|+...++++..+.+...+..+....+++++.. .+.-. +|-|+++.+|++
T Consensus 238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~ 316 (463)
T KOG2816|consen 238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLL 316 (463)
T ss_pred CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHH
Confidence 335555555554444333322112 346778888999999999999999999999998887 66666 599999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
...+..+.++++. +.|+.+...++.++ .+...++..++++.+..+++ +|+
T Consensus 317 ~~~~~~~~~af~~-----------------------~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e------~g~ 366 (463)
T KOG2816|consen 317 SEFLQLLLFAFAT-----------------------ETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEE------QGK 366 (463)
T ss_pred HHHHHHHHHHHhc-----------------------cchhhhHHHHHHHh-hcchhHHHHhHHHhhccccc------ccc
Confidence 9999999999882 35666666665544 46788999999999999998 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHh
Q 007201 202 FFSYFYLALNLGSLFSNTILGYF 224 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l 224 (613)
.+++......+.++++|.+-+.+
T Consensus 367 v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 367 VFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred hhhHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999887755
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.004 Score=69.68 Aligned_cols=127 Identities=14% Similarity=0.173 Sum_probs=91.9
Q ss_pred hHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHH
Q 007201 411 ILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFW 490 (613)
Q Consensus 411 ~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 490 (613)
.++.+++..+.+ ++.+|+|||+ .+.+++++..++-+..++. .+++.
T Consensus 128 ~~G~~vG~~i~g----~lsD~~GRk~---------~~~~~~~~~~i~~~~~a~a---------------------~~~~~ 173 (521)
T KOG0255|consen 128 FLGVLVGSLIFG----PLSDRFGRKP---------VLLVSLLLFIIFGILTAFA---------------------PNYWM 173 (521)
T ss_pred HHHHHHHHhhhe----ehHhhcccHH---------HHHHHHHHHHHHHHHHHHh---------------------CcHHH
Confidence 334444444444 4577788877 6666666666666555544 25667
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHH
Q 007201 491 QIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFY 570 (613)
Q Consensus 491 ~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f 570 (613)
.++.-++.|++........+.++.|..+++.|+.++.+ ....+.++.+++...+.+.+ +| .+.+
T Consensus 174 ~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~W----------r~~~ 237 (521)
T KOG0255|consen 174 FLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DW----------RWLF 237 (521)
T ss_pred HHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hH----------HHHH
Confidence 78888999999999999999999999999999999999 88888888888888777664 34 5667
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 007201 571 FLLAALTTADLFIYIICA 588 (613)
Q Consensus 571 ~~~a~~~~~~~~~~~~~~ 588 (613)
++..+.+++.+++ +++.
T Consensus 238 ~~~~~~~~~~~~~-~~l~ 254 (521)
T KOG0255|consen 238 WIISIPSGLFLLL-WFLP 254 (521)
T ss_pred HHHHHHHHHHHHH-HHcc
Confidence 7777776666555 4443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.1 Score=59.88 Aligned_cols=319 Identities=10% Similarity=-0.023 Sum_probs=190.1
Q ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCc
Q 007201 77 VGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSS 156 (613)
Q Consensus 77 lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (613)
.+...........++.....+..+.....+|-.-|+-..+.......+++.+.+.+.+. +. .+..
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a--------------~~~~ 79 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GA--------------IPSS 79 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-cc--------------Cccc
Confidence 34444556677788888888999999999999766667777666666677676666521 11 1111
Q ss_pred hhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccc-hhH---
Q 007201 157 LHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGM-WAL--- 232 (613)
Q Consensus 157 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g-~~~--- 232 (613)
.......+..+.+.++.++..+.-+.+-+++....+ .+.+.+..+++++..+.+.+. .+++..+..... +..
T Consensus 80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg 155 (654)
T TIGR00926 80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFG 155 (654)
T ss_pred ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccc
Confidence 112334556666788888999999999999987654 355557888999988887764 455555543322 211
Q ss_pred ---HHH-HHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccCCcccchhhhcccccccccCCccc
Q 007201 233 ---GFW-ASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARN 308 (613)
Q Consensus 233 ---~f~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (613)
.+. ..++..++.++.+......++..++.+.....+.++........+
T Consensus 156 ~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~---------------------------- 207 (654)
T TIGR00926 156 CQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR---------------------------- 207 (654)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH----------------------------
Confidence 122 233344444444555444444444433222222222111111000
Q ss_pred ccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCcccc--chhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceee
Q 007201 309 ILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLC--TVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFV 386 (613)
Q Consensus 309 ~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (613)
.+. ... +......|-.. .....++.+...+++.++...+.+++.+.+......
T Consensus 208 ----------~~~----~~~-----------~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s 262 (654)
T TIGR00926 208 ----------KRF----STR-----------SEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGS 262 (654)
T ss_pred ----------Hhh----ccC-----------CcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 000 000 00000122211 111223567787888888888888887776554444
Q ss_pred eehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 007201 387 EQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEI 466 (613)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~ 466 (613)
.+...++...+.++...-....++.+-.+...++...+.+++.+++.++. .....+.-+.+.+.++.+.+.+...
T Consensus 263 ~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~-----~~ls~l~k~~iG~~la~la~~va~~ 337 (654)
T TIGR00926 263 RWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCG-----TRFTSLRKMAVGGLLAALSFFVAAL 337 (654)
T ss_pred HHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcC-----CCCChHHHHHHHHHHHHHHHHHHHH
Confidence 44444444322222223345567788888888888887789999997766 7788899999999999999998887
Q ss_pred hhhhhc
Q 007201 467 FRLKYS 472 (613)
Q Consensus 467 ~~~~~~ 472 (613)
......
T Consensus 338 ve~~~~ 343 (654)
T TIGR00926 338 VQLKVN 343 (654)
T ss_pred HHHHHh
Confidence 776666
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.00032 Score=78.50 Aligned_cols=135 Identities=14% Similarity=0.227 Sum_probs=3.0
Q ss_pred ccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhh--hhhhcccc-----
Q 007201 403 PASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIF--RLKYSIKD----- 475 (613)
Q Consensus 403 ~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~--~~~~~~~~----- 475 (613)
.+.+...+-+..++...+...+ .+| ++| .+.+++|.++++++.++...-+-. .|.+.+..
T Consensus 40 ~G~i~s~~di~~~~~~~~vsy~----g~~-~hr--------prwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~ 106 (539)
T PF03137_consen 40 SGLISSSYDIGSLVVVLFVSYF----GGR-GHR--------PRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGN 106 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hhh-cCC--------cceeeecHHHHHHHHHHHhccHhhcCCCccccccccccc
Confidence 3455555555555555555543 233 333 467899999999998877644211 11111100
Q ss_pred -------C------------CCC---CCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHH
Q 007201 476 -------C------------NSC---ESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSI 533 (613)
Q Consensus 476 -------~------------~~~---~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~ 533 (613)
| +++ ++.......+.++++.++.|+|....++...+|+.|.++++..+.+.|+.+.+.
T Consensus 107 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~ 186 (539)
T PF03137_consen 107 SSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMS 186 (539)
T ss_dssp ---------------------------------------------SSS--------------------------------
T ss_pred cccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHh
Confidence 1 001 111223344677789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhh
Q 007201 534 SLGNYVSSLLVTIVMKI 550 (613)
Q Consensus 534 ~lg~~i~~~l~~~i~~~ 550 (613)
.+|..+|-++.+.+.+.
T Consensus 187 ~lGPa~Gf~lg~~~L~~ 203 (539)
T PF03137_consen 187 ILGPALGFLLGSFCLRI 203 (539)
T ss_dssp -----------------
T ss_pred hccHHHHHHHHHHHHhc
Confidence 99999998887766654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=66.55 Aligned_cols=148 Identities=12% Similarity=0.218 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--hhhhcccc-----------------------C----CCCC--CCCccchhHHHHH
Q 007201 445 QRMGVGLVIAIMAMISAGVVEIF--RLKYSIKD-----------------------C----NSCE--SKASTLSIFWQIP 493 (613)
Q Consensus 445 ~~~~~G~~l~~~~~~~~~~~~~~--~~~~~~~~-----------------------~----~~~~--~~~~~~s~~~~i~ 493 (613)
+.+++|.++++++.++..+-+.. .|.+.... + ++|+ .......+..++.
T Consensus 163 r~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~ 242 (735)
T KOG3626|consen 163 RWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFL 242 (735)
T ss_pred ceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHH
Confidence 57789999999998888754211 11111000 0 1121 1122224456778
Q ss_pred HHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCc--ch---hHH
Q 007201 494 QYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNK--GH---LDR 568 (613)
Q Consensus 494 ~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~--~~---~~~ 568 (613)
+.++.|+|+...+|...+|+.+-+.++.-..+.|+.+.+..+|..+|-++.+...+...|.|--+.+++. .. .-|
T Consensus 243 ~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWW 322 (735)
T KOG3626|consen 243 GQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWW 322 (735)
T ss_pred HHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHH
Confidence 9999999999999999999999999999999999999999999999988888777654432211122221 11 112
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhhcc
Q 007201 569 -FYFLLAALTTADLFIYIICARWYK 592 (613)
Q Consensus 569 -~f~~~a~~~~~~~~~~~~~~~~~~ 592 (613)
-|++.+++.++.++.++++-++.+
T Consensus 323 lGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 323 LGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCc
Confidence 255667777777777776655544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=62.49 Aligned_cols=183 Identities=15% Similarity=0.084 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHH-HHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTC-AIFQAIFV 124 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i-~~~~~l~~ 124 (613)
+.++++.++.......+|+..+.+-.-+ ...|.+...+|.+.....++++++..+.|.+.||. ...|.. +.......
T Consensus 266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~ 343 (480)
T KOG2563|consen 266 RQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFAL 343 (480)
T ss_pred ccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHH
Confidence 5666777776667666766665444333 24577878899999999999999999999999996 655543 33333334
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
++...+...+..+ ...+.++....++|....+..|.-.-+..|..=+.. -++..|
T Consensus 344 v~~~~l~~~t~~~-------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~------E~tSsG 398 (480)
T KOG2563|consen 344 VGTLMLLTCTLFL-------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA------EGTSSG 398 (480)
T ss_pred HHHHHHHHhhccC-------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC------Ccccce
Confidence 4432222221111 123344555556666666777877777777653333 124445
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccc----hhHHHHHHHHHHHHHHHHHHHcCCcc
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGM----WALGFWASAGSATMALILFLIGTPRY 255 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g----~~~~f~~~~~~~~i~~~~~~~~~~~~ 255 (613)
+.+...++-+.+-..+-+...+..+ +...-+.......+..++..+.++++
T Consensus 399 ll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y 453 (480)
T KOG2563|consen 399 LLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDY 453 (480)
T ss_pred eEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhH
Confidence 5555555555555555566655554 33333333344444555555555544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.047 Score=54.81 Aligned_cols=90 Identities=11% Similarity=0.053 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhH
Q 007201 443 ELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLK 522 (613)
Q Consensus 443 ~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~r 522 (613)
+...+.+|.++..+|+..+......+ ....+.|.+....++.+.+....+.....-..+.+|. .|
T Consensus 65 p~~~l~iG~~~~~~GY~~~~l~~~~~--------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~R 129 (250)
T PF06813_consen 65 PWVVLLIGAVLGFVGYGLLWLAVSGR--------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SR 129 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCc--------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-cc
Confidence 55577889999989987776554221 2234556666666677788777777776777788985 79
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 007201 523 SFGSALCMTSISLGNYVSSLLVTIV 547 (613)
Q Consensus 523 g~~~g~~~~~~~lg~~i~~~l~~~i 547 (613)
|++.|+.-...++++.+-..+...+
T Consensus 130 G~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 130 GTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred CceehhhhHHHHhHHHHHHHHHHHH
Confidence 9999999999898886666655443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.05 Score=44.82 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=57.2
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 007201 69 LVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVS 133 (613)
Q Consensus 69 l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~ 133 (613)
+.+.++++.++|.++++++.+...+++.++.+...++.++. .+++.+..+.++..+.++.+++.
T Consensus 14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999999999995 88899999988888888888876
|
Note that many members are hypothetical proteins. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.42 Score=53.49 Aligned_cols=170 Identities=12% Similarity=0.007 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH-HHHHHHH-HHHHHHH
Q 007201 54 NQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCA-IFQAIFV-IGLVSLS 131 (613)
Q Consensus 54 ~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~-~~~~l~~-~~~~~~~ 131 (613)
..++..++..+.-....-.+...+|-+....+.+++++.++..++..++|+++++. -|+.... +...+.. +..+++.
T Consensus 22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll~ 100 (521)
T PRK03612 22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALILY 100 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555666788888889999999999999999888887542 2222111 1111111 1111111
Q ss_pred hhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHh
Q 007201 132 VSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALN 211 (613)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~ 211 (613)
....... .....++...++.++..|+..|...-+..+... ++ -++..|-.|....
T Consensus 101 ~~~~~~~------------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~nt 155 (521)
T PRK03612 101 AAFAFQG------------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADY 155 (521)
T ss_pred HHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHh
Confidence 1100000 011122233334456666666655555443221 11 2355667778888
Q ss_pred HHHHHHHHHHHHhc-cccchhHHHHHHH-HHHHHHHHHHH
Q 007201 212 LGSLFSNTILGYFE-DEGMWALGFWASA-GSATMALILFL 249 (613)
Q Consensus 212 iG~~~gp~l~g~l~-~~~g~~~~f~~~~-~~~~i~~~~~~ 249 (613)
+|+++|.++.+++. ...|-....++.+ +..+++++.++
T Consensus 156 lGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~ 195 (521)
T PRK03612 156 LGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLW 195 (521)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888654 3566443333333 33344433333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.27 Score=53.40 Aligned_cols=139 Identities=16% Similarity=0.038 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 007201 65 VGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGC 144 (613)
Q Consensus 65 ~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 144 (613)
+-..+..|+... |+++...|..=+...+....+.++..++-+|+ |.-|+=+++.........++..+-..|.
T Consensus 277 f~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~------ 348 (432)
T PF06963_consen 277 FGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPG------ 348 (432)
T ss_pred CcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 344567888755 99999999999999999999999999999996 9999888887766555444433211121
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHh
Q 007201 145 GDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYF 224 (613)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l 224 (613)
+|. +..+...++.+.++-=+|.=+.--+..-++=|..|+++ |++..+..+...++.-.+-..++-.+
T Consensus 349 ----~~~---~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 349 ----SPF---SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred ----CCc---hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 000 11233334444333223333344555667778888887 99999999999999888876654433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.094 Score=56.16 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhc
Q 007201 159 MALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFE 225 (613)
Q Consensus 159 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~ 225 (613)
.+..++..+..|+..|..+.+....+.|..|+++ |.-+++...++-.+|..++.+++-++.
T Consensus 335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5666666777899889999999999999888877 999999999999999988877765553
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.54 Score=51.31 Aligned_cols=161 Identities=19% Similarity=0.142 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhCCC----hhhHHHHHHHHHHHHHHHHHHHHHHhhhccCch-------HHHHHHHHHHHHHHHHHHhhhc
Q 007201 67 VNLVLFLTRVVGQN----NADAANNVSKWTGTVYIFSLLGAFLSDSYWGRY-------KTCAIFQAIFVIGLVSLSVSSY 135 (613)
Q Consensus 67 ~~l~~yl~~~lg~~----~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr-------~~i~~~~~l~~~~~~~~~~~~~ 135 (613)
+.+..|..+..+-+ +-...+.-+.-.+.-+++.|+..++--+. +++ .-+.++.++...+.+.+.....
T Consensus 305 ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~ 383 (498)
T COG3104 305 SSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAGI 383 (498)
T ss_pred chHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665543222 11233444444555566666666666552 433 2344555555555554443310
Q ss_pred ccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHH
Q 007201 136 AFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSL 215 (613)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~ 215 (613)
.. ..| ....+.++++...+++++|+=+..|...++++...|+.- .+..++.+.+....|..
T Consensus 384 -~~---------~~~---~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~ 444 (498)
T COG3104 384 -WF---------GGP---SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQT 444 (498)
T ss_pred -hh---------cCC---CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHH
Confidence 00 001 224568899999999999999999999999999999877 78888888888888888
Q ss_pred HHHHHHHH------hccccchhHHHHHHHHHHHHHHHH
Q 007201 216 FSNTILGY------FEDEGMWALGFWASAGSATMALIL 247 (613)
Q Consensus 216 ~gp~l~g~------l~~~~g~~~~f~~~~~~~~i~~~~ 247 (613)
++..+++. ..+.......|+..+....+..+.
T Consensus 445 l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~ 482 (498)
T COG3104 445 LGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGIL 482 (498)
T ss_pred hhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 77666652 112233444556555444433333
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=94.55 E-value=4.3 Score=44.60 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHH
Q 007201 487 SIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLV 544 (613)
Q Consensus 487 s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~ 544 (613)
.+..++.++++..+..-..+...+++..+++-|..-|++|.+.|..+++|+.--..++
T Consensus 404 Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~v 461 (544)
T PF13000_consen 404 YFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFV 461 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHH
Confidence 3355667888888888888999999999999999999999999999999875444443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.24 Score=52.87 Aligned_cols=124 Identities=12% Similarity=0.041 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCch---hH
Q 007201 446 RMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDG---LK 522 (613)
Q Consensus 446 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~---~r 522 (613)
.+.+|.++..+|++++......... ....+...+.++++++++|.++.=|....+..++++++ .|
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~ 70 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSL------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRR 70 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchh------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhh
Confidence 5677888888888885544311000 11234456778888999999999999999999999866 45
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 007201 523 SFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYI 594 (613)
Q Consensus 523 g~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~ 594 (613)
..+...+....++|..++..+.+.+.+ +.++...|.+.++.++++.+.++...++++..
T Consensus 71 ~~~F~~fY~~in~G~~~~~~~~~~i~~-------------~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 71 DSFFNWFYWGINIGSLFSPTLVPYIQQ-------------NYGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHH-------------CS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhHHHHHHHHhhhhHhhcccchhhcc-------------ccchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 566677778888888887766655542 12355677777777777777666655555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.44 Score=52.07 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccC---CchhH
Q 007201 446 RMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQA---PDGLK 522 (613)
Q Consensus 446 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~---P~~~r 522 (613)
-+.+|.++.+++.+.++.... ...+.......+++..+|..+.....-+...|.+ |.+ +
T Consensus 61 Y~~i~~~~~~~~~~~~~~~~~-----------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~ 122 (433)
T PF03092_consen 61 YMIIGWLLGAVSALVLALLPA-----------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-R 122 (433)
T ss_pred HHHHHHHHHHHHHHHHHhccc-----------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-h
Confidence 455666666555555554421 1112333444556667777777766666666654 545 8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 007201 523 SFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARW 590 (613)
Q Consensus 523 g~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~ 590 (613)
|..++..+.++.+|+.++..+.|.+.... +.+..|.+.+++.++..+..+++..+
T Consensus 123 g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-------------~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 123 GDLQSFVWGVRSVGSLVGSLLSGPLLDSF-------------GPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcC-------------CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 89999999999999999988887655321 12334677676666666666566665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.53 E-value=15 Score=40.85 Aligned_cols=171 Identities=16% Similarity=0.097 Sum_probs=89.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ChhhHHHHHHHHHH-HHHHHHHHHHHHhhhccCchHHHHH
Q 007201 43 GTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQ---NNADAANNVSKWTG-TVYIFSLLGAFLSDSYWGRYKTCAI 118 (613)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~---~~~~~~~~~~~~~~-~~~~~~~~~G~lsDr~~Grr~~i~~ 118 (613)
..++.++.+.+..|+..+.+-.. --+++.+=. ++.....+-....+ +..++..+-.+++|++ +|.+++.+
T Consensus 21 ~E~~k~~~l~~m~f~i~f~y~~l-----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~ 94 (491)
T PF03219_consen 21 SELKKFLPLALMFFFILFNYTIL-----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYI 94 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 33466777766666654443211 122222211 22222333222222 4566677789999996 99999887
Q ss_pred HHHHHHHHHHHHHhhhcccc---cCCCC-C-CCCCC-CCCCCC---chhHHHHHHHHHHHHHhccccch-hhhhhhhccC
Q 007201 119 FQAIFVIGLVSLSVSSYAFL---LKPSG-C-GDEGN-PCGSHS---SLHMALFYLSIYLTALGNGGYQP-NIATFGADQF 188 (613)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~~~---~~~~~-~-~~~~~-~~~~~~---~~~~~~~~~~~~l~g~g~g~~~~-~~~~~~~~~~ 188 (613)
....+.....++++.-. |. +-|.. + ++... |..-.. ..+.|...+.-+..-+-.....+ ..+.+..|.+
T Consensus 95 ~~~~F~~fF~~f~~vly-P~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~it 173 (491)
T PF03219_consen 95 IIIPFLGFFALFAFVLY-PNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEIT 173 (491)
T ss_pred HHHHHHHHHHHHHHHHh-hchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77666655555554321 21 00000 0 00000 000000 00001111111111111112222 4588999999
Q ss_pred CCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhcc
Q 007201 189 DEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFED 226 (613)
Q Consensus 189 p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~ 226 (613)
+.+| -.+.++++..+.|+|..++..+..++.+
T Consensus 174 t~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 174 TVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred CHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888 6799999999999999999988888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.3 Score=48.40 Aligned_cols=163 Identities=17% Similarity=0.034 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCChhhHHHH-HHHHHHHHHHHHHHHHHHhhhc--cCchHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFL--TRVVGQNNADAANN-VSKWTGTVYIFSLLGAFLSDSY--WGRYKTCAIFQ 120 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl--~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~G~lsDr~--~Grr~~i~~~~ 120 (613)
+.++.+....+...+..--+....|..+ ++.++.+......+ .....++..++....+.+++|. +||++++.++.
T Consensus 240 ~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~ 319 (461)
T KOG3098|consen 240 PKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGI 319 (461)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHH
Confidence 3344444443333333322333333333 33445554443322 2333445556667777777662 49999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhh
Q 007201 121 AIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKI 200 (613)
Q Consensus 121 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~ 200 (613)
.+..++.++..+. .|.-. +-++-+.|... ...+.....+.-+++|++-+......+.++++.+| ++ |.
T Consensus 320 ~~~~~~~~li~l~--~p~da--p~~~t~~~~~~-~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~------~~ 387 (461)
T KOG3098|consen 320 IIHLIGFLLIHLS--FPNDA--PLRPTDSPPLL-FTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DD------RA 387 (461)
T ss_pred HHHHHHHHHHhcc--ccccC--CCCCCcccccc-cccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-Cc------hH
Confidence 8888877766554 23210 01111111111 11123445555678899999999999999999994 44 77
Q ss_pred hHHHHHHHHHhHHHHHHHHH
Q 007201 201 AFFSYFYLALNLGSLFSNTI 220 (613)
Q Consensus 201 ~~~~~~~~~~~iG~~~gp~l 220 (613)
.+++++-+-..++..++...
T Consensus 388 ~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 388 QAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 88887666666666554333
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.30 E-value=21 Score=39.29 Aligned_cols=165 Identities=13% Similarity=0.012 Sum_probs=97.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh---hHHHHHHHHHH-HHHHHHHHHHHHhhhccCchHHHHH
Q 007201 43 GTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNA---DAANNVSKWTG-TVYIFSLLGAFLSDSYWGRYKTCAI 118 (613)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~---~~~~~~~~~~~-~~~~~~~~~G~lsDr~~Grr~~i~~ 118 (613)
..++.++.+.+..++..+.++.+. -+++.+..+.. ....+-...-+ ++.++.++-+++.+++ -|.+++.+
T Consensus 24 ~E~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~ 97 (509)
T COG3202 24 YELKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYI 97 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHH
Confidence 345677777776666655543332 33455544433 33444333333 5778888999999996 99999988
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCCCCCCC----------------CCCCchhHHHHHHHHHHHHHhccccch-hhh
Q 007201 119 FQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPC----------------GSHSSLHMALFYLSIYLTALGNGGYQP-NIA 181 (613)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~g~g~g~~~~-~~~ 181 (613)
....+....+++++.-. |. .|---|. ......+-|..-+.-...-+-.....+ ..+
T Consensus 98 ~~~~F~~fF~LFa~Vi~-P~------~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw 170 (509)
T COG3202 98 ILGFFLGFFALFAFVIY-PY------KDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFW 170 (509)
T ss_pred HHHHHHHHHHHHHHHHh-cc------ccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777677666522 21 1110010 000000012111111111121122222 457
Q ss_pred hhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhcc
Q 007201 182 TFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFED 226 (613)
Q Consensus 182 ~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~ 226 (613)
.+.-|+++.++ -.|.++.++...|++..++..+..++.+
T Consensus 171 ~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 171 QFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88889998888 6799999999999999999998888876
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.94 Score=49.54 Aligned_cols=156 Identities=12% Similarity=0.007 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCChh-hHHHHHHHHHHHHHHHHHHHHHHhhhccCch-HHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVV-GQNNA-DAANNVSKWTGTVYIFSLLGAFLSDSYWGRY-KTCAIFQAI 122 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~l-g~~~~-~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr-~~i~~~~~l 122 (613)
|.+|...+..++..+....+.+......+..- +.++. -.-.+...++++-.+|..+..+.- . -++| +.+.+..+.
T Consensus 269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~-p~~~~~~l~i~s~~ 346 (437)
T TIGR00939 269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-W-PDEDSRWLPILSFL 346 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-e-eCCCccchHHHHHH
Confidence 56666666666655555544433333322221 12222 223445556667777766544321 1 1222 133333443
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
=.+...++.++..-|. ...|- .-.+.+..++..+++|+..|-..+....+..+..++++ |..+
T Consensus 347 R~iFIPlf~lcn~~~~--------~~~p~---~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~a 409 (437)
T TIGR00939 347 RVLFIPLFLLCNYPQR--------SRLPV---FFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVA 409 (437)
T ss_pred HHHHHHHHHHhcCCcc--------ccCCe---eecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHH
Confidence 3333333333311110 00000 01235666677888999999888888888888877666 7777
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 007201 203 FSYFYLALNLGSLFSNTI 220 (613)
Q Consensus 203 ~~~~~~~~~iG~~~gp~l 220 (613)
..+...+.++|-.+|..+
T Consensus 410 G~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 410 GALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777887888888777654
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=90.44 E-value=7.1 Score=36.19 Aligned_cols=61 Identities=8% Similarity=0.196 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007201 487 SIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIV 547 (613)
Q Consensus 487 s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i 547 (613)
..+.++++-++.|++.++.-+..-.++.+...++.+++..|++......+..+|.++.-.+
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999999998888889999999999999999999999888888887665433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.26 E-value=8.7 Score=40.48 Aligned_cols=63 Identities=10% Similarity=0.004 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhh-----hhhccCCchhHHHHHHHHH-HHHhHHHHHHHHHHHHHhh
Q 007201 487 SIFWQIPQYVLIGASEVFMYVGQLE-----FFNGQAPDGLKSFGSALCM-TSISLGNYVSSLLVTIVMK 549 (613)
Q Consensus 487 s~~~~i~~~~l~g~~~~~~~p~~~~-----~~~~~~P~~~rg~~~g~~~-~~~~lg~~i~~~l~~~i~~ 549 (613)
....+++.-++.|++..+.+...=+ .-.+-.|++..+...+... +.+.+-.++++.+...+.+
T Consensus 120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~ 188 (354)
T PF05631_consen 120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLAD 188 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 3456667778888887776654333 3334567776666666555 3445555555555554443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.94 Score=48.91 Aligned_cols=131 Identities=12% Similarity=0.063 Sum_probs=89.0
Q ss_pred ccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCC
Q 007201 403 PASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESK 482 (613)
Q Consensus 403 ~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (613)
.+.+....|+..++..|+.+...|+.-.|+|||. + -+.++.++++++++++++....-+.- +++.+.+
T Consensus 69 ~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR------P--fI~~~s~~i~~~l~Lig~aaDig~~l----gd~~~~~ 136 (498)
T KOG0637|consen 69 SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR------P--FILAGSLLIAVSLFLIGYAADIGLLL----GDNERKP 136 (498)
T ss_pred ccccccccccccceeccccccccccccccccccc------c--hHHHhhHHHHHHHhhhhhHhhhhHHh----cCCcccc
Confidence 3455666788899999999999888888887764 2 46677788888888887764331111 1222221
Q ss_pred CccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHH-HHHHHHHHHhHHHHHHHHHHH
Q 007201 483 ASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSF-GSALCMTSISLGNYVSSLLVT 545 (613)
Q Consensus 483 ~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~-~~g~~~~~~~lg~~i~~~l~~ 545 (613)
.-..+....++...+.=++.-....+.=++..+.+-++.+.+ +.+.+.+.-.+|+.+|-.+.+
T Consensus 137 ~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 137 VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 223344455666666767766666555588888887666666 999999999999988865543
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.25 E-value=4.6 Score=42.34 Aligned_cols=96 Identities=10% Similarity=0.042 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCc--c
Q 007201 487 SIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNK--G 564 (613)
Q Consensus 487 s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~--~ 564 (613)
++|+.-..+++......+..+....-+++....+.-|...|+++++.-+=+.+-.+++ .+.. ++.-+... -
T Consensus 325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~----g~~L~ir~Q~~ 397 (433)
T KOG3810|consen 325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLIV---VDDR----GLGLDIRTQFV 397 (433)
T ss_pred ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEE---Eccc----ccCCCcceeEE
Confidence 4556667788888777777777666666666677788899998877655443333221 1111 11111110 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q 007201 565 HLDRFYFLLAALTTADLFIYIICAR 589 (613)
Q Consensus 565 ~~~~~f~~~a~~~~~~~~~~~~~~~ 589 (613)
-|..+|.+++.+.++.....+..++
T Consensus 398 ~Y~~Yf~v~~~i~~~~~~~~~~~~~ 422 (433)
T KOG3810|consen 398 VYSSYFIVLGVIFLIGFGIEYLMCR 422 (433)
T ss_pred EEeehHHHHHHHHHHHHHHHHHHhh
Confidence 2445677888887777665444443
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.20 E-value=9.1 Score=39.82 Aligned_cols=115 Identities=11% Similarity=0.028 Sum_probs=65.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007201 42 TGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA 121 (613)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~ 121 (613)
+..-|.++++....++...++-+.. ++ +...+.+..+.+. +...+......++.+.+..+ +|-|+++.++..
T Consensus 25 ~~~~knv~i~s~~fl~~f~a~~gl~-nl----q~~vn~~lg~~sl--~~~y~~l~~s~m~~~~~Ir~-~g~K~tm~lav~ 96 (390)
T KOG3097|consen 25 LGILKNVLILSIAFLLTFTAYLGLQ-NL----QTSVNYDLGTVSL--GALYLSLIDSSMFMPLLIRF-LGTKWTMVLAVF 96 (390)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHH-HH----HHHHhcCcccchh--hhhhHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 3444667666665555544443332 33 3333333332222 22333444555555677777 599999988765
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccC
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQF 188 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~ 188 (613)
..... .-....|. +..++.+-...|+|.+..++.-.+++++.-
T Consensus 97 ~Y~ly----iA~Nl~pr--------------------~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 97 PYALY----IAANLEPR--------------------YETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHH----HHhhcchh--------------------HHhhccHHHhhccccccccccCcceecHHH
Confidence 44332 22222222 556777888899999988888777776654
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=86.39 E-value=58 Score=36.02 Aligned_cols=56 Identities=14% Similarity=-0.066 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhh-hhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 007201 494 QYVLIGASEVFMYV-GQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMK 549 (613)
Q Consensus 494 ~~~l~g~~~~~~~p-~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~ 549 (613)
.|+...+-..++.. ..|.++.+....+...+..++....+++|..+++.+...+.+
T Consensus 134 FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 134 FYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333443 788999999999999999999999999999999988877664
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=85.18 E-value=0.29 Score=50.93 Aligned_cols=117 Identities=11% Similarity=0.010 Sum_probs=3.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHH
Q 007201 87 NVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSI 166 (613)
Q Consensus 87 ~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (613)
....++++-.+|..+.++.-=+.-.+|+++ +..+.=.+...++.++...|.. -..|. .-.+.+..++..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~-------~~~~~---~~~~d~~~~i~~ 255 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRP-------RYLPV---LFNSDAWFIILM 255 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhccc-------ccCCC---cccchHHHHHHH
Confidence 345678888888887776421100234433 3333333333333332111110 00000 012345667778
Q ss_pred HHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHH
Q 007201 167 YLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTI 220 (613)
Q Consensus 167 ~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l 220 (613)
+++|+..|-..+....+..+..++++ |..+-.+..+..++|-.+|..+
T Consensus 256 ~l~g~TNGyl~tl~m~~~p~~v~~~e------~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 256 LLFGFTNGYLSTLAMMYAPKSVSPEE------RELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -----------HHHH---------------------------------------
T ss_pred HHHHHccchhhhceeeeCCCcCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999989999999999888666 6666666666777777666543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=83.81 E-value=18 Score=35.37 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhhccCCc-hhHHHHHHHHHH-HHhHHHHHHHHHHHHHhh
Q 007201 488 IFWQIPQYVLIGASEVFMYVGQLEFFNGQAPD-GLKSFGSALCMT-SISLGNYVSSLLVTIVMK 549 (613)
Q Consensus 488 ~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~-~~rg~~~g~~~~-~~~lg~~i~~~l~~~i~~ 549 (613)
.+.++...+..+++.+...|....++.+..|+ +.|+...+.... ...++..+++.+.+.+..
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555668888888889999999999998 678888888887 577788888866665554
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.13 E-value=8.3 Score=39.01 Aligned_cols=141 Identities=14% Similarity=0.033 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCc--hHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHH
Q 007201 84 AANNVSKWTGTVYIFSLLGAFLSDSYWGR--YKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMAL 161 (613)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~G~lsDr~~Gr--r~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (613)
-|.+.+.+.++.++++-+...+..|- .. ...+.+..++..+...+..+. + .++|. ..++..
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt-~-----------~vsP~----kes~~~ 346 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILT-S-----------SVSPS----KESPSE 346 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHH-h-----------ccCCC----cCCchH
Confidence 36777777777777666666665552 11 223444444433333322222 1 11122 112233
Q ss_pred HHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 007201 162 FYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSA 241 (613)
Q Consensus 162 ~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~ 241 (613)
-+++..++-...|..+|..+-+=++..|++. |++.+.++..-.|+-..++-...-.=..-.+-+..|.++.+..
T Consensus 347 s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~ 420 (454)
T KOG4332|consen 347 SLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFL 420 (454)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHH
Confidence 3556666777889999999999999999998 9999999888888766543211000011134567788887776
Q ss_pred HHHHHH
Q 007201 242 TMALIL 247 (613)
Q Consensus 242 ~i~~~~ 247 (613)
.++.+.
T Consensus 421 ~~a~i~ 426 (454)
T KOG4332|consen 421 FVASIL 426 (454)
T ss_pred HHHHHH
Confidence 666554
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.69 E-value=88 Score=33.74 Aligned_cols=57 Identities=23% Similarity=0.155 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHH
Q 007201 487 SIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLL 543 (613)
Q Consensus 487 s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l 543 (613)
+-+|.+....++|+..|-.....+.+.-+..|++.+..+..+..+.-..|-..|..+
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 456788888999999999888888999999998888777777666666665555433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=80.06 E-value=44 Score=36.16 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007201 487 SIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVM 548 (613)
Q Consensus 487 s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~ 548 (613)
+.+++-...++.|++... -...++++...+|+++--++++-.-...-+|..++.++..++.
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677777777544 4667799999999988888887777766666666666655443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 613 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 2e-22 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 456 bits (1176), Expect = e-155
Identities = 121/549 (22%), Positives = 205/549 (37%), Gaps = 63/549 (11%)
Query: 60 LAFFGVGVNLVLFLTRVV------GQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRY 113
+F+G+ L FL + A A + + VY F LLG +++D ++G+Y
Sbjct: 26 FSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY 85
Query: 114 KTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGN 173
T I+ +G L++ + FY ++L ALG+
Sbjct: 86 NTILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGS 123
Query: 174 GGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALG 233
GG +P +++F DQFD+ + F FY +N GS F++ + A+
Sbjct: 124 GGIKPLVSSFMGDQFDQSNKSL---AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVA 180
Query: 234 FWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFY 293
F +A + F +G RY H P V+ +A + L+
Sbjct: 181 FGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIG--LVLA 238
Query: 294 ERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVT 353
G+ ++ NI L A V+ G G ++ +
Sbjct: 239 LIGGV--SAAYALVNIPTLGIVAGLCCAMVLVMGFV------GAGASLQLERARKSHPDA 290
Query: 354 QVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILS 413
V+ V+ +LR+L ++ + +F Q AS ++ Q + PA M + + L
Sbjct: 291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAN---DMVKPQWFEPAMMQALNPLL 347
Query: 414 VAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSI 473
V I VL P +ER+ K T L++MG G+ I ++ I G +++
Sbjct: 348 VMLLIPFNNFVLYPAIERMGVK-----LTALRKMGAGIAITGLSWIVVGTIQLMM----- 397
Query: 474 KDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSI 533
S LSIFWQI Y L+ EV + LEF QAP +K + S+
Sbjct: 398 -------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSV 450
Query: 534 SLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKY 593
++GN L V + + ++ F A ++ + AR Y+
Sbjct: 451 TVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQ--MFFFAGFAILAAIVFALYARSYQM 508
Query: 594 IKFEERTVG 602
+ G
Sbjct: 509 QDHYRQATG 517
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 7e-20
Identities = 37/204 (18%), Positives = 82/204 (40%), Gaps = 32/204 (15%)
Query: 59 TLAFFGVGVNLVLFLTRVV-----GQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRY 113
+++G+ L+ ++ ++ A AA+ ++ + VY+ +G F++D G
Sbjct: 26 RFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR 85
Query: 114 KTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGN 173
+ ++G + L++ + + SI L +G
Sbjct: 86 PAVFWGGVLIMLGHIVLALPF-----------------------GASALFGSIILIIIGT 122
Query: 174 GGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALG 233
G +PN++T +DE D + A FS F +NLG+ + I+G ++ + +
Sbjct: 123 GFLKPNVSTLVGTLYDEHDRRRD----AGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVA 178
Query: 234 FWASAGSATMALILFLIGTPRYRH 257
F +A + L+++ G +
Sbjct: 179 FSLAAIGMFIGLLVYYFGGKKTLD 202
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 32/204 (15%), Positives = 69/204 (33%), Gaps = 39/204 (19%)
Query: 361 ILRLLPIWLCTILYSVVFTQMAS---LFVEQGAAMKTNISTFHIPPASMSSFDILSVAAF 417
++ +P+++ +L+ + Q + F + + + P + S + F
Sbjct: 282 VVSYIPLFIAAVLFWAIEEQGSVVLATFAAE------RVDSSWFPVSWFQSLN----PLF 331
Query: 418 IFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIA-----IMAMISAGVVEIFRLKYS 472
I + P L + + VGL+ A +MA+ A
Sbjct: 332 IML----YTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT------- 380
Query: 473 IKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTS 532
+ +S W + + L+ E+ + L AP S ++ S
Sbjct: 381 ----------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLS 430
Query: 533 ISLGNYVSSLLVTIVMKISTRPGW 556
S+G+ +++ LVT+ S +
Sbjct: 431 SSVGSALNAQLVTLYNAKSEVAYF 454
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 3e-05
Identities = 54/412 (13%), Positives = 116/412 (28%), Gaps = 125/412 (30%)
Query: 208 LALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSR 267
+AL+ S + + + FW + + + + P S
Sbjct: 166 VALD--VCLSYKVQCKMDFKI-----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 268 ICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGA----RNILHTQGFKFLD---K 320
I H + R +K N+ + + + + K
Sbjct: 219 HSS-----------NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 321 AAVITR-KSDNDKNNGGDGENIDMRNPWVLCTVTQVEE-----VKCILRLLPIWLCTILY 374
+ TR K D + +I + + + T +V+ + C + LP + T
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 375 SVVFTQMASLFVEQGAAMKTNISTF----HIPPASMSSFDILSVAAFIFIYRRVLDPLVE 430
+ S+ +++ ++T+ H+ + D L+ + VL+P
Sbjct: 328 RRL-----SII---AESIRDGLATWDNWKHV------NCDKLTTIIESSL--NVLEP--- 368
Query: 431 RLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFW 490
E ++M L + F + LS+ W
Sbjct: 369 -----------AEYRKMFDRLSV-------------FP-----PSAHI---PTILLSLIW 396
Query: 491 QIPQYVLIGASEVFMYVGQLE---FFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIV 547
S+V + V +L Q + + S+ + +
Sbjct: 397 FDVIK-----SDVMVVVNKLHKYSLVEKQPKESTI---------------SIPSIYLELK 436
Query: 548 MKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFI-----YIICARWYKYI 594
+K+ L++ +D Y + + DL Y +Y +I
Sbjct: 437 VKLENEY-----ALHRSIVDH-YNIPKTFDSDDLIPPYLDQY-----FYSHI 477
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 52/393 (13%), Positives = 96/393 (24%), Gaps = 124/393 (31%)
Query: 3 LSNVCNEVIVKE-KIKNDQEEAC-----TLDGAV-DRHGRPAIKRRTGTWIAGILILVNQ 55
L NV N + C T V D + L +
Sbjct: 250 LLNVQNAKAWNAFNLS------CKILLTTRFKQVTDFLSAATTTHIS-------LDHHSM 296
Query: 56 GLA---TLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSD----- 107
L + + + D V S++ + D
Sbjct: 297 TLTPDEVKSLLL----------KYLDCRPQDLPREVLT--TNPRRLSIIAESIRDGLATW 344
Query: 108 SYW-------------------------GRYKTCAIFQA-----IFVIGLVSLSVSSY-- 135
W + ++F ++ L+ V
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 136 ----AFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNI--ATFGADQFD 189
L K S E P S S+ SIYL + + +
Sbjct: 405 MVVVNKLHKYSLV--EKQPKESTISIP------SIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 190 EEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGY-FEDEGMWALGFWASAGSATMALILF 248
+ + YFY + +G+ ++ T+ ++F
Sbjct: 457 KTFDSDDLIPPYLDQYFY-----------SHIGHHLKNIEH--------PERMTLFRMVF 497
Query: 249 L----IGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYER--DGIKQTS 302
L + + RH N I + + +K I D+D YER + I
Sbjct: 498 LDFRFLEQ-KIRHDSTAWNASGSILN-TLQQLKFYKPYICDNDPK---YERLVNAILDFL 552
Query: 303 QNGARNILHTQGFKFLDKAAVITRKSDNDKNNG 335
N++ + K+ D + R + ++
Sbjct: 553 PKIEENLICS---KYTD----LLRIALMAEDEA 578
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 613 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.93 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.93 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.87 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.85 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.53 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.41 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.36 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.15 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.12 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.85 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.04 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=288.14 Aligned_cols=485 Identities=24% Similarity=0.347 Sum_probs=291.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH
Q 007201 44 TWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVG------QNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCA 117 (613)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg------~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~ 117 (613)
++|.++.+++..++..+.+|++..+++.|+++++| ++..+++++.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44667778888999999999999999999999999 999999999999999999999999999999339999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccc
Q 007201 118 IFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGH 197 (613)
Q Consensus 118 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~ 197 (613)
++.++..++.+++.++ + .+.+.++++|++.|++.+...+...++++|++|+++
T Consensus 90 ~~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----- 142 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIF---E-------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN----- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHT---S-------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT-----
T ss_pred HHHHHHHHHHHHHHHh---c-------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc-----
Confidence 9999999988888876 2 136778899999999999999999999999999888
Q ss_pred hhhhH---HHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHH
Q 007201 198 SKIAF---FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVA 274 (613)
Q Consensus 198 ~r~~~---~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (613)
|++. +++++.+.++|..++|.+++++.+..||+..|++.++..+++.+.++...++.++++|.+++..+..+.+..
T Consensus 143 -r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (524)
T 2xut_A 143 -KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221 (524)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence 7544 455999999999999999999988889999999888776666655554444333322322222121122111
Q ss_pred HHhhccccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhc-cCCCCCCCCCCCCCCCCCCCCcc-----
Q 007201 275 ATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVIT-RKSDNDKNNGGDGENIDMRNPWV----- 348 (613)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~----- 348 (613)
..+++....++ ... ..+.. .... ......+......+....+.. ... +++.+.+|+
T Consensus 222 ~~~~~~~~~~~--~~~-~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 283 (524)
T 2xut_A 222 ALLTKVEGKGN--IGL-VLALI-GGVS---AAYALVNIPTLGIVAGLCCAMVLVM-----------GFVGAGASLQLERA 283 (524)
T ss_dssp -----CTTHHH--HHH-HHHHH-HHHH---HHHTGGGTTTTCSSHHHHHHHHHHH-----------HHHHTGGGTHHHHS
T ss_pred HHhhhhcccCc--cch-hhhhh-hhhh---hhhhhcccchhhhhhhhhhhhhhhh-----------cccccchhhHHhhh
Confidence 22211100000 000 00000 0000 000000000000000000000 000 000001110
Q ss_pred --ccchhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHH
Q 007201 349 --LCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLD 426 (613)
Q Consensus 349 --~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~ 426 (613)
.......+++|+......++.....++..+.+..+.+..+...++... + .+.+.+..++.+..++..++.+++..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (524)
T 2xut_A 284 RKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLY 360 (524)
T ss_dssp CCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC--
T ss_pred hccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhH
Confidence 000011223344444555555566666666666554444333333221 1 24566777788888899999998877
Q ss_pred HhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhh
Q 007201 427 PLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMY 506 (613)
Q Consensus 427 ~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~ 506 (613)
|..+|++++. +..+.+.+|+++.+++++++.+......+ ....+.+++++.+++.+++++...
T Consensus 361 ~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~g~~~~~~~ 423 (524)
T 2xut_A 361 PAIERMGVKL-----TALRKMGAGIAITGLSWIVVGTIQLMMDG------------GSALSIFWQILPYALLTFGEVLVS 423 (524)
T ss_dssp ---------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTT------------TCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHhcC------------CCCcCHHHHHHHHHHHHHHHHHHH
Confidence 7667765544 55667778888888887776544211000 112355677888999999999999
Q ss_pred hhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHHHHH
Q 007201 507 VGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPG-NLNKGHLDRFYFLLAALTTADLFIYI 585 (613)
Q Consensus 507 p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~-~~~~~~~~~~f~~~a~~~~~~~~~~~ 585 (613)
|..++++.+.+|++.||+++|+++....+|+.+++.+.+.+.+.++ .+|.+. +.+. ....|++.++++++++++++
T Consensus 424 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 500 (524)
T 2xut_A 424 ATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV-TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFA 500 (524)
T ss_dssp HHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH-HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccccccccc--cccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887653210 112110 0111 12237777888888887777
Q ss_pred Hhhhhccccccc
Q 007201 586 ICARWYKYIKFE 597 (613)
Q Consensus 586 ~~~~~~~~~~~~ 597 (613)
++.+++++++.+
T Consensus 501 ~~~~~~~~~~~~ 512 (524)
T 2xut_A 501 LYARSYQMQDHY 512 (524)
T ss_dssp ------------
T ss_pred HHHHHhccchhh
Confidence 777666554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-30 Score=279.30 Aligned_cols=444 Identities=16% Similarity=0.249 Sum_probs=296.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh-ccCchHH
Q 007201 42 TGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRV-----VGQNNADAANNVSKWTGTVYIFSLLGAFLSDS-YWGRYKT 115 (613)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr-~~Grr~~ 115 (613)
++++|.++.+++..++..+.+|++..+++.|+++. +|.+..+.+++.+.+.++..++++++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 44567888999999999999999999999999998 99999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccc
Q 007201 116 CAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKE 195 (613)
Q Consensus 116 i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~ 195 (613)
+.++.++..++.++++++ + +.+.++++|++.|++.|...+...++++|++|+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-- 142 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP---F--------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR-- 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC---C--------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT--
T ss_pred HHHHHHHHHHHHHHHHHh---h--------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc--
Confidence 999999999998888775 2 366788999999999999999999999999998762
Q ss_pred cchhhhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCccccc---CCCCC-hhhHHHHH
Q 007201 196 GHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHF---KPTGN-PLSRICQV 271 (613)
Q Consensus 196 ~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~ 271 (613)
.|++++++++.+.++|..++|.+++++.+..||++.|++.++..+++.+.++...++...+ ++... ...+..+.
T Consensus 143 --~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
T 4aps_A 143 --RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPL 220 (491)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHH
T ss_pred --cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHH
Confidence 2677888899999999999999999999889999999998777666665555443322111 11111 11111111
Q ss_pred HHH--------------HHhhccccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCC
Q 007201 272 VVA--------------ATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGD 337 (613)
Q Consensus 272 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~ 337 (613)
... ....... ..+ +. ..+.. .............
T Consensus 221 ~~~~g~~l~~~~~~~~~~~~~~~~--~~~--~~----------------~~~~~--~~~~~~~~~~~~~----------- 267 (491)
T 4aps_A 221 LVKVSLAVAGFIAIIVVMNLVGWN--SLP--AY----------------INLLT--IVAIAIPVFYFAW----------- 267 (491)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHSSC--CTT--HH----------------HHHHH--HHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc--ccc--cc----------------hhhhh--HHHHHHHHHHHHH-----------
Confidence 000 0000000 000 00 00000 0000000000000
Q ss_pred CCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehhh-cccCccccccCccccccchhHHHHH
Q 007201 338 GENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAA-MKTNISTFHIPPASMSSFDILSVAA 416 (613)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 416 (613)
.|+... ....++++......+++....++..+.+..+.+..+... .+.+ ....+.+..++.+..++
T Consensus 268 --------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 334 (491)
T 4aps_A 268 --------MISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIML 334 (491)
T ss_dssp --------HC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHH
T ss_pred --------Hhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHH
Confidence 000000 011223333344455556666666666665543322211 1111 14567778888888888
Q ss_pred HHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHH
Q 007201 417 FIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYV 496 (613)
Q Consensus 417 ~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~ 496 (613)
..++.+++. +|++||+ .....++.+|..+.+++++++.+....... ....+.++.++.++
T Consensus 335 ~~~~~~~l~----~r~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 335 YTPFFAWLW----TAWKKNQ----PSSPTKFAVGLMFAGLSFLLMAIPGALYGT------------SGKVSPLWLVGSWA 394 (491)
T ss_dssp HHHHHHHHH----HHTTTC-------CHHHHHHHHHHHHHHHTTTHHHHHHCCC------------CTTCCTHHHHHHHH
T ss_pred HHHHHHHHH----HHHhccC----CCchHHHHHHHHHHHHHHHHHHHHHHhcCC------------CCCccHHHHHHHHH
Confidence 888888764 5555443 245567778888888888777665422100 12335667788889
Q ss_pred HHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHH
Q 007201 497 LIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAAL 576 (613)
Q Consensus 497 l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~ 576 (613)
+.+++.+...|..++++.+.+|++.||+++|+.+....+|+.+++.+.+.+.+ .++...|++.+++
T Consensus 395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~--------------~~~~~~~~~~~~~ 460 (491)
T 4aps_A 395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA--------------KSEVAYFSYFGLG 460 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG--------------SSTTHHHHHTHHH
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------ccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988765542 1234567888888
Q ss_pred HHHHHHHHHHhhhhccc
Q 007201 577 TTADLFIYIICARWYKY 593 (613)
Q Consensus 577 ~~~~~~~~~~~~~~~~~ 593 (613)
++++.++.+++.++.++
T Consensus 461 ~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 461 SVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887777776665544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=240.80 Aligned_cols=401 Identities=8% Similarity=-0.022 Sum_probs=257.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007201 44 TWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIF 123 (613)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~ 123 (613)
+++.++.+++..+......+.+...++.+. +++ .++.+.+++.+++.++..++.+++|+++||+ |||+++.++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 456667777777777777666666666555 466 9999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHh----hhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchh
Q 007201 124 VIGLVSLSV----SSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSK 199 (613)
Q Consensus 124 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r 199 (613)
.++.+++++ + + +.+.++++|++.|++.+...+...++++|.+|+++ |
T Consensus 103 ~~~~~~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r 153 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT---S--------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R 153 (451)
T ss_dssp HHHHHHHHHCHHHH---S--------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H
T ss_pred HHHHHHHHhhhhcc---c--------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h
Confidence 999988888 5 2 25678899999999999999999999999999888 9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhh
Q 007201 200 IAFFSYFYLALNLGSLFSNTILGYFEDEGM-WALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRK 278 (613)
Q Consensus 200 ~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (613)
++++++.+.+.++|..++|.+++++.+..| |++.|++.++..++..+..+...++.+......+
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 218 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP--------------- 218 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS---------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC---------------
Confidence 999999999999999999999999888888 9999998887766555544444333211110000
Q ss_pred ccccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchh-hhHH
Q 007201 279 WKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVT-QVEE 357 (613)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 357 (613)
.+ +. + ++.. ++ .. . +++...+++....+ ..++
T Consensus 219 ------~~--~~---~----~~~~----~~-----------~~-----~------------~~~~~~~~~~~~~~~~~~~ 251 (451)
T 1pw4_A 219 ------IE--EY---K----NDYP----DD-----------YN-----E------------KAEQELTAKQIFMQYVLPN 251 (451)
T ss_dssp ------CT--TT---C----CC---------------------------------------------CCTHHHHHHTSSC
T ss_pred ------hh--hh---c----cccc----cc-----------ch-----h------------hhhcccccccchHHHHHcC
Confidence 00 00 0 0000 00 00 0 00000011100000 0011
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhh--ccC
Q 007201 358 VKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERL--TRK 435 (613)
Q Consensus 358 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~--~~~ 435 (613)
++.....+..+.....+.......+.++ ...++......+.+.....+..++..++.+++ .+|+ ++|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~~~~ 320 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYL-------KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM----SDKVFRGNR 320 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHB-------TTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCc
Confidence 2222222222222222333222222111 11110001122344555556666666666665 4454 332
Q ss_pred CCCCCCChhHHHHHHHHHHH-HHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 007201 436 SGTRGFTELQRMGVGLVIAI-MAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFN 514 (613)
Q Consensus 436 ~~~~~~~~~~~~~~G~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~ 514 (613)
. .+.++..+.. ++++++.+. ...+.+......++.|++.....+..+.++.
T Consensus 321 ~---------~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 372 (451)
T 1pw4_A 321 G---------ATGVFFMTLVTIATIVYWMN-------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHAL 372 (451)
T ss_dssp H---------HHHHHHHHHHHHHHHHTTSC-------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred h---------hHHHHHHHHHHHHHHHHHHh-------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 2 3444444443 444444221 1123445566677788888888888889999
Q ss_pred ccCCchhHHHHHHHHHHHHhH-HHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 007201 515 GQAPDGLKSFGSALCMTSISL-GNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARW 590 (613)
Q Consensus 515 ~~~P~~~rg~~~g~~~~~~~l-g~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~ 590 (613)
+.+|++.||+++|+.+....+ |..+++.+.+.+.+.. ++...|++.+++.+++++..++..++
T Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 373 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999 9999999999876532 24567888888777777766655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.8e-24 Score=227.18 Aligned_cols=360 Identities=11% Similarity=0.039 Sum_probs=233.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007201 42 TGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA 121 (613)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~ 121 (613)
+++++.++.+++..+...+..+.....+| ++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 34456666666666677666665555555 46788999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
+..++.+++...... .+.+.++++|++.|++.|...+...++++|.+|+++ |++
T Consensus 100 ~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 153 (438)
T 3o7q_A 100 LYALGAALFWPAAEI--------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHF 153 (438)
T ss_dssp HHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHH
T ss_pred HHHHHHHHHHhcccc--------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHH
Confidence 999998888332111 237889999999999999999999999999999998 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhc-cccc-------------------------hhHHHHHHHHHHHHHHHHHHHcC-Cc
Q 007201 202 FFSYFYLALNLGSLFSNTILGYFE-DEGM-------------------------WALGFWASAGSATMALILFLIGT-PR 254 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l~-~~~g-------------------------~~~~f~~~~~~~~i~~~~~~~~~-~~ 254 (613)
++++.+.+.++|..++|.+++++. +..+ |++.|++.+...++..+.++..+ ++
T Consensus 154 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~ 233 (438)
T 3o7q_A 154 RLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA 233 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999887 5444 89998777655554444433321 11
Q ss_pred ccccCCCCChhhHHHHHHHHHHhhccccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCC
Q 007201 255 YRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNN 334 (613)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 334 (613)
.+++++.++. + .+ . +.
T Consensus 234 ~~~~~~~~~~---------------------~-~~--------------------------~---~~------------- 249 (438)
T 3o7q_A 234 LQSDNHSDAK---------------------Q-GS--------------------------F---SA------------- 249 (438)
T ss_dssp CTTTCCCCSS---------------------T-TS--------------------------H---HH-------------
T ss_pred cccccccccc---------------------c-cc--------------------------h---hh-------------
Confidence 1100000000 0 00 0 00
Q ss_pred CCCCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHH
Q 007201 335 GGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSV 414 (613)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 414 (613)
+++ +..++++.....+..+.....+.....+.+.++..+..+++ ....+.+..+..+..
T Consensus 250 -----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~ 308 (438)
T 3o7q_A 250 -----------SLS----RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT------AGFAANYLTGTMVCF 308 (438)
T ss_dssp -----------HHH----HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC------HHHHHHHHHHHHHHH
T ss_pred -----------hHH----HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc------hhHHHHHHHHHHHHH
Confidence 000 00001111111122222222222222222221011100111 112234444445555
Q ss_pred HHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHH
Q 007201 415 AAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQ 494 (613)
Q Consensus 415 ~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~ 494 (613)
++..++.+++ .+|+++| +.+.++.++.+++++++.+.. +. +.+..
T Consensus 309 ~~~~~~~g~l----~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~ 353 (438)
T 3o7q_A 309 FIGRFTGTWL----ISRFAPH---------KVLAAYALIAMALCLISAFAG---------------------GH-VGLIA 353 (438)
T ss_dssp HHHHHHHHHH----HHHSCHH---------HHHHHHHHHHHHHHHHHHHCC---------------------HH-HHHHH
T ss_pred HHHHHHHHHH----HHHhcch---------HHHHHHHHHHHHHHHHHHHcC---------------------Cc-HHHHH
Confidence 6666666665 4555433 255666666666665554321 11 23444
Q ss_pred HHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 007201 495 YVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKIS 551 (613)
Q Consensus 495 ~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~ 551 (613)
.++.+++.+...|..+++..+..|++ ++.++++.. .+.+|+.++|.+.+.+.+..
T Consensus 354 ~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 354 LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 57778888888899999989999977 889998877 67799999999999887654
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=242.10 Aligned_cols=418 Identities=14% Similarity=0.084 Sum_probs=226.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHH
Q 007201 81 NADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMA 160 (613)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (613)
..+.+++++++.++..++++++|+++||+ |||++++++.+++.++.++++++........ ...........+.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~-----~~~~~~~~~a~~~~ 127 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSIN-----PDNTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS-----SSSSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----chhHHHHHHhhhHH
Confidence 34567888999999999999999999996 9999999999999999998886411000000 00000001134588
Q ss_pred HHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccc--------cchhH
Q 007201 161 LFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDE--------GMWAL 232 (613)
Q Consensus 161 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~--------~g~~~ 232 (613)
.++++|+++|+|.|+..+..+.+++|..|++. |++..++.+.+..+|..+++.++..+... .+|+.
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence 89999999999999999999999999999998 99999999999999999998887765432 24665
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccCCcccchhhhcccccccccCCccccccc
Q 007201 233 GFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHT 312 (613)
Q Consensus 233 ~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (613)
.+.+..+..++..+..+. .++.++--.......+..+.+.+...+.... .. ..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~-~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~-----~~--~~~------------------ 255 (491)
T 4gc0_A 202 MFASECIPALLFLMLLYT-VPESPRWLMSRGKQEQAEGILRKIMGNTLAT-----QA--VQE------------------ 255 (491)
T ss_dssp HHHTTHHHHHHHHHHGGG-SCCCHHHHHHTTCHHHHHHHHHHHHHHHHHH-----HH--HHH------------------
T ss_pred Hhhhhhhhhhhhhhhhhc-CCCChHHHHHcCchhHHHHhHHHhcCCchhH-----HH--HHH------------------
Confidence 555444433333222222 2211100000000000001110000000000 00 000
Q ss_pred ccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHH-HHHHHHHH-hHHHhhhhhcccceeeeehh
Q 007201 313 QGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCIL-RLLPIWLC-TILYSVVFTQMASLFVEQGA 390 (613)
Q Consensus 313 ~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 390 (613)
.+......+. .... .....+++.. .....+.. ...+.....+.+. . . .
T Consensus 256 ------~~~~~~~~~~---------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~--~ 305 (491)
T 4gc0_A 256 ------IKHSLDHGRK---------------TGGR-----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPE-V-F--K 305 (491)
T ss_dssp ------HHHHHHHHHH---------------HTTH-----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHH-H-H--H
T ss_pred ------HHHHHHhhhh---------------hhhH-----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchH-H-H--H
Confidence 0000000000 0000 0000011111 11111100 0001111110000 0 0 0
Q ss_pred hcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007201 391 AMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLK 470 (613)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 470 (613)
..... .........+..+..++...+...+ .+|++||+ .+..+..+++++++.++.....
T Consensus 306 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l----~dr~Grr~---------~~~~~~~~~~~~~~~l~~~~~~--- 365 (491)
T 4gc0_A 306 TLGAS----TDIALLQTIIVGVINLTFTVLAIMT----VDKFGRKP---------LQIIGALGMAIGMFSLGTAFYT--- 365 (491)
T ss_dssp HSSCC----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCSHH---------HHHHHHHHHHHHHHHHHHHHHT---
T ss_pred hcCCC----ccchhhHHHHHHHHHHHHHHHHHHH----HHhhcCcc---------hhccchHHHHHHHHHHHHHHhc---
Confidence 00000 1011112222233334444444443 66777665 5566666666666666544321
Q ss_pred hccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 007201 471 YSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKI 550 (613)
Q Consensus 471 ~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~ 550 (613)
.......++..+++.........|..+.+..|.+|.+.|++++|+.+..+++++.+++.+.+.+...
T Consensus 366 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~ 432 (491)
T 4gc0_A 366 -------------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN 432 (491)
T ss_dssp -------------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred -------------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222222222223344577788999999999999999999999999999998887765432
Q ss_pred cCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccchh
Q 007201 551 STRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFEERTVGDNAH 606 (613)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (613)
. |.. ...+....|++++++++++.++.+++.+|+|+++.||.++--+++
T Consensus 433 ~----~~~---~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 433 S----WLV---AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp H----HHH---HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred H----HHH---hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence 1 000 001123468888999999999999999999999999876544433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=205.70 Aligned_cols=166 Identities=11% Similarity=0.108 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 007201 49 ILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLV 128 (613)
Q Consensus 49 ~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~ 128 (613)
+.+++..+............++.+ .+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 445556666666666666666654 568999999999999999999999999999999996 999999999999999988
Q ss_pred HHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHH
Q 007201 129 SLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYL 208 (613)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~ 208 (613)
++.++ .+.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+.
T Consensus 81 ~~~~~-----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 131 (375)
T 2gfp_A 81 VAVTT-----------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNM 131 (375)
T ss_dssp HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHH
T ss_pred HHHHh-----------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHH
Confidence 88876 247788999999999999999999999999999888 9999999999
Q ss_pred HHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 007201 209 ALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMAL 245 (613)
Q Consensus 209 ~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~ 245 (613)
..++|..++|.+++++.+..||+..|++.++..++..
T Consensus 132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 9999999999999999988899999887776554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=210.67 Aligned_cols=392 Identities=13% Similarity=0.060 Sum_probs=217.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.++.+....++....+..+.++++.|+++++|+++.+.+++.+.+.++..++++++|+++||+ ||||+++++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 5666676766777777777788999999988999999999999999999999999999999996 999999988776654
Q ss_pred HHHHH---HhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 126 GLVSL---SVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 126 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
+...+ .+. +. ....++..+.+.+++.|...+...+...+..++.. |.|+..
T Consensus 86 ~~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~ 139 (417)
T 2cfq_A 86 MFAPFFIFIFG---PL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFE 139 (417)
T ss_dssp CHHHHHHHTHH---HH-------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCC
T ss_pred HHHHHHHHHHH---HH-------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccc
Confidence 32111 111 00 00002223333334344333333344444333211 115666
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhcccc
Q 007201 203 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQ 282 (613)
Q Consensus 203 ~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (613)
++..+...++|..++|.+++++.+ .+|+..|++.++..++..+..+...++ ++....
T Consensus 140 ~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------ 196 (417)
T 2cfq_A 140 FGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT------------------ 196 (417)
T ss_dssp HHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc------------------
Confidence 777777889999999999999876 578988886655433222221111111 100000
Q ss_pred ccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHH
Q 007201 283 ISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCIL 362 (613)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 362 (613)
.++. + + ++ +.+.+++... +..++++...
T Consensus 197 ~~~~-------------~---~--~~---------------------------------~~~~~~~~~~-~~~~~~~~~~ 224 (417)
T 2cfq_A 197 VANA-------------V---G--AN---------------------------------HSAFSLKLAL-ELFRQPKLWF 224 (417)
T ss_dssp SSSS-------------S---S--SC---------------------------------CCCCCHHHHH-HHTTCHHHHH
T ss_pred cccc-------------c---c--cc---------------------------------cccccHHHHH-HHhcCCchhh
Confidence 0000 0 0 00 0000000000 0011122111
Q ss_pred HHHHHHHHhHHHhhhhhcccceeeeehhhcccCcccccc-CccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCC
Q 007201 363 RLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHI-PPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGF 441 (613)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~ 441 (613)
..+..+.....+.....+.+.++.. ..... +.+. ..+....++.+..++...+.+++ .||+++|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~g~l----~dr~g~~~----- 290 (417)
T 2cfq_A 225 LSLYVIGVSCTYDVFDQQFANFFTS---FFATG--EQGTRVFGYVTTMGELLNASIMFFAPLI----INRIGGKN----- 290 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---TSSSH--HHHTHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHhcc--CCChhHHHHHHHHHHHHHHHHHHHHHHH----HHHhcHHH-----
Confidence 1111111122222221222211110 01100 0000 11233344444455555555655 55654432
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchh
Q 007201 442 TELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGL 521 (613)
Q Consensus 442 ~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~ 521 (613)
.+..+.++.+++++.+.+. .+.+.++...++.+++.....+..+.++.+..|++.
T Consensus 291 ----~l~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 345 (417)
T 2cfq_A 291 ----ALLLAGTIMSVRIIGSSFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF 345 (417)
T ss_dssp ----HHHHHHHHHHHHHHHHTTC---------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 4556666666665554321 123344444555666666666667889999999999
Q ss_pred HHHHHHH-HHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007201 522 KSFGSAL-CMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWY 591 (613)
Q Consensus 522 rg~~~g~-~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~ 591 (613)
||+++++ ++..+++|+.++|.+.+.+.+. .++...|.+.++++++++++.++..++.
T Consensus 346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 346 SATIYLVCFCFFKQLAMIFMSVLAGNMYES-------------IGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-------------SHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-------------cCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 9999999 4888899999999998866532 1355678888888888777766555543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=148.35 Aligned_cols=179 Identities=17% Similarity=0.101 Sum_probs=150.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcc--CchHHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYW--GRYKTCAIFQAI 122 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~--Grr~~i~~~~~l 122 (613)
.|.++.+++..++....++++..+++.|+++.+|+++.+++.+.+...++..++.++.|+++|| + |||+.+..+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 4677888888888889999999999999998899999999999999999999999999999999 7 999988887766
Q ss_pred HH-HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 123 FV-IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 123 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
.. ++.+++.+. +. .+.+.+.+..++.|++.+...+...+++.|.+|++. |++
T Consensus 330 ~~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 382 (451)
T 1pw4_A 330 LVTIATIVYWMN---PA------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT 382 (451)
T ss_dssp HHHHHHHHTTSC---CT------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHH
T ss_pred HHHHHHHHHHHh---cc------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhh
Confidence 65 454444332 11 235666777778888888888888999999999988 999
Q ss_pred HHHHHHHHHhH-HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHc
Q 007201 202 FFSYFYLALNL-GSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 202 ~~~~~~~~~~i-G~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
++++++...++ |..++|.+.|++.+..||+..|++.+++.+++.+..+..
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999998899999988887776666555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-12 Score=137.23 Aligned_cols=168 Identities=14% Similarity=0.062 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLF-LTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~y-l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
|.++..++..++.....+++..+++.| +++.+|.+..+++...+...++..++.+++|+++||+ |||+++..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 556667777777778888889999999 8888899999999999999999999999999999996 99999999988887
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
++.+++.+. +. .. .+...++.+++.+...+...++..|.+|++ ++.+.+
T Consensus 337 ~~~~~~~~~---~~--------------------~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 385 (438)
T 3o7q_A 337 ALCLISAFA---GG--------------------HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSS 385 (438)
T ss_dssp HHHHHHHHC---CH--------------------HH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHH
T ss_pred HHHHHHHHc---CC--------------------cH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhh
Confidence 777766654 11 22 233446778888888999999999998844 556666
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHH
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGM-WALGFWASAGSATMALI 246 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~ 246 (613)
+.. ...+|+.++|.+.|++.+..| ++..|++.+++.++..+
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 655 567999999999999999888 99888876655444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-12 Score=136.46 Aligned_cols=178 Identities=7% Similarity=-0.008 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQ---NNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAI 122 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~---~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l 122 (613)
|.++...+..+.....++....++|.|+++.++. +....+...++..++..++.+++|+++||+ |||+++..+.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 4444444444444455556667788898766553 234456666677778888999999999996 999999988877
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
..++.+.+.+. + +.+.+++..++.+++.+...+....+.+|.+|++. |+++
T Consensus 299 ~~~~~~~~~~~---~--------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~ 349 (417)
T 2cfq_A 299 MSVRIIGSSFA---T--------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATI 349 (417)
T ss_dssp HHHHHHHHTTC---C--------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHH
T ss_pred HHHHHHHHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHH
Confidence 77765555443 1 24445555666666666666777889999999988 9999
Q ss_pred HHH-HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCC
Q 007201 203 FSY-FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTP 253 (613)
Q Consensus 203 ~~~-~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 253 (613)
.++ ++.+.++|+.++|.++|++.+..|++..|.+.+++.+++.+..+...+
T Consensus 350 ~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 350 YLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 998 577888999999999999988788888888877776666655444333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=126.77 Aligned_cols=185 Identities=11% Similarity=0.043 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH-----HHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCA-----IFQAI 122 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~-----~~~~l 122 (613)
.+.+++..+.....++....+++.|+.+..+.+..+.+.......+...++.++.|+++||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44455555555666666777888999988888877888888888999999999999999996 9986554 56555
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
..++.+++........ .....+.+.+++..++.+++.+...+...+++.|.+|++. |+++
T Consensus 364 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~ 423 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQM 423 (491)
T ss_dssp HHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSS
T ss_pred HHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHH
Confidence 5555555444310000 0011235667777788899999989999999999999999 9999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCc
Q 007201 203 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPR 254 (613)
Q Consensus 203 ~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~ 254 (613)
.++++...++|..++|.+.+++.+ .++...|.+.+...+++.+..+...++
T Consensus 424 ~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 424 MSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp THHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876 466667777666666555555554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=7.5e-10 Score=120.29 Aligned_cols=186 Identities=13% Similarity=0.087 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+..++.....++..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 3344444444444444333344444556667888888888888888899999999999999996 999999999888777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHh-ccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALG-NGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g-~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
+.+.+........ .....++..++...+ .....+..+.+.+|.||++. |+++.+
T Consensus 355 ~~~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~------R~~~~g 409 (491)
T 4gc0_A 355 GMFSLGTAFYTQA-------------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALA 409 (491)
T ss_dssp HHHHHHHHHHTTC-------------------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT------HHHHHH
T ss_pred HHHHHHHHHhccc-------------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH------HHHHHH
Confidence 7766654421111 112222222222222 22345677889999999999 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccc------cchhHHHHHHHHHHHHHHHHHHHcCCcccc
Q 007201 205 YFYLALNLGSLFSNTILGYFEDE------GMWALGFWASAGSATMALILFLIGTPRYRH 257 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~------~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~ 257 (613)
+.+...++|+.+++.+.+.+.+. .++...|++.+++.+++.+..++..|+.++
T Consensus 410 ~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 410 IAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 99999999999998887766432 345556777776666676666666666543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.4e-10 Score=115.54 Aligned_cols=164 Identities=10% Similarity=-0.020 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH-HH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAI-FV 124 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l-~~ 124 (613)
|.++...+..++.....+.+..++|.|+++.+|.++.+++.+.+...++..++.++.|+++||+ |++ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 5677777777888888888999999999988999999999999999999999999999999996 872 2223222 22
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
.+...+..... + ..+.+.+++..++.+++.+...+...++..|.+| ++ |+++.+
T Consensus 276 ~~~~~~~~~~~-~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g 329 (375)
T 2gfp_A 276 AGLLMWIPDWF-G------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGA 329 (375)
T ss_dssp TSSSSSHHHHH-H------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHH
T ss_pred HHHHHHHHhhh-c------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHH
Confidence 22221111100 0 0135556677778889999999999999999998 66 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccchhHHHHHHH
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGMWALGFWASA 238 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~ 238 (613)
+.+...++|..++|.+.+.+.+..+|...+.+.+
T Consensus 330 ~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 330 LVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999999887777777666543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.04 E-value=6.4e-06 Score=89.97 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=96.6
Q ss_pred cccccchhHHHHHHHHhhhhhHHHhhhhh-ccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCC
Q 007201 404 ASMSSFDILSVAAFIFIYRRVLDPLVERL-TRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESK 482 (613)
Q Consensus 404 ~~~~~~~~v~~~~~~~l~~~l~~~l~~r~-~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (613)
+++.....+..++..++.+++ .+|+ +||+ .+.++.++.+++.+++.+.
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l----~dr~~g~r~---------~~~~~~~~~~~~~~~~~~~------------------ 105 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWI----ADRFFGKYN---------TILWLSLIYCVGHAFLAIF------------------ 105 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHH----HTTSSCSHH---------HHHHHHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhcchH---------HHHHHHHHHHHHHHHHHHh------------------
Confidence 444555566666677777766 5666 6543 5667777777777666543
Q ss_pred CccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHH---HHHHHhHHHHHHHHHHHHHhhhcCCCCCCCC
Q 007201 483 ASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSAL---CMTSISLGNYVSSLLVTIVMKISTRPGWIPG 559 (613)
Q Consensus 483 ~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~---~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~ 559 (613)
. .+.+.++...++.|++.+...|...+++.+.+|++.|+...++ .+....+|..+++.+.+.+.+..
T Consensus 106 ~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------- 175 (524)
T 2xut_A 106 E--HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-------- 175 (524)
T ss_dssp S--SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--------
T ss_pred c--ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 1 1445667778889999999999999999999999999876666 88888899999988877654311
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHH
Q 007201 560 NLNKGHLDRFYFLLAALTTADLFIYII 586 (613)
Q Consensus 560 ~~~~~~~~~~f~~~a~~~~~~~~~~~~ 586 (613)
+....|++.+++.+++++.+++
T Consensus 176 -----g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 176 -----GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHS
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHH
Confidence 2456777777776666555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 613 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.93 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.43 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.34 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.9e-24 Score=229.22 Aligned_cols=160 Identities=11% Similarity=0.063 Sum_probs=133.2
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCC
Q 007201 67 VNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGD 146 (613)
Q Consensus 67 ~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (613)
+.+..+++ ++|+++++.+++.+++.++..++++++|+++||+ |||+++.++.++..++.++++++....
T Consensus 45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~--------- 113 (447)
T d1pw4a_ 45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT--------- 113 (447)
T ss_dssp HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH---------
T ss_pred HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh---------
Confidence 34445665 5899999999999999999999999999999996 999999999999998888887752211
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhcc
Q 007201 147 EGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFED 226 (613)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~ 226 (613)
.+.+.+++.|++.|++.|...+....+++|++|+++ |++++++.+.+.++|..++|.+++.+..
T Consensus 114 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 177 (447)
T d1pw4a_ 114 ----------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMA 177 (447)
T ss_dssp ----------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred ----------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhh
Confidence 135678899999999999999999999999999998 9999999999999999999998887655
Q ss_pred c-cchhHHHHHHHHHHHHHHHHHHHcCC
Q 007201 227 E-GMWALGFWASAGSATMALILFLIGTP 253 (613)
Q Consensus 227 ~-~g~~~~f~~~~~~~~i~~~~~~~~~~ 253 (613)
. .+|+..|++.+...++..+..+...+
T Consensus 178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 178 WFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 4 47898888877666555555544443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=6e-23 Score=212.90 Aligned_cols=398 Identities=12% Similarity=0.046 Sum_probs=229.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|++|.+.+..++..+....+.+.++.|+++++|+|+++.|++.+++.++..+++++.|+++||+ ||||+++++..+..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 7788888888888888888889999999999999999999999999999999999999999996 999999999888887
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSY 205 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~ 205 (613)
+..++.+....+. .....+..+.+.+.+.+...........+..+++. +.+....+.
T Consensus 86 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 142 (417)
T d1pv7a_ 86 MFAPFFIFIFGPL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGR 142 (417)
T ss_dssp THHHHHHHTHHHH-------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHSCCHHH
T ss_pred HHHHHHHhhhhhh-------------------HHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhHHHHHH
Confidence 7777666521111 11112233333333333333333333333322221 114455666
Q ss_pred HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccC
Q 007201 206 FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISD 285 (613)
Q Consensus 206 ~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (613)
.......+..++|.+++++.+. +|+..+........+..+...+..++.+..++..+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 201 (417)
T d1pv7a_ 143 ARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV-------------------- 201 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH--------------------
T ss_pred Hhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhh--------------------
Confidence 7778888899999999988764 4544555444444444444443333221111110000
Q ss_pred CcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHHH
Q 007201 286 DDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCILRLL 365 (613)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 365 (613)
+.. + +.....+.... . .....+.......
T Consensus 202 --------~~~-----------~----~~~~~~~~~~~---~-------------------------~~~~~~~~~~~~~ 230 (417)
T d1pv7a_ 202 --------GAN-----------H----SAFSLKLALEL---F-------------------------RQPKLWFLSLYVI 230 (417)
T ss_dssp --------HSC-----------C----CCCCHHHHHHH---T-------------------------TSSHHHHHHHHHH
T ss_pred --------hhh-----------c----ccccccccccc---c-------------------------ccccccchhhhhH
Confidence 000 0 00000000000 0 0000011111111
Q ss_pred HHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhH
Q 007201 366 PIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQ 445 (613)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~ 445 (613)
........+............. ..... ............+...+...+.+++ .+|.++ .+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l----~~r~~~---------~~ 290 (417)
T d1pv7a_ 231 GVSCTYDVFDQQFANFFTSFFA-TGEQG------TRVFGYVTTMGELLNASIMFFAPLI----INRIGG---------KN 290 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSS-CHHHH------HHHHHHHHHHHHHHHHHHHTTHHHH----HHHHCH---------HH
T ss_pred HHHHHHHhhhcccccccccccc-ccccc------hhhhcccccccccccccchhhhhhh----hccccc---------cc
Confidence 1111111111111100000000 00000 0011122222333334444444443 556543 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHH
Q 007201 446 RMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFG 525 (613)
Q Consensus 446 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~ 525 (613)
.+.++.++.+++++.+.+. .+.+..+...++.+++.+...+...+++.+.+|++.||++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (417)
T d1pv7a_ 291 ALLLAGTIMSVRIIGSSFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATI 349 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH
T ss_pred chhhhHHHHHHhhhccccc---------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHH
Confidence 6677777777777666532 2445667777888999999999999999999999999999
Q ss_pred HHHH-HHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 007201 526 SALC-MTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKY 593 (613)
Q Consensus 526 ~g~~-~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~ 593 (613)
+|+. ++...+|..+++.+.+.+.+.. +++..|++.++++++..++.++..++.+.
T Consensus 350 ~~~~~~~~~~~g~~i~~~~~G~l~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 350 YLVCFCFFKQLAMIFMSVLAGNMYESI-------------GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHH-------------CHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------CHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 9985 5677899999999998776532 34667888888888877777666665433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=7.5e-13 Score=138.72 Aligned_cols=182 Identities=16% Similarity=0.050 Sum_probs=140.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007201 44 TWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIF 123 (613)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~ 123 (613)
..+.++.+....++.....+++..+.+.|+.+.++.+..+.+.......+...++.+++|+++||+ +|++.........
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 325 (447)
T d1pw4a_ 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFM 325 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHH
T ss_pred cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhH
Confidence 346777888888888889999999999999999999999999999999999999999999999996 8876554444333
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHH
Q 007201 124 VIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFF 203 (613)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~ 203 (613)
.+...........+ ..+.+..++..++.|++.++..+....+..|.+|++. |+++.
T Consensus 326 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~ 381 (447)
T d1pw4a_ 326 TLVTIATIVYWMNP------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAA 381 (447)
T ss_dssp HHHHHHHHHTTSCC------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHH
T ss_pred HHHHHHHHHHHhcc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence 33222222221101 1345666677777888888888888999999999988 99999
Q ss_pred HHHHHHHhH-HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 007201 204 SYFYLALNL-GSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLI 250 (613)
Q Consensus 204 ~~~~~~~~i-G~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 250 (613)
++.+...++ |..++|.+.|++.+.+||+..|++.+.+.+++.++...
T Consensus 382 g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 382 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 998888877 45678999999999999998888777665555544433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=8e-13 Score=135.41 Aligned_cols=145 Identities=8% Similarity=-0.007 Sum_probs=119.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCch
Q 007201 78 GQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSL 157 (613)
Q Consensus 78 g~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (613)
+.+....+.......++..++.++.|++.||+ |||+++.++.++..++.+.+.+. +
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~---~-------------------- 310 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA---T-------------------- 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC---C--------------------
T ss_pred ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc---c--------------------
Confidence 34455566777778888899999999999996 99999999998888887777765 2
Q ss_pred hHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHH-HHHHhHHHHHHHHHHHHhccccchhHHHHH
Q 007201 158 HMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYF-YLALNLGSLFSNTILGYFEDEGMWALGFWA 236 (613)
Q Consensus 158 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~-~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~ 236 (613)
+.+.+++..++.+++.+...+...+++.|.+|++. |++..++. .....+|..++|.+.|++.+..|++..|++
T Consensus 311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~ 384 (417)
T d1pv7a_ 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV 384 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 36667778888899999999999999999999998 99999984 556789999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHcC
Q 007201 237 SAGSATMALILFLIGT 252 (613)
Q Consensus 237 ~~~~~~i~~~~~~~~~ 252 (613)
.+++.++..++..+..
T Consensus 385 ~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 385 LGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8776666555554443
|