Citrus Sinensis ID: 007262
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 611 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M817 | 607 | Probable peptide transpor | yes | no | 0.963 | 0.970 | 0.644 | 0.0 | |
| Q8LPL2 | 591 | Probable peptide/nitrate | no | no | 0.949 | 0.981 | 0.643 | 0.0 | |
| Q8RX77 | 620 | Nitrate transporter 1.7 O | no | no | 0.877 | 0.864 | 0.391 | 1e-119 | |
| Q9LV10 | 616 | Probable peptide/nitrate | no | no | 0.932 | 0.925 | 0.370 | 1e-114 | |
| Q9SX20 | 596 | Probable nitrite transpor | no | no | 0.963 | 0.988 | 0.373 | 1e-112 | |
| Q9M9V7 | 587 | Probable peptide/nitrate | no | no | 0.901 | 0.938 | 0.379 | 1e-107 | |
| Q9LYD5 | 481 | Putative peptide/nitrate | no | no | 0.777 | 0.987 | 0.403 | 1e-106 | |
| Q944G5 | 636 | Probable peptide/nitrate | no | no | 0.890 | 0.855 | 0.374 | 1e-105 | |
| Q9LFX9 | 576 | Nitrate transporter 1.6 O | no | no | 0.893 | 0.947 | 0.365 | 1e-105 | |
| Q3E8X3 | 559 | Probable peptide/nitrate | no | no | 0.859 | 0.939 | 0.374 | 1e-101 |
| >sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/608 (64%), Positives = 486/608 (79%), Gaps = 19/608 (3%)
Query: 10 ETRQQEEAANNVQE---RRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGV 66
E E A +Q ++ KGG+ITMPFIIANEAFEKVASYGL+ NMI+YL++DY GV
Sbjct: 2 ENPPNETEAKQIQTNEGKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGV 61
Query: 67 AKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKP 126
AKGTNVLF W+AA+NF P+LGAFLSDSYLGRFLTI +AS S LGM LLWLTAM+P+VKP
Sbjct: 62 AKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKP 121
Query: 127 SPCNILT--QSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERV 184
SPC+ C S T +Q+ LL S+F ISIG+GGIRPCS+AFGADQLD K+NP NERV
Sbjct: 122 SPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERV 181
Query: 185 LESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKL 244
LESFFGWYYA+SA+AV+IA T IVYIQ+HLGWK+GFGVPA+LM+++ LLF +ASPLYV
Sbjct: 182 LESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTR 241
Query: 245 KASSSLLTGFAQVAVVAYKNRKLALPPPNASW-CYHRQKDSLLIVPTSKLRFLNKACLIR 303
+ SL TG AQ V AYK RKL+LP + S+ CY+ KDS + P+ KLRFLNKACLI
Sbjct: 242 GVTKSLFTGLAQAIVAAYKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLIS 301
Query: 304 NPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASSM 363
N E++I DG ALNPW LCT ++VEELKALIKV+P+WSTGIMMSIN SQ+SF LLQA+SM
Sbjct: 302 NREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSINTSQSSFQLLQATSM 361
Query: 364 DRHVT---SSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIG 420
DR ++ SSFQ+PAGSFG FTII LA WV+LYDR +IP+ASK++G+P RL VKLRMG+G
Sbjct: 362 DRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLG 421
Query: 421 LFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQ 480
LF+S + M +S +VE+ RR++AI +GY NN AV+++SAMWLVPQ+ L+GLAEA AI Q
Sbjct: 422 LFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQ 481
Query: 481 TEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRY 540
TEFFY+EFPKSMSSIAASLFGLGMAVA+LLAS +++AV+++TS+ GKESWVS NINKG Y
Sbjct: 482 TEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHY 541
Query: 541 DNYYWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGNDVKDEEEELLHLGNSRVGNE 600
+ YYW+LAIMS +N++Y+++CSW+YGP VD+V + N V+ EEEEL+ +
Sbjct: 542 NYYYWVLAIMSFINVIYYVICSWSYGPLVDQVRN--GRVNGVR-EEEELIDI-------V 591
Query: 601 GNGLKKEE 608
G G +KE+
Sbjct: 592 GKGFEKED 599
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/587 (64%), Positives = 464/587 (79%), Gaps = 7/587 (1%)
Query: 10 ETRQQEEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKG 69
+T +E + RR KGGL+TMPFIIANE FEKVASYGL+ NMILYLM DY LG+ KG
Sbjct: 7 QTESKETLQQPITRRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKG 66
Query: 70 TNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPC 129
VLF W AATNFMP++GAFLSDSYLGRFLTI +AS SLLGM +LWLTAM+P+VKPSPC
Sbjct: 67 QTVLFMWVAATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPC 126
Query: 130 -NILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188
+C S T++Q+ LL ++F ISIG+GGIRPCS+AFGADQLD K+NP NERVLESF
Sbjct: 127 VATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESF 186
Query: 189 FGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASS 248
FGWYYA+S++AV+IA T IVYIQDHLGWK+GFG+PAILM+L+ LF ASPLYVK S
Sbjct: 187 FGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSK 246
Query: 249 SLLTGFAQVAVVAYKNRKLALPPPNASW-CYHRQKDSLLIVPTSKLRFLNKACLIRNPEQ 307
SL TG AQV AY R L LP + S CY+R KDS L P+ KLRFLNKAC I N ++
Sbjct: 247 SLFTGLAQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNRDE 306
Query: 308 DIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASSMDRHV 367
D+ DG ALN W LCT +QVE+LKAL+KV+P+WSTGIMMSIN+SQNSF LLQA SMDR +
Sbjct: 307 DLGSDGLALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSMDRRL 366
Query: 368 TS--SFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSC 425
+S +FQIPAGSFG FTII L +WVVLYDR ++P+ASK++G+PVR+ VK+RMG+GLF+S
Sbjct: 367 SSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFISF 426
Query: 426 MGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFY 485
+ M VS VE+ RR+ AI +G N+ + + +SAMWLVPQ+ L+GLAEA I QTEFFY
Sbjct: 427 LAMAVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFFY 486
Query: 486 SEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYW 545
+EFPKSMSSIAASLFGLGMAVAN+LAS I++AV + +SK G SW+ NINKG YD YYW
Sbjct: 487 TEFPKSMSSIAASLFGLGMAVANILASVILNAVKN-SSKQGNVSWIEDNINKGHYDYYYW 545
Query: 546 LLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGNDVKDEEEELLHL 592
+LAI+S VN++Y++VCSW+YGP VD+V + D+ N ++ EEEE++ L
Sbjct: 546 VLAILSFVNVIYYVVCSWSYGPTVDQVRN--DKVNGMRKEEEEVIKL 590
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/549 (39%), Positives = 334/549 (60%), Gaps = 13/549 (2%)
Query: 24 RRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFM 83
++ GG + FI+ NE E++ S GL+ N ++YL K +HL NV+ W+ TN
Sbjct: 49 EKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTNLT 108
Query: 84 PILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQ-SCESPTTA 142
P++GA++SD+Y+GRF TI ASF +LLG+ + LTA P++ P+ CN SC P
Sbjct: 109 PLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPNKL 168
Query: 143 QMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVI 202
Q+ +L+ CF+S+G+GGIRPCSI FG DQ D++ + V SFF WYY T + ++I
Sbjct: 169 QIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGV-ASFFNWYYMTFTVVLII 227
Query: 203 ALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAY 262
T +VYIQD + W +GF +P LM L++++FF YV +K S+ +G AQV V A
Sbjct: 228 TQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAAR 287
Query: 263 KNRKLALPPPNASWCYHRQ---KDSLL--IVPTSKLRFLNKACLIRNPEQDIAPDGSALN 317
K RKL LP + + K S+L + +++ R L+KA ++ E D+ P+G +
Sbjct: 288 KKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVI--EGDLTPEGPPAD 345
Query: 318 PWSLCTIEQVEELKALIKVLPLWSTGIM-MSINISQNSFPLLQASSMDRHVTSSFQIPAG 376
W LC++++VEE+K LI+++P+WS GI+ ++ +Q +F + QA MDR++ F+IPAG
Sbjct: 346 KWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIPAG 405
Query: 377 SFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVEN 436
S +++T+ ++ YDRV +P ++ G + + R+G G+ + M+V+G+VE
Sbjct: 406 SLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIVER 465
Query: 437 IRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIA 496
+RR R+I G + + MS WL PQ L GL EAFN I Q EFF S+FP+ M SIA
Sbjct: 466 MRRIRSINAG---DPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRSIA 522
Query: 497 ASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLV 556
SLF L A ++ L+S +V+ V + + W++ N+N G+ D +Y+L+A++ +VNLV
Sbjct: 523 NSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAVLGVVNLV 582
Query: 557 YFLVCSWAY 565
YF C+ Y
Sbjct: 583 YFWYCARGY 591
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Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/588 (37%), Positives = 342/588 (58%), Gaps = 18/588 (3%)
Query: 15 EEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLF 74
EE N Q++ G MPFII NE FEK+ G ++N+++YL ++L ++
Sbjct: 33 EEDVQN-QKKVVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIIN 91
Query: 75 FWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQ 134
++ NF + AFL D+Y GR+ T+ +A LG F++ LTA +P++ P+ C
Sbjct: 92 AFSGTINFGTFVAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAAD 151
Query: 135 S-CESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYY 193
S C P+ Q+ L+ F+ +GAGGIRPC++AFGADQ + K + +R ++SFF WY+
Sbjct: 152 SICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSE-SGKRGIDSFFNWYF 210
Query: 194 ATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTG 253
T A +++LT +VY+Q ++ W +G +PA+LM L+ L+FF LYVK+KAS S L G
Sbjct: 211 FTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAG 270
Query: 254 FAQVAVVAYKNRKLALPPPNASWC-----YHRQKDSLLIVPTSKLRFLNKACLIRNPEQD 308
AQV VA K R L P W Y + + + T + RFL+KA ++ PE
Sbjct: 271 IAQVIAVAIKKR--GLKPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAAIL-TPEDK 327
Query: 309 IAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQN-SFPLLQASSMDRHV 367
+ PDG +PW LCT++QVEE+K +++VLP+W + + I+Q ++P+ QA DR +
Sbjct: 328 LQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRL 387
Query: 368 TSS-FQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCM 426
S F IPA ++ F + + ++V+YDRVL+P ++ G + + R+G G+F +
Sbjct: 388 GSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATA 447
Query: 427 GMVVSGLVENIRRRRAIRE---GYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEF 483
+VV+G VE RR A+ + G + MSAMWL+PQ L G+AEAF AI Q EF
Sbjct: 448 SLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQMEF 507
Query: 484 FYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNY 543
+Y +FP++M S A S+F +G V++ L S +++ V T +W++ ++NKGR D +
Sbjct: 508 YYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRLDLF 567
Query: 544 YWLLAIMSLVNLVYFLVCS--WAYGPCVDRVTSVGDEGNDVKDEEEEL 589
Y+++A + VN YFLV S + Y D VT+ N +K +++ +
Sbjct: 568 YFMIAGILAVNFAYFLVMSRWYRYKGSDDEVTTYETNENIIKQQDKNV 615
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 227/607 (37%), Positives = 356/607 (58%), Gaps = 18/607 (2%)
Query: 1 MEEAISDQRETRQQEEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMK 60
MEE + +EE + + R KGGLITMPFI ANE EK+A G NMI YL
Sbjct: 1 MEE---QSKNKISEEEKQLHGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTT 57
Query: 61 DYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAM 120
HL + K N L + ++ P+LGAF++DS+ GRF TI AS +GM LL ++A+
Sbjct: 58 QLHLPLTKAANTLTNFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAI 117
Query: 121 IPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPN 180
IP ++P PC + C TAQ+++L + ++G+GGIRPC +AFGADQ D D PN
Sbjct: 118 IPTLRPPPCK-GEEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESD-PN 175
Query: 181 NERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPL 240
++F WYY AV++A+T +V+IQD++GW +G G+P + M LS++ F L
Sbjct: 176 QTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQL 235
Query: 241 YVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLL-----IVPTSKLRF 295
Y L + S T QV V A++ RKL + + ++ + D+ + + T + F
Sbjct: 236 YRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSF 295
Query: 296 LNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMM-SINISQNS 354
L+KA ++ E+D G N W L T+ +VEELK++I++ P+ ++GI++ + Q +
Sbjct: 296 LDKAAIVT--EEDNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGT 353
Query: 355 FPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVK 414
F L QA +M+RH+T+SFQIPAGS FT + + ++ YDRV + VA K G +
Sbjct: 354 FSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFL 413
Query: 415 LRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEA 474
RMGIG +S + +V+G VE R+ AI G L+ ++ +S +WL+PQ+ L+G+AEA
Sbjct: 414 HRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEA 473
Query: 475 FNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWV-SS 533
F +I EFFY + P+SM S A +LF + +++ N +++ +V+ V ++K +W+ +
Sbjct: 474 FMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDN 533
Query: 534 NINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGNDVKDEEEELLHLG 593
N+N+GR + +YWL+ ++ VNLVY+L C+ Y +V ++ + VK+E L L
Sbjct: 534 NLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYKPVQVHHSKEDSSPVKEE----LQLS 589
Query: 594 NSRVGNE 600
N + +E
Sbjct: 590 NRSLVDE 596
|
May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/562 (37%), Positives = 327/562 (58%), Gaps = 11/562 (1%)
Query: 12 RQQEEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTN 71
+ ++ A + + + G MPFII NE FEK+ G +N+++YL +++
Sbjct: 5 KTEKNIAEDDESKIIYRGWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAK 64
Query: 72 VLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPC-N 130
V+ + +NF I+ AFL DSY GR+ T+ A LG + LTA+I + P+ C
Sbjct: 65 VVNIYGGTSNFGTIVAAFLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAK 124
Query: 131 ILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFG 190
+ C P+ Q+ L + + IGAGGIRPC++ FGADQ D K +R +ESFF
Sbjct: 125 EIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGADQFDPKTK-EGKRGIESFFN 183
Query: 191 WYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSL 250
WY+ T A +++LT IVY+Q ++ W +G +PAILM+L ++FF S LYVK+KAS S
Sbjct: 184 WYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSP 243
Query: 251 LTGFAQVAVVAYKNRKLALPPPNASWCYHRQ--KDSLLIVPTSKLRFLNKACLIRNPEQD 308
+ +V VVA K R+L PN + Y K+S L T + RFL+K+ I+ +
Sbjct: 244 IHSITRVIVVAIKKRRLKPVGPNELYNYIASDFKNSKL-GHTEQFRFLDKSA-IQTQDDK 301
Query: 309 IAPDGSALNPWSLCTIEQVEELKALIKVLPLW-STGIMMSINISQNSFPLLQASSMDRHV 367
+ DGS ++ W LC+++QVEE+K +I+VLP+W S + I Q ++ + Q+ DR +
Sbjct: 302 LNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRL 361
Query: 368 -TSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCM 426
SFQIPAGS+ F ++ + ++ +YDRVL+P K G+ + R+G GLFL
Sbjct: 362 GPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCIT 421
Query: 427 GMVVSGLVENIRRRRAIRE---GYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEF 483
M+VS +VE RR+ A+ + G A+ MS MWL+PQ L G+A+A + Q EF
Sbjct: 422 SMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEF 481
Query: 484 FYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNY 543
+Y +FP++M S A SL+ G+ +A+ L++ ++SAV D T SW+ ++NKGR + +
Sbjct: 482 YYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRLEYF 541
Query: 544 YWLLAIMSLVNLVYFLVCSWAY 565
Y+L+A M +NL YFL+ S Y
Sbjct: 542 YFLVAGMMTLNLAYFLLVSHWY 563
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYD5|PTR48_ARATH Putative peptide/nitrate transporter At5g11570 OS=Arabidopsis thaliana GN=At5g11570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 318/557 (57%), Gaps = 82/557 (14%)
Query: 15 EEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLF 74
++ A V K G+ T+PFI+A++A EK+A +GLV NMIL+L +Y +G A+ N+LF
Sbjct: 2 DQEALLVGRTLLKRGIPTIPFILASQALEKLAYFGLVPNMILFLTVEYGMGTAEAANILF 61
Query: 75 FWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQ 134
W+AATNF P++GAF++DSY GRF IG S SL GM LLWLT +I +P C+ LT
Sbjct: 62 LWSAATNFFPLVGAFIADSYTGRFPLIGFGSSISLTGMVLLWLTTII---RPE-CDKLTN 117
Query: 135 SCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPN-NERVLESFFGWYY 193
C+ T + LL S F +IGAGG+R +AF ADQL LE+ F WYY
Sbjct: 118 VCQPTTLLKSVLLYSFFALTAIGAGGVRSSCLAFAADQLQPNQTSRVTTSSLETLFNWYY 177
Query: 194 ATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTG 253
+ +A ++ + +V++Q GW++GFGV M LS+ LFF ASP YV+ +
Sbjct: 178 FSVMVACFLSQSLLVFVQTTYGWQIGFGVSVAAMALSVALFFAASPYYVRFQK------- 230
Query: 254 FAQVAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDG 313
P N+ RNP
Sbjct: 231 ----------------PTRNS----------------------------RNP-------- 238
Query: 314 SALNPWSLCTIEQVEELKALIKVLPLWSTGIMMS-INISQNSFPLLQASSMDRHV-TSSF 371
W LC ++QVE+LK+LI V+P+WSTGI++S + Q SF +LQA +MDRH F
Sbjct: 239 -----WKLCRVQQVEDLKSLINVIPIWSTGIILSLVTACQVSFIVLQAKTMDRHTFIQGF 293
Query: 372 QIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVS 431
+IP GS+G F +I+ ++ LYD V++P+ S +P RLGV +RM G +S + +
Sbjct: 294 EIPPGSYGIFLVISFLLFLGLYDLVIVPLLSWALREPFRLGVMVRMWAGYVISVLCISAL 353
Query: 432 GLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKS 491
E RR+ A E +G ++SAMWL+P L G+AEA N IAQ EFFYSE PK+
Sbjct: 354 AATEYARRKTARDE----SGT---KLSAMWLLPYMILGGIAEALNTIAQNEFFYSELPKT 406
Query: 492 MSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMS 551
MSS+A +L L MA A+L++S I++ V D+T+ G SW++ NI++G D YYWLL +S
Sbjct: 407 MSSVATTLSSLNMAAASLISSWIITIV-DVTTYG---SWITENIDEGHLDYYYWLLVGLS 462
Query: 552 LVNLVYFLVCSWAYGPC 568
L+N++YF+ C +YG C
Sbjct: 463 LLNVLYFVWCKKSYGKC 479
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 211/564 (37%), Positives = 332/564 (58%), Gaps = 20/564 (3%)
Query: 16 EAANNVQERRRK---GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNV 72
+ ++ +E +RK G MPFII NE FEK+ G ++N+++YL ++L +
Sbjct: 48 DVVDSFEEEQRKIVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTSVFNLKSYTAATI 107
Query: 73 LFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNIL 132
+ ++ NF + AFL D+Y GR+ T+ +A LG F++ LTA IP + P C
Sbjct: 108 INAFSGTINFGTFIAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAIPSLHPVACGNK 167
Query: 133 TQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192
SCE P+ Q+ L+ F+ +GAGGIRPC++AFGADQ + K + ++ + SFF WY
Sbjct: 168 I-SCEGPSVGQILFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSE-SGKKGINSFFNWY 225
Query: 193 YATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLT 252
+ T A +I+LTA+VYIQ ++ W +G +P LM L+ ++FF LYVK+KAS S L
Sbjct: 226 FFTFTFAQIISLTAVVYIQSNVSWTIGLIIPVALMFLACVIFFAGDRLYVKVKASGSPLA 285
Query: 253 GFAQVAVVAYKNRKLALPPPNASWC--YHR---QKDSLLIVPTSKLRFLNKACLIRNPEQ 307
G A+V A K R L P W Y+ + + T + RFL+KA I PE+
Sbjct: 286 GIARVIAAAIKKR--GLKPVKQPWVNLYNHIPSNYANTTLKYTDQFRFLDKAA-IMTPEE 342
Query: 308 DIAPDGSALNPWSLCTIEQVEELKALIKVLPLW--STGIMMSINISQNSFPLLQASSMDR 365
+ DG+A +PW LCT++QVEE+K +++V+P+W ST ++I I Q ++P+ QA DR
Sbjct: 343 KLNSDGTASDPWKLCTLQQVEEVKCIVRVIPIWFASTIYYLAITI-QMTYPVFQALQSDR 401
Query: 366 HVTSS-FQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLS 424
+ S F+IPA ++ F + + +++ YDRVL+P ++ G + + R+G G +
Sbjct: 402 RLGSGGFRIPAATYVVFLMTGMTVFIIFYDRVLVPSLRRVTGLETGISLLQRIGAGFTFA 461
Query: 425 CMGMVVSGLVENIRRRRAIREGYLNNGQAVLE---MSAMWLVPQHCLNGLAEAFNAIAQT 481
M ++VSG +E RR A+ + L E MSA+WL+PQ L G+AEAF AI Q
Sbjct: 462 IMSLLVSGFIEERRRNFALTKPTLGMAPRTGEISSMSALWLIPQLTLAGIAEAFAAIGQM 521
Query: 482 EFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYD 541
EF+Y +FP++M S A S+F +G V++ LAS ++S V T+ +W++ ++NK + D
Sbjct: 522 EFYYKQFPENMKSFAGSIFYVGAGVSSYLASFLISTVHRTTAHSPSGNWLAEDLNKAKLD 581
Query: 542 NYYWLLAIMSLVNLVYFLVCSWAY 565
+Y++L + +VN+ YFL+ + Y
Sbjct: 582 YFYFMLTGLMVVNMAYFLLMARWY 605
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 211/577 (36%), Positives = 329/577 (57%), Gaps = 31/577 (5%)
Query: 19 NNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTA 78
+ ++ GG + FI+ NE EK+ S G+ N +LYL +H+ + NV + W
Sbjct: 7 RKILPEKKLGGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMG 66
Query: 79 ATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKV-KPSPCNILTQSCE 137
TNF P+LGA +SD+Y+GRF TI AS S+LG+ + LTA +P++ P N C+
Sbjct: 67 LTNFAPLLGALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCNNPHPDECD 126
Query: 138 SPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSA 197
P Q+ +L F+SIG+GGIRPCSI FG DQ D++ + V SFF WYY T
Sbjct: 127 DPNKLQLGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLKGV-ASFFNWYYLTLT 185
Query: 198 IAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQV 257
+ ++ + T +VY+Q + W +GF +P LM +++LFF+ YV +K S+ +G A+V
Sbjct: 186 MVLIFSHTVVVYLQT-VSWVIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFSGIARV 244
Query: 258 AVVAYKNRKLALP-PPNASWCYHR---QKDSLLIVP-TSKLRFLNKACLIRNPEQDIAPD 312
V A K R L + + + Y+ + L +P T + +FL+KA +I + D+ +
Sbjct: 245 IVAARKKRDLKISLVDDGTEEYYEPPVKPGVLSKLPLTDQFKFLDKAAVIL--DGDLTSE 302
Query: 313 GSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINI-SQNSFPLLQASSMDRHVTSSF 371
G N W LC+I++VEE+K LI+V+P+WS GI+ + + +Q +F + QA+ MDRH+ F
Sbjct: 303 GVPANKWRLCSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVFQATKMDRHMGPHF 362
Query: 372 QIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVS 431
+IPA S + IT+ WV +Y+ +L+P +M + R+ + RMGIG+ + + M +
Sbjct: 363 EIPAASITVISYITIGIWVPIYEHLLVPFLWRM--RKFRVTLLQRMGIGIVFAILSMFTA 420
Query: 432 GLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKS 491
G VE +RR RA + +MS WL L GL E+FN I EFF S+FP+
Sbjct: 421 GFVEGVRRTRATE---------MTQMSVFWLALPLILMGLCESFNFIGLIEFFNSQFPEH 471
Query: 492 MSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMS 551
M SIA SLF L A AN L+S +V+ V ++ W++ ++++G+ D +Y+L+A++
Sbjct: 472 MRSIANSLFPLSFAAANYLSSLLVTTVHKVSGTKDHPDWLNKDLDRGKLDYFYYLIAVLG 531
Query: 552 LVNLVYFLVCSWAYGPCVDRVTSVGDEGNDVKDEEEE 588
+VNLVYF C+ Y G+ ++D EE
Sbjct: 532 VVNLVYFWYCAHRYQ---------YKAGSQIEDFNEE 559
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E8X3|PTR52_ARATH Probable peptide/nitrate transporter At5g28470 OS=Arabidopsis thaliana GN=At5g28470 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/540 (37%), Positives = 316/540 (58%), Gaps = 15/540 (2%)
Query: 24 RRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFM 83
++ KGG + +IIANE+FEK+AS L+ N+ +YLM Y+LG NV+ W + N +
Sbjct: 15 KKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVFLVNVINIWFGSCNIL 74
Query: 84 PILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQ 143
+ GAF+SD+YLGRF T+ L S S +GM + LTA +P ++P C + P Q
Sbjct: 75 TLAGAFVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDACIDPSNCSNQPAKWQ 134
Query: 144 MTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIA 203
+ +L S ++IGAGG+RPC+IAFGADQ D LE+FF W+Y + +A+VIA
Sbjct: 135 LGVLFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAH-LETFFNWWYFSFTVALVIA 193
Query: 204 LTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYK 263
LT +VYIQ ++ W +GF +P + LS+ F I Y+ KA S+ +V A K
Sbjct: 194 LTGVVYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGSVFADIVKVVTAACK 253
Query: 264 NRKLALPPPNASWCYHRQKD---SLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWS 320
RK+ P + ++ D + L+ +LRF +KA ++ NP ++ DG+A W
Sbjct: 254 KRKVK-PGSDITFYIGPSNDGSPTTLVRDKHRLRFFDKASIVTNP-NELNEDGNAKYKWR 311
Query: 321 LCTIEQVEELKALIKVLPLWSTGIMMSI-NISQNSFPLLQASSMDRHV-TSSFQIPAGSF 378
LC+++QV+ LK + +LP+W TGI I QN + +LQA MD+ +FQ+PAG
Sbjct: 312 LCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQMDKTFGPHNFQVPAGWM 371
Query: 379 GTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIR 438
++ITLA W+ LY+ V+IP+ ++ G+ RL +K R+ I + + C M+V+G E R
Sbjct: 372 NLVSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIEIVMGIIC--MIVAGFQEKKR 429
Query: 439 RRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAAS 498
R A L NG V +S + L+PQ L GL EAF+A+A EF P+ M ++A +
Sbjct: 430 RASA-----LKNGSFVSPVSIVMLLPQFALAGLTEAFSAVALMEFLTVRMPEHMRAVAGA 484
Query: 499 LFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYF 558
+F L ++A+ + + +++ +D +T K GK ++NK R +NY++++A + + NL+YF
Sbjct: 485 IFFLSSSIASYICTLLINVIDAVTRKEGKSWLGDKDLNKNRLENYFFIIAGIQVANLLYF 544
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 611 | ||||||
| 255549914 | 612 | nitrate transporter, putative [Ricinus c | 0.981 | 0.980 | 0.710 | 0.0 | |
| 297743243 | 622 | unnamed protein product [Vitis vinifera] | 0.977 | 0.959 | 0.701 | 0.0 | |
| 225442569 | 584 | PREDICTED: probable peptide transporter | 0.936 | 0.979 | 0.731 | 0.0 | |
| 449448172 | 608 | PREDICTED: probable peptide transporter | 0.975 | 0.980 | 0.649 | 0.0 | |
| 15218183 | 607 | putative peptide transporter [Arabidopsi | 0.963 | 0.970 | 0.644 | 0.0 | |
| 297847594 | 607 | proton-dependent oligopeptide transport | 0.963 | 0.970 | 0.639 | 0.0 | |
| 224059108 | 479 | predicted protein [Populus trichocarpa] | 0.764 | 0.974 | 0.798 | 0.0 | |
| 15233307 | 591 | major facilitator protein [Arabidopsis t | 0.949 | 0.981 | 0.643 | 0.0 | |
| 297834490 | 593 | proton-dependent oligopeptide transport | 0.952 | 0.981 | 0.647 | 0.0 | |
| 20466248 | 579 | putative transport protein [Arabidopsis | 0.919 | 0.970 | 0.654 | 0.0 |
| >gi|255549914|ref|XP_002516008.1| nitrate transporter, putative [Ricinus communis] gi|223544913|gb|EEF46428.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/612 (71%), Positives = 510/612 (83%), Gaps = 12/612 (1%)
Query: 1 MEEAISDQRE----TRQQEEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMIL 56
MEEA Q E T QQ + RKGGLITMPFIIANEAFEKV+SYGL+ NMI
Sbjct: 5 MEEAALAQTEVMASTHQQH------TPKSRKGGLITMPFIIANEAFEKVSSYGLLPNMIF 58
Query: 57 YLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLW 116
YLMKDY LGVAKG N++F W AATNFMP+LGAF+SDSYLGR+LTIGL S SLLG LLW
Sbjct: 59 YLMKDYGLGVAKGANIIFLWNAATNFMPLLGAFISDSYLGRYLTIGLGSIFSLLGTVLLW 118
Query: 117 LTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRK 176
LT MIP+ KP C+++TQ+C+SPT Q+T+L+SS FISIGAGGIRPCS+AFGADQLD K
Sbjct: 119 LTTMIPQSKPPLCDLMTQNCKSPTAGQITMLLSSMAFISIGAGGIRPCSLAFGADQLDNK 178
Query: 177 DNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFI 236
NP NER+LES+FGWYYA++AI+V+IALT IVYIQDH GW+VGFGVPAIL+ LS LFFI
Sbjct: 179 SNPKNERILESYFGWYYASTAISVLIALTGIVYIQDHHGWRVGFGVPAILVFLSAFLFFI 238
Query: 237 ASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFL 296
ASPLY+K KAS SLL GFAQV VVAYKNRK+ PP N+ YHR+K+S I PT +RFL
Sbjct: 239 ASPLYLKQKASKSLLAGFAQVLVVAYKNRKIPFPPTNSDSKYHRRKNSEYITPTENIRFL 298
Query: 297 NKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFP 356
NKAC+IRN EQD+APDGSA NPWSLCTIEQVEELKALI+V+P+WSTGIMMSIN+SQ SF
Sbjct: 299 NKACIIRNAEQDLAPDGSASNPWSLCTIEQVEELKALIRVIPIWSTGIMMSINVSQGSFQ 358
Query: 357 LLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLR 416
+LQASSMDRH++S FQ+PAGSF TF +I++A W+VLYDR ++P+A+K+KGKPVRLGVKLR
Sbjct: 359 VLQASSMDRHLSSKFQVPAGSFATFVVISMAIWIVLYDRAILPLATKIKGKPVRLGVKLR 418
Query: 417 MGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFN 476
MGIGLFLSCMGMVV+G+VEN+RRR+AI EGYLNN AV++MSA WL PQ+CLNG AEA N
Sbjct: 419 MGIGLFLSCMGMVVAGIVENVRRRKAIHEGYLNNPNAVVQMSAFWLAPQYCLNGFAEALN 478
Query: 477 AIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNIN 536
AI QTEF+Y+EFPKSMSSIA +LFGLGMAVANLLA+ I+S V++ITSKGGK WV SNIN
Sbjct: 479 AIGQTEFYYTEFPKSMSSIAGALFGLGMAVANLLATVILSLVNNITSKGGKVGWVPSNIN 538
Query: 537 KGRYDNYYWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGNDVKDEEEELLHLGNSR 596
+G YDNYYWLLAIMS VNL+YFL+CSW YGPC +++T V DEGN K EEE +LG S
Sbjct: 539 QGHYDNYYWLLAIMSAVNLLYFLICSWGYGPCKEQITKVSDEGNGFKHEEEP-CNLG-SM 596
Query: 597 VGNEGNGLKKEE 608
+ +EG G+ EE
Sbjct: 597 IKDEGKGIDGEE 608
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743243|emb|CBI36110.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/624 (70%), Positives = 511/624 (81%), Gaps = 27/624 (4%)
Query: 3 EAISDQRETRQQEEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDY 62
EA S+QR+ Q R KGGLITMPFIIANEAFE+VASYGL+ NMILYL++DY
Sbjct: 4 EANSEQRKMSQ-----------RAKGGLITMPFIIANEAFERVASYGLLPNMILYLIQDY 52
Query: 63 HLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIP 122
HLGVAKGTN+LF W+AATNF+P++GAFLSDSYLGRFLTIGL S SLLGM LLWLTAMIP
Sbjct: 53 HLGVAKGTNILFLWSAATNFLPVVGAFLSDSYLGRFLTIGLGSITSLLGMILLWLTAMIP 112
Query: 123 KVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNE 182
K KP C++LTQSC++PT AQ LL SSF +SIGAGG+RPCS+AFGADQLD++DNP NE
Sbjct: 113 KTKPPHCDLLTQSCKAPTAAQFILLYSSFALMSIGAGGVRPCSLAFGADQLDKRDNPKNE 172
Query: 183 RVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYV 242
RVLESFF WYYA++A++VVIALT IVYIQ HLGW+VGFGVPAILM + LLFF+ASP Y+
Sbjct: 173 RVLESFFSWYYASAALSVVIALTGIVYIQVHLGWRVGFGVPAILMFFAALLFFLASPFYI 232
Query: 243 KLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLI 302
K KAS SLLTGF QV VVAYKNRKLA PP N YH KDS L+VPT +LRFLNKAC+I
Sbjct: 233 KQKASRSLLTGFVQVLVVAYKNRKLAFPPRNTDGWYHYSKDSKLVVPTDRLRFLNKACII 292
Query: 303 RNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASS 362
R+PE+DI DG A NPWSLCT++QVEELKALIKV+P+WSTGIMMSIN S +SFP+LQA+S
Sbjct: 293 RSPERDINSDGLASNPWSLCTVDQVEELKALIKVIPMWSTGIMMSINTSNSSFPVLQANS 352
Query: 363 MDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLF 422
MDRHV SSFQIPAGS+ F +I L WV LYDRV++P+ASK++GK VRLGVK RMGIGLF
Sbjct: 353 MDRHVFSSFQIPAGSYAMFLVIVLFLWVALYDRVILPLASKVRGKRVRLGVKQRMGIGLF 412
Query: 423 LSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTE 482
LSC+GMVV+ +VEN+RRR+AIR+G LNN Q ++ MSAMWLVPQ+CL GLAEAFNAI QTE
Sbjct: 413 LSCLGMVVAAIVENVRRRKAIRQGLLNNPQTLVGMSAMWLVPQYCLYGLAEAFNAIGQTE 472
Query: 483 FFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDN 542
F+YSEFPKSMSSIAA+LFGLGMAVANLLAS I+SAV+ +TS+GGKESWVS+NINKG YDN
Sbjct: 473 FYYSEFPKSMSSIAAALFGLGMAVANLLASVILSAVNHLTSRGGKESWVSNNINKGHYDN 532
Query: 543 YYWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGNDVKDEEEELLHLGN-------- 594
YYWLLAIMS +NL+Y+LVCS+ YGPCV++ T V DEG + + E EL L N
Sbjct: 533 YYWLLAIMSAINLLYYLVCSYFYGPCVEQGTKVSDEGKSM-EGENELSKLSNGARDEVES 591
Query: 595 -------SRVGNEGNGLKKEESFS 611
S+ +E GLK EE S
Sbjct: 592 LKDDEKLSKFKDEVEGLKDEEELS 615
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442569|ref|XP_002279092.1| PREDICTED: probable peptide transporter At1g52190-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/585 (73%), Positives = 498/585 (85%), Gaps = 13/585 (2%)
Query: 3 EAISDQRETRQQEEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDY 62
EA S+QR+ Q R KGGLITMPFIIANEAFE+VASYGL+ NMILYL++DY
Sbjct: 4 EANSEQRKMSQ-----------RAKGGLITMPFIIANEAFERVASYGLLPNMILYLIQDY 52
Query: 63 HLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIP 122
HLGVAKGTN+LF W+AATNF+P++GAFLSDSYLGRFLTIGL S SLLGM LLWLTAMIP
Sbjct: 53 HLGVAKGTNILFLWSAATNFLPVVGAFLSDSYLGRFLTIGLGSITSLLGMILLWLTAMIP 112
Query: 123 KVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNE 182
K KP C++LTQSC++PT AQ LL SSF +SIGAGG+RPCS+AFGADQLD++DNP NE
Sbjct: 113 KTKPPHCDLLTQSCKAPTAAQFILLYSSFALMSIGAGGVRPCSLAFGADQLDKRDNPKNE 172
Query: 183 RVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYV 242
RVLESFF WYYA++A++VVIALT IVYIQ HLGW+VGFGVPAILM + LLFF+ASP Y+
Sbjct: 173 RVLESFFSWYYASAALSVVIALTGIVYIQVHLGWRVGFGVPAILMFFAALLFFLASPFYI 232
Query: 243 KLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLI 302
K KAS SLLTGF QV VVAYKNRKLA PP N YH KDS L+VPT +LRFLNKAC+I
Sbjct: 233 KQKASRSLLTGFVQVLVVAYKNRKLAFPPRNTDGWYHYSKDSKLVVPTDRLRFLNKACII 292
Query: 303 RNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASS 362
R+PE+DI DG A NPWSLCT++QVEELKALIKV+P+WSTGIMMSIN S +SFP+LQA+S
Sbjct: 293 RSPERDINSDGLASNPWSLCTVDQVEELKALIKVIPMWSTGIMMSINTSNSSFPVLQANS 352
Query: 363 MDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLF 422
MDRHV SSFQIPAGS+ F +I L WV LYDRV++P+ASK++GK VRLGVK RMGIGLF
Sbjct: 353 MDRHVFSSFQIPAGSYAMFLVIVLFLWVALYDRVILPLASKVRGKRVRLGVKQRMGIGLF 412
Query: 423 LSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTE 482
LSC+GMVV+ +VEN+RRR+AIR+G LNN Q ++ MSAMWLVPQ+CL GLAEAFNAI QTE
Sbjct: 413 LSCLGMVVAAIVENVRRRKAIRQGLLNNPQTLVGMSAMWLVPQYCLYGLAEAFNAIGQTE 472
Query: 483 FFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDN 542
F+YSEFPKSMSSIAA+LFGLGMAVANLLAS I+SAV+ +TS+GGKESWVS+NINKG YDN
Sbjct: 473 FYYSEFPKSMSSIAAALFGLGMAVANLLASVILSAVNHLTSRGGKESWVSNNINKGHYDN 532
Query: 543 YYWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGNDVKDEEE 587
YYWLLAIMS +NL+Y+LVCS+ YGPCV++ T DE +KDEEE
Sbjct: 533 YYWLLAIMSAINLLYYLVCSYFYGPCVEQGTK--DEVEGLKDEEE 575
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448172|ref|XP_004141840.1| PREDICTED: probable peptide transporter At1g52190-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/605 (64%), Positives = 491/605 (81%), Gaps = 9/605 (1%)
Query: 7 DQRE--TRQQEEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHL 64
DQ+ T Q+EE + + +KGGL+TMPFII +E+ EKV SYGL+ NMILYLMKDY+L
Sbjct: 2 DQQNSATMQKEEEEEAISKSSKKGGLLTMPFIIDSESLEKVGSYGLMPNMILYLMKDYNL 61
Query: 65 GVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKV 124
G AKG N+LFFW+AA NFMP+LGAFL+DSYLGRFLTIG S + LGM LLWLTAM+P
Sbjct: 62 GFAKGNNILFFWSAAINFMPLLGAFLADSYLGRFLTIGFGSIATFLGMLLLWLTAMVPST 121
Query: 125 KPSPCNILT-QSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNER 183
KP C+ L ++C SPT AQM LL + +SIGAGG+RPC++AFGADQ+DR+DNPNN+R
Sbjct: 122 KPPACDQLHPETCRSPTAAQMALLAVALTLMSIGAGGVRPCTLAFGADQIDRRDNPNNKR 181
Query: 184 VLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVK 243
+LE FFGWYYA+++ +V+IALT IVYIQDH+GWKVGFGVPA LM+ + +LFF AS +YVK
Sbjct: 182 MLERFFGWYYASASFSVLIALTGIVYIQDHVGWKVGFGVPAGLMLFATVLFFAASSIYVK 241
Query: 244 LKASSSLLTGFAQVAVVAYKNRKLALP--PPNASWCYHRQKDSLLIVPTSKLRFLNKACL 301
KA+ SL + FAQV V A+KNRK LP P + W YH KDSL P+ KLRFLNKAC+
Sbjct: 242 QKATKSLFSSFAQVVVAAFKNRKFPLPTSPASTKWFYH--KDSLFTQPSDKLRFLNKACV 299
Query: 302 IRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQAS 361
++NPEQDIA DG+A +PWSLCT+EQVEELK LIKV+P+WSTG+MMSINISQ+SFPLLQA
Sbjct: 300 VKNPEQDIAGDGTAADPWSLCTVEQVEELKTLIKVIPIWSTGVMMSINISQSSFPLLQAK 359
Query: 362 SMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGL 421
SMDRH++S+FQIPAGSFGTF IIT+ WV+LYDR ++P+ASK++GKPV GVK RMG GL
Sbjct: 360 SMDRHISSTFQIPAGSFGTFVIITIVIWVILYDRAILPLASKIRGKPVHFGVKSRMGAGL 419
Query: 422 FLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQT 481
S M M +S +VENIRRR+AI +G +++ AV++MSA+WL+PQHCLNGLAEA NAI QT
Sbjct: 420 ICSAMSMALSAIVENIRRRKAIAQGIVDDLDAVVDMSALWLIPQHCLNGLAEALNAIGQT 479
Query: 482 EFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYD 541
EF+YSEFPK+MSS+A+SLFGLGMAVANLLASAI+S VD++TSKGGKESWVS NINKG ++
Sbjct: 480 EFYYSEFPKTMSSVASSLFGLGMAVANLLASAIMSTVDNVTSKGGKESWVSKNINKGHFE 539
Query: 542 NYYWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGNDVKDEEEELLHLGNSRVGNEG 601
YYWLLAI+S++N++Y++VCSWAYGP VD+ + D+G +E+E L + ++RV E
Sbjct: 540 KYYWLLAILSVINVLYYVVCSWAYGPSVDQRRTAMDDGKISSNEDE--LSMLDARVKEEE 597
Query: 602 NGLKK 606
L K
Sbjct: 598 GELHK 602
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15218183|ref|NP_175630.1| putative peptide transporter [Arabidopsis thaliana] gi|75186219|sp|Q9M817.1|PTR2X_ARATH RecName: Full=Probable peptide transporter At1g52190 gi|6850341|gb|AAF29404.1|AC022354_3 peptide transporter, putative [Arabidopsis thaliana] gi|332194645|gb|AEE32766.1| putative peptide transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/608 (64%), Positives = 486/608 (79%), Gaps = 19/608 (3%)
Query: 10 ETRQQEEAANNVQE---RRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGV 66
E E A +Q ++ KGG+ITMPFIIANEAFEKVASYGL+ NMI+YL++DY GV
Sbjct: 2 ENPPNETEAKQIQTNEGKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGV 61
Query: 67 AKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKP 126
AKGTNVLF W+AA+NF P+LGAFLSDSYLGRFLTI +AS S LGM LLWLTAM+P+VKP
Sbjct: 62 AKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKP 121
Query: 127 SPCNILT--QSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERV 184
SPC+ C S T +Q+ LL S+F ISIG+GGIRPCS+AFGADQLD K+NP NERV
Sbjct: 122 SPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERV 181
Query: 185 LESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKL 244
LESFFGWYYA+SA+AV+IA T IVYIQ+HLGWK+GFGVPA+LM+++ LLF +ASPLYV
Sbjct: 182 LESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTR 241
Query: 245 KASSSLLTGFAQVAVVAYKNRKLALPPPNASW-CYHRQKDSLLIVPTSKLRFLNKACLIR 303
+ SL TG AQ V AYK RKL+LP + S+ CY+ KDS + P+ KLRFLNKACLI
Sbjct: 242 GVTKSLFTGLAQAIVAAYKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLIS 301
Query: 304 NPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASSM 363
N E++I DG ALNPW LCT ++VEELKALIKV+P+WSTGIMMSIN SQ+SF LLQA+SM
Sbjct: 302 NREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSINTSQSSFQLLQATSM 361
Query: 364 DRHVT---SSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIG 420
DR ++ SSFQ+PAGSFG FTII LA WV+LYDR +IP+ASK++G+P RL VKLRMG+G
Sbjct: 362 DRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLG 421
Query: 421 LFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQ 480
LF+S + M +S +VE+ RR++AI +GY NN AV+++SAMWLVPQ+ L+GLAEA AI Q
Sbjct: 422 LFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQ 481
Query: 481 TEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRY 540
TEFFY+EFPKSMSSIAASLFGLGMAVA+LLAS +++AV+++TS+ GKESWVS NINKG Y
Sbjct: 482 TEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHY 541
Query: 541 DNYYWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGNDVKDEEEELLHLGNSRVGNE 600
+ YYW+LAIMS +N++Y+++CSW+YGP VD+V + N V+ EEEEL+ +
Sbjct: 542 NYYYWVLAIMSFINVIYYVICSWSYGPLVDQVRN--GRVNGVR-EEEELIDI-------V 591
Query: 601 GNGLKKEE 608
G G +KE+
Sbjct: 592 GKGFEKED 599
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297847594|ref|XP_002891678.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297337520|gb|EFH67937.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/608 (63%), Positives = 484/608 (79%), Gaps = 19/608 (3%)
Query: 10 ETRQQEEAANNVQE---RRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGV 66
E E A +Q ++ KGG+ITMPFIIANEAFEKVASYGL+ NMI+YL++DY GV
Sbjct: 2 ENPPNETEAKQIQPNEGKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGV 61
Query: 67 AKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKP 126
AKGTNVLF W+AA+NF P+LGAFLSDSYLGRFLTI +AS S LGM LLWLTAM+P+VKP
Sbjct: 62 AKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKP 121
Query: 127 SPCNILT--QSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERV 184
SPC+ C S T +Q+ LL S+F ISIG+GGIRPCS+AFGADQLD K+ P NER+
Sbjct: 122 SPCDPTAAGSHCGSATASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKEKPKNERI 181
Query: 185 LESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKL 244
LESFFGWYYA+SA+AV+IA T IVYIQ+HLGWK+GFG+PA+LM+++ LLF +ASPLYV
Sbjct: 182 LESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGIPAVLMLIAALLFILASPLYVTR 241
Query: 245 KASSSLLTGFAQVAVVAYKNRKLALPPPNASW-CYHRQKDSLLIVPTSKLRFLNKACLIR 303
+ SL TG AQ V AYK RKL+LP + S+ CY+ KDS + P+ KLRFLNKACLI
Sbjct: 242 GVTKSLFTGLAQAVVAAYKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLIS 301
Query: 304 NPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASSM 363
N E++I DG ALNPW LCT ++VEELKALIKV+P+WSTGIMMSIN SQ+SF LLQA+SM
Sbjct: 302 NREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSINTSQSSFQLLQATSM 361
Query: 364 DRHVT---SSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIG 420
DR + SSFQ+PAGSFG FTII LA WVVLYDR +IP+ASK++G+P RL VKLRMG+G
Sbjct: 362 DRRLNRHGSSFQVPAGSFGMFTIIALALWVVLYDRAVIPLASKIRGRPFRLSVKLRMGLG 421
Query: 421 LFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQ 480
LF+S + M +S +VE+ RR++A+ +GY N+ AV+++SAMWLVPQ+ L+GLAEA AI Q
Sbjct: 422 LFMSFLAMAISAMVESFRRKKALSQGYANDANAVVDISAMWLVPQYVLHGLAEALTAIGQ 481
Query: 481 TEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRY 540
TEFFY+EFPKSMSSIAASLFGLGMAVA+LLAS +++AV+++TS+ GKESWVS NINKG Y
Sbjct: 482 TEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHY 541
Query: 541 DNYYWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGNDVKDEEEELLHLGNSRVGNE 600
+ YYW+LAIMS +N++Y+++CSW+YGP VD+V + N V+ EEEELL +
Sbjct: 542 NYYYWVLAIMSFINVIYYVICSWSYGPLVDQVRN--GRVNGVR-EEEELLDI-------V 591
Query: 601 GNGLKKEE 608
G G +KE+
Sbjct: 592 GKGFEKED 599
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059108|ref|XP_002299719.1| predicted protein [Populus trichocarpa] gi|222846977|gb|EEE84524.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/467 (79%), Positives = 420/467 (89%)
Query: 120 MIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNP 179
M+PKV+P PC+I TQSC++PTT QMTLL+SSF +SIGAGG+RPCSIAFGADQLD K NP
Sbjct: 1 MVPKVRPPPCDITTQSCKTPTTGQMTLLLSSFALMSIGAGGVRPCSIAFGADQLDNKSNP 60
Query: 180 NNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASP 239
NERVLESFFGWYYA++AI+V+I+LTAIVYIQDHLGWKVGFGVPAILM LS LLFF ASP
Sbjct: 61 KNERVLESFFGWYYASAAISVLISLTAIVYIQDHLGWKVGFGVPAILMFLSALLFFFASP 120
Query: 240 LYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKA 299
YVK K S SL TGF QV VVAYKNRKLA PP ++ YH ++DS I PT+KLRFLNKA
Sbjct: 121 FYVKQKPSKSLFTGFIQVPVVAYKNRKLAFPPRDSDGWYHHKRDSKFIAPTTKLRFLNKA 180
Query: 300 CLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQ 359
C+IRNPEQDIA DGSA NPWSLCTIEQVEELKAL+KV+PLWSTGIM+SINISQ++F LLQ
Sbjct: 181 CIIRNPEQDIASDGSASNPWSLCTIEQVEELKALLKVIPLWSTGIMISINISQSTFQLLQ 240
Query: 360 ASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGI 419
ASSMDRH++SSFQIPAGSFG FTII+LA WV+LYDR ++P+ASK+KGKPV+LG KLRMGI
Sbjct: 241 ASSMDRHISSSFQIPAGSFGMFTIISLATWVILYDRAILPLASKIKGKPVQLGAKLRMGI 300
Query: 420 GLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIA 479
GLFLSCM MVVS +VE+IRRR+AIREGYLNN AVL+MSAMWLVPQ+CLNGLAEAFNAI
Sbjct: 301 GLFLSCMAMVVSAIVESIRRRKAIREGYLNNAHAVLDMSAMWLVPQYCLNGLAEAFNAIG 360
Query: 480 QTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGR 539
QTEF+YSEFPKSMSSIAA+LFGLGMAVANLLASAI+SAVD +TS+GGKESWVS+NINKG
Sbjct: 361 QTEFYYSEFPKSMSSIAAALFGLGMAVANLLASAILSAVDKLTSRGGKESWVSNNINKGH 420
Query: 540 YDNYYWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGNDVKDEE 586
YDNYYWLLAIMS VNL+YFLVCSWAYGPCV+RV V DEGN K+EE
Sbjct: 421 YDNYYWLLAIMSSVNLLYFLVCSWAYGPCVERVIKVSDEGNGFKEEE 467
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233307|ref|NP_188239.1| major facilitator protein [Arabidopsis thaliana] gi|310947330|sp|Q8LPL2.2|PTR32_ARATH RecName: Full=Probable peptide/nitrate transporter At3g16180 gi|332642260|gb|AEE75781.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/587 (64%), Positives = 464/587 (79%), Gaps = 7/587 (1%)
Query: 10 ETRQQEEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKG 69
+T +E + RR KGGL+TMPFIIANE FEKVASYGL+ NMILYLM DY LG+ KG
Sbjct: 7 QTESKETLQQPITRRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKG 66
Query: 70 TNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPC 129
VLF W AATNFMP++GAFLSDSYLGRFLTI +AS SLLGM +LWLTAM+P+VKPSPC
Sbjct: 67 QTVLFMWVAATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPC 126
Query: 130 -NILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188
+C S T++Q+ LL ++F ISIG+GGIRPCS+AFGADQLD K+NP NERVLESF
Sbjct: 127 VATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESF 186
Query: 189 FGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASS 248
FGWYYA+S++AV+IA T IVYIQDHLGWK+GFG+PAILM+L+ LF ASPLYVK S
Sbjct: 187 FGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSK 246
Query: 249 SLLTGFAQVAVVAYKNRKLALPPPNASW-CYHRQKDSLLIVPTSKLRFLNKACLIRNPEQ 307
SL TG AQV AY R L LP + S CY+R KDS L P+ KLRFLNKAC I N ++
Sbjct: 247 SLFTGLAQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNRDE 306
Query: 308 DIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASSMDRHV 367
D+ DG ALN W LCT +QVE+LKAL+KV+P+WSTGIMMSIN+SQNSF LLQA SMDR +
Sbjct: 307 DLGSDGLALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSMDRRL 366
Query: 368 TS--SFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSC 425
+S +FQIPAGSFG FTII L +WVVLYDR ++P+ASK++G+PVR+ VK+RMG+GLF+S
Sbjct: 367 SSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFISF 426
Query: 426 MGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFY 485
+ M VS VE+ RR+ AI +G N+ + + +SAMWLVPQ+ L+GLAEA I QTEFFY
Sbjct: 427 LAMAVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFFY 486
Query: 486 SEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYW 545
+EFPKSMSSIAASLFGLGMAVAN+LAS I++AV + +SK G SW+ NINKG YD YYW
Sbjct: 487 TEFPKSMSSIAASLFGLGMAVANILASVILNAVKN-SSKQGNVSWIEDNINKGHYDYYYW 545
Query: 546 LLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGNDVKDEEEELLHL 592
+LAI+S VN++Y++VCSW+YGP VD+V + D+ N ++ EEEE++ L
Sbjct: 546 VLAILSFVNVIYYVVCSWSYGPTVDQVRN--DKVNGMRKEEEEVIKL 590
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297834490|ref|XP_002885127.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297330967|gb|EFH61386.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/593 (64%), Positives = 470/593 (79%), Gaps = 11/593 (1%)
Query: 6 SDQRETRQQEEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLG 65
++ +E QQ+ ++ RR KGGL+TMPFIIANE FEKVASYGL+ NMILYLM DY LG
Sbjct: 8 TESKEILQQQP----IRRRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLG 63
Query: 66 VAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVK 125
+ KG VLF W AATNFMP++GAFLSDSYLGRFLTI +AS SLLGM +LWLTAM+P+VK
Sbjct: 64 LVKGQTVLFMWVAATNFMPLVGAFLSDSYLGRFLTIAIASLSSLLGMVVLWLTAMLPQVK 123
Query: 126 PSPC-NILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERV 184
PSPC SC S T++Q+ LL S+F ISIG+GGIRPCS+AFGADQLD K+NP NERV
Sbjct: 124 PSPCVATAGTSCSSATSSQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERV 183
Query: 185 LESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKL 244
LESFFGWYYA+S++AV+IA T IVYIQDHLGWK+GFG+PAILM+ + LF ASPLYVK
Sbjct: 184 LESFFGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLFAGFLFVFASPLYVKR 243
Query: 245 KASSSLLTGFAQVAVVAYKNRKLALPPPNASW-CYHRQKDSLLIVPTSKLRFLNKACLIR 303
S SL TG AQV AY NR L LP + S CY+R KDS L P+ KLRFLNKAC I
Sbjct: 244 NVSKSLFTGLAQVVAAAYVNRNLTLPDHHDSRDCYYRLKDSELKAPSEKLRFLNKACAIS 303
Query: 304 NPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASSM 363
N E+D+ DG ALNPW LCT +QVEELKAL+KV+P+WSTGIMMSIN+SQNSF LLQA SM
Sbjct: 304 NREEDLGSDGLALNPWRLCTTDQVEELKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSM 363
Query: 364 DRHVTS--SFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGL 421
DR ++S +FQIPAGSFG FTII L +WVVLYDR ++P+ASK++G+PVR+ VK+RMG+GL
Sbjct: 364 DRRLSSDSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGL 423
Query: 422 FLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQT 481
F+S + M VS VE+ RR+ AI +G N+ + +SAMWLVPQ+ L+GLAEA I QT
Sbjct: 424 FISFLAMAVSATVEHYRRKTAISQGLANDANTTVNISAMWLVPQYVLHGLAEALTGIGQT 483
Query: 482 EFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYD 541
EFFY+EFPKSMSSIAASLFGLGMAVAN+LAS I++AV + +SK G SW+ NINKG YD
Sbjct: 484 EFFYTEFPKSMSSIAASLFGLGMAVANILASVILNAVKN-SSKKGNVSWIEDNINKGHYD 542
Query: 542 NYYWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGNDVKDEEEELLHLGN 594
YYW+LAI+S VN++Y+++CSW+YGP VD+V + D+ N +K+EEEE++ + N
Sbjct: 543 YYYWVLAILSFVNVIYYVLCSWSYGPTVDQVRN--DKVNGMKEEEEEVIKILN 593
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20466248|gb|AAM20441.1| putative transport protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/567 (65%), Positives = 451/567 (79%), Gaps = 5/567 (0%)
Query: 10 ETRQQEEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKG 69
+T +E + RR KGGL+TMPFIIANE FEKVASYGL+ NMILYLM DY LG+ KG
Sbjct: 7 QTESKETLQQPITRRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKG 66
Query: 70 TNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPC 129
VLF W AATNFMP++GAFLSDSYLGRFLTI +AS SLLGM +LWLTAM+P+VKPSPC
Sbjct: 67 QTVLFMWVAATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPC 126
Query: 130 -NILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188
+C S T++Q+ LL ++F ISIG+GGIRPCS+AFGADQLD K+NP NERVLESF
Sbjct: 127 VATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESF 186
Query: 189 FGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASS 248
FGWYYA+S++AV+IA T IVYIQDHLGWK+GFG+PAILM+L+ LF ASPLYVK S
Sbjct: 187 FGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSK 246
Query: 249 SLLTGFAQVAVVAYKNRKLALPPPNASW-CYHRQKDSLLIVPTSKLRFLNKACLIRNPEQ 307
SL TG AQV AY R L LP + S CY+R KDS L P+ KLRFLNKAC I N ++
Sbjct: 247 SLFTGLAQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNRDE 306
Query: 308 DIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASSMDRHV 367
D+ DG ALN W LCT +QVE+LKAL+KV+P+WSTGIMMSIN+SQNSF LLQA SMDR +
Sbjct: 307 DLGSDGLALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSMDRRL 366
Query: 368 TS--SFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSC 425
+S +FQIPAGSFG FTII L +WVVLYDR ++P+ASK++G+PVR+ VK+RMG+GLF+S
Sbjct: 367 SSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFISF 426
Query: 426 MGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFY 485
+ M VS VE+ RR+ AI +G N+ + + +SAMWLVPQ+ L+GLAEA I QTEFFY
Sbjct: 427 LAMAVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFFY 486
Query: 486 SEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYW 545
+EFPKSMSSIAASLFGLGMAVAN+LAS I++AV + +SK G SW+ NINKG YD YYW
Sbjct: 487 TEFPKSMSSIAASLFGLGMAVANILASVILNAVKN-SSKQGNVSWIEDNINKGHYDYYYW 545
Query: 546 LLAIMSLVNLVYFLVCSWAYGPCVDRV 572
+LAI+S VN++Y++VCSW+YGP VD+V
Sbjct: 546 VLAILSFVNVIYYVVCSWSYGPTVDQV 572
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 611 | ||||||
| TAIR|locus:2037452 | 607 | AT1G52190 [Arabidopsis thalian | 0.960 | 0.967 | 0.631 | 1.6e-205 | |
| TAIR|locus:2093442 | 591 | AT3G16180 [Arabidopsis thalian | 0.947 | 0.979 | 0.629 | 3.6e-199 | |
| TAIR|locus:2196800 | 620 | NRT1.7 "nitrate transporter 1. | 0.875 | 0.862 | 0.386 | 1.7e-107 | |
| TAIR|locus:2144281 | 481 | AT5G11570 [Arabidopsis thalian | 0.404 | 0.513 | 0.457 | 2.4e-106 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.959 | 0.983 | 0.364 | 1.4e-103 | |
| TAIR|locus:2172249 | 616 | GTR2 "AT5G62680" [Arabidopsis | 0.931 | 0.923 | 0.365 | 1.8e-103 | |
| TAIR|locus:2205719 | 576 | NRT1.6 "nitrate transporter 1. | 0.860 | 0.913 | 0.379 | 5.6e-100 | |
| TAIR|locus:2035005 | 587 | NRT1.9 "nitrate transporter 1. | 0.870 | 0.906 | 0.378 | 2e-97 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.859 | 0.889 | 0.377 | 3e-94 | |
| TAIR|locus:2147499 | 559 | AT5G28470 [Arabidopsis thalian | 0.867 | 0.948 | 0.362 | 1.6e-93 |
| TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1988 (704.9 bits), Expect = 1.6e-205, P = 1.6e-205
Identities = 382/605 (63%), Positives = 475/605 (78%)
Query: 10 ETRQQEEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKG 69
ET ++ N + ++ KGG+ITMPFIIANEAFEKVASYGL+ NMI+YL++DY GVAKG
Sbjct: 7 ETEAKQIQTN--EGKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKG 64
Query: 70 TNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPC 129
TNVLF W+AA+NF P+LGAFLSDSYLGRFLTI +AS S LGM LLWLTAM+P+VKPSPC
Sbjct: 65 TNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPC 124
Query: 130 NILTQS--CESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187
+ C S T +Q+ LL S+F ISIG+GGIRPCS+AFGADQLD K+NP NERVLES
Sbjct: 125 DPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLES 184
Query: 188 FFGWYYXXXXXXXXXXXXXXXYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKAS 247
FFGWYY YIQ+HLGWK+GFGVPA+LM+++ LLF +ASPLYV +
Sbjct: 185 FFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVT 244
Query: 248 SSLLTGFAQVAVVAYKNRKLALPPPNASW-CYHRQKDSLLIVPTSKLRFLNKACLIRNPE 306
SL TG AQ V AYK RKL+LP + S+ CY+ KDS + P+ KLRFLNKACLI N E
Sbjct: 245 KSLFTGLAQAIVAAYKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNRE 304
Query: 307 QDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASSMDRH 366
++I DG ALNPW LCT ++VEELKALIKV+P+WSTGIMMSIN SQ+SF LLQA+SMDR
Sbjct: 305 EEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSINTSQSSFQLLQATSMDRR 364
Query: 367 VT---SSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFL 423
++ SSFQ+PAGSFG FTII LA WV+LYDR +IP+ASK++G+P RL VKLRMG+GLF+
Sbjct: 365 LSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFM 424
Query: 424 SCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEF 483
S + M +S +VE+ RR++AI +GY NN AV+++SAMWLVPQ+ L+GLAEA AI QTEF
Sbjct: 425 SFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEF 484
Query: 484 FYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNY 543
FY+EFPKSMSSIAASLFGLGMAVA+LLAS +++AV+++TS+ GKESWVS NINKG Y+ Y
Sbjct: 485 FYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYY 544
Query: 544 YWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGNDVKDEEEELLHLGNSRVGNEGNG 603
YW+LAIMS +N++Y+++CSW+YGP VD+V + G N V+ EEEEL+ + G G
Sbjct: 545 YWVLAIMSFINVIYYVICSWSYGPLVDQVRN-G-RVNGVR-EEEELIDI-------VGKG 594
Query: 604 LKKEE 608
+KE+
Sbjct: 595 FEKED 599
|
|
| TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1928 (683.7 bits), Expect = 3.6e-199, P = 3.6e-199
Identities = 370/588 (62%), Positives = 453/588 (77%)
Query: 10 ETRQQEEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKG 69
+T +E + RR KGGL+TMPFIIANE FEKVASYGL+ NMILYLM DY LG+ KG
Sbjct: 7 QTESKETLQQPITRRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKG 66
Query: 70 TNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPC 129
VLF W AATNFMP++GAFLSDSYLGRFLTI +AS SLLGM +LWLTAM+P+VKPSPC
Sbjct: 67 QTVLFMWVAATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPC 126
Query: 130 NILTQ--SCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187
+ T +C S T++Q+ LL ++F ISIG+GGIRPCS+AFGADQLD K+NP NERVLES
Sbjct: 127 -VATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLES 185
Query: 188 FFGWYYXXXXXXXXXXXXXXXYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKAS 247
FFGWYY YIQDHLGWK+GFG+PAILM+L+ LF ASPLYVK S
Sbjct: 186 FFGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVS 245
Query: 248 SSLLTGFAQVAVVAYKNRKLALPPPNASW-CYHRQKDSLLIVPTSKLRFLNKACLIRNPE 306
SL TG AQV AY R L LP + S CY+R KDS L P+ KLRFLNKAC I N +
Sbjct: 246 KSLFTGLAQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNRD 305
Query: 307 QDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASSMDRH 366
+D+ DG ALN W LCT +QVE+LKAL+KV+P+WSTGIMMSIN+SQNSF LLQA SMDR
Sbjct: 306 EDLGSDGLALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSMDRR 365
Query: 367 VTSS--FQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLS 424
++S+ FQIPAGSFG FTII L +WVVLYDR ++P+ASK++G+PVR+ VK+RMG+GLF+S
Sbjct: 366 LSSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFIS 425
Query: 425 CMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFF 484
+ M VS VE+ RR+ AI +G N+ + + +SAMWLVPQ+ L+GLAEA I QTEFF
Sbjct: 426 FLAMAVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFF 485
Query: 485 YSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYY 544
Y+EFPKSMSSIAASLFGLGMAVAN+LAS I++AV + +SK G SW+ NINKG YD YY
Sbjct: 486 YTEFPKSMSSIAASLFGLGMAVANILASVILNAVKN-SSKQGNVSWIEDNINKGHYDYYY 544
Query: 545 WLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGNDVKDEEEELLHL 592
W+LAI+S VN++Y++VCSW+YGP VD+V + D+ N ++ EEEE++ L
Sbjct: 545 WVLAILSFVNVIYYVVCSWSYGPTVDQVRN--DKVNGMRKEEEEVIKL 590
|
|
| TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
Identities = 212/548 (38%), Positives = 328/548 (59%)
Query: 25 RRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMP 84
++ GG + FI+ NE E++ S GL+ N ++YL K +HL NV+ W+ TN P
Sbjct: 50 KKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTNLTP 109
Query: 85 ILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQ-SCESPTTAQ 143
++GA++SD+Y+GRF TI ASF +LLG+ + LTA P++ P+ CN SC P Q
Sbjct: 110 LVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPNKLQ 169
Query: 144 MTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYXXXXXXXXXX 203
+ +L+ CF+S+G+GGIRPCSI FG DQ D++ + V SFF WYY
Sbjct: 170 IGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVA-SFFNWYYMTFTVVLIIT 228
Query: 204 XXXXXYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYK 263
YIQD + W +GF +P LM L++++FF YV +K S+ +G AQV V A K
Sbjct: 229 QTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARK 288
Query: 264 NRKLALPPPN-ASWCYHRQ--KDSLL--IVPTSKLRFLNKACLIRNPEQDIAPDGSALNP 318
RKL LP + + Y+ K S+L + +++ R L+KA ++ E D+ P+G +
Sbjct: 289 KRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVI--EGDLTPEGPPADK 346
Query: 319 WSLCTIEQVEELKALIKVLPLWSTGIM-MSINISQNSFPLLQASSMDRHVTSSFQIPAGS 377
W LC++++VEE+K LI+++P+WS GI+ ++ +Q +F + QA MDR++ F+IPAGS
Sbjct: 347 WRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIPAGS 406
Query: 378 FGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENI 437
+++T+ ++ YDRV +P ++ G + + R+G G+ + M+V+G+VE +
Sbjct: 407 LSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIVERM 466
Query: 438 RRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAA 497
RR R+I G + + MS WL PQ L GL EAFN I Q EFF S+FP+ M SIA
Sbjct: 467 RRIRSINAG---DPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRSIAN 523
Query: 498 SLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVY 557
SLF L A ++ L+S +V+ V + + W++ N+N G+ D +Y+L+A++ +VNLVY
Sbjct: 524 SLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAVLGVVNLVY 583
Query: 558 FLVCSWAY 565
F C+ Y
Sbjct: 584 FWYCARGY 591
|
|
| TAIR|locus:2144281 AT5G11570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
Identities = 119/260 (45%), Positives = 172/260 (66%)
Query: 311 PDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMS-INISQNSFPLLQASSMDRHV-T 368
P ++ NPW LC ++QVE+LK+LI V+P+WSTGI++S + Q SF +LQA +MDRH
Sbjct: 231 PTRNSRNPWKLCRVQQVEDLKSLINVIPIWSTGIILSLVTACQVSFIVLQAKTMDRHTFI 290
Query: 369 SSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGM 428
F+IP GS+G F +I+ ++ LYD V++P+ S +P RLGV +RM G +S + +
Sbjct: 291 QGFEIPPGSYGIFLVISFLLFLGLYDLVIVPLLSWALREPFRLGVMVRMWAGYVISVLCI 350
Query: 429 VVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEF 488
E RR+ A E +G ++SAMWL+P L G+AEA N IAQ EFFYSE
Sbjct: 351 SALAATEYARRKTARDE----SGT---KLSAMWLLPYMILGGIAEALNTIAQNEFFYSEL 403
Query: 489 PKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLA 548
PK+MSS+A +L L MA A+L++S I++ VD +T+ G SW++ NI++G D YYWLL
Sbjct: 404 PKTMSSVATTLSSLNMAAASLISSWIITIVD-VTTYG---SWITENIDEGHLDYYYWLLV 459
Query: 549 IMSLVNLVYFLVCSWAYGPC 568
+SL+N++YF+ C +YG C
Sbjct: 460 GLSLLNVLYFVWCKKSYGKC 479
|
|
| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
Identities = 221/606 (36%), Positives = 351/606 (57%)
Query: 5 ISDQRETR-QQEEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYH 63
+ +Q + + +EE + + R KGGLITMPFI ANE EK+A G NMI YL H
Sbjct: 1 MEEQSKNKISEEEKQLHGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLH 60
Query: 64 LGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPK 123
L + K N L + ++ P+LGAF++DS+ GRF TI AS +GM LL ++A+IP
Sbjct: 61 LPLTKAANTLTNFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPT 120
Query: 124 VKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNER 183
++P PC + C TAQ+++L + ++G+GGIRPC +AFGADQ D D PN
Sbjct: 121 LRPPPCKG-EEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESD-PNQTT 178
Query: 184 VLESFFGWYYXXXXXXXXXXXXXXXYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVK 243
++F WYY +IQD++GW +G G+P + M LS++ F LY
Sbjct: 179 KTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRH 238
Query: 244 LKASSSLLTGFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLL-----IVPTSKLRFLNK 298
L + S T QV V A++ RKL + + ++ + D+ + + T + FL+K
Sbjct: 239 LVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDK 298
Query: 299 ACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMM-SINISQNSFPL 357
A ++ E ++ P G N W L T+ +VEELK++I++ P+ ++GI++ + Q +F L
Sbjct: 299 AAIVTE-EDNLKP-GQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSL 356
Query: 358 LQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRM 417
QA +M+RH+T+SFQIPAGS FT + + ++ YDRV + VA K G + RM
Sbjct: 357 QQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRM 416
Query: 418 GIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNA 477
GIG +S + +V+G VE R+ AI G L+ ++ +S +WL+PQ+ L+G+AEAF +
Sbjct: 417 GIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMS 476
Query: 478 IAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWV-SSNIN 536
I EFFY + P+SM S A +LF + +++ N +++ +V+ V ++K +W+ +N+N
Sbjct: 477 IGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLN 536
Query: 537 KGRYDNYYWLLAIMSLVNLVYFLVCS--WAYGPCVDRVTSVGDEGNDVKDEEEELLHLGN 594
+GR + +YWL+ ++ VNLVY+L C+ + Y P +V ++ + VK+E L L N
Sbjct: 537 RGRLEYFYWLITVLQAVNLVYYLWCAKIYTYKPV--QVHHSKEDSSPVKEE----LQLSN 590
Query: 595 SRVGNE 600
+ +E
Sbjct: 591 RSLVDE 596
|
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| TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
Identities = 215/589 (36%), Positives = 337/589 (57%)
Query: 15 EEAANNVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLF 74
EE N ++ +G + MPFII NE FEK+ G ++N+++YL ++L ++
Sbjct: 33 EEDVQNQKKVVYRGWKV-MPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIIN 91
Query: 75 FWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQ 134
++ NF + AFL D+Y GR+ T+ +A LG F++ LTA +P++ P+ C
Sbjct: 92 AFSGTINFGTFVAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAAD 151
Query: 135 S-CESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYY 193
S C P+ Q+ L+ F+ +GAGGIRPC++AFGADQ + K + +R ++SFF WY+
Sbjct: 152 SICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSE-SGKRGIDSFFNWYF 210
Query: 194 XXXXXXXXXXXXXXXYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTG 253
Y+Q ++ W +G +PA+LM L+ L+FF LYVK+KAS S L G
Sbjct: 211 FTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAG 270
Query: 254 FAQVAVVAYKNRKLALPPPNASWC----YHRQK-DSLLIVPTSKLRFLNKACLIRNPEQD 308
AQV VA K R L P W Y+ K + + T + RFL+KA ++ PE
Sbjct: 271 IAQVIAVAIKKR--GLKPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAAIL-TPEDK 327
Query: 309 IAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQN-SFPLLQASSMDRHV 367
+ PDG +PW LCT++QVEE+K +++VLP+W + + I+Q ++P+ QA DR +
Sbjct: 328 LQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRL 387
Query: 368 TSS-FQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCM 426
S F IPA ++ F + + ++V+YDRVL+P ++ G + + R+G G+F +
Sbjct: 388 GSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATA 447
Query: 427 GMVVSGLVENIRRRRAIREGYLN----NGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTE 482
+VV+G VE RR A+ + L G+ + MSAMWL+PQ L G+AEAF AI Q E
Sbjct: 448 SLVVAGFVEERRRTFALTKPTLGMAPRKGE-ISSMSAMWLIPQLSLAGVAEAFAAIGQME 506
Query: 483 FFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDN 542
F+Y +FP++M S A S+F +G V++ L S +++ V T +W++ ++NKGR D
Sbjct: 507 FYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRLDL 566
Query: 543 YYWLLAIMSLVNLVYFLVCS-W-AYGPCVDRVTSVGDEGNDVKDEEEEL 589
+Y+++A + VN YFLV S W Y D VT+ N +K +++ +
Sbjct: 567 FYFMIAGILAVNFAYFLVMSRWYRYKGSDDEVTTYETNENIIKQQDKNV 615
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| TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
Identities = 208/548 (37%), Positives = 315/548 (57%)
Query: 25 RRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMP 84
++ GG + FI+ NE EK+ S G+ N +LYL +H+ + NV + W TNF P
Sbjct: 13 KKLGGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNFAP 72
Query: 85 ILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNIL-TQSCESPTTAQ 143
+LGA +SD+Y+GRF TI AS S+LG+ + LTA +P++ P PCN C+ P Q
Sbjct: 73 LLGALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCNNPHPDECDDPNKLQ 132
Query: 144 MTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYXXXXXXXXXX 203
+ +L F+SIG+GGIRPCSI FG DQ D++ + V SFF WYY
Sbjct: 133 LGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLKGVA-SFFNWYYLTLTMVLIFS 191
Query: 204 XXXXXYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYK 263
Y+Q + W +GF +P LM +++LFF+ YV +K S+ +G A+V V A K
Sbjct: 192 HTVVVYLQT-VSWVIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFSGIARVIVAARK 250
Query: 264 NR--KLALPPPNASWCYHRQ-KDSLLI-VP-TSKLRFLNKACLIRNPEQDIAPDGSALNP 318
R K++L Y K +L +P T + +FL+KA +I + D+ +G N
Sbjct: 251 KRDLKISLVDDGTEEYYEPPVKPGVLSKLPLTDQFKFLDKAAVIL--DGDLTSEGVPANK 308
Query: 319 WSLCTIEQVEELKALIKVLPLWSTGIMMSINIS-QNSFPLLQASSMDRHVTSSFQIPAGS 377
W LC+I++VEE+K LI+V+P+WS GI+ + ++ Q +F + QA+ MDRH+ F+IPA S
Sbjct: 309 WRLCSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVFQATKMDRHMGPHFEIPAAS 368
Query: 378 FGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENI 437
+ IT+ WV +Y+ +L+P +M+ R+ + RMGIG+ + + M +G VE +
Sbjct: 369 ITVISYITIGIWVPIYEHLLVPFLWRMR--KFRVTLLQRMGIGIVFAILSMFTAGFVEGV 426
Query: 438 RRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAA 497
RR RA + +MS WL L GL E+FN I EFF S+FP+ M SIA
Sbjct: 427 RRTRATE---------MTQMSVFWLALPLILMGLCESFNFIGLIEFFNSQFPEHMRSIAN 477
Query: 498 SLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVY 557
SLF L A AN L+S +V+ V ++ W++ ++++G+ D +Y+L+A++ +VNLVY
Sbjct: 478 SLFPLSFAAANYLSSLLVTTVHKVSGTKDHPDWLNKDLDRGKLDYFYYLIAVLGVVNLVY 537
Query: 558 FLVCSWAY 565
F C+ Y
Sbjct: 538 FWYCAHRY 545
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| TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
Identities = 206/544 (37%), Positives = 311/544 (57%)
Query: 29 GLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGA 88
G MPFII NE FEK+ G +N+++YL +++ V+ + +NF I+ A
Sbjct: 22 GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81
Query: 89 FLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPC-NILTQSCESPTTAQMTLL 147
FL DSY GR+ T+ A LG + LTA+I + P+ C + C P+ Q+ L
Sbjct: 82 FLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFL 141
Query: 148 ISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYXXXXXXXXXXXXXX 207
+ + IGAGGIRPC++ FGADQ D K +R +ESFF WY+
Sbjct: 142 AGAMVLLVIGAGGIRPCNLPFGADQFDPKTK-EGKRGIESFFNWYFFTFTFAQMVSLTLI 200
Query: 208 XYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKL 267
Y+Q ++ W +G +PAILM+L ++FF S LYVK+KAS S + +V VVA K R+L
Sbjct: 201 VYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRL 260
Query: 268 ALPPPNASWCYHRQ--KDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIE 325
PN + Y K+S L T + RFL+K+ I+ + + DGS ++ W LC+++
Sbjct: 261 KPVGPNELYNYIASDFKNSKL-GHTEQFRFLDKSA-IQTQDDKLNKDGSPVDAWKLCSMQ 318
Query: 326 QVEELKALIKVLPLW-STGIMMSINISQNSFPLLQASSMDRHV-TSSFQIPAGSFGTFTI 383
QVEE+K +I+VLP+W S + I Q ++ + Q+ DR + SFQIPAGS+ F +
Sbjct: 319 QVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFLM 378
Query: 384 ITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAI 443
+ + ++ +YDRVL+P K G+ + R+G GLFL M+VS +VE RR+ A+
Sbjct: 379 LGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVAL 438
Query: 444 RE---GYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLF 500
+ G A+ MS MWL+PQ L G+A+A + Q EF+Y +FP++M S A SL+
Sbjct: 439 TKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFAGSLY 498
Query: 501 GLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLV 560
G+ +A+ L++ ++SAV D T SW+ ++NKGR + +Y+L+A M +NL YFL+
Sbjct: 499 YCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRLEYFYFLVAGMMTLNLAYFLL 558
Query: 561 CS-W 563
S W
Sbjct: 559 VSHW 562
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| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
Identities = 209/553 (37%), Positives = 310/553 (56%)
Query: 20 NVQERRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAA 79
N +++ G PFI+ NE E++A YG+ N+I Y + H + + W
Sbjct: 46 NPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGT 105
Query: 80 TNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPC-NILTQSCES 138
P++GA ++DSY GR+ TI S +GM LL L+A +P +KP+ C + C
Sbjct: 106 CYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSP 165
Query: 139 PTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLE-SFFGWYYXXXX 197
TT Q + + I++G GGI+PC +FGADQ D D P ERV + SFF W+Y
Sbjct: 166 ATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTD-PR-ERVRKASFFNWFYFSIN 223
Query: 198 XXXXXXXXXXXYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQV 257
++Q+++GW +GF +P + M +S+ FFI +PLY K S +T QV
Sbjct: 224 IGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQV 283
Query: 258 AVVAYKNRKLALPPPNASWCYH-RQKDSLL-----IVPTSKLRFLNKACLIRNPEQDIAP 311
V AY+ KL LP + S+ Y R+K+S++ I T +FL+KA +I E +
Sbjct: 284 LVAAYRKLKLNLPE-DISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYE---SK 339
Query: 312 DGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQAS-SMDRHVTSS 370
G+ NPW LCT+ QVEE+K LI++ P+W++GI+ S+ SQ S +Q SM+R + S
Sbjct: 340 SGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNR-IIRS 398
Query: 371 FQIPAGSFGTF-TIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMV 429
F+IP SFG F T+I L + + +YDR L+P + G P L RMGIGLFLS + +
Sbjct: 399 FEIPPASFGVFDTLIVLIS-IPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIA 457
Query: 430 VSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFP 489
+ +VE +R + A Q + MS W +PQ+ L G+AE F I + EFFY E P
Sbjct: 458 AAAIVETVRLQLA---------QDFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESP 508
Query: 490 KSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAI 549
+M S+ ++L L AV + L+S I++ V T+ GGK+ WV ++NKG D ++WLL
Sbjct: 509 DAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVS 568
Query: 550 MSLVNL-VYFLVC 561
+ LVN+ VY L+C
Sbjct: 569 LGLVNIPVYALIC 581
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| TAIR|locus:2147499 AT5G28470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
Identities = 199/549 (36%), Positives = 315/549 (57%)
Query: 24 RRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFM 83
++ KGG + +IIANE+FEK+AS L+ N+ +YLM Y+LG NV+ W + N +
Sbjct: 15 KKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVFLVNVINIWFGSCNIL 74
Query: 84 PILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCES-PTTA 142
+ GAF+SD+YLGRF T+ L S S +GM + LTA +P ++P C I +C + P
Sbjct: 75 TLAGAFVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDAC-IDPSNCSNQPAKW 133
Query: 143 QMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYXXXXXXXXX 202
Q+ +L S ++IGAGG+RPC+IAFGADQ D LE+FF W+Y
Sbjct: 134 QLGVLFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAH-LETFFNWWYFSFTVALVI 192
Query: 203 XXXXXXYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAY 262
YIQ ++ W +GF +P + LS+ F I Y+ KA S+ +V A
Sbjct: 193 ALTGVVYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGSVFADIVKVVTAAC 252
Query: 263 KNRKLALPPPNASWCYHRQKD---SLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPW 319
K RK+ P + ++ D + L+ +LRF +KA ++ NP + + DG+A W
Sbjct: 253 KKRKVK-PGSDITFYIGPSNDGSPTTLVRDKHRLRFFDKASIVTNPNE-LNEDGNAKYKW 310
Query: 320 SLCTIEQVEELKALIKVLPLWSTGIMMSI-NISQNSFPLLQASSMDRHV-TSSFQIPAGS 377
LC+++QV+ LK + +LP+W TGI I QN + +LQA MD+ +FQ+PAG
Sbjct: 311 RLCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQMDKTFGPHNFQVPAGW 370
Query: 378 FGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENI 437
++ITLA W+ LY+ V+IP+ ++ G+ RL +K R+ I + + CM +V+G E
Sbjct: 371 MNLVSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIEIVMGIICM--IVAGFQEKK 428
Query: 438 RRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAA 497
RR A++ NG V +S + L+PQ L GL EAF+A+A EF P+ M ++A
Sbjct: 429 RRASALK-----NGSFVSPVSIVMLLPQFALAGLTEAFSAVALMEFLTVRMPEHMRAVAG 483
Query: 498 SLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSS-NINKGRYDNYYWLLAIMSLVNLV 556
++F L ++A+ + + +++ +D +T K GK SW+ ++NK R +NY++++A + + NL+
Sbjct: 484 AIFFLSSSIASYICTLLINVIDAVTRKEGK-SWLGDKDLNKNRLENYFFIIAGIQVANLL 542
Query: 557 YFLVCSWAY 565
YF + + Y
Sbjct: 543 YFRLFASRY 551
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M817 | PTR6_ARATH | No assigned EC number | 0.6447 | 0.9639 | 0.9703 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00034361001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (622 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 611 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 1e-54 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 3e-21 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 4e-19 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 5e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-07 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 5e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 3e-04 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 1e-54
Identities = 111/411 (27%), Positives = 181/411 (44%), Gaps = 45/411 (10%)
Query: 98 FLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIG 157
F TI L S +G LL L A S + Q+ L I++G
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGA---------------IPPSLSPVQVALFYIGLYLIALG 45
Query: 158 AGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWK 217
GGI+P AFGADQ D + + FF W+Y + +IA Y+Q ++G+
Sbjct: 46 TGGIKPNVSAFGADQFD----ETQDPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYP 101
Query: 218 VGFGVPAILMVLSLLLFFIASPLYVKLKAS--SSLLTGFAQVAVVAYKNRKLALPPPNAS 275
+GFG+PA+ M+L+LL+F + S Y K S A + A KNRKL L P ++
Sbjct: 102 LGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQL-PKDSH 160
Query: 276 WCYHRQK--DSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKAL 333
W Y + + I S+ + + +I P P AL V L+A+
Sbjct: 161 WLYWALEKYNKRSI---SQTKVHTRVAVIFIPL----PKFWALF----DQQGSVWLLQAI 209
Query: 334 IKVLPLWSTGIMMSINISQNS-FPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVL 392
+ +LP+W+ I+ +Q + + Q +MDR + F+IP SF +F + + + +
Sbjct: 210 LLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPI 269
Query: 393 YDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQ 452
D ++ P+ +G + R G+G+F+ + ++ +VE R R A G + G
Sbjct: 270 LDFLVYPLLRLKRGLT----LPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGW 325
Query: 453 AVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLG 503
V + +W +P+ ++G+ A EF P SM S+ L
Sbjct: 326 TVP-LFILWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTLLSAAA 371
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The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 3e-21
Identities = 86/488 (17%), Positives = 163/488 (33%), Gaps = 69/488 (14%)
Query: 36 IIANEAFEKVASYGLVTNMILYLMKDY--HLGVAKGT-NVLF-FWTAATNFMPILGAFLS 91
I E +E+ + YG+ +ILYL LG + LF + + PI+G +L+
Sbjct: 26 IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85
Query: 92 DSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSF 151
D LG TI L + +G +L + + + L
Sbjct: 86 DRVLGTRRTIVLGAILMAIGHLVLAI---------------------SSVSGPGGLYIGL 124
Query: 152 CFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQ 211
I +G G +P + + + D + F +Y I +IA +
Sbjct: 125 ALIIVGTGLFKPNISSLLGELYPKDDPR-----RDGGFTLFYMGINIGSLIAPIITGLLA 179
Query: 212 DHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPP 271
+ GW VGFG+ A+ M++ L+ F+ +VK +++
Sbjct: 180 INYGWHVGFGLAAVGMIIG-LVIFLLGRRHVKGIGGVPDP------NPLSFNFLL----- 227
Query: 272 PNASWCYHRQKDSLLIVPTSKLRFLNKACLI-RNPEQDIAPDGSALN-PWSLCTIEQVEE 329
P +L + L N + IA A +E
Sbjct: 228 PVLGGLVVM----ILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF----DE 279
Query: 330 LKALIKVLPLWSTGIMMSINISQNSFPL-LQASSMDRHVTSSFQIPAGSFGTFTIITLAA 388
+ L+ +PL+ ++ Q L L A F++P F +
Sbjct: 280 RRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPF---- 335
Query: 389 WVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYL 448
+++L+ +L + +K+ + ++ +GL L+ +G ++ L +
Sbjct: 336 FIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGL---- 391
Query: 449 NNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVAN 508
+S WLV + L E F + P ++ S +++ L +A
Sbjct: 392 --------VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQ 443
Query: 509 LLASAIVS 516
L +
Sbjct: 444 TLGGQVAG 451
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 4e-19
Identities = 99/402 (24%), Positives = 166/402 (41%), Gaps = 77/402 (19%)
Query: 48 YGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107
YG+ T ++LYL+ TN+ +T P++GA ++DS+LG+F TI S
Sbjct: 4 YGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLV 63
Query: 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIA 167
++G L L A+ S P ++L+ + I++G GGI+PC A
Sbjct: 64 YVVGHALASLGAV-------------PSLGHPLHDALSLVGLA--LIALGTGGIKPCVSA 108
Query: 168 FGADQLDRKDNPNNERVLESFFGWYY-ATSAIAVVIALTAIVYIQ--------DHLGWKV 218
FG DQ + + + FF ++Y A +A ++ T I I + +
Sbjct: 109 FGGDQFEER----QLSLRFRFFSFFYFAINAGSLFS--TIITPILRGDVGCFGCQDCFPL 162
Query: 219 GFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWCY 278
FGVP ILM L+L++F + S +Y K ++++ + V A K
Sbjct: 163 AFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKK-----------RFR 211
Query: 279 HRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVL- 337
R +D +L +L+ A P+ I + K L++VL
Sbjct: 212 TRSED------WPRLHWLDWA----APKYL---------------IRMIRSTKRLLRVLF 246
Query: 338 ---PLWSTGIMMSINISQNSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYD 394
PL + ++ Q S LQA+ MD V F I + + V ++D
Sbjct: 247 LFIPLP---MFWALFDQQGSRWTLQATRMDGDV-GLFPIQPDQMQAVNPLLVLILVPIFD 302
Query: 395 RVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVEN 436
V+ P +K G K M +G+ L+ + V+ L++N
Sbjct: 303 YVVYPALAKC-GTRFTSLRK--MAVGMLLAALAFAVAALLQN 341
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 5e-10
Identities = 79/423 (18%), Positives = 148/423 (34%), Gaps = 90/423 (21%)
Query: 29 GLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFF--WTAATNFMPIL 86
L T+ F+ E +E+ + YG+ + +YL++ LG ++ + F ++A + +
Sbjct: 11 PLFTLFFV---ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSV 67
Query: 87 GAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTL 146
G + D G T+ L +LG F+L AM L
Sbjct: 68 GWWFGDRVWGTKKTMVLGGIVLMLGHFML---AMSI--------------------YPDL 104
Query: 147 LISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTA 206
+ I++G+G + + +R D P + F +Y + I I+
Sbjct: 105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP----RRDGGFTLFYMSINIGSFISPLL 160
Query: 207 IVYIQDHLGWKVGFGVPAILMVLSLLLFFIAS-----------PLYVKLKASSSLLTGF- 254
I ++ G+ VGF + A+ MV+ LL FF PL + K LL
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALL 220
Query: 255 AQVAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGS 314
A +A+V + +W H + +++ T L I
Sbjct: 221 AALALVFF-----------CAWLMHHVVIANILLMTVTLAV-------------IIFFFR 256
Query: 315 ALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQ--NSFPLLQASSMDRHVTSSFQ 372
L + + + + L+ ++ + +Q S ++M +
Sbjct: 257 LAFKPRLDAVAR----NKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEM-LGMS 311
Query: 373 IPAGSFGTFTIITLAAWVVLYDRVLIPVASKM--KGKPVRLGVKLRMGIGLFLSCMGMVV 430
+P F + WVV+ VL + +++ KGK +K +GM+
Sbjct: 312 VPVIWFQSLNPF----WVVVGSPVLAMIWTRLGRKGKDPTTPLKF---------TLGMLF 358
Query: 431 SGL 433
G
Sbjct: 359 CGA 361
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 35/217 (16%)
Query: 46 ASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLAS 105
GL++ + L +D L ++ ++ ++ +L +LSD + GR + L
Sbjct: 13 LDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGL 71
Query: 106 FCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCS 165
LG LL + + LL+ + +G G + P +
Sbjct: 72 LLFALGSLLLAFASSLW-----------------------LLLVGRFLLGLGGGALYPAA 108
Query: 166 IAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAI 225
A A+ P ER G + A + ++ + + LGW+ F + AI
Sbjct: 109 AALIAEWF-----PPKERGR--ALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI 161
Query: 226 LMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAY 262
L +L LL ++L +L
Sbjct: 162 LGLLLALLLL----FLLRLLLLLALAFFLLSFGYYGL 194
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 44/201 (21%), Positives = 80/201 (39%), Gaps = 27/201 (13%)
Query: 35 FIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSY 94
+++A + +E + YG+ +ILYL + + + PILG FL+D
Sbjct: 13 YVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKV 72
Query: 95 LGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFI 154
LG + + L + +G +L + + P + L S I
Sbjct: 73 LGNRMAVMLGALLMAIGHVVLGASEIHP----------------------SFLYLSLAII 110
Query: 155 SIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHL 214
G G + +++ +L +P + F YA + +IA A Y Q+
Sbjct: 111 VCGYGLFKS-NVSCLLGELYEPTDPRRD----GGFSLMYAAGNVGSIIAPIACGYAQEEY 165
Query: 215 GWKVGFGVPAILMVLSLLLFF 235
W +GFG+ A+ M+ L++F
Sbjct: 166 SWAMGFGLAAVGMIAGLVIFL 186
|
Length = 493 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 30/189 (15%)
Query: 48 YGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107
YGL+T + LYL + L A+ +L + +LG LSD R L + +
Sbjct: 192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLL 251
Query: 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIA 167
+ LG+ LL L + LL+ + + G G P +
Sbjct: 252 AALGLLLLALAP-----------------------SLALLLVALLLLGFGLGFAFPALLT 288
Query: 168 FGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILM 227
++ + G + ++ + + D G+ F + A L
Sbjct: 289 LASELAP-------PEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALA 341
Query: 228 VLSLLLFFI 236
+L+ LL +
Sbjct: 342 LLAALLLLL 350
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 39/228 (17%), Positives = 70/228 (30%), Gaps = 35/228 (15%)
Query: 46 ASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLAS 105
L + LYL +D + + +L ++ L LSD + GR + +
Sbjct: 11 GRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIGL 69
Query: 106 FCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCS 165
LG+ LL + + LL+ +G G + P +
Sbjct: 70 LLFALGLLLLLFAS-----------------------SLWLLLVLRVLQGLGGGALFPAA 106
Query: 166 IAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAI 225
A AD ++ G A + + + GW+ F + AI
Sbjct: 107 AALIADWFPPEERG-------RALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAI 159
Query: 226 LMVLS----LLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLAL 269
L +L+ LL P + K + + ++ L L
Sbjct: 160 LALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWL 207
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 611 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.93 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.93 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.93 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.92 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.92 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.92 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.92 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.91 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.91 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.91 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.91 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.91 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.91 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.91 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.91 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.91 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.91 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.91 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.91 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.91 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.91 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.9 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.9 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.9 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.9 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.9 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.9 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.9 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.9 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.9 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.9 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.9 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.9 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.9 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.89 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.89 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.89 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.89 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.89 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.89 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.89 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.88 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.88 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.88 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.88 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.88 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.88 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.87 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.87 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.87 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.87 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.87 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.87 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.87 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.86 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.85 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.85 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.85 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.85 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.84 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.84 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.84 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.83 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.83 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.83 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.83 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.82 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.82 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.81 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.8 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.8 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.8 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.79 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.78 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.78 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.73 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.72 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.72 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.72 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.72 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.71 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.71 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.7 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.7 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.7 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.69 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.69 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.68 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.68 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.68 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.66 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.66 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.65 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.63 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.59 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.57 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.56 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.55 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.52 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.5 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.5 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.48 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.45 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.45 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.44 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.43 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.42 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.41 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.41 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.39 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.38 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.37 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.37 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.36 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.36 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.35 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.35 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.35 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.34 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.34 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.31 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.31 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.31 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.31 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.29 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.28 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.28 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.28 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.28 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.28 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.27 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.27 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.26 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.26 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.26 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.23 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.22 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.22 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.21 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.18 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.18 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.18 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.18 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.18 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.18 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.17 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.15 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.14 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.13 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.13 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.13 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.11 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.11 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.11 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.11 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.08 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.08 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.07 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.07 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.07 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.07 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.07 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.07 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.05 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.04 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.04 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.02 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.02 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.01 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.99 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.98 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.97 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.95 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.95 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.95 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.93 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.89 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.88 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.87 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.87 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.86 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.84 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.83 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.82 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.78 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.78 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.77 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.77 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.76 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.75 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.74 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.73 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.71 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.68 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.67 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.66 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.6 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.56 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.53 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.5 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.47 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.45 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.42 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.4 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.39 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.36 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.34 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.31 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.26 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.17 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.15 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.13 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.12 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.11 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.1 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.08 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.07 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.0 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.97 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.91 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.86 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.84 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.77 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.69 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.66 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.66 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.65 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.59 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.34 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.33 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.29 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.21 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.18 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.1 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.0 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.96 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.84 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.83 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.59 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.52 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.44 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.47 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.38 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.27 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.25 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 95.24 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 94.73 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 94.65 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.25 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 93.67 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 93.65 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 93.56 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 93.45 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 93.41 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 93.15 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 91.9 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 89.56 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 88.88 | |
| KOG4255 | 439 | consensus Uncharacterized conserved protein [Funct | 87.46 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 87.22 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 85.9 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 85.84 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 85.72 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 84.27 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 82.67 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=426.46 Aligned_cols=533 Identities=42% Similarity=0.745 Sum_probs=475.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 007262 26 RKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLAS 105 (611)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~ 105 (611)
..+.|+.+.+++..+.++++++|++..++..|+..++|.+..++...+..+.......++++++++|-|+||.+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCC--CccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcch
Q 007262 106 FCSLLGMFLLWLTAMIPKVKPSPC--NILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNER 183 (611)
Q Consensus 106 ~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~ 183 (611)
++..+|.+++.++.++|..+|+.| .+-+-.|...+......++.+.-+.++|.|+..|+..++.+||+++.+++++ +
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~-~ 190 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV-K 190 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh-h
Confidence 999999999999988999999988 1112257777777888999999999999999999999999999997555554 7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHh
Q 007262 184 VLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYK 263 (611)
Q Consensus 184 ~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (611)
.+.++++|+|+..++|..++-.+..|+++..||.+.|.++..+.++++++++...+.|+.+++.+++...+.++++.+.+
T Consensus 191 ~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~ 270 (571)
T KOG1237|consen 191 GIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAF 270 (571)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred hcccCCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 007262 264 NRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTG 343 (611)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (611)
+++...+.+++.. .....+....+.++...++|+|.+..+.+. .++...++|+.|+.+++|+.|.+++.++++.+.
T Consensus 271 k~~~~~~~~~~~~-~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~---~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~ 346 (571)
T KOG1237|consen 271 KRKAVVSLDPEEL-YYDCTDSVAIEGTKPFRFLDKAALKTSDDL---KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTT 346 (571)
T ss_pred HHhccCCCcchhc-cccccccccccCCcccchhhHhhccCCccc---ccccccCCccCCCceehhhhhhhhhhhHHHHHH
Confidence 9887776553222 122222334444667789999988766544 456667899999999999999999999999999
Q ss_pred HhHHhhhcC-CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHH
Q 007262 344 IMMSINISQ-NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLF 422 (611)
Q Consensus 344 ~~~~~~~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~ 422 (611)
+.++.++.| .+.+..|...++++.++.+++|++.++.+..+.+.+..|+.+++..|+.+|..+++..++.+.++.+|++
T Consensus 347 i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~ 426 (571)
T KOG1237|consen 347 IIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLV 426 (571)
T ss_pred HHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccch
Confidence 999999999 8888999999999996559999999999999999999999999999999999988777899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHH
Q 007262 423 LSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGL 502 (611)
Q Consensus 423 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~ 502 (611)
+..+++...+..|..|.+.+..+ ....++++.+|++++++++|++|.+..+..+|+.++++|++||+.+++++.+
T Consensus 427 ~si~sm~~aa~vE~krl~~~~~~-----~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~ 501 (571)
T KOG1237|consen 427 LSILSMAVAGIVEAKRLKTAVSL-----LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLL 501 (571)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhc-----cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHH
Confidence 99999999999998888877551 1223689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCCccccc-cCcccchhHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 007262 503 GMAVANLLASAIVSAVDDITSKGGKESWVS-SNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYGPCVD 570 (611)
Q Consensus 503 ~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~ 570 (611)
..++|+.++..++..+...+++ ..+|+. +++|.++++++||+++..+.++...+.++.++++.++.
T Consensus 502 t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~ 568 (571)
T KOG1237|consen 502 TVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDD 568 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccc
Confidence 9999999999999988876644 458999 99999999999999999999999999999888866543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=329.43 Aligned_cols=464 Identities=17% Similarity=0.258 Sum_probs=350.3
Q ss_pred hhccCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhC----CChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchH
Q 007262 24 RRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYH----LGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFL 99 (611)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~ 99 (611)
....+++|.++.++.++++||+.|||+...+..|+..+++ ++++++..+.++|....++.++++||++||++|+|+
T Consensus 14 ~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~ 93 (498)
T COG3104 14 MKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR 93 (498)
T ss_pred cccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 3445688999999999999999999999999999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCC
Q 007262 100 TIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNP 179 (611)
Q Consensus 100 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~ 179 (611)
++..|.++.++|-+.++.++ ..+...++++..++++|.|+..|+..++++|++|+.+ +
T Consensus 94 tI~lGail~~iGh~~L~~~~---------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~D-p 151 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISS---------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDD-P 151 (498)
T ss_pred HHHHHHHHHHHHHHHHhccc---------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCC-c
Confidence 99999999999999988642 0146679999999999999999999999999999944 3
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCC--CCchh-----H
Q 007262 180 NNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKA--SSSLL-----T 252 (611)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~ 252 (611)
+|..+++++|++.|+|+.++|++.+++.+.+||+..|.++++.+.++++.+++.+++...... +..+. .
T Consensus 152 ----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~ 227 (498)
T COG3104 152 ----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLL 227 (498)
T ss_pred ----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhh
Confidence 278889999999999999999999999999999999999999999999999888876654321 11111 0
Q ss_pred -HHHHHHHHHHhhcccCCCCCCcccccccccCCcccccCchhh-hhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHH
Q 007262 253 -GFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLR-FLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEEL 330 (611)
Q Consensus 253 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (611)
.....+......- ++.... .+..+ .+....+..+.. +-.+...| ++.+ +++
T Consensus 228 ~~~~~~~~~~~~~~-----------~~~~l~-------~~~~~~~~~~~~i~~~~~-----~~~~~~~~---~~~~-~er 280 (498)
T COG3104 228 PVLGGLVVMILAAL-----------LTLLLN-------QNTFSGVLLVISILIAII-----YFAEAFRS---PKVF-DER 280 (498)
T ss_pred hhHHHHHHHHHHHH-----------HHHHHH-------HHHHHHHHHHHHHHHHHH-----HHHHHhcc---CccH-HHH
Confidence 1111111100000 000000 00000 000000000000 00000011 1123 789
Q ss_pred HHHHHHHHHHHHhHhHHhhhcC--CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCC
Q 007262 331 KALIKVLPLWSTGIMMSINISQ--NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKP 408 (611)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~q--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~ 408 (611)
++++.+++++++.++||+++.| ++...+-.+..+++. .+++++++++|.+|++.++++.|+.+++++|+.++. +
T Consensus 281 ~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~-~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~-- 356 (498)
T COG3104 281 RRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQI-FGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-K-- 356 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccc-cceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-C--
Confidence 9999999999999999999999 444444455555553 458999999999999999999999999999888764 2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccC
Q 007262 409 VRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEF 488 (611)
Q Consensus 409 ~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~ 488 (611)
.+++..++.+|+++++.+++++...... . .++.+..+.+|+++.++++++||.+..|++.+++++.+
T Consensus 357 -~ps~~~KFalGl~l~g~~fl~l~~~~~~---~---------~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~la 423 (498)
T COG3104 357 -QPSTPIKFALGLILAGLGFLILLLAGIW---F---------GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLA 423 (498)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHHHHh---h---------cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhC
Confidence 2588899999999999999888766311 0 01124679999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 007262 489 PKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYGP 567 (611)
Q Consensus 489 P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 567 (611)
|+.+.+.++|++.+.+..|+.++..+.+.... +.. ..+...+..+|+.++...++..+..+.+.++.++
T Consensus 424 P~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~~---------~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r 492 (498)
T COG3104 424 PPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TDP---------AYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNR 492 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhceecccccc-cch---------hhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999887663111 000 0011223567888888888877777766665443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=318.56 Aligned_cols=451 Identities=15% Similarity=0.189 Sum_probs=328.8
Q ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--hCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 007262 27 KGGLITMPFIIANEAFEKVASYGLVTNMILYLMKD--YHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLA 104 (611)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~ 104 (611)
.+++|.++.+++.+++|++++|++..+++.|++++ +|++..+++++.+.+.++..++++++|+++||++|||+++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 46788888899999999999999999999999988 9999999999999999999999999999999944999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchh
Q 007262 105 SFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERV 184 (611)
Q Consensus 105 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (611)
.++..++.++++++. +...++++|++.|+|.|+..|+..++++|++|+++. ++
T Consensus 86 ~~~~~~g~~~~~~~~-----------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~----~~ 138 (475)
T TIGR00924 86 GIVLMLGHFMLAMSI-----------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM----PR 138 (475)
T ss_pred HHHHHHHHHHHHhcc-----------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc----cc
Confidence 999999988887654 456688899999999999999999999999987321 24
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhH----HHHH----
Q 007262 185 LESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLT----GFAQ---- 256 (611)
Q Consensus 185 r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---- 256 (611)
|+++++++|++.|+|..++|.+++++.+.+||++.|+++++..+++.+.++..++.+++.++++++.. +..+
T Consensus 139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (475)
T TIGR00924 139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLA 218 (475)
T ss_pred ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHH
Confidence 77889999999999999999999999998999999999887666666665555544433222111100 0000
Q ss_pred ---HHHHHHhhcccCCCCCCcccccccccCCcccccCchhhhh-hhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHH
Q 007262 257 ---VAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFL-NKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKA 332 (611)
Q Consensus 257 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (611)
.+....+......... ........ ..+........ ..+|. ....++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-------~~~~~-----~~~~~~~~ 270 (475)
T TIGR00924 219 LLAALALVFFCAWLMHHVV----------------IANILLMTVTLAVIIFFFRL-------AFKPR-----LDAVARNK 270 (475)
T ss_pred HHHHHHHHHHHHHHHhccH----------------HHHHHHHHHHHHHHHHHHHH-------HHhcc-----CCHHHHhH
Confidence 0000001000000000 00000000 00000000000 00010 01122344
Q ss_pred HHHHHHHHHHhHhHHhhhcC--CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCC
Q 007262 333 LIKVLPLWSTGIMMSINISQ--NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVR 410 (611)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~q--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~ 410 (611)
....+++++..+++|+.+.| +++.+++...++.+. .++++|++.++++|++.+++++|+.++++.++.+| ...
T Consensus 271 ~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~-~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~----~~~ 345 (475)
T TIGR00924 271 MYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEM-LGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK----GKD 345 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC----CCC
Confidence 44577788888999999999 556666766677766 46889999999999999999999988766555544 122
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCc
Q 007262 411 LGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPK 490 (611)
Q Consensus 411 ~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~ 490 (611)
++...++.+|+++.++++++++.... ... +....+++|+++++++.++||.+..|..++++++.+|+
T Consensus 346 ~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~---------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~ 412 (475)
T TIGR00924 346 PTTPLKFTLGMLFCGASFLTFAASIW----FAD---------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ 412 (475)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHh----hcC---------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence 46777889999999999988876521 100 11246899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 007262 491 SMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYG 566 (611)
Q Consensus 491 ~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 566 (611)
++||+++|++.+...+|+.+++.+.....+.. + +..+|...++.+++..++++++.|..+
T Consensus 413 ~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 413 RLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ------G----------VTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c----------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877643211 1 256777778888877777777766543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=316.49 Aligned_cols=459 Identities=14% Similarity=0.197 Sum_probs=323.7
Q ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007262 27 KGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASF 106 (611)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 106 (611)
++|||.++.+++.+++|++++|++..+++.|+++++|++..+++++.+.+.....+.++++|+++||++||||++.++.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999994499999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhh
Q 007262 107 CSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLE 186 (611)
Q Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (611)
++.++.+++.++.+ ....++++|+++++|.|+..|+..++++|++|+++ ++|+
T Consensus 90 ~~~~g~~~~~~~~~----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~-----~~~~ 142 (489)
T PRK10207 90 VLAIGYFMTGMSLL----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD-----PRLD 142 (489)
T ss_pred HHHHHHHHHHHhcc----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc-----hhhh
Confidence 99999999887541 12346688999999999999999999999998821 3457
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCcccccc--CCCCchhH--HHHH----HH
Q 007262 187 SFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKL--KASSSLLT--GFAQ----VA 258 (611)
Q Consensus 187 ~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~----~~ 258 (611)
+.++++|++.|+|..++|.+++++.++.|||+.|+++.+..+++++.+...++.+++. ++++++.+ .... ..
T Consensus 143 ~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~ 222 (489)
T PRK10207 143 GAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSV 222 (489)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHH
Confidence 7899999999999999999999999999999999997766665555555555444332 22221111 1100 00
Q ss_pred --HHHHhhcccCCCCCCcccccccccCCcccccCchhhh-hhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHH
Q 007262 259 --VVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRF-LNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIK 335 (611)
Q Consensus 259 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (611)
........ +. . +...+ +.......... --+...+ .+...+++.+.
T Consensus 223 ~~~~~~~~~~-~~---------------~-----~~~~~~~~~~~~i~~~~----------f~~~~~~-~~~~~r~r~~~ 270 (489)
T PRK10207 223 VMIFVCAWLM-HN---------------V-----EVANLVLIVLSIVVTII----------FFREAFK-LDKTGRNKMFV 270 (489)
T ss_pred HHHHHHHHHH-hh---------------h-----hHHHHHHHHHHHHHHHH----------HHHHHhc-CCHHHHHHHHH
Confidence 00000000 00 0 00000 00000000000 0000000 01123455555
Q ss_pred HHHHHHHhHhHHhhhcC--CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCCh
Q 007262 336 VLPLWSTGIMMSINISQ--NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGV 413 (611)
Q Consensus 336 ~~~l~~~~~~~~~~~~q--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~ 413 (611)
.+.++...+.+|.++.| ....++.....+... .++.++++.++++|++.+++..|+.+++.+++. +|+..+++
T Consensus 271 ~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~-~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~----~r~~~~~~ 345 (489)
T PRK10207 271 AFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEI-LGFSINPVSFQALNPFWVVVASPILAGIYTHLG----SKGKDLSM 345 (489)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHhccccc-cceEECHHHHHhHhHHHHHHHHHHHHHHHHHHh----hCCCCCCc
Confidence 66667778889999998 333333333344444 467788899999999999999999887655443 34334688
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhh
Q 007262 414 KLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMS 493 (611)
Q Consensus 414 ~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 493 (611)
..++.+|++++++++++++..+.. .. +. ....+.+|+++.+++.++||.+..++.++++++.+|++++
T Consensus 346 ~~k~~~G~~l~~~~~~~~~~~~~~---~~------~~---~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~ 413 (489)
T PRK10207 346 PMKFTLGMFLCSLGFLTAAAAGMW---FA------DA---QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLM 413 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hc------CC---CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHH
Confidence 899999999999888766543210 00 00 0135788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 007262 494 SIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYGP 567 (611)
Q Consensus 494 g~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 567 (611)
|.++|++++.+++|+.++..+...+.. . .+..++. ...+.|..+|..+++.++++.++++++.|+.++
T Consensus 414 g~~~g~~~l~~~ig~~lg~~l~~~~~~-~-~~~~~~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~ 481 (489)
T PRK10207 414 GFILGMWFLTQAAAFLLGGYVATFTAV-P-DNITDPL----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNR 481 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-c-cccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888765421 1 0000000 001235778888888888888888777766544
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=308.03 Aligned_cols=463 Identities=18% Similarity=0.228 Sum_probs=326.0
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
+|++.++.+++.++++++.+|++..+++.|+++++|++..+++.+.+.+.....++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 37888999999999999999999999999999999999999999999999999999999999999977999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
..++.+++.... .+...++++..+..+|.|...++..++++|++|+++ ++|.+
T Consensus 86 ~~lg~lll~~~~----------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~-----~~R~s 138 (493)
T PRK15462 86 MAIGHVVLGASE----------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD-----PRRDG 138 (493)
T ss_pred HHHHHHHHHHhh----------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCC-----ccccc
Confidence 998877665322 012234555566778888888999999999999822 36888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCC-CCchh--HHH----HHHHHH
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKA-SSSLL--TGF----AQVAVV 260 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~----~~~~~~ 260 (611)
+++++|...|+|+.++|.+++++.+.+||++.|.++++.++++++.++..++.+.+... +.++. ++. ...+..
T Consensus 139 gf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (493)
T PRK15462 139 GFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV 218 (493)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887777776666655544432210 01111 000 000000
Q ss_pred H------HhhcccCCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHH
Q 007262 261 A------YKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALI 334 (611)
Q Consensus 261 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (611)
. +..... . + +. ....+.......-. .--+........+++|++.
T Consensus 219 ~~~~~~~~~~~~~----------~---~-----~~--~~~~~~~~~~~~~~----------~~~~~~~~~~~~~er~r~~ 268 (493)
T PRK15462 219 LLVATPALITVLF----------W---K-----EW--SVYALIVATIIGLG----------VLAKIYRKAENQKQRKELG 268 (493)
T ss_pred HHHHHHHHHHHHH----------H---H-----HH--HHHHHHHHHHHHHH----------HHHHHHHhcCCHHHHhhHH
Confidence 0 000000 0 0 00 00000000000000 0000000001235688888
Q ss_pred HHHHHHHHhHhHHhhhcC--CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCC
Q 007262 335 KVLPLWSTGIMMSINISQ--NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLG 412 (611)
Q Consensus 335 ~~~~l~~~~~~~~~~~~q--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~ 412 (611)
..+++++..+.||..|.| ++..++..+..|++. .++++|+++++++|++.++++.|+..+++.++.+| +| .++
T Consensus 269 ~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~-~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~--~~--~~s 343 (493)
T PRK15462 269 LIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDM-FGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG--NR--TVR 343 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchh-cceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC--CC--CCC
Confidence 999999999999999999 666566677788877 58999999999999999999999999887554432 22 357
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchh
Q 007262 413 VKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSM 492 (611)
Q Consensus 413 ~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 492 (611)
...++.+|+++++++++++...... ...+ ...+.+|++..+++.++||.+..|..++.+.+.+|++.
T Consensus 344 ~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~---------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~ 410 (493)
T PRK15462 344 IWGKFALGLGLMSAGFCILTLSARW----SAMY---------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV 410 (493)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh----cCCC---------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH
Confidence 8888999999999999888665311 0001 13688999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHH--HHHHHHHhhccCccc
Q 007262 493 SSIAASLFGLGM-AVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVN--LVYFLVCSWAYGPCV 569 (611)
Q Consensus 493 rg~~~g~~~~~~-~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~--~~~~~~~~~~~~~~~ 569 (611)
||+.+|++.+.. .+|+.++..+...... .+..+-.....+..+|..+|..++..+++. ++.+..+++..|.+.
T Consensus 411 ~g~~mg~w~l~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (493)
T PRK15462 411 TGVLTGIYMLLSGAIANYLAGVIADQTSQ----ASFDASGAINYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFRN 486 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999998754 6888888777665421 100000000001224667888877766655 444455555555543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=304.21 Aligned_cols=457 Identities=16% Similarity=0.223 Sum_probs=318.2
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
++++.++.+++.++++++++|++..+++.|+++++|++.++++++.+.+.......++++|+++||++|||+++.++.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 56777888899999999999999999999999999999999999998888777777889999999944999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
+.++.++++++. .+...++++|+++|+|.|...++..++++|++|+++ ++|.+
T Consensus 98 ~~ig~~l~~~~~----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~-----~~~~~ 150 (500)
T PRK09584 98 LAIGYALVAWSG----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD-----PRLDG 150 (500)
T ss_pred HHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc-----hhhhh
Confidence 999988887643 134557788999999999999999999999998721 34556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCcccccc--CCCCchhH--HH----HHHHH
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKL--KASSSLLT--GF----AQVAV 259 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~----~~~~~ 259 (611)
+++++|++.++|..++|.+++++.+++||++.|++.++..+++++.++..++.+++. +++.++.+ .. .....
T Consensus 151 ~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (500)
T PRK09584 151 AFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVA 230 (500)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHH
Confidence 789999999999999999999999999999999998876666655554444333322 12111111 10 01100
Q ss_pred HHHhhcccCCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 007262 260 VAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPL 339 (611)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 339 (611)
........ ....+ . ......+........ .+.........++++.+..+.+
T Consensus 231 ~~~~~~~~----------~~~~~---~--~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 281 (500)
T PRK09584 231 LIAIATWL----------LHNQE---I--ARMALGVVALGIVVI--------------FGKEAFAMKGAARRKMIVAFIL 281 (500)
T ss_pred HHHHHHHH----------Hhcch---H--HHHHHHHHHHHHHHH--------------HHHHHhhcCHHHHHHHHHHHHH
Confidence 10000000 00000 0 000000000000000 0000000122345666666777
Q ss_pred HHHhHhHHhhhcC-Cchhhhhh-hcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHH
Q 007262 340 WSTGIMMSINISQ-NSFPLLQA-SSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRM 417 (611)
Q Consensus 340 ~~~~~~~~~~~~q-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i 417 (611)
++..+.+|..+.| ++....+. ...+.+. .++.++++.++++|++.+++++|+.+++.. |+.+| ++...++
T Consensus 282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~-~g~~i~~~~~~s~n~i~iil~~p~~~~~~~----~l~~r---~~~~~~~ 353 (500)
T PRK09584 282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSI-LGIAVEPEQYQALNPFWIMIGSPILAAIYN----KMGDR---LPMPHKF 353 (500)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhccccc-cceEECHHHHHHHhHHHHHHHHHHHHHHHH----HhCcC---CCcHHHH
Confidence 7888999999999 55544333 3344444 467788999999999999999999887653 44333 3678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHH
Q 007262 418 GIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAA 497 (611)
Q Consensus 418 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~ 497 (611)
.+|++++++++++++....+ .. +...++.+|+++.+++.++||++..|...+++.+.+|+++||+++
T Consensus 354 ~~G~~l~~l~f~~l~~~~~~----~~---------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~ 420 (500)
T PRK09584 354 AIGMVLCSGAFLVLPLGAKF----AN---------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIM 420 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cC---------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHH
Confidence 99999999999888765411 00 112467889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 007262 498 SLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYGP 567 (611)
Q Consensus 498 g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 567 (611)
|++.+...+|+.++..+...+.. .....++. ...+.+..+|..+++++++.++++++..++.++
T Consensus 421 g~~~l~~a~g~~~~g~~~~~~~~--~~~~~~~~----~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k 484 (500)
T PRK09584 421 GSWFLTTAGAALIAGYVANLMAV--PDNVTDPL----MSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR 484 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--ccccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998999988877653210 00000000 011235678888888877777777666665443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-27 Score=264.73 Aligned_cols=333 Identities=26% Similarity=0.439 Sum_probs=269.2
Q ss_pred HHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 007262 45 VASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKV 124 (611)
Q Consensus 45 ~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~ 124 (611)
+++||+.+.+..|+.+.+|++.+++..+...+.....+.++++|+++|+++||++++.++.++..+|..++++++ .|..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~~~~ 79 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-IPSS 79 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence 468999999999999999999999999999999999999999999999999999999999999999998887654 2210
Q ss_pred CCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHH
Q 007262 125 KPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIAL 204 (611)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~ 204 (611)
.........+++..+.++|.|+..|+..++.+|++++.+ ++.|.++++++|+++|+|+.+++
T Consensus 80 --------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~----~~~~~s~F~~fY~~iNiGSlis~ 141 (654)
T TIGR00926 80 --------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ----LSLRSRFFSFFYFAINAGSLIST 141 (654)
T ss_pred --------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 001133456788889999999999999999999998621 15689999999999999999999
Q ss_pred HHHHHhhcc-------ccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCCCCCCcccc
Q 007262 205 TAIVYIQDH-------LGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWC 277 (611)
Q Consensus 205 ~~~~~l~~~-------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (611)
++.+++.+. .+|...|.+++++++++++++...+++++..++.+++...+.++++.+.+++.......
T Consensus 142 ~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~----- 216 (654)
T TIGR00926 142 IITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH----- 216 (654)
T ss_pred HHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-----
Confidence 999999744 36999999999999999998888888887777777777777777777766542211100
Q ss_pred cccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhhhcC-Cchh
Q 007262 278 YHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQ-NSFP 356 (611)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q-~~~~ 356 (611)
....|++.+.... .+++++++|++++.+++++...++|.++.| .+.+
T Consensus 217 -------------~~~~~ld~a~~~~-------------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~ 264 (654)
T TIGR00926 217 -------------WPLHWLDYAKDKH-------------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRW 264 (654)
T ss_pred -------------cchhHHHHhcccc-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 0123444432211 124678899999999999999999999999 7776
Q ss_pred hhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007262 357 LLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVEN 436 (611)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~ 436 (611)
..|...++.+. +++.+++..++.+|++.++++.|+++..++|..+|.+.+ +++..++.+|++++++++++++..+.
T Consensus 265 ~~qa~~m~~~l-~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~ 340 (654)
T TIGR00926 265 TLQATRMDGDV-GGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQL 340 (654)
T ss_pred HHHHHHhcCcc-CCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78887777766 467889999999999999999999998888887765332 58899999999999999999888864
Q ss_pred H
Q 007262 437 I 437 (611)
Q Consensus 437 ~ 437 (611)
.
T Consensus 341 ~ 341 (654)
T TIGR00926 341 K 341 (654)
T ss_pred H
Confidence 4
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=224.96 Aligned_cols=372 Identities=15% Similarity=0.079 Sum_probs=239.2
Q ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007262 30 LITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSL 109 (611)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 109 (611)
|..++.+.+..++.....|. ...+.+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFV-PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHH-HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence 43344444444444333332 22334567889999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
++.+.+.+++ +++.++++|+++|++.+...+...+++.|++|+ ++|++++
T Consensus 86 ~~~~~~~~~~-----------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~ 135 (390)
T PRK03545 86 ASHVLSALAW-----------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPA-------GKKAQAL 135 (390)
T ss_pred HHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-------hhhhhHH
Confidence 9988888766 688899999999999999999999999999998 8899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCC
Q 007262 190 GWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLAL 269 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (611)
+++....++|..++|.+++.+.+..|||+.|++.+++.++..+......|+.+++ ++++.++. .
T Consensus 136 g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~----~---------- 199 (390)
T PRK03545 136 SLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSLKSL----P---------- 199 (390)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchHHHH----H----------
Confidence 9999999999999999999999989999999998776655544433322221110 00000000 0
Q ss_pred CCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHH-HHHHHHhHhHHh
Q 007262 270 PPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKV-LPLWSTGIMMSI 348 (611)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 348 (611)
+..++ +.++.. ...+......+.
T Consensus 200 -------------------------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~ 223 (390)
T PRK03545 200 -------------------------------------------------------LLFRR-PALVSLYLLTVVVVTAHFT 223 (390)
T ss_pred -------------------------------------------------------HHHhC-cHHHHHHHHHHHHHHHHHH
Confidence 00000 111111 111111111111
Q ss_pred hhcC-CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHH
Q 007262 349 NISQ-NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMG 427 (611)
Q Consensus 349 ~~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~ 427 (611)
.+.. ..+ +......+.. ..+.+.....+..++...+..+ +.+|.++ +.+..+..+..++
T Consensus 224 ~~~~~~~~-l~~~~g~s~~-------~~~~~~~~~~~~~~~g~~~~g~----l~dr~~~--------~~~~~~~~~~~~~ 283 (390)
T PRK03545 224 AYSYIEPF-VQQVAGLSEN-------FATLLLLLFGGAGIIGSVLFSR----LGNRHPS--------GFLLIAIALLLVC 283 (390)
T ss_pred HHHHHHHH-HHHhcCCCcc-------HHHHHHHHHHHHHHHHHHHHHH----Hhhccch--------hHHHHHHHHHHHH
Confidence 1111 111 1111111110 1122222233333344443333 3334321 2244555555544
Q ss_pred HHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHH
Q 007262 428 MVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVA 507 (611)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg 507 (611)
........ .+.+.++...++.|++.....+.....+.+..| +.|+.++|+++....+|
T Consensus 284 ~~~l~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g 341 (390)
T PRK03545 284 LLLLLPAA---------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIG 341 (390)
T ss_pred HHHHHHHh---------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHH
Confidence 44332221 134555566677788877777777788888777 57899999999999999
Q ss_pred HHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 508 NLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSW 563 (611)
Q Consensus 508 ~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 563 (611)
..+|+.+.+.+.+..+ +...|++.+.+.++++++++...+
T Consensus 342 ~~~G~~~~G~~~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 342 IGAGALLGNQVSLHLG----------------LSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHhccC----------------hhHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999998876442 356788888888888877766654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-23 Score=219.37 Aligned_cols=377 Identities=13% Similarity=0.056 Sum_probs=245.0
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
+.+|.+..+.+..++..+........++.|+++++|.|..+.+++.+++.++..++.++.|+++||+ |||+++.++.++
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~ 90 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCG 90 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHH
Confidence 3444566667777777777777778889999999999999999999999999999999999999997 999999999988
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
..++.+.+.++..... ....++..+++.|+++|+|.+...+...+++.|..|+ ++|++
T Consensus 91 ~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~ 148 (399)
T PRK05122 91 CALSGLLYLLAGLLAA---------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGA-------LHTGR 148 (399)
T ss_pred HHHHHHHHHHhhhhhc---------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcCh-------hhhcc
Confidence 8877666554321000 0011456789999999999999999999999999998 88899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhccc
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKL 267 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (611)
++++.....++|..+++.+++++.+.+||+..+++..++.++..++. ++ .++.++++++
T Consensus 149 ~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~----------------- 207 (399)
T PRK05122 149 VISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVKGE----------------- 207 (399)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCCcc-----------------
Confidence 99998888899999999999999999999998877655443332211 11 1110000000
Q ss_pred CCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHH-HHhHhH
Q 007262 268 ALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLW-STGIMM 346 (611)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ 346 (611)
+.++ .+..|..+...... .....+
T Consensus 208 ------------------------------------------------~~~~-------~~~~~~~~~~~~~~~~~~~~~ 232 (399)
T PRK05122 208 ------------------------------------------------RLPF-------RRVLGRVWPYGMGLALASIGF 232 (399)
T ss_pred ------------------------------------------------chhH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00011111111111 111111
Q ss_pred HhhhcC-CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHH
Q 007262 347 SINISQ-NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSC 425 (611)
Q Consensus 347 ~~~~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~ 425 (611)
...... +.+ . ... +. ...+.......+..++..++..+ +.+|.+ +++.+..+.++++
T Consensus 233 ~~~~~~~~~~-~-~~~----~~-----~~~~~~~~~~~~~~~~~~~~~g~----l~~r~~-------~~~~~~~~~~~~~ 290 (399)
T PRK05122 233 GTIATFITLY-Y-AAR----GW-----DGAALALTLFGVAFVGARLLFGN----LINRLG-------GLRVAIVSLLVEI 290 (399)
T ss_pred HHHHHHHHHH-H-HHc----cc-----ccchHHHHHHHHHHHHHHHHHHH----HHHHhc-------cHHHHHHHHHHHH
Confidence 111111 111 1 111 11 00111112222333333333333 344432 2344566666666
Q ss_pred HHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHH
Q 007262 426 MGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMA 505 (611)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 505 (611)
+++++....+ +.+.++...++.+++.+..++.....+.+..|++.||+++|+++....
T Consensus 291 ~~~~~~~~~~----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 348 (399)
T PRK05122 291 LGLLLLWLAP----------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLD 348 (399)
T ss_pred HHHHHHHHhc----------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6665554432 344455667888888888888888888889999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 506 VANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSW 563 (611)
Q Consensus 506 lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 563 (611)
+|..+++.+.+.+.+..+ ++..|++.+++.+++++..+++.+
T Consensus 349 ~g~~~~~~~~g~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 349 LSLGITGPLAGLVASWFG----------------YPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHHHHHcC----------------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999888888765331 367777777777777666555433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-23 Score=219.00 Aligned_cols=174 Identities=16% Similarity=0.099 Sum_probs=146.2
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
++|..+....+..+++....+..-. ..+.+.+++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 89 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGV-AAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVAL 89 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHH
Confidence 4555555556666776666655544 34456778999999999999999999999999999999997 999999999988
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
..++.+++.++. +++.+++.|++.|++.+...+...+++.|.+|+ ++|++
T Consensus 90 ~~~~~~~~~~~~-----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~ 139 (406)
T PRK11551 90 FGLFSLATAQAW-----------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP-------RLRGT 139 (406)
T ss_pred HHHHHHHHHHhc-----------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH-------HHHHH
Confidence 888887777654 677889999999999999999999999999998 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLL 233 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (611)
++++.+...++|..+++.+++.+.+..+|++.|++.+++.++..++
T Consensus 140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK11551 140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888899999998876654444433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-22 Score=222.65 Aligned_cols=392 Identities=13% Similarity=0.061 Sum_probs=239.8
Q ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007262 30 LITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSL 109 (611)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 109 (611)
|..+..+++..++..+-.-.+.+ ..+.+.+++|.+..+.+|+.+.+.++..++.++.|+++||+ |||+++.++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~-a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHV-AAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 34444445555555444443433 44556788999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhccc-CCCCCCCcchhhhhH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQL-DRKDNPNNERVLESF 188 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~ 188 (611)
++.++++++. +++.++++|+++|+|.++..|.....+.+.+ |+ ++|+++
T Consensus 83 ~~~~~~~~a~-----------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~-------~~r~~~ 132 (495)
T PRK14995 83 LASLAAAFSP-----------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEE-------KQRNMA 132 (495)
T ss_pred HHHHHHHHcC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-------HHHHHH
Confidence 9999998866 7888999999999999999998888888877 45 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchh-HHHHH-----HHHHHH
Q 007262 189 FGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLL-TGFAQ-----VAVVAY 262 (611)
Q Consensus 189 ~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~ 262 (611)
++++....++|..++|.+++++.+++|||+.|++...+.++.+++.....|+.++++.+..+. ..+.. .+....
T Consensus 133 ~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~ 212 (495)
T PRK14995 133 LGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSA 212 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987766665554444333322111111111 11000 000111
Q ss_pred hhcccCCCCCCcccccccccCCcccccCchhhh----hhh----hhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHH
Q 007262 263 KNRKLALPPPNASWCYHRQKDSLLIVPTSKLRF----LNK----ACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALI 334 (611)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (611)
++.. ... ....... ... .....+. ....|.... +..++ +...
T Consensus 213 ~~~~----~~~---------------~~~~~~~~~~~~~~~~l~~f~~~e~--------~~~~p~~~~--~lf~~-~~~~ 262 (495)
T PRK14995 213 KTAL----KGF---------------LSLWVTSLTLLTGALLLGLFIRTQL--------AASRPMIDM--RLFTH-RIIL 262 (495)
T ss_pred Hhcc----ccC---------------CchHHHHHHHHHHHHHHHHHHHHHh--------cCCCCCcCH--HHhCC-cccH
Confidence 1100 000 0000000 000 0000000 001222110 01111 1111
Q ss_pred HHHHHHHHhHhHHhhhcC-CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCCh
Q 007262 335 KVLPLWSTGIMMSINISQ-NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGV 413 (611)
Q Consensus 335 ~~~~l~~~~~~~~~~~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~ 413 (611)
......++....+..+.. .+.+++.....+. ...+.......+...+..++.++ +.+|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~-------~~ag~~~~~~~~~~~~~~~~~g~----l~~r~g~------- 324 (495)
T PRK14995 263 SGVVMAMTAMITLVGFELLMAQELQFVHGLSP-------LEAGMFMLPVMVASGFSGPIAGI----LVSRLGL------- 324 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHcCc-------
Confidence 111111111111111111 1111222212111 11223333333444445555444 3455432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhh
Q 007262 414 KLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMS 493 (611)
Q Consensus 414 ~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 493 (611)
++.+..|+++.+++.+.+.... ...+.+......++.|+|.++..++....+.+.+|++.+
T Consensus 325 ~~~~~~g~~~~~~~~~~l~~~~-------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~ 385 (495)
T PRK14995 325 RLVATGGMALSALSFYGLAMTD-------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKA 385 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc-------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhc
Confidence 3345667777777665554432 112344455667888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007262 494 SIAASLFGLGMAVANLLASAIVSAVDD 520 (611)
Q Consensus 494 g~~~g~~~~~~~lg~~l~~~i~~~i~~ 520 (611)
+.+++++++.+.+|+.+|+.+.+.+.+
T Consensus 386 g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 386 AAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888764
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-23 Score=221.24 Aligned_cols=390 Identities=14% Similarity=0.014 Sum_probs=243.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 007262 37 IANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLW 116 (611)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~ 116 (611)
+...++..+........+|.+. ++++.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~~ 100 (417)
T PRK10489 23 FIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGLA 100 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHHH
Confidence 3345555555444445555554 56788999999999999999999999999999997 999999988887777766554
Q ss_pred HhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHH
Q 007262 117 LTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATS 196 (611)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 196 (611)
+..... ..+++.+++.|++.|++.+...++..+++.|.+|+ ++|+++.++.+...
T Consensus 101 ~~~~~~------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 155 (417)
T PRK10489 101 LNAFLP------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR-------ENLMQAGAITMLTV 155 (417)
T ss_pred HHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH-------HHHHHHHHHHHHHH
Confidence 321000 11567788899999999998889999999999998 88999999999999
Q ss_pred HHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccC-CCCchhHHHHHHHHHHHhhcccCCCCCCcc
Q 007262 197 AIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLK-ASSSLLTGFAQVAVVAYKNRKLALPPPNAS 275 (611)
Q Consensus 197 ~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (611)
++|..++|.+++.+.+..+|++.|++.++..+++.++.+..++ .+.++ .+.++..+.
T Consensus 156 ~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~--------------------- 213 (417)
T PRK10489 156 RLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPA-LPPPPQPREHPLRSL--------------------- 213 (417)
T ss_pred hHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCC-CCCCCcccccchHHH---------------------
Confidence 9999999999999998889999998877665555444332221 11000 000000000
Q ss_pred cccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhhhcCCch
Q 007262 276 WCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSF 355 (611)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~ 355 (611)
.+ .+ +.....+.+......................
T Consensus 214 --------------------~~--------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 248 (417)
T PRK10489 214 --------------------LA--------------------GF-----RFLLASPVVGGIALLGGLLTMASAVRVLYPA 248 (417)
T ss_pred --------------------HH--------------------HH-----HHHHcChHHHHHHHHHHHHHHHHhHHHhhHH
Confidence 00 00 0000011111111111111111110011111
Q ss_pred hhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007262 356 PLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVE 435 (611)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~ 435 (611)
+.......+. ...+.+.....+..++...+.++ +.+|. +..+.+..+.++.++++++.+..+
T Consensus 249 ~~~~~~g~~~-------~~~g~~~~~~~~g~~ig~~~~~~----l~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~ 310 (417)
T PRK10489 249 LADEVWQMGA-------AQIGLLYAAVPLGAALGALTSGW----LAHSA-------RPGLLMLLSTLGSFLAVGLFGLMP 310 (417)
T ss_pred HHHhccCCCh-------hHhHHHHHHHHHHHHHHHHHHHH----hhhcc-------CcchHHHHHHHHHHHHHHHHHccc
Confidence 1111111110 11223333333344444443333 22321 223345566666666665554321
Q ss_pred HHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007262 436 NIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIV 515 (611)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~ 515 (611)
+++......++.+++.+...+...+++.+.+|++.||+++|+++....+|..+++.+.
T Consensus 311 ----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 311 ----------------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred ----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 3444555667778888877788888999999999999999999999999999999999
Q ss_pred HhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccC
Q 007262 516 SAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVG 576 (611)
Q Consensus 516 ~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 576 (611)
+.+.+..+ +...++..+++.++..++.+...+++|+.++||++++
T Consensus 369 G~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 369 GGLGAMMT----------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred HHHHHHhc----------------hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 99876542 2355666677777767777777788888887776543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-22 Score=220.22 Aligned_cols=176 Identities=10% Similarity=0.053 Sum_probs=150.7
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
..+.+.+..++..+..+.+...+|.+.+ ++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.+++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Confidence 4566666777777777777777777765 6999999999999999999999999999999997 9999999998888888
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
.+++.++. +.+.++++|+++|++.+...|...+++.|.+|+ ++|++.+++
T Consensus 89 ~~~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 138 (471)
T PRK10504 89 SLFCALSG-----------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR-------EQYMAAMTF 138 (471)
T ss_pred HHHHHHhC-----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH-------HHHHHHHHH
Confidence 87776654 577789999999999999999999999999998 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCc
Q 007262 192 YYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASP 239 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (611)
.+...++|..++|.+++++.+..|||+.|++..+...+..+......+
T Consensus 139 ~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 139 VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999887766655554444433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-22 Score=225.86 Aligned_cols=157 Identities=15% Similarity=0.093 Sum_probs=133.8
Q ss_pred hhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 007262 49 GLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSP 128 (611)
Q Consensus 49 ~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 128 (611)
.++..+.+++.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++++..++.++++++.
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~--------- 253 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ--------- 253 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 3455666778889999999999999999999999999999999997 999999999999998888888765
Q ss_pred CCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007262 129 CNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIV 208 (611)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~ 208 (611)
+++.++++|++.|+|.|+..+...++++|.+|+ +.|+..++++.....+|.++++.++.
T Consensus 254 --------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~-------~~Rg~~~g~~~~~~~iG~ila~~la~ 312 (742)
T TIGR01299 254 --------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ-------EKRGEHLSWLCMFWMIGGIYAAAMAW 312 (742)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999 99999999999888999999887765
Q ss_pred Hhhcc-------------ccchhhhHHHHHHHHHHHHHHHH
Q 007262 209 YIQDH-------------LGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 209 ~l~~~-------------~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
.+... .+||+.|++.++..++.+++.++
T Consensus 313 ~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 313 AIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 55432 36899888877666555544433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-22 Score=216.39 Aligned_cols=372 Identities=12% Similarity=0.110 Sum_probs=244.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 007262 34 PFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMF 113 (611)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~ 113 (611)
+.++..+++...+.+.+.++++.|+++++|++..+.|.+.++..+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 4456788889999999999999999999999999999999999999999999999999997 999999999999999888
Q ss_pred HHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHH
Q 007262 114 LLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYY 193 (611)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (611)
++.+++ +.+.+++.|++.|++.+...|...+++.|.+|+ ++|++++++.+
T Consensus 92 ~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~a~~~~~ 141 (400)
T PRK11646 92 TMAIAH-----------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP-------HQRGRFFSLLM 141 (400)
T ss_pred HHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHH
Confidence 887654 677889999999999999999999999999998 89999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCCCCCC
Q 007262 194 ATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPN 273 (611)
Q Consensus 194 ~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (611)
...++|..++|.+++++. .+||++.|++.+...++..++.....++.+. ++..++..+
T Consensus 142 ~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~-------------------- 199 (400)
T PRK11646 142 MQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPVRE-------------------- 199 (400)
T ss_pred HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhhHH--------------------
Confidence 999999999999999998 6799999998776655544333332222110 000000000
Q ss_pred cccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHH-HHhHhHHhhhcC
Q 007262 274 ASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLW-STGIMMSINISQ 352 (611)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~q 352 (611)
.| ....++ +.++...... ......+.....
T Consensus 200 --------------------------------------------~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 230 (400)
T PRK11646 200 --------------------------------------------GM----TRVLRD-KRFVTYVLTLTGYYMLAVQVMLM 230 (400)
T ss_pred --------------------------------------------HH----HHHHcC-chHHHHHHHHHHHHHHHHHHHHh
Confidence 00 000011 1111111111 111111110011
Q ss_pred CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 007262 353 NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSG 432 (611)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~ 432 (611)
.+.+. +....+. ...+.+..+..+..+..... ..+..+| | .+..+.+..+.++.++++.+++
T Consensus 231 ~p~~~-~~~~~~~-------~~~g~l~~~~~~~~~~~~~~----~~~~~~~---r---~~~~~~~~~~~~~~~~~~~~l~ 292 (400)
T PRK11646 231 LPIMV-NDIAGSP-------SAVKWMYAIEACLSLTLLYP----IARWSEK---R---FRLEHRLMAGLLIMSLSMFPIG 292 (400)
T ss_pred hhhhH-HhhcCCc-------hHHHHHHHHHHHHHHHHHHH----HHHHHHH---h---cchhHHHHHHHHHHHHHHHHHH
Confidence 11111 1110000 11122222222222222111 1212222 1 1333446677777777766665
Q ss_pred HHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Q 007262 433 LVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLAS 512 (611)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~ 512 (611)
..+ +.+.++...++.+++.+...|...+.+.+.+|++.||+++|+.++...+|..+|+
T Consensus 293 ~~~----------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~ 350 (400)
T PRK11646 293 MVS----------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGY 350 (400)
T ss_pred Hhh----------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcc
Confidence 442 2334444556678888888899999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHH
Q 007262 513 AIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFL 559 (611)
Q Consensus 513 ~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~ 559 (611)
.+.+.+.+..+.. +.....|+..+.+.+++.+...
T Consensus 351 ~l~G~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 351 IGGGWLFDLGKAL------------NQPELPWMMLGIIGLITLLALY 385 (400)
T ss_pred cchHHHHHHHhhc------------CCcchHHHHHHHHHHHHHHHHH
Confidence 9999987754211 1113455555666666655544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-22 Score=215.16 Aligned_cols=373 Identities=13% Similarity=0.103 Sum_probs=238.3
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLL 110 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 110 (611)
+.++.+.+..++...........+|.|+++++|+|..+.+++.+++.++..+++++.|+++||+ ||||++.++.++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~ 93 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGL 93 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHH
Confidence 3455555666677777677777888899999999999999999999999999999999999997 999999998887776
Q ss_pred HHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHH
Q 007262 111 GMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFG 190 (611)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (611)
+.+...+....+. ....++..++++|+++|++.+...+...+++.|.+|+ ++|+++++
T Consensus 94 ~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~a~~ 151 (392)
T PRK12382 94 AGLAYLLAAILPV---------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGP-------KHSGKVMS 151 (392)
T ss_pred HHHHHHhhhcccc---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-------cccchhhh
Confidence 6544332210110 0012677889999999999999999999999999998 88999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCCC
Q 007262 191 WYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALP 270 (611)
Q Consensus 191 ~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (611)
+.+.+.++|..++|.+++++.+.+||++.+.+.....++..+ ..+ +.++.+++++.
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~-------------------- 207 (392)
T PRK12382 152 WNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNG-TVRKVPAHAGE-------------------- 207 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHH-hccCCCCCccc--------------------
Confidence 999989999999999999998889999876655433222221 111 11110000000
Q ss_pred CCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHH-HHHHHHhHhHHhh
Q 007262 271 PPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKV-LPLWSTGIMMSIN 349 (611)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~ 349 (611)
+.++ .+..|..+.. +........+...
T Consensus 208 ---------------------------------------------~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~ 235 (392)
T PRK12382 208 ---------------------------------------------RPSL-------WSVVGLIWKPGLGLALQGVGFAVI 235 (392)
T ss_pred ---------------------------------------------CchH-------HHHHHHHHHhHHHHHHHHHHHhHH
Confidence 0000 0000111110 0001111111111
Q ss_pred hcCCchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHH
Q 007262 350 ISQNSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMV 429 (611)
Q Consensus 350 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~ 429 (611)
......++ +. .+. ...+.......+..++..++.++ +.+|.++| +.+..+..+.+++++
T Consensus 236 ~~~~~~~~-~~----~~~-----~~~~~~~~~~~~~~~~~~~~~g~----l~~r~g~~-------~~~~~~~~~~~~~~~ 294 (392)
T PRK12382 236 GTFVSLYF-AS----KGW-----AMAGFTLTAFGGAFVLMRVLFGW----MPDRFGGV-------KVAIVSLLVETVGLL 294 (392)
T ss_pred HHHHHHHH-Hh----cCC-----chhHHHHHHHHHHHHHHHHHHHH----HHHhcCCC-------eehHHHHHHHHHHHH
Confidence 11111101 11 111 00111122222333344444443 44554332 225556666666665
Q ss_pred HHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHH
Q 007262 430 VSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANL 509 (611)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ 509 (611)
+....+ +.+......++.+++.+...+.......+.+|++.||++.|+++....+|+.
T Consensus 295 ~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 352 (392)
T PRK12382 295 LLWLAP----------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYG 352 (392)
T ss_pred HHHHcc----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 544331 3344455667778888888888888888999999999999999999999999
Q ss_pred HHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 007262 510 LASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVC 561 (611)
Q Consensus 510 l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~ 561 (611)
+++.+.+.+.+..+ +...|.+.+++.+++.++.++.
T Consensus 353 ig~~~~g~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 353 VSGPLAGMLATSFG----------------YPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHhC----------------chHHHHHHHHHHHHHHHHHHhh
Confidence 99999998876442 3667888777777777665544
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-22 Score=204.34 Aligned_cols=377 Identities=14% Similarity=0.111 Sum_probs=252.1
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
..|..++.+-++.++....-|.... +.+-+.+++|.|..++|++++.|.++..++.++...+.||+ .||++++..+++
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~g-LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~l 87 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVG-LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLAL 87 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHh-chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHH
Confidence 3344455555566665555555544 55667889999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
+.++.+++++++ +++.++++|++.|+..|.+++...+..++..|+ ++|++
T Consensus 88 Fi~~n~l~alAp-----------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp-------~~~~~ 137 (394)
T COG2814 88 FIVSNLLSALAP-----------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPP-------GKRGR 137 (394)
T ss_pred HHHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------cchhh
Confidence 999999999988 899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCC--CchhHHHHHHHHHHHhhc
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKAS--SSLLTGFAQVAVVAYKNR 265 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 265 (611)
++++...+.+++.++|..++.++.+.+|||..|++.+.+.+++++..+...| +++.++ ..+..+..+. +|
T Consensus 138 Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~~~~----l~-- 209 (394)
T COG2814 138 ALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRTLLRL----LR-- 209 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhHHHHH----hc--
Confidence 9999999999999999999999999999999999988888887777666555 111110 0111000000 00
Q ss_pred ccCCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHh
Q 007262 266 KLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIM 345 (611)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (611)
+.+-+...+...+....
T Consensus 210 ---------------------------------------------------------------~p~v~~~l~~t~l~~~g 226 (394)
T COG2814 210 ---------------------------------------------------------------RPGVLLGLLATFLFMTG 226 (394)
T ss_pred ---------------------------------------------------------------CchHHHHHHHHHHHHcc
Confidence 00111112222222333
Q ss_pred HHhhhcC-CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHH
Q 007262 346 MSINISQ-NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLS 424 (611)
Q Consensus 346 ~~~~~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~ 424 (611)
.+..|.+ ..+ +.+...++... .+.......+..++...+.++ +.+| ++.+.+...+.++
T Consensus 227 ~F~~ftYi~P~-L~~v~g~s~~~-------vs~~Ll~~Gv~~~~Gn~~gGr----l~dr--------~~~~~l~~~~~l~ 286 (394)
T COG2814 227 HFALYTYIRPF-LESVAGFSVSA-------VSLVLLAFGIAGFIGNLLGGR----LADR--------GPRRALIAALLLL 286 (394)
T ss_pred hhhhHHhHHHH-HHHccCCCHhH-------HHHHHHHHHHHHHHHHHHHhh----hccc--------cchhHHHHHHHHH
Confidence 3333333 222 22222221111 122222333333333333333 3333 3344455666677
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHH
Q 007262 425 CMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGM 504 (611)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~ 504 (611)
++.++.+.... .+.+..+...++++++........+....+.+ ++.++.+++++....
T Consensus 287 a~~~l~l~~~~---------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~ 344 (394)
T COG2814 287 ALALLALTFTG---------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAF 344 (394)
T ss_pred HHHHHHHHHhc---------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHH
Confidence 77776665542 23344444444455555444444444444433 466999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007262 505 AVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAY 565 (611)
Q Consensus 505 ~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 565 (611)
++|..+|..+++.+.+..+ +....++.+.+.+++.++.+...+..
T Consensus 345 nlgia~GA~lGG~v~~~~g----------------~~~~~~~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 345 NLGIALGAALGGLVLDALG----------------YAATGWVGAALLLLALLLALLSARKD 389 (394)
T ss_pred HHHHHHHHHHHHHHHHhhc----------------hHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999887532 35667777777777776665554443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-22 Score=212.67 Aligned_cols=155 Identities=14% Similarity=0.116 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 007262 51 VTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCN 130 (611)
Q Consensus 51 ~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 130 (611)
.+...+++++++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++..+++++.
T Consensus 13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~----------- 80 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG----------- 80 (399)
T ss_pred hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc-----------
Confidence 34555668889999999999999999999999999999999997 999999999999998888887765
Q ss_pred ccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007262 131 ILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYI 210 (611)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l 210 (611)
+++.++++|++.|++.+...+...+++.|.+|+ ++|++.+++.+...++|..++|.+.+++
T Consensus 81 ------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l 141 (399)
T TIGR00893 81 ------------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA-------SERATAVSIFNSAQGLGGIIGGPLVGWI 141 (399)
T ss_pred ------------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH-------HHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999 8999999999999999999999999999
Q ss_pred hccccchhhhHHHHHHHHHHHHHHHH
Q 007262 211 QDHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 211 ~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
.+..+|++.|++.++..++..++.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 142 LIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 99899999999877766555444433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-22 Score=216.50 Aligned_cols=164 Identities=10% Similarity=0.122 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 007262 35 FIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFL 114 (611)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~ 114 (611)
..++..++..+..+.+...++ .+.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~ 104 (434)
T PRK11663 27 TMYLGYALFYFTRKSFNAAMP-EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINIL 104 (434)
T ss_pred HHHHHHHHHHHhhhhHHHhhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHH
Confidence 334444444444445544444 44567999999999999999999999999999999997 9999999999999999888
Q ss_pred HHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHH
Q 007262 115 LWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYA 194 (611)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 194 (611)
+.++. +++.+++.|++.|++.|...+...+++.|++|+ ++|++++++++.
T Consensus 105 ~~~~~-----------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~-------~~rg~~~~~~~~ 154 (434)
T PRK11663 105 FGFSS-----------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR-------TERGGWWAIWNT 154 (434)
T ss_pred HHHHh-----------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH-------HHHHHHHHHHHH
Confidence 87765 677888999999999999999999999999998 899999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHH
Q 007262 195 TSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLS 230 (611)
Q Consensus 195 ~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 230 (611)
+.++|..++|.+.+++.+.+|||+.|++.++..++.
T Consensus 155 ~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 155 AHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877655443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=215.84 Aligned_cols=174 Identities=16% Similarity=0.146 Sum_probs=151.7
Q ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007262 29 GLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCS 108 (611)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 108 (611)
.+|..+.+++..++..++.+.+..+++.|+++++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence 345567777788888999999999999999999999999999999999999999999999999997 9999999999888
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhH
Q 007262 109 LLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188 (611)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (611)
.++.++..+++ +++.+++.|.+.+.+.+...+...++..|.+|+ ++|++.
T Consensus 84 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 133 (395)
T PRK10054 84 ASGFIAIPLVN-----------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSS-------TSKTKI 133 (395)
T ss_pred HHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------hHHHHH
Confidence 88887777655 567777888888888888888899999999998 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHH
Q 007262 189 FGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 189 ~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
+++.+...++|..++|.+++++.+ .+|+.+|++.+++.++..++.
T Consensus 134 ~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 134 FSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999998875 689999998877666654433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-22 Score=220.10 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=123.5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCch
Q 007262 63 HLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTA 142 (611)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (611)
|.+..+.+++.+++.++..++++++|+++||+ |||+++.++.+++.++.+.++++..+-. +....+..
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~-----------~~~~~~~~ 118 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFT-----------SIGPDNTG 118 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccc-----------cccccchh
Confidence 88999999999999999999999999999997 9999999999999888877765320000 00001112
Q ss_pred hhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------ccc
Q 007262 143 QMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQ--------DHL 214 (611)
Q Consensus 143 ~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~--------~~~ 214 (611)
....++++|+++|++.|+..+...++++|++|+ ++|++++++......+|..+++.++..+. +.+
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-------~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 191 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA-------HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD 191 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence 456788999999999999999999999999999 88999999999999999999887665443 356
Q ss_pred cchhhhHHHHHHHHHHHHHHH
Q 007262 215 GWKVGFGVPAILMVLSLLLFF 235 (611)
Q Consensus 215 gw~~~f~~~~~~~~~~~~~~~ 235 (611)
|||++|++.++..++..+..+
T Consensus 192 gWr~~f~~~~~~~~~~~~~~~ 212 (479)
T PRK10077 192 GWRYMFASEAIPALLFLMLLY 212 (479)
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 899999987766655544333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-21 Score=207.43 Aligned_cols=173 Identities=14% Similarity=0.193 Sum_probs=146.6
Q ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007262 27 KGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASF 106 (611)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 106 (611)
+..|+.+..+.+..++.....|.....++. +.+++|+++.+.++..+++.++..++.++.|+++||+ |||+++..+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~ 93 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAV 93 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHH
Confidence 345555555555545554455555555554 5678999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhh
Q 007262 107 CSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLE 186 (611)
Q Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (611)
+..++.+++.++. +++.+++.|+++|++.+...+...+++.|++|+ ++|+
T Consensus 94 ~~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~~~ 143 (394)
T PRK10213 94 LLTLSCLLVSFAN-----------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPP-------RTVP 143 (394)
T ss_pred HHHHHHHHHHHHC-----------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH-------hHHH
Confidence 9999888887755 788899999999999999999999999999998 8899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHH
Q 007262 187 SFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSL 231 (611)
Q Consensus 187 ~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~ 231 (611)
++.++...+.++|..++|.+++++.+.+|||+.|++.+++.++..
T Consensus 144 ~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 144 KALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988776554443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=207.64 Aligned_cols=157 Identities=12% Similarity=0.022 Sum_probs=126.1
Q ss_pred hhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007262 48 YGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPS 127 (611)
Q Consensus 48 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 127 (611)
+.......+.+++++|++..+.+++.+.+.++..+++++.|+++||+ |||+++..+.+....+. +...+.
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~-~~~~~~-------- 76 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAA-GRLLDP-------- 76 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH-HHHHHh--------
Confidence 34445566777889999999999999999999999999999999997 99988765544444433 222221
Q ss_pred CCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 007262 128 PCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAI 207 (611)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~ 207 (611)
.++..+++.|+++|+|.+. .+.....++|++|+ ++|++++++.+.+.++|..+++.++
T Consensus 77 --------------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~-------~~r~~a~~~~~~~~~lG~~l~~~~~ 134 (368)
T TIGR00903 77 --------------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIRE-------ERRDLVISLLSFAMYLGIIFALAAG 134 (368)
T ss_pred --------------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1578899999999999986 45666667999998 9999999999999999999999999
Q ss_pred HHhhccccchhhhHHHHHHHHHHHHHHHH
Q 007262 208 VYIQDHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 208 ~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
+++.+.+|||+.|++.+++.++..++.+.
T Consensus 135 ~~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 135 LKIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998866665554444333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=215.22 Aligned_cols=147 Identities=15% Similarity=0.179 Sum_probs=120.1
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCch
Q 007262 63 HLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTA 142 (611)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (611)
+.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++++++.++.++++++.+. ....
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~ 113 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPGS-----------------SPKS 113 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccCc-----------------ccch
Confidence 35566778999999999999999999999997 99999999999999998887765410 0011
Q ss_pred hhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc----------
Q 007262 143 QMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQD---------- 212 (611)
Q Consensus 143 ~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~---------- 212 (611)
++..++++|+++|++.|+..+..+.+++|.+|+ +.|+++.++.+....+|..+++.+...+..
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~-------~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 186 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATK-------KWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAA 186 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 367899999999999999999999999999999 999999999999999998888877654421
Q ss_pred -------------cccchhhhHHHHHHHHHHHHHH
Q 007262 213 -------------HLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 213 -------------~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
.++||+.|.+.++..++..+..
T Consensus 187 ~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~ 221 (502)
T TIGR00887 187 DEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR 221 (502)
T ss_pred ccccccccccchhcccHHHHHHHHHHHHHHHHHHH
Confidence 2479999987776655544443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=205.89 Aligned_cols=355 Identities=12% Similarity=0.016 Sum_probs=228.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 007262 37 IANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLW 116 (611)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~ 116 (611)
++..++..++.......++.|.. +++.+..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHHH
Confidence 44555555655555566666665 5899999999999999999999999999999997 999999999888888777766
Q ss_pred HhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHH
Q 007262 117 LTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATS 196 (611)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 196 (611)
++...+ ..+.+.++++|++.|++.+...+...+++.|.+|+ ++|++.+++.+...
T Consensus 83 ~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 137 (365)
T TIGR00900 83 FVALLG------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE-------EQLTQANSLSQAVR 137 (365)
T ss_pred HHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHhHHHHHH
Confidence 544111 12577889999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhH-HHHHHHHHHHhhcccCCCCCCcc
Q 007262 197 AIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLT-GFAQVAVVAYKNRKLALPPPNAS 275 (611)
Q Consensus 197 ~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 275 (611)
++|..++|.+++++.+..||++.|++.++..+++.++.+..+.+..++ ++.++.. +..+.
T Consensus 138 ~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------------ 198 (365)
T TIGR00900 138 SLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQALSNAVLRD------------------ 198 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccccccchhHHHH------------------
Confidence 999999999999999989999999887766555544333322111000 0000000 00000
Q ss_pred cccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHH-HHhHhHHhhhcC-C
Q 007262 276 WCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLW-STGIMMSINISQ-N 353 (611)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~q-~ 353 (611)
..+ .+ +.....+.+....... ............ .
T Consensus 199 -------------------~~~--------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (365)
T TIGR00900 199 -------------------TRE--------------------GI-----KFVLKNPLLRTLLLLALLFNLVFAPAIVALF 234 (365)
T ss_pred -------------------HHh--------------------HH-----HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 00 0000011121111111 111111111111 1
Q ss_pred chhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 007262 354 SFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGL 433 (611)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~ 433 (611)
+++..+....+. ...+.+.....+..++..++..+ +.+|.+ +++.+..+.++.++++++...
T Consensus 235 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 296 (365)
T TIGR00900 235 PYVQSKYLGRGS-------THYGWVLAAFGLGALLGALLLGL----LGRYFK-------RMALMTGAIFVIGLAILVVGL 296 (365)
T ss_pred HHHHHHHhCCch-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHhc-------hhHHHHHHHHHHHHHHHHHHh
Confidence 121111111111 11222333333344444444333 334432 233445555566666555544
Q ss_pred HHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 007262 434 VENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASA 513 (611)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~ 513 (611)
.. + +.+......++.+++.+...+...+++.+.+|++.||++.|+.++..+++..+++.
T Consensus 297 ~~--------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~ 355 (365)
T TIGR00900 297 TP--------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLI 355 (365)
T ss_pred hc--------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 1 25556667788899999999999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q 007262 514 IVSAVDD 520 (611)
Q Consensus 514 i~~~i~~ 520 (611)
+.+.+.+
T Consensus 356 ~~g~l~~ 362 (365)
T TIGR00900 356 LAGPLAD 362 (365)
T ss_pred HHHHHHH
Confidence 9888765
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-21 Score=213.02 Aligned_cols=174 Identities=17% Similarity=0.169 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhh-hHH-----HHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKG-TNV-----LFFWTAATNFMPILGAFLSDSYLGRFLTIGLAS 105 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~-~~~-----~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~ 105 (611)
.+....+..+++.+- +++..+...++.++++.+.++. .++ .++..++..+++++.|+++||+ |||+++.+++
T Consensus 17 ~~~~~~~g~~~~~~d-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~ 94 (490)
T PRK10642 17 AITAASLGNAMEWFD-FGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 344445566666653 4556777788888887554332 222 4666788889999999999997 9999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhh
Q 007262 106 FCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVL 185 (611)
Q Consensus 106 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r 185 (611)
+++.++.++++++++..+ .+.....++++.|+++|+|.|+..+...++++|++|+ ++|
T Consensus 95 ~l~~i~~~~~a~~~~~~~---------------~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~-------~~R 152 (490)
T PRK10642 95 VIMSISTFCIGLIPSYAT---------------IGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPD-------RKR 152 (490)
T ss_pred HHHHHHHHHHHhcccHHH---------------HHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCC-------CCC
Confidence 999999999998762111 0000123588999999999999999999999999999 788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh--------ccccchhhhHHHHHHHHH
Q 007262 186 ESFFGWYYATSAIAVVIALTAIVYIQ--------DHLGWKVGFGVPAILMVL 229 (611)
Q Consensus 186 ~~~~~~~~~~~~ig~~l~~~~~~~l~--------~~~gw~~~f~~~~~~~~~ 229 (611)
+...++...+..+|..+++.+...+. ..+|||+.|++.++..++
T Consensus 153 g~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 153 GFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 99888888777788877776554332 257999999987654443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-21 Score=205.67 Aligned_cols=147 Identities=16% Similarity=0.119 Sum_probs=129.0
Q ss_pred HHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCC
Q 007262 57 YLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSC 136 (611)
Q Consensus 57 yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (611)
.+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.++..++.+++..+.
T Consensus 38 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~----------------- 99 (406)
T PRK15402 38 AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQ----------------- 99 (406)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHc-----------------
Confidence 45678999999999999999999999999999999997 999999999998888888877655
Q ss_pred CCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 007262 137 ESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGW 216 (611)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw 216 (611)
+++.+++.|+++|++.+...+...+++.|.+|+ ++|.+..++.+....+|..++|.+++++.+..+|
T Consensus 100 ------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w 166 (406)
T PRK15402 100 ------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEE-------ADAIKITALMANVALLAPLLGPLVGAALIHVLPW 166 (406)
T ss_pred ------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhCh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 577788999999999999889999999999998 7888888888888888999999999999888899
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 007262 217 KVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 217 ~~~f~~~~~~~~~~~~~~ 234 (611)
++.|++.++..++..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK15402 167 RGMFVLFAALAALSFFGL 184 (406)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 999988777665554443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-21 Score=209.93 Aligned_cols=175 Identities=13% Similarity=0.008 Sum_probs=147.6
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
.+|+.++.+.+..+++......+ .+....+++++|++..+.+++.+++.++..+++++.|+++||+ |||+++.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~ 82 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVL 82 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHH
Confidence 45666665555555555544444 4455689999999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
+.++.++++++. +.+.+++.|++.|++.+...|....++.|++|+ ++|++
T Consensus 83 ~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~rg~ 132 (412)
T TIGR02332 83 WGIASTATMFAT-----------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPA-------YFRAR 132 (412)
T ss_pred HHHHHHHHHHhc-----------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH-------HHHHH
Confidence 999998888766 677899999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc------cccchhhhHHHHHHHHHHHHHH
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQD------HLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~------~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
.+++++...++|..+++.+++++.+ ..|||+.|++.++..++..++.
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 133 ANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMT 185 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988863 3699999998776655443333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=209.11 Aligned_cols=378 Identities=12% Similarity=0.080 Sum_probs=238.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhh-----hhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAK-----GTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
...+.+..++...+++.....++.|++ ++|++..+ .+++.+++.+...++.++.|+++||+ |||+++..+.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 93 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALG 93 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHH
Confidence 444455667777777777778888875 58888665 37888899999999999999999997 999999999888
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
..++.+++.++. +++.+++.|++.|++.+ ..+...+++.|.+|+ ++|++
T Consensus 94 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~-------~~~~~ 142 (408)
T PRK09874 94 MGIVMVLMGLAQ-----------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPR-------NKSGW 142 (408)
T ss_pred HHHHHHHHHHHh-----------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCH-------hhhhH
Confidence 888887776654 67788999999999865 567788899999988 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhccc
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKL 267 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (611)
..++.+...++|..++|.+.+.+.+.++|++.|++.+++.++..+..+...++..+.+++++. .+. +.. .+
T Consensus 143 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~---~~---- 213 (408)
T PRK09874 143 ALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-LHM-REV---VT---- 213 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh-hHH-HHH---HH----
Confidence 999999999999999999999999889999999888776655544433322221100000000 000 000 00
Q ss_pred CCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHH
Q 007262 268 ALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMS 347 (611)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (611)
..++.+.....+.... ...
T Consensus 214 ----------------------------------------------------------~~~~~~~~~~~~~~~~---~~~ 232 (408)
T PRK09874 214 ----------------------------------------------------------SLKNPKLVLSLFVTTL---IIQ 232 (408)
T ss_pred ----------------------------------------------------------hCcCCchHHHHHHHHH---HHH
Confidence 0000011111111000 011
Q ss_pred hhhcC-Cch-hhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHH
Q 007262 348 INISQ-NSF-PLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSC 425 (611)
Q Consensus 348 ~~~~q-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~ 425 (611)
..... .+. ..+..... ... .......+.+..+..+..++..+..++ +.+|+++ ++.+..+.++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~g~~~~~~~l~~~~~~~~~g~----l~dr~g~-------~~~~~~~~~~~~ 299 (408)
T PRK09874 233 VATGSIAPILTLYVRELA-GNV-SNIAFISGMIASVPGVAALLSAPRLGK----LGDRIGP-------EKILITALIFSV 299 (408)
T ss_pred HHHHHHHHHHHHHHHHHh-ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcccc-------chhHHHHHHHHH
Confidence 11111 111 01111100 000 000000111122222333333443333 3344432 233455555555
Q ss_pred HHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHH
Q 007262 426 MGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMA 505 (611)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 505 (611)
++++.....+ +.+.+....++.+++.+...+...+.+.+..|++.+|+..++++..+.
T Consensus 300 ~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 357 (408)
T PRK09874 300 LLLIPMSFVQ----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRD 357 (408)
T ss_pred HHHHHHHHhc----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHH
Confidence 5554443321 344455566778899999999999999899999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007262 506 VANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWA 564 (611)
Q Consensus 506 lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 564 (611)
+|..+++.+.+.+.+..+ ++..|++.+++.+++.+..++..++
T Consensus 358 ~g~~~gp~~~G~l~~~~g----------------~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 358 IGNVTGPLMGAAISANYG----------------FRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred HHHHhhHHHHHHHHhhcc----------------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988765331 3677888888888877776655444
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=215.49 Aligned_cols=391 Identities=13% Similarity=0.114 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 007262 36 IIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLL 115 (611)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~ 115 (611)
+++..++..+.. .+.....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++.++.+++
T Consensus 7 ~~~~~~~~~~~~-~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~ 84 (485)
T TIGR00711 7 LMLGTFMAVLDS-TIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLLC 84 (485)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHH
Confidence 333444444433 3444455667788999999999999999999999999999999997 99999999999999999888
Q ss_pred HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHH
Q 007262 116 WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYAT 195 (611)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (611)
.++. ++..++++|+++|++.+...+...+++.|.+|+ ++|++++++++..
T Consensus 85 ~~~~-----------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~ 134 (485)
T TIGR00711 85 GVAP-----------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP-------EKRGRAMAIWGLT 134 (485)
T ss_pred hCcC-----------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH-------HHHHHHHHHHHHH
Confidence 7655 677899999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHH-HH-----HHHHHHHhhcccCC
Q 007262 196 SAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTG-FA-----QVAVVAYKNRKLAL 269 (611)
Q Consensus 196 ~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~ 269 (611)
..+|..++|.+++++.++++||+.|++.+.+.++..++.....++.++++.++.+... .. ..+.....+....
T Consensus 135 ~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~- 213 (485)
T TIGR00711 135 VLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPER- 213 (485)
T ss_pred HHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCC-
Confidence 9999999999999999999999999988776655554444333322111111111110 00 0000001110000
Q ss_pred CCCCcccccccccCCcccccCchhhh-hhh-----hhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 007262 270 PPPNASWCYHRQKDSLLIVPTSKLRF-LNK-----ACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTG 343 (611)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~-----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (611)
+.......... ... .....+.. .++|... .+..++++.....+..+...
T Consensus 214 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 268 (485)
T TIGR00711 214 ---------------GWFDSNEILILSITGLVAIIAFVVWELT--------DDNPLVD--LRLFKYRNFTIGCVYMSLLG 268 (485)
T ss_pred ---------------CCCCchHHHHHHHHHHHHHHHHHHHHHc--------CCCCccC--HHHHcCCChHHHHHHHHHHH
Confidence 00000000000 000 00000000 0111110 00111111111111111111
Q ss_pred HhHHhhhcCCchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHH
Q 007262 344 IMMSINISQNSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFL 423 (611)
Q Consensus 344 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l 423 (611)
..++......+.++......+. ...+.......+..++..++..++ .+|. ++++.+.+|.++
T Consensus 269 ~~~~~~~~~~p~~~~~~~g~s~-------~~~g~~~~~~~~~~~~~~~~~g~l----~~r~-------~~~~~~~~g~~~ 330 (485)
T TIGR00711 269 LGLYGSFYLLPLYLQQVLGYTA-------LQAGLHILPVGLAPMLSSPIAGRM----GDKI-------DPRKLVTIGLIL 330 (485)
T ss_pred HHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHH----Hhhc-------CcHHHHHHHHHH
Confidence 1111111111111111111111 112233333444444555554443 3443 334456677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHH
Q 007262 424 SCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLG 503 (611)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~ 503 (611)
.+++..+..... ..+.+.+..+...++.+++.+...++......+..|++.+|+++|+.++.
T Consensus 331 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 392 (485)
T TIGR00711 331 YAVGFYWRAFTF------------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFT 392 (485)
T ss_pred HHHHHHHHhccC------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHH
Confidence 777766654210 01234555666678889999998888888888899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 007262 504 MAVANLLASAIVSAVDD 520 (611)
Q Consensus 504 ~~lg~~l~~~i~~~i~~ 520 (611)
+.+|+.+|+.+.+.+.+
T Consensus 393 ~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 393 RQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999888764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-21 Score=207.80 Aligned_cols=145 Identities=13% Similarity=0.132 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 007262 52 TNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNI 131 (611)
Q Consensus 52 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 131 (611)
....+.+++++|+|.++.+++.+.+.++..+++++.|+++||+ |||+++..+.+++.++.+++++++
T Consensus 29 ~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~------------ 95 (393)
T PRK09705 29 GPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP------------ 95 (393)
T ss_pred chhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc------------
Confidence 3445567889999999999999999999999999999999997 999999999999999999999876
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 132 LTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQ 211 (611)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~ 211 (611)
++..++++|+++|+|.+...+....++.+++|+ +|+++++.+..+.++|..+++.+++++.
T Consensus 96 -----------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~~~~~~g~~~g~~~~~~l~ 156 (393)
T PRK09705 96 -----------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ--------RTPLVMGLWSAALMGGGGLGAAITPWLV 156 (393)
T ss_pred -----------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc--------cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677789999999999999999999999998854 4788999998888999999999999888
Q ss_pred ccc-cchhhhHHHHHHHH
Q 007262 212 DHL-GWKVGFGVPAILMV 228 (611)
Q Consensus 212 ~~~-gw~~~f~~~~~~~~ 228 (611)
++. +||..+.+.++..+
T Consensus 157 ~~~~~w~~~~~~~~~~~~ 174 (393)
T PRK09705 157 QHSETWYQTLAWWALPAV 174 (393)
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 775 89988766544433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-22 Score=216.90 Aligned_cols=151 Identities=13% Similarity=0.077 Sum_probs=126.8
Q ss_pred HHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccc
Q 007262 55 ILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQ 134 (611)
Q Consensus 55 ~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 134 (611)
...+++++|.+.++.+++.+.+.++..++.+++|+++||+ |||++++.+.+++.++.++++++.
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~--------------- 105 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS--------------- 105 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh---------------
Confidence 3456788999999999999999999999999999999997 999999999988888888887755
Q ss_pred CCCCCCchhhHHHHH-HHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007262 135 SCESPTTAQMTLLIS-SFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDH 213 (611)
Q Consensus 135 ~~~~~~~~~~~~l~~-~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~ 213 (611)
+.+.+++ .|++.|++.+...+...+++.++++ ++|+++.++.+.+.++|..++|.+.+++.+.
T Consensus 106 --------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~--------~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~ 169 (455)
T TIGR00892 106 --------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY--------RRRPLANGLAMAGSPVFLSTLAPLNQYLFES 169 (455)
T ss_pred --------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH--------hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4555554 4688999998876777788888884 5689999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHh
Q 007262 214 LGWKVGFGVPAILMVLSLLLFFIA 237 (611)
Q Consensus 214 ~gw~~~f~~~~~~~~~~~~~~~~~ 237 (611)
+|||+.|++.+++.+++.+..++.
T Consensus 170 ~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 170 FGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999887766555444333
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=212.17 Aligned_cols=151 Identities=17% Similarity=0.276 Sum_probs=127.3
Q ss_pred HHHHHHhCCC--------hhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007262 56 LYLMKDYHLG--------VAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPS 127 (611)
Q Consensus 56 ~yl~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 127 (611)
.....+++++ ..+.+++.+++.++..++.++.|+++||+ |||+++.++.+++.++.+++.++.+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~------- 123 (481)
T TIGR00879 52 ALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF------- 123 (481)
T ss_pred hcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 3445555555 89999999999999999999999999997 9999999999999998888865431
Q ss_pred CCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 007262 128 PCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAI 207 (611)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~ 207 (611)
..+++.++++|+++|+|.+...+...++++|.+|+ ++|++.+++++...++|..+++.++
T Consensus 124 -------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 124 -------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPK-------ALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred -------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCCh-------hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 11456789999999999999999999999999999 8899999999999999999999988
Q ss_pred ---HHhhccccchhhhHHHHHHHHHHHHHH
Q 007262 208 ---VYIQDHLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 208 ---~~l~~~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
+...+..+||+.|++.++..++.++..
T Consensus 184 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 184 SGKVSLNNTLGWRIPLGLQLIPAGLLFLGL 213 (481)
T ss_pred HHhhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 666677899999998665555444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=206.63 Aligned_cols=152 Identities=15% Similarity=0.122 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 007262 51 VTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCN 130 (611)
Q Consensus 51 ~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 130 (611)
.+.+.+++++++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.+++.++.
T Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~----------- 89 (377)
T TIGR00890 22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD----------- 89 (377)
T ss_pred hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH-----------
Confidence 34567788899999999999999999999999999999999997 999999999999999998888776
Q ss_pred ccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007262 131 ILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYI 210 (611)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l 210 (611)
+++.++++|++.|++.+...+.....+.+++|+ +|+++.++.....++|..+++.+.+.+
T Consensus 90 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~ 149 (377)
T TIGR00890 90 ------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD--------KRGLASGIIIGGYGLGSFILSPLITSV 149 (377)
T ss_pred ------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc--------ccHHHHHHHHHhcchhHhHHHHHHHHH
Confidence 788899999999999999888888888888864 478889998888889988777777777
Q ss_pred hccccchhhhHHHHHHHHHHHHHH
Q 007262 211 QDHLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 211 ~~~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
.+..|||+.|++.+++.++..+..
T Consensus 150 ~~~~~~~~~f~~~~~~~~~~~~~~ 173 (377)
T TIGR00890 150 INLEGVPAAFIYMGIIFLLVIVLG 173 (377)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHH
Confidence 778899999998777665554443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-21 Score=208.77 Aligned_cols=165 Identities=15% Similarity=0.167 Sum_probs=141.8
Q ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007262 30 LITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSL 109 (611)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 109 (611)
++.+....+..+.+.+..+. ..+...++++++|+++.+.+++.+++.++..++.++.|+++||+ |||+++.++.++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~ 94 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFML-IFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 34444444555555554443 35566678899999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
++.+++.++. +.+.++++|++.|+|.+...+....++.|.+|+ ++|+++.
T Consensus 95 ~~~~~~~~~~-----------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~-------~~r~~~~ 144 (426)
T PRK12307 95 VGTGLSGLAS-----------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPK-------HLKSKAS 144 (426)
T ss_pred HHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH-------hHhhHhh
Confidence 9998888766 678899999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHH
Q 007262 190 GWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAIL 226 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~ 226 (611)
++++.+..+|..+++.+.+.+.+.++||+.|++....
T Consensus 145 ~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 145 AFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred hHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 9999999999999999999998989999999875443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-21 Score=203.86 Aligned_cols=171 Identities=10% Similarity=0.135 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
.++.+.+..++.....+.....++ .+++++|.+..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 81 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIG 81 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHH
Confidence 455556666666666666666554 46778999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
.+++.+++ +++.+++.|++.|++.+...+....++.|++|+ ++|++.++.
T Consensus 82 ~~l~~~~~-----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 131 (382)
T PRK10091 82 NAMFTLSS-----------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP-------GKVTAAVAG 131 (382)
T ss_pred HHHHHHhC-----------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh-------HHhhHHHHH
Confidence 98888766 688899999999999999889989999999988 788899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHH
Q 007262 192 YYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
+..+..+|..++|.+++++.+..+||+.|++.++..++..+..
T Consensus 132 ~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 132 MVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999998999999998877655554433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-21 Score=208.38 Aligned_cols=155 Identities=11% Similarity=0.057 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 007262 52 TNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNI 131 (611)
Q Consensus 52 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 131 (611)
....+|+.++ |++..+.+++.+.+.++..++++++|+++||+ |||+++.++.++..++.+++.++..
T Consensus 49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~----------- 115 (452)
T PRK11273 49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW----------- 115 (452)
T ss_pred HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc-----------
Confidence 3445677777 99999999999999999999999999999997 9999999999998888877776420
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHH-HHHHHHHHh
Q 007262 132 LTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVV-IALTAIVYI 210 (611)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-l~~~~~~~l 210 (611)
...+.+.+++.|++.|++.+...+.....+.|++|+ ++|++++++++.+.++|+. .+|++...+
T Consensus 116 --------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~ 180 (452)
T PRK11273 116 --------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGLPPLLFLLGM 180 (452)
T ss_pred --------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 012566788899999999999999888899999998 8899999999998888864 455443334
Q ss_pred hccccchhhhHHHHHHHHHHHHHH
Q 007262 211 QDHLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 211 ~~~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
....+||+.|++.+++.++..++.
T Consensus 181 ~~~~gw~~~f~i~~~~~~~~~~l~ 204 (452)
T PRK11273 181 AWFNDWHAALYMPAFAAILVALFA 204 (452)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHH
Confidence 344589999998776655544433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-22 Score=216.92 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=127.4
Q ss_pred HHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 007262 53 NMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNIL 132 (611)
Q Consensus 53 ~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 132 (611)
...+.+.+++|++..+.+++.+++.+++.++++++|+++||+ |||+++.++.+++.++.+..++... .
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-~---------- 117 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG-S---------- 117 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh-c----------
Confidence 344567889999999999999999999999999999999997 9999999888887777666554210 0
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007262 133 TQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQD 212 (611)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~ 212 (611)
...+++.+++.|+++|++.+...|....+++|++|+ ++|+++++++..+.++|..+++.+..++.+
T Consensus 118 -------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 118 -------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPR-------RKRGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred -------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCc-------cceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 012688899999999999999999999999999999 889999999999999999999988877665
Q ss_pred cc---cchhhhHHHHHHHHHHHHH
Q 007262 213 HL---GWKVGFGVPAILMVLSLLL 233 (611)
Q Consensus 213 ~~---gw~~~f~~~~~~~~~~~~~ 233 (611)
.. +|+..|.+.+++.++..++
T Consensus 184 ~~~~~~~~~~f~~~g~~~~~~~i~ 207 (467)
T PRK09556 184 YFFDGHVIGMFIFPSIIALIIGFI 207 (467)
T ss_pred hhccCcchhHHHHHHHHHHHHHHH
Confidence 43 5898888766655444333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-21 Score=210.44 Aligned_cols=173 Identities=12% Similarity=0.146 Sum_probs=130.5
Q ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007262 30 LITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSL 109 (611)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 109 (611)
++.+.......++..+..+.+. ....++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+++.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~ 112 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAA-PLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTA 112 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 3334433344444444444443 344577889999999999999999999999999999999997 99999999998888
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
++.++++++. +...+++.|+++|++.+... ....+++|++|+ ++|++++
T Consensus 113 ~~~~~~~~~~-----------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~-------~~rg~a~ 161 (476)
T PLN00028 113 PAVFCMSLVS-----------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNG-------KIVGTAN 161 (476)
T ss_pred HHHHHHHHhc-----------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcCh-------hheeHHH
Confidence 8887777655 56778889999999988754 455678999998 8899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----c-----cccchhhhHHHHHHHHHHHHHHH
Q 007262 190 GWYYATSAIAVVIALTAIVYIQ----D-----HLGWKVGFGVPAILMVLSLLLFF 235 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~----~-----~~gw~~~f~~~~~~~~~~~~~~~ 235 (611)
++.+...++|..+++.+.+.+. + ..|||+.|++.+++.++..++.+
T Consensus 162 g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~ 216 (476)
T PLN00028 162 GIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL 216 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 9988777777777765554432 2 25899999988776655544433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-21 Score=201.58 Aligned_cols=168 Identities=20% Similarity=0.120 Sum_probs=133.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH-HHHHHHHHHHHHH
Q 007262 38 ANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGL-ASFCSLLGMFLLW 116 (611)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~-~~~~~~i~~~~~~ 116 (611)
+..++..++.......++.|+++++|.+..+.+++.+++.+...+..++.|+++||+ ||||.+++ +.++..++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence 456667777777788899999999999999999999999999999999999999997 98887654 4455555656666
Q ss_pred HhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh--HHHHHHH
Q 007262 117 LTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES--FFGWYYA 194 (611)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~ 194 (611)
.++ +++.+++.|++++.+.+...|...++..|..|+ +.|.. ..+..+.
T Consensus 83 ~~~-----------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 132 (375)
T TIGR00899 83 WNR-----------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADR-------TGREAVMFSSVMRA 132 (375)
T ss_pred hcc-----------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh-------cchhhHHHHHHHHH
Confidence 544 577788889888888788888888888888776 33443 3567777
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Q 007262 195 TSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 195 ~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
..++|..++|.+++++.+.++||+.|++.++..++..++.+.
T Consensus 133 ~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 133 QISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999899999999987765555444433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-21 Score=205.80 Aligned_cols=174 Identities=16% Similarity=0.158 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhC---CChhhhhHHHHHH---HHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYH---LGVAKGTNVLFFW---TAATNFMPILGAFLSDSYLGRFLTIGLASF 106 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g---~~~~~~~~~~~~~---~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 106 (611)
+....+..+++...+. +.+++..++.++++ .+..+.+++.+++ +++..++.+++|+++||+ |||+++.++.+
T Consensus 24 ~~~~~~~~~~~~~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~ 101 (432)
T PRK10406 24 IVGASSGNLVEWFDFY-VYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVC 101 (432)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 3333344555555544 36677788888885 4555444444444 444559999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhh
Q 007262 107 CSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLE 186 (611)
Q Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (611)
++.++.++++++++..+ .+..+...+++.|+++|+|.|+..|...++++|++|+ ++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~-------~~rg 159 (432)
T PRK10406 102 MMCFGSLVIACLPGYET---------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVE-------GRKG 159 (432)
T ss_pred HHHHHHHHHhhcCCchh---------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCC-------Cccc
Confidence 99999998887652111 0112345788999999999999999999999999999 7888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh--------ccccchhhhHHHHHHHHHH
Q 007262 187 SFFGWYYATSAIAVVIALTAIVYIQ--------DHLGWKVGFGVPAILMVLS 230 (611)
Q Consensus 187 ~~~~~~~~~~~ig~~l~~~~~~~l~--------~~~gw~~~f~~~~~~~~~~ 230 (611)
...+..+...+.|..+++.+...+. ..+|||++|++.++..++.
T Consensus 160 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 160 FYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 8888888888888888876655443 2579999999876655443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=209.21 Aligned_cols=165 Identities=20% Similarity=0.278 Sum_probs=143.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHH
Q 007262 38 ANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWL 117 (611)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~ 117 (611)
+..++..+....+...++.++.+++|.+..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++..+
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhhh
Confidence 455556666666666666588999999999999999999999999999999999997 9999999999999998555555
Q ss_pred hhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHH
Q 007262 118 TAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSA 197 (611)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 197 (611)
+. +.+.++++|++.|++.+...+...+++.|.+|+ ++|++.+++.+...+
T Consensus 82 ~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~ 131 (352)
T PF07690_consen 82 AS-----------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPP-------EERGRAFGILSAGFS 131 (352)
T ss_dssp HC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-------CCHHHHHHHHHHHHH
T ss_pred hh-----------------------hHHHHhhhccccccccccccccccccccccchh-------hhhhhccccccchhh
Confidence 43 456899999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Q 007262 198 IAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLL 233 (611)
Q Consensus 198 ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (611)
+|..++|.+++++.+..+||+.|++.+++.++..++
T Consensus 132 ~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 132 LGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred hhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 999999999999998899999999988887776654
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.5e-21 Score=205.66 Aligned_cols=176 Identities=10% Similarity=0.062 Sum_probs=126.6
Q ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh--CCChhhhhHHH-----HHHHHHHHHHHHHHHHHhhhccCchHHH
Q 007262 29 GLITMPFIIANEAFEKVASYGLVTNMILYLMKDY--HLGVAKGTNVL-----FFWTAATNFMPILGAFLSDSYLGRFLTI 101 (611)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~--g~~~~~~~~~~-----~~~~~~~~~~~~~~G~laD~~~Gr~~~~ 101 (611)
+++......+..+++..-+..+....+.++.+++ +.++.+ +++. ++..++..++.++.|+++||+ |||+++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l 97 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHH
Confidence 3454555555666665555443333444566655 666663 4443 233445668888899999997 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCc
Q 007262 102 GLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNN 181 (611)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~ 181 (611)
.++.+++.++.++++++++... .+......+++.|+++|++.|+..+....++.|++|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~------ 156 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFST---------------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPK------ 156 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHHH---------------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCC------
Confidence 9999999999999888652110 0001123688899999999999999999999999999
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------ccccchhhhHHHHHHHH
Q 007262 182 ERVLESFFGWYYATSAIAVVIALTAIVYIQ--------DHLGWKVGFGVPAILMV 228 (611)
Q Consensus 182 ~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~--------~~~gw~~~f~~~~~~~~ 228 (611)
++|+...+..+.+..+|..++..+...+. ..+|||++|++.++..+
T Consensus 157 -~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 157 -NKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 78888888888888888888877666554 25799999998766543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-20 Score=199.24 Aligned_cols=175 Identities=18% Similarity=0.116 Sum_probs=144.0
Q ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007262 30 LITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSL 109 (611)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 109 (611)
++.++.+....++..++.......+ +.+.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAF-PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA 81 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence 3334433334444444444333333 456788999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
++.+++.++. +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.+
T Consensus 82 ~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 131 (385)
T TIGR00710 82 LSSLGLALSN-----------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPG-------EELSRIY 131 (385)
T ss_pred HHHHHHHHHc-----------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc-------HHHHHHH
Confidence 8888887655 677889999999999999999999999999998 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Q 007262 190 GWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
++.+....+|..++|.+++++.+..+|++.|++.++..++..+..+.
T Consensus 132 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 132 SILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999899999998877665555444443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-21 Score=204.80 Aligned_cols=172 Identities=13% Similarity=0.176 Sum_probs=146.5
Q ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007262 27 KGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASF 106 (611)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 106 (611)
+.+|+.+....+..+++.+..+.+.. ....+++++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~ 85 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVAL-VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIV 85 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 45566666666677777776665544 44567889999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhh
Q 007262 107 CSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLE 186 (611)
Q Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (611)
+..++.+++.++. +++.+++.|++.|++.+...+...+++.|.+|+ ++|+
T Consensus 86 ~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~~~ 135 (405)
T TIGR00891 86 LFSAGTLACGFAP-----------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPK-------HLRN 135 (405)
T ss_pred HHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCCh-------hhhh
Confidence 9988888887755 677889999999999999999999999999998 8899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccc--chhhhHHHHHHHHHH
Q 007262 187 SFFGWYYATSAIAVVIALTAIVYIQDHLG--WKVGFGVPAILMVLS 230 (611)
Q Consensus 187 ~~~~~~~~~~~ig~~l~~~~~~~l~~~~g--w~~~f~~~~~~~~~~ 230 (611)
++.++.+...++|..+++.+.+.+.+..+ ||+.|++.++..++.
T Consensus 136 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 136 KASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887665 999998765544443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-21 Score=210.90 Aligned_cols=167 Identities=13% Similarity=0.145 Sum_probs=142.6
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
.+|+.+..+.+..++..+..+.+ ..+..++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 34555555555555555554444 4555677889999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
..++.+++.++. +++.+++.|++.|++.++..+...+++.|.+|+ ++|++
T Consensus 95 ~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~ 144 (496)
T PRK03893 95 FSVGTLACGFAP-----------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK-------HLRNK 144 (496)
T ss_pred HHHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHH
Confidence 999888888765 678899999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHH
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAIL 226 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~ 226 (611)
.+++.+...++|..++|.+.+++.+.++||+.|++.+..
T Consensus 145 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 145 ASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999998875443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-22 Score=201.19 Aligned_cols=170 Identities=14% Similarity=0.139 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHhhhhH---HHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 36 IIANEAFEKVASYGLV---TNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 36 ~~~~~~~~~~~~~~~~---~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
+++..++...++|-+- +...+++.++.++|.+|.|.+.+++.+++.++-.+.|.++||. +.|+.+.+++++..+..
T Consensus 30 if~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai~n 108 (448)
T COG2271 30 IFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAIVN 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHHHH
Confidence 3445556666666554 3456789999999999999999999999999999999999997 99999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
+++++++ +...+.+.-++.|..+|.-.|++...++.++++ ++||+..+++
T Consensus 109 il~Gfs~-----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr-------~eRG~~~siW 158 (448)
T COG2271 109 ILFGFSP-----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR-------KERGTWWSIW 158 (448)
T ss_pred HHHhhhh-----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc-------cccCceEEEe
Confidence 9999876 677788889999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHH--HHhhccccchhhhHHHHHHHHHHHHHHHH
Q 007262 193 YATSAIAVVIALTAI--VYIQDHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~--~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
+.+.|+|+.+.|++. +++.++++||..|++++++.++..++.+.
T Consensus 159 n~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~ 204 (448)
T COG2271 159 NTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF 204 (448)
T ss_pred hhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999887665554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-20 Score=199.56 Aligned_cols=174 Identities=11% Similarity=0.067 Sum_probs=140.8
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
+|+|..+...+..++.....+..- .+...+.+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTG-MVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 445555555555555555444343 334456788999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
..++.+++.+++ +++.+++.|+++|++.|...+...+++.|.+|+ ++|+.
T Consensus 82 ~~i~~~l~~~~~-----------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~ 131 (394)
T PRK03699 82 MILAVAGLMFSH-----------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEG-------KQRGS 131 (394)
T ss_pred HHHHHHHHHHcc-----------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhccc-------chHHH
Confidence 888888887655 677889999999999999999999999999988 78899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-cccchhhhHHHHHHHHHHHHH
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQD-HLGWKVGFGVPAILMVLSLLL 233 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~-~~gw~~~f~~~~~~~~~~~~~ 233 (611)
.++..+...++|+.++|.+.+++.. ..|||+.|.+.+++.++..++
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 132 RLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999988887754 579999998877665544433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-20 Score=195.91 Aligned_cols=344 Identities=18% Similarity=0.223 Sum_probs=249.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 007262 36 IIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLL 115 (611)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~ 115 (611)
+....++.....+......+.|. +++|.+..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~~ 81 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHHH
Confidence 34566677777777777777765 45799999999999999999999999999999997 99999999999999998888
Q ss_pred HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHH
Q 007262 116 WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYAT 195 (611)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (611)
.+.. +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.+++.+..
T Consensus 82 ~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 131 (352)
T cd06174 82 AFAS-----------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP-------KERGRALGLFSAG 131 (352)
T ss_pred HHhc-----------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCc-------cchhhhhhHHHHH
Confidence 7654 678899999999999999999999999999999 8899999999999
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCCCCCCcc
Q 007262 196 SAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNAS 275 (611)
Q Consensus 196 ~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (611)
.++|..++|.+.+.+.+..+|++.|++.....++..+.....+ +.
T Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~---------------------- 176 (352)
T cd06174 132 FGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------RL---------------------- 176 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HH----------------------
Confidence 9999999999999999988999999888776665554433221 00
Q ss_pred cccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhhhcC-Cc
Q 007262 276 WCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQ-NS 354 (611)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q-~~ 354 (611)
.+...............+.+ .+
T Consensus 177 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 199 (352)
T cd06174 177 ---------------------------------------------------------LLLLALAFFLLSFGYYGLLTYLP 199 (352)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHhHHHHHHHHHH
Confidence 00000000000000111111 11
Q ss_pred hhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhH-HHHHHHHHHHHHHHHHHH
Q 007262 355 FPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKL-RMGIGLFLSCMGMVVSGL 433 (611)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~-~i~~g~~l~~~~~~~~~~ 433 (611)
.+.......+. ...+.......+..++..++..+ +.+|.++| + .+..+.++..++.++...
T Consensus 200 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~ 261 (352)
T cd06174 200 LYLQEVLGLSA-------AEAGLLLSLFGLGGILGALLGGL----LSDRLGRR-------RLLLLIGLLLAALGLLLLAL 261 (352)
T ss_pred HHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhh-------hHHHHHHHHHHHHHHHHHHH
Confidence 10111001111 11233444445555555555444 34454332 2 467777777777776665
Q ss_pred HHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 007262 434 VENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASA 513 (611)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~ 513 (611)
.+ +.+......++.+++.+...+....++.+..|++.|++.+|+.+..++++..+++.
T Consensus 262 ~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 319 (352)
T cd06174 262 AP----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPL 319 (352)
T ss_pred hc----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 35667778888999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHH
Q 007262 514 IVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFL 559 (611)
Q Consensus 514 i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~ 559 (611)
+.+.+.+.. + +...|++.+++.+++.+..+
T Consensus 320 i~g~l~~~~------~----------~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 320 LAGLLLDTG------G----------YGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHhccc------C----------cchHHHHHHHHHHHHHHHhe
Confidence 998876522 1 25667777777777766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-20 Score=197.45 Aligned_cols=156 Identities=15% Similarity=0.009 Sum_probs=136.1
Q ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007262 30 LITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSL 109 (611)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 109 (611)
.+.++.++...++..+....+.+.+|.|++ ++|.|..+.|++.+.+.++..+++++.|+++||+ |||+++..+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 345777777888888887777788887766 6899999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
++...+.++. +++.++++|+++|++.+...+...+.+.+..++ ++|++.+
T Consensus 83 ~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 132 (381)
T PRK03633 83 AGCAGLGLMV-----------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS-------RNRGRLL 132 (381)
T ss_pred HHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHH
Confidence 8888877755 678899999999999999999888888888888 7899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccch
Q 007262 190 GWYYATSAIAVVIALTAIVYIQDHLGWK 217 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~~~~gw~ 217 (611)
++++...++|..++|.+++.+.+...|.
T Consensus 133 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 160 (381)
T PRK03633 133 AAYMMVYYLGTVLGQLLVSKVSTELMSV 160 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccch
Confidence 9999999999999999999887754333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-20 Score=197.54 Aligned_cols=173 Identities=16% Similarity=0.122 Sum_probs=142.2
Q ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007262 29 GLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCS 108 (611)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 108 (611)
+|+.+...++..++.....+ ...+..+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~ 92 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLF 92 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHH
Confidence 34444444444444444333 344556677788999999999999999999999999999999997 9999999999888
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhH
Q 007262 109 LLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188 (611)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (611)
.++.++..++. +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.
T Consensus 93 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~ 142 (398)
T TIGR00895 93 SVFTLLCALAT-----------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK-------RFRGTA 142 (398)
T ss_pred HHHHHHHHHcc-----------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCH-------Hhhchh
Confidence 88887777654 577788999999999999999999999999998 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Q 007262 189 FGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLL 233 (611)
Q Consensus 189 ~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (611)
+++.+....+|..+++.+.+++.+..+|++.|++.+++.++..++
T Consensus 143 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 187 (398)
T TIGR00895 143 VGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL 187 (398)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence 999999999999999999999999999999998876444443333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=205.13 Aligned_cols=147 Identities=16% Similarity=0.197 Sum_probs=128.6
Q ss_pred HhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCC
Q 007262 61 DYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPT 140 (611)
Q Consensus 61 ~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (611)
++|++..+.|++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++.++.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~--------------------- 127 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAA--------------------- 127 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHH---------------------
Confidence 6899999999999999999999999999999997 999999999988888877765432
Q ss_pred chhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc-cchhh
Q 007262 141 TAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHL-GWKVG 219 (611)
Q Consensus 141 ~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~-gw~~~ 219 (611)
..+...+++.|+++|++.+...|....+++|++|+ ++|++++++.+.+.++|..++|.+++++.+.+ |||+.
T Consensus 128 ~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~ 200 (465)
T TIGR00894 128 GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPP-------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI 200 (465)
T ss_pred HcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence 01356789999999999999999999999999999 99999999999999999999999999999884 99999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 007262 220 FGVPAILMVLSLLLFFI 236 (611)
Q Consensus 220 f~~~~~~~~~~~~~~~~ 236 (611)
|++.++..++..++.+.
T Consensus 201 f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 201 FYVFGIVGCAWSLLWFV 217 (465)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 99987766555444433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-19 Score=193.56 Aligned_cols=172 Identities=14% Similarity=0.123 Sum_probs=142.8
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
+.+|.++.+.....+.....+.....+ +++.+++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~ 82 (394)
T PRK11652 5 RNVNLLFMLVLLVAVGQMAQTIYVPAI-ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI 82 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence 356666666666666665555444433 455688999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
..++.+++.++. +++.+++.|++.|++.+...+....+..|.+++ ++++.
T Consensus 83 ~~~~~~~~~~~~-----------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~ 132 (394)
T PRK11652 83 FILGTLVALFAH-----------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG-------TQLRH 132 (394)
T ss_pred HHHHHHHHHHHc-----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH-------HHHHH
Confidence 888888777654 677889999999999998888888889998887 78888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHH
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSL 231 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~ 231 (611)
..++...+..++..++|.+++++.+..|||+.|++.++..++..
T Consensus 133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~ 176 (394)
T PRK11652 133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT 176 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 88888888899999999999999988899999988766554433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-19 Score=194.72 Aligned_cols=162 Identities=19% Similarity=0.261 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
.+.++...++..++...+...++. +.+++|.+..+.+++.+.+.+...++.+++|+++||+ |||+++.++.+++.++.
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~ 82 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGC 82 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHH
Confidence 334455666666655444443443 4678999999999999999999999999999999997 99999999999998888
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
+.+.++. + .++.|+++|++.+...|+..+++.|.+|+ ++|+++.++.
T Consensus 83 ~~~~~~~-----------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~-------~~~~~a~~~~ 129 (393)
T PRK11195 83 LLMLFGI-----------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPG-------EKLVKANGWM 129 (393)
T ss_pred HHHHHHH-----------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHH
Confidence 7766543 2 26789999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHH
Q 007262 193 YATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLS 230 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 230 (611)
....++|..++|.++|++.+. .|+..+.+.+...+++
T Consensus 130 ~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 130 EGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999875 4777766655444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-19 Score=194.07 Aligned_cols=162 Identities=15% Similarity=0.151 Sum_probs=135.9
Q ss_pred HHHHhhhhHHHHHHH--HHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhh
Q 007262 43 EKVASYGLVTNMILY--LMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAM 120 (611)
Q Consensus 43 ~~~~~~~~~~~~~~y--l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~ 120 (611)
..+.++....+.|.+ +++++|.+..+.+++.+++.++..++.+++|+++||+ |||+++..+.++..++.+++.++.
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~- 92 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE- 92 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc-
Confidence 334444444555544 6789999999999999999999999999999999997 999999999988888887777654
Q ss_pred cCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHH
Q 007262 121 IPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAV 200 (611)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 200 (611)
+++.+++.|+++|++.+...+...+++.|.+|+ +++.+.++......++|.
T Consensus 93 ----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 143 (401)
T PRK11043 93 ----------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA-------QKANRVFATIMPLVALSP 143 (401)
T ss_pred ----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHH
Confidence 677789999999999988888888999999998 778888888888888999
Q ss_pred HHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH
Q 007262 201 VIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFF 235 (611)
Q Consensus 201 ~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (611)
.++|.+++++.+.+|||+.|++.....++..+..+
T Consensus 144 ~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 144 ALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887766655544433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-19 Score=192.06 Aligned_cols=171 Identities=12% Similarity=0.117 Sum_probs=140.2
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
+.||.+....+..++..++.+....+++.++ +++|++..+.+++.+.+.++..++.++.|+++||+ ||||++..+.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence 5667777777788887788777778888887 56899999999999999999999999999999997 999999999998
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
+.++.+++.+.. .. ..+.+.+++.|++.|+|.+...+...+.+.+.+|+ ++|++
T Consensus 88 ~~~~~~~~~~~~-~~------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~-------~~~g~ 141 (402)
T TIGR00897 88 WCVGHAAFIVFG-LG------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ-------DNLSS 141 (402)
T ss_pred HHHHHHHHHHHh-cc------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH-------HHHHH
Confidence 888876553211 00 01566778899999999988888888889999998 89999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhccccchhhhHHHHHH
Q 007262 188 FFGWYYATSAIAV-VIALTAIVYIQDHLGWKVGFGVPAIL 226 (611)
Q Consensus 188 ~~~~~~~~~~ig~-~l~~~~~~~l~~~~gw~~~f~~~~~~ 226 (611)
++++++...++|. .++|.+++++.+.+||+..++.....
T Consensus 142 ~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 142 AVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 9999999999996 57898889988888876665554433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-22 Score=204.80 Aligned_cols=181 Identities=15% Similarity=0.212 Sum_probs=161.5
Q ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007262 27 KGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASF 106 (611)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 106 (611)
+..++.+..++.++++++.-.|.+.. ...=.++.+|++++..|.+.+++.+...+..|+.|+++||+ .||+++.+|..
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~ 106 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIF 106 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHH
Confidence 34456677778899999999988876 44566888999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhh
Q 007262 107 CSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLE 186 (611)
Q Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (611)
++.+++++++++. .+|++.+.|.+.|+|.+.+.|.++++++|.||+ ++|+
T Consensus 107 iW~~Av~~~~fs~-----------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~-------~~Rs 156 (493)
T KOG1330|consen 107 IWTLAVFASGFSN-----------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD-------DKRS 156 (493)
T ss_pred HHHHHHHHHHHHH-----------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcc-------hhhh
Confidence 9999999999876 899999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHHHHHHHhCc
Q 007262 187 SFFGWYYATSAIAVVIALTAIVYIQDHLG-WKVGFGVPAILMVLSLLLFFIASP 239 (611)
Q Consensus 187 ~~~~~~~~~~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~ 239 (611)
+.++++|++.++|..+|.++++++....+ |||.|...+++.++..++..+..+
T Consensus 157 ~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 157 RVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred HHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 99999999999999999999998888766 999999988887776665544433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=194.36 Aligned_cols=171 Identities=13% Similarity=0.111 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHH-HHHHHHHHHHHHhhhccCchHHHH-HHHHHHHHH
Q 007262 34 PFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTA-ATNFMPILGAFLSDSYLGRFLTIG-LASFCSLLG 111 (611)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Gr~~~~~-~~~~~~~i~ 111 (611)
+..++..++.++........++.|+++++|++.++.|++.+...+ +..++++.+|+ +||+ ||||.++ .+.++..++
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~~~ 95 (393)
T PRK15011 18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGVLA 95 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHHHH
Confidence 334556788888888888899999999999999999999876655 55566666666 9997 9988754 445555566
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhh--hhHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVL--ESFF 189 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~ 189 (611)
..+..++. +++.+++.+.+.+...+...|...++..|..++ +.| +...
T Consensus 96 ~~~~~~~~-----------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 145 (393)
T PRK15011 96 CTLFAWNR-----------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADK-------TGREAVMFS 145 (393)
T ss_pred HHHHHHhh-----------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh-------ccchHHHHH
Confidence 55555544 455555444444433346677888888887665 333 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Q 007262 190 GWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
++.+...++|..++|.+++++.+++|||..|++.++..++..+..+.
T Consensus 146 ~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 146 SFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 67888899999999999999999899999998887766555444433
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-22 Score=214.20 Aligned_cols=365 Identities=34% Similarity=0.528 Sum_probs=230.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCC
Q 007262 98 FLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKD 177 (611)
Q Consensus 98 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~ 177 (611)
.|++.++.++..+|.+++.+++ .|... .++.+...++++..++++|.|+..|+..++++||+++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~-~~~~~-------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~ 66 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSA-IPPSL-------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD 66 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHH-TSSSC-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred CHhhhHHHHHHHHHHHHhHHHH-hcchh-------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence 4789999999999999988776 44321 123356789999999999999999999999999999843
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCcccccc-CCCCchhHHHHH
Q 007262 178 NPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKL-KASSSLLTGFAQ 256 (611)
Q Consensus 178 ~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 256 (611)
+++|.++++++|++.|+|..+++.+.+++.+++||.+.|.++.+.++++++.++..++++.+. ++.+++..+..+
T Consensus 67 ----~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~ 142 (372)
T PF00854_consen 67 ----DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIK 142 (372)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SH
T ss_pred ----hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHH
Confidence 277899999999999999999999999999999999999999999999999999998888877 566666555333
Q ss_pred -HHHHHHhhcccCCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCc-chhhHHHHHHHHH
Q 007262 257 -VAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSL-CTIEQVEELKALI 334 (611)
Q Consensus 257 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 334 (611)
+...+.+++....+... ..+.+...........+.....+ +....... ...|.. ++.++++..|.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~k~~~ 211 (372)
T PF00854_consen 143 LVLVAAFKKRKLAVPKGS-SWLDWALFQYSERSIFGIIVFIR-AAVIFFPE---------IFFWALFCQVQRVEELKALI 211 (372)
T ss_dssp HHHHHHHHHHCCCH-HHH-HHHHHHHHHHCCCCCCCCCCHHH-HHHHHCCC---------HHHHTTTSSTTTHHHCCHHH
T ss_pred HHHHHHHHHhhcccccch-HHHHHhhhhhhhhhhhhhhhhcc-chhhhhhh---------hhhcccCCccceeeeeeeee
Confidence 33333343333222111 11111100000000000000000 00000000 001110 2234566777777
Q ss_pred HHHHHHHHhHhHHhhhcC-CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCCh
Q 007262 335 KVLPLWSTGIMMSINISQ-NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGV 413 (611)
Q Consensus 335 ~~~~l~~~~~~~~~~~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~ 413 (611)
+.++.+.+.+.++..+.| +.+...+...++....+.+++|+..++.+|.+.++++.|+.+++++|+.++ ++ ..++
T Consensus 212 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~---~~~~ 287 (372)
T PF00854_consen 212 RFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GI---QPSP 287 (372)
T ss_dssp CHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------
T ss_pred eccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-cc---cchh
Confidence 788877777778887777 666667777776666333889999999999999999999999999999882 22 2588
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhh
Q 007262 414 KLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMS 493 (611)
Q Consensus 414 ~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 493 (611)
..++.+|++++.+++++.+..+..|.......+ ..+.+|.++..+++.++|.+..+...+..++.+|++..
T Consensus 288 ~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p 358 (372)
T PF00854_consen 288 PQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAP 358 (372)
T ss_dssp HHHHHHH-HHHHHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-S
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhh
Confidence 899999999999999998888755444333332 33447777999999999999999999966666666666
Q ss_pred HHHHHHHHHHH
Q 007262 494 SIAASLFGLGM 504 (611)
Q Consensus 494 g~~~g~~~~~~ 504 (611)
+..+|+++...
T Consensus 359 ~~m~~~~~~~~ 369 (372)
T PF00854_consen 359 SSMMGIWFALS 369 (372)
T ss_dssp SSSTHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-20 Score=200.66 Aligned_cols=178 Identities=12% Similarity=0.036 Sum_probs=135.9
Q ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007262 30 LITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSL 109 (611)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 109 (611)
++.++...+...+.....+... ...+++++ .|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFA-LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHH-hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHH
Confidence 3444433333333333333333 34456665 599999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
++.+++.+..+.. .+...+++.|++.|++.+...+....++.|++|+ ++|++++
T Consensus 103 ~~~~~~~~~~~~~-------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~-------~~rg~~~ 156 (438)
T TIGR00712 103 AVMLLMGFVPWAT-------------------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQ-------SERGTIV 156 (438)
T ss_pred HHHHHHhcccccc-------------------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCc-------ccchhHH
Confidence 8877765432111 1466778889999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-ccccchhhhHHHHHHHHHHHHHHHH
Q 007262 190 GWYYATSAIAVVIALTAIVYIQ-DHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~-~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
++++...++|+.+++.+.+.+. +..+||..|++.+++.++..+..+.
T Consensus 157 ~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 157 SIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888776544 4568999999887776655444333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-20 Score=198.67 Aligned_cols=393 Identities=10% Similarity=0.031 Sum_probs=222.6
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLL 110 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 110 (611)
+..+.+....++..++++.+.++++.|+++++|++..+.+.+.+.+.++..+++++.|+++||+ |||+++.++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 3566666777788888888899999999999999999999999999999999999999999997 999999887665554
Q ss_pred HHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHH
Q 007262 111 GMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFG 190 (611)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (611)
+..........+.. ........+++.+..+.+.....+... ++.++. .++++..++
T Consensus 89 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~g~~~g 144 (420)
T PRK09528 89 LFGPFFIYVFAPLL---------------QYNILLGAIVGGIYLGFGFLAGAGAIE----AYIERV-----SRRSGFEYG 144 (420)
T ss_pred HHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhhhccchhhhh----hHHHHH-----Hhhccccch
Confidence 43322111000000 000011112223333333333333333 332220 134566677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCCC
Q 007262 191 WYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALP 270 (611)
Q Consensus 191 ~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (611)
..+...++|..++|.+++++.+ .+|+++|++.+++.++..++.+..+++..+++...++ . .+
T Consensus 145 ~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~---~~ 206 (420)
T PRK09528 145 RARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA--------------L---GA 206 (420)
T ss_pred hhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc--------------h---hc
Confidence 7777889999999999998876 4899999887766655554443333221110000000 0 00
Q ss_pred CCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhhh
Q 007262 271 PPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINI 350 (611)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 350 (611)
+.+ +.+ +.+.. +..++ +.++............+..+
T Consensus 207 ~~~---------------~~~---~~~~~-------------------------~~l~~-~~~~~l~l~~~~~~~~~~~~ 242 (420)
T PRK09528 207 NAS---------------AVS---LKDAL-------------------------ALLKL-PKFWFLVLYVIGVACFYDVF 242 (420)
T ss_pred ccc---------------ccc---HHHHH-------------------------HHccC-CCeEeehHHHHHHHHHHHHH
Confidence 000 000 00000 00000 11111111111111111112
Q ss_pred cC--CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHH
Q 007262 351 SQ--NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGM 428 (611)
Q Consensus 351 ~q--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~ 428 (611)
.+ +.+ ..+. ..+...+ . ...+.+..+..+...+..++.++ +.+|+++| +.+..+.++.++++
T Consensus 243 ~~~~~~~-~~~~-~~~~~~~--~-~~~g~~~~~~~~~~~~~~~~~g~----l~dr~g~~-------~~~~~~~~l~~~~~ 306 (420)
T PRK09528 243 DQQFPNF-FASF-FATPEQG--T-RVFGYLNSFQVFLEALIMFFAPF----IINRIGAK-------NALLLAGTIMAVRI 306 (420)
T ss_pred HHHHHHH-HHHH-HhccCcc--h-HHHHHHHHHHHHHHHHHHHHHHH----HHHHhCcc-------hhhHHHHHHHHHHH
Confidence 22 222 1111 0011110 0 01223333444444455555444 44555433 23666677777766
Q ss_pred HHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHH-HHHHHHHH
Q 007262 429 VVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASL-FGLGMAVA 507 (611)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg 507 (611)
++.+..+ ++++++...++.+++.....+...+++.+..|++.+++..++ +++...+|
T Consensus 307 ~l~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg 364 (420)
T PRK09528 307 IGSGFAT----------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLG 364 (420)
T ss_pred HHHHhcc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHH
Confidence 6665442 445566667777888777777888898999999999988765 67778899
Q ss_pred HHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007262 508 NLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWA 564 (611)
Q Consensus 508 ~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 564 (611)
..+++.+.+.+.+..+ +...|.+.+++.++..++.++..++
T Consensus 365 ~~ig~~~~G~l~~~~G----------------~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 365 AVFLSTLAGNLYDSIG----------------FQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHhhC----------------chHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999998877542 3677887777777777666655554
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=206.05 Aligned_cols=146 Identities=15% Similarity=0.202 Sum_probs=126.9
Q ss_pred HHHHHhCCC---hhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 007262 57 YLMKDYHLG---VAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILT 133 (611)
Q Consensus 57 yl~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 133 (611)
.+.+++|++ ..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++.+++.
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~-------------- 178 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP-------------- 178 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc--------------
Confidence 456789998 89999999999999999999999999997 999999999999998888887765
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007262 134 QSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDH 213 (611)
Q Consensus 134 ~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~ 213 (611)
+++.+++.|++.|++.++..+...+++.|.+|+ ++|+...++...+..+|.++++.++..+.+
T Consensus 179 ---------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~- 241 (505)
T TIGR00898 179 ---------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPK-------KQRAIVGTLIQVFFSLGLVLLPLVAYFIPD- 241 (505)
T ss_pred ---------cHHHHHHHHHHHHhhccchHHHHHHHhheecCh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-
Confidence 688899999999999999999999999999999 889999998888888999999987665543
Q ss_pred ccchhhhHHHHHHHHHHHHHHHH
Q 007262 214 LGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 214 ~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
||+.|++.++..++..+..++
T Consensus 242 --wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 242 --WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred --HHHHHHHHHHHHHHHHHHHHh
Confidence 999998887766555544433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-18 Score=186.47 Aligned_cols=170 Identities=18% Similarity=0.126 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
+...+...+....+.......+| .+.+++|.+..+.+++.+++.++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHH
Confidence 33444556666666655555444 45677999999999999999999999999999999997 99999999999988888
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
+++..+. +.+.+++.|+++|++.+...+...+++.|.+|+ ++|++..++.
T Consensus 83 ~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~ 132 (392)
T PRK10473 83 LLCSLAE-----------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD-------RRRAKVLSLL 132 (392)
T ss_pred HHHHHhC-----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH-------HHHHHHHHHH
Confidence 8877654 567788899999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHH
Q 007262 193 YATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
+...++|..++|.+++.+.+..+|++.|++.+.+.++..++.
T Consensus 133 ~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 133 NGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888899999988876655554443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-19 Score=193.15 Aligned_cols=172 Identities=13% Similarity=0.083 Sum_probs=123.7
Q ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHH-HHHHH-----HHHHHHHHHHHHhhhccCchHHHHH
Q 007262 30 LITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVL-FFWTA-----ATNFMPILGAFLSDSYLGRFLTIGL 103 (611)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~-~~~~~-----~~~~~~~~~G~laD~~~Gr~~~~~~ 103 (611)
++....+++..+++.+-... .....+.+.++++.++.+.+... +.... ...+++++.|+++||+ |||+++..
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 91 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFL-FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIV 91 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHH
Confidence 33444444455555444433 45566688889999888765443 22222 2236788999999997 99999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcch
Q 007262 104 ASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNER 183 (611)
Q Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~ 183 (611)
+.+++.++.++++++++... ........++++|+++|++.+...+....+++|++|+ +
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~---------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~-------~ 149 (434)
T PRK15075 92 TLSIMASGTLLIAFVPGYAT---------------IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP-------G 149 (434)
T ss_pred HHHHHHHHHHHHHhCCcHHH---------------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc-------c
Confidence 99999999998887652110 0000012468899999999999999999999999999 8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHh--------hccccchhhhHHHHH
Q 007262 184 VLESFFGWYYATSAIAVVIALTAIVYI--------QDHLGWKVGFGVPAI 225 (611)
Q Consensus 184 ~r~~~~~~~~~~~~ig~~l~~~~~~~l--------~~~~gw~~~f~~~~~ 225 (611)
+|++.+++.....++|..+++.+++.+ .+.+|||+.|++...
T Consensus 150 ~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 150 RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 899999998888777777777766654 246899999987543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-19 Score=189.29 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=132.2
Q ss_pred HHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCC
Q 007262 57 YLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSC 136 (611)
Q Consensus 57 yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (611)
.+.+++|.+.++.++..+++.++..+++++.|+++||+ |||+++..+.+++.++.+++.++.
T Consensus 41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~----------------- 102 (413)
T PRK15403 41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT----------------- 102 (413)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC-----------------
Confidence 36778999999999999999999999999999999997 999999999999999988888765
Q ss_pred CCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 007262 137 ESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGW 216 (611)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw 216 (611)
+++.++++|+++|++.+...+...+++.|.+|+ ++|++.+++.....++|..++|.+++++.+..||
T Consensus 103 ------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw 169 (413)
T PRK15403 103 ------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQ-------TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHW 169 (413)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 678899999999999987777788889999998 8889999999999999999999999999988899
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 007262 217 KVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 217 ~~~f~~~~~~~~~~~~~~~~ 236 (611)
|+.|++.++..+++.+..+.
T Consensus 170 ~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 170 KVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999887776665554333
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-19 Score=188.48 Aligned_cols=360 Identities=11% Similarity=0.007 Sum_probs=221.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHH----HHHHHHHHHH
Q 007262 36 IIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTI----GLASFCSLLG 111 (611)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~----~~~~~~~~i~ 111 (611)
+.+..++...++-....++|.|++ ++|+|..+.+++.+.+.+...+++++.|+++||+ ||++.. .++..++.+
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~- 85 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAA- 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHH-
Confidence 344445555554455577778875 6899999999999999999999999999999997 985433 222222221
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
..+..++ +++.+++.|.+++.+.+...|...++..+. . ++|++.++.
T Consensus 86 -~~~~~~~-----------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~-------~~~~~~~g~ 132 (382)
T TIGR00902 86 -AFSAGAH-----------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--Q-------KQFGLDYGK 132 (382)
T ss_pred -HHHHhhh-----------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--H-------HHcCCCccH
Confidence 1222222 678888999999999988889988887553 3 456777888
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCCCC
Q 007262 192 YYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPP 271 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (611)
.....++|.+++|.+++++.+.+|||..|++...+.++.++. ...+++. ++++++..
T Consensus 133 ~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~------------------- 189 (382)
T TIGR00902 133 VRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIG-FLIKPTI---PPKDAIPE------------------- 189 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHcCCCC---CCCccccc-------------------
Confidence 888999999999999999999999999988765443322222 2222211 11000000
Q ss_pred CCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHH-HHHhHhHHhhh
Q 007262 272 PNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPL-WSTGIMMSINI 350 (611)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~ 350 (611)
.+ ...++.. .+..++ |.++..+.. ++........+
T Consensus 190 ~~------------------------------------------~~~~~~~-~~~l~~-~~~~~~l~~~~l~~~~~~~~~ 225 (382)
T TIGR00902 190 DE------------------------------------------SQGDSAF-IALLKN-PMNLRFLAAVCLIQGAHAAYY 225 (382)
T ss_pred cc------------------------------------------cccchhH-HHHHcC-hHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000 000111 222222211 11112111211
Q ss_pred cCCchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHH
Q 007262 351 SQNSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVV 430 (611)
Q Consensus 351 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~ 430 (611)
...+.++ +....+. ...+....+..+..++...+ .+++.+| .+.++.+.++.++..+.++.
T Consensus 226 ~~~~~~l-~~~g~s~-------~~~g~l~~~~~~~~i~~~~~----~~~l~~r-------~g~~~~l~~~~~~~~~~~~~ 286 (382)
T TIGR00902 226 GFSAIYW-QAAGISA-------SATGLLWGIGVLAEIIIFAF----SNKLFQN-------CSARDLLLISAIACVGRWAI 286 (382)
T ss_pred HHHHHHH-HHCCCCH-------hHHHHHHHHHHHHHHHHHHH----hHHHHhh-------CCHHHHHHHHHHHHHHHHHH
Confidence 1111111 1111111 11122222233333333333 2233344 35666788888888888877
Q ss_pred HHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHH-HHHHHHHH
Q 007262 431 SGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFG-LGMAVANL 509 (611)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~ 509 (611)
.+..+ +++.++...++.++..++..+....++.+. |++.|++++++++ +...+|..
T Consensus 287 ~~~~~----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~ 343 (382)
T TIGR00902 287 IGAIE----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIA 343 (382)
T ss_pred HHhHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHH
Confidence 76653 556667677999999999999999999988 9999999999986 46789999
Q ss_pred HHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHH
Q 007262 510 LASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVY 557 (611)
Q Consensus 510 l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~ 557 (611)
+++.+.+.+.+..+ ...|++.+++++++.++
T Consensus 344 ~g~~~~G~l~~~~g-----------------~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 344 IFTAFAGFIYPTLG-----------------AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHhcc-----------------HHHHHHHHHHHHHHHHH
Confidence 99999998876542 25577777777766544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=196.50 Aligned_cols=152 Identities=12% Similarity=0.138 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 007262 52 TNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNI 131 (611)
Q Consensus 52 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 131 (611)
....+++++++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.+++.++.
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------ 81 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------ 81 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh------------
Confidence 3445678889999999999999999999999999999999997 999999999999999988888765
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHHHHh
Q 007262 132 LTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIAL-TAIVYI 210 (611)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~-~~~~~l 210 (611)
+.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.+++.+...++|..++| .+.+.+
T Consensus 82 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 143 (379)
T TIGR00881 82 -----------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSR-------SERGTWVSFWNCSHNVGGGLLPPLVLFGI 143 (379)
T ss_pred -----------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCH-------hhheeeEeehhccchhHHHHHHHHHHHHH
Confidence 678899999999999999999999999999998 8899999999999999999999 566777
Q ss_pred hccccchhhhHHHHHHHHHHHHHH
Q 007262 211 QDHLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 211 ~~~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
.+..+|++.|++.+++.++..++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~ 167 (379)
T TIGR00881 144 AELYSWHWVFIVPGIIAIIVSLIC 167 (379)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHH
Confidence 778899999988776655544433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=192.28 Aligned_cols=394 Identities=12% Similarity=0.069 Sum_probs=234.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHH
Q 007262 70 TNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLIS 149 (611)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (611)
+.+++++.++.+++++++|+++||+ |||..+.++.++..++.++..++...+ ++.++++
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~--------------------~~e~li~ 121 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP--------------------SFEMLIL 121 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh--------------------hHHHHHH
Confidence 5678888999999999999999997 999999999998888888777665222 5789999
Q ss_pred HHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH-HHhh-ccccchhhhHHHHHHH
Q 007262 150 SFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAI-VYIQ-DHLGWKVGFGVPAILM 227 (611)
Q Consensus 150 ~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~-~~l~-~~~gw~~~f~~~~~~~ 227 (611)
+|++.|+..|......+.|+.|..|. +.||..-.....+..+|..++..++ ..+. ....|++.+.+..+..
T Consensus 122 GR~i~Gl~~gl~~~~~pmyl~E~sP~-------~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~ 194 (485)
T KOG0569|consen 122 GRLIVGLACGLSTGLVPMYLTEISPK-------NLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA 194 (485)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhcChh-------hhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999 9999988888888899999885543 3443 4456999988888877
Q ss_pred HHHHHHHHHhC--cccccc-CCCCchhHHHHHHHHHHHhhcccCCCCCCcccccccccCCcccccCchhhhhhhhhhccC
Q 007262 228 VLSLLLFFIAS--PLYVKL-KASSSLLTGFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRN 304 (611)
Q Consensus 228 ~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ 304 (611)
++.++++.+.+ |++.-. +.+.++.++..+. .+.+ ++. ....+ ...+........
T Consensus 195 ~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~----y~G~-----~~~----------~~~~e---~~~~e~~~~~~~- 251 (485)
T KOG0569|consen 195 LLQLALLPFLPESPKYLLIKKGDEEEARKALKF----YRGK-----EDV----------EAEIE---EMLREIEEEELE- 251 (485)
T ss_pred HHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHH----HhCC-----Ccc----------hhHHH---HHHHHHHHhccc-
Confidence 76666555443 333222 2222222111111 1110 000 00000 000000000000
Q ss_pred CCCCcCCCCCCCCCCC-cchhhHHHHHHHHHHHHHHHHHhHhHHhhhcCCchhhhhhhcccccCCCccccccccccchh-
Q 007262 305 PEQDIAPDGSALNPWS-LCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASSMDRHVTSSFQIPAGSFGTFT- 382 (611)
Q Consensus 305 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 382 (611)
.+....++ ..+ +...|+.++..+.+.+ ...+... ... .++...+-... | .+.......|
T Consensus 252 --------~~~~~sl~~~~~--~~~lR~~~~i~~~v~~-~qq~sGi---~ai-~~Yst~i~~~a--G--~~~~~a~~an~ 312 (485)
T KOG0569|consen 252 --------KKKQISLRQLLK--NPTLRRPLLIGIVVSF-AQQFSGI---NAI-FFYSTSIFKTA--G--FTPEEAQYANL 312 (485)
T ss_pred --------cccCCcHHHHhc--CcchhHHHHHHHHHHH-HHHhcCc---cee-HHHHHHHHHHc--C--CCHHHHHHHHH
Confidence 00011110 000 0112222222211111 1111110 111 11111111111 1 1122112222
Q ss_pred --HHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHH
Q 007262 383 --IITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAM 460 (611)
Q Consensus 383 --~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (611)
....++... +...+.+|++||+ .+++++.++.+..+++........... ..+.+.
T Consensus 313 ~~g~v~~~~t~----~~~~lid~~gRRp-------Lll~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~y~ 369 (485)
T KOG0569|consen 313 GIGIVNLLSTL----VSPFLIDRLGRRP-------LLLISLSLMAVALLLMSIALFLSNSFG------------SWLSYL 369 (485)
T ss_pred HHHHHHHHHHH----HHHHHHHhcCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh------------hHHHHH
Confidence 122222222 2333456665543 366667777766666655542211110 011222
Q ss_pred HHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchh
Q 007262 461 WLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRY 540 (611)
Q Consensus 461 ~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~ 540 (611)
.+...+.+.........|..+-+..|.+|++.|+.++++....+|+.+++.....+.+.+..+
T Consensus 370 ~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g----------------- 432 (485)
T KOG0569|consen 370 CIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG----------------- 432 (485)
T ss_pred HHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 233333444445556689999999999999999999999999999999999999999877664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccc
Q 007262 541 DNYYWLLAIMSLVNLVYFLVCSWAYGPCVDRVT 573 (611)
Q Consensus 541 ~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 573 (611)
.++|+++++.+++..+..++..||+|+|+-.|+
T Consensus 433 ~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI 465 (485)
T KOG0569|consen 433 PYVFILFVIPLAIFLIYLYRYLPETKGRTPYEI 465 (485)
T ss_pred chhhHHHHHHHHHHHHHHHHhCcccCCCCHHHH
Confidence 367888999999999999999999999986554
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-18 Score=185.52 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 007262 52 TNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNI 131 (611)
Q Consensus 52 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 131 (611)
..++.+ .+++|++..+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++.+++.++.
T Consensus 12 p~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~------------ 77 (377)
T PRK11102 12 PALPVI-AADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ------------ 77 (377)
T ss_pred ccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc------------
Confidence 445555 457999999999999999999999999999999997 999999999999999988887655
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 132 LTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQ 211 (611)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~ 211 (611)
+.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.+++.+...++|..++|.+++++.
T Consensus 78 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 78 -----------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPK-------EEFSRMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677789999999999999999999999999998 89999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHHHHHH
Q 007262 212 DHLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 212 ~~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
+.++|++.|++.+...++..++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 140 VWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHcChHHHHHHHHHHHHHHHHHH
Confidence 98999999988776665554443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=193.65 Aligned_cols=375 Identities=14% Similarity=0.146 Sum_probs=242.3
Q ss_pred HhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCC
Q 007262 61 DYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPT 140 (611)
Q Consensus 61 ~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (611)
+++++..|-+++.+.+..|..++++++|+++||+ |-|+++..+.++..++.++..++...
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~------------------- 126 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASI------------------- 126 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 6888999999999999999999999999999997 99999999999999999999987622
Q ss_pred chhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchhh
Q 007262 141 TAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDH-LGWKVG 219 (611)
Q Consensus 141 ~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~-~gw~~~ 219 (611)
+++.+++.|+++|++.|...|+...+.+.+.|+ .+|+++.++.+.+..+|.+++..+.|++.++ .||+.+
T Consensus 127 --~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~-------~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~si 197 (466)
T KOG2532|consen 127 --GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPP-------NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSI 197 (466)
T ss_pred --cchhhHHHHHHhHHHHhHHHhhhhceeeeECCH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchH
Confidence 345689999999999999999999999999999 9999999999999999999999999999998 999999
Q ss_pred hHHHHHHHHHHHHHHHHhCccccccCCCC--chhHHHHHHHHHHHhhcccCCCCCCcccccccccCCcccccCchhhhhh
Q 007262 220 FGVPAILMVLSLLLFFIASPLYVKLKASS--SLLTGFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLN 297 (611)
Q Consensus 220 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 297 (611)
|++.+.+.++..++++......+.+.+.- ++++.+ .+++..+.
T Consensus 198 fY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I-------~~~k~~~~---------------------------- 242 (466)
T KOG2532|consen 198 FYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYI-------EKGKSEAH---------------------------- 242 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHH-------Hhcccccc----------------------------
Confidence 99988887776665544332211111111 111110 00000000
Q ss_pred hhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHH-HHHHHHhHhHHhhhcC-CchhhhhhhcccccCCCcccccc
Q 007262 298 KACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKV-LPLWSTGIMMSINISQ-NSFPLLQASSMDRHVTSSFQIPA 375 (611)
Q Consensus 298 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~q-~~~~~~~~~~~~~~~~~~~~~~~ 375 (611)
.....+.||+..- .+ +.++.. +..+.....++.+.++ +++ +.....++... .
T Consensus 243 -------------~~~~~~vP~~~i~----ts-~~vwai~~~~f~~~~~~~~l~~y~PtY-~~~VL~f~v~~-------~ 296 (466)
T KOG2532|consen 243 -------------VKKKPPVPYKAIL----TS-PPVWAIWISAFGGNWGFYLLLTYLPTY-LKEVLGFDVRE-------T 296 (466)
T ss_pred -------------cCCCCCCCHHHHH----cC-HHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHhCCChhh-------h
Confidence 0000245774110 01 122222 1122222333333333 433 44444444322 5
Q ss_pred ccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccc
Q 007262 376 GSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVL 455 (611)
Q Consensus 376 ~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (611)
+++..+..+...+...+.+.+.|.+.+| . ...+..++..=.++....++.+++++...
T Consensus 297 G~~salP~l~~~~~k~~~g~lsD~l~~~-~-ls~t~~rkifn~i~~~~~ai~l~~l~~~~-------------------- 354 (466)
T KOG2532|consen 297 GFLSALPFLAMAIVKFVAGQLSDRLTFR-I-LSETTVRKIFNTIAFGGPAVFLLVLAFTS-------------------- 354 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-CchHhHHHHHHhHHHHHHHHHHHeeeecC--------------------
Confidence 5666677777777777777777666655 1 11111222223555555666666655542
Q ss_pred cchHHHHHHHHHHHhhhHHHHhhhhHhhhhcc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccC
Q 007262 456 EMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSE-FPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSN 534 (611)
Q Consensus 456 ~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~-~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~ 534 (611)
.-+. +....++.++.+.......+..--... +| +.-+..+|+.++..++..+++|.+++.+.. ++..+.|
T Consensus 355 ~~~~-~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~---~~t~~eW---- 425 (466)
T KOG2532|consen 355 DEHR-LLAVILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT---DNTREEW---- 425 (466)
T ss_pred CCcc-hHHHHHHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC---CCCHHHH----
Confidence 0011 111112222222222222222222223 44 669999999999999999999999988763 1133466
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHh
Q 007262 535 INKGRYDNYYWLLAIMSLVNLVYFLVCS 562 (611)
Q Consensus 535 ~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 562 (611)
..+|++.+++.+++.++|.++.
T Consensus 426 ------~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 426 ------RIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred ------HHHHHHHHHHHHHhchheeEee
Confidence 7889999999999988776664
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-18 Score=186.79 Aligned_cols=152 Identities=14% Similarity=0.077 Sum_probs=119.6
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLL 110 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 110 (611)
..+..+....+...+........ .+.+++++|+++.+.+++.+.+.++..+++++.|++.||+ |||+++.++.+++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~-~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 26 IPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYAL 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 33444444444545554444444 4456999999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHH
Q 007262 111 GMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFG 190 (611)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (611)
+.+++..+. . ..++..++++|+++|+|.|...+..++++.|..|+ ++|...++
T Consensus 104 ~~~l~~~~~-~-------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~-------~~~~~~~s 156 (438)
T PRK10133 104 GAALFWPAA-E-------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------SSGHFRLN 156 (438)
T ss_pred HHHHHHHHH-h-------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh-------hhHHHHHH
Confidence 987763211 0 11678899999999999999999999999987655 55555678
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 007262 191 WYYATSAIAVVIALTAIVYIQ 211 (611)
Q Consensus 191 ~~~~~~~ig~~l~~~~~~~l~ 211 (611)
.......+|..++|.+++.+.
T Consensus 157 ~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 157 LAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999988876543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-18 Score=185.01 Aligned_cols=389 Identities=12% Similarity=0.048 Sum_probs=226.9
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
..|.+....++...+......+++.|+++++|++..+.+++.+++.++..++.++.|+++||+ |||+.++.+.+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL 81 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 456666677788888888888999999999999999999999999999999999999999997 9999998876665554
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
..........+. ........+++.+++.|++.+...+....+..|..++ ++..++.
T Consensus 82 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~~~g~ 137 (396)
T TIGR00882 82 FAPFFIYVFGPL---------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN---------SNFEYGK 137 (396)
T ss_pred HHHHHHHHhhhH---------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh---------cccccch
Confidence 433221100000 0000233456678888999888888888877664322 2334566
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCCCC
Q 007262 192 YYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPP 271 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (611)
.....++|..++|.+++.+.+ .+|+..|++.+.+.++..++.+...++. ++++... +. .+ .+
T Consensus 138 ~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----------~~-~~-~~ 199 (396)
T TIGR00882 138 ARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSSATVA-----------NA-LG-AN 199 (396)
T ss_pred hhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chhhhhh-----------cc-cc-cc
Confidence 667788999999999888765 5999999888776665544433322211 1100000 00 00 00
Q ss_pred CCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhhhc
Q 007262 272 PNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINIS 351 (611)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (611)
.+ .. +. ++. .+..++ |.++..+...+.....+....
T Consensus 200 ~~--------------~~-~~------------------------~~~----~~~l~~-~~~~~~~l~~~~~~~~~~~~~ 235 (396)
T TIGR00882 200 AS--------------AF-SL------------------------KLA----LELFRQ-RKFWMFVLYVVGVACVYDVFD 235 (396)
T ss_pred cC--------------CC-CH------------------------HHH----HHHHcC-CcHHHHHHHHHHHHHHHHHHH
Confidence 00 00 00 000 000111 122222211111111111111
Q ss_pred CCchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHH
Q 007262 352 QNSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVS 431 (611)
Q Consensus 352 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~ 431 (611)
+ ....+......... .+. ...+....+..+...+..... .++.+|.++| +.+.++.++.++++...
T Consensus 236 ~-~~~~y~~~~~~~~~-~~~-~~~g~~~~~~~i~~~~~~~~~----g~l~~r~g~~-------~~l~~~~~l~~l~~~~~ 301 (396)
T TIGR00882 236 Q-QFANFFTSFFATPQ-QGT-RVFGYVTTMGELLNALIMFCA----PLIINRIGAK-------NALLIAGTIMSVRIIGS 301 (396)
T ss_pred H-HHHHHHHHhccccc-cch-HHHHHHHHHHHHHHHHHHHHH----HHHHHHhccc-------hhHHHHHHHHHHHHHHH
Confidence 1 01111111111100 000 011222333333333333333 3345555433 33666777667666554
Q ss_pred HHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHH-HHHHHHHHHHH
Q 007262 432 GLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASL-FGLGMAVANLL 510 (611)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~l 510 (611)
... .+.+++....++.+++.........++..+..|++.+++..++ ++....+|+.+
T Consensus 302 ~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~ 359 (396)
T TIGR00882 302 SFA----------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIF 359 (396)
T ss_pred Hhc----------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHH
Confidence 432 1455556666777777776666777788888899999887776 67889999999
Q ss_pred HHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHH
Q 007262 511 ASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFL 559 (611)
Q Consensus 511 ~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~ 559 (611)
++.+.+.+.+..+ +...|.+.+++.++..++..
T Consensus 360 ~~~l~G~l~~~~G----------------~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 360 LSTLAGNMYDSIG----------------FQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHhHHHHHHhcc----------------cHHHHHHHHHHHHHHHHHHH
Confidence 9999999876542 36778777777777666543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-18 Score=182.53 Aligned_cols=398 Identities=13% Similarity=0.061 Sum_probs=225.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 007262 36 IIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLL 115 (611)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~ 115 (611)
+.+..++...++-.+..+++.|+++++|++..+.|++.+.+.++..+++++.|+++||+.+||+++.++.++..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~ 86 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA 86 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 34455555566556668999999999999999999999999999999999999999997234778888877776766666
Q ss_pred HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCC-CCCcchhhhhHHHHHHH
Q 007262 116 WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKD-NPNNERVLESFFGWYYA 194 (611)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~ 194 (611)
.+.. +++.+++.|++.+++.+...+...++..+...+.. +-.+...|.+.++
T Consensus 87 ~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G---- 139 (418)
T TIGR00889 87 AQVT-----------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG---- 139 (418)
T ss_pred HHhc-----------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh----
Confidence 6544 56777888888898877777766655433322100 0000012233333
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCC-chhHHHHHHHHHHHhhcccCCCCCC
Q 007262 195 TSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASS-SLLTGFAQVAVVAYKNRKLALPPPN 273 (611)
Q Consensus 195 ~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (611)
.+|.+++|.+++.+.....|. +|++.+++.++..++.+ ..++.++++.+. ....+ .
T Consensus 140 --~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~----------~--------- 196 (418)
T TIGR00889 140 --TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAKSTAKMSIKV----------M--------- 196 (418)
T ss_pred --hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCccccccCHHH----------H---------
Confidence 478888888888774433354 45555544444333222 222211100000 00000 0
Q ss_pred cccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhhhcCC
Q 007262 274 ASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQN 353 (611)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~ 353 (611)
.++. ..+..++.+.+...+..++........+...
T Consensus 197 -------------------------------------------~~~~--~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (418)
T TIGR00889 197 -------------------------------------------LGLD--AFILFKNKRMAIFFFFSMLLGAPLQITNIFG 231 (418)
T ss_pred -------------------------------------------hhhh--HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhH
Confidence 0000 0000000010111111111111111111111
Q ss_pred chhhhhhhcccccCCCccc-cccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 007262 354 SFPLLQASSMDRHVTSSFQ-IPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSG 432 (611)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~ 432 (611)
+.+.. ....+...+.++. ...+....+..+..++...+.++ +.+|++ +++.+..+.++.++++.+..
T Consensus 232 ~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~----l~dr~g-------~r~~l~~~~~~~~v~~~l~~ 299 (418)
T TIGR00889 232 NGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPF----FLKRFG-------IKKVMLLSLVAWALRFGFFA 299 (418)
T ss_pred HHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHhC-------cHHHHHHHHHHHHHHHHHHH
Confidence 11111 1111110000000 01123333344444444444443 445543 34456777777777665554
Q ss_pred HHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHH-HHHHHHHHHH
Q 007262 433 LVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFG-LGMAVANLLA 511 (611)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~l~ 511 (611)
... +.....+.++...++.+++++...+....++.+.+|++.||+++|+.+ ..+.+|..+|
T Consensus 300 ~~~------------------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iG 361 (418)
T TIGR00889 300 YGD------------------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLG 361 (418)
T ss_pred HcC------------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 421 001123445556778888888888999999999999999999999997 5688999999
Q ss_pred HHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 007262 512 SAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYGPC 568 (611)
Q Consensus 512 ~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 568 (611)
+.+.+.+.+.++..+..+ ++..|++.+++.+++.+.++++.++.++.
T Consensus 362 p~l~G~l~~~~g~~~~~~----------~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 362 YILSGVMVEKMFAYGTFD----------WQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHhccccCCc----------hHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 999999887653211112 46788888888888888888888766443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-19 Score=193.89 Aligned_cols=420 Identities=14% Similarity=0.097 Sum_probs=246.7
Q ss_pred hhHHHHHHHHHHHhC-----CCh--hhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 007262 49 GLVTNMILYLMKDYH-----LGV--AKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMI 121 (611)
Q Consensus 49 ~~~~~~~~yl~~~~g-----~~~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~ 121 (611)
+..+.+..++++... .+. ++.+++.+.+.++..++.++.|+++|++ |||++++++.+++.+|.++++++.
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~-- 140 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP-- 140 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh--
Confidence 555666666665321 121 2448999999999999999999999997 999999999999999999999887
Q ss_pred CCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHH
Q 007262 122 PKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVV 201 (611)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 201 (611)
+...++++|++.|+|.|+.....+.+++|..|+ +.|+...+..+...++|..
T Consensus 141 ---------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~-------~~RG~l~~~~~l~~~~Gi~ 192 (513)
T KOG0254|consen 141 ---------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA-------HIRGTLVSLYQLFITIGIL 192 (513)
T ss_pred ---------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh-------hhhHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHhhcc--ccchhhhHHHHHHHHHHHHHHHHh--CccccccCCCCchhHHHHHHHHHHHhhcccCCCCCCcccc
Q 007262 202 IALTAIVYIQDH--LGWKVGFGVPAILMVLSLLLFFIA--SPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWC 277 (611)
Q Consensus 202 l~~~~~~~l~~~--~gw~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (611)
++.. .++...+ ++||..+.+..+..++..+.+++. .|++.-++.+..+..... ..++. .. ..+.
T Consensus 193 ~~~~-~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l----~~l~g--~~-~~~~---- 260 (513)
T KOG0254|consen 193 LGYC-INYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSL----KRLRG--LS-PEDV---- 260 (513)
T ss_pred HHHH-HhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHH----HHHhC--CC-Ccch----
Confidence 8864 4444443 489988888776655554443332 222222211111111111 11111 00 0000
Q ss_pred cccccCCcccccCchhhhhh--hhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhhhcCCch
Q 007262 278 YHRQKDSLLIVPTSKLRFLN--KACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSF 355 (611)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~ 355 (611)
......+. ........+ . +..|..+.. ...+|+.+..+.+..++.. ..++.
T Consensus 261 ------------~~~~~~~~~~~~~~~~~~~------~--~~~~~~l~~--~~~~~~~~i~~~l~~fqq~--tG~~~--- 313 (513)
T KOG0254|consen 261 ------------EVELELLKIKLLVEAEVAE------G--KASWGELFS--PKVRKRLIIGLLLQLFQQL--TGINY--- 313 (513)
T ss_pred ------------HHHHHHHHHHHHHhhhccc------c--cccHHHhcC--cchHHHHHHHHHHHHHHHH--hCCce---
Confidence 00000000 000000000 0 001111110 1122333322222221111 11111
Q ss_pred hhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007262 356 PLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVE 435 (611)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~ 435 (611)
..++...+-... +.+.+......+..+..++...+... +.+|.+|| +.+..|.+.+.+++++++...
T Consensus 314 ~~~Y~~~if~~~--g~~~~~~~~~~~~~~v~~~~t~~~~~----lvd~~gRr-------~lll~s~~~m~~~~~~~~~~~ 380 (513)
T KOG0254|consen 314 VFYYSTTIFKSA--GLKSDTFLASIILGVVNFLGTLVATY----LVDRFGRR-------KLLLFGAAGMSICLVILAVVG 380 (513)
T ss_pred EEeehHHHHHhc--CCCCchHHHHHHHHHHHHHHHHHHHH----HHHHhccH-------HHHHHhHHHHHHHHHHHHHHH
Confidence 011111111111 11111111111112222222222223 33454333 347888888888888877663
Q ss_pred HHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007262 436 NIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIV 515 (611)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~ 515 (611)
....+.. +......+..++..+++.........+..+.+..+.+|.+.|+.+.++....+++.+.+.....
T Consensus 381 ~~~~~~~---------~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~ 451 (513)
T KOG0254|consen 381 VFALYYP---------NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFF 451 (513)
T ss_pred HHhccCC---------CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 1110000 0011234555555666666667777888888999999999999999999999999999887766
Q ss_pred HhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHH-HHHHHhhccCcccccccccC
Q 007262 516 SAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLV-YFLVCSWAYGPCVDRVTSVG 576 (611)
Q Consensus 516 ~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~ 576 (611)
+......+ ....|+.+++.+.+... +.+++.+|+|+++.||++..
T Consensus 452 ~~~~~~~~----------------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~ 497 (513)
T KOG0254|consen 452 PFITEALG----------------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINEL 497 (513)
T ss_pred HHHHHhcc----------------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHH
Confidence 66543221 02456666777777777 78889999999999887653
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-18 Score=208.63 Aligned_cols=154 Identities=11% Similarity=0.114 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChh--hhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVA--KGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSL 109 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 109 (611)
.+...++..++..+...+....+..++...++.+.+ ..+++.+++.++..++++++|+++||+ |||++++++.++.+
T Consensus 10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~ 88 (1146)
T PRK08633 10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEV 88 (1146)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHH
Confidence 344444555565555555555566666666776544 468889999999999999999999997 99999998887766
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
++.++..++.. ..+++.+++.|+++|++.+...++..++++|.+|+ ++|++++
T Consensus 89 ~~~~~~~~~~~--------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~ 141 (1146)
T PRK08633 89 GLTLLIVLAYY--------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK-------ENLSRAN 141 (1146)
T ss_pred HHHHHHHHHHH--------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc-------ccchhhh
Confidence 65555443320 01578899999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 007262 190 GWYYATSAIAVVIALTAIVYIQDH 213 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~~~ 213 (611)
++...+.++|.++++.+++++.+.
T Consensus 142 ~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 142 GLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998765
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-18 Score=182.05 Aligned_cols=178 Identities=8% Similarity=0.035 Sum_probs=131.0
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMK-DYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSL 109 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 109 (611)
|.+++.. ..+...+....+.+.+...+.+ ++|+|.+|.+++.+++.++..++.++.|++.||+ |.|+++.++.++..
T Consensus 34 r~l~~s~-~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISV-SCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 4454433 3344445555555555666655 8999999999999999999999999999999997 99999999999998
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
+.+++.+++...+ ..++..+++.|++.|++ +...+.....+++++|+ ++|++++
T Consensus 112 i~~~~~~~a~~~~------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~-------~~rG~A~ 165 (462)
T PRK15034 112 IPCVWLGIAVQNP------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK-------AKQGSAL 165 (462)
T ss_pred HHHHHHHHHHccc------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH-------hHhHHHH
Confidence 8888887651000 02688899999999998 77889999999999999 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-----c-------------cccchhhhHHHHHHHHHHHHHHHH
Q 007262 190 GWYYATSAIAVVIALTAIVYIQ-----D-------------HLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~-----~-------------~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
++.....++|..+++.+.+.+. . ..+|+.++++..++.++..++.++
T Consensus 166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9986666666665554443322 2 234676666666655555544444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-18 Score=208.34 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=107.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH--HHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhh
Q 007262 67 AKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASF--CSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQM 144 (611)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (611)
...+++.+++.+...++.+++|+++||+ |||+++..... +......+..+.. .++
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~----------------------~s~ 108 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL----------------------NSV 108 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH----------------------hhH
Confidence 3467778888999999999999999997 99998644222 2221211222211 167
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHH
Q 007262 145 TLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPA 224 (611)
Q Consensus 145 ~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~ 224 (611)
+.++++|+++|++.+...|+..+++.|++|+ ++|++++++.+++.++|.+++|.++|++....+|++.|++.+
T Consensus 109 ~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~-------~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~ 181 (1140)
T PRK06814 109 PLLFAALFLMGIHSALFGPIKYSILPDHLNK-------DELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLM 181 (1140)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHhhHhhcCc-------cccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 8899999999999999999999999999999 889999999999999999999999999999999999885444
Q ss_pred HHHHHHHH
Q 007262 225 ILMVLSLL 232 (611)
Q Consensus 225 ~~~~~~~~ 232 (611)
+..+++++
T Consensus 182 ~~~~~~~~ 189 (1140)
T PRK06814 182 GIAVLGWL 189 (1140)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-17 Score=177.61 Aligned_cols=338 Identities=10% Similarity=0.009 Sum_probs=199.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCch----HHHHHHHHHHHHHHHHH
Q 007262 40 EAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRF----LTIGLASFCSLLGMFLL 115 (611)
Q Consensus 40 ~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~----~~~~~~~~~~~i~~~~~ 115 (611)
.++-.++...+..+++.|++ ++|.|..+.|++.+++.+...++.++.|+++||+ ||+ +.+.+..++.. ....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~--~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFA--VAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHH--HHHH
Confidence 34444555556677888885 5899999999999999999999999999999997 984 33332222211 1111
Q ss_pred HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHH
Q 007262 116 WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYAT 195 (611)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (611)
..++ +.+.+++.|++.|++.+...|...++..+. . ++|++.++..+..
T Consensus 89 ~~~~-----------------------~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~-------~~~~~a~~~~~~~ 136 (382)
T PRK11128 89 FGAH-----------------------SFWLLFVAIGLFNLFFSPLVPLTDALANTW--Q-------KQIGLDYGKVRLW 136 (382)
T ss_pred Hhcc-----------------------cHHHHHHHHHHHHHHHcccccHHHHHHHHH--H-------hhccCCcchHHHH
Confidence 1112 678888999999999999999988888776 2 3355667777777
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCCCCCCcc
Q 007262 196 SAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNAS 275 (611)
Q Consensus 196 ~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (611)
.++|..++|.+++++.+++|||..|++.++..++..+... ..++ .++++++.+ + .++.
T Consensus 137 ~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~-----------~-----~~~~-- 194 (382)
T PRK11128 137 GSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPT---IMPQGESRQ-----------Q-----ESAG-- 194 (382)
T ss_pred HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCC---CCCcccccc-----------c-----cccc--
Confidence 7899999999999999999999999877654444333222 2221 111110000 0 0000
Q ss_pred cccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHH-HHHhHhHHhhhcCCc
Q 007262 276 WCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPL-WSTGIMMSINISQNS 354 (611)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~q~~ 354 (611)
...+ .+....+.++..+.. ++........+....
T Consensus 195 ----------------------------------------~~~~-----~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 229 (382)
T PRK11128 195 ----------------------------------------WPAW-----KALLKEPTVWRFLLCVSLLQGSHAAYYGFSA 229 (382)
T ss_pred ----------------------------------------cchH-----HHHHcChhHHHHHHHHHHHHHHhHhHHHHHH
Confidence 0000 011111222222221 111111111111111
Q ss_pred hhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 007262 355 FPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLV 434 (611)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~ 434 (611)
.+.. +.+.. ....+.+..++.+..++...+ ..++.+|. +.++.+..+.++.+++++..+..
T Consensus 230 --~~~~---~~g~s---~~~~g~~~~~~~~~~~~~~~~----~g~l~~r~-------~~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T PRK11128 230 --IYWQ---AAGYS---ASTIGYLWSLGVVAEVLIFAF----SNRLFRRW-------SARDLLLLSAICGVVRWGLMGST 290 (382)
T ss_pred --HHHH---HCCCC---HhHHHHHHHHHHHHHHHHHHH----HHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111 11110 011222223333333333333 33344443 44555677777777776655544
Q ss_pred HHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHH
Q 007262 435 ENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFG-LGMAVANLLASA 513 (611)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~l~~~ 513 (611)
+ +.+.+++..++.+++.+...+....+..+. |++.+++++++.+ ..+.+|..+|+.
T Consensus 291 ~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~ 347 (382)
T PRK11128 291 T----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTV 347 (382)
T ss_pred h----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 456667778888999999899999888887 5555788999876 556788889999
Q ss_pred HHHhhhhhc
Q 007262 514 IVSAVDDIT 522 (611)
Q Consensus 514 i~~~i~~~~ 522 (611)
+.+.+.+..
T Consensus 348 i~G~l~~~~ 356 (382)
T PRK11128 348 LSGFLYQHL 356 (382)
T ss_pred HHHHHHHhc
Confidence 999887654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-17 Score=179.85 Aligned_cols=375 Identities=14% Similarity=0.077 Sum_probs=236.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 007262 37 IANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLW 116 (611)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~ 116 (611)
....++.+++......-++ ++..++.-|+...+.+..+..+-..+..+++|.++||+ .|||+++.+-++..+....+.
T Consensus 16 w~a~~iS~lG~~~~~va~~-wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~L~ 93 (524)
T PF05977_consen 16 WIAQLISNLGDWMQTVALA-WLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALLLA 93 (524)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHH
Confidence 3455555555443333333 33445677888999999999999999999999999997 999999999887766555544
Q ss_pred HhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHH
Q 007262 117 LTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATS 196 (611)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 196 (611)
+..... .-+.+.+++.-++.|++.+...|+..+++.|..|+ ++...+.++.....
T Consensus 94 ~l~~~~------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~-------~~L~~A~al~s~~~ 148 (524)
T PF05977_consen 94 VLAFFG------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK-------EDLPAANALNSISF 148 (524)
T ss_pred HHHHhC------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-------hhHHHHHHHHHHHH
Confidence 332111 22678888889999999999999999999999999 88999999999999
Q ss_pred HHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCCCCCCccc
Q 007262 197 AIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASW 276 (611)
Q Consensus 197 ~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (611)
|+...+||.++|.+....|-.+.|.+.++..++.++++...++...+ +..+.+.+.+.+...++
T Consensus 149 niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~---~~~~~e~~~~~l~~G~r------------- 212 (524)
T PF05977_consen 149 NIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPP---SSLPRERFFSALREGLR------------- 212 (524)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc---cccchhhhhhhHHHHHH-------------
Confidence 99999999999999988898889998887666554444333322111 11110111111000000
Q ss_pred ccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHH-HHHhHhHHhhhcCCch
Q 007262 277 CYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPL-WSTGIMMSINISQNSF 355 (611)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~q~~~ 355 (611)
.+...+.+...+.. .++.......+.....
T Consensus 213 -------------------------------------------------yv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl 243 (524)
T PF05977_consen 213 -------------------------------------------------YVRSSPPLRSVLLRSFLFNLFASAVWALLPL 243 (524)
T ss_pred -------------------------------------------------HHhcchHHHHHHHHHHHHHHhhhHHHHhhhH
Confidence 00011111111110 0111100000000111
Q ss_pred hhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007262 356 PLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVE 435 (611)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~ 435 (611)
+....++... ...+.+.....++.++...+..+ +.+| .+..+.+..+.++.+++++.++...
T Consensus 244 --~a~~~l~~~a-----~~yGll~a~~gvGai~Gal~~~~----l~~~-------~~~~~lv~~~~~~~a~~~~~lal~~ 305 (524)
T PF05977_consen 244 --FARDVLGGGA-----SGYGLLLAAFGVGAILGALLLPR----LRRR-------LSSRRLVLLASLLFALALLLLALSP 305 (524)
T ss_pred --HHHHHhCCcH-----HHHHHHHHHHHHHHHHHHHHHHH----hhcc-------cCcchhhHHHHHHHHHHHHHHhcch
Confidence 1111111111 11233344444444444443222 2222 2344456677777777777766653
Q ss_pred HHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007262 436 NIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIV 515 (611)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~ 515 (611)
+.+...+.+++.|++.....+..++.+...+|+++||++.|++++....+..+|..+.
T Consensus 306 ----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~ 363 (524)
T PF05977_consen 306 ----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLW 363 (524)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677788889999999999999999999999999999999999999999999999
Q ss_pred HhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHH
Q 007262 516 SAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFL 559 (611)
Q Consensus 516 ~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~ 559 (611)
|.+.+..+ ....+.+.++..+++.++.+
T Consensus 364 G~la~~~g----------------~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 364 GFLADHFG----------------VRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHhC----------------HHHHHHHHHHHHHHHHHHHH
Confidence 98876553 23455555555555555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.1e-17 Score=177.69 Aligned_cols=173 Identities=13% Similarity=0.102 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhc----cCchHH-HHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSY----LGRFLT-IGLASF 106 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Gr~~~-~~~~~~ 106 (611)
..+.++...+......+.....++.|+++ .|.+.++.+... ..... .++.++.|+++||+ +||||. +.++.+
T Consensus 13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i 89 (491)
T PRK11010 13 NSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQL 89 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence 35555556666666666666677777665 588988888762 22222 36889999999994 188875 556666
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhh
Q 007262 107 CSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLE 186 (611)
Q Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (611)
+..++...+++.. | ..+++.+.+.+++.+++.+...+...+++.|++|+ ++|+
T Consensus 90 ~~~~~~~~~a~~~--~------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~-------~~rg 142 (491)
T PRK11010 90 LLLVAIAAMGFLE--P------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPA-------EERG 142 (491)
T ss_pred HHHHHHHHHHHcC--C------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-------hhhH
Confidence 6667766666532 1 12577788889999999999999999999999998 8899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc-cccchhhhHHHHHHHHHHHHHH
Q 007262 187 SFFGWYYATSAIAVVIALTAIVYIQD-HLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 187 ~~~~~~~~~~~ig~~l~~~~~~~l~~-~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
++.++...+..+|..+++.+.+++.+ ..|||..|++.+++.++..+..
T Consensus 143 ~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~ 191 (491)
T PRK11010 143 AGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT 191 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988 5799999999877665554443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.1e-18 Score=178.21 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhC--CChhhhhHHHHHH-----HHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 007262 52 TNMILYLMKDYH--LGVAKGTNVLFFW-----TAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKV 124 (611)
Q Consensus 52 ~~~~~yl~~~~g--~~~~~~~~~~~~~-----~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~ 124 (611)
.+...++.+++. .++.+.+.+.+.. .++..++.++.|+++||+ |||+++.++.++..++.+++.++.+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~- 90 (394)
T TIGR00883 13 GFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT- 90 (394)
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh-
Confidence 345566666654 4455555544432 223346889999999997 9999999999999999888887552111
Q ss_pred CCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHH
Q 007262 125 KPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIAL 204 (611)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~ 204 (611)
........++++|+++|++.+...+...+++.|.+|+ ++|+...++.+.+..+|..+++
T Consensus 91 --------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~ 149 (394)
T TIGR00883 91 --------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP-------GKRGFYGSFQQVGAPVGLLLAA 149 (394)
T ss_pred --------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc-------ccchHHHHHHHHHHHHHHHHHH
Confidence 0001123578899999999999999999999999998 8889999999999999999998
Q ss_pred HHHHHhh--------ccccchhhhHHHHHHHHHHH
Q 007262 205 TAIVYIQ--------DHLGWKVGFGVPAILMVLSL 231 (611)
Q Consensus 205 ~~~~~l~--------~~~gw~~~f~~~~~~~~~~~ 231 (611)
.+.+.+. +.++||+.|++.+...+++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 150 LTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 8766553 35789999988766554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-17 Score=180.90 Aligned_cols=354 Identities=12% Similarity=0.084 Sum_probs=212.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhc---cCchH-HHHHHHHHHHHHHHHHH
Q 007262 41 AFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSY---LGRFL-TIGLASFCSLLGMFLLW 116 (611)
Q Consensus 41 ~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~-~~~~~~~~~~i~~~~~~ 116 (611)
+...+....+..+++.|+++++|+++.++|++.++..+...+..|+.|+++||. +|||| .++++...+.++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 344555556668899999999999999999999999999999999999999983 37744 66677777777777776
Q ss_pred HhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHH
Q 007262 117 LTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATS 196 (611)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 196 (611)
..++.+. ......+++.+++.+++.+.......++..|..+++ ++|++..++.....
T Consensus 89 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~~R~~~~~~~~~~~ 145 (437)
T TIGR00792 89 TTPDFSA-----------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP------RERESLSTFRRFGA 145 (437)
T ss_pred hCCCCCc-----------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH------HHHHHHHHHHHHHH
Confidence 5431111 123456677788888888888888889999987642 77888888888888
Q ss_pred HHHHHHHHHHHHHhh-------ccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCC
Q 007262 197 AIAVVIALTAIVYIQ-------DHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLAL 269 (611)
Q Consensus 197 ~ig~~l~~~~~~~l~-------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (611)
++|..+++.+.+.+. +..+|++.+.+.+++.++..++.+...++..++++..++
T Consensus 146 ~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~------------------- 206 (437)
T TIGR00792 146 TLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE------------------- 206 (437)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc-------------------
Confidence 888777766554443 246899988877766655544433322221100000000
Q ss_pred CCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhh
Q 007262 270 PPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSIN 349 (611)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (611)
+ + . +..+. + +.....|.++..+...+.....+..
T Consensus 207 ---~--------~-------~---~~~~~--------------------~-----~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (437)
T TIGR00792 207 ---K--------K-------L---SLKQI--------------------F-----KALFKNDQLLILCLAYLFYNLAFNI 240 (437)
T ss_pred ---c--------C-------C---CHHHH--------------------H-----HHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 00000 0 0000112222221111111111111
Q ss_pred hcC-CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHH
Q 007262 350 ISQ-NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGM 428 (611)
Q Consensus 350 ~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~ 428 (611)
... ..++.. ...+. . ...+.+..+..+..++..++..+ +.+|+++ ++.+..+.+++++++
T Consensus 241 ~~~~~~~~~~--~~~~~-~-----~~~~~~~~~~~i~~ii~~~~~~~----l~~r~g~-------~~~~~~~~~~~~~~~ 301 (437)
T TIGR00792 241 KNGVQVYYFT--YVLGD-P-----ELFSYMGSIAIVAGLIGVLLFPR----LVKKFGR-------KILFAGGILLMVLGY 301 (437)
T ss_pred HcchhheeEe--eecCC-h-----HHHHHHHHHHHHHHHHHHHHHHH----HHHHhCc-------HHHHHHHHHHHHHHH
Confidence 111 111111 00110 0 01122223334444445555444 4455432 334566766666666
Q ss_pred HHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCC-------chhhHHHHHHHH
Q 007262 429 VVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFP-------KSMSSIAASLFG 501 (611)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~ 501 (611)
++..... .+.+..+...++.+++.+...+..++++.+..| ++.+|.+.|+++
T Consensus 302 ~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 360 (437)
T TIGR00792 302 LIFFFAG---------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRT 360 (437)
T ss_pred HHHHHcc---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHH
Confidence 5544321 133444556677788888888888888887764 567899999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhc
Q 007262 502 LGMAVANLLASAIVSAVDDIT 522 (611)
Q Consensus 502 ~~~~lg~~l~~~i~~~i~~~~ 522 (611)
+...+|..+++.+.+.+.+..
T Consensus 361 ~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 361 FVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999987755
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-18 Score=178.67 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
.+...+..++.....+.....+|.++++++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 44455566666666666767777789999999999999999999999999999999999997 99999999999999998
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
+++.++. .+++.+++.|+++|++.+. .+...++++|.+|+ ++|++..+++
T Consensus 82 ~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-------~~r~~~~~~~ 131 (366)
T TIGR00886 82 LWAGLAV----------------------QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPK-------KIQGTALGLA 131 (366)
T ss_pred HHHHHHh----------------------hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCH-------hhhhHHHHHH
Confidence 8877643 0467788999999999654 46678899999998 8899999998
Q ss_pred HHHHHHHHHHHHHHHHHhhc----------cccchhhhHH
Q 007262 193 YATSAIAVVIALTAIVYIQD----------HLGWKVGFGV 222 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~----------~~gw~~~f~~ 222 (611)
....++|..+++.+++.+.. ..+||+.|++
T Consensus 132 ~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 132 AGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 87777887777777665543 3489999843
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-17 Score=174.29 Aligned_cols=148 Identities=12% Similarity=0.146 Sum_probs=122.4
Q ss_pred hhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007262 48 YGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPS 127 (611)
Q Consensus 48 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 127 (611)
+.....+.+.+++++|++.++.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.+ .+.
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~-------- 85 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP-------- 85 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc--------
Confidence 33444455677889999999999999999999999999999999997 99999999988877777665 333
Q ss_pred CCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 007262 128 PCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAI 207 (611)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~ 207 (611)
+.+.+++.|++.|+|.+...+..+.++.|.+| ++|++.+++++...++|..+++.+.
T Consensus 86 ---------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~i~~~~~ 142 (355)
T TIGR00896 86 ---------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP--------QRVGLMTGLYSMALMGGAALAAAAT 142 (355)
T ss_pred ---------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc--------chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999988888888888774 4578899999999999999999998
Q ss_pred HHhhccc--cchhhhHHHHHHHH
Q 007262 208 VYIQDHL--GWKVGFGVPAILMV 228 (611)
Q Consensus 208 ~~l~~~~--gw~~~f~~~~~~~~ 228 (611)
+.+.+.. +||+.|.+.+...+
T Consensus 143 ~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 143 VPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHH
Confidence 8887654 39988876654433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-17 Score=176.70 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 007262 52 TNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNI 131 (611)
Q Consensus 52 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 131 (611)
.....++..++|-+ ....|+.+.+.++..+..++.|+++|.+ |||..++++.++..+|.++++.+.
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------ 129 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------ 129 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC------------
Confidence 45567888999865 6778999999999999999999999996 999999999999999999998766
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 132 LTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQ 211 (611)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~ 211 (611)
+...++++..+.|+|.|... .....++|..|. +.|.....+.....-+....++.+...+.
T Consensus 130 -----------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~-------k~R~~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 130 -----------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPN-------KWRGLGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred -----------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhccc-------chhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence 67779999999999977765 456668999998 77776666555444444445666666666
Q ss_pred ccccchhhhHHHHHHHHHHHHH
Q 007262 212 DHLGWKVGFGVPAILMVLSLLL 233 (611)
Q Consensus 212 ~~~gw~~~f~~~~~~~~~~~~~ 233 (611)
...+|||.|++..+...+++++
T Consensus 191 ~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 191 AHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred cCCCcchHHHHHHHHHHHHHHH
Confidence 6678999999988766555443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-16 Score=169.95 Aligned_cols=156 Identities=13% Similarity=0.139 Sum_probs=130.8
Q ss_pred hhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007262 48 YGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPS 127 (611)
Q Consensus 48 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 127 (611)
+++...+.+.+++++|++..+.+++.+.+.++..++.++.|++.||+ |||+++.++.+++.++.++...+..
T Consensus 19 ~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~l~~~~~~------- 90 (410)
T TIGR00885 19 NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAFLFWPAAE------- 90 (410)
T ss_pred HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 35555566777999999999999999999999999999999999997 9999999999999999877654320
Q ss_pred CCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 007262 128 PCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAI 207 (611)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~ 207 (611)
..+++.+++.|++.|+|.|...+...+++.+..|+ ++|++..++.+...++|..++|.+.
T Consensus 91 -------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lG~~~g~~i~ 150 (410)
T TIGR00885 91 -------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE-------STATRRLNLAQSFNPFGSIIGMVVA 150 (410)
T ss_pred -------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12578889999999999999999999999999888 7788889999999999999999988
Q ss_pred HHhhcc--------------------------ccchhhhHHHHHHHHHHH
Q 007262 208 VYIQDH--------------------------LGWKVGFGVPAILMVLSL 231 (611)
Q Consensus 208 ~~l~~~--------------------------~gw~~~f~~~~~~~~~~~ 231 (611)
+.+... .+||++|++.+.+.++..
T Consensus 151 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 151 QQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred HHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776422 369999987776554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-16 Score=164.31 Aligned_cols=390 Identities=13% Similarity=0.037 Sum_probs=248.4
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
.++|.+++ ....+...+.-+.+...+..++++++|+|..|.+++..+..+...+..++-|.+.||+ |-|++..++.++
T Consensus 11 ~~~~~L~~-S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l 88 (417)
T COG2223 11 IARRNLWL-STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLL 88 (417)
T ss_pred chhHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHH
Confidence 45555554 3445555566666777788889999999999999999999999999999999999997 888888888888
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
..+-.+..+++...| +++.+++.+++.|++ |+..+...++++..||+ +..|.
T Consensus 89 ~~IP~~~~~~a~~~~--------------------~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~-------~~qG~ 140 (417)
T COG2223 89 LLIPCLGLAFAVTYP--------------------STWQLLVIGLLLGLA-GASFAVGMPNASFFFPK-------EKQGL 140 (417)
T ss_pred HHHHHHHHHHHccCC--------------------chHHHHHHHHHHhcc-cceehcccccccccCCh-------hhhhH
Confidence 888777777776333 346889999999998 66678889999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc---chhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhh
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLG---WKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKN 264 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~g---w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (611)
+++++. ..|+|..+.-.+.+.+....+ |+....+..+..++..+.+++..+..++.++..++... .
T Consensus 141 AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~-------- 209 (417)
T COG2223 141 ALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--A-------- 209 (417)
T ss_pred HHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--h--------
Confidence 999999 889999999999998888888 99988888888777777666654432221111111000 0
Q ss_pred cccCCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHH-HHHHHHHh
Q 007262 265 RKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIK-VLPLWSTG 343 (611)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 343 (611)
.+ +.+..++..+. .+......
T Consensus 210 ------------------------------~~----------------------------~~v~~~~~~W~lsllY~~tF 231 (417)
T COG2223 210 ------------------------------QL----------------------------KAVFSNKDTWLLSLLYFATF 231 (417)
T ss_pred ------------------------------HH----------------------------HHHhcCcchHHHHHHHHHHH
Confidence 00 00111111222 22211111
Q ss_pred HhHHhhhcCCchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHH
Q 007262 344 IMMSINISQNSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFL 423 (611)
Q Consensus 344 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l 423 (611)
..+...-.+ .++.+..+.+ -.....+......++...+.-|+.+++.| | ++..+.+.+.+.+
T Consensus 232 G~Fvgfs~~------l~~~~~~~fg-~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsD----R-------~Gg~rv~~~~f~~ 293 (417)
T COG2223 232 GGFVGFSAY------LPMYLVTQFG-LSPVTAGLIAFLFPLIGALARPLGGWLSD----R-------IGGRRVTLAVFVG 293 (417)
T ss_pred HHHHHHHHH------HHHHHHHhcC-CChhhHHHHHHHHHHHHHHHHhccchhhh----h-------ccchhHHHHHHHH
Confidence 111111111 1111111121 00022233344444444444555444433 3 3444457777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHH
Q 007262 424 SCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLG 503 (611)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~ 503 (611)
++++.++.+..... .. ...+....+..++..++..++.+....-.+...+|+ +.|.+.|+....
T Consensus 294 ~~~~~~~l~~~~~~------------~~---~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~ 357 (417)
T COG2223 294 MALAAALLSLFLTG------------FG---HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAI 357 (417)
T ss_pred HHHHHHHHHccccc------------cc---cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHh
Confidence 77777776654200 00 012333333334444444444444455555555554 578888888888
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007262 504 MAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAY 565 (611)
Q Consensus 504 ~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 565 (611)
.++|++.-+...+...+.++ .+...|+++....+++.++.+.++.+.
T Consensus 358 G~lGGf~lp~~~g~~~~~tg---------------~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 358 GGLGGFFLPLAFGVSLDLTG---------------SYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred ccccccchhHHHHHHHHhcc---------------cHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88998888888777766553 346789999999999999888887664
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-15 Score=162.99 Aligned_cols=164 Identities=15% Similarity=0.073 Sum_probs=127.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhcc----CchH-HHHHHHHHHHHHHH
Q 007262 39 NEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYL----GRFL-TIGLASFCSLLGMF 113 (611)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~----Gr~~-~~~~~~~~~~i~~~ 113 (611)
..+...+...-...-+|.|+++ .|++.++.|++..+... .+..++.|+++||+. |||| .+.++.++..++..
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~ 83 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA 83 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence 4444555555555678888886 59999999999766665 689999999999961 6765 67777777777777
Q ss_pred HHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHH
Q 007262 114 LLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYY 193 (611)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (611)
.+.+.. + ..+.+.+++..++.++..+...++..+++.|++|+ ++|+++.++..
T Consensus 84 ~l~~~~--~------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~-------~~r~~~~~~~~ 136 (402)
T PRK11902 84 AMAFCP--P------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP-------EERGAGAAVKV 136 (402)
T ss_pred HHHhcC--c------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-------hhhhHHHHHHH
Confidence 666542 0 12466677777777888889999999999999998 88999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc-ccchhhhHHHHHHHHHHHH
Q 007262 194 ATSAIAVVIALTAIVYIQDH-LGWKVGFGVPAILMVLSLL 232 (611)
Q Consensus 194 ~~~~ig~~l~~~~~~~l~~~-~gw~~~f~~~~~~~~~~~~ 232 (611)
.+.++|..+++.+.+++.+. .|||..|++.++..++..+
T Consensus 137 ~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 137 LGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 98899999999998888885 5999999987776554443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-15 Score=164.49 Aligned_cols=442 Identities=11% Similarity=0.041 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhh----ccCchHHHHHH-HHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDS----YLGRFLTIGLA-SFC 107 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~----~~Gr~~~~~~~-~~~ 107 (611)
+..+..+.+...+++-....+++.|+ +++|++....+++..+..+...+.+++.|+++|| + ||||.++++ ...
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~ 83 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHH
Confidence 44444455555666555556666765 5799999999999999999999999999999995 6 999998875 555
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCC-CCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCES-PTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLE 186 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (611)
..++.++++++.++.. .+.+.-.. ......+...++..+..++....++...++++|.+|+++ ++++
T Consensus 84 ~~~~l~ll~~~~~~~~-------~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~-----~~~~ 151 (477)
T TIGR01301 84 VAFAVILIGFAADIGH-------LFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDA-----RRTR 151 (477)
T ss_pred HHHHHHHHHhCchhhh-------hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchh-----HHHH
Confidence 5566666665442111 00000000 000111334455555667888888999999999999821 2335
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh--hcc-------------ccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchh
Q 007262 187 SFFGWYYATSAIAVVIALTAIVYI--QDH-------------LGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLL 251 (611)
Q Consensus 187 ~~~~~~~~~~~ig~~l~~~~~~~l--~~~-------------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (611)
.+.++.....++|..+++.++++. .+. .+.+..|++.+++.++..++..+..++.+..++++.+.
T Consensus 152 ~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~ 231 (477)
T TIGR01301 152 IANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN 231 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh
Confidence 788899999999999999888764 211 15678888888777766665554444322111000000
Q ss_pred HHHHHHHHHHHhhcccCCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHH
Q 007262 252 TGFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELK 331 (611)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (611)
. +. +..++ ... ...++...+..++.-|
T Consensus 232 ~---------------~~---------~~~~~-----~~~------------------------~~~~~~i~~~~~~mP~ 258 (477)
T TIGR01301 232 S---------------EA---------APPSK-----HGE------------------------EAFFGELFGAFKYLPR 258 (477)
T ss_pred h---------------hc---------ccccc-----cch------------------------hhhHHHHHHHHHHCCH
Confidence 0 00 00000 000 0000000000111112
Q ss_pred HHHHHHHHHHHhHhHHhhhcC-CchhhhhhhcccccC-CCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCC
Q 007262 332 ALIKVLPLWSTGIMMSINISQ-NSFPLLQASSMDRHV-TSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPV 409 (611)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~q-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~ 409 (611)
.+.+.+...++.-..|..+.. .+-++.+.-.-.... ...++.. --..........+...+.+.+..++.+|+++|
T Consensus 259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~g-vr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~-- 335 (477)
T TIGR01301 259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDG-VRAGAFGLMLNSVVLGITSIGMEKLCRGWGAG-- 335 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 333333333333333333333 222232221111100 0000000 00011111111122224444555566666432
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCc--cccch-HHHHHHHHHHHhhhHHHHhhhhHhhhhc
Q 007262 410 RLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQA--VLEMS-AMWLVPQHCLNGLAEAFNAIAQTEFFYS 486 (611)
Q Consensus 410 ~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~li~~~~l~g~g~~~~~~~~~~~~~~ 486 (611)
+..-.++.++.++++....+......+. +..+..+. ..+.. .+..+..+.+.|+.....+...++.+.+
T Consensus 336 ----k~~~~~s~~~~~~~l~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~ 407 (477)
T TIGR01301 336 ----KRLWGIVNIILAICLAATVLVTYVAKNS----RYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASI 407 (477)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhhhhcc----ccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence 1223667777777776665543110000 00000000 01111 3667778888999999999999999999
Q ss_pred cCCch--hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007262 487 EFPKS--MSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWA 564 (611)
Q Consensus 487 ~~P~~--~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 564 (611)
..|++ ..|..+|+.|.+-.+...+.+...+.+.+..+++ ....+.+.++.++++++..+++.|+
T Consensus 408 ~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~--------------~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 408 RSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGG--------------NLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCC--------------CeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 99954 4599999999999999999988777766655422 1345677788888888888888777
Q ss_pred cC
Q 007262 565 YG 566 (611)
Q Consensus 565 ~~ 566 (611)
.+
T Consensus 474 ~~ 475 (477)
T TIGR01301 474 PR 475 (477)
T ss_pred CC
Confidence 54
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-16 Score=165.20 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=120.9
Q ss_pred hhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhc----cCchHHH-HHHHHHHHHHHHHHHHhhhcCC
Q 007262 49 GLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSY----LGRFLTI-GLASFCSLLGMFLLWLTAMIPK 123 (611)
Q Consensus 49 ~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Gr~~~~-~~~~~~~~i~~~~~~~~~~~~~ 123 (611)
++.....+.+.++.|+|.++.++..+. .+...+ .++.|+++||+ +||||.+ +.+.++..++...+++.. .
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---~ 79 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---P 79 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC---c
Confidence 444555566677889999999999655 333334 88999999996 3898874 556666666655555432 0
Q ss_pred CCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHH
Q 007262 124 VKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIA 203 (611)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~ 203 (611)
..+.+.+....++.+++.+...++..+++.|++|+ ++|+.+.++...+.++|..++
T Consensus 80 -----------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------~~r~~~~~~~~~~~~~G~~~~ 135 (356)
T TIGR00901 80 -----------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSD-------EELGYGSTIYIVGYRAGMLLS 135 (356)
T ss_pred -----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhchHHHHHHHHHHHHHHHH
Confidence 12456666777788888899999999999999998 889999999999999999999
Q ss_pred HHHHHHhhcccc--------chhhhHHHHHHHHHHHHHHH
Q 007262 204 LTAIVYIQDHLG--------WKVGFGVPAILMVLSLLLFF 235 (611)
Q Consensus 204 ~~~~~~l~~~~g--------w~~~f~~~~~~~~~~~~~~~ 235 (611)
+.+++.+....+ ||..|++.++..++..+..+
T Consensus 136 ~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 136 GSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 999998887777 99999988876666554433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-14 Score=152.63 Aligned_cols=383 Identities=16% Similarity=0.130 Sum_probs=208.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhh
Q 007262 40 EAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTA 119 (611)
Q Consensus 40 ~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~ 119 (611)
.++..+++-....+++.|+++ .|+|..|.|.+.++..++..+.+++.|+++||...+||.+.+..++..+...+.....
T Consensus 11 ~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~ 89 (400)
T PF03825_consen 11 YFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS 89 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334444455788889886 6799999999999999999999999999999984577888777666666554444333
Q ss_pred hcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHH
Q 007262 120 MIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIA 199 (611)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 199 (611)
+++.+++..++..+......|...++..+...++... =.|-|.. .++|
T Consensus 90 -----------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~---YG~iRlw------GSiG 137 (400)
T PF03825_consen 90 -----------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKD---YGRIRLW------GSIG 137 (400)
T ss_pred -----------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCC---CCcchhh------hhHH
Confidence 4565666677778888888888888888877752111 1122222 3344
Q ss_pred HHHHHHH-HHHhhccc---cchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCCCCCCcc
Q 007262 200 VVIALTA-IVYIQDHL---GWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNAS 275 (611)
Q Consensus 200 ~~l~~~~-~~~l~~~~---gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (611)
-+++.+. .+.+.... +....+++.+...++.....+ ..|+.+.++..++..++ .
T Consensus 138 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l-~lp~~~~~~~~~~~~~~------------------~--- 195 (400)
T PF03825_consen 138 FIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFAL-FLPKTPPKRSAKESVKK------------------L--- 195 (400)
T ss_pred HHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHH-hCCCCccccccCCCccc------------------c---
Confidence 4444322 12222222 223345554443322222222 22222110000000000 0
Q ss_pred cccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhhhcCCch
Q 007262 276 WCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSF 355 (611)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~ 355 (611)
...+ .| +-.++++.+...+..++..+.....++..+.
T Consensus 196 ------------------~~~~--------------------~~-----~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~ 232 (400)
T PF03825_consen 196 ------------------LGLD--------------------AL-----KLLKNPRFLVFLLAAFLIGISHAAYYTFFSI 232 (400)
T ss_pred ------------------cchH--------------------HH-----HHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 0001111111111111112222221111222
Q ss_pred hhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007262 356 PLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVE 435 (611)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~ 435 (611)
++......... ..+.... ...+.|....-+.+|+.+| .+..+.+.++.+..++=..+.+...
T Consensus 233 yl~~~gg~~~~-------~~g~~~~--------l~~~aEi~~f~~~~~~~~r---~g~~~ll~~a~~~~~vR~~l~a~~~ 294 (400)
T PF03825_consen 233 YLQELGGYSGS-------TIGILWA--------LGVVAEIPFFFFSGRFLKR---FGIKWLLLLALVAYAVRWLLYAYFS 294 (400)
T ss_pred HHHHcccchhh-------HHHHHHH--------HHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111101000 0111112 2223333333333444443 4677788888888888877776652
Q ss_pred HHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHH-HHHHHHHHHHH
Q 007262 436 NIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLG-MAVANLLASAI 514 (611)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~-~~lg~~l~~~i 514 (611)
++....+....+..++.|+..++.......|+.+.+|++.|+++++++... ..+|+.+|..+
T Consensus 295 -----------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~i 357 (400)
T PF03825_consen 295 -----------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLI 357 (400)
T ss_pred -----------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHH
Confidence 000011122233345789999999999999999999999999999997765 77999999999
Q ss_pred HHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007262 515 VSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAY 565 (611)
Q Consensus 515 ~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 565 (611)
.|.+.+..+..+.-. +..+|.+.+++.++..+++++..|+.
T Consensus 358 gG~l~~~~g~~~~~~----------~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 358 GGWLYDAFGARGMFD----------WSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHhcchhhhh----------HHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999887664322111 24456667777777777777765553
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.7e-15 Score=154.27 Aligned_cols=155 Identities=12% Similarity=0.071 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHhCCChhh-hhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 007262 50 LVTNMILYLMKDYHLGVAK-GTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSP 128 (611)
Q Consensus 50 ~~~~~~~yl~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 128 (611)
..+++..|+.+++|++..| .|.+.+++..++.+..+++|+++||+ |-|+++.++.+.+.+..++.+++.
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~--------- 113 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT--------- 113 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH---------
Confidence 3356778999999999999 99999999999999999999999997 999999999999999999998876
Q ss_pred CCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007262 129 CNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIV 208 (611)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~ 208 (611)
++..+.+.|++.|++.|+.. +...++..++|+ ++|+++.++...+..+|.++++++++
T Consensus 114 --------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~-------kER~ratsi~~sg~~vG~~Ia~~L~q 171 (511)
T TIGR00806 114 --------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP-------SRYQRAAAYSRAAVLLGVFLSSVLGQ 171 (511)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999 999999999999 99999999999999999999999999
Q ss_pred HhhccccchhhhHH---HHHHHHHHHHHHHHh
Q 007262 209 YIQDHLGWKVGFGV---PAILMVLSLLLFFIA 237 (611)
Q Consensus 209 ~l~~~~gw~~~f~~---~~~~~~~~~~~~~~~ 237 (611)
++ ..+||++-+.+ ......+++++.++.
T Consensus 172 ll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 172 LL-VTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HH-HhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 84 46799975544 333444455444443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.4e-15 Score=160.16 Aligned_cols=378 Identities=11% Similarity=0.058 Sum_probs=216.5
Q ss_pred CcchHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccC-----chHHHH
Q 007262 29 GLITMP-FIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLG-----RFLTIG 102 (611)
Q Consensus 29 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----r~~~~~ 102 (611)
+++..+ .+....+.+.+. +.+...++.++++++|++.++.+...+...+...+-++ .|.++||+ + ||+.+.
T Consensus 23 ~~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~ 99 (468)
T TIGR00788 23 HPRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLV 99 (468)
T ss_pred CcchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHH
Confidence 344333 334467777887 77778888999999999999998888888888777666 99999997 7 777777
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcc
Q 007262 103 LASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNE 182 (611)
Q Consensus 103 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~ 182 (611)
++.++.. ......++. + ........+.+++.+++.+....+.-+++.|..++ .+
T Consensus 100 ~~~~l~~-~~~~~~l~~--~------------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~-~~---- 153 (468)
T TIGR00788 100 LSGLLGS-AILYGLLPG--K------------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRE-SP---- 153 (468)
T ss_pred HHHHHHH-HHHHHhccc--c------------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhc-CC----
Confidence 7765552 111222221 0 01233344478889999999999999999999983 21
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHH
Q 007262 183 RVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAY 262 (611)
Q Consensus 183 ~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (611)
+.++...++.+...++|..+++.++|++.+.++|+..|++.+.+.++..+...+.+++.....++.++....
T Consensus 154 ~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~-------- 225 (468)
T TIGR00788 154 SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEM-------- 225 (468)
T ss_pred CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchh--------
Confidence 344556667777788999999999999999999999998887776655333333222100001110000000
Q ss_pred hhcccCCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHH------HHHHHH
Q 007262 263 KNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEEL------KALIKV 336 (611)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 336 (611)
+... ... ...+.. .+..++. +.++..
T Consensus 226 ---------------~~~~-----~~~----~~~~~~------------------------~~~~~~l~~~l~~~~i~~~ 257 (468)
T TIGR00788 226 ---------------NMAL-----LTL----GVLANV------------------------KVQILGLRGAIQLLEIAKP 257 (468)
T ss_pred ---------------hhhh-----hhh----hHHHHH------------------------HHHHHHHHHHHhcHHHHHH
Confidence 0000 000 000000 0000011 112121
Q ss_pred HHHHHHhHhHHhhhcC--CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChh
Q 007262 337 LPLWSTGIMMSINISQ--NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVK 414 (611)
Q Consensus 337 ~~l~~~~~~~~~~~~q--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~ 414 (611)
+.+.+.. +..... .+.+.++... ...+ ....+.+.....+..++...+.++ +.+| .+.+
T Consensus 258 l~fifl~---~~~~~~~~~~~f~~~~~~--lG~s---~~~~G~~~~~~~v~~i~g~~~~~~----~~~~-------~~~r 318 (468)
T TIGR00788 258 LIFIFLS---YANLPGASGSVFCATTQC--LPGG---PSFSGMSKVVGNLGSLCGVGGYDR----FLKT-------FPYR 318 (468)
T ss_pred HHHHHHH---HhhcCCCCceeEEEEccc--CCCC---cchhhhHHHHHHHHHHHHHHHHHH----HHhh-------CCHH
Confidence 1111110 111111 2221111111 1110 011233333344444444444333 2222 3566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhH
Q 007262 415 LRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSS 494 (611)
Q Consensus 415 ~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg 494 (611)
+.+.++.++.+++........ .+... ..+ ..+.+......++.+++.++.+.+...++.+.+|++.+|
T Consensus 319 ~~l~~~~~l~~~~~~~~~~l~-~~~~~--~~g---------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~eg 386 (468)
T TIGR00788 319 LLFGVTTLLYTLSSLFDLILV-KRWNL--AFG---------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCES 386 (468)
T ss_pred HHHHHHHHHHHHHHhCceeee-ecccc--ccC---------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCcee
Confidence 667777777666553322110 00000 000 012233444557778888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 007262 495 IAASLFGLGMAVANLLASAIVSAVDDIT 522 (611)
Q Consensus 495 ~~~g~~~~~~~lg~~l~~~i~~~i~~~~ 522 (611)
+..|+.+..+++|..+++.+++.+.+..
T Consensus 387 t~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 387 SVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998888876654
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-15 Score=163.66 Aligned_cols=140 Identities=12% Similarity=0.022 Sum_probs=126.3
Q ss_pred HHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCC
Q 007262 60 KDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESP 139 (611)
Q Consensus 60 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (611)
+..+.+........+++.++..+|+++.|.++||+ |||+++++++++.+++.++.+++.
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~-------------------- 169 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP-------------------- 169 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence 45677888889999999999999999999999995 999999999999999999999877
Q ss_pred CchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhh
Q 007262 140 TTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVG 219 (611)
Q Consensus 140 ~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~ 219 (611)
+++.+++.|++.|++.++.......+++|.+++ +.|+.+.++ ......++.+++.+++++.. +||+.
T Consensus 170 ---~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~-------~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~ 236 (521)
T KOG0255|consen 170 ---NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSP-------KQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL 236 (521)
T ss_pred ---cHHHHHHHHHHHHhhccchhHHhHhhheeecCc-------chhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence 788899999999999999999999999999999 999999999 77777888888888888887 89999
Q ss_pred hHHHHHHHHHHHHH
Q 007262 220 FGVPAILMVLSLLL 233 (611)
Q Consensus 220 f~~~~~~~~~~~~~ 233 (611)
+++..+..++.+++
T Consensus 237 ~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 237 FWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988776666555
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=163.07 Aligned_cols=408 Identities=14% Similarity=0.042 Sum_probs=216.5
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchh
Q 007262 64 LGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQ 143 (611)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (611)
+++.-.+.+..+..++.++++++.||++|++ |||+++...+++++++++.++++.+ .+ ....-
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~----~~------------~~~~~ 143 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVG----TT------------SPLGV 143 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCC----CC------------CCcch
Confidence 4556678888889999999999999999997 9999999999999999986664431 11 11235
Q ss_pred hHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH----HHHHHHHHHHHHHHHHHhhcc------
Q 007262 144 MTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY----YATSAIAVVIALTAIVYIQDH------ 213 (611)
Q Consensus 144 ~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~ig~~l~~~~~~~l~~~------ 213 (611)
+..+...|+++|+|.|+-+|.+.+..+|..-. +.|+...+.. .++.-.|++++-++.......
T Consensus 144 m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~-------~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~ 216 (538)
T KOG0252|consen 144 MMTLCFFRFLLGIGIGGDYPLSATIMSESANK-------KTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPST 216 (538)
T ss_pred hhHHHHHHHHhhccccCCCcchHHHhhhhhhh-------ccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCC
Confidence 77888999999999999999999999998887 6677666543 444444555555444433221
Q ss_pred -----ccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHH-HHHHHHHHhhcccCCCCCCcccccccccCCccc
Q 007262 214 -----LGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGF-AQVAVVAYKNRKLALPPPNASWCYHRQKDSLLI 287 (611)
Q Consensus 214 -----~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (611)
.-||..|.+.++..++.+ ..+.+ .+ +.+ ..+.+ .+-...+.++.+...+ . -.+.++..
T Consensus 217 ~~~ld~vWRl~~glg~vpa~~~l---y~Rl~-M~--Et~--~Y~al~~~~~~~a~~d~~k~~~-~----~~~~~~~~--- 280 (538)
T KOG0252|consen 217 YPHLDGVWRIIFGLGAVPALLVL---YFRLK-MP--ETA--RYTALVSKKLKQAAGDMKKVLS-V----DIEAESTA--- 280 (538)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH---Hhhhc-CC--cch--hHHHHhhcCHhhhhhccccccc-c----ccchhhcc---
Confidence 239988877665543332 22111 11 110 00000 0000011111000000 0 00000000
Q ss_pred ccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhhhcC--Cchhhhhhhcccc
Q 007262 288 VPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQ--NSFPLLQASSMDR 365 (611)
Q Consensus 288 ~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q--~~~~~~~~~~~~~ 365 (611)
+ .+...+..|..+ ..+....+ ....++.....|..+.- .+..++|...++.
T Consensus 281 ----------------~------~~~~~~~~~~~~---F~~~f~~~--hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ 333 (538)
T KOG0252|consen 281 ----------------E------SDVPPPSNSFGL---FSRLFLRW--HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA 333 (538)
T ss_pred ----------------c------cCCCCcccccch---HHHHHHHH--HHHHHHHHHHHHHhhhhhhhccccHHHHHHHh
Confidence 0 000001112110 11111111 11222233333443333 2222444433331
Q ss_pred cCCCccccccc-cccch--hHHHHHHHHHHH----hHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007262 366 HVTSSFQIPAG-SFGTF--TIITLAAWVVLY----DRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIR 438 (611)
Q Consensus 366 ~~~~~~~~~~~-~~~~~--~~~~~~l~~~l~----~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~ 438 (611)
-. + .+.. ..... ....-.+.+.+. -++..-+.+++ ++....+.|++++++-+++++..-
T Consensus 334 ig---~-~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-------GRk~iq~~GF~~~~i~~~~~~~~y--- 399 (538)
T KOG0252|consen 334 IG---V-IPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-------GRKYIQLMGFFIMTIFFFVIAGPY--- 399 (538)
T ss_pred hc---c-CCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-------hhHHHHHhhHHHHHHHHHHHcCCc---
Confidence 11 0 1111 01010 111111111111 11111233443 344557888888888887776542
Q ss_pred HHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 439 RRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAV 518 (611)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i 518 (611)
.+ ..+..... +..-+...+++-.-..+...+..+.+|.+.||+.-|+...+.-+|..++.......
T Consensus 400 -----~~-------~~~~~Gf~--v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~ 465 (538)
T KOG0252|consen 400 -----NQ-------LENTIGFV--VLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYL 465 (538)
T ss_pred -----cc-------ccccCcee--ehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHh
Confidence 10 01111111 11112222333333455566667789999999999999999999999998876654
Q ss_pred hhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCC
Q 007262 519 DDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDE 578 (611)
Q Consensus 519 ~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (611)
.+. + .|..+ .+.+.+++++++++++.++.+++ +|+|++++||++...+
T Consensus 466 t~~-------~-yp~~~---g~~~v~~i~~~~~~~gi~~T~l~-pEtk~~~leei~~e~~ 513 (538)
T KOG0252|consen 466 TDH-------N-YPPNI---GVRNVFIILAGCMLLGILFTLLI-PETKGKSLEEISNEEE 513 (538)
T ss_pred hhc-------c-CCccc---cchHHHHHHHHHHHHhHheeEEe-ecccccCHHHhcChhh
Confidence 331 1 22222 24578999999888888776555 5999999998854433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-14 Score=155.77 Aligned_cols=149 Identities=9% Similarity=0.059 Sum_probs=100.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhc---cCchHHH-HHHHHHHHHHHHH
Q 007262 39 NEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSY---LGRFLTI-GLASFCSLLGMFL 114 (611)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~~~-~~~~~~~~i~~~~ 114 (611)
..+..++.+..+..+++.|+++.+|++..++|.+.++..+...+..++.|+++||. +||||.. .++.+...+..++
T Consensus 16 g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~ 95 (448)
T PRK09848 16 GDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL 95 (448)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence 55556666666778888999999999999999999999999999999999999995 3666644 5555544444433
Q ss_pred HHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHH
Q 007262 115 LWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYA 194 (611)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 194 (611)
+.. .|.. ..........++..++.+++.+...++..++..+..+++ ++|.+..++..+
T Consensus 96 ~~~---~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~~r~~~~~~r~~ 153 (448)
T PRK09848 96 VFW---VPTD-------------WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQP------QSRARLGAARGI 153 (448)
T ss_pred HHh---CcCC-------------CCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCH------HHHHHHHHHHHH
Confidence 321 1100 000112333445556778888888888888888877762 566766655544
Q ss_pred H-----HHHHHHHHHHHHHH
Q 007262 195 T-----SAIAVVIALTAIVY 209 (611)
Q Consensus 195 ~-----~~ig~~l~~~~~~~ 209 (611)
+ .+++..++|.+.+.
T Consensus 154 ~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 154 AASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 3 33555666665553
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-14 Score=155.79 Aligned_cols=146 Identities=11% Similarity=0.062 Sum_probs=108.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhh----hccCc-hHHHHHHHHHHHHHHH
Q 007262 39 NEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSD----SYLGR-FLTIGLASFCSLLGMF 113 (611)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Gr-~~~~~~~~~~~~i~~~ 113 (611)
..+...+.+..+.++++.|+++.+|++...+|.+.++.-+..++..|+.|+++| |+ || |+-++++.+...++.+
T Consensus 14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~~ 92 (473)
T PRK10429 14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVLF 92 (473)
T ss_pred chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHHH
Confidence 445556666677788999999999999999999999999999999999999999 65 88 5566667777777665
Q ss_pred HHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHH
Q 007262 114 LLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYY 193 (611)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (611)
++...+.++ ....+..+++..++.+++.........++..|..+++ ++|.+..++..
T Consensus 93 llf~~p~~~-----------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~------~eR~~l~~~~~ 149 (473)
T PRK10429 93 LLFSAHLFE-----------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDK------REREQLVPYPR 149 (473)
T ss_pred HHHcCCCCC-----------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCH------HHHHHHHHHHH
Confidence 554322111 1123444555566778888888899999999998652 88888888877
Q ss_pred HHHHHHHHHHHHHHH
Q 007262 194 ATSAIAVVIALTAIV 208 (611)
Q Consensus 194 ~~~~ig~~l~~~~~~ 208 (611)
...++|+.+.+.+..
T Consensus 150 ~~~~ig~~~~~~~~~ 164 (473)
T PRK10429 150 FFASLAGFVTAGFTL 164 (473)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666554443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-15 Score=170.68 Aligned_cols=202 Identities=16% Similarity=0.257 Sum_probs=150.2
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
.+++.+.+......+......++.......++++++++..+.|++.+.+.++..++.++.|+++||+ |||+.+.++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll 107 (633)
T TIGR00805 29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI 107 (633)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence 3444443433334444455567777777888999999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhcCC-C---------------CCCCCCcccc-----------CCCCCC--chhhHHHHHHHHHHHHhc
Q 007262 108 SLLGMFLLWLTAMIPK-V---------------KPSPCNILTQ-----------SCESPT--TAQMTLLISSFCFISIGA 158 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~-~---------------~~~~~~~~~~-----------~~~~~~--~~~~~~l~~~~~~~glg~ 158 (611)
+.++.++.+++..+.. + .+..|.. +. .|.... ...+..++++|+++|+|.
T Consensus 108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~ 186 (633)
T TIGR00805 108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCME-NLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA 186 (633)
T ss_pred HHHHHHHHhChHHhcCCccccccccccccccccccccccC-CCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence 9999999886542110 0 0112210 00 001000 113567889999999999
Q ss_pred cccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc----------------------cc
Q 007262 159 GGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHL----------------------GW 216 (611)
Q Consensus 159 g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~----------------------gw 216 (611)
+...+...+++.|.+|+ ++|+..+++++.+..+|..+++++++++.+.+ +|
T Consensus 187 ~~~~~~~~~~i~d~~~~-------~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaW 259 (633)
T TIGR00805 187 TPIFPLGISYIDDFAKS-------KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAW 259 (633)
T ss_pred CcchhcCchhhhccCCc-------cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHH
Confidence 99999999999999999 88999999999999999999999999887532 26
Q ss_pred hhhhHHHHHHHHHHHHHHHHhC
Q 007262 217 KVGFGVPAILMVLSLLLFFIAS 238 (611)
Q Consensus 217 ~~~f~~~~~~~~~~~~~~~~~~ 238 (611)
+..|++.+++.++..+.++..+
T Consensus 260 wl~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 260 WIGFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 7778777766655544444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=154.90 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=133.9
Q ss_pred HhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCC
Q 007262 61 DYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPT 140 (611)
Q Consensus 61 ~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (611)
+++-+.++.|+++....+...+..++.|.+.||+ |+|-.+++|++++..+++++++..
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~--------------------- 157 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN--------------------- 157 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence 4566778999999999999999999999999997 999999999999999999999876
Q ss_pred chhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhh
Q 007262 141 TAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGF 220 (611)
Q Consensus 141 ~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f 220 (611)
+++.++++|.++|+|.+....+..++++|.||+. .+|++++++.-....+|-.+||.++|.+.+..|++.+|
T Consensus 158 --sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d------~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPF 229 (464)
T KOG3764|consen 158 --SYPMLFVARSLQGVGSAFADTSGLAMLADVFPED------NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPF 229 (464)
T ss_pred --hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccc------hhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcH
Confidence 6778999999999999999999999999999982 67899999998899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007262 221 GVPAILMVLSLLLFFIA 237 (611)
Q Consensus 221 ~~~~~~~~~~~~~~~~~ 237 (611)
++.+++.++-..+.++.
T Consensus 230 lVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 230 LVLAIVLLLDGALQLLV 246 (464)
T ss_pred HHHHHHHHHHHHHHHhe
Confidence 99998887766554443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-14 Score=155.07 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=118.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhc---cCch-HHHHHHHHHHHHHHHH
Q 007262 39 NEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSY---LGRF-LTIGLASFCSLLGMFL 114 (611)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~-~~~~~~~~~~~i~~~~ 114 (611)
..+..+.....+..+++.|+++.+|++..++|.+.++..+...+..|+.|+++||. +||| +.++.+.+...++.++
T Consensus 17 g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l 96 (444)
T PRK09669 17 GDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLL 96 (444)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHH
Confidence 33445555566678899999999999999999999999999999999999999993 2774 5555666666666655
Q ss_pred HHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHH
Q 007262 115 LWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYA 194 (611)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 194 (611)
+...+..+ .......+++..++.+++.........++.+|..+++ ++|.+..++...
T Consensus 97 ~f~~p~~~-----------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~------~eR~~l~~~r~~ 153 (444)
T PRK09669 97 TFYTPDFG-----------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDP------RERHSLQSWRFA 153 (444)
T ss_pred HHhCCCCC-----------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH------HHHHHHHHHHHH
Confidence 54322111 1123455566666667777777777889999988662 778888888877
Q ss_pred HHHHHHHHHHHHHHHhhc-------cccchhhhHHHHHHHHHHH
Q 007262 195 TSAIAVVIALTAIVYIQD-------HLGWKVGFGVPAILMVLSL 231 (611)
Q Consensus 195 ~~~ig~~l~~~~~~~l~~-------~~gw~~~f~~~~~~~~~~~ 231 (611)
..++|..+++.+...+.. ..+|+..+.+.+++.++..
T Consensus 154 ~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~ 197 (444)
T PRK09669 154 LSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF 197 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 778887777654433222 2467766666555544443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-15 Score=148.90 Aligned_cols=116 Identities=14% Similarity=0.055 Sum_probs=104.2
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhh
Q 007262 65 GVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQM 144 (611)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (611)
+..-+|.+-+.|.+..++.++..|.++||+ |||+++++|++..++...+.+++. ++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~-----------------------~F 121 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR-----------------------NF 121 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH-----------------------HH
Confidence 445678999999999999999999999998 999999999999888777777766 67
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007262 145 TLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQD 212 (611)
Q Consensus 145 ~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~ 212 (611)
..++++|++.|+..|-. ..+.++++|.+++ +.|+.+++....+..+|.++||.++|++..
T Consensus 122 ~afv~aR~l~Gi~kgnl-~v~rAiisdV~se-------k~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 122 AAFVLARFLGGIFKGNL-SVIRAIISDVVSE-------KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHhhhhccCch-HHHHHHHHhhcCh-------hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 67777899999998775 6778999999999 889999999999999999999999999987
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-13 Score=146.92 Aligned_cols=176 Identities=13% Similarity=-0.006 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHH--HHHHHHHHHHHHHHH-HHHhhhccCchHHHHHHHHHH-H
Q 007262 34 PFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNV--LFFWTAATNFMPILG-AFLSDSYLGRFLTIGLASFCS-L 109 (611)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~-G~laD~~~Gr~~~~~~~~~~~-~ 109 (611)
..+....+.+.+.+......+|.|+++ .|++.++.|.+ .........+..++. ++.+||+ ||||..++.+.+. .
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~~ 81 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLVS 81 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHHH
Confidence 344456666777766666778888764 69999999997 355566666666666 6689996 9999876665332 2
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
++...+.... +. ......+.....+.++..+...+...++..|..++ ++++...
T Consensus 82 ~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~-------~~~~~~~ 135 (390)
T TIGR02718 82 ACLASLALVG--PD-----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNG-------RTLAKGN 135 (390)
T ss_pred HHHHHHHcCC--cc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhhHHH
Confidence 2222222111 10 01122333444455566666667777777777666 7777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHh
Q 007262 190 GWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIA 237 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (611)
+....+..+|..+++.+.+++.+.+|||..|++.+.+.++..+..+..
T Consensus 136 ~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 136 AVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 777777789999999888999999999999999887766555544333
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-14 Score=154.22 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=121.4
Q ss_pred HHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCC
Q 007262 58 LMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCE 137 (611)
Q Consensus 58 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (611)
+++++++...+.+.+.++|+++++++.+++|.|.||+ .-.+.+....+++.+-.++.....
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~------------------ 132 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH------------------ 132 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 4478889999999999999999999999999999997 855555555555444333333233
Q ss_pred CCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhh------
Q 007262 138 SPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQ------ 211 (611)
Q Consensus 138 ~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~------ 211 (611)
+++.+++.|++.|+..+..+|+...+++.++.+ ++|+..+++++....+|.++|.++...+.
T Consensus 133 -----s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~-------~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~ 200 (495)
T KOG2533|consen 133 -----SFPGLIALRFLLGLFESGGWPGVVAILGNWYGK-------SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG 200 (495)
T ss_pred -----hhHHHHHHHHHHHHHhcccchHHHHHHHhhcCh-------hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC
Confidence 678899999999999999999999999999999 99999999999999999999998877653
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHH
Q 007262 212 DHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 212 ~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
...||||.|++.+++.+...++.++
T Consensus 201 ~~~gW~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 201 GLAGWRWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred CcCCceeehhHHHHHHHHHHheEEE
Confidence 3468999999998877665554433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-20 Score=205.69 Aligned_cols=396 Identities=13% Similarity=0.083 Sum_probs=222.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHH
Q 007262 68 KGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLL 147 (611)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (611)
+.+++.+...++..++++++|+++||+ |||+++.++.++..++.++..+++.. .+.+.+
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~--------------------~~~~~~ 105 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY--------------------NNFWML 105 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc--------------------cccccc
Confidence 467889999999999999999999997 99999999999999999888875410 156779
Q ss_pred HHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc---cccchhhhHHHH
Q 007262 148 ISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQD---HLGWKVGFGVPA 224 (611)
Q Consensus 148 ~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~---~~gw~~~f~~~~ 224 (611)
.++|+++|++.|+..+..+.++.|..|+ +.|+...++.+....+|..++..+.-.+.+ ..+||..+.++.
T Consensus 106 ~~~R~~~G~~~g~~~~~~~~~~~E~~~~-------~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~ 178 (451)
T PF00083_consen 106 LIGRFLIGFGIGGAYVVSPIYISEIAPP-------KHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGA 178 (451)
T ss_pred cccccccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999 889998888888888888887766443333 245999988877
Q ss_pred HHHHHHHHHHHHh--CccccccCCCCchhHHHHHHHHHHHhhcccCCCCCCcccccccccCCcccccCchhhhhhhhhhc
Q 007262 225 ILMVLSLLLFFIA--SPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLI 302 (611)
Q Consensus 225 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 302 (611)
+..++.++..... .|++...+.+.++..+..+. .++. +..+.+ ..+..+ ..+.
T Consensus 179 ~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~----~~~~--~~~~~~---~~~~~~---~~~~------------- 233 (451)
T PF00083_consen 179 IPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRK----LRGK--EIEDEE---IEEIKA---EKKE------------- 233 (451)
T ss_pred cccccccccccccccccceeccccccccccccccc----cccc--cccccc---cccccc---cccc-------------
Confidence 6654443333222 23333222222221111000 0000 000000 000000 0000
Q ss_pred cCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhhhcCCchhhhhhhcccccCCCcccccccc-ccch
Q 007262 303 RNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASSMDRHVTSSFQIPAGS-FGTF 381 (611)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 381 (611)
....+..|+...+.. +.+++++..+.+........ + .....+...... ..+ ..... ....
T Consensus 234 ---------~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~g--~--~~~~~~~~~i~~-~~~----~~~~~~~~~~ 294 (451)
T PF00083_consen 234 ---------SQESKASWRDLFRNK-KYRKRLLIALLLQFFQQFSG--I--NFIFYYSPSIFE-NAG----ISNSFLATLI 294 (451)
T ss_pred ---------ccccceeeeeccccc-cccccccccccccccccccc--c--cccccccccccc-ccc----cccccccccc
Confidence 000001122111110 01222222222111110000 0 000001111111 110 11111 1111
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCccCCCCccccchHH
Q 007262 382 TIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSG-LVENIRRRRAIREGYLNNGQAVLEMSAM 460 (611)
Q Consensus 382 ~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (611)
..+...+...+ ...+.+|++||+ .+..+.++++++.+.++ .... ..+ .+...+..
T Consensus 295 ~~~~~~~~~~~----~~~~~~~~GRr~-------~~i~~~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~~ 350 (451)
T PF00083_consen 295 LGLVNFLGTLL----AIFLIDRFGRRK-------LLIIGLLLMAICSLILGIIFFL------GVS-------SSSWWSIL 350 (451)
T ss_pred ccccccccccc----cccccccccccc-------cccccccccccccccccccccc------ccc-------cccccccc
Confidence 11111111111 123456665553 25566666666665554 1100 000 00011222
Q ss_pred HHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchh
Q 007262 461 WLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRY 540 (611)
Q Consensus 461 ~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~ 540 (611)
.++...+..........+..+.+..|.+|.+.|+++.|+....+++++++++.+.+.+.+..+ .
T Consensus 351 ~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~----------------~ 414 (451)
T PF00083_consen 351 SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG----------------G 414 (451)
T ss_pred cceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------c
Confidence 222222233334445667788888999999999999999999999999998887766543221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccccc
Q 007262 541 DNYYWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSV 575 (611)
Q Consensus 541 ~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 575 (611)
...|+++++++++..++.+++.+|+|++++||+++
T Consensus 415 ~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~ 449 (451)
T PF00083_consen 415 WGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQE 449 (451)
T ss_pred cccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence 25677888888999988999999999999988764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-13 Score=141.12 Aligned_cols=137 Identities=12% Similarity=0.115 Sum_probs=120.3
Q ss_pred hhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007262 48 YGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPS 127 (611)
Q Consensus 48 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 127 (611)
..+...+.+.+++.++++..|++.+..+++.++.++.++.|++.+|+ |+|+.+++|+.++++|..+.+=++
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa-------- 99 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAA-------- 99 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhh--------
Confidence 44556678899999999999999999999999999999999999997 999999999999999988876333
Q ss_pred CCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 007262 128 PCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAI 207 (611)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~ 207 (611)
...++..++++.++.+.|.+..+.+.+++++...++ +.-..-++..+....+|..++|+++
T Consensus 100 ------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~-------~~a~~rlnl~q~fn~lGa~~gp~~g 160 (422)
T COG0738 100 ------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKP-------ESAAFRLNLAQAFNGLGAILGPLLG 160 (422)
T ss_pred ------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc-------hhHHHHHHHHHHhhhhHHHHHHHHH
Confidence 234788899999999999999999999999999999 4444457888888899999999999
Q ss_pred HHhhc
Q 007262 208 VYIQD 212 (611)
Q Consensus 208 ~~l~~ 212 (611)
+++..
T Consensus 161 ~~lil 165 (422)
T COG0738 161 SSLIL 165 (422)
T ss_pred HHHHH
Confidence 88876
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-13 Score=148.25 Aligned_cols=175 Identities=10% Similarity=0.040 Sum_probs=127.9
Q ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007262 27 KGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASF 106 (611)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 106 (611)
.++|..+...+++..+... .|+.. .....+++++|++..+.+++.++.. ...++.+++|+++||+ |||+++.++.+
T Consensus 24 ~~Rw~~lva~~~~~~~~g~-~y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~l 99 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSF-MYAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMT 99 (591)
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 3555545444444444333 24443 3445689999999999999887744 3445677899999997 99999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhh
Q 007262 107 CSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLE 186 (611)
Q Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (611)
++.++.++++++.. ..+ ..+++.+++.|++.|+|.+...+.....+.++|| ++|+
T Consensus 100 l~~iG~ll~ala~~-~~i----------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp--------~~RG 154 (591)
T PTZ00207 100 VFCLGTLLFALTFQ-EVI----------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP--------SNRG 154 (591)
T ss_pred HHHHHHHHHHHHhc-ccc----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh--------hhhH
Confidence 99999999988631 000 1268889999999999999999999999999996 4679
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHhhccccchhhhHHHHHHHHHHHH
Q 007262 187 SFFGWYYATSAIAVVI-ALTAIVYIQDHLGWKVGFGVPAILMVLSLL 232 (611)
Q Consensus 187 ~~~~~~~~~~~ig~~l-~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 232 (611)
.+.++.....++|+.+ +++..+++.+ +|+..|++.+++.++..+
T Consensus 155 ~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~l 199 (591)
T PTZ00207 155 AVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGI 199 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHH
Confidence 9999999999999975 5555555543 577767666655444333
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-14 Score=155.58 Aligned_cols=417 Identities=13% Similarity=0.120 Sum_probs=248.6
Q ss_pred HHHHHHHHHHHhhhhHH---HHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 36 IIANEAFEKVASYGLVT---NMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 36 ~~~~~~~~~~~~~~~~~---~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
+++..++..+..+++.. .+-..++++++.+..+.+|+.++......+..++.+.+.||+ |.|.+.+.|.++..+|.
T Consensus 47 V~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g~ 125 (509)
T KOG2504|consen 47 VVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALGL 125 (509)
T ss_pred eeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHHH
Confidence 34455555555555543 233456788999999999999999999999999999999997 99999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHH-HHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSF-CFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
++..++. +.+.+++.. ++.|+|.|+.+..+...+..+|+ ++|+.+.++
T Consensus 126 ~lssF~~-----------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~--------kkR~lA~Gi 174 (509)
T KOG2504|consen 126 LLSSFAT-----------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE--------KKRALATGI 174 (509)
T ss_pred HHHHHHh-----------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhH--------HHHHHHHhh
Confidence 9999877 666676664 56889999999999999998877 568888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCCCC
Q 007262 192 YYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPP 271 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (611)
-..+..+|.++-|.+..++.+.+|||..+++...+.+-.+......+|.....++. ..++ .++.....+.
T Consensus 175 a~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~--------~~~~~~~~~~ 244 (509)
T KOG2504|consen 175 AVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKD--------LRNSAASVES 244 (509)
T ss_pred hhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhh--------hccccccccc
Confidence 88888899999999999999999999999887776655555555544432222211 0000 0000000000
Q ss_pred CCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCC---------cchhhHHHHHHHHHHHHHHHHH
Q 007262 272 PNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWS---------LCTIEQVEELKALIKVLPLWST 342 (611)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~ 342 (611)
.. .-.+.....+.....+ ....+....... ..-|+ .++.+..++++.+...+.
T Consensus 245 ~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~---- 306 (509)
T KOG2504|consen 245 TP--KPVELRISERDSGLKK-LSLSNLATLKRG-----------PDKWRNSPLQAFLSMLDLSLLKDPKFLLLALS---- 306 (509)
T ss_pred cc--cccccccccCCCCCCc-ccccchhhhhhC-----------CccccccchhhhhhhhhHHHHcCchHHHHHHH----
Confidence 00 0000000000000000 000000000000 00010 000111122111111111
Q ss_pred hHhHHhhhcCCchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHH
Q 007262 343 GIMMSINISQNSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLF 422 (611)
Q Consensus 343 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~ 422 (611)
.......+..+.+ +...... ..+ .-+...+....+..+.-++.-++...+. ++.. ++......++++
T Consensus 307 ~~~~~~g~~~p~~--~l~~~~~-~~g-~~~~~aa~l~Siigi~~i~gRi~~G~la----D~~~-----~~~~~~~~~~ll 373 (509)
T KOG2504|consen 307 NLFAYLGFNVPFV--YLPSYAK-SLG-LSSNDAAFLLSIIGVSDIIGRIILGLLA----DKPG-----IRALVLFLLTLL 373 (509)
T ss_pred HHHHHHHHHHHHH--HHHHHHh-hcC-CChhhhHHHHHHHHHhhhhhhhhhhhhc----Cccc-----cchHHHHHHHHH
Confidence 1111111111111 1111111 110 0001122333333333334434333322 2211 234555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHH
Q 007262 423 LSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGL 502 (611)
Q Consensus 423 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~ 502 (611)
.++++.++..... +.+.++...++.|+..+...........+..+.+.-..+.|+..+
T Consensus 374 ~~gl~~~~~p~~~----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~ 431 (509)
T KOG2504|consen 374 IAGLARLFLPFAT----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLL 431 (509)
T ss_pred HHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHH
Confidence 6666665554442 567777788888998888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Q 007262 503 GMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCS 562 (611)
Q Consensus 503 ~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 562 (611)
++.++..+|+.+.+.+.+.++ +|+..|+..++..+++....++..
T Consensus 432 ~~gi~~l~gpPiag~~~d~tg---------------~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 432 FQGIGALVGPPIAGLLYDITG---------------NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HhHHHHHcCcccceeeeeccC---------------CeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999999887776653 356778887877777776655554
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.1e-14 Score=146.13 Aligned_cols=388 Identities=12% Similarity=0.055 Sum_probs=211.5
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH-H-HH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASF-C-SL 109 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~-~-~~ 109 (611)
..+......++.-+++-...++.+.|++++.|++.++.|.+.++..+...+.+++.|.++||+ |.||-++.... + ..
T Consensus 8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~l 86 (412)
T PF01306_consen 8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLLL 86 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHHH
Confidence 344445555555555555668899999999999999999999999999999999999999997 85554433322 2 12
Q ss_pred HHHHHH-HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhcc----ccchhhhhhhhcccCCCCCCCcchh
Q 007262 110 LGMFLL-WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAG----GIRPCSIAFGADQLDRKDNPNNERV 184 (611)
Q Consensus 110 i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g----~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (611)
.+-+.. .+.+.+.. | ++++-++.++..+ ...|..-+++.+....
T Consensus 87 ~~pff~~v~~pll~~-------------------n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~--------- 135 (412)
T PF01306_consen 87 FGPFFIYVFGPLLQS-------------------N---FWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR--------- 135 (412)
T ss_dssp CHHHHHHTHHHHHHT-------------------T----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHH-------------------H---HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH---------
Confidence 222222 12210000 1 2233333333333 3334444444333221
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhh
Q 007262 185 LESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKN 264 (611)
Q Consensus 185 r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (611)
.+-=+|-...-.++|.+++..++|++.+. +.+..|++.....++..++.+..++...++....+.
T Consensus 136 ~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~-------------- 200 (412)
T PF01306_consen 136 NGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA-------------- 200 (412)
T ss_dssp HSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT--------------
T ss_pred hcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc--------------
Confidence 12224445556778999999999988863 556778876655444333333332211110000000
Q ss_pred cccCCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhH
Q 007262 265 RKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGI 344 (611)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (611)
. +.++++.+.....+.-..+.++..+.+.....
T Consensus 201 ----------------~-------------------------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~ 233 (412)
T PF01306_consen 201 ----------------L-------------------------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVA 233 (412)
T ss_dssp ----------------S-------------------------------SS------HHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred ----------------c-------------------------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHHHH
Confidence 0 00000000000000011133333333333333
Q ss_pred hHHhhhc-C-CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHH
Q 007262 345 MMSINIS-Q-NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLF 422 (611)
Q Consensus 345 ~~~~~~~-q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~ 422 (611)
..+..+. | ++++..+....+ .+ - ...+.++++..+.-.+...+ ..++.+|. +++.-+.++.+
T Consensus 234 ~~Y~vfdqqf~~y~~~~f~~~~--~g--~-~~~G~l~s~~v~~E~~~m~~----~p~li~ri-------g~k~~Lllag~ 297 (412)
T PF01306_consen 234 AIYDVFDQQFPIYFASFFQSAG--QG--N-QMYGYLWSVQVFLEALMMFF----SPWLINRI-------GAKNLLLLAGV 297 (412)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHH--HH--H-HHHHHHHHHHHHHHHHHHHH----HHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccc--cC--h-hHHhHHHHHHHHHHHHHHHH----HHHHHHhc-------ChHhHHHHHHH
Confidence 3333333 3 433221111110 00 0 01233333333332222222 23344553 56666888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHH-HH
Q 007262 423 LSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASL-FG 501 (611)
Q Consensus 423 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~ 501 (611)
++++=....+..+ +++++++.=.+.++-..+......-|+.+.+|++..++...+ ++
T Consensus 298 i~~iRi~~~~~~~----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~ 355 (412)
T PF01306_consen 298 IMAIRIIGSGFAT----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQ 355 (412)
T ss_dssp HHHHHHHHHHT------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHT
T ss_pred HHHHHHHHHhhhc----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence 8888877777664 677777777888998889999999999999999999999888 57
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 007262 502 LGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYGP 567 (611)
Q Consensus 502 ~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 567 (611)
+...+|..+.+.+.|.+.|..+ ++..|++.+.+.++..++..+..++.++
T Consensus 356 ~~~~~~~~i~s~~~G~lyd~~G----------------~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 356 FAKQIGIIILSPLAGYLYDRIG----------------FQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHhhhHHhhHhhcC----------------cHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 7888999999999888877553 4567888888888777777777665443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.9e-14 Score=150.62 Aligned_cols=356 Identities=14% Similarity=0.083 Sum_probs=217.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhh----hccCchH-HHHHHHHHHHHHHHHH
Q 007262 41 AFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSD----SYLGRFL-TIGLASFCSLLGMFLL 115 (611)
Q Consensus 41 ~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Gr~~-~~~~~~~~~~i~~~~~ 115 (611)
+...+.......++..|..+.+|+++...+.+..+..+..++..|+.|+++| |+ |||| -++++.++..++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence 4444555556678899999999999999999999999999999999999999 76 8655 4556777788877777
Q ss_pred HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHH
Q 007262 116 WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYAT 195 (611)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (611)
.... |. ..........+.+..++..++......+..++..|..+++ ++|.+..++....
T Consensus 90 f~~~--p~-------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~------~~R~~l~~~~~~~ 148 (428)
T PF13347_consen 90 FSPP--PA-------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDP------DERTRLSSWRMIF 148 (428)
T ss_pred hccc--cc-------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccH------hhhhhHHHHHHHH
Confidence 6431 10 0001113334466666778999999999999999999873 6788888888777
Q ss_pred HHHHHHHHHHHHHHhhccc-------cchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccC
Q 007262 196 SAIAVVIALTAIVYIQDHL-------GWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLA 268 (611)
Q Consensus 196 ~~ig~~l~~~~~~~l~~~~-------gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (611)
..+|..+...+.+.+.+.. +|++...+.+++.++..++.....++...+.++.++
T Consensus 149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~------------------ 210 (428)
T PF13347_consen 149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK------------------ 210 (428)
T ss_pred HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc------------------
Confidence 7777765655555544321 577777666666555544444433330000000000
Q ss_pred CCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHh
Q 007262 269 LPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSI 348 (611)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (611)
+.+++...++-.++ |.+...+...++....+.
T Consensus 211 -----------------------------------------------~~~~~~~~~~~~~n-r~~~~l~~~~~~~~~~~~ 242 (428)
T PF13347_consen 211 -----------------------------------------------KISLRDSLRSLFRN-RPFRILLLAFFLQWLAFA 242 (428)
T ss_pred -----------------------------------------------ccccccchhhhccc-chHHHHHHHHHHHHhhhh
Confidence 00000000000011 122222221111111111
Q ss_pred hhcCCchhhhhhhc-ccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHH
Q 007262 349 NISQNSFPLLQASS-MDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMG 427 (611)
Q Consensus 349 ~~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~ 427 (611)
.... ...+.... +.... ..+.+.....+..++..++.. ++.+|+++| +.+..+.++.+++
T Consensus 243 ~~~~--~~~y~~~~vl~~~~------~~~~~~~~~~~~~~v~~~~~~----~l~~r~gk~-------~~~~~~~~~~~~~ 303 (428)
T PF13347_consen 243 LMNT--FLPYYFTYVLGNEG------LISIFMLIFFVASIVGSPLWG----RLSKRFGKK-------KVYIIGLLLAALG 303 (428)
T ss_pred hhhh--HHHHHHHHHhcCch------hhHHHHHHHHHHHHHHHHHHH----HHHHHccce-------eehhhhHHHHHHH
Confidence 1111 11111111 11110 112222333444455555543 455666544 2367777777777
Q ss_pred HHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCC-------chhhHHHHHHH
Q 007262 428 MVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFP-------KSMSSIAASLF 500 (611)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~ 500 (611)
.++..... ..+.+++.+..++.+++.+..+...++...+..+ ++..|...|++
T Consensus 304 ~~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~ 363 (428)
T PF13347_consen 304 FLLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVN 363 (428)
T ss_pred HHHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhh
Confidence 77766653 1367778888899999999999998888888776 35579999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc
Q 007262 501 GLGMAVANLLASAIVSAVDDITS 523 (611)
Q Consensus 501 ~~~~~lg~~l~~~i~~~i~~~~~ 523 (611)
++...++..++..+.+.+.+..+
T Consensus 364 ~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 364 SFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998876653
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-12 Score=128.36 Aligned_cols=324 Identities=17% Similarity=0.163 Sum_probs=215.3
Q ss_pred HHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 007262 52 TNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNI 131 (611)
Q Consensus 52 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 131 (611)
..+..-+++++|+|.+.+|.+.+...++..+..+++.+++.|+ |-.+.+..++++..+|..+=...
T Consensus 32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~------------- 97 (395)
T COG2807 32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG------------- 97 (395)
T ss_pred hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 4455677889999999999999999999999999999999997 99999999999988887665432
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 132 LTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQ 211 (611)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~ 211 (611)
+...++.+-.+.|.|.+......|+.+-+.||+ +.+..++.|.....+|+.+++.+...+.
T Consensus 98 -----------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk--------~~~~mtglYs~sl~~~aaLaa~lavpla 158 (395)
T COG2807 98 -----------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK--------RVGLMTGLYSTSLGAGAALAAALAVPLA 158 (395)
T ss_pred -----------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc--------chhhHHhHHHHHHHHHHHHHhhhhhHHH
Confidence 355688889999999999999999999999996 4577788999999999999998888887
Q ss_pred ccc-cchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCCCCCCcccccccccCCcccccC
Q 007262 212 DHL-GWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPT 290 (611)
Q Consensus 212 ~~~-gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (611)
++. |||..+.+.+...+++++..+.-..+.+ .+..+. + .
T Consensus 159 ~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~--~~~~~~---------------~----~------------------- 198 (395)
T COG2807 159 QHSGGWRGALGFWALLALLALLIWLPQALREQ--AASIAT---------------K----L------------------- 198 (395)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHhhhccccc--cccccc---------------c----c-------------------
Confidence 766 7999998888887777665543221110 000000 0 0
Q ss_pred chhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhhhcC-CchhhhhhhcccccCCC
Q 007262 291 SKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQ-NSFPLLQASSMDRHVTS 369 (611)
Q Consensus 291 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q-~~~~~~~~~~~~~~~~~ 369 (611)
..+.+-|+ +...+...+.+-+....+|+.+.+ +.+ ++..+++...
T Consensus 199 ----------------------~~~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~i--li~~G~sa~~-- 244 (395)
T COG2807 199 ----------------------VSVRKVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAI--LIDRGLSAAE-- 244 (395)
T ss_pred ----------------------cccccccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHH--HHHcCCCHHH--
Confidence 00011232 112222334444455666666666 544 2333343322
Q ss_pred ccccccccccchhH---HHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 007262 370 SFQIPAGSFGTFTI---ITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREG 446 (611)
Q Consensus 370 ~~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (611)
.+.+..+.. +..-+.+|. +.+|.. +.+........++.++++-+....
T Consensus 245 -----aG~llsl~~l~~~~~~ll~P~-------la~R~~------n~r~~~~~~~~~~l~G~~G~~~~P----------- 295 (395)
T COG2807 245 -----AGSLLSLMQLAQLPTALLIPL-------LARRSK------NQRPLVVLALLLMLVGLVGLLLAP----------- 295 (395)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHH-------HHHHhc------ccchHHHHHHHHHHHHHHHHHHhh-----------
Confidence 222222221 222233333 334422 223333444444444443333321
Q ss_pred ccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCC-chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 007262 447 YLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFP-KSMSSIAASLFGLGMAVANLLASAIVSAVDDITS 523 (611)
Q Consensus 447 ~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~ 523 (611)
.+..++| .+++|+|.+..+|....++...+. ++..+...|+.+....+-.++||.+++.+.|.++
T Consensus 296 --------~~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 296 --------GQLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred --------hhHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 1123333 478899999999999999888755 4555667788888888889999999999999886
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-11 Score=135.57 Aligned_cols=169 Identities=11% Similarity=0.151 Sum_probs=120.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhc---cCchHHHH-HHHHHHHHHHHH
Q 007262 39 NEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSY---LGRFLTIG-LASFCSLLGMFL 114 (611)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~~~~-~~~~~~~i~~~~ 114 (611)
..+..++.+..+..++..|..+.+|+++..+|.+..+.-+..++.-|+.|+++||. +||||-.+ ++.+.+.++.++
T Consensus 17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l 96 (460)
T PRK11462 17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL 96 (460)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH
Confidence 44555566666668899999999999999999999999999999999999999973 48765554 565677777666
Q ss_pred HHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHH
Q 007262 115 LWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYA 194 (611)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 194 (611)
+...+.++ .......+.+.-++..++.........++.+|..+++ ++|.+..++...
T Consensus 97 lf~~p~~s-----------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~------~eRt~l~s~r~~ 153 (460)
T PRK11462 97 AYSTPDLS-----------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDP------TQRISLQSWRFV 153 (460)
T ss_pred HHhCCCCC-----------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCH------HHHHHHHHHHHH
Confidence 55322110 1122344555566678888888888999999999873 889999999888
Q ss_pred HHHHHHHHHHHHHHHhhcc-------ccchhhhHHHHHHHHHH
Q 007262 195 TSAIAVVIALTAIVYIQDH-------LGWKVGFGVPAILMVLS 230 (611)
Q Consensus 195 ~~~ig~~l~~~~~~~l~~~-------~gw~~~f~~~~~~~~~~ 230 (611)
..++|..+++.+...+... .+|+....+.+++.++.
T Consensus 154 ~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~ 196 (460)
T PRK11462 154 LATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMM 196 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 8888887777664433322 24665544444443333
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-14 Score=144.22 Aligned_cols=179 Identities=20% Similarity=0.232 Sum_probs=149.6
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhcc-CchHH-HHHHHHHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYL-GRFLT-IGLASFCS 108 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Gr~~~-~~~~~~~~ 108 (611)
+.+|++.+.+++..+..|++..|.|.|+.|..|+|..++++..+.|-++...++++.||+|||++ |||.. -+++++..
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999998 76644 44455556
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhH
Q 007262 109 LLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188 (611)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (611)
+++.+...+++ ..+..+..+..+.+|+-..+.+-..-....|..|+ +..|++
T Consensus 332 ~~~~~~~w~~~---------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK-------~AaGtA 383 (448)
T COG2271 332 TASLVLYWLAP---------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK-------KAAGTA 383 (448)
T ss_pred HHHHHHHHcCC---------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH-------hhccch
Confidence 66666666644 12567778888889988888887777888899998 778888
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHh
Q 007262 189 FGWYYATSAI-AVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIA 237 (611)
Q Consensus 189 ~~~~~~~~~i-g~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (611)
.+....+..+ |..++....|++.|.+||...|.+..+..+++.++++..
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9988888887 999999999999999999999988777766666555443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-12 Score=128.96 Aligned_cols=154 Identities=12% Similarity=0.023 Sum_probs=116.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhh
Q 007262 41 AFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAM 120 (611)
Q Consensus 41 ~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~ 120 (611)
+++-...-.....+..-++...|++.-+...+......+..+++...|.++|++ |||+.+.+..+...+.-++-..++
T Consensus 87 wmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~sp- 164 (528)
T KOG0253|consen 87 WMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGASP- 164 (528)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCCC-
Confidence 333333334445555666778889999999999999999999999999999997 999999888777666555555444
Q ss_pred cCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHH
Q 007262 121 IPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAV 200 (611)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 200 (611)
|+..+++.|.+.|+|.|+ .|...++-.|..|. ..|....-.. ....+|.
T Consensus 165 ----------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~-------~~r~~~~V~~-~~waig~ 213 (528)
T KOG0253|consen 165 ----------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPS-------SHRWLLTVMS-FFWAIGQ 213 (528)
T ss_pred ----------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccC-------cCCCcchhHH-HHHHHHH
Confidence 677799999999999999 89999999999998 4444433333 4566777
Q ss_pred HHHHHHHHHhhccccchhhhHHHHHHH
Q 007262 201 VIALTAIVYIQDHLGWKVGFGVPAILM 227 (611)
Q Consensus 201 ~l~~~~~~~l~~~~gw~~~f~~~~~~~ 227 (611)
+..-.+.=.+..++||||.........
T Consensus 214 v~ea~law~vm~~~gwr~~l~~~~~pl 240 (528)
T KOG0253|consen 214 VFEALLAWGVMSNFGWRYLLFTSSTPL 240 (528)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHH
Confidence 777766655566789998776655433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-11 Score=127.83 Aligned_cols=357 Identities=14% Similarity=0.121 Sum_probs=213.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhc---cCch-HHHHHHHHHHHHHHHH
Q 007262 39 NEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSY---LGRF-LTIGLASFCSLLGMFL 114 (611)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~-~~~~~~~~~~~i~~~~ 114 (611)
..+..++.+-.+..++..|.++..|+++..+|.++.+.=+..++.-|+.|.+.||. +||+ +=++.+.+.+.+..++
T Consensus 20 gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l 99 (467)
T COG2211 20 GDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVL 99 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHH
Confidence 55556666667778999999999999999999999999999999999999999975 3554 4555666777777777
Q ss_pred HHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHH
Q 007262 115 LWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYA 194 (611)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 194 (611)
+..++.. ..+.+..-.++.-++.++++....-...++.+++.+++ ++|.+..++...
T Consensus 100 ~F~~p~~-----------------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~------~ER~~l~s~R~~ 156 (467)
T COG2211 100 LFITPDF-----------------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDP------QERASLTSWRMV 156 (467)
T ss_pred HHcCCCc-----------------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCH------HHHHHHHHHHHH
Confidence 7655411 11235556677788899999999999999999999985 899999999999
Q ss_pred HHHHHHHHHHHHHHHhhc-------cccchhhhHHHHHHHHHHHHHHHHhCc-cccccCCCCchhHHHHHHHHHHHhhcc
Q 007262 195 TSAIAVVIALTAIVYIQD-------HLGWKVGFGVPAILMVLSLLLFFIASP-LYVKLKASSSLLTGFAQVAVVAYKNRK 266 (611)
Q Consensus 195 ~~~ig~~l~~~~~~~l~~-------~~gw~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (611)
..++|..+...+.+.+.. ..||+..-.+.+++..+..++.+...+ +..+..+.++.
T Consensus 157 ~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~---------------- 220 (467)
T COG2211 157 FASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTG---------------- 220 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccc----------------
Confidence 998887766665544432 235554444433333333332222211 11111100000
Q ss_pred cCCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhH
Q 007262 267 LALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMM 346 (611)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (611)
...++.+... .....|.++..+.+.++ .
T Consensus 221 ------------------------~~~~~~~~~~-------------------------~~~~Nrp~~~~l~~~l~---~ 248 (467)
T COG2211 221 ------------------------VKLKLKDSFL-------------------------LIFKNRPLLLLLLMNLL---L 248 (467)
T ss_pred ------------------------ccccHHHHHH-------------------------HHHccchHHHHHHHHHH---H
Confidence 0000000000 00011222222222222 2
Q ss_pred HhhhcC-Cchhhhhhh-cccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHH
Q 007262 347 SINISQ-NSFPLLQAS-SMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLS 424 (611)
Q Consensus 347 ~~~~~q-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~ 424 (611)
+..++. .+...+... .++... ..+...........++..++ ..++.+|+++ ++....|.++.
T Consensus 249 ~~~~~i~~s~~~yy~~y~lg~~~-----l~~~~~~~~~~~~~l~~~~~----~p~L~~~~gk-------k~~~~~~~~~~ 312 (467)
T COG2211 249 FIAFNIRGSIMVYYVTYVLGDPE-----LFAYLLLLASGAGLLIGLIL----WPRLVKKFGK-------KKLFLIGLLLL 312 (467)
T ss_pred HHHHHHHhhhhheeEEEEcCChH-----HHHHHHHHHHHHHHHHHHHh----HHHHHHHhch-------HHHHHHHHHHH
Confidence 222222 222111111 111111 11111222222222222332 4445566543 34466666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccC-------CchhhHHHH
Q 007262 425 CMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEF-------PKSMSSIAA 497 (611)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~-------P~~~rg~~~ 497 (611)
+++.+..-+.. ..+....+...++.++|.+...+..++.+.+.. -.+..|..-
T Consensus 313 ~i~~~~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~ 372 (467)
T COG2211 313 AVGYLLLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVY 372 (467)
T ss_pred HHHHHHHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHH
Confidence 66666555442 124455555667888899998888888887753 566778899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc
Q 007262 498 SLFGLGMAVANLLASAIVSAVDDIT 522 (611)
Q Consensus 498 g~~~~~~~lg~~l~~~i~~~i~~~~ 522 (611)
|.+.+++-+|.+++..+.++++...
T Consensus 373 s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 373 SGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988765
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-12 Score=142.84 Aligned_cols=179 Identities=14% Similarity=0.131 Sum_probs=132.4
Q ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007262 29 GLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCS 108 (611)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 108 (611)
+++.+...+...++..+.+|++..++|.|+++.+|++..+.+.+.....++..++.+++|+++||+ |||+++.++.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 444444444445566788899999999999999999998888888888889999999999999997 9999988887654
Q ss_pred HHHHHHHH-HhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 109 LLGMFLLW-LTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 109 ~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
.++.+.+. ... ..+...+++++++.+++.+...+...+++.|.+|+ +.|++
T Consensus 327 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~-------~~Rg~ 378 (490)
T PRK10642 327 FVLAIPAFILIN---------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPT-------HIRYS 378 (490)
T ss_pred HHHHHHHHHHHh---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------ccchH
Confidence 44333222 111 01355677888888888777778888899999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-cchhhhHHHHHHHHHHHHHHHH
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHL-GWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
+++..+....+++.++|.+.+++.+.. +|+.++++..+..+++++..++
T Consensus 379 ~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 379 ALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 999866667777788999999988754 4676665544444444443333
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-10 Score=123.75 Aligned_cols=87 Identities=15% Similarity=0.170 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccch
Q 007262 460 MWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGR 539 (611)
Q Consensus 460 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~ 539 (611)
+.+.+.-++.|+..+..++..-++..+..|++..+...|++.++....+.+||.+++.+.+.+++
T Consensus 381 ~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~--------------- 445 (477)
T PF11700_consen 381 WEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS--------------- 445 (477)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------
Confidence 33444456788899999999999999999999999999999999999999999999999988752
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007262 540 YDNYYWLLAIMSLVNLVYFLVC 561 (611)
Q Consensus 540 ~~~~f~~~~~~~~v~~~~~~~~ 561 (611)
.+.-+..+.++.++++++++.+
T Consensus 446 ~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 446 QRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred chhHHHHHHHHHHHHHHHHhhc
Confidence 2455666667777777666433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-12 Score=138.78 Aligned_cols=176 Identities=11% Similarity=0.107 Sum_probs=132.4
Q ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007262 29 GLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCS 108 (611)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 108 (611)
+++..+..+....+....++....++|.|+++++|++..+.+.+.+...++..++.+++|+++||+ |||+.+..+.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~ 292 (393)
T PRK15011 214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG 292 (393)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence 334344434444444455555667899999999999999999998888888888999999999997 9999887776555
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhH
Q 007262 109 LLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188 (611)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (611)
.+.......+. +.+.+++.+++.+++.|...+..+.+..|.+|+ + |+++
T Consensus 293 ~~~~~~~~~~~-----------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-------~-~g~~ 341 (393)
T PRK15011 293 VCFYAGMLMAH-----------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-------Q-AGSA 341 (393)
T ss_pred HHHHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------C-cchH
Confidence 44433333222 455566778877777777777777888888875 3 6788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Q 007262 189 FGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 189 ~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
.+.++...++|..++|.++|++.+.+||+..|++..++.+++++..+.
T Consensus 342 ~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 342 TTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 898888889999999999999999899999998877777666655443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.4e-12 Score=136.57 Aligned_cols=182 Identities=13% Similarity=0.036 Sum_probs=132.8
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
++++.+..+....++..+.+|...++.+.|+++.+|++......+..+..+...++.++.|+++||+ |||+++..+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~ 325 (438)
T PRK09952 247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI 325 (438)
T ss_pred HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence 3444444444466677788899999999999999999988766666666777788899999999997 999998888766
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
..++.+.+..... . ......+++..++.+++.+...+..+++++|.+|. +.|++
T Consensus 326 ~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~-------~~r~t 379 (438)
T PRK09952 326 GTLSAFPFFMALE-A------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA-------SYRYS 379 (438)
T ss_pred HHHHHHHHHHHHH-c------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc-------chhHH
Confidence 5554433332110 0 01233444556667888888888899999999999 88988
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhccc--cchhhhHHHHHHHHHHHHHHHH
Q 007262 188 FFGWYYAT-SAIAVVIALTAIVYIQDHL--GWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 188 ~~~~~~~~-~~ig~~l~~~~~~~l~~~~--gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
+.++.+.. ..+|+.++|.+.+++.+.. +|..++.+.++..+++.+..+.
T Consensus 380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 88886654 4589999999999998743 4888777766666666555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.1e-10 Score=114.59 Aligned_cols=374 Identities=14% Similarity=0.118 Sum_probs=212.4
Q ss_pred HHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccC-----ch-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 007262 58 LMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLG-----RF-LTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNI 131 (611)
Q Consensus 58 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----r~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 131 (611)
+..|++++..-.+.++...++... ..+..|+.||+. + || +=+..|.++++.+..+..++.-+-.-
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~------- 76 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAE------- 76 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcc-------
Confidence 445788888888877777666544 688899999997 6 44 44555666777666665544311110
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 132 LTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQ 211 (611)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~ 211 (611)
..+..............+++.+.|+|.+....+..++++|..|+ ++|.++.++.+...-+|.+++.++.+.+.
T Consensus 77 ~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e-------~~R~~~v~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 77 SGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE-------ERRPRVVAIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred cccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00000011112233556668889999999999999999999999 99999999999999999999999999988
Q ss_pred ccccchhhhHH----HHHHHHHHHHHHHHhCccccccCC-CCchhHHHHHHHHHHHhhcccCCCCCCcccccccccCCcc
Q 007262 212 DHLGWKVGFGV----PAILMVLSLLLFFIASPLYVKLKA-SSSLLTGFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLL 286 (611)
Q Consensus 212 ~~~gw~~~f~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (611)
+.++..-..-+ ..+..++.++..+-..++..+..+ .+++
T Consensus 150 ~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~------------------------------------ 193 (403)
T PF03209_consen 150 DPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERP------------------------------------ 193 (403)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCC------------------------------------
Confidence 87763332222 222222222222222222211110 0000
Q ss_pred cccCchhhhhhhhhh-ccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhhhcCCchhhhhhhcccc
Q 007262 287 IVPTSKLRFLNKACL-IRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASSMDR 365 (611)
Q Consensus 287 ~~~~~~~~~l~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ 365 (611)
+.++.+.... ..+ .+.++++.++.+ .+ ..++.| ...++.
T Consensus 194 -----~~~f~~a~~~~~~~-----------------------~~a~~f~~fl~l---~t--~a~~~Q-------D~iLEP 233 (403)
T PF03209_consen 194 -----RPPFREAWRQVWAS-----------------------PQARRFFVFLFL---GT--LAFFMQ-------DVILEP 233 (403)
T ss_pred -----CccHHHHHHHHHhC-----------------------CChhHHHHHHHH---HH--HHHHhh-------HHHcCC
Confidence 0000000000 000 011222222111 11 111223 111111
Q ss_pred cCCCcccccccc---ccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007262 366 HVTSSFQIPAGS---FGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRA 442 (611)
Q Consensus 366 ~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~ 442 (611)
..+.-+..+++. ++.+.....++...+..+... +|. ++.+...+|..+..+++.......
T Consensus 234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~~-------~~~~~a~~G~~~~~~~f~lii~a~------- 296 (403)
T PF03209_consen 234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLS---RRL-------GKKRTAALGCLLGALAFALIILAG------- 296 (403)
T ss_pred chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC-------CchHHHHHHHHHHHHHHHHHHHHH-------
Confidence 111112233332 223333444455444444321 222 233334556666666555443332
Q ss_pred hhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 007262 443 IREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDIT 522 (611)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~ 522 (611)
..-+.+.+.+..+++|++.++......+.+.+.++++..|..+|.+...+.++..++..+.+.+.|..
T Consensus 297 ------------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 297 ------------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred ------------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11256778888999999999999999999999999999999999999999999999999999988765
Q ss_pred cCCCCccccccCcccchhHHHHHHHHHHHHHHHHHH
Q 007262 523 SKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYF 558 (611)
Q Consensus 523 ~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~ 558 (611)
. ++..+.....|..+|.+=+.+.++++.+.
T Consensus 365 ~------~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 365 R------ALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred H------HhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3 12221122235556655555555555444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-12 Score=139.37 Aligned_cols=175 Identities=12% Similarity=0.082 Sum_probs=133.0
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
.+|.+.+..++....++++..++|.|+++++|++..++++..+...++..++.+++|+++||+ |||+.+.+...+..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 466667777777778888889999999999999999999999999999999999999999997 9888776654444433
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
..+..+.. ..+....++.+++.|++..+..........|.+|+ +.|+++.++
T Consensus 338 ~~~~~~~~---------------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~-------~~~g~a~gi 389 (467)
T PRK09556 338 FTLGVYQH---------------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK-------KAIGVANGI 389 (467)
T ss_pred HHHHHHHh---------------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch-------hhHHHHHHH
Confidence 32222211 01344455667777755444443444667799998 999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHhhc------------cccchhhhHHHHHHHHHHHHHHH
Q 007262 192 YYATSAI-AVVIALTAIVYIQD------------HLGWKVGFGVPAILMVLSLLLFF 235 (611)
Q Consensus 192 ~~~~~~i-g~~l~~~~~~~l~~------------~~gw~~~f~~~~~~~~~~~~~~~ 235 (611)
.+...++ |+.++|.+.|++.+ ..||+..|++..++.+++.+..+
T Consensus 390 ~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 390 KGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 9998886 77999999999999 57899999887766666655443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-12 Score=135.96 Aligned_cols=171 Identities=18% Similarity=0.027 Sum_probs=131.0
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
++++.++......++.....+....+++.|+++++|.+..+.+.+.....++..++.+++|+++||+ |||+.+..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~ 294 (394)
T TIGR00883 216 KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVL 294 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHH
Confidence 3333455556667777788888889999999999999999999999999999999999999999997 999987765554
Q ss_pred HHHHH-HHH-HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhh
Q 007262 108 SLLGM-FLL-WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVL 185 (611)
Q Consensus 108 ~~i~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r 185 (611)
..+.. ... .+.. ..+.+.+++..++.+++.+...+...+++.|.+|+ +.|
T Consensus 295 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~ 346 (394)
T TIGR00883 295 AALLAVPLLMALLD---------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPT-------EVR 346 (394)
T ss_pred HHHHHHHHHHHHhc---------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc-------cce
Confidence 44332 222 1211 01455566777888888889999999999999999 778
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHhhcccc-chhhhHHHHHHH
Q 007262 186 ESFFGWYY-ATSAIAVVIALTAIVYIQDHLG-WKVGFGVPAILM 227 (611)
Q Consensus 186 ~~~~~~~~-~~~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~~ 227 (611)
+++++..+ ....+|..++|.++|++.+..| |+..++...+..
T Consensus 347 ~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 347 YTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred eeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 88888744 4456889899999999999888 887666555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.4e-12 Score=134.75 Aligned_cols=172 Identities=10% Similarity=0.032 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhCCC--------hhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007262 37 IANEAFEKVASYGLVTNMILYLMKDYHLG--------VAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCS 108 (611)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 108 (611)
++..++..........+.+.|+++ .|.+ .+..+.+.++..+...++.++.|+++||+ |||+++.++.++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~~ 291 (418)
T TIGR00889 214 FFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVAW 291 (418)
T ss_pred HHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 334444444444455677888764 4544 35668888889999999999999999997 9999999999988
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhH
Q 007262 109 LLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188 (611)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (611)
.++..++...... ..+.+.+++.+++.|++.+...+....++.|.+|+ +.|++.
T Consensus 292 ~v~~~l~~~~~~~-------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~-------~~~g~~ 345 (418)
T TIGR00889 292 ALRFGFFAYGDPE-------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV-------HIRASA 345 (418)
T ss_pred HHHHHHHHHcCcc-------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHH
Confidence 8877666542200 01345677789999999999999999999999999 999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhhcc------ccchhhhHHHHHHHHHHHHHHHH
Q 007262 189 FGWYY-ATSAIAVVIALTAIVYIQDH------LGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 189 ~~~~~-~~~~ig~~l~~~~~~~l~~~------~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
+++.+ ....+|..++|.++|++.+. +||+..|.+.+++.+++.++.+.
T Consensus 346 ~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~ 400 (418)
T TIGR00889 346 QGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMI 400 (418)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99997 56789999999999999886 46999998877766655554433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.5e-12 Score=132.97 Aligned_cols=168 Identities=15% Similarity=0.111 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
.+.+....++..+.......+.+.|. +++|.+..+.+.+.+.+.++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 284 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGM 284 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHH
Confidence 33333344444444445555666665 56899998999999999999999999999999997 99999999888888877
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
++..+..+ .+...++...++.+++.+...+..++++.|.+|+ ++|++.++++
T Consensus 285 ~~~~~~~~---------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-------~~~~~~~g~~ 336 (377)
T TIGR00890 285 AAMLFIPM---------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGP-------ANSAANYGFL 336 (377)
T ss_pred HHHHHccc---------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhh-------hhhhhHhHHH
Confidence 66654330 0223344556778888888888888999999998 8899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHH
Q 007262 193 YATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLS 230 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 230 (611)
+...++|..++|.+.|++.+..||++.|.+.+++.+++
T Consensus 337 ~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 337 YTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 99999999999999999999999999998877665554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-11 Score=132.00 Aligned_cols=166 Identities=11% Similarity=-0.029 Sum_probs=129.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHH
Q 007262 38 ANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWL 117 (611)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~ 117 (611)
...++.....+.+..++|.|+++ .|++..+.+.+.+.+.++..++.++.|+++||+ |||+.+.++.+...++.+...+
T Consensus 227 ~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 304 (406)
T PRK11551 227 ISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAA 304 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555667777888888875 799999999999999999999999999999997 9999988876666665554443
Q ss_pred hhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHH
Q 007262 118 TAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSA 197 (611)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 197 (611)
.. +.+.+.+..++.|++.++..+...++..|.+|+ +.|++..++.+....
T Consensus 305 ~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~ 354 (406)
T PRK11551 305 AP-----------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPT-------QVRGTGVGAAVAVGR 354 (406)
T ss_pred cC-----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcch-------hhhhhhhhHHHHhhh
Confidence 22 344455666778888888889999999999999 889999999999999
Q ss_pred HHHHHHHHHHHHhhccc-cchhhhHHHHHHHHHHHHHHH
Q 007262 198 IAVVIALTAIVYIQDHL-GWKVGFGVPAILMVLSLLLFF 235 (611)
Q Consensus 198 ig~~l~~~~~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~ 235 (611)
+|..++|.+.|++.+.. +|...+++...+.+++.++.+
T Consensus 355 ~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 355 LGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 455556555555554444443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.9e-12 Score=120.99 Aligned_cols=136 Identities=13% Similarity=0.215 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 007262 52 TNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNI 131 (611)
Q Consensus 52 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 131 (611)
.-+..+.+.+.+++.++..++-++|..=..+.++++||+.||.+|-|..-.+-+.+..+|-++.+.-.
T Consensus 64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg------------ 131 (459)
T KOG4686|consen 64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG------------ 131 (459)
T ss_pred hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch------------
Confidence 33556777778888888899999999999999999999999998988776666666677776665321
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 132 LTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQ 211 (611)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~ 211 (611)
....+|.+..+|++.|+|.-....+.+.|...+|.. ++...++++.....-+|...-..+.+++.
T Consensus 132 --------i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKG-------KELn~vfGlqlSvAR~GstvNf~lm~~ly 196 (459)
T KOG4686|consen 132 --------ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKG-------KELNFVFGLQLSVARLGSTVNFLLMPFLY 196 (459)
T ss_pred --------HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecC-------ccccchhhHHHHHHHhhceeeeeecHHHH
Confidence 123789999999999999888888899999999999 88999999998888888887777777777
Q ss_pred ccc
Q 007262 212 DHL 214 (611)
Q Consensus 212 ~~~ 214 (611)
+..
T Consensus 197 ~~~ 199 (459)
T KOG4686|consen 197 DTM 199 (459)
T ss_pred HHH
Confidence 653
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-11 Score=129.19 Aligned_cols=163 Identities=12% Similarity=0.086 Sum_probs=128.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhh
Q 007262 40 EAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTA 119 (611)
Q Consensus 40 ~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~ 119 (611)
.++..........+++.|+++++|.+..+.+++.+.......++.+++|+++||+ |||+++.++.++..++........
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T TIGR00899 208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADN 286 (375)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444556788899999999999999988887777788899999999997 999998887666555444433333
Q ss_pred hcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHH
Q 007262 120 MIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIA 199 (611)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 199 (611)
+.+.+++.+++.|++.+...+....+..|..|+ + ++++++.++...++|
T Consensus 287 -----------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~g 335 (375)
T TIGR00899 287 -----------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-------R-AGAATTLYTNTGRVG 335 (375)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-------h-hhHHHHHHHHHHHHH
Confidence 456667778888998888888888888898775 3 458899999999999
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHH
Q 007262 200 VVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 200 ~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
..++|.+.|++.+..||+..|++.++..+++.++.
T Consensus 336 ~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 336 WIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887766665554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=130.62 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=131.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 007262 42 FEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMI 121 (611)
Q Consensus 42 ~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~ 121 (611)
+..+.++.+..+++.|+.+ .|+ .+.++..+.+.++..++.++.|++.||+ |||+.+.++..+..++.++.....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-- 300 (399)
T PRK05122 227 LASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP-- 300 (399)
T ss_pred HHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc--
Confidence 3445566667788888764 465 3456667778888889999999999997 999999888887777776665533
Q ss_pred CCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHH
Q 007262 122 PKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVV 201 (611)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 201 (611)
+.+.+++.+++.|++.+...+.....+.|.+|+ +.|+++.++++...++|..
T Consensus 301 ---------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~ 352 (399)
T PRK05122 301 ---------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPP-------QNRGAALGAYSVFLDLSLG 352 (399)
T ss_pred ---------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHH
Confidence 455667788899999999888888888898888 8999999999999999999
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCc
Q 007262 202 IALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASP 239 (611)
Q Consensus 202 l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (611)
+++.+.|++.+..||+..|++.+.+.+++.++.+..++
T Consensus 353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999888777766665554444
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-11 Score=125.38 Aligned_cols=169 Identities=21% Similarity=0.299 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchH-HHHHHHHHHHHHHH
Q 007262 35 FIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFL-TIGLASFCSLLGMF 113 (611)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~-~~~~~~~~~~i~~~ 113 (611)
...+..++..........+.+.|+++.+|.+..+.+++.....++..++.++.|+++||+ |||+ .+.++.++..++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~ 257 (352)
T cd06174 179 LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALGLL 257 (352)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHH
Confidence 334445556666677777888888888899999999999999999999999999999997 9999 99999888888887
Q ss_pred HHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHH
Q 007262 114 LLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYY 193 (611)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (611)
...... +.+.+++..++.|++.+...+....++.|..|+ ++|++.++..+
T Consensus 258 ~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 307 (352)
T cd06174 258 LLALAP-----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPP-------EARGTASGLFN 307 (352)
T ss_pred HHHHhc-----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH-------HHHHHHHHHHH
Confidence 777644 466788889999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHH
Q 007262 194 ATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 194 ~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
...++|..++|.+.+.+.+..+|+..|.+.+++.+++.+..
T Consensus 308 ~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 308 TFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999998999999998887776665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-11 Score=130.86 Aligned_cols=170 Identities=12% Similarity=0.148 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
.++.+.+..++.....+++..++|.|+++++|++..+++.+.+.+.++..++.+++|+++||+ |||+.+..+..+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence 344445555666677788889999999999999999999999999999999999999999997 9999888776665555
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
..+..... +...+.+..++.|++.++..+...++..+..|. + ++...+.
T Consensus 285 ~~~~~~~~-----------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-------~-~~~~~g~ 333 (394)
T PRK03699 285 MYLFVNTD-----------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-------A-SPKLVNF 333 (394)
T ss_pred HHHHHHcC-----------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-------C-CHHHHHH
Confidence 44443322 334455566778888888888888888887664 2 3445677
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Q 007262 192 YYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLL 233 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (611)
.....++|..++|.+.|++.+..||+..+++..++.+++.++
T Consensus 334 ~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 334 ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 777888999999999999999999999988877666555443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-11 Score=127.93 Aligned_cols=168 Identities=11% Similarity=-0.010 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
..+..++..++...+.+...++.+.|+++ +|.+..+.+.+.++..++..++.+++|++.||+ |+|+++.++.++..+.
T Consensus 206 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~~ 283 (382)
T TIGR00902 206 MNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVGR 283 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHHH
Confidence 35555666677777788888899999965 899999999999998889999999999999997 9999999999999998
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
..+..+++ +.+.+++..++.|+..|...+....++.+. |+ +.|++..++
T Consensus 284 ~~~~~~~~-----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~-------~~~~~~q~~ 332 (382)
T TIGR00902 284 WAIIGAIE-----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG-------SEIAKLQAL 332 (382)
T ss_pred HHHHHhHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH-------hhHHHHHHH
Confidence 88877655 677788899999999999999999999987 77 778888998
Q ss_pred HHH-HHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Q 007262 192 YYA-TSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLL 233 (611)
Q Consensus 192 ~~~-~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (611)
++. ...+|..+++.++|++.|++|+ ..|++.+.+.++++++
T Consensus 333 ~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 333 YNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 764 5679999999999999999986 5576666666555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-11 Score=128.82 Aligned_cols=165 Identities=13% Similarity=0.043 Sum_probs=128.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhCCChh---hhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHH
Q 007262 41 AFEKVASYGLVTNMILYLMKDYHLGVA---KGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWL 117 (611)
Q Consensus 41 ~~~~~~~~~~~~~~~~yl~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~ 117 (611)
++..+....+..+++.|+.+..+.... ..+.+.++..++..++.+..|+++||+ |||+++.++.++..++.+....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T PRK09874 229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHH
Confidence 334444445556777887765442221 234555666677888899999999997 9999999888877776665554
Q ss_pred hhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHH
Q 007262 118 TAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSA 197 (611)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 197 (611)
.. +.+.+++.+++.|++.+...+...+++.+..|+ +.|++.++.++...+
T Consensus 308 ~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~ 357 (408)
T PRK09874 308 VQ-----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSN-------QIAGRIFSYNQSFRD 357 (408)
T ss_pred hc-----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCc-------ccceeeehHHHHHHH
Confidence 33 456677888999999999999999999888887 788999999999999
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Q 007262 198 IAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 198 ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
+|..++|.++|.+.+..||+..|++.+++.+++.++.+.
T Consensus 358 ~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 358 IGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877776665544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=132.78 Aligned_cols=160 Identities=9% Similarity=0.010 Sum_probs=126.7
Q ss_pred HHhhhhHHHHHHHHHHHh---CCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 007262 45 VASYGLVTNMILYLMKDY---HLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMI 121 (611)
Q Consensus 45 ~~~~~~~~~~~~yl~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~ 121 (611)
..+.......+.|+.+.+ +.+..+.+.+.++..++..++.+++|+++||+ |||+.+.++.++..++.++..++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~-- 313 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT-- 313 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc--
Confidence 333334455777776543 56667788999999999999999999999997 999999998888888877776644
Q ss_pred CCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH-HHHHHHHHH
Q 007262 122 PKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW-YYATSAIAV 200 (611)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~ 200 (611)
+.+.+++.+++.+++.+...+....++.|.+|+ +.|++..+. ++....+|.
T Consensus 314 ---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~a~~~~~~~~~~~~lg~ 365 (420)
T PRK09528 314 ---------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDV-------RLSATIYLVGFQFAKQLGA 365 (420)
T ss_pred ---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------cceeeeeeehHHHHHHHHH
Confidence 566677889999999888888888899999988 667766654 566778999
Q ss_pred HHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH
Q 007262 201 VIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFF 235 (611)
Q Consensus 201 ~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (611)
.++|.+.|++.+.+||+..|.+.+++.++..++.+
T Consensus 366 ~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 366 VFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987776655544433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.4e-11 Score=127.42 Aligned_cols=176 Identities=13% Similarity=0.095 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
.+.+.+...+....++++.++++.|+++ +|++..+++...+.+.++..++.++.|+++||+ |||+.+.++..+..++.
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 4444555556677888899999999986 899999999999999999999999999999997 99999988877776666
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
....... . +...+ ..++.|++.+...|.......+.++++ +.+++.++..
T Consensus 285 ~~~~~~~---~-------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~------~~~g~~~g~~ 334 (393)
T PRK09705 285 CGFIWLP---L-------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQP------AIAGKLVAFM 334 (393)
T ss_pred HHHHHcc---c-------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCH------HHHHHHHHHH
Confidence 5443211 1 11112 234568888888888887888887641 6789999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHHHHHHHhCcc
Q 007262 193 YATSAIAVVIALTAIVYIQDHLG-WKVGFGVPAILMVLSLLLFFIASPL 240 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~ 240 (611)
+...+++..++|.+.|++.|..| |...|.+.+...++..+..+...++
T Consensus 335 ~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 335 QGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999876 8888888776666655554444443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-11 Score=136.63 Aligned_cols=134 Identities=16% Similarity=0.106 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHH
Q 007262 71 NVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISS 150 (611)
Q Consensus 71 ~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (611)
....+..++..++.+++|+++||+ |||+++.++.++..++.+++++.. +...+++.
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~-----------------------s~~~ll~~ 654 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN-----------------------SESAMIAL 654 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc-----------------------cHHHHHHH
Confidence 334556678889999999999997 999999999999888887777654 34456677
Q ss_pred HHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHH
Q 007262 151 FCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLS 230 (611)
Q Consensus 151 ~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 230 (611)
+++.+++.++..+...++++|++|. +.|++++++.+....+|++++|.+++.+.+. +...+|++.+++.+++
T Consensus 655 ~~l~g~~~~~~~~~~~a~~aEl~Pt-------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~ 726 (742)
T TIGR01299 655 LCLFGGLSIAAWNALDVLTVELYPS-------DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACG 726 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 7788888888899999999999999 9999999999999999999999999988764 4566777777666665
Q ss_pred HHHHHH
Q 007262 231 LLLFFI 236 (611)
Q Consensus 231 ~~~~~~ 236 (611)
.++.+.
T Consensus 727 ~ll~~~ 732 (742)
T TIGR01299 727 GLLALK 732 (742)
T ss_pred HHHHHh
Confidence 554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.3e-11 Score=128.43 Aligned_cols=162 Identities=10% Similarity=0.033 Sum_probs=132.0
Q ss_pred hhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 007262 47 SYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKP 126 (611)
Q Consensus 47 ~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 126 (611)
.+++..++|.|+++.+|.+..+.+++.+...++..++.++.|+++||. ++++.+..+.++..++.++..+..
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~------- 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP------- 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence 345667889999988999999999999999999999999999999995 888888888777777766665433
Q ss_pred CCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 007262 127 SPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTA 206 (611)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~ 206 (611)
+.....+..++.|++.+...+...+++.|..|+ +.|++.+++++...++|..++|.+
T Consensus 311 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~~g~~l 367 (417)
T PRK10489 311 ----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPD-------EMLGRINGLWTAQNVTGDAIGAAL 367 (417)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HHHHHHHHHHHHHHhhhHhHHHHH
Confidence 455566777888888888878888999999998 899999999999999999999999
Q ss_pred HHHhhccccchhhhHHHHHHHHHHHHHHHHhCc
Q 007262 207 IVYIQDHLGWKVGFGVPAILMVLSLLLFFIASP 239 (611)
Q Consensus 207 ~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (611)
.|++.+.+|++..+++.+...++..++.....+
T Consensus 368 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 368 LGGLGAMMTPVASASASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999888887766555444444433333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.4e-11 Score=129.27 Aligned_cols=176 Identities=17% Similarity=0.211 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhcc-CchHHH-HHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYL-GRFLTI-GLASFCSL 109 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Gr~~~~-~~~~~~~~ 109 (611)
.+|...+..++.....|++..++|.|++++.|++..+++.+...+.++..++.+++|+++||+. |||+.. .....+..
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~ 333 (452)
T PRK11273 254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 333 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 3555566666777777888999999999999999999999988888999999999999999961 334332 22222333
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
++.+...+.. . .+....++..++.|.+..........+..|.+|+ +.|++++
T Consensus 334 ~~~~~~~~~~---~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~ 385 (452)
T PRK11273 334 IATIVYWLNP---A------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTAA 385 (452)
T ss_pred HHHHHHHHhc---c------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh-------hhhhhHH
Confidence 3333222211 0 1233333444445544333333344567799998 8999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhccccchhhhHHHHHHHHHHHHHHH
Q 007262 190 GWYYATSAIAVVI-ALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFF 235 (611)
Q Consensus 190 ~~~~~~~~ig~~l-~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (611)
++.+...++|+.+ +|.+.|++.+..||+..|++.+...++++++..
T Consensus 386 g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 386 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 9998888888665 799999999999999999888776666655443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-11 Score=126.89 Aligned_cols=187 Identities=15% Similarity=0.121 Sum_probs=138.1
Q ss_pred hhccCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCc-hHHH
Q 007262 24 RRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMK-DYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGR-FLTI 101 (611)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr-~~~~ 101 (611)
...+.+||.+++..+..++..+-++.+.+..-.|+++ |.+-+.+..|+++++..++..+..+..|+.+.|. |+ |+-+
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pl 105 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPL 105 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCH
Confidence 3456899999999999999988888888888889876 6778888999999999999999999999999996 74 6666
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCc
Q 007262 102 GLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNN 181 (611)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~ 181 (611)
+.+.++.++|-++.......|. ...+.++++|++.|+|.+. .+..-+|+++....
T Consensus 106 i~s~ii~~~g~llY~~l~~~~~------------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~------ 160 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYVPN------------------GVKYLMLVARILTGVGVGN-FAVLRAYIADASTV------ 160 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhccc------------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccCc------
Confidence 7788888888888844332332 2567889999999999776 47788999997777
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHH----HHhhcc---------ccchhhhHHHHHHHHHHHHHHHHh
Q 007262 182 ERVLESFFGWYYATSAIAVVIALTAI----VYIQDH---------LGWKVGFGVPAILMVLSLLLFFIA 237 (611)
Q Consensus 182 ~~~r~~~~~~~~~~~~ig~~l~~~~~----~~l~~~---------~gw~~~f~~~~~~~~~~~~~~~~~ 237 (611)
+.|.++++....+..+|..+||.+. +..... .-|..+-|+.+++.++.+++....
T Consensus 161 -~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~ 228 (488)
T KOG2325|consen 161 -EDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFF 228 (488)
T ss_pred -cchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhh
Confidence 6777777776665556666666553 322221 124445566666655555544443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=109.77 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHH
Q 007262 74 FFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCF 153 (611)
Q Consensus 74 ~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (611)
+.+.++..++.++.|+++||+ |||+.+..+..+..++.++..... +.+.+.+.+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~ 60 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS-----------------------NITVLIIARFL 60 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc-----------------------cHHHHHHHHHH
Confidence 445677888999999999997 999999999888888877776543 56778888999
Q ss_pred HHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Q 007262 154 ISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLL 233 (611)
Q Consensus 154 ~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (611)
.|++.+...+...+++.|.+|+ ++|++..++.+....+|..++|.+.+++.+..+|++.|++.....+++.+.
T Consensus 61 ~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (141)
T TIGR00880 61 QGFGAAFALVAGAALIADIYPP-------EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL 133 (141)
T ss_pred HHHHHHHHHHhHHHHHHHHCCh-------hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 889999999999999999999999999999889999988877666555544
Q ss_pred HHH
Q 007262 234 FFI 236 (611)
Q Consensus 234 ~~~ 236 (611)
...
T Consensus 134 ~~~ 136 (141)
T TIGR00880 134 LAF 136 (141)
T ss_pred Hhh
Confidence 433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.4e-11 Score=127.63 Aligned_cols=175 Identities=14% Similarity=0.091 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccC--chHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLG--RFLTIGLASFCSLL 110 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G--r~~~~~~~~~~~~i 110 (611)
++.+.+..++.....+++.+++|.|+++++|++..+++...+.+.++..++.+++|+++||+.+ |+.......+...+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~ 324 (434)
T PRK11663 245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILL 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHH
Confidence 4444555566666677788899999988899999999999999999999999999999999622 23322222121121
Q ss_pred HHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHH
Q 007262 111 GMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFG 190 (611)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (611)
+........ . .+.....+..+..|++.............|.+|+ +.|++..+
T Consensus 325 ~~~~~~~~~---~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g 376 (434)
T PRK11663 325 SVGSLWLMP---F------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK-------EAAGAATG 376 (434)
T ss_pred HHHHHHHcc---c------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH-------hhHHhHHH
Confidence 211111111 0 0222233333344443333333345567888887 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH
Q 007262 191 WYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFF 235 (611)
Q Consensus 191 ~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (611)
+.+...++|..++|.+.|++.+.+||+..|++.+++.+++.+..+
T Consensus 377 ~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 377 FVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888777666554443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-10 Score=125.51 Aligned_cols=153 Identities=15% Similarity=0.103 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH-H
Q 007262 37 IANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFL-L 115 (611)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~-~ 115 (611)
+...++....++++..+.|.|+++.+|++..+.+++...+.++..++.+++|+++||+ |||+++.++.++..+..++ .
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 322 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence 3344455667788889999999999999999999988888899999999999999997 9999887765543322211 1
Q ss_pred HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHH
Q 007262 116 WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYAT 195 (611)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (611)
.... +. .+...+.+..++.+++.+...+....++.|.+|+ +.|++++++.+..
T Consensus 323 ~~~~--~~------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~-------~~rg~~~g~~~~~ 375 (434)
T PRK15075 323 SWLV--AA------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPA-------EVRTAGFSLAYSL 375 (434)
T ss_pred HHHH--cC------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCC-------CccchheeHHHHH
Confidence 1111 00 0222233444555667777777777899999999 8889999986555
Q ss_pred HH-HHHHHHHHHHHHhhccccch
Q 007262 196 SA-IAVVIALTAIVYIQDHLGWK 217 (611)
Q Consensus 196 ~~-ig~~l~~~~~~~l~~~~gw~ 217 (611)
.. +++.++|.+.+++.+..|++
T Consensus 376 ~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 376 ATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHhhhHHHHHHHHHHhcCCc
Confidence 44 46778999999999988854
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=122.97 Aligned_cols=175 Identities=15% Similarity=0.064 Sum_probs=127.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHH-HHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLT-IGLASFCSLL 110 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~-~~~~~~~~~i 110 (611)
.++..++..++.....+....+.+.|+++.+|.+..+.+++.+...++..++.+++|+++||+ |||+. +........+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~ 294 (399)
T TIGR00893 216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAII 294 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHH
Confidence 355556677777788888888999999999999999999999999999999999999999997 88861 1111111111
Q ss_pred HH---HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 111 GM---FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 111 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
+. .+..+.. .. ..+.........+.+.+.+ ..+...+++.|.+|+ +.|++
T Consensus 295 ~~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~g~ 347 (399)
T TIGR00893 295 AGLVLSLLMFAT--NY-----------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPG-------NIAGL 347 (399)
T ss_pred HHHHHHHHHHHh--cc-----------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcCh-------hHHHH
Confidence 11 1111111 00 0122333333333334444 789999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHHHHH
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLG-WKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~ 234 (611)
.+++.+...++|..++|.+.|++.+..| |+..|++.++..+++.+..
T Consensus 348 ~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 348 TGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888 9999888777666655544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-10 Score=125.40 Aligned_cols=173 Identities=14% Similarity=0.127 Sum_probs=127.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHH-HHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 007262 40 EAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLF-FWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLT 118 (611)
Q Consensus 40 ~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~ 118 (611)
.++.....+....+.++|+.+++|++..+.+++.. ...++..++.+++|+++||+ |||+.+.++.++..++.+.....
T Consensus 231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l 309 (491)
T PRK11010 231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLL 309 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666677888988889999999999875 55678999999999999997 99888777666555544333221
Q ss_pred hhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHH
Q 007262 119 AMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAI 198 (611)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 198 (611)
...+ .+...+.+..++..++.|...+...++..+..++ +.+++.+++.+...++
T Consensus 310 ~~~~-------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~-------~~~~t~~gl~~s~~~l 363 (491)
T PRK11010 310 SITD-------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNK-------SFSATQFALLSALSAV 363 (491)
T ss_pred Hhcc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCcHHHHHHHHHHHHH
Confidence 1000 1333344455565555565667778888888888 6778889999998999
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCc
Q 007262 199 AVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASP 239 (611)
Q Consensus 199 g~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (611)
|..+++.+.|++.+.+||+..|.+.+++.+.++++....++
T Consensus 364 g~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 364 GRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988889999999999999998888887777666655443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.8e-11 Score=125.15 Aligned_cols=159 Identities=19% Similarity=0.216 Sum_probs=128.9
Q ss_pred HHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcC
Q 007262 43 EKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIP 122 (611)
Q Consensus 43 ~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~ 122 (611)
..+.+..+..+.+.|+++ .|++ +.+.....+.++..++.++.|++.||+ |||+.+.++..+..++.++..+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~--- 300 (392)
T PRK12382 228 QGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP--- 300 (392)
T ss_pred HHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc---
Confidence 344555666777888765 4654 355666677778889999999999997 999999988888888776665433
Q ss_pred CCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHH
Q 007262 123 KVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVI 202 (611)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l 202 (611)
+...+++..++.|++.+...+...+.+.|.+|+ ++|++.+++++...++|..+
T Consensus 301 --------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~i 353 (392)
T PRK12382 301 --------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPS-------QVRGTALGGYAAFQDIAYGV 353 (392)
T ss_pred --------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 455667788899999998888888899999998 89999999999999999999
Q ss_pred HHHHHHHhhccccchhhhHHHHHHHHHHHHHHH
Q 007262 203 ALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFF 235 (611)
Q Consensus 203 ~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (611)
+|.+.|++.+..||+..|.+.+.+.+++.++.+
T Consensus 354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988877766665544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-10 Score=122.14 Aligned_cols=175 Identities=10% Similarity=0.060 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH-HHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIG-LASFCSLLG 111 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~-~~~~~~~i~ 111 (611)
++...+..++....+++..++.|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~~ 301 (402)
T TIGR00897 224 VLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGIF 301 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHH
Confidence 455556677778888999999999985 5899999999999999999999999999999997 9888764 233333333
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
.+.+.+..... ..+.+..++..++.|++.+...+. ...+.|. ++ +.|++++++
T Consensus 302 ~~~l~~~~~~~------------------~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~-~~-------~~~g~~~g~ 354 (402)
T TIGR00897 302 TLALYYIPQHF------------------GHSFAVALIIAIALGIFLAGYVPL-AAVFPTL-AP-------KHKGAAMSV 354 (402)
T ss_pred HHHHHHHHHcc------------------CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhh-Cc-------chhHHHHHH
Confidence 33332211000 013455566777788877776553 4555554 44 568999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Q 007262 192 YYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
.+...++|..++|.+.+.+.+.+||...|++.+++.+++.++.++
T Consensus 355 ~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 355 LNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888776666555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=124.69 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=122.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHH
Q 007262 38 ANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWL 117 (611)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~ 117 (611)
....+.....+++..+++.|+.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..+..+....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 323 (405)
T TIGR00891 245 VLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFA 323 (405)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHH
Confidence 333444455556677889999999999999999999999999999999999999997 9999988877654332222211
Q ss_pred hhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHH
Q 007262 118 TAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSA 197 (611)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 197 (611)
.. .+.+.+.+..++.++..++..+..++++.|.+|+ +.|++.+++.+...+
T Consensus 324 ~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~ 374 (405)
T TIGR00891 324 IG----------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPT-------DQRAAGLGFTYQLGN 374 (405)
T ss_pred hC----------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCc-------chhHHHhhHHHHHHH
Confidence 11 1345556666677777777788889999999998 889999999999999
Q ss_pred HHHHHHHHHHHHhhcccc-chhhhHH
Q 007262 198 IAVVIALTAIVYIQDHLG-WKVGFGV 222 (611)
Q Consensus 198 ig~~l~~~~~~~l~~~~g-w~~~f~~ 222 (611)
+|..++|.+.|++.+..| |+..+..
T Consensus 375 ~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 375 LGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHHhccccchhHHh
Confidence 999999999999999888 8766554
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-10 Score=123.62 Aligned_cols=169 Identities=14% Similarity=0.006 Sum_probs=111.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHH-h
Q 007262 40 EAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWL-T 118 (611)
Q Consensus 40 ~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~-~ 118 (611)
..+....+|++.+++|.|+++++|++..+.+...++...+..++.++.|+++||+ |||+.+.++.++..+..+.... .
T Consensus 252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~ 330 (432)
T PRK10406 252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL 330 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344677889999999999999999999999888888888888899999999997 9999887766544333322211 1
Q ss_pred hhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHH
Q 007262 119 AMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAI 198 (611)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 198 (611)
.+. .+....+....+..++.+...+....+.+|.+|+ +.|++++++.+...++
T Consensus 331 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~-------~~r~t~~g~~~~~g~~ 383 (432)
T PRK10406 331 QNV--------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPA-------QVRALGVGLSYAVANA 383 (432)
T ss_pred HcC--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CccchhhhHHHHHHHH
Confidence 100 0122111112222233334445677889999999 9999999998876654
Q ss_pred -HHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Q 007262 199 -AVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 199 -g~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
++...|.+.+.+.....|...+++.++..+++.+..++
T Consensus 384 ~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 384 LFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34458877786644333655665555555555444333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-10 Score=127.03 Aligned_cols=149 Identities=18% Similarity=0.144 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 007262 49 GLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSP 128 (611)
Q Consensus 49 ~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 128 (611)
.+..++|.|+++++|++..+.+++.+...++..++.+++|+++||+ |||+++.++.++..++.++.....
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~--------- 362 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG--------- 362 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc---------
Confidence 4567899999999999999999999999999999999999999997 999998887666555544333211
Q ss_pred CCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007262 129 CNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIV 208 (611)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~ 208 (611)
..+.+.+.+..++.+....+..+..++++.|.+|+ +.|++.+++++...++|+.++|.+.|
T Consensus 363 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~g~~lgp~l~g 423 (496)
T PRK03893 363 ------------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT-------EQRAAGLGFTYNVGALGGALAPILGA 423 (496)
T ss_pred ------------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH-------HHhhcccchhhhhhhHHHHHHHHHHH
Confidence 11333333444444433334456778889999998 89999999999999999999999999
Q ss_pred HhhccccchhhhHHHHHH
Q 007262 209 YIQDHLGWKVGFGVPAIL 226 (611)
Q Consensus 209 ~l~~~~gw~~~f~~~~~~ 226 (611)
++.+.+||+..+.+.+..
T Consensus 424 ~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 424 LIAQRLDLGTALASLSFS 441 (496)
T ss_pred HHhccCChHHHHHHHHHH
Confidence 999999999877654443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.4e-10 Score=120.63 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=122.4
Q ss_pred HHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCC
Q 007262 44 KVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPK 123 (611)
Q Consensus 44 ~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~ 123 (611)
.+.+....+++|.|+++ .|.+..+.+.+.+...++..++.++.|+++||+ |||+++..+..+..++..... .
T Consensus 213 ~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~--~---- 284 (381)
T PRK03633 213 GIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML--S---- 284 (381)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh--h----
Confidence 33444455678888875 699999999999999999999999999999997 999999888777766654332 1
Q ss_pred CCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHH
Q 007262 124 VKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIA 203 (611)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~ 203 (611)
. ...+..+++.|++.+...|...+++.|..|+ ++++...+.++...++|..++
T Consensus 285 -------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lG~~ig 337 (381)
T PRK03633 285 -------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEH-------HELVAMNQALLLSYTVGSLLG 337 (381)
T ss_pred -------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 1 1233456677777777889999999999887 666777777777889999999
Q ss_pred HHHHHHhhccccchhhhHHHHHHHHHHHHHH
Q 007262 204 LTAIVYIQDHLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 204 ~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
|.+.|++.++++|++.|.+.+.+.++..+..
T Consensus 338 p~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 338 PSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988777666554443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.6e-10 Score=119.31 Aligned_cols=170 Identities=14% Similarity=0.002 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 007262 36 IIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLL 115 (611)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~ 115 (611)
..+..++.....++..++++.|+++.+|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+ ++..+..++....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~~l 287 (390)
T PRK03545 210 LYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLLLL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHHHH
Confidence 34444555556666677888899888999999999999999999999999999999997 987654 4444444443333
Q ss_pred H-HhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHH
Q 007262 116 W-LTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYA 194 (611)
Q Consensus 116 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 194 (611)
. ... +.+.+++..++.|++.+...+...+.+.+..| +.|++++++++.
T Consensus 288 ~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~ 336 (390)
T PRK03545 288 LPAAN-----------------------SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP--------DATDVAMALFSG 336 (390)
T ss_pred HHHhc-----------------------hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC--------CcHHHHHHHHHH
Confidence 2 222 45666777888888888777777788777654 356788898888
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhC
Q 007262 195 TSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIAS 238 (611)
Q Consensus 195 ~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 238 (611)
...+|..+||.++|++.+.+|++..|++.+.+.++++++.....
T Consensus 337 ~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 337 IFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 88999999999999999999999999988887777766654433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-09 Score=113.41 Aligned_cols=133 Identities=10% Similarity=0.073 Sum_probs=103.3
Q ss_pred HHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 007262 54 MILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILT 133 (611)
Q Consensus 54 ~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 133 (611)
+..|.++.+| +..-+-|...+|.+.+....+.+-|+.|++ |-|...+++.++..+|..+=.++. .|.+.+
T Consensus 67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~~------- 136 (480)
T KOG2563|consen 67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVPP------- 136 (480)
T ss_pred HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Cccccc-------
Confidence 4457777888 777888999999999999999999999997 999999999999999987766654 565433
Q ss_pred cCCCCCCchhhH--HHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 134 QSCESPTTAQMT--LLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQ 211 (611)
Q Consensus 134 ~~~~~~~~~~~~--~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~ 211 (611)
.++ +...+..+.+...-.+.....-..+-+|++ ++|..+...-.++..+|..++.++.+.+.
T Consensus 137 ---------~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~-------~qra~A~~~~v~~n~LGvavg~llppilV 200 (480)
T KOG2563|consen 137 ---------LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPP-------DQRAIATVLGVMGNPLGVAVGFLLPPILV 200 (480)
T ss_pred ---------cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCc-------chhhhhhhHHHhcchHHHHHHhhccceec
Confidence 344 566677777666666665656667789999 88999888877777777777776666554
Q ss_pred c
Q 007262 212 D 212 (611)
Q Consensus 212 ~ 212 (611)
.
T Consensus 201 ~ 201 (480)
T KOG2563|consen 201 P 201 (480)
T ss_pred C
Confidence 3
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-09 Score=110.46 Aligned_cols=81 Identities=7% Similarity=-0.058 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc--------
Q 007262 142 AQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDH-------- 213 (611)
Q Consensus 142 ~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~-------- 213 (611)
.++..++++.+++|.|.+..++..++++++..++ +++.+.+++......+|..++|++++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~-------~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~ 80 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPI-------ETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQ 80 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCc-------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhh
Confidence 3788899999999999999999999999999998 7788889999999999999999999887732
Q ss_pred --------ccchhhhHHHHHHHHH
Q 007262 214 --------LGWKVGFGVPAILMVL 229 (611)
Q Consensus 214 --------~gw~~~f~~~~~~~~~ 229 (611)
.+|+++|++.+.+.++
T Consensus 81 ~~~~~~~~~~~~~~yl~ia~~~~~ 104 (310)
T TIGR01272 81 VATANAEAAKVHTPYLLLAGALAV 104 (310)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3688888865544333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-10 Score=116.42 Aligned_cols=179 Identities=17% Similarity=0.087 Sum_probs=142.9
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
++++ ++..+..+++...+.|...+|+.+++++..|++.++.+++...|.++..++..++|+++|| +.|+++.....+
T Consensus 209 ~~p~-v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l 285 (394)
T COG2814 209 RRPG-VLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLL 285 (394)
T ss_pred cCch-HHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHH
Confidence 4444 6666778888888999999999999999999999999999999999999999999999998 778888877777
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
..+....+.+.. .+.+...+..++.|+..+........-+++.. + +.++.
T Consensus 286 ~a~~~l~l~~~~----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p-------~~~~~ 335 (394)
T COG2814 286 LALALLALTFTG----------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-P-------DAADL 335 (394)
T ss_pred HHHHHHHHHHhc----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-C-------CchHH
Confidence 777766666543 14455555555666666655555555555522 2 56778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCc
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASP 239 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (611)
+.+++..+.|+|..+|..++|.+.+++|+....++.+.+.++++++.+...+
T Consensus 336 a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 336 AGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999999988888777665544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-10 Score=125.20 Aligned_cols=172 Identities=12% Similarity=0.079 Sum_probs=134.6
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHHHHHHH--H
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSY-LGRFLTIGLASFC--S 108 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~-~Gr~~~~~~~~~~--~ 108 (611)
.++..++..++..+.++...++++.|+++ +|++..+++.+.++..++..++.+++|+++||. .++|+...++..+ .
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 320 (455)
T TIGR00892 242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN 320 (455)
T ss_pred hHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 35555556667777788888899999865 799999999999999999999999999999984 1334434333322 2
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhH
Q 007262 109 LLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188 (611)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (611)
.++.+++.+.. +.+.+++.+++.|++.+...+...+++.|.+|+ +.+++.
T Consensus 321 ~l~~ll~~~~~-----------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~-------~~~g~~ 370 (455)
T TIGR00892 321 GLTHLLCALAG-----------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA-------QRFSSA 370 (455)
T ss_pred HHHHHHHHHhc-----------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH-------HHHhhH
Confidence 33333333322 566778889999999999999999999999998 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-cchhhhHHHHHHHHHHHHHH
Q 007262 189 FGWYYATSAIAVVIALTAIVYIQDHL-GWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 189 ~~~~~~~~~ig~~l~~~~~~~l~~~~-gw~~~f~~~~~~~~~~~~~~ 234 (611)
+++++...++|..++|.++|++.+.. +|+..|++.+++.+++.+..
T Consensus 371 ~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 371 VGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence 99999999999999999999998877 59999988887666555433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.7e-10 Score=116.79 Aligned_cols=182 Identities=14% Similarity=0.071 Sum_probs=137.9
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLL 110 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 110 (611)
+..|.+++.++..-.++-++..+++.|+++++++++.+++.....+.+...+..+++|+|+||+ |.+|+..+..+.+++
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~ 296 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMAL 296 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHH
Confidence 3467777777777777788889999999999999999999999999999999999999999997 888888888888888
Q ss_pred HHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHH
Q 007262 111 GMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFG 190 (611)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (611)
+..+..+...... ...+....+...+.+++..|.-......++...+|+ +-+.+.+
T Consensus 297 ~~~~l~~~~~~~~----------------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~--------~~G~v~G 352 (417)
T COG2223 297 AAALLSLFLTGFG----------------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK--------ETGAVTG 352 (417)
T ss_pred HHHHHHccccccc----------------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh--------hhhHHHH
Confidence 8777765320000 012344444444445555555555556667677764 4577788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHHHHHHHh
Q 007262 191 WYYATSAIAVVIALTAIVYIQDHLG-WKVGFGVPAILMVLSLLLFFIA 237 (611)
Q Consensus 191 ~~~~~~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~ 237 (611)
+.....++|++.-|...+...+..| +...|++.....+++..+.+..
T Consensus 353 ~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 353 IVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999888877 8888888877777776655443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.9e-10 Score=115.29 Aligned_cols=162 Identities=11% Similarity=0.034 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--hCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKD--YHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSL 109 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 109 (611)
..++..+..++...+--++..|.+.|+.+. +|+++.+.+...+.+..+..++.++++++.||+ |+||++.++.++..
T Consensus 141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~ 219 (310)
T TIGR01272 141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAV 219 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence 344444444444445556778899999854 799999999999999999999999999999997 99999988887777
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
++.++..... +.. ...+.++.|++.+..+|...+...+.+|++ ..+ +.
T Consensus 220 ~~~~l~~~~~-----------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~------~~~--as 267 (310)
T TIGR01272 220 LLSIGAALTH-----------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRH------TSQ--GS 267 (310)
T ss_pred HHHHHHHHcC-----------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hhh--hH
Confidence 7665554322 112 223556889999999999999999988872 222 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHH
Q 007262 190 GWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILM 227 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~ 227 (611)
++. ....+|+.+.|.+.|.+.|..|.+.+|++..++.
T Consensus 268 ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 268 GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY 304 (310)
T ss_pred HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 343 4567899999999999999999888887655443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=7e-10 Score=116.42 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHhhhhH-HHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLV-TNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~-~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
++..+...++.....++.. .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+.++..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 4444445555566665565 6778888877999999999999999999999999999999997 9999988877666666
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
..+..+.. . +.+.+++..++.|++.+...+...+++.|.+|+ +.|++..+.
T Consensus 291 ~~~~~~~~---------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~ 341 (365)
T TIGR00900 291 ILVVGLTP---------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA-------ELLGRVFGA 341 (365)
T ss_pred HHHHHhhc---------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHH
Confidence 65555432 0 256677888999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 007262 192 YYATSAIAVVIALTAIVYIQDHLG 215 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~~~g 215 (611)
++...++|..++|.+.|++.+.+|
T Consensus 342 ~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 342 QFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999988654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=119.11 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 007262 52 TNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNI 131 (611)
Q Consensus 52 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 131 (611)
.+...+..+++|++..+.++......++..++.+++|+++||+ |||+.+.+++++..++.++..+...... .
T Consensus 304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------ 375 (481)
T TIGR00879 304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV-T------ 375 (481)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc-C------
Confidence 3334445567899998889998899999999999999999997 9999999988887777766653210000 0
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 132 LTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQ 211 (611)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~ 211 (611)
......+...+....++.+....+..+....++.|.+|+ +.|++..++.+...++|++++|.+.+++.
T Consensus 376 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~~~~~~~lg~~i~~~~~~~~~ 443 (481)
T TIGR00879 376 -----GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPL-------SLRPKGISIAVAANWLANFIVGFLFPTML 443 (481)
T ss_pred -----CcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000122222222222222233446677788999998 89999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHH
Q 007262 212 DHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 212 ~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
++.+|++.|++.+.+.+++.++.+.
T Consensus 444 ~~~~~~~~f~~~~~~~~~~~i~~~~ 468 (481)
T TIGR00879 444 ESIGVGGVFIFFGGLNVLGLIFVYF 468 (481)
T ss_pred HhcCccceehhHHHHHHHHHHHHhe
Confidence 9889999998877776666555443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-09 Score=118.12 Aligned_cols=184 Identities=15% Similarity=0.139 Sum_probs=146.2
Q ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCch--HHHHHHHHH
Q 007262 30 LITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRF--LTIGLASFC 107 (611)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~--~~~~~~~~~ 107 (611)
.|.+..-++..++-+-+...+......|.++++|++..+...+..+..+.+.+++++.|++.||+ |.| +++++++++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence 34455545566777777788888999999999999999999999999999999999999999997 988 888887776
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
+.+..+...+ ...+. ..+..+.+.+++.-++.|+..|+.++..-++.++..|+ ++.+.
T Consensus 359 ~~~i~~~g~~-G~~~~--------------~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~-------g~e~e 416 (477)
T PF11700_consen 359 WIIIPLYGLF-GFWPS--------------FFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP-------GREAE 416 (477)
T ss_pred HHHHHHHHHH-Hhhhc--------------ccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-------chhhH
Confidence 6332222111 00010 01122566788888899999999999999999999999 77799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHHHHHHH
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLG-WKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~ 236 (611)
+++++....-..+.+||++.|.+.+..| .|..+....++.++++++++.
T Consensus 417 fFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 417 FFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998876 888888777777777766644
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.4e-10 Score=107.86 Aligned_cols=164 Identities=16% Similarity=0.118 Sum_probs=133.1
Q ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007262 30 LITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSL 109 (611)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 109 (611)
...+|.+....++-.++.+=.++..+.++++.+|+|+..++.+.+..++.+.+..++.|.++|++ ||+...+.+..+..
T Consensus 263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~t 341 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILT 341 (459)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHH
Confidence 45577778888888888888888899999999999999999999999999999999999999997 99877666655433
Q ss_pred -HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhH
Q 007262 110 -LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188 (611)
Q Consensus 110 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (611)
++-..+.++ ++.-+.+..++|+...+.....+++++...|+ ++.+++
T Consensus 342 l~~H~~l~Ft-------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE-------~qLGTa 389 (459)
T KOG4686|consen 342 LLGHSGLFFT-------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPE-------EQLGTA 389 (459)
T ss_pred HHHhhhHHhh-------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCH-------HHhcch
Confidence 333333332 33357778889999888888889999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc---chhhhHHHHHH
Q 007262 189 FGWYYATSAIAVVIALTAIVYIQDHLG---WKVGFGVPAIL 226 (611)
Q Consensus 189 ~~~~~~~~~ig~~l~~~~~~~l~~~~g---w~~~f~~~~~~ 226 (611)
++..+...|+|-.+.|++.|.+.|+-| |--.|++....
T Consensus 390 ygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~ 430 (459)
T KOG4686|consen 390 YGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL 430 (459)
T ss_pred HHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence 999999999999999999999998644 44455544433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.1e-10 Score=121.07 Aligned_cols=177 Identities=17% Similarity=0.200 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH-
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLL- 110 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i- 110 (611)
.++...+..++.....|++.+++|.|+++..|++..+++++...+.++..++.+++|+++||+ |+++....+..+..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence 355555566666677788999999999999999999999999999999999999999999997 654322233322221
Q ss_pred --HHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhH
Q 007262 111 --GMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188 (611)
Q Consensus 111 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (611)
+...+.... . .+.+......++.|++..+..........|.+|+ +.|+++
T Consensus 331 ~~~~~~~~~~~---~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~ 382 (438)
T TIGR00712 331 TIAVIVYWMNP---A------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTA 382 (438)
T ss_pred HHHHHHHHhcC---C------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh-------hheeee
Confidence 111111111 0 1223333344445544333323333467788998 889999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHh
Q 007262 189 FGWYYATSAIAV-VIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIA 237 (611)
Q Consensus 189 ~~~~~~~~~ig~-~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (611)
.++.+...++|+ .++|.+.|++.+..||...|++.....+++.+..+..
T Consensus 383 ~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 383 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred hhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 999988888764 6899999999999999999887776665555554443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-09 Score=117.75 Aligned_cols=205 Identities=17% Similarity=0.273 Sum_probs=148.7
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLL 110 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 110 (611)
+.++.++....+......++.......+.+.++++.++.|++.+.+-++..+...+-.+.+-|. =|-|.+-+|.+++.+
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL 174 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence 4444434333333333347888888899999999999999999999999999999999999995 788899999999999
Q ss_pred HHHHHHHhhhcC-------------CCCC------CCCCccccCCC---------CCCchhh-HHHHHHHHHHHHhcccc
Q 007262 111 GMFLLWLTAMIP-------------KVKP------SPCNILTQSCE---------SPTTAQM-TLLISSFCFISIGAGGI 161 (611)
Q Consensus 111 ~~~~~~~~~~~~-------------~~~~------~~~~~~~~~~~---------~~~~~~~-~~l~~~~~~~glg~g~~ 161 (611)
+.++.++-..+. .-.+ -.|+.-++.++ ..++..+ .+++++.++.|+|....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 998887542110 0000 00111111111 1111123 37788899999999999
Q ss_pred chhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc------------------c-cchhhhHH
Q 007262 162 RPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDH------------------L-GWKVGFGV 222 (611)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~------------------~-gw~~~f~~ 222 (611)
++.-.+|+=|...+ +.-...+++.+....+|+++|.++++++... . .|+..|++
T Consensus 255 ~tlGisYiDDnvk~-------~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi 327 (735)
T KOG3626|consen 255 FTLGISYIDDNVKK-------KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI 327 (735)
T ss_pred ccCCCccccccccc-------cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence 99999999888877 6667789999999999999999998886531 1 38888888
Q ss_pred HHHHHHHHHHHHHHhCccccc
Q 007262 223 PAILMVLSLLLFFIASPLYVK 243 (611)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~ 243 (611)
++.+.++..+.+++.++.+++
T Consensus 328 ~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 328 CGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred HHHHHHHHHHHHHhCcccCcc
Confidence 888888887777777665543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-08 Score=105.34 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhCC---Chh----hhhHHHHHHHHHHHHHHHHHHHHhhhccC-chHHHHHHHHHHHHHHHHHHHhhhcC
Q 007262 51 VTNMILYLMKDYHL---GVA----KGTNVLFFWTAATNFMPILGAFLSDSYLG-RFLTIGLASFCSLLGMFLLWLTAMIP 122 (611)
Q Consensus 51 ~~~~~~yl~~~~g~---~~~----~~~~~~~~~~~~~~~~~~~~G~laD~~~G-r~~~~~~~~~~~~i~~~~~~~~~~~~ 122 (611)
....|.|+++..+- ++. -.+...++..+..++..|+-|.++|+. | ||+.+.+..++-.++.+.++++.
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~--- 110 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIP--- 110 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhC---
Confidence 35688898887654 333 335566677777888889999999997 6 55566666666666666666644
Q ss_pred CCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHH
Q 007262 123 KVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVI 202 (611)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l 202 (611)
+..+.+...+...+..++.........++..|..++ ++.++..+.-+....+|+.+
T Consensus 111 -----------------~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k-------~~~~riS~lg~~~gylgs~i 166 (438)
T COG2270 111 -----------------PGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTK-------DNMGRISGLGWALGYLGSVI 166 (438)
T ss_pred -----------------CCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCc-------cccCcccccccccccccchH
Confidence 112556666777788899999999999999999998 33344444444444556555
Q ss_pred HHHH
Q 007262 203 ALTA 206 (611)
Q Consensus 203 ~~~~ 206 (611)
.-++
T Consensus 167 ~li~ 170 (438)
T COG2270 167 LLIF 170 (438)
T ss_pred HHHH
Confidence 4443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-10 Score=121.59 Aligned_cols=162 Identities=12% Similarity=0.080 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
.++.+++..++..++.+......+.|++..+| +..+.+++.++..++..++.++.|+++||+ |||+++.++.++..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 300 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLG 300 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 34445556666666666555555556555555 556677788888889999999999999997 9999999998888877
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
.+...+.. .+.+.+++..++.|++.+...+...++++|..+..+.+...+.++..+++
T Consensus 301 ~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 358 (437)
T TIGR00792 301 YLIFFFAG----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSV 358 (437)
T ss_pred HHHHHHcc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHH
Confidence 76665421 14455667778889999999999999999998753322233567889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccch
Q 007262 192 YYATSAIAVVIALTAIVYIQDHLGWK 217 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~~~gw~ 217 (611)
+++...+|..+++.+.|++.+..||.
T Consensus 359 ~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 359 RTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999998876664
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-09 Score=114.36 Aligned_cols=166 Identities=12% Similarity=0.032 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
.++..++..++....+.+..++.+.|++ +.|++..+.+.+.++..++..+..++.|++.||+ |+|+.+.++.++..++
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~ 283 (382)
T PRK11128 206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVR 283 (382)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 3444455555555666667788888985 5899999999999988888889999999999997 9999999988888887
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
.++...++ +.+.+++..++.|++.+...+....++.+. ++ +++++..+.
T Consensus 284 ~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~ 332 (382)
T PRK11128 284 WGLMGSTT-----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PG-------SEVIRLQAL 332 (382)
T ss_pred HHHHHhhh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CH-------hhhHHHHHH
Confidence 76665544 677778889999999998888888888776 44 445777887
Q ss_pred HH-HHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHH
Q 007262 192 YY-ATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSL 231 (611)
Q Consensus 192 ~~-~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~ 231 (611)
+. ....+|..++|.++|++.|.+|+. .|+..+++.+.++
T Consensus 333 ~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~ 372 (382)
T PRK11128 333 YSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence 65 445678899999999999998874 5555555544443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.6e-10 Score=116.26 Aligned_cols=161 Identities=15% Similarity=0.211 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH--HHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASF--CSL 109 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~--~~~ 109 (611)
.++.+.+..++.....+++..+.+.|+++.+|++..+.+.+.+.+.++..++.++.|+++||..+||+....... ...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 355556666667777778888999999999999999999999999999999999999999985344433222111 111
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
++........ ..+.....+..++.|+..++..+....+..|.+|+ +.|+++.
T Consensus 297 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~ 348 (379)
T TIGR00881 297 VSLLVYWLNP---------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPK-------KAAGTAA 348 (379)
T ss_pred HHHHHHhcCc---------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc-------chhHHHH
Confidence 2211111100 01333444555666666666666777888999998 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhh
Q 007262 190 GWYYATSAIAVVIALTAIVYIQDHLGWKVGF 220 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f 220 (611)
++++...++|..++|.+.|++.+.+||+..|
T Consensus 349 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 349 GFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 9999999999999999999999999998764
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.3e-08 Score=103.90 Aligned_cols=160 Identities=15% Similarity=0.149 Sum_probs=114.3
Q ss_pred HHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhc--cC--chHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 007262 53 NMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSY--LG--RFLTIGLASFCSLLGMFLLWLTAMIPKVKPSP 128 (611)
Q Consensus 53 ~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~--~G--r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 128 (611)
....|+++++|+++++.....+...+- ...-++.|.++|-+ +| ||+-+.++.++..++.+.+++.+ .
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~---~----- 81 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP---A----- 81 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc---c-----
Confidence 355688999999999887665544432 34567789999986 23 55555666666655555555432 1
Q ss_pred CCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007262 129 CNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIV 208 (611)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~ 208 (611)
...+.....+..++..+|........-+++.|...++. +.|+...+..+....+|..++..+.|
T Consensus 82 -----------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p-----~~~g~lqS~~~~~~~~G~lv~~~l~G 145 (433)
T PF03092_consen 82 -----------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREP-----ESRGDLQSFVWGVRSVGSLVGSLLSG 145 (433)
T ss_pred -----------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC-----chhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 01134445566677889999999999999999987622 33788888888899999999999999
Q ss_pred HhhccccchhhhHHHHHHHHHHHHHHHHh
Q 007262 209 YIQDHLGWKVGFGVPAILMVLSLLLFFIA 237 (611)
Q Consensus 209 ~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (611)
.+.+..+++..|.+.+++.++..+..+..
T Consensus 146 ~l~~~~~~~~~f~i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 146 PLLDSFGPQGVFLISAALPLLMLIVALFL 174 (433)
T ss_pred hhhhcCCCeEEehHHHHHHHHHHHHHHHh
Confidence 99999999999988876655554443333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.5e-08 Score=103.66 Aligned_cols=358 Identities=18% Similarity=0.148 Sum_probs=203.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhCCChhh-hhHHHHHH----HHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 38 ANEAFEKVASYGLVTNMILYLMKDYHLGVAK-GTNVLFFW----TAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~-~~~~~~~~----~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
+...+.....+-...+...+.....+.+..+ .+...... .+...+.++.-|.++||+ |||..+.+..+...+..
T Consensus 28 fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~ 106 (463)
T KOG2816|consen 28 FLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPA 106 (463)
T ss_pred HHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhH
Confidence 3333333333334456666666555443332 23333333 456778889999999997 99999999888877776
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHH--HhccccchhhhhhhhcccCCCCCCCcchhhhhHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFIS--IGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFG 190 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--lg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (611)
+...+.. ++.+ + +.+ -+.+.......++++|...+ ++|...++
T Consensus 107 ~~~~~~~------------------------~~~~-~---~~~l~g~~~~~~s~~~a~vadis~~-------~~R~~~~g 151 (463)
T KOG2816|consen 107 LCLLFQG------------------------YWFF-L---LLGLSGGFSAIFSVGFAYVADISSE-------EERSSSIG 151 (463)
T ss_pred HHHHHHH------------------------HHHh-h---hcccccchhhhhhhhhhheeeccch-------hHHHHHHH
Confidence 6665422 2222 2 333 24456667888999999998 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCc-hhHHHHHHHHHHHhhcccCC
Q 007262 191 WYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSS-LLTGFAQVAVVAYKNRKLAL 269 (611)
Q Consensus 191 ~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 269 (611)
+.+.....+..++|.+++++.+..|.-..|.+..+..++..+..+...|+-.+++.+.. +. ++. .
T Consensus 152 ll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~-------------~~~-~ 217 (463)
T KOG2816|consen 152 LLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATL-------------REL-T 217 (463)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccc-------------ccc-C
Confidence 99998999999999999999999999999999988888877766665554333222110 00 000 0
Q ss_pred CCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHH-HHHHhHhHHh
Q 007262 270 PPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLP-LWSTGIMMSI 348 (611)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~ 348 (611)
+.. ....+. .+++....+ .+++|..+..+. .+.....-+.
T Consensus 218 ~~~--------------~~~~~~-----------------------~~~~~~~~~--~~~~r~~l~l~l~~~~~~~~~~~ 258 (463)
T KOG2816|consen 218 PGS--------------LDSSHV-----------------------ADAFQSLTK--VGPDRLLLLLLLVAFLSSLPEAG 258 (463)
T ss_pred CCc--------------ccchhh-----------------------hhhhhhhcc--cCCCccchHHHHHHHHHHHHHhc
Confidence 000 000000 000000000 011122211111 1111111110
Q ss_pred hhcCCchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHH
Q 007262 349 NISQNSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGM 428 (611)
Q Consensus 349 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~ 428 (611)
- .+-..+++ .....+ .-....+.+.........+. ..+..|+..+.. ...+.+.+|+..-.+..
T Consensus 259 ~-~~~~~~~y----l~~~f~-w~~~~~s~~~~~~~~~~~i~----~l~~~~~l~~~l------~~~~~i~lGl~~~~~~~ 322 (463)
T KOG2816|consen 259 G-ASDVLLLY----LKAKFG-WNKKEFSDLLSLVSILGIIS----QLLLLPLLSSIL------GEKRLISLGLLSEFLQL 322 (463)
T ss_pred C-ceeEEEEE----EeeecC-cCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH------hhhhHhhHHHHHHHHHH
Confidence 0 01011111 111121 00011121222222222221 222333333332 22235788888888888
Q ss_pred HHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHH
Q 007262 429 VVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVAN 508 (611)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~ 508 (611)
++.++.. ..|.+. ...+.........|...+++...+.++.+|++.++......+.+
T Consensus 323 ~~~af~~----------------------~~w~~~-~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~ 379 (463)
T KOG2816|consen 323 LLFAFAT----------------------ETWMMF-AAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSG 379 (463)
T ss_pred HHHHHhc----------------------cchhhh-HHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhh
Confidence 8888774 223222 33344556677889999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcc
Q 007262 509 LLASAIVSAVDDITS 523 (611)
Q Consensus 509 ~l~~~i~~~i~~~~~ 523 (611)
.+++.+.+.+...+.
T Consensus 380 ~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 380 VVSPALYGNIFALTL 394 (463)
T ss_pred hhhHHHHHHHHHHHH
Confidence 999999888876664
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-09 Score=114.46 Aligned_cols=166 Identities=8% Similarity=0.035 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHh---CCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 007262 37 IANEAFEKVASYGLVTNMILYLMKDY---HLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMF 113 (611)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~yl~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~ 113 (611)
+...++....+.....+.+.|+++.+ +.+....+.+.++..+...++.+..|++.||+ |||+.+.++.++..++..
T Consensus 221 ~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~~ 299 (396)
T TIGR00882 221 VLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRII 299 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHH
Confidence 33334444444445556788887765 45556678888888888888999999999997 999999998888888776
Q ss_pred HHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH-H
Q 007262 114 LLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW-Y 192 (611)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~ 192 (611)
+...+. +.+.+++..++.|++.+........+..+..++ +.+++..+. +
T Consensus 300 ~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~at~~~~~~ 349 (396)
T TIGR00882 300 GSSFAT-----------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDV-------RLSATIYLIGF 349 (396)
T ss_pred HHHhcC-----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------ceEEEeehHHH
Confidence 655433 456667778888888766666666667777776 666666665 5
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Q 007262 193 YATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLL 233 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (611)
+....+|..+++.+.|++.+.+||+..|.+.+++.++..+.
T Consensus 350 ~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 350 QFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999998877766555443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.8e-09 Score=111.48 Aligned_cols=154 Identities=14% Similarity=0.199 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhCCChhhhhHHHHHHH-HHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 007262 52 TNMILYLMKDYHLGVAKGTNVLFFWT-AATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCN 130 (611)
Q Consensus 52 ~~~~~yl~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 130 (611)
.+.+.|+.+++|++..+.+++..... .+..++.+++|++.||+ |||+.+.++.++..++.+.+.+....+.
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~~------- 301 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTPK------- 301 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcCC-------
Confidence 34556777889999999999886654 46889999999999997 9999887777666555443322110111
Q ss_pred ccccCCCCCCchhhHHHHHHH----HHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 007262 131 ILTQSCESPTTAQMTLLISSF----CFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTA 206 (611)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~~----~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~ 206 (611)
+.+.+++.. +..|++.+...+....++.+.+|. +. .+.+....++|..+++.+
T Consensus 302 ------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~~l~~~~~~~~ 358 (402)
T PRK11902 302 ------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSA-------TQ----YALLSALASVGRVYVGPT 358 (402)
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-------HH----HHHHHHHHHHHHHHHHHH
Confidence 334444443 345566667777777777777776 33 344444456777666678
Q ss_pred HHHhhccccchhhhHHHHHHHHHHHHHHHH
Q 007262 207 IVYIQDHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 207 ~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
+|++.+.+||+..|.+.+++.+++.++.+.
T Consensus 359 ~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 359 SGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888777766555433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.2e-09 Score=113.06 Aligned_cols=147 Identities=16% Similarity=0.105 Sum_probs=107.9
Q ss_pred HHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 007262 45 VASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKV 124 (611)
Q Consensus 45 ~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~ 124 (611)
...+.+..+++.|+++ .|.+..+.+.+.+...++..++.++.|+++||+ |||+++..+.++..++.++..... .
T Consensus 245 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~---~- 318 (426)
T PRK12307 245 GANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP---Q- 318 (426)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc---c-
Confidence 3444567788888876 699999999999999999999999999999997 999999888776655544333211 0
Q ss_pred CCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHH
Q 007262 125 KPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIAL 204 (611)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~ 204 (611)
.....+....+..+.+..+..+..+.++.|.+|+ +.|++++++.+....+|+.++|
T Consensus 319 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~~~~~gp 374 (426)
T PRK12307 319 -----------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPL-------EVRGLGTGLIYNLAATSGTFNS 374 (426)
T ss_pred -----------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcH-------HHHhhhhhHHHHHHhHHHHHHH
Confidence 0111121222222233334456677888999999 8999999999999999999999
Q ss_pred HHHHHhhccccchhhhH
Q 007262 205 TAIVYIQDHLGWKVGFG 221 (611)
Q Consensus 205 ~~~~~l~~~~gw~~~f~ 221 (611)
.+.|++.+.+|+....+
T Consensus 375 ~~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 375 MAATWLGITMGLGAALT 391 (426)
T ss_pred HHHHHHHHcccHHHHHH
Confidence 99999999888665433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.8e-09 Score=115.03 Aligned_cols=156 Identities=11% Similarity=0.001 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
+...+...++..+.+.......+.|++..+|.+..+.+++.....++..++.++.|+++||+ |||+++..+.++..++.
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~ 341 (471)
T PRK10504 263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVS 341 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence 44445566666666655556778888888999999999998888888888889999999997 99999998888777766
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
.+..+.. . ..+.+.+.+..++.|++.+...+....+..+..|+ +.++..+++.
T Consensus 342 ~~~~~~~---~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~ 394 (471)
T PRK10504 342 LLFMLVA---L-----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD-------NLASSGNSLL 394 (471)
T ss_pred HHHHhcc---c-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-------HhccchHHHH
Confidence 5555422 0 01233344556678888888888999999999998 8899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc
Q 007262 193 YATSAIAVVIALTAIVYIQDHLGW 216 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~~~gw 216 (611)
+....+|..+++.++|.+.+..++
T Consensus 395 ~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 395 SMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999888776554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-09 Score=115.71 Aligned_cols=164 Identities=12% Similarity=-0.027 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHH-HHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMK-DYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLT-IGLASFCSL 109 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~-~~~~~~~~~ 109 (611)
.++...+..++....++++.+++|.|+++ ..|.+..+++.+.....++..++.+++|+++||+ +||+. +....++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~ 321 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence 35555667777888889999999999987 3477888999999999999999999999999997 87664 333333333
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
++..+ .... + +....+++..+.++|.....+.......|.+|+ +.|+.++
T Consensus 322 ~~~~~-~~~~--~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~a~ 371 (412)
T TIGR02332 322 AGWLL-ASAT--D--------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISL-------QARAIAI 371 (412)
T ss_pred HHHHH-HHhc--C--------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccch-------HHHHHHH
Confidence 33222 1111 0 111122222333344434344444555677777 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc-chhhhHHHHHH
Q 007262 190 GWYYATSAIAVVIALTAIVYIQDHLG-WKVGFGVPAIL 226 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~ 226 (611)
++.+...++|+.++|.+.|.+.+..| |++.|++.++.
T Consensus 372 g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 372 AVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 99999999999999999999999775 99988766554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-08 Score=108.85 Aligned_cols=171 Identities=9% Similarity=-0.094 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
++...+...+.....+...+..|.|+.+++|+++.+.++......++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~ 295 (406)
T PRK15402 217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGL 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 44444444444555556666778888889999999999888878888889999999999997 99999999888887777
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
.+........ ..+...++++.++.|+|.+...+......... ++ +.|++..+.+
T Consensus 296 ~~~~~~~~~~------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~-------~~~g~~~~~~ 349 (406)
T PRK15402 296 LLAALATVIS------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SD-------VSKGTVSAAM 349 (406)
T ss_pred HHHHHHHHcc------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cc-------ccccHHHHHH
Confidence 7665432110 11345567778889999888777666655332 33 5678889999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHH
Q 007262 193 YATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLS 230 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 230 (611)
+....+|..+++.+.+++.+..++....+...+..++.
T Consensus 350 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 350 GMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 98899999999999999988877665555544444433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.3e-09 Score=110.68 Aligned_cols=175 Identities=17% Similarity=0.031 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHH-HHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTA-ATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
++..+...++.........++.+.|+++ .|++..+.+++...... ...++.+++|++.||+ |+|+++.++.++..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 3334445555556666667778888875 79999999999887764 5667789999999997 9999998877665333
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
.+.......... ..+...++....+.+++.+...+...+...+..+++ +.+++.++.
T Consensus 288 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~g~~~~~ 344 (390)
T TIGR02718 288 ALLWFAQAAFWL-----------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDG------DQAGTDVTA 344 (390)
T ss_pred HHHHHHHHHccc-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc------cchHHHHHH
Confidence 222221110000 002233344445566677777777778877776541 677899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHH
Q 007262 192 YYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLL 232 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 232 (611)
.+...++|..++|.++|++.+..||+..|.+.+.+.+++.+
T Consensus 345 ~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 345 VQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887766555543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.9e-09 Score=112.20 Aligned_cols=155 Identities=12% Similarity=0.112 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
++.+.+...+....++++.+++|.|+++ .|++..+.+.+.+.+.++..++.++.|+++||+.+||+.+.++.++..++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 277 (355)
T TIGR00896 199 AWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGL 277 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 4444445556677778888899999875 799999999999999999999999999999997356667777777777776
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
+.+.+.. +.... ...++.|++.|...|...+.+.+..+++ +.++...++.
T Consensus 278 ~~~~~~~-----------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~~~g~~~~~~ 327 (355)
T TIGR00896 278 CGLLFAP-----------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQA------AQAAALSAMA 327 (355)
T ss_pred HHHHHhh-----------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCH------HHHHHHHHHH
Confidence 6665432 11111 1346789999999998888777665541 5667788888
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc-chh
Q 007262 193 YATSAIAVVIALTAIVYIQDHLG-WKV 218 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~~~g-w~~ 218 (611)
+...++|..++|.+.|++.+++| |.+
T Consensus 328 ~~~~~~~~~~gp~~~G~l~~~~g~~~~ 354 (355)
T TIGR00896 328 QSIGYLLAALGPLFVGVLHDISGNWLM 354 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 88888999999999999998765 543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-09 Score=112.80 Aligned_cols=146 Identities=14% Similarity=0.075 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
.+.+....++....++.+..+++ ++.+++|.+..+.+.+.+...++..++.+++|+++||+ |||+.+....+....+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 329 (398)
T TIGR00895 252 TVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFAV 329 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHH
Confidence 33344455566667777777777 66778999999999999999999999999999999997 98855444333333322
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
++..... +...+++..++.|++.+...+...+++.|.+|+ +.|++++++.
T Consensus 330 ~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~ 379 (398)
T TIGR00895 330 LVGSTLF-----------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT-------AIRATGVGWA 379 (398)
T ss_pred HHHHHhh-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH-------HHHHHHHHHH
Confidence 2222111 345567777889999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007262 193 YATSAIAVVIALTAIVYI 210 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l 210 (611)
+....+|..++|.+.|++
T Consensus 380 ~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 380 IGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHhHHhc
Confidence 999999999999998875
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8e-09 Score=110.13 Aligned_cols=170 Identities=12% Similarity=0.067 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 007262 34 PFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMF 113 (611)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~ 113 (611)
+......++.....+...+++++|+++.+|++..+.+.+.+...++..++.++.|+++||+ |+|+.+.++..+..++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~ 280 (382)
T PRK10091 202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALL 280 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHH
Confidence 3333333444445555667788898888999999999999999999999999999999997 999999888887777765
Q ss_pred HHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHH
Q 007262 114 LLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYY 193 (611)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (611)
+..... .+.+...+..++.++|.++..+.......+..++. +.++... .+
T Consensus 281 ~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~ 330 (382)
T PRK10091 281 MLFFFG----------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGG------ELLGAAG--GQ 330 (382)
T ss_pred HHHHHH----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc------hHHHHHH--HH
Confidence 544322 02333444455556665555544444333433320 3444432 34
Q ss_pred HHHHHHHHHHHHHHHHhhcc-ccchhhhHHHHHHHHHHHHHH
Q 007262 194 ATSAIAVVIALTAIVYIQDH-LGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 194 ~~~~ig~~l~~~~~~~l~~~-~gw~~~f~~~~~~~~~~~~~~ 234 (611)
....+|..++|.++|++.+. .+|+..+.+.+.+.++.+..+
T Consensus 331 ~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 331 IAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 56689999999999999885 689999988876665554443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-11 Score=135.47 Aligned_cols=195 Identities=18% Similarity=0.263 Sum_probs=3.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 007262 37 IANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLW 116 (611)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~ 116 (611)
.+..++. ...++.......-+++.++++.+++|++.+.+.++..+..++..++++|. -|-|-+-+|.+++.+|.++++
T Consensus 9 ~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 9 CLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHh
Confidence 3344445 66677777777788999999999999999999999999999999999984 777888889999999998887
Q ss_pred HhhhcCCCCCCCCCcc---------------c------------c----CCCCCCchhhHHHHHHHHHHHHhccccchhh
Q 007262 117 LTAMIPKVKPSPCNIL---------------T------------Q----SCESPTTAQMTLLISSFCFISIGAGGIRPCS 165 (611)
Q Consensus 117 ~~~~~~~~~~~~~~~~---------------~------------~----~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~ 165 (611)
+ |....++|+.- . + +........+..++++.++.|+|....++..
T Consensus 87 l----Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG 162 (539)
T PF03137_consen 87 L----PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLG 162 (539)
T ss_dssp ---------------------------------------------------------------------SSS--------
T ss_pred c----cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccce
Confidence 4 43333333100 0 0 0011111135678899999999999999999
Q ss_pred hhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc---------------------c-cchhhhHHH
Q 007262 166 IAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDH---------------------L-GWKVGFGVP 223 (611)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~---------------------~-gw~~~f~~~ 223 (611)
.+|+=|..++ +.-...+++++....+|+++|.++++.+.+. . .|...|++.
T Consensus 163 ~tYiDDnv~~-------~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~ 235 (539)
T PF03137_consen 163 ITYIDDNVSK-------KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLIC 235 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeecccccc-------ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHH
Confidence 9999999998 6677788999999999999999888765421 1 377788777
Q ss_pred HHHHHHHHHHHHHhCcccccc
Q 007262 224 AILMVLSLLLFFIASPLYVKL 244 (611)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~ 244 (611)
+++.++..+.++..+++.++.
T Consensus 236 g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 236 GILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHcCCccCCCc
Confidence 777766666666666655443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-08 Score=109.85 Aligned_cols=155 Identities=12% Similarity=0.087 Sum_probs=109.8
Q ss_pred HHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccC
Q 007262 56 LYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQS 135 (611)
Q Consensus 56 ~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (611)
+++.+++|.+.....+......++..++.+++|+++||+ |||+++..+.++..++.+++......+.
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~------------ 361 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA------------ 361 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc------------
Confidence 334456898887777777777888899999999999997 9999999999988888777654320000
Q ss_pred CCCCCchhhHHHHHHHHHHHHhccc-cchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH------
Q 007262 136 CESPTTAQMTLLISSFCFISIGAGG-IRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIV------ 208 (611)
Q Consensus 136 ~~~~~~~~~~~l~~~~~~~glg~g~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~------ 208 (611)
... ....+.++.+.+.+. ..|..+.+++|.+|+ +.|++++++.+...++|..+++.+.+
T Consensus 362 ------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~ 427 (479)
T PRK10077 362 ------PGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPN-------AIRGKALAIAVAAQWIANYFVSWTFPMMDKNS 427 (479)
T ss_pred ------ccH-HHHHHHHHHHHHHhccccchhHHHhHhhCCh-------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 011 222233344444443 347788999999998 89999999998888888887765554
Q ss_pred HhhccccchhhhHHHHHHHHHHHHHHHHh
Q 007262 209 YIQDHLGWKVGFGVPAILMVLSLLLFFIA 237 (611)
Q Consensus 209 ~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (611)
++.+..+|+..|++.++..+++.++.+..
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
T PRK10077 428 WLVAHFHNGFSYWIYGCMGVLAALFMWKF 456 (479)
T ss_pred chhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence 44467788888888776655555544433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=112.10 Aligned_cols=168 Identities=13% Similarity=0.071 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 007262 36 IIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLL 115 (611)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~ 115 (611)
++...++..+....+...+|.+.++.+|.+....|++.+++.++..++.++.+++.+|+ ++++++..+.+++.++.+.+
T Consensus 223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~l 301 (524)
T PF05977_consen 223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLL 301 (524)
T ss_pred HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHH
Confidence 33334444444445556688888999999999999999999999999999999999996 99999988888888888777
Q ss_pred HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHH
Q 007262 116 WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYAT 195 (611)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (611)
+++. +.+..++..++.|++.........+.+.+..|+ +.||+++++++..
T Consensus 302 al~~-----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~-------~~~GRv~si~~~~ 351 (524)
T PF05977_consen 302 ALSP-----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPD-------WVRGRVFSIYQMV 351 (524)
T ss_pred hcch-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHhHHHHHHHHH
Confidence 7755 677778888899999999888889999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHH
Q 007262 196 SAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 196 ~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
...+..+|.++.|.+.+.+|.+..+.++++..+++.++.
T Consensus 352 ~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 352 FFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988887776655554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.9e-09 Score=115.20 Aligned_cols=173 Identities=12% Similarity=0.080 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchH-----H--HHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFL-----T--IGLAS 105 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~-----~--~~~~~ 105 (611)
.|.+.+..++.....+.+.++++.|+.+++|++..+++.+.+++.++..++.+++|+++||+ |||+ . ..+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~ 332 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ 332 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence 34444444444555566777899999999999999999999999999999999999999997 8652 2 22222
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhh
Q 007262 106 FCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVL 185 (611)
Q Consensus 106 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r 185 (611)
++..++.++..... +.....+..++.+++.+...+...+++.+.. + +.|
T Consensus 333 ~l~~i~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~-------~~~ 381 (476)
T PLN00028 333 TLGGVFCIWLGRAN-----------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVS-R-------RSL 381 (476)
T ss_pred HHHHHHHHHhcccc-----------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccC-h-------hhc
Confidence 22222222222111 3333444455556665555555556655543 3 567
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhC
Q 007262 186 ESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIAS 238 (611)
Q Consensus 186 ~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 238 (611)
+...++.+...++|+.++|.+.+ ..+..+|+..|++.+++.+++.++.++.+
T Consensus 382 g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 382 GVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 88888887777788887776654 22345699999888777777666555543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-08 Score=108.29 Aligned_cols=184 Identities=14% Similarity=0.104 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
.|.+.+..++....+.++..++|.|+++.+. .........+..+...+..+++|+++||+ |++|++.++.++..++.
T Consensus 254 ~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~~ 330 (462)
T PRK15034 254 LWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIFS 330 (462)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHHH
Confidence 5666777777666666777789999888663 33333334445677889999999999997 99999999888777766
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCC--------------C
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKD--------------N 178 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~--------------~ 178 (611)
....+. +|. .+..+++.+.+..+...++.|.-......++.+.+|+.. .
T Consensus 331 ~~~~l~--lp~---------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~ 393 (462)
T PRK15034 331 ALLFLT--LPG---------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQ 393 (462)
T ss_pred HHHHHH--hcc---------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHh
Confidence 443322 121 111255666666666556666666666777777776300 0
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHHHHHHH
Q 007262 179 PNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLG-WKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 179 ~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~ 236 (611)
++.+++-+.+.++......+|+++.|.+.|...+..| +...|+...+..+++..+.+.
T Consensus 394 ~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 394 REAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 0111256677888888889999999988887776644 788888777776666665544
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.2e-09 Score=113.04 Aligned_cols=176 Identities=16% Similarity=0.021 Sum_probs=119.6
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHH--------HH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLT--------IG 102 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~--------~~ 102 (611)
+.++.+.+..++....++.+.+++|.|+++.+|++..+.++..++..++..++.+++|+++||+ ++|+. +.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 339 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIF 339 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHH
Confidence 4466677788888888899999999999999999999999999999999999999999999996 54421 11
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcc
Q 007262 103 LASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNE 182 (611)
Q Consensus 103 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~ 182 (611)
.+..+...+..+..... .. .+....++...+.+.+.++..+.......|..|
T Consensus 340 ~~~~~~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------- 391 (465)
T TIGR00894 340 NGIGGLGPGIFAYALPY-LS-------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-------- 391 (465)
T ss_pred HHHHHHHHHHHHHHHHH-cC-------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh--------
Confidence 11111111111111111 00 022333344444455555555554444445443
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc---cchhhhHHHHHHHHHHHHHHH
Q 007262 183 RVLESFFGWYYATSAIAVVIALTAIVYIQDHL---GWKVGFGVPAILMVLSLLLFF 235 (611)
Q Consensus 183 ~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~---gw~~~f~~~~~~~~~~~~~~~ 235 (611)
+.++...++.+...++|+.++|.+.|++.+.. +|+..|.+.+...+++.++..
T Consensus 392 ~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 392 RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 56899999999999999999999999887643 488888887777666655543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-08 Score=106.96 Aligned_cols=161 Identities=11% Similarity=0.143 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
++...+...+.....+....+.+.|+++++|.++.+.+.+.+...++..++.++.|++.||+ |||+.+.++..+..++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~ 286 (385)
T TIGR00710 208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSA 286 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 33334444445556667777788899999999999999999999999999999999999997 99999988887777776
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
.++......+ ......++...++.|+|.+...+.......|..|+ .+++..+.+
T Consensus 287 ~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~g~~~~~~ 340 (385)
T TIGR00710 287 VLLEITAILG------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH--------VAGTASALF 340 (385)
T ss_pred HHHHHHHHhc------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc--------cchHHHHHH
Confidence 6655432000 01234455567778899999889888888887653 467788887
Q ss_pred HHHHHH-HHHHHHHHHHHhhccccchhhhH
Q 007262 193 YATSAI-AVVIALTAIVYIQDHLGWKVGFG 221 (611)
Q Consensus 193 ~~~~~i-g~~l~~~~~~~l~~~~gw~~~f~ 221 (611)
+..... |...++ +.+.+.+..+|...+.
T Consensus 341 ~~~~~~~g~i~~~-~~~~~~~~~~~~~~~~ 369 (385)
T TIGR00710 341 GTLRLVLGAIVGY-LVSLIHGNTAWPMSLS 369 (385)
T ss_pred HHHHHHHHHHHHH-HHHhccccChHHHHHH
Confidence 776654 555555 4555555545544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.4e-09 Score=112.92 Aligned_cols=154 Identities=11% Similarity=0.036 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
++...+..++..+.+++...++|.|+++.+|+++.++++......++..++.+++|++.||+ |||+.+.++.++..++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~~ 335 (485)
T TIGR00711 257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVGF 335 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHH
Confidence 44445566667777888888999999999999999999999999999999999999999997 99999998888888777
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
.+..+.. -+ ..+.+.+....++.|+|.+...+.......+..|+ +.|+.+.+.+
T Consensus 336 ~~~~~~~-~~------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~ 389 (485)
T TIGR00711 336 YWRAFTF-TP------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP-------HKIARGSSLS 389 (485)
T ss_pred HHHhccC-CC------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHhHHHHHH
Confidence 6655211 01 11345566667889999998888888888888888 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 007262 193 YATSAIAVVIALTAIVYIQDH 213 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~~ 213 (611)
+...++|+.+++.+.+.+.++
T Consensus 390 ~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 390 NFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=109.81 Aligned_cols=172 Identities=13% Similarity=0.066 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHH--HhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMK--DYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLL 110 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 110 (611)
++...+..++..+.......+.+.|+.. +.+.+....+.+.....+......++.|++.||+ ++|+.+..+.++..+
T Consensus 208 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~ 286 (395)
T PRK10054 208 LLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVI 286 (395)
T ss_pred ehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHH
Confidence 3444445555555555555566677654 3455566667777777777777788899999997 999999888887777
Q ss_pred HHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHH
Q 007262 111 GMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFG 190 (611)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (611)
+.....++. .+.+.+.++..+.++|.+...|...+++.+..|+ +.|++.++
T Consensus 287 ~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~-------~~~~~~~~ 337 (395)
T PRK10054 287 GLVGFIFSG----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPP-------GMKASYFS 337 (395)
T ss_pred HHHHHHHcc----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCc-------ccceehHh
Confidence 776665432 1455566778899999998889999999999998 66777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH
Q 007262 191 WYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFF 235 (611)
Q Consensus 191 ~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (611)
... ...+|..++|.++|++.|+.|....|++.+....++.++..
T Consensus 338 ~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 338 AQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 543 56689999999999999999988888776555554444433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=107.63 Aligned_cols=145 Identities=10% Similarity=0.035 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHH-HHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWT-AATNFMPILGAFLSDSYLGRFLTIGLASFCSLL 110 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 110 (611)
.++.+++..++..++++...++.+.|+++ +|++..+.+.+.++.. ++..++.+++|+++||+ |||+.+.++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 35555666667788888888999999987 9999999998887766 56789999999999997 999998888887776
Q ss_pred HHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHH
Q 007262 111 GMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFG 190 (611)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (611)
+..+..+..+... +++ .+..+.+.+....++.+++.+...+...+++.|.+|+ +.|++.++
T Consensus 288 ~~~~~~~~~~~~~----------~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g 348 (356)
T TIGR00901 288 TNAGFVWLASNGH----------HDG--ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP-------KFGATQMA 348 (356)
T ss_pred HHHHHHHHHhcCc----------ccc--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-------CccHHHHH
Confidence 6554443210000 000 0001345677778888999999999999999999999 99999999
Q ss_pred HHHHHHH
Q 007262 191 WYYATSA 197 (611)
Q Consensus 191 ~~~~~~~ 197 (611)
+++...+
T Consensus 349 ~~~~~~~ 355 (356)
T TIGR00901 349 LLSSLSA 355 (356)
T ss_pred HHHHHHh
Confidence 8776554
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-08 Score=111.93 Aligned_cols=166 Identities=18% Similarity=0.132 Sum_probs=108.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhCCChhhhhH------------HHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 40 EAFEKVASYGLVTNMILYLMKDYHLGVAKGTN------------VLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 40 ~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
.++..+.+|++..+.|.+++ +.|++..+++. ...+..++..++.+++++++||+ |||++++++.++
T Consensus 297 ~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~~ 374 (502)
T TIGR00887 297 WFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFFI 374 (502)
T ss_pred HHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHH
Confidence 34456677888888888885 57887553321 12233445566888999999997 999999888877
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
..++..+..+... +. . +...+....+...++..+..+..+.+.+|.+|. +.|++
T Consensus 375 ~~~~~~~l~~~~~-~~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~-------~~R~~ 428 (502)
T TIGR00887 375 LTVLFFVLGFAYN-HL-----------------S-THGFLAIYVLAQFFANFGPNATTFIVPGEVFPT-------RYRST 428 (502)
T ss_pred HHHHHHHHHHHHH-hc-----------------c-hhHHHHHHHHHHHHHhcCCCchhhhhhhccCch-------hHHHH
Confidence 7766655554320 00 0 011111111112222333456677888999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc----------ccchhhhHHHHHHHHHHHHH
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDH----------LGWKVGFGVPAILMVLSLLL 233 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~----------~gw~~~f~~~~~~~~~~~~~ 233 (611)
+.++.+....+|.+++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 429 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 429 AHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998873 33455666665555544443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-08 Score=108.24 Aligned_cols=164 Identities=10% Similarity=0.056 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH-HHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 007262 37 IANEAFEKVASYGLVTNMILYL-MKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLL 115 (611)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~yl-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~ 115 (611)
.+..++.....++...+.+.|+ ++.+|+++.+++.....+.++..++.+++|++.||+ |||+++..+.++..++..+.
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~ 342 (438)
T PRK10133 264 VLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLIS 342 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666777888886 567899999999999999999999999999999997 99999988877766655444
Q ss_pred HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHH
Q 007262 116 WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYAT 195 (611)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (611)
.+.. +. ..+....+.|+|.+..+|...+...+.+|++ .+.+.++.. .
T Consensus 343 ~~~~-----------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~--------~~~as~l~~-~ 389 (438)
T PRK10133 343 AFAG-----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD--------TKYGSSFIV-M 389 (438)
T ss_pred HHcC-----------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh--------hccchhHHh-H
Confidence 4322 11 1245567899999999999999999998762 123334333 2
Q ss_pred HHHHHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHHHHH
Q 007262 196 SAIAVVIALTAIVYIQDHLG-WKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 196 ~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~ 234 (611)
..+|+.++|.+.|.+.+..| -+..|+++.+..+......
T Consensus 390 ~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~~ 429 (438)
T PRK10133 390 TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA 429 (438)
T ss_pred HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 34678888889999999887 7888887776655554443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-08 Score=111.22 Aligned_cols=152 Identities=11% Similarity=-0.027 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
+.......++.....++...+++.|+++.+|.++.+++.......++..++.+++|++.||+ |||+.+..+.++..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~~ 339 (495)
T PRK14995 261 ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALSF 339 (495)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence 34445566666677778888899999999999999999999999999999999999999997 99999988888887777
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
+++.... . ..+.+...+..++.|+|.|...+.....+.+..|+ ++++.+.+.+
T Consensus 340 ~~l~~~~-~-------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~-------~~~g~~~~~~ 392 (495)
T PRK14995 340 YGLAMTD-F-------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPP-------EKAAAAGAIE 392 (495)
T ss_pred HHHHHhc-C-------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH-------HhcchHHHHH
Confidence 6654322 0 01344456677889999999999899999999998 8899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 007262 193 YATSAIAVVIALTAIVYIQD 212 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~ 212 (611)
+...++|+.+|+.+.+.+.+
T Consensus 393 ~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 393 TMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888765
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.8e-09 Score=112.29 Aligned_cols=162 Identities=13% Similarity=0.123 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
++...+..++...+++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..++.
T Consensus 230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~~ 308 (448)
T PRK09848 230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCGY 308 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 44455566666666666666677788888888766655555554667788999999999997 99999999998888877
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
++..+.. ..+.+.+++..++.|+|.+...+...++.+|..|..+.+.+.+.++..++.+
T Consensus 309 ~~~~~~~---------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~ 367 (448)
T PRK09848 309 LLFFWVS---------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLF 367 (448)
T ss_pred HHHHHcC---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHH
Confidence 6665422 1145566677788999999999999999999998744333335568888899
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc
Q 007262 193 YATSAIAVVIALTAIVYIQDHLGW 216 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~~~gw 216 (611)
++...+|..+++.+.+.+.+..||
T Consensus 368 ~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 368 SFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999998887665554
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-08 Score=109.96 Aligned_cols=164 Identities=16% Similarity=0.124 Sum_probs=134.9
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLL 110 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 110 (611)
|.+..+++..++..++.....+..+.|.+..+|.+ ...+.+..+..++..++.++.++++||+ |||+++..+.++..+
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 34555666777777777777778888888888877 5667788888999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHH
Q 007262 111 GMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFG 190 (611)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (611)
+.++..+.. ..+.+.+++..++.|++.+...+...++++|..+..+.+.+++..+..++
T Consensus 303 ~~~~~~~~~---------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s 361 (428)
T PF13347_consen 303 GFLLLFFLG---------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS 361 (428)
T ss_pred HHHHHHHHH---------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence 888777643 12678888999999999999999999999999997555545466788888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccch
Q 007262 191 WYYATSAIAVVIALTAIVYIQDHLGWK 217 (611)
Q Consensus 191 ~~~~~~~ig~~l~~~~~~~l~~~~gw~ 217 (611)
.+.....+|..+++.+.+.+.+..|+.
T Consensus 362 ~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 362 VNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 888899999999999988877655544
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.7e-08 Score=102.33 Aligned_cols=165 Identities=13% Similarity=0.061 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
++..+...++.....++..++.++++.+++|++..+.+.+...+.++..++.++.|++.||. +|+ .+..+..+..++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~~~ 295 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHHHH
Confidence 34433444454555566667765555567899999999999999999999999999999994 554 4334434433333
Q ss_pred HHH-HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 113 FLL-WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 113 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
+++ .... +.+.+.+..++.|++.+...+...+++.+..|+ + +++..+.
T Consensus 296 ~~l~~~~~-----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~ 344 (394)
T PRK10213 296 LVLTLWGS-----------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-------Q-AEKAGSI 344 (394)
T ss_pred HHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-------c-HHHHHHH
Confidence 333 2222 455667778889999999999999899888875 2 3344555
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHH
Q 007262 192 YYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLS 230 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 230 (611)
++...++|..+|+.++|++.+..|++..+..++++.++.
T Consensus 345 ~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 345 QVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 666778999999999999999999988888776554443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-08 Score=121.13 Aligned_cols=163 Identities=14% Similarity=0.047 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChh-hhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVA-KGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
++..++..++.....+.+..+++.|+++.+|++.. +.+++.++..++..++.+++|+++||+ ++++++.++.++..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~ 312 (1146)
T PRK08633 234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALS 312 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHH
Confidence 44444444455555566778899999999999999 999999999999999999999999997 9999988888877777
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
.++..+.. +.+.+++..++.|++.++..+...+++.+.+|+ +.|++++++
T Consensus 313 ~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~rg~~~~~ 362 (1146)
T PRK08633 313 LFLLPTAP-----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPE-------KELGKVLAA 362 (1146)
T ss_pred HHHHHHhh-----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCc-------cchhhhhHH
Confidence 76666543 456677778889999999999999999999999 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cccchhhhHHHHHH
Q 007262 192 YYATSAIAVVIALTAIVYIQD-HLGWKVGFGVPAIL 226 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~-~~gw~~~f~~~~~~ 226 (611)
.++..++|.++++.+++.+.. .+++...|++.+.+
T Consensus 363 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 363 NNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999998888877665543 23455555554433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-08 Score=105.14 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 007262 49 GLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSP 128 (611)
Q Consensus 49 ~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 128 (611)
....++|.|+++..+ ++.+.+++.+...++...+....+++.||.++.++.+..+.++..++..+...+.
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--------- 295 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--------- 295 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence 344567888877655 6788888887777766655555566665533666777777777777766665543
Q ss_pred CCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007262 129 CNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIV 208 (611)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~ 208 (611)
+...+.+..++.++|.+...|...+++.+..|+ +.|++.++.++...++|..++|.+.|
T Consensus 296 --------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~ig~~l~G 354 (400)
T PRK11646 296 --------------NLQQLFTLICLFYIGSIIAEPARETLSASLADA-------RARGSYMGFSRLGLALGGAIGYIGGG 354 (400)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCc-------ccchhhhhHHHHHHHHHHHhcccchH
Confidence 445556667778888888889999999999999 89999999999999999999999999
Q ss_pred Hhhccc---c-chhhhHHHHHHHHHHH
Q 007262 209 YIQDHL---G-WKVGFGVPAILMVLSL 231 (611)
Q Consensus 209 ~l~~~~---g-w~~~f~~~~~~~~~~~ 231 (611)
++.+.. + ....+++...+.+++.
T Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (400)
T PRK11646 355 WLFDLGKALNQPELPWMMLGIIGLITL 381 (400)
T ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 998764 2 2445554444444443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.9e-08 Score=119.81 Aligned_cols=184 Identities=9% Similarity=-0.063 Sum_probs=130.7
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
.++.+++..++..+..+++.+++|.|+++.+|.+..+.+++.+.+.++..++.++.|+++|+. ++++.+..+.++..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF 304 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence 455555566666677777888999999999999999999999999999999999999999886 7666666555555544
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
.+.+.+.. .....++. ..-.-.......+.+.++++.++.|++.+...+...+++.+.+|+ +.|+++++.
T Consensus 305 ~~~l~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~G~v~g~ 374 (1140)
T PRK06814 305 GLDLAFAS-SSVPAEPA--QLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANP-------AHRARVIAA 374 (1140)
T ss_pred HHHHHhcc-cccccccc--cccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCc-------ccceeeeHH
Confidence 44333320 00000000 000000000002455677778889999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cccchhhhHHHHHH
Q 007262 192 YYATSAIAVVIALTAIVYIQD-HLGWKVGFGVPAIL 226 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~-~~gw~~~f~~~~~~ 226 (611)
.+...++|..+++++.+.+.+ ..++...|++.+.+
T Consensus 375 ~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 375 NNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999999888874 45666666554443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.7e-08 Score=101.42 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
.+..-++..++-+=.--++.+....|-..++|++..+...+.....+..++++++.|+|.||+ |-|+++.+++++..+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence 333334445554444456777888999999999999999999999999999999999999997 9999999998877665
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
.+...+.. ....+.+.-++.|+..|+.++.+-++.++..|+ ++-+.++++
T Consensus 332 ~~~~~~~~-----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~-------~k~~~fFgl 381 (438)
T COG2270 332 ALYLIFLE-----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPK-------GKEGRFFGL 381 (438)
T ss_pred HHHHHHcc-----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCC-------ccccceeeh
Confidence 54444322 223355556789999999999999999999999 666778999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHHHHH
Q 007262 192 YYATSAIAVVIALTAIVYIQDHLG-WKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~ 234 (611)
|....-.+..++|...+.+.+.+| -|..+.....+.+++++++
T Consensus 382 yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 382 YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence 999999999999999998887654 6666665555555555544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-06 Score=89.36 Aligned_cols=151 Identities=13% Similarity=0.133 Sum_probs=104.3
Q ss_pred HHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCC
Q 007262 59 MKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCES 138 (611)
Q Consensus 59 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (611)
-+++|++..|.+.+..+..+...+..++.|.++||+ |||+.-++.+++..++.+.- ..+
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k-~~~------------------- 119 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTK-HSS------------------- 119 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHH-hcc-------------------
Confidence 357999999999999999999999999999999997 99999888888877765432 222
Q ss_pred CCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHH-HHHHHHHHHHHHHHHHhhcccc--
Q 007262 139 PTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYY-ATSAIAVVIALTAIVYIQDHLG-- 215 (611)
Q Consensus 139 ~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~l~~~~~~~l~~~~g-- 215 (611)
++..++++|++.|++......+--+.......+.+-++ +..+.-++... ....+-.+++..++-++.+..+
T Consensus 120 ----~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~--~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g 193 (354)
T PF05631_consen 120 ----NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ--EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFG 193 (354)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCC
Confidence 68889999999999999998888776544333211111 33333343322 2222334444445555566554
Q ss_pred chhhhHHHHHHHHHHHHHHHH
Q 007262 216 WKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 216 w~~~f~~~~~~~~~~~~~~~~ 236 (611)
-..+|.....+.+++.++...
T Consensus 194 ~vaPF~~a~~~l~~~~~~I~~ 214 (354)
T PF05631_consen 194 PVAPFDAAIVLLAVAAVLILK 214 (354)
T ss_pred CcchHHHHHHHHHHHHHHHHh
Confidence 477888887776666555443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-07 Score=98.81 Aligned_cols=143 Identities=8% Similarity=0.032 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 007262 37 IANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLW 116 (611)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~ 116 (611)
++...+.....+....+.+.++.+++|++..+.+.+.....++..++.+++|++.||+ |||+++.++..+..+..+...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~ 278 (377)
T PRK11102 200 MLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIWLV 278 (377)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556666777888888999999999999999999999999999999997 999999888776544332222
Q ss_pred HhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHH-
Q 007262 117 LTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYAT- 195 (611)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~- 195 (611)
.....+ .+.+.+.++..+.+.+.+...+.....+.|..| +.+++..+..+..
T Consensus 279 ~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~ 331 (377)
T PRK11102 279 VSALLD-------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP--------HMAGTASSLAGTLR 331 (377)
T ss_pred HHHHHh-------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc--------ccchHHHHHHHHHH
Confidence 211000 123334444444555555556666666666654 3456666665443
Q ss_pred HHHHHHHHHHHH
Q 007262 196 SAIAVVIALTAI 207 (611)
Q Consensus 196 ~~ig~~l~~~~~ 207 (611)
..+|..+++.+.
T Consensus 332 ~~~g~~~g~~~~ 343 (377)
T PRK11102 332 FGIGAIVGALLS 343 (377)
T ss_pred HHHHHHHHHHHH
Confidence 346666666543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=106.02 Aligned_cols=141 Identities=17% Similarity=0.217 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhCCC-hhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 007262 36 IIANEAFEKVASYGLVTNMILYLMKDYHLG-VAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFL 114 (611)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~ 114 (611)
++...++..+.++....+++.|+++++|++ ..+.+.+.++..+...++.++.|+++||+ |+|+...+......++.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 289 (352)
T PF07690_consen 211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALG 289 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHH
Confidence 344555555667778889999999999999 78999999999999999999999999997 9888877777766666655
Q ss_pred HHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHH
Q 007262 115 LWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYA 194 (611)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 194 (611)
+.+... ..+....+...++.|++.+...+....++.|.+|+ +.|+++.+..+.
T Consensus 290 ~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~ 342 (352)
T PF07690_consen 290 LLLLPF--------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPP-------EYRGTAFGLFNS 342 (352)
T ss_dssp HCCSHH--------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT-------CHHHHHHHHHHH
T ss_pred HHHHHH--------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHH
Confidence 543320 11445566677889999999999999999999999 999999999999
Q ss_pred HHHHHHHHHH
Q 007262 195 TSAIAVVIAL 204 (611)
Q Consensus 195 ~~~ig~~l~~ 204 (611)
..++|..++|
T Consensus 343 ~~~~~~~igP 352 (352)
T PF07690_consen 343 IGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHCC
Confidence 9999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-07 Score=99.34 Aligned_cols=156 Identities=10% Similarity=-0.050 Sum_probs=115.8
Q ss_pred HHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 007262 45 VASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKV 124 (611)
Q Consensus 45 ~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~ 124 (611)
.........++.|+++.+|.++.+.|.+.+...++..++.++.+++.||. ++++++..+.. ..+..+...+..
T Consensus 219 ~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~----- 291 (393)
T PRK11195 219 GAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQH----- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHh-----
Confidence 33444555667788889999999999999999999999999999999996 98888877753 333333333322
Q ss_pred CCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcch-hhhhHHHHHHHHHHHHHHHH
Q 007262 125 KPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNER-VLESFFGWYYATSAIAVVIA 203 (611)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~ig~~l~ 203 (611)
+.+...+..++.|++.+...+...+.+.+..|+ + .++++.+..+...++|..++
T Consensus 292 ------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~-------~~~~g~~~a~~~~~~~~~~~~~ 346 (393)
T PRK11195 292 ------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHV-------LVGAGHSIAVQNFNENLAMLLM 346 (393)
T ss_pred ------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcc-------cccchhHHHHHhHHHHHHHHHH
Confidence 445556667788999998888888888776444 3 37899999999999999999
Q ss_pred HHHHHHhhccccchhhhHHHHHHHHHHHHH
Q 007262 204 LTAIVYIQDHLGWKVGFGVPAILMVLSLLL 233 (611)
Q Consensus 204 ~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (611)
..+.+.+ +..|-+..+.+.....++.+.+
T Consensus 347 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 347 LGLYSLL-VKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence 9888855 5567777776655554444443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-07 Score=98.62 Aligned_cols=166 Identities=14% Similarity=-0.038 Sum_probs=112.0
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCch---HHHHH-HHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRF---LTIGL-ASF 106 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~---~~~~~-~~~ 106 (611)
+..|.+....++....+|++.+|+|.|+++ .|++.. .+....+..+... +..++++||. .|| +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 345777778888899999999999999965 678764 5555555554444 4457888885 543 33222 333
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhh
Q 007262 107 CSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLE 186 (611)
Q Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (611)
+..++.....++. +....++...+.+++.....+..+++.+|.+|+ +.|+
T Consensus 266 ~~a~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~rg 315 (368)
T TIGR00903 266 LIAAFFLALAFEL-----------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK-------ELHG 315 (368)
T ss_pred HHHHHHHHHHHcc-----------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch-------hhcC
Confidence 3333332223221 222334445566677777778888999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHH
Q 007262 187 SFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 187 ~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
++.++.+...++|+..+|.+.+.+.. +.+..|.+.+...+++.+..
T Consensus 316 t~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 316 KAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887763 55666666655555544443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.6e-08 Score=106.11 Aligned_cols=133 Identities=14% Similarity=0.068 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHH
Q 007262 72 VLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSF 151 (611)
Q Consensus 72 ~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (611)
......+...++.++++++.||+ |||+++.++.++..++.++..+.. . ...+...+..
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~---~------------------~~~~~~~~~~ 417 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVP---V------------------DLYFLRTALA 417 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcC---C------------------CchHHHHHHH
Confidence 33445566778889999999997 999999998888777776665432 1 0123344445
Q ss_pred HHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHH
Q 007262 152 CFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSL 231 (611)
Q Consensus 152 ~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~ 231 (611)
++.+++.++..+..+.+.+|.+|+ +.|++++++.+....+|+.++|.+.+ +. ..++..++++.+.+.+++.
T Consensus 418 ~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~ 488 (505)
T TIGR00898 418 VLGKFGITSAFQMVYLYTAELYPT-------VVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAG 488 (505)
T ss_pred HHHHHHHHHHHHHHHHHhcccccH-------HHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHH
Confidence 566677777788899999999999 99999999999999999999999888 43 3456666766665555554
Q ss_pred HHHH
Q 007262 232 LLFF 235 (611)
Q Consensus 232 ~~~~ 235 (611)
++.+
T Consensus 489 ~~~~ 492 (505)
T TIGR00898 489 ILTL 492 (505)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.6e-08 Score=105.72 Aligned_cols=166 Identities=16% Similarity=0.062 Sum_probs=118.8
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLL 110 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 110 (611)
|.++.+++..++..+..+...++.+.|.+..++ +....+.+.++..++..++.++.++++||+ |||+++.++.++..+
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 445555666666666666665655545444333 455566676766788889999999999997 999999988877666
Q ss_pred HHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHH
Q 007262 111 GMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFG 190 (611)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (611)
+.+...+....+ ..+.+.+++.-++.|++.+...+...++++|..+..+.+.++|..+..++
T Consensus 309 ~~~~~~~~~~~~------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s 370 (473)
T PRK10429 309 SCGVLLLMGLAA------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS 370 (473)
T ss_pred HHHHHHHHhccC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence 655544321001 12455666677788999999999999999999886433444456677788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Q 007262 191 WYYATSAIAVVIALTAIVYIQDHLGW 216 (611)
Q Consensus 191 ~~~~~~~ig~~l~~~~~~~l~~~~gw 216 (611)
...+..-+|..+++.+.|++.+..|+
T Consensus 371 ~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 371 VQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888899999999999988776655
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.3e-07 Score=97.87 Aligned_cols=71 Identities=10% Similarity=0.036 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhh
Q 007262 48 YGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTA 119 (611)
Q Consensus 48 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~ 119 (611)
+....+.+.|+++++|++..+.+.+.+...++..++.++.|++.||+ |||+.+.++.++..++.+...+..
T Consensus 220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~ 290 (392)
T PRK10473 220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSP 290 (392)
T ss_pred HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567788889999999999999999999999999999999997 999999999888888777666543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.9e-07 Score=92.74 Aligned_cols=165 Identities=15% Similarity=0.179 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
-|.+.+---+.+..+|.++.|+|.++.+ .|+|..++|++++...+......+..-++++|...+|+.....++++.+|.
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 3444444456788999999999999874 799999999999999999999999999999987678888888888899998
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
+.+.+.+ . +...+. .+++|+|.|+.+|....++.+..+++ ++-++..+..
T Consensus 289 ~G~~~~P---~-------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a------~~Aa~LSgma 338 (395)
T COG2807 289 VGLLLAP---G-------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDA------AIAAALSGMA 338 (395)
T ss_pred HHHHHhh---h-------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCCh------HHHHHHHHHh
Confidence 8777644 1 222222 48899999999999999999988873 5555566666
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc-chhhhHHHHHHHH
Q 007262 193 YATSAIAVVIALTAIVYIQDHLG-WKVGFGVPAILMV 228 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~~~ 228 (611)
+-...+=...+|++.|++-|..| |+..+..-+...+
T Consensus 339 Qg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i 375 (395)
T COG2807 339 QGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL 375 (395)
T ss_pred hhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence 66666777789999999998764 8877665544433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=6e-07 Score=96.23 Aligned_cols=149 Identities=11% Similarity=0.049 Sum_probs=106.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 007262 42 FEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMI 121 (611)
Q Consensus 42 ~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~ 121 (611)
+....++...++.|.|++ ++|++..+.+.......++..++.++++++.||+ |+|+.+....+...++.+.+.+....
T Consensus 214 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (401)
T PRK11043 214 ACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLL 291 (401)
T ss_pred HHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666677788775 4899999999888878888889999999999997 99988776666655554443322201
Q ss_pred CCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHH
Q 007262 122 PKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVV 201 (611)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 201 (611)
+ ..+...+++...+.+++.+...|...+...+..| +.++++.++++.....++.
T Consensus 292 ~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~~~~ 345 (401)
T PRK11043 292 S------------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP--------QATGKAAALQNTLQLGLCF 345 (401)
T ss_pred c------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc--------ccChHHHHHHHHHHHHHHH
Confidence 1 0134445556677888889988988888777765 3578889998887777888
Q ss_pred HHHHHHHHhhccccchh
Q 007262 202 IALTAIVYIQDHLGWKV 218 (611)
Q Consensus 202 l~~~~~~~l~~~~gw~~ 218 (611)
.++.+.+.+.+......
T Consensus 346 ~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 346 LASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHccCCChhHH
Confidence 88888888876543333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.9e-07 Score=96.71 Aligned_cols=182 Identities=14% Similarity=0.073 Sum_probs=132.9
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
++++.+++ ++..++.....-...++...|+++.-|.+....+.+.++..++-.+.-...+++-.|+ |-|+++.++.+.
T Consensus 205 k~~~~~~F-ll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~ 282 (400)
T PF03825_consen 205 KNPRFLVF-LLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVA 282 (400)
T ss_pred cCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 44444443 3345555666666678888998876557777778777777888888999999999997 999999999998
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
..+=..+.+..+. |. .........+..+.|+..|....+...++.+..|+ +.|++
T Consensus 283 ~~vR~~l~a~~~~-~~-----------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~-------~~~at 337 (400)
T PF03825_consen 283 YAVRWLLYAYFSD-PW-----------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP-------ELRAT 337 (400)
T ss_pred HHHHHHHHHHhcC-Cc-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc-------cchHH
Confidence 8887777776520 00 00112233445679999999999999999999999 89999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhccccch------hhhHHHHHHHHHHHHHHHH
Q 007262 188 FFGWYYAT-SAIAVVIALTAIVYIQDHLGWK------VGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 188 ~~~~~~~~-~~ig~~l~~~~~~~l~~~~gw~------~~f~~~~~~~~~~~~~~~~ 236 (611)
+.+++... ..+|..++..++|++.|.+|-+ ..+.+++.+.++..++++.
T Consensus 338 ~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 338 AQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99998875 4699999999999999987644 3444455444444444433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-07 Score=102.14 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=95.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHH
Q 007262 68 KGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLL 147 (611)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (611)
..+.+.....+...++.++.++++||+ |||+.+.++.++..++.....+.. ..+.+.+
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~ 322 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSALIFFIP---------------------PSNVWLI 322 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhC---------------------cchHHHH
Confidence 334455556677778889999999997 999999888776654433332211 1256667
Q ss_pred HHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 007262 148 ISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWK 217 (611)
Q Consensus 148 ~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~ 217 (611)
++..++.|++.+...+...++++|..+..+.+.+++..+..++.+.+...+|..+++.++|.+.+..|+.
T Consensus 323 ~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 323 FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7778889999999999999999999985333334355677788888899999999999999988776663
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.1e-07 Score=95.79 Aligned_cols=185 Identities=13% Similarity=0.088 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
.+...+.+.++..+.-.-.+.+-...+-++-|++..++.+++........+..+++.++-||+ |||++++++..++.+.
T Consensus 270 ~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~~ 348 (485)
T KOG0569|consen 270 PLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAVA 348 (485)
T ss_pred HHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHH
Confidence 344444455554443333333344445567899999999999999999999999999999997 9999999999988888
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhH---HHHHHHHHHHHhcc-ccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMT---LLISSFCFISIGAG-GIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~glg~g-~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
.+++..+..+.. ....+ ..+++.++..+..+ +..|..+-+.+|.+|+ +.|..
T Consensus 349 ~~~~~~~~~l~~-----------------~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~-------~~R~a 404 (485)
T KOG0569|consen 349 LLLMSIALFLSN-----------------SFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQ-------SARSA 404 (485)
T ss_pred HHHHHHHHHHHH-----------------HhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCc-------cchHH
Confidence 877765431111 00011 12333333332222 3468888999999999 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCcccc
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYV 242 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 242 (611)
++++.+....+..++-......+.+..|- ..|++.++..++..+..+...|+.+
T Consensus 405 a~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 405 AQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 99988888777777777677777777774 5555555555555555555555443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-06 Score=91.52 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHH
Q 007262 416 RMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSI 495 (611)
Q Consensus 416 ~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~ 495 (611)
.+..|+.+..+=++.....+ ++|..++.=++.++-.+.++.+..+|+...+|+++|.+
T Consensus 438 v~~lgLa~~~~Rf~~~S~L~----------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at 495 (618)
T KOG3762|consen 438 VMYLGLACNVGRFLYYSYLQ----------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRAT 495 (618)
T ss_pred eeeehhhHHHHHHHHHHHhc----------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHH
Confidence 36677777777777776664 66777777799999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 007262 496 AASLFGLG-MAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVC 561 (611)
Q Consensus 496 ~~g~~~~~-~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~ 561 (611)
++|+.... ..+|-.+|+.|++.+....+ -..+|..+++.+++.++++...
T Consensus 496 ~Q~l~~g~f~GlG~g~GslIGG~~v~~fg----------------~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 496 AQGLLQGIFHGLGKGLGSLIGGFVVERFG----------------ARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HHHHHHHHhcccCcchhhhhhhhhheeeh----------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 99987665 77999999999888776543 1456777776666665555443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-07 Score=93.86 Aligned_cols=166 Identities=18% Similarity=0.117 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHh--C-----------------CChhhhhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 007262 36 IIANEAFEKVASYGLVTNMILYLMKDY--H-----------------LGVAKGTNVLFFWTAATNFMPILGAFLSDSYLG 96 (611)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~yl~~~~--g-----------------~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G 96 (611)
+...-+.+.+.+|+++-......+... | .+...--.=.....++.+.|.++++++.||+ |
T Consensus 331 lw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverl-G 409 (528)
T KOG0253|consen 331 LWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERL-G 409 (528)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHh-c
Confidence 344666788899998865554444321 1 1111111223445667889999999999996 9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCC
Q 007262 97 RFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRK 176 (611)
Q Consensus 97 r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~ 176 (611)
||+++..+.+++.+..+++..... ......++..+|+++. +.+.+++.|..|.+|.
T Consensus 410 RKkTMal~l~~f~iflfll~~c~~-------------------rn~~tvllf~arafis----g~fqvaYvYtPEVyPT- 465 (528)
T KOG0253|consen 410 RKKTMALSLILFGIFLFLLTTCKT-------------------RNAYTVLLFTARAFIS----GAFQVAYVYTPEVYPT- 465 (528)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcC-------------------cchhHHHHHHHHHHHh----chheEEEEecCcccch-
Confidence 999999999999888877764320 0112345667777764 4455667899999999
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHH
Q 007262 177 DNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
..|+.+.|....+.-+|+++.|.+. ...+ .+-..+..+...+.+++.+..
T Consensus 466 ------avRatgvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIav 515 (528)
T KOG0253|consen 466 ------AVRATGVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIAV 515 (528)
T ss_pred ------hhhhcchhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887 3333 233334444444444444443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-07 Score=101.26 Aligned_cols=176 Identities=14% Similarity=0.140 Sum_probs=143.9
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccC--chHHHHHHHHHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLG--RFLTIGLASFCS 108 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G--r~~~~~~~~~~~ 108 (611)
+..+.+.+...+..++++.-..+++.|.+ .++++..+++.++++..+...++.++.|+++|+. . ++.+..+++++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 34555556677777777777788888877 7999999999999999999999999999999996 6 344455555555
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhH
Q 007262 109 LLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188 (611)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (611)
.++...+++.. +++.++..-++.|+..|......+..+.|..+. ++...+
T Consensus 376 gl~~~~~p~~~-----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~-------~~l~~a 425 (509)
T KOG2504|consen 376 GLARLFLPFAT-----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGL-------EKLSNA 425 (509)
T ss_pred HHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh-------hhcchH
Confidence 56655555544 567788888899999999999988899999999 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHHHHHHHhC
Q 007262 189 FGWYYATSAIAVVIALTAIVYIQDHLG-WKVGFGVPAILMVLSLLLFFIAS 238 (611)
Q Consensus 189 ~~~~~~~~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~ 238 (611)
+++......++..++|.+.|++.|..+ |...|+.+.+..+++..+.+..+
T Consensus 426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999999999999999999887 99999998888777765544433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.1e-07 Score=98.05 Aligned_cols=176 Identities=16% Similarity=0.097 Sum_probs=119.4
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccC-------chHHH-HH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLG-------RFLTI-GL 103 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-------r~~~~-~~ 103 (611)
.+|.+.+..+++..+++.+.+++|.|+++.+|++..+.|+..++..+...+..+++|.++||... +||.+ .+
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i 338 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI 338 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence 35677889999999999999999999999999999999999999999999999999999999733 11222 12
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcch
Q 007262 104 ASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNER 183 (611)
Q Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~ 183 (611)
+.....++.+.+++.. . . ........+.++..+.|+..++.. .-..|..| +
T Consensus 339 ~~~~~ai~l~~l~~~~---~------~--------~~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~ap--------q 389 (466)
T KOG2532|consen 339 AFGGPAVFLLVLAFTS---D------E--------HRLLAVILLTIAIGLSGFNISGFY----KNHQDIAP--------Q 389 (466)
T ss_pred HHHHHHHHHHeeeecC---C------C--------cchHHHHHHHHHHHHcccchhhhH----hhhhhccc--------h
Confidence 2222222222222211 1 0 000112222222233333333322 22222222 6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcc---ccchhhhHHHHHHHHHHHHHHHH
Q 007262 184 VLESFFGWYYATSAIAVVIALTAIVYIQDH---LGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 184 ~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~---~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
.-+..+++.+...++.+.++|.+.+.+..+ ..|+.+|++.+++.+++.+++.+
T Consensus 390 ~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 390 HAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 678889999999999999999999998842 36999999999888887766544
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-05 Score=82.18 Aligned_cols=100 Identities=11% Similarity=0.087 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHH
Q 007262 72 VLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSF 151 (611)
Q Consensus 72 ~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (611)
...+.+....+.+++++.+-|.. |.|+.+.++..++..-.....+. |-..++++-
T Consensus 55 ~~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~------------------------N~y~~yfss 109 (461)
T KOG3098|consen 55 GQAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP------------------------NSYYLYFSS 109 (461)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc------------------------chHHHHHHH
Confidence 36777888889999999999996 99999999988877655444331 466789999
Q ss_pred HHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHH
Q 007262 152 CFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIA 203 (611)
Q Consensus 152 ~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~ 203 (611)
++.|+|.+..+...-.+.++..++ +.+.+-.++.-.....+.++|
T Consensus 110 allG~Gaallw~GqG~ylt~~st~-------~tie~Nisi~Wai~~~~li~G 154 (461)
T KOG3098|consen 110 ALLGFGAALLWTGQGGYLTSNSTR-------ETIERNISIFWAIGQSSLIIG 154 (461)
T ss_pred HHhhhhHHheecccceehhhcCCh-------hhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999888 555555555433334444433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-06 Score=93.82 Aligned_cols=164 Identities=10% Similarity=-0.023 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH-hCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 34 PFIIANEAFEKVASYGLVTNMILYLMKD-YHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
+..++..++......++.++++.|+++. .+.+...++...+.+..+..++.+++|++.||+ ++|+++.++.++..++.
T Consensus 235 ~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ 313 (410)
T TIGR00885 235 REGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALC 313 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence 3334445554444456678889998653 245555556667777788899999999999997 99999888888777776
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
++..+.. +.. .....++.|+..+..+|...+...+..++ +.......+
T Consensus 314 ll~~~~~-----------------------~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~-------~~~~~s~~l- 361 (410)
T TIGR00885 314 LGSIFAG-----------------------GHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQ-------DTKYGAAGL- 361 (410)
T ss_pred HHHHHcC-----------------------ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hhhhhHHHH-
Confidence 6666533 222 24556778888888899999999999987 332222222
Q ss_pred HHHHHHHHHHHHHHHHHhhccc------cchhhhHHHHHHHHHHH
Q 007262 193 YATSAIAVVIALTAIVYIQDHL------GWKVGFGVPAILMVLSL 231 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~~~------gw~~~f~~~~~~~~~~~ 231 (611)
.+ ..+|+.+.|.+.|++.|.. +.+..|+++..+.+...
T Consensus 362 ~~-~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (410)
T TIGR00885 362 VM-AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVIF 405 (410)
T ss_pred HH-HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHHH
Confidence 22 2399999999999999953 47888888776655443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.1e-06 Score=88.81 Aligned_cols=139 Identities=11% Similarity=0.098 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 007262 51 VTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCN 130 (611)
Q Consensus 51 ~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 130 (611)
....+.|+++.+|.+..+.+++......+..++.++.+++.||+ ||+... +.....++.+...... +.
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~-~~-------- 294 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPG-WF-------- 294 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHH-Hh--------
Confidence 34556788888999999999988888888889999999999997 743322 2222222222221111 00
Q ss_pred ccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007262 131 ILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYI 210 (611)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l 210 (611)
...+.+.+..+.++.++|.+...|...++..|.+|+ .++...++.+...++|..+++.+.+++
T Consensus 295 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 295 ---------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY--------LAGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred ---------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 001345567778889999999999999999988764 457778888888899999999998888
Q ss_pred hccccchh
Q 007262 211 QDHLGWKV 218 (611)
Q Consensus 211 ~~~~gw~~ 218 (611)
.....+..
T Consensus 358 ~~~~~~~~ 365 (394)
T PRK11652 358 PQTGQFSL 365 (394)
T ss_pred cCCchHHH
Confidence 76544443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-06 Score=89.82 Aligned_cols=178 Identities=9% Similarity=0.051 Sum_probs=135.0
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhC---CChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMKDYH---LGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
|..|.+.+........++..-...+.|.+..++ .+..-.|.+.++-.+.-++...+..++-+|+ |.|+.++++.++
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHH
Confidence 345554444444444555555567778776443 3344567788888888889999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
+.+=.+.+++++ +.+.+.+.+.+.++-.+.......-|+++.+|+ +..++
T Consensus 299 ~~iRi~~~~~~~-----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~-------rlsAt 348 (412)
T PF01306_consen 299 MAIRIIGSGFAT-----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDK-------RLSAT 348 (412)
T ss_dssp HHHHHHHHHT-------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G-------GGHHH
T ss_pred HHHHHHHHhhhc-----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hHHHH
Confidence 888888888766 788899999999999999999999999999999 77777
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCc
Q 007262 188 FFGWY-YATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASP 239 (611)
Q Consensus 188 ~~~~~-~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (611)
...+. +.+..+|.++.+.+.|++.|+.|++..|++.+.+.+...++..+..+
T Consensus 349 ~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 349 LYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 77764 46678999999999999999999998888877666555554444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.5e-06 Score=91.76 Aligned_cols=186 Identities=10% Similarity=0.062 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhh----hhHHHHHHHHHHHHHHHHHH----HHhhhccCchHH--HH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAK----GTNVLFFWTAATNFMPILGA----FLSDSYLGRFLT--IG 102 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~G----~laD~~~Gr~~~--~~ 102 (611)
+..+++...+-...+....+.++.|.++..+.+... .+++.++..+...+.+++-. ++.||..+.+.. +.
T Consensus 274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~ 353 (475)
T TIGR00924 274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT 353 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence 344444555556666666777888887765554322 56777777777777766654 445542122333 36
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcc
Q 007262 103 LASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNE 182 (611)
Q Consensus 103 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~ 182 (611)
+|.++..++....++...... .....+.+.+++..++.++|.....|...+++.+..|+
T Consensus 354 ~G~~l~~~~~~~~~~~~~~~~--------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~------- 412 (475)
T TIGR00924 354 LGMLFCGASFLTFAASIWFAD--------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ------- 412 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------
Confidence 778888888777665321000 00123678889999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCc
Q 007262 183 RVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASP 239 (611)
Q Consensus 183 ~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (611)
+.|++.+++++....+|..+++.+.....+..+|...|....+..++..++++...|
T Consensus 413 ~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 413 RLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988887777778888777766655555444444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-06 Score=92.13 Aligned_cols=139 Identities=13% Similarity=0.122 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
.+.+.+..++.....+++.++.+.|+++.+|++..+++.+.+...++..++.+++|+++||+ |||+.+..+..+...+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 305 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA 305 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence 34444455555666677888899999999999999999999999999999999999999997 99988887777666665
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
.++.+.. .. ..+...+.+...+.+++.|...+...+++++.+| +.++...++.
T Consensus 306 ~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------~~~g~~~g~~ 358 (366)
T TIGR00886 306 FLVVLGL--VS-----------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR--------RATGAVSGLV 358 (366)
T ss_pred HHHHhcC--CC-----------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch--------hhcccHHHHH
Confidence 5554322 00 0034444455555666667767777778888775 4567778877
Q ss_pred HHHHHHH
Q 007262 193 YATSAIA 199 (611)
Q Consensus 193 ~~~~~ig 199 (611)
+...++|
T Consensus 359 ~~~~~~g 365 (366)
T TIGR00886 359 GAIGNLG 365 (366)
T ss_pred HHhccCC
Confidence 6666554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.2e-06 Score=90.48 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
+..+++..++...++.-..+....|.+-.+|.+.....+.......+..++.++..++++|+ |||+++.++.++.+++.
T Consensus 238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~ 316 (467)
T COG2211 238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGY 316 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHH
Confidence 33344455565555555555566677767788888888888888888888899999999997 99999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
.+..+.. ..+.+++++..++.++|.+...+..+++++|..+-.+-+.+.|.-|..++.+
T Consensus 317 ~~~~f~~---------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~ 375 (467)
T COG2211 317 LLLYFTP---------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGM 375 (467)
T ss_pred HHHHhhc---------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHH
Confidence 8888754 2267888888999999999999999999999988644333333334445555
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc
Q 007262 193 YATSAIAVVIALTAIVYIQDHLG 215 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~~~g 215 (611)
....=+|..++..+.|++....|
T Consensus 376 tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 376 TFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 55555666666666666554433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.8e-06 Score=72.28 Aligned_cols=133 Identities=18% Similarity=0.318 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHH
Q 007262 382 TIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMW 461 (611)
Q Consensus 382 ~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (611)
..+..++..++.+++. +|.++ ++.+..+..+..++.+.....+ +.+.
T Consensus 7 ~~~~~~~~~~~~g~~~----d~~g~-------~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 53 (141)
T TIGR00880 7 YALGQLIYSPLSGLLT----DRFGR-------KPVLLVGLFIFVLSTAMFALSS----------------------NITV 53 (141)
T ss_pred ehhHHHHHHhhHHHHH----hhcch-------hHHHHHHHHHHHHHHHHHHHhc----------------------cHHH
Confidence 3344555555555443 44332 3345666666666665554432 4555
Q ss_pred HHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhH
Q 007262 462 LVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYD 541 (611)
Q Consensus 462 li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~ 541 (611)
.....++.+++.....+....++.+..|++.|++++++.+....+|..+++.+.+.+.+.. +| .
T Consensus 54 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~----------~ 117 (141)
T TIGR00880 54 LIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL------GW----------R 117 (141)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc------ch----------H
Confidence 6666788889998899999999999999999999999999999999999999888765422 22 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 007262 542 NYYWLLAIMSLVNLVYFLVCSW 563 (611)
Q Consensus 542 ~~f~~~~~~~~v~~~~~~~~~~ 563 (611)
..|++.+.+.++..+..++..+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 118 APFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC
Confidence 5677767666666666555443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.3e-05 Score=77.79 Aligned_cols=159 Identities=13% Similarity=0.109 Sum_probs=111.0
Q ss_pred HHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 007262 54 MILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILT 133 (611)
Q Consensus 54 ~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 133 (611)
....+++.+|+|.+|...+..+-.++..++ ++.|.+.|++ |.+.++.+|.+...+|..+++++-. .
T Consensus 24 yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~--~---------- 89 (250)
T PF06813_consen 24 YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVS--G---------- 89 (250)
T ss_pred hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHh--C----------
Confidence 445688999999999999999999999875 8889999997 9999999999999999988887641 0
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007262 134 QSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDH 213 (611)
Q Consensus 134 ~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~ 213 (611)
+ ......+.+.+..++.+.+.+....++.....+.||+ .||.+.++.-....+++.+-..+...+...
T Consensus 90 ---~-i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~--------~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 90 ---R-IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR--------SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred ---c-cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc--------ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 1 1112566777777777777777767777777788975 578888887777777666555554444433
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhC
Q 007262 214 LGWKVGFGVPAILMVLSLLLFFIAS 238 (611)
Q Consensus 214 ~gw~~~f~~~~~~~~~~~~~~~~~~ 238 (611)
..-...+.+.....+++++.+.+.+
T Consensus 158 ~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 158 DPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhee
Confidence 2223333333333444444444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-05 Score=87.71 Aligned_cols=155 Identities=11% Similarity=0.016 Sum_probs=94.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 007262 39 NEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLT 118 (611)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~ 118 (611)
..++..+......+....|.+..+|. ....+.+.+++.++..++.+++++++||+ |||+++..+..+..+..++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~ 313 (460)
T PRK11462 236 LTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFV 313 (460)
T ss_pred HHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHh
Confidence 33344343333333333333333443 33445667777888889999999999997 99888765554443333332221
Q ss_pred hhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHH
Q 007262 119 AMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAI 198 (611)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 198 (611)
+ . .+...+++..++.|++.++..+...++++|..+..+-+.+++.-+..++...+...+
T Consensus 314 ~---~------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Kl 372 (460)
T PRK11462 314 P---M------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKL 372 (460)
T ss_pred c---h------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHH
Confidence 1 0 122234445566788888888888889999887533233323445556776777888
Q ss_pred HHHHHHHHHHHhhccccc
Q 007262 199 AVVIALTAIVYIQDHLGW 216 (611)
Q Consensus 199 g~~l~~~~~~~l~~~~gw 216 (611)
|..+++.+.|.+.+..||
T Consensus 373 g~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 373 GLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 998888888877665454
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-05 Score=81.69 Aligned_cols=156 Identities=22% Similarity=0.273 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 007262 52 TNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNI 131 (611)
Q Consensus 52 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 131 (611)
..+=+|--+.+|++..|...++..+..+..++..+.|++..|-.+++++..+++.+..++..+..++..
T Consensus 229 ~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~----------- 297 (403)
T PF03209_consen 229 VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP----------- 297 (403)
T ss_pred HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 344467777899999999999999999999999999999886568999999999998888887776651
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 132 LTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQ 211 (611)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~ 211 (611)
..+.+.+..+.++.|+|.|.+.....+...|...+ +.-+..++.+..+..++..++-.++|.+.
T Consensus 298 ---------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~-------~~aG~~mG~WGaaQA~A~Glg~~~GG~~~ 361 (403)
T PF03209_consen 298 ---------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSA-------GRAGLFMGAWGAAQAIARGLGTFLGGALR 361 (403)
T ss_pred ---------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC-------cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12577899999999999999999999999999988 66788999998888888888887777665
Q ss_pred cc----------ccchhhhHHHHHHHHHHHHHH
Q 007262 212 DH----------LGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 212 ~~----------~gw~~~f~~~~~~~~~~~~~~ 234 (611)
|- .+|..+|.+-+.+.++++.++
T Consensus 362 D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 362 DLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 41 246667777666665555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.3e-05 Score=83.34 Aligned_cols=168 Identities=12% Similarity=0.001 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
.++...+...+.....+......|.++++.+|++..+.++.......+..++..+.+++.++. ++++.+.....+..++
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig 297 (413)
T PRK15403 219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVG 297 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence 355445555666667777777889999999999999999988778888888778887766544 4444443333444444
Q ss_pred HHHHHHhhh-cCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHH
Q 007262 112 MFLLWLTAM-IPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFG 190 (611)
Q Consensus 112 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (611)
..+.....- .+ .+....+++.++.++|.+...|+..+..-.+.+ ..++++.+
T Consensus 298 ~~l~~~~~~~~~-------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~--------~~~G~a~a 350 (413)
T PRK15403 298 LALLIVGNLLWP-------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNN--------LPKGTVSA 350 (413)
T ss_pred HHHHHHHHHHcc-------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCC--------CCCcHHHH
Confidence 433332210 01 123335677888889999988888854432222 22466666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHH
Q 007262 191 WYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMV 228 (611)
Q Consensus 191 ~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~ 228 (611)
.++.....+..+++.+.+++.+. +-+++|.....+..
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 387 (413)
T PRK15403 351 SLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence 66666666777777778877665 44666655544433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.4e-06 Score=91.36 Aligned_cols=151 Identities=15% Similarity=0.206 Sum_probs=116.0
Q ss_pred cccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCcc
Q 007262 375 AGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAV 454 (611)
Q Consensus 375 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (611)
.+.++..-.+.-++..|+.+.+. +|+.| ...+.+|.++..++++..++..
T Consensus 70 ~Gll~~vf~v~~~i~sPl~gyLa----dryNR-------~~v~~vG~~iW~~Av~~~~fs~------------------- 119 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFGYLA----DRYNR-------KRVIAVGIFIWTLAVFASGFSN------------------- 119 (493)
T ss_pred ccchhHHHHHHHHHHHHHHHHHH----hhcCc-------ceEEeeHHHHHHHHHHHHHHHH-------------------
Confidence 34566666667777888877654 44433 3347888888888888877764
Q ss_pred ccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccC
Q 007262 455 LEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSN 534 (611)
Q Consensus 455 ~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~ 534 (611)
++|-+.+.-.+.|+||....|....++.+.+|.+.|++..++++++-.+|..+|..+...+...+. .|
T Consensus 120 ---~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W---- 187 (493)
T KOG1330|consen 120 ---HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW---- 187 (493)
T ss_pred ---HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce----
Confidence 667777778999999999999999999999999999999999999999999998766555443331 35
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhhccCccccccc
Q 007262 535 INKGRYDNYYWLLAIMSLVNLVYFLVCSWAYGPCVDRVT 573 (611)
Q Consensus 535 ~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 573 (611)
++.|..-++++++.+++..++.++-.++..++.
T Consensus 188 ------r~af~~~avl~vi~~~L~~~f~~eP~rga~~~~ 220 (493)
T KOG1330|consen 188 ------RWAFRGSAVLGVIVGLLVFLFVREPERGARDEV 220 (493)
T ss_pred ------EEEEEeehHHHHHHHHHHHhhccCccccccccc
Confidence 667888899999999988888777655444433
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-06 Score=89.10 Aligned_cols=155 Identities=14% Similarity=0.020 Sum_probs=122.2
Q ss_pred hhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccC--chHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 007262 49 GLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLG--RFLTIGLASFCSLLGMFLLWLTAMIPKVKP 126 (611)
Q Consensus 49 ~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G--r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 126 (611)
.+-..++.|+.+.+..+..+.|.+..-..+...+++.+.|.++||+ + |......++++..++.....++.
T Consensus 288 fLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP~~~------- 359 (464)
T KOG3764|consen 288 FLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIPFAT------- 359 (464)
T ss_pred HhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhHhhh-------
Confidence 3446688899999996666999998888999999999999999997 8 64444444444444333333333
Q ss_pred CCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 007262 127 SPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTA 206 (611)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~ 206 (611)
++..+++-++..+++.+...+..........+.+++.+- +..+...++...+..+|..++|.+
T Consensus 360 ----------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~-~vYGsVyaIad~a~sla~a~GP~~ 422 (464)
T KOG3764|consen 360 ----------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGF-NVYGSVYAIADAAFSLAYAIGPTF 422 (464)
T ss_pred ----------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhcccc-ceeeeHHHHHHHHHHHhhhccccc
Confidence 667788888899999999999888888888888776655 588889999999999999999999
Q ss_pred HHHhhccccchhhhHHHHHHHH
Q 007262 207 IVYIQDHLGWKVGFGVPAILMV 228 (611)
Q Consensus 207 ~~~l~~~~gw~~~f~~~~~~~~ 228 (611)
+|.+.+..|++|.-.+.++..+
T Consensus 423 gg~iv~~iGF~wl~~iig~~n~ 444 (464)
T KOG3764|consen 423 GGSLVEAIGFEWLMTIIGILNL 444 (464)
T ss_pred cchheeehhHHHHHHHHHHHHH
Confidence 9999999999987665555433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00012 Score=73.49 Aligned_cols=142 Identities=20% Similarity=0.270 Sum_probs=106.4
Q ss_pred HHHHHhCCCh--hhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccc
Q 007262 57 YLMKDYHLGV--AKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQ 134 (611)
Q Consensus 57 yl~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 134 (611)
....+++.+. ...+++.+.+.+...++.++.|+++||+ |||+.+..+.....++.+++.+..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~-------------- 91 (338)
T COG0477 27 LLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN-------------- 91 (338)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc--------------
Confidence 3344455454 4788999999999999999999999997 9998888887765666555555441
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHH-HHHHHHHHHHHHHHHhhcc
Q 007262 135 SCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYA-TSAIAVVIALTAIVYIQDH 213 (611)
Q Consensus 135 ~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~ig~~l~~~~~~~l~~~ 213 (611)
.....+++.|...|++.+...+...+++.|.+|+ . +.|+...+.... ...+|..++|.+.+.+...
T Consensus 92 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 92 -------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A-----TERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred -------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1467888999999999999999999999999885 1 467777777766 4677888888666665543
Q ss_pred --ccchhhhHHHHHH
Q 007262 214 --LGWKVGFGVPAIL 226 (611)
Q Consensus 214 --~gw~~~f~~~~~~ 226 (611)
.+|+..|.+....
T Consensus 159 ~~~~~~~~~~~~~~~ 173 (338)
T COG0477 159 LLWGWRAAFLLAALL 173 (338)
T ss_pred HhcchHHHHHHHHHH
Confidence 5788855554444
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=85.53 Aligned_cols=170 Identities=11% Similarity=0.050 Sum_probs=133.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHH
Q 007262 38 ANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWL 117 (611)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~ 117 (611)
+..++..+..-.+.+++ .+=.++++-.+.-.|.+...-.++-++..++.+++-.++ |+-+++.+++.++.+=.+.+..
T Consensus 378 ~~av~mG~g~~lv~tFL-fWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~ 455 (618)
T KOG3762|consen 378 FVAVVMGAGVGLVFTFL-FWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSY 455 (618)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHH
Confidence 34444444433344444 333456776666667666666677888899999999997 9999999999998888777776
Q ss_pred hhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHH-H
Q 007262 118 TAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYAT-S 196 (611)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~ 196 (611)
.. |.|+.+..-+++|+..+..+.++.+|+++..|+ +-|.++.++.... -
T Consensus 456 L~-----------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp-------~l~at~Q~l~~g~f~ 505 (618)
T KOG3762|consen 456 LQ-----------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPP-------GLRATAQGLLQGIFH 505 (618)
T ss_pred hc-----------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCC-------cchHHHHHHHHHHhc
Confidence 65 788888899999999999999999999999999 7888888887655 4
Q ss_pred HHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCc
Q 007262 197 AIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASP 239 (611)
Q Consensus 197 ~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (611)
.+|-.+|.+++|.+...+|-+..|.+.++..++.++++....+
T Consensus 506 GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~ 548 (618)
T KOG3762|consen 506 GLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQL 548 (618)
T ss_pred ccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7899999999999999999999999888877777666655443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00042 Score=67.78 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=92.4
Q ss_pred HHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccC
Q 007262 56 LYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQS 135 (611)
Q Consensus 56 ~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (611)
.|+-+.+|+...|.+.+..+......+...+.|-++|+- |||+.-...++...++ -++. ..
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitYiLs----CiTK-hS------------- 121 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITYILS----CITK-HS------------- 121 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHHHHH----HHhh-cC-------------
Confidence 456678999999999998888888888889999999996 9999754444443333 2222 11
Q ss_pred CCCCCchhhHHHHHHHHHHHHhccccchhhhhh-hhcccCCCCCCCcchhhhhHHHHHH-HHHHHHHHHHHHHHHHhhcc
Q 007262 136 CESPTTAQMTLLISSFCFISIGAGGIRPCSIAF-GADQLDRKDNPNNERVLESFFGWYY-ATSAIAVVIALTAIVYIQDH 213 (611)
Q Consensus 136 ~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~l~~~~~~~l~~~ 213 (611)
.++-.++++|++-|+.......+--++ ++|+.++++=+ . +-...-++--. ....+-.+++.+.+-.+.++
T Consensus 122 ------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Fe-q-qWls~TFskA~ffgNglvAiiaGlfgn~lvd~ 193 (454)
T KOG4332|consen 122 ------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFE-Q-QWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDT 193 (454)
T ss_pred ------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCCh-H-hhhhHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 145668999999999999888776654 45554331100 0 11222222211 12223444444455556665
Q ss_pred c--cchhhhHHHHHHHHHHHHH
Q 007262 214 L--GWKVGFGVPAILMVLSLLL 233 (611)
Q Consensus 214 ~--gw~~~f~~~~~~~~~~~~~ 233 (611)
+ |...+|-..+.+..++..+
T Consensus 194 ~slGPVAPFdAAacfLaigmAv 215 (454)
T KOG4332|consen 194 FSLGPVAPFDAAACFLAIGMAV 215 (454)
T ss_pred hccCCCCchHHHHHHHHHHHHH
Confidence 4 5666776655555544433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.1e-05 Score=78.13 Aligned_cols=160 Identities=13% Similarity=0.125 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
++...+..++--.+--.+.++++.|+.+..|++..+++..++.+..+.+++.+++-++-.|+ -..|.+.+.+++..+-.
T Consensus 238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~ 316 (422)
T COG0738 238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLL 316 (422)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 44444455554444455668899999998999999999999999999999999999998897 77777766665544444
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
+...++. +.+. +.+..+.|+..+..+|+..+...+..|++++ .++..
T Consensus 317 ~~~~l~~-----------------------g~v~-~~~l~~ig~F~simfPTIfslal~~l~~~ts------~~s~~--- 363 (422)
T COG0738 317 LAVALIG-----------------------GVVA-LYALFLIGLFNSIMFPTIFSLALKNLGEHTS------VGSGL--- 363 (422)
T ss_pred HHHHHhc-----------------------ChHH-HHHHHHHHHHhHHHHHHHHHHHHhccCcccc------cccee---
Confidence 4444443 3333 3445678899999999999999999996432 22221
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhH-HHHHH
Q 007262 193 YATSAIAVVIALTAIVYIQDHLGWKVGFG-VPAIL 226 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~~~gw~~~f~-~~~~~ 226 (611)
-....+|+.+.|.+.|++.|..|-...+. ++..+
T Consensus 364 l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc 398 (422)
T COG0738 364 LVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLC 398 (422)
T ss_pred eeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 12345899999999999999988776665 34333
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00011 Score=81.25 Aligned_cols=173 Identities=16% Similarity=0.074 Sum_probs=112.8
Q ss_pred HHHHHhhhhHHHHHHHHHH--HhCCCh------hhhhHHHHHHHHHHHHHHHHH----HHHhhhccCchHHHHHHHHHHH
Q 007262 42 FEKVASYGLVTNMILYLMK--DYHLGV------AKGTNVLFFWTAATNFMPILG----AFLSDSYLGRFLTIGLASFCSL 109 (611)
Q Consensus 42 ~~~~~~~~~~~~~~~yl~~--~~g~~~------~~~~~~~~~~~~~~~~~~~~~----G~laD~~~Gr~~~~~~~~~~~~ 109 (611)
+....+|.+...++.++.. ..+.+. ...+++.++..+...+..++. +++.||+ +..+.+.+|.++..
T Consensus 283 ~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~~ 361 (500)
T PRK09584 283 LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLCS 361 (500)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHHH
Confidence 4455666666666666543 111111 225566666666666666666 5556664 66688889999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
++.+.+.++.+.+. ..+.-+.+.+....++.++|.+...|...+++.+..|+ +.|++.+
T Consensus 362 l~f~~l~~~~~~~~--------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~-------~~rg~~~ 420 (500)
T PRK09584 362 GAFLVLPLGAKFAN--------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ-------RLMGFIM 420 (500)
T ss_pred HHHHHHHHHHHhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH-------HHHHHHH
Confidence 99888776652211 00112455688889999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc----------cccchhhhHHHHHHHHHHHHHHHH
Q 007262 190 GWYYATSAIAVVIALTAIVYIQD----------HLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~~----------~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
+.++....+|..++..+.+.... ..++...|...+++.++..++++.
T Consensus 421 g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 421 GSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99887777777777666543321 113556666555544433333333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=9e-05 Score=81.68 Aligned_cols=149 Identities=13% Similarity=0.126 Sum_probs=103.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhCCChh----hhhHHHHHHHHHHHHHHHHHHHHhhhccCchHH-------HHHHHHHH
Q 007262 40 EAFEKVASYGLVTNMILYLMKDYHLGVA----KGTNVLFFWTAATNFMPILGAFLSDSYLGRFLT-------IGLASFCS 108 (611)
Q Consensus 40 ~~~~~~~~~~~~~~~~~yl~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~-------~~~~~~~~ 108 (611)
..+....+....+.++.|.++..+.+.. ...++.+...+...+..++.|++.||+ |||+. +.+|.++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence 3344555555557777887754333211 234555555566777888889999997 88873 77787777
Q ss_pred HHHHHHHHHhhh-cCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 109 LLGMFLLWLTAM-IPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 109 ~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
.++.+..+.... ... .....+.+.+....++.|+|.+...|...+++.+..|+ +.++.
T Consensus 357 ~~~~~~~~~~~~~~~~--------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~-------~~~g~ 415 (489)
T PRK10207 357 SLGFLTAAAAGMWFAD--------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ-------HLMGF 415 (489)
T ss_pred HHHHHHHHHHHHhhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH-------HHHHH
Confidence 777654432110 000 00112456677788999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 007262 188 FFGWYYATSAIAVVIALTAIVYI 210 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l 210 (611)
++++++...++|..++..+....
T Consensus 416 ~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 416 ILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888777655
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.5e-05 Score=86.90 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhc---cCchHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSY---LGRFLTIGLASFCSL 109 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~~~~~~~~~~~ 109 (611)
.|...+..++.....|++..++|.|+++-.|++..+++.+...+.++..++.+++|+++||. ..+|..+...+.++.
T Consensus 275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~ 354 (495)
T KOG2533|consen 275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA 354 (495)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45567788999999999999999999996679999999999999999999999999999993 266666666655544
Q ss_pred -HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhH
Q 007262 110 -LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188 (611)
Q Consensus 110 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (611)
++.+.+.... .......+.+....+.....++......+...++ .+|.+.
T Consensus 355 ~~g~~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~------~k~~~~ 405 (495)
T KOG2533|consen 355 IIGAISLLAAA-----------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGN------TKALTT 405 (495)
T ss_pred HHHHHHHHhhc-----------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccch------HHhHHH
Confidence 3323333222 1222333333344455555566666666666551 334444
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhhccccchhhhHHHH
Q 007262 189 FGWYYATSAIAVVIA-LTAIVYIQDHLGWKVGFGVPA 224 (611)
Q Consensus 189 ~~~~~~~~~ig~~l~-~~~~~~l~~~~gw~~~f~~~~ 224 (611)
.+.+..+.+.++.++ ++..+.....++|...|....
T Consensus 406 ~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~ 442 (495)
T KOG2533|consen 406 VSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV 442 (495)
T ss_pred HhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence 444444444444433 333454555577888884433
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00024 Score=77.47 Aligned_cols=208 Identities=14% Similarity=0.037 Sum_probs=140.9
Q ss_pred hhccCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HhCCChh------h----hhHHHHHHHHHHHHHHHHHHHHhh
Q 007262 24 RRRKGGLITMPFIIANEAFEKVASYGLVTNMILYLMK-DYHLGVA------K----GTNVLFFWTAATNFMPILGAFLSD 92 (611)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~g~~~~------~----~~~~~~~~~~~~~~~~~~~G~laD 92 (611)
+..+.-++.++.++.++++.+++++....+...|+.+ .+|-++. + ..+....+.+...+..++--++.+
T Consensus 251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~ 330 (477)
T TIGR01301 251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR 330 (477)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888999999999999999999999999875 4543321 1 234444445555566667788899
Q ss_pred hccC-chHHHHHHHHHHHHHHHHHHHhhhcCC-CCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhh
Q 007262 93 SYLG-RFLTIGLASFCSLLGMFLLWLTAMIPK-VKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGA 170 (611)
Q Consensus 93 ~~~G-r~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~ 170 (611)
++ | ||++..++.++..+|+....+..+++. ..+ .|=+|..-.+.....+..++...+.|+..+......+++++
T Consensus 331 ~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s 406 (477)
T TIGR01301 331 GW-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRY---YDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALAS 406 (477)
T ss_pred Hh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccc---ccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 86 8 577778888888888877765442211 000 00000000011112356677788999999999999999999
Q ss_pred cccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--chhhhHHHHHHHHHHHHHHHHhCcc
Q 007262 171 DQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLG--WKVGFGVPAILMVLSLLLFFIASPL 240 (611)
Q Consensus 171 ~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g--w~~~f~~~~~~~~~~~~~~~~~~~~ 240 (611)
+..++.+ +..|..+++.+.+..+...+..+..|.+.+..| -.+.+.+.++..+++.++.+...|+
T Consensus 407 ~~~~~~~-----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 407 IRSSNLG-----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHccccC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 9998511 456888999999999999988887777555443 4567777777777776666555554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0082 Score=63.61 Aligned_cols=155 Identities=11% Similarity=0.089 Sum_probs=109.7
Q ss_pred HHHHHHHHHH-hCCChhhhh-HHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 007262 52 TNMILYLMKD-YHLGVAKGT-NVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPC 129 (611)
Q Consensus 52 ~~~~~yl~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 129 (611)
.++..|+.+. .|++..|.. -+.=+..-......++...+.|.. |.|++++++.+...+...++.+..
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~---------- 92 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT---------- 92 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC----------
Confidence 4677888876 899998875 344444556677888889999985 999999999888787777776655
Q ss_pred CccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007262 130 NILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVY 209 (611)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~ 209 (611)
+...+.+.-+.-|++.+. ..+.++++=...|+ +.-.++.++...+.-+|-.++.+++-.
T Consensus 93 -------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~-------~~yq~vts~~raa~l~g~~~s~~lgQl 151 (412)
T PF01770_consen 93 -------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDK-------EHYQKVTSYTRAATLVGRFISSLLGQL 151 (412)
T ss_pred -------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777776655 45556666666666 666677777777777888888876665
Q ss_pred hhc--cccchhhhHHHHHHHHHHHHHHHHhC
Q 007262 210 IQD--HLGWKVGFGVPAILMVLSLLLFFIAS 238 (611)
Q Consensus 210 l~~--~~gw~~~f~~~~~~~~~~~~~~~~~~ 238 (611)
+.. ..+++....+......+++++.++.+
T Consensus 152 lvs~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 152 LVSFGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 554 34566666777666666666554443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.011 Score=62.54 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007262 458 SAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSA 517 (611)
Q Consensus 458 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~ 517 (611)
+.|.++..++..|+-.+..+......+.++.|++.|..++|.......+|..++..+.-.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 566666777888999999999999999999999999999999999999998888776544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.7e-05 Score=83.48 Aligned_cols=135 Identities=7% Similarity=-0.094 Sum_probs=106.8
Q ss_pred HHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHh-hhcCCCCCCCCCccccCCC
Q 007262 59 MKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLT-AMIPKVKPSPCNILTQSCE 137 (611)
Q Consensus 59 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 137 (611)
.+.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++..++.+...+. ..+..
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~-------------- 344 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNL-------------- 344 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccc--------------
Confidence 457999999999999999999999999999999996 99999999988888776554311 10110
Q ss_pred CCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007262 138 SPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLG 215 (611)
Q Consensus 138 ~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g 215 (611)
..+..+.+.+...-++.+++.+........++.+..|+ +.+++.++++....++|..+++.+++++.++.|
T Consensus 345 ~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~-------~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 345 AFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPS-------GCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred ccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCC-------CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00001222344556678888888888899999999999 888999999999999999999999999988776
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00011 Score=58.83 Aligned_cols=67 Identities=24% Similarity=0.154 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 39 NEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
..++...+.-.+..+++.|+++ .|++..+.|.+.++..+...+++++.|+++||+ ||++.+.....+
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~ 74 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence 3444444555566788888884 999999999999999999999999999999997 888877666544
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.075 Score=57.91 Aligned_cols=160 Identities=8% Similarity=-0.043 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCCh-----hhhhHHHHHHHHHHHHH-HHHHHHHhhhccCchHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGV-----AKGTNVLFFWTAATNFM-PILGAFLSDSYLGRFLTIGLASF 106 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~-----~~~~~~~~~~~~~~~~~-~~~~G~laD~~~Gr~~~~~~~~~ 106 (611)
.+.+.+.-+|-.++++.+ --+++.+..+. ....++.+...+.+.+. .++-+++++|+ +|++++.+...
T Consensus 9 ~~~~~l~fF~il~~Y~iL-----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~~~~ 82 (472)
T TIGR00769 9 FLPLFLMFFCILFNYTIL-----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYTVIS 82 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHHHHH
Confidence 344444445555554433 23577776632 34566666555544444 78889999997 99999988877
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCccccCC------CCCCch--------hhHHHHHHHHHHHHhccccc-hhhhhhhhc
Q 007262 107 CSLLGMFLLWLTAMIPKVKPSPCNILTQSC------ESPTTA--------QMTLLISSFCFISIGAGGIR-PCSIAFGAD 171 (611)
Q Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--------~~~~l~~~~~~~glg~g~~~-~~~~~~~~~ 171 (611)
.+.....+.++.- .|. .+.+|-+. ...... +.|...+..+...+-..... -.-++++.|
T Consensus 83 ~F~~~f~lF~~vl-~p~-----~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand 156 (472)
T TIGR00769 83 PFLGFFALFAFVI-YPL-----SDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ 156 (472)
T ss_pred HHHHHHHHHHHHH-hcc-----hhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7776666655442 121 11111100 000000 01111111222222222233 377899999
Q ss_pred ccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 172 QLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQ 211 (611)
Q Consensus 172 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~ 211 (611)
.+.. ++-.+.++.++.+.|+|..+++.+..++.
T Consensus 157 i~t~-------~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 157 ITTI-------DEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred cCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 88888999999999999999998888876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00039 Score=76.12 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCch--h
Q 007262 415 LRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKS--M 492 (611)
Q Consensus 415 ~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~ 492 (611)
+.+.+|.++++++.++++..+ .+...+.....+..+|.++..+...+++.+.+|++ .
T Consensus 77 r~iliG~il~~lg~lll~~~~---------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~ 135 (493)
T PRK15462 77 MAVMLGALLMAIGHVVLGASE---------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR 135 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc
Confidence 347788888887776554321 11122333444555677777777788899999875 7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007262 493 SSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWA 564 (611)
Q Consensus 493 rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 564 (611)
|+++.+++....++|+.+++.+.+.+.+.. +| ...|.+.++.++++++.+++..+.
T Consensus 136 R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw----------~~~F~iaaigm~l~li~~~~~~~~ 191 (493)
T PRK15462 136 RDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SW----------AMGFGLAAVGMIAGLVIFLCGNRH 191 (493)
T ss_pred ccceehHHHHHHHHHHHHHHHHHHHHHhhh------Ch----------HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999998875433 23 566777666666666555443333
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0011 Score=73.60 Aligned_cols=182 Identities=14% Similarity=0.081 Sum_probs=100.0
Q ss_pred cchHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007262 30 LITMPFIIANEAFEKVAS-YGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCS 108 (611)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 108 (611)
++.....+....+..+.- ..+..+.+.. -+..|.+... .+...+..+...++..++.++.||+ |||+.++.+...+
T Consensus 293 ~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i-f~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~m 369 (513)
T KOG0254|consen 293 RKRLIIGLLLQLFQQLTGINYVFYYSTTI-FKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAGM 369 (513)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeehHHH-HHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHHH
Confidence 343433344444444433 3444444444 4456665443 4555556667778888889999997 9999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCccccCCC-CCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 109 LLGMFLLWLTAMIPKVKPSPCNILTQSCE-SPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
.++.++++........ .. .........+...-+.......+..|..+.+.+|.+|. +.|+.
T Consensus 370 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~-------~~r~~ 431 (513)
T KOG0254|consen 370 SICLVILAVVGVFALY-----------YPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL-------RLRSK 431 (513)
T ss_pred HHHHHHHHHHHHHhcc-----------CCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH-------hHHhh
Confidence 9999888754311110 00 00111111222222223333334456666788999999 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHH
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLL 232 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 232 (611)
+.++......+...+-......+.+..++...|.+......+..+
T Consensus 432 ~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~ 476 (513)
T KOG0254|consen 432 GASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLI 476 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 888765555444433332333333333333445444444443433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00043 Score=78.71 Aligned_cols=137 Identities=12% Similarity=0.086 Sum_probs=92.9
Q ss_pred cccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------C--
Q 007262 375 AGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIRE------G-- 446 (611)
Q Consensus 375 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~------~-- 446 (611)
.+.+.....+...+..++...+ .+|.+| .+.+.+|+++++++.++.+..+-....+...+ +
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~----~~r~~r-------~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYF----GTKLHR-------PIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHh----hcccCc-------ceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 4556666666666666665553 445433 33478888888888888776642110000000 0
Q ss_pred ------cc-C------------CCCccc--cchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHH
Q 007262 447 ------YL-N------------NGQAVL--EMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMA 505 (611)
Q Consensus 447 ------~~-~------------~~~~~~--~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 505 (611)
+. + .+.... ...+..+++.-++.|+|++..++....++.+.+|++.|+.+.|+++....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 00 0 000000 12355667788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhc
Q 007262 506 VANLLASAIVSAVDDIT 522 (611)
Q Consensus 506 lg~~l~~~i~~~i~~~~ 522 (611)
+|..+|+.+++.+.+..
T Consensus 219 iG~~lG~llgg~l~~~~ 235 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQIY 235 (633)
T ss_pred hhhHHHHHHHHHHHhcc
Confidence 99999999988877543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00097 Score=74.44 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=84.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCch
Q 007262 412 GVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKS 491 (611)
Q Consensus 412 ~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~ 491 (611)
++++.+.+|.++.+++.++.+.... + ....+.+.+.+..++.|+|++..++.....+.+.+| +
T Consensus 89 G~R~vllig~ll~~iG~ll~ala~~---------~-------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~ 151 (591)
T PTZ00207 89 GPRPIFVLSMTVFCLGTLLFALTFQ---------E-------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-S 151 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhc---------c-------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-h
Confidence 4455688999999999888876520 0 001356777778889999999988888888888887 6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007262 492 MSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWA 564 (611)
Q Consensus 492 ~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 564 (611)
.||.++|+......+|.++.+.+...+.. . +| ..+|++.+++.++..++.+.+.+.
T Consensus 152 ~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~------~~----------~~~fl~l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 152 NRGAVVAIMKTFTGLGSAILGSIQLAFFS-D------NT----------SAYFFFLMSFALVVGILAIVFMRL 207 (591)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------hH----------HHHHHHHHHHHHHHHHHHHhheeC
Confidence 69999999999999999875555443321 0 12 456777777777766666555443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.65 E-value=2e-07 Score=101.51 Aligned_cols=183 Identities=13% Similarity=0.151 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
+...+....+..+..+....+...++.+..+.+.. -.......+...++.+++.++.||+ |||++++++..+..++.
T Consensus 254 ~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~~ 330 (451)
T PF00083_consen 254 LLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAICS 330 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 33333333333333333333444445555666666 2222334455667778888999997 99999999988877776
Q ss_pred HHHH-HhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 113 FLLW-LTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 113 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
+.+. .....+. .. ...+...+....+.......+..+....+.+|.+|. +.|.++.++
T Consensus 331 ~~~~~~~~~~~~------------~~--~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt-------~~R~~~~~~ 389 (451)
T PF00083_consen 331 LILGIIFFLGVS------------SS--SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPT-------KVRSTGIGL 389 (451)
T ss_pred cccccccccccc------------cc--cccccccceeeeeccccccccccccccccccccccc-------ccccccccc
Confidence 6554 1110000 00 000111111111111122224456777889999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCc
Q 007262 192 YYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASP 239 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (611)
.+....+++.+++.+...+.+..+-...|.+.+.+.++..+......|
T Consensus 390 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lp 437 (451)
T PF00083_consen 390 SYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLP 437 (451)
T ss_pred ccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEe
Confidence 988888999988888888777666333455544444444444333333
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0039 Score=67.17 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=72.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCch
Q 007262 412 GVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKS 491 (611)
Q Consensus 412 ~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~ 491 (611)
+.++.+.++++..++..++.+... +...+...-++.|++|+... ....+++.-+|++
T Consensus 90 G~K~vL~l~~l~Wsl~t~L~~fa~----------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k 146 (511)
T TIGR00806 90 RYKPVLVLQALSFVCVWLLLLLGT----------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS 146 (511)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH
Confidence 344457778888777777777664 57778888899999999999 9999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 492 MSSIAASLFGLGMAVANLLASAIVSAV 518 (611)
Q Consensus 492 ~rg~~~g~~~~~~~lg~~l~~~i~~~i 518 (611)
.|++++|+++....+|.++++.+.+.+
T Consensus 147 ER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 147 RYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998883
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.037 Score=57.24 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=92.3
Q ss_pred ccCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhh-----hccCchHH
Q 007262 26 RKGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSD-----SYLGRFLT 100 (611)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD-----~~~Gr~~~ 100 (611)
.++..+.+.++++..+...+- +|+...+|..++ .-|.|-++.+....++ .=.-.-++..++.| |+ ||||.
T Consensus 26 ~~~d~~~illLl~LYllQGiP-~GL~~~iP~lL~-ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIP-LGLIGAIPLLLQ-AKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCc-hhHhhhhHHHhc-CCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence 556677788878777776654 677775555555 5677766655443322 22344567788888 86 99986
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCC
Q 007262 101 IGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPN 180 (611)
Q Consensus 101 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~ 180 (611)
-++= .-..+|.++..++-..+.-+. .+... .+...+...+++.-++.+..--++-+..-.+..+
T Consensus 101 Wvvp-~q~llG~~mllLs~~v~~~~g--------~ng~~--p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~----- 164 (510)
T KOG3574|consen 101 WVVP-CQYLLGLFMLLLSYLVDRGLG--------GNGGL--PNVVALTLLFLLLNFLAATQDIAVDGWALTMLSR----- 164 (510)
T ss_pred eeee-hHHHHHHHHHHHhhCCCcccc--------cCCCC--cchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCH-----
Confidence 5432 333445545444432221100 01111 1233344445566666666666777777777777
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHH
Q 007262 181 NERVLESFFGWYYATSAIAVVIALTA 206 (611)
Q Consensus 181 ~~~~r~~~~~~~~~~~~ig~~l~~~~ 206 (611)
++.+-+......+.+.|.+++..+
T Consensus 165 --e~lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 165 --ENLGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred --hhcCchhHHHHHHHhhhHHhhcce
Confidence 666666666666777777776654
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.003 Score=66.74 Aligned_cols=166 Identities=14% Similarity=0.068 Sum_probs=113.3
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhc---cCchHHHHHH-HH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSY---LGRFLTIGLA-SF 106 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~~~~~~-~~ 106 (611)
+.+..+..+.+...+++-.=.+++++|++ .+|++..-.+.+-.+.-+...+.+++.|..+||. +||||-++.. .+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 33444444455555555555578888877 5899988888888888889999999999999986 5776655544 55
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhh
Q 007262 107 CSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLE 186 (611)
Q Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (611)
...+++++..++..+-. ..|. .-......-...+++++..+.=+..-..+...-++.+|...+ +.+.
T Consensus 111 ~i~~~l~Lig~aaDig~---~lgd---~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~-------d~~~ 177 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGL---LLGD---NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARG-------DAKK 177 (498)
T ss_pred HHHHHHhhhhhHhhhhH---HhcC---CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccC-------hhhh
Confidence 66777777776652211 0011 101102223455667777777778878889999999999887 2222
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHh
Q 007262 187 S-FFGWYYATSAIAVVIALTAIVYI 210 (611)
Q Consensus 187 ~-~~~~~~~~~~ig~~l~~~~~~~l 210 (611)
+ +.+++...+.+|+.++...++++
T Consensus 178 ~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 178 TRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hccchhHHHHHHhcceeeeeccccc
Confidence 2 78888889999999998777644
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00023 Score=74.94 Aligned_cols=177 Identities=16% Similarity=0.123 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhH--------HHHHHHHHHH-HHHHHHHHHhhhccCchHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTN--------VLFFWTAATN-FMPILGAFLSDSYLGRFLTIGL 103 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~--------~~~~~~~~~~-~~~~~~G~laD~~~Gr~~~~~~ 103 (611)
++.....-++--+++|+.-.+...-++ .+|+.+.+... ...+...+.. .+..++..+.|++ |||+.-+.
T Consensus 306 Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq~~ 383 (538)
T KOG0252|consen 306 LLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQLM 383 (538)
T ss_pred HHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHHHh
Confidence 333334444455666666544433333 35554443332 2222233333 3666778889996 99999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcch
Q 007262 104 ASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNER 183 (611)
Q Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~ 183 (611)
+.+++.+..+.++..- |+ ..++..+..++.. .+-++.-+...+.-..-+|.||. +
T Consensus 384 GF~~~~i~~~~~~~~y----------~~------~~~~~Gf~v~y~l--~~ff~NFGPn~ttfivpaE~FPa-------r 438 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPY----------NQ------LENTIGFVVLYSL--TFFFGNFGPNATTFIVPAEIFPA-------R 438 (538)
T ss_pred hHHHHHHHHHHHcCCc----------cc------ccccCceeehHHH--HHHHHhcCCCceeEEeehhhchH-------H
Confidence 9998888776666432 11 1122222222222 22234444445555556899999 9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhc-----cccchhhhHHHHHHHHHHHHHHHH
Q 007262 184 VLESFFGWYYATSAIAVVIALTAIVYIQD-----HLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 184 ~r~~~~~~~~~~~~ig~~l~~~~~~~l~~-----~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
.|+.+.++...+.=+|++++.....++.+ ..+.+.+|++.+.+.+++.+..++
T Consensus 439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l 496 (538)
T KOG0252|consen 439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL 496 (538)
T ss_pred HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence 99999999888888999999999999988 678899999888887777665443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0084 Score=66.85 Aligned_cols=151 Identities=7% Similarity=-0.072 Sum_probs=107.0
Q ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChh---hhhHHHHHHHHHHHHHHHHHHHHhhhccCc-hHHHH
Q 007262 27 KGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVA---KGTNVLFFWTAATNFMPILGAFLSDSYLGR-FLTIG 102 (611)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr-~~~~~ 102 (611)
.++.|.+...+++.++....+|.+..+.|......++-+.. +.++....+.++..++.++.|.+.-++ +| |+.++
T Consensus 306 f~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li 384 (599)
T PF06609_consen 306 FKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLI 384 (599)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHH
Confidence 34456677777788888888898888888887777776653 567888888888889999999999876 66 45555
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcc
Q 007262 103 LASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNE 182 (611)
Q Consensus 103 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~ 182 (611)
++.+++.++...++... ..+....+..-++.|+|.|...........-..|+
T Consensus 385 ~~~~~~ta~~Gama~~~---------------------~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~------- 436 (599)
T PF06609_consen 385 FGSVLMTAFCGAMAAVR---------------------PDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPD------- 436 (599)
T ss_pred HHHHHHHHHHHHHHHcc---------------------CCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCc-------
Confidence 66666655444333221 11333345556788899888877777777666676
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 007262 183 RVLESFFGWYYATSAIAVVIALTA 206 (611)
Q Consensus 183 ~~r~~~~~~~~~~~~ig~~l~~~~ 206 (611)
+..+.+.++....-.+|+.++..+
T Consensus 437 ~~ig~a~gL~~s~R~~GGsIg~aI 460 (599)
T PF06609_consen 437 EDIGTATGLTGSIRSIGGSIGYAI 460 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHH
Confidence 788888888777777887766654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0039 Score=50.65 Aligned_cols=67 Identities=12% Similarity=-0.007 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhh
Q 007262 52 TNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTA 119 (611)
Q Consensus 52 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~ 119 (611)
+.+.+.++++.++|.++.+++.+..++++.++.+...++.++. .+++.+..++++..+..+.+++..
T Consensus 12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566788999999999999999999999999999999999985 888999999999888888888765
|
Note that many members are hypothetical proteins. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.025 Score=51.92 Aligned_cols=111 Identities=9% Similarity=0.090 Sum_probs=82.0
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchh
Q 007262 64 LGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQ 143 (611)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (611)
+++.....-.++.+....+.++++..+.+++ |.|+.+.++.+.+.+-...... . +
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-~-----------------------~ 88 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-P-----------------------N 88 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-h-----------------------h
Confidence 3444455556666777888889999999986 9999999998887754433321 1 4
Q ss_pred hHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 007262 144 MTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTA 206 (611)
Q Consensus 144 ~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~ 206 (611)
.+.++.+-++.|+|.+..+.+...++.+..++ +.+++-.+++......+.+.|.++
T Consensus 89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~-------~~~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTE-------ETIGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH-------HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999999998877 666666666555555555555443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.007 Score=63.99 Aligned_cols=184 Identities=15% Similarity=0.088 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
+.+++.+..+....+|++.+.+-.-+ ..-|.+...+|.+.....+++.++.+++|.++||...-|.++++......++.
T Consensus 268 F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~ 346 (480)
T KOG2563|consen 268 FIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT 346 (480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 45556666677777777766543222 34567778899999999999999999999999998444555555555555553
Q ss_pred -HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 113 -FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 113 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
.+..+.. .+ ...+.++..-.+.|...-+..|.-.-+..|..-+..+ +.-.|.
T Consensus 347 ~~l~~~t~-~~-------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSsGl 399 (480)
T KOG2563|consen 347 LMLLTCTL-FL-------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSSGL 399 (480)
T ss_pred HHHHHhhc-cC-------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------ccccee
Confidence 2222222 11 1234455555667777778888888888887766222 223555
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc---chh-hhHHHHHHHHHHHHHHHHhCcccccc
Q 007262 192 YYATSAIAVVIALTAIVYIQDHLG---WKV-GFGVPAILMVLSLLLFFIASPLYVKL 244 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~~~g---w~~-~f~~~~~~~~~~~~~~~~~~~~~~~~ 244 (611)
.+...++-+++-..+.+...+..+ |.. .-+......++..++..+.++.++++
T Consensus 400 l~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 400 LNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred EEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 555556655555666676666655 333 22333333344444445555555443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0033 Score=68.32 Aligned_cols=128 Identities=17% Similarity=0.203 Sum_probs=106.4
Q ss_pred HHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 007262 53 NMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNIL 132 (611)
Q Consensus 53 ~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 132 (611)
.+..|++..++++..+.+...+.......++.++...+--+.+|-|+++.+|++...++....+++.
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~------------- 329 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT------------- 329 (463)
T ss_pred EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc-------------
Confidence 3467888899999999999999999999988888884444445999999999999999999999876
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 133 TQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQ 211 (611)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~ 211 (611)
+.|+.+...++.++ .+...|...++++.+.++ +++++.+++......+.++++|.+-+.+.
T Consensus 330 ----------~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~-------~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 330 ----------ETWMMFAAGVVVAL-AGIVFPAIRAFASILVSP-------EEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred ----------cchhhhHHHHHHHh-hcchhHHHHhHHHhhccc-------ccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 56767777655544 477789999999999999 89999999999999999988888866553
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.012 Score=60.85 Aligned_cols=136 Identities=13% Similarity=0.095 Sum_probs=103.5
Q ss_pred hhhHHHHHHHH-HHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccC-chHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 007262 48 YGLVTNMILYL-MKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLG-RFLTIGLASFCSLLGMFLLWLTAMIPKVK 125 (611)
Q Consensus 48 ~~~~~~~~~yl-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-r~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 125 (611)
|...-+...++ .+.+|+++.|.|.+.+...+.+.+.+..-.+..||..| -+-.+..++.+..-..++...+.
T Consensus 277 ~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~------ 350 (451)
T KOG2615|consen 277 FSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR------ 350 (451)
T ss_pred HHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc------
Confidence 33333333433 56799999999999988888888888888888888733 34444444444444444444433
Q ss_pred CCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH
Q 007262 126 PSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALT 205 (611)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~ 205 (611)
....++.+-.+-.+..+...++...++....|. ++|+...|+....++++-.+||.
T Consensus 351 -----------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~-------~qrG~~~Gi~~Sl~alaRaiGPl 406 (451)
T KOG2615|consen 351 -----------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQ-------SQRGTLNGIFRSLGALARAIGPL 406 (451)
T ss_pred -----------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCc-------ccchHHHHHHHHHHHHHHHhhhh
Confidence 345678888888899999999999999999999 99999999999999999999999
Q ss_pred HHHHhhcc
Q 007262 206 AIVYIQDH 213 (611)
Q Consensus 206 ~~~~l~~~ 213 (611)
+.|.+..+
T Consensus 407 v~g~i~~W 414 (451)
T KOG2615|consen 407 VSGVIFSW 414 (451)
T ss_pred hhheeEEE
Confidence 99887654
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.011 Score=65.73 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=87.9
Q ss_pred HhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhh
Q 007262 393 YDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLA 472 (611)
Q Consensus 393 ~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g 472 (611)
...+..++.+|++|| +.+..++++..++-+..+.. .+++.+...-++.|++
T Consensus 134 G~~i~g~lsD~~GRk-------~~~~~~~~~~~i~~~~~a~a----------------------~~~~~~~~~Rfl~G~~ 184 (521)
T KOG0255|consen 134 GSLIFGPLSDRFGRK-------PVLLVSLLLFIIFGILTAFA----------------------PNYWMFLIFRFLSGFF 184 (521)
T ss_pred HHhhheehHhhcccH-------HHHHHHHHHHHHHHHHHHHh----------------------CcHHHHHHHHHHHHhh
Confidence 333445566665544 34677777777666555554 3778888888999999
Q ss_pred HHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHH
Q 007262 473 EAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSL 552 (611)
Q Consensus 473 ~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~ 552 (611)
..........++.+..+++.|+.+..+ ....+.++.+++.+...+.. +| +..+++..+.++
T Consensus 185 ~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~~~~~~~~~~~ 245 (521)
T KOG0255|consen 185 GSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RWLFWIISIPSG 245 (521)
T ss_pred ccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HHHHHHHHHHHH
Confidence 999999999999999999999999999 77888888888887777653 45 667777776666
Q ss_pred HHHHH
Q 007262 553 VNLVY 557 (611)
Q Consensus 553 v~~~~ 557 (611)
+.+++
T Consensus 246 ~~~~~ 250 (521)
T KOG0255|consen 246 LFLLL 250 (521)
T ss_pred HHHHH
Confidence 66555
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.59 E-value=1.4 Score=47.50 Aligned_cols=185 Identities=10% Similarity=-0.053 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 007262 34 PFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMF 113 (611)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~ 113 (611)
+.+....++.+...=+.---++.|+.+-+.-+---.+..-.+-.+...++.+.-|...||. -|.+++..+.+.--++..
T Consensus 5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv~ 83 (432)
T PF06963_consen 5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSVA 83 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHHH
Confidence 3344444444444444444455666654432333333333334556667777788999996 999998888765333322
Q ss_pred HH----HHhhhcCCCCCCCCCccccCCCCC-CchhhHHHHHH-HHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 114 LL----WLTAMIPKVKPSPCNILTQSCESP-TTAQMTLLISS-FCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 114 ~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
+. ....+.+. ... +......+++. .++..+..=.......+.=-|+...-. .+++..+.+
T Consensus 84 ~s~~~~~~l~~~~~-------------~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~-~~~~~~La~ 149 (432)
T PF06963_consen 84 ASCALFLLLLSYPS-------------SSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIA-GGDPGALAR 149 (432)
T ss_pred HHHHHHHHHHhCCc-------------cccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhc-CCChhhHHH
Confidence 21 11110110 000 01112222222 222222222222333333345544322 111144555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLL 233 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (611)
..+...-.=-+--.++|++.|.+....|.+....+.+...++++.+
T Consensus 150 ~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 150 MNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 4444333334567889999999988888887766666655555543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.047 Score=59.11 Aligned_cols=162 Identities=14% Similarity=0.130 Sum_probs=98.2
Q ss_pred ccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccc
Q 007262 376 GSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVL 455 (611)
Q Consensus 376 ~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (611)
+.+.....++..+..|.++... .|.+ +.++.+..|.+++.++-++....+.. .
T Consensus 74 G~viaa~slg~~i~~liF~~Ws----~k~~------~~k~Pli~s~ii~~~g~llY~~l~~~-----------------~ 126 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWS----NKTG------SVKKPLIVSFLIAIIGNLLYLALAYV-----------------P 126 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccc----cccC------CcccCHHHHHHHHHHHHHHHHHHHhc-----------------c
Confidence 4444556666677766655422 1211 33555899999999998888665410 1
Q ss_pred cchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCc
Q 007262 456 EMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNI 535 (611)
Q Consensus 456 ~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~ 535 (611)
+-..+++....++.|+|.+.. ...=.|+++..-.+.|.++++.....+.+|..+|+.+.+.+.-.-+++- .|.+. +
T Consensus 127 ~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~--~i~~~-~ 202 (488)
T KOG2325|consen 127 NGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGF--MILPG-L 202 (488)
T ss_pred cchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCce--EEcCc-c
Confidence 115677888899999985443 2333444554444556677777777777777777777665543322221 22221 3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 007262 536 NKGRYDNYYWLLAIMSLVNLVYFLVCSWAYGPC 568 (611)
Q Consensus 536 ~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 568 (611)
.-..|...-|+.+.+.++.+++..++.+|..+.
T Consensus 203 ~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 203 IFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred eEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence 333456666777888888888888887775443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.19 Score=55.86 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=87.7
Q ss_pred HHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH--H-HHHHHHHHHhhhcCCCCCCCCC
Q 007262 54 MILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC--S-LLGMFLLWLTAMIPKVKPSPCN 130 (611)
Q Consensus 54 ~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~--~-~i~~~~~~~~~~~~~~~~~~~~ 130 (611)
..-.+.-.+|-+....+.+++++.++..+|..++|+++++. -|+.. .+-+.+ . .++..++..+..+.
T Consensus 37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~-------- 106 (521)
T PRK03612 37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFV-AVELLLALLGGLSALILYAAFAFQ-------- 106 (521)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 44445556888888999999999999999999999887543 22221 111111 1 11111111111000
Q ss_pred ccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007262 131 ILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYI 210 (611)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l 210 (611)
......++...++.++..|+..|....+..+... +.-++..+..|....+|+++|.++.+++
T Consensus 107 ----------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~--------~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 107 ----------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD--------QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 0011223334456677778887777766654322 1234557777888889999999888876
Q ss_pred hc-cccc-hhhhHHHHHHHHHHHHHHHH
Q 007262 211 QD-HLGW-KVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 211 ~~-~~gw-~~~f~~~~~~~~~~~~~~~~ 236 (611)
.- ..|- +..+.+..+-.++++++++.
T Consensus 169 Llp~lG~~~t~~~~a~l~~~~a~~~~~~ 196 (521)
T PRK03612 169 LLPRLGLIRTAALTGSLNLLAALVFLWL 196 (521)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 54 5664 44444444334444333333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.0033 Score=69.92 Aligned_cols=136 Identities=13% Similarity=0.059 Sum_probs=3.0
Q ss_pred cccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhc-----
Q 007262 375 AGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENI----RRRRAIRE----- 445 (611)
Q Consensus 375 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~----~~~~~~~~----- 445 (611)
.+.+...+-+..++...++..+ ++|. ++.+++.+|.++++++.++++.-+-. ........
T Consensus 40 ~G~i~s~~di~~~~~~~~vsy~----g~~~-------hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~ 108 (539)
T PF03137_consen 40 SGLISSSYDIGSLVVVLFVSYF----GGRG-------HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSS 108 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hhhc-------CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccc
Confidence 3455566666666666554432 2331 34556889999999998888766421 11000000
Q ss_pred ---C-c--------c---CCC----CccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHH
Q 007262 446 ---G-Y--------L---NNG----QAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAV 506 (611)
Q Consensus 446 ---~-~--------~---~~~----~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l 506 (611)
. + . +.+ .......++.++++.++.|+|..-.++.+.+|+.+.++++..+.+.|+......+
T Consensus 109 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l 188 (539)
T PF03137_consen 109 ISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL 188 (539)
T ss_dssp -------------------------------------------SSS----------------------------------
T ss_pred cccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence 0 1 0 000 1112334567888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q 007262 507 ANLLASAIVSAVDDI 521 (611)
Q Consensus 507 g~~l~~~i~~~i~~~ 521 (611)
|-++|-.+++...+.
T Consensus 189 GPa~Gf~lg~~~L~~ 203 (539)
T PF03137_consen 189 GPALGFLLGSFCLRI 203 (539)
T ss_dssp ---------------
T ss_pred cHHHHHHHHHHHHhc
Confidence 999998888776654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.093 Score=55.66 Aligned_cols=124 Identities=14% Similarity=0.103 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCch---h
Q 007262 416 RMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKS---M 492 (611)
Q Consensus 416 ~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~---~ 492 (611)
.+.+|.++..+|.+++..... . ...+.+.+...+..++.++++|.++.-|....+..++.+++ .
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~---------~----~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~ 69 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAI---------P----PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR 69 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHT---------S----SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred hhhHHHHHHHHHHHHhHHHHh---------c----chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence 477888888888888655430 0 00012334567888889999999999999999999998876 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 007262 493 SSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYGPC 568 (611)
Q Consensus 493 rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 568 (611)
|..+...+..+-++|..++..+.+.+.+.. + +...|.+.++.++++.+.++...+.++..
T Consensus 70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~~~------~----------~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 70 RDSFFNWFYWGINIGSLFSPTLVPYIQQNY------G----------WFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhHHHHHHHHhhhhHhhcccchhhcccc------c----------hhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 455556677778888888877766654322 2 35678888888888888777666666554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.17 Score=57.34 Aligned_cols=174 Identities=11% Similarity=0.082 Sum_probs=107.9
Q ss_pred cccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh----hcC
Q 007262 375 AGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENI----RRRRAI----REG 446 (611)
Q Consensus 375 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~----~~~~~~----~~~ 446 (611)
.+.+...+-+...+.+.++.. ++.|. .+-+++.+|.++++++.++.++-+-. ...... ..+
T Consensus 134 sG~I~s~~dig~~l~i~fVsY----fG~r~-------HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~ 202 (735)
T KOG3626|consen 134 SGLIASSYDIGNLLLIIFVSY----FGSRG-------HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVEN 202 (735)
T ss_pred ceeEeeecccchhhhhHhHHH----hcccc-------CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccC
Confidence 345555555555555554433 23332 34456889999999998888776422 111100 000
Q ss_pred c-------------------cCCC---CccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHH
Q 007262 447 Y-------------------LNNG---QAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGM 504 (611)
Q Consensus 447 ~-------------------~~~~---~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~ 504 (611)
. ..++ ++.....+..++.+.++.|+|+.-.++.+..|+.+.+.++....+.|+.....
T Consensus 203 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~ 282 (735)
T KOG3626|consen 203 PSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMA 282 (735)
T ss_pred CccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHH
Confidence 0 0011 12233345567788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCC---------CCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007262 505 AVANLLASAIVSAVDDITSKG---------GKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAY 565 (611)
Q Consensus 505 ~lg~~l~~~i~~~i~~~~~~~---------~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 565 (611)
.+|-++|-.++++....+-+- ..+-|+-+ -+.-|++.++++++..+.++++-|+.
T Consensus 283 ~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGA------WWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 283 ILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGA------WWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred HhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhH------HHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 999999988888876544321 01223211 12235556666666666555554443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.44 Score=51.49 Aligned_cols=165 Identities=13% Similarity=0.108 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhCCC----hhhhhHHHHHHHHHHHHHHHHHHHHhhhccCch-------HHHHHHHHHHHHHHHHHHHhh
Q 007262 51 VTNMILYLMKDYHLG----VAKGTNVLFFWTAATNFMPILGAFLSDSYLGRF-------LTIGLASFCSLLGMFLLWLTA 119 (611)
Q Consensus 51 ~~~~~~yl~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~-------~~~~~~~~~~~i~~~~~~~~~ 119 (611)
.+.+..|.++.-+.+ .-...+..+.-.+.-.+..++..++--+. +|+ .-+-+++.+...+.+++....
T Consensus 304 ~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~ 382 (498)
T COG3104 304 GSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAG 382 (498)
T ss_pred cchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 345556665532222 13345666666666667777777777663 443 245556666666665555441
Q ss_pred hcCCCCCCCCCccccCCCC-CCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHH
Q 007262 120 MIPKVKPSPCNILTQSCES-PTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAI 198 (611)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 198 (611)
..- .. .+..+.+.++...+++++|.=+..|...+++....|+ .-.+..++.+......
T Consensus 383 ~~~--------------~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~-------~~~s~~ma~wfLt~a~ 441 (498)
T COG3104 383 IWF--------------GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPP-------ALKSFIMAMWFLTVAA 441 (498)
T ss_pred Hhh--------------cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChH-------HHHHHHHHHHHHHHHH
Confidence 000 11 2345788899999999999999999999999999999 7778888888877778
Q ss_pred HHHHHHHHHHH------hhccccchhhhHHHHHHHHHHHHHHHHh
Q 007262 199 AVVIALTAIVY------IQDHLGWKVGFGVPAILMVLSLLLFFIA 237 (611)
Q Consensus 199 g~~l~~~~~~~------l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (611)
|..++..+.+. ..+.......|+..+...++..+.++..
T Consensus 442 ~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 442 GQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred HHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 88777666552 1122334556666666555444444333
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.3 Score=48.55 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=64.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCch
Q 007262 412 GVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKS 491 (611)
Q Consensus 412 ~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~ 491 (611)
++...+.+|.+...+++......-. +...+.+.|.+.....+.+.+....+.....-..+.+|.
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~---------------~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~- 127 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVS---------------GRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR- 127 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh---------------CccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-
Confidence 5666688899988888877765420 111234566666666666777777777777777788985
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007262 492 MSSIAASLFGLGMAVANLLASAIVSAV 518 (611)
Q Consensus 492 ~rg~~~g~~~~~~~lg~~l~~~i~~~i 518 (611)
.||++.|+.-....+++++-+.+...+
T Consensus 128 ~RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 128 SRGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred ccCceehhhhHHHHhHHHHHHHHHHHH
Confidence 699999999999988888876665443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=94.73 E-value=2 Score=46.46 Aligned_cols=136 Identities=9% Similarity=0.001 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 007262 51 VTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCN 130 (611)
Q Consensus 51 ~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 130 (611)
-+.+..|+..+ |+++...|..=+...+....+..+..++-+|+ |--|+=.+++.....+..++..+-..|.-.
T Consensus 278 ~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~~----- 350 (432)
T PF06963_consen 278 GGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGSP----- 350 (432)
T ss_pred cHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCCC-----
Confidence 44567888876 99999999999999999999999999999997 988888888887776666665443222200
Q ss_pred ccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007262 131 ILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIV 208 (611)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~ 208 (611)
+ ...+...++.+.++-=+|.=++--+..-++.|..|+ ++|+...+.-+...++.-.+...++-
T Consensus 351 -----~---~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~-------~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 351 -----F---SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE-------SERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred -----c---hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH-------HHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 122444555555555577777788888999999998 99999999988888888877765433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=94.65 E-value=5.1 Score=45.81 Aligned_cols=316 Identities=8% Similarity=-0.089 Sum_probs=174.5
Q ss_pred hCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCc
Q 007262 62 YHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTT 141 (611)
Q Consensus 62 ~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (611)
.+...........++.....+.++.....+|-.-|+-..+...++..++..+...+.. ++. .+..
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla-i~a--------------~~~~ 79 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS-FGA--------------IPSS 79 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hcc--------------Cccc
Confidence 3444456677778888888899999999999887777777777667777666665544 111 0111
Q ss_pred hhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-chh--
Q 007262 142 AQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLG-WKV-- 218 (611)
Q Consensus 142 ~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g-w~~-- 218 (611)
.......+..+.+.++.++.-+.-+.+.+++.+.. .++.+.+..+++++..+.+.+. .+++..+..... +..
T Consensus 80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf----~~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~f 154 (654)
T TIGR00926 80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQF----EERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCF 154 (654)
T ss_pred ccchHHHHHHHHHHHHHhhccccccCchhhhHhhc----CccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccc
Confidence 11234455667788889999999999999998873 2334667888999888877764 555555554432 311
Q ss_pred ----hhHHHH-HHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCCCCCCcccccccccCCcccccCchh
Q 007262 219 ----GFGVPA-ILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKL 293 (611)
Q Consensus 219 ----~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (611)
.+.... +.+++.++.++.....++..++.+.....+.++........+
T Consensus 155 g~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~--------------------------- 207 (654)
T TIGR00926 155 GCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR--------------------------- 207 (654)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH---------------------------
Confidence 233333 333333444444433332222222211111111111111000
Q ss_pred hhhhhhhhccCCCCCcCCCCCCCCCCCcch--hhHHHHHHHHHHHHHHHHHhHhHHhhhcCCchhhhhhhcccccCC---
Q 007262 294 RFLNKACLIRNPEQDIAPDGSALNPWSLCT--IEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASSMDRHVT--- 368 (611)
Q Consensus 294 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~--- 368 (611)
+. ....+ ......|.+.. ....++.+...+.+.++...+.+++.+.+ +-++.........
T Consensus 208 ---~~---~~~~~------~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~---~~Q~~s~~~~qa~~m~ 272 (654)
T TIGR00926 208 ---KR---FSTRS------EHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWAL---FDQQGSRWTLQATRMD 272 (654)
T ss_pred ---Hh---hccCC------cccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH---HhcchhHHHHHHHHhc
Confidence 00 00000 00001222111 11123456666777777777777776555 1222222111110
Q ss_pred CccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007262 369 SSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRA 442 (611)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~ 442 (611)
+.+...+.-...++.+-.++.+++...+..++.+++.++ -....++.-+.+.+.++.+.++.........-
T Consensus 273 ~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 273 GDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred CccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111223456777888888888888778888887543 23567788888888888888877775555553
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.25 E-value=11 Score=41.64 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCC-----chhh---------
Q 007262 79 ATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPT-----TAQM--------- 144 (611)
Q Consensus 79 ~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--------- 144 (611)
+..+..++-.+++|++ +|.+++.+....+.....+.++-- .| .++.+|-+..... ..++
T Consensus 71 ~a~~f~~~y~kl~n~~-s~~~lFy~~~~~F~~fF~~f~~vl-yP-----~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~ 143 (491)
T PF03219_consen 71 VAILFTILYSKLSNRL-SREKLFYIIIIPFLGFFALFAFVL-YP-----NRDILHPDAFADKLLAILPPGFKGFIAMFRN 143 (491)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHH-hh-----chhhcCCCHHHHHhhhhccchHHHHHHHHHH
Confidence 4556677789999997 999999887776666555555432 22 1222332211100 0011
Q ss_pred HHHHHHHHHHH-HhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007262 145 TLLISSFCFIS-IGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQD 212 (611)
Q Consensus 145 ~~l~~~~~~~g-lg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~ 212 (611)
|...+.-+..- .|.-...-.-+++..|.++. ++-.+.++.+..+.|+|..++..+..++.+
T Consensus 144 Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~-------~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 144 WTFSLFYVMAELWGSVVLSLLFWGFANEITTV-------EEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 12222223458888999998 888889999999999999999988887776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=3.8 Score=44.50 Aligned_cols=105 Identities=18% Similarity=0.139 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHh---hhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc----ccCCCCCCchhhHHHHHHH
Q 007262 79 ATNFMPILGAFLS---DSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNIL----TQSCESPTTAQMTLLISSF 151 (611)
Q Consensus 79 ~~~~~~~~~G~la---D~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~ 151 (611)
+..++.++.+.++ +++ ||++++.++.++..++.++..+. .| +|- +++.....+.+.....+.-
T Consensus 291 g~v~~g~~~~~l~~rir~f-g~~~~~~~~~~~~~~~~~li~l~--~p-------~dap~~~t~~~~~~~~~~~~~~~ii~ 360 (461)
T KOG3098|consen 291 GEVIGGLDFSILSKRIRGF-GRKPTVLIGIIIHLIGFLLIHLS--FP-------NDAPLRPTDSPPLLFTPSYYLALIIG 360 (461)
T ss_pred HHHHHHHHHHHHhhhhhhc-ccCcchhHHHHHHHHHHHHHhcc--cc-------ccCCCCCCcccccccccchhHHHHHH
Confidence 3444445555555 554 89999999999888887776553 23 222 1223333344454556666
Q ss_pred HHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHH
Q 007262 152 CFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVV 201 (611)
Q Consensus 152 ~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 201 (611)
++.|++-+..+...+..+++.+|+ .|..+++++..-..++..
T Consensus 361 ~l~G~~D~~~~t~~~~ii~~~~~~--------~~~~~fsi~kfyq~~~s~ 402 (461)
T KOG3098|consen 361 FLLGFGDACFNTQRYVIIALLYPD--------DRAQAFSLFKFYQSVASC 402 (461)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcC--------chHHHHHHHHHHHHHHHH
Confidence 789999999999999999999964 345555554444444443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.65 E-value=13 Score=40.49 Aligned_cols=159 Identities=9% Similarity=-0.074 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCCh---hhhhHHHHHHHH-HHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGV---AKGTNVLFFWTA-ATNFMPILGAFLSDSYLGRFLTIGLASFCS 108 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~---~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 108 (611)
.+.+.+.-+|-.+.++.+ --+++.+..+. .....+-+...+ ++.+..++-+++.+++ .|.+++.+-+..+
T Consensus 29 flpl~Ll~f~I~~ny~~l-----R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~~~~F 102 (509)
T COG3202 29 FLPLALLFFCILFNYNLL-----RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYIILGFF 102 (509)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHHHHHH
Confidence 444444445544443222 22456565543 334455555555 6778888889999996 9999998888888
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCccccC----------CCC--------CCchhhHHHHHHHHHHHHhccccchhhhhhhh
Q 007262 109 LLGMFLLWLTAMIPKVKPSPCNILTQS----------CES--------PTTAQMTLLISSFCFISIGAGGIRPCSIAFGA 170 (611)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~--------~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~ 170 (611)
....+++++-- . |.|+.+|.. ++- .+..+...+++.-=+. |.-...-.-+.+..
T Consensus 103 ~~fF~LFa~Vi-~-----P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELW--gslV~S~lFw~faN 174 (509)
T COG3202 103 LGFFALFAFVI-Y-----PYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELW--GSLVLSLLFWQFAN 174 (509)
T ss_pred HHHHHHHHHHH-h-----ccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 77777777543 2 223333332 220 1112223333322222 22222234567788
Q ss_pred cccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007262 171 DQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQD 212 (611)
Q Consensus 171 ~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~ 212 (611)
|++.. ++-.++++.++...|++..++..+..++..
T Consensus 175 eitt~-------~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 175 EITTI-------EEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HhhhH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888 788889999999999999999988888765
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.53 Score=50.02 Aligned_cols=141 Identities=8% Similarity=0.020 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH--HHHHHHH
Q 007262 36 IIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASF--CSLLGMF 113 (611)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~--~~~i~~~ 113 (611)
+..+.+.|.+..-|+...+.. ..+..-...+..+...+|+++-.++.=-.- ++--|++-+.+.+ +..+..+
T Consensus 252 L~lVY~aEY~InqGv~~tl~f--p~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~-----~~rir~lwils~LQ~~nl~~~~ 324 (402)
T PF02487_consen 252 LFLVYFAEYFINQGVAPTLLF--PNSFFSPRDQYRWYQLLYQLGVFISRSSLP-----FFRIRRLWILSLLQVINLVFLL 324 (402)
T ss_pred HHHHHHHHHHHHhchHHHhcC--CccCCCHHHHHHHHHHHHHHHHhhhhccee-----eeehhhHHHHHHHHHHHHHHHH
Confidence 445667776666666554321 112222234556666666666555433221 2122343333322 2222222
Q ss_pred HHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHH
Q 007262 114 LLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYY 193 (611)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (611)
+.+.-..+| +.+..++..+..|+..|..+.+....+.|..++ ++|.-.++...
T Consensus 325 l~s~~~fip--------------------si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~-------~~REFslg~vs 377 (402)
T PF02487_consen 325 LQSWYRFIP--------------------SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPP-------EDREFSLGAVS 377 (402)
T ss_pred HHHHHHHhh--------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCH-------HHHHHHHHHHH
Confidence 222211111 566677777889999999999999999998887 88899999988
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007262 194 ATSAIAVVIALTAIVYI 210 (611)
Q Consensus 194 ~~~~ig~~l~~~~~~~l 210 (611)
.+-++|..++.+++-.+
T Consensus 378 vsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 378 VSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88889998888766544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.32 Score=51.87 Aligned_cols=130 Identities=15% Similarity=0.064 Sum_probs=95.9
Q ss_pred cccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCc-
Q 007262 375 AGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQA- 453 (611)
Q Consensus 375 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 453 (611)
.++++.+.++..++.+|+.+...|++..|++||+ ..+..+..+.++++++.+...++...-+ ++...
T Consensus 69 ~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR------PfI~~~s~~i~~~l~Lig~aaDig~~lg------d~~~~~ 136 (498)
T KOG0637|consen 69 SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR------PFILAGSLLIAVSLFLIGYAADIGLLLG------DNERKP 136 (498)
T ss_pred ccccccccccccceeccccccccccccccccccc------chHHHhhHHHHHHHhhhhhHhhhhHHhc------CCcccc
Confidence 5778889999999999999999999999998774 3467777788888888777654322211 11111
Q ss_pred cccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHH-HHHHHHHHHHHHHHHHHHHHH
Q 007262 454 VLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSI-AASLFGLGMAVANLLASAIVS 516 (611)
Q Consensus 454 ~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~-~~g~~~~~~~lg~~l~~~i~~ 516 (611)
...-.....++.+.+.=++.-....+.=++..+.+..+.+-+ +.+.+-+..++||.+|..+.+
T Consensus 137 ~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 137 VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 112334445666677777787888888899999876666667 999999999999999977654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.88 Score=49.37 Aligned_cols=116 Identities=22% Similarity=0.170 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhcc---CCc
Q 007262 414 KLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSE---FPK 490 (611)
Q Consensus 414 ~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~---~P~ 490 (611)
+.-+.+|.++.+++...++.... ...+.......+++..+|..+.....-+.+.+. -|.
T Consensus 59 ~~Y~~i~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~ 120 (433)
T PF03092_consen 59 KPYMIIGWLLGAVSALVLALLPA------------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE 120 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHhccc------------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence 34456666666555555544420 012333445566777888888888888777775 466
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007262 491 SMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWA 564 (611)
Q Consensus 491 ~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 564 (611)
+ +|..++....++.+|+.++..+++.+.+..+ ++..|.+.+++.++..+..+++.+|
T Consensus 121 ~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~----------------~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 121 S-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG----------------PQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC----------------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence 6 8899999999999999999998887665332 1345666666666666666666665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.15 E-value=1.5 Score=43.50 Aligned_cols=176 Identities=12% Similarity=0.089 Sum_probs=104.9
Q ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChh--hhhHHHHHHHHHHHHHHHHHHHHhhhccCch--HHHHHH
Q 007262 29 GLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVA--KGTNVLFFWTAATNFMPILGAFLSDSYLGRF--LTIGLA 104 (611)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~--~~~~~~ 104 (611)
..|..++.-+-.++|...+--+.-|.| .+.-++. --|.+.+.+.++..++.-+..++..|- ..| ..+.+.
T Consensus 247 D~ki~LLG~iqsLFE~smytFVFLWTP-----aLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqiv 320 (454)
T KOG4332|consen 247 DEKIALLGAIQSLFEGSMYTFVFLWTP-----ALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIV 320 (454)
T ss_pred chHHHHHHHHHHHHhhhhheeeeeecc-----cCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHH
Confidence 334444444556666555433333322 2222222 337777778777777777777776653 221 344444
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchh
Q 007262 105 SFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERV 184 (611)
Q Consensus 105 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (611)
.++......+..+..+ ..++..+...-+++.++.-.+.|.++|...-+=.+..|+ +.
T Consensus 321 f~vs~a~l~Lpilt~~----------------vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPE-------ea 377 (454)
T KOG4332|consen 321 FLVSIAALLLPILTSS----------------VSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPE-------EA 377 (454)
T ss_pred HHHHHHHHHHHHHHhc----------------cCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCH-------HH
Confidence 4444444333333221 112233555557888888899999999999999999999 89
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Q 007262 185 LESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLL 233 (611)
Q Consensus 185 r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (611)
|.+.++++..-.|+-.-++....-.=..-.+-|..|.+|.+...++.+.
T Consensus 378 rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 378 RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence 9999999888877766544322110011245678888888877766554
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=91.90 E-value=4.3 Score=37.22 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007262 458 SAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVS 516 (611)
Q Consensus 458 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~ 516 (611)
+.+.+++.-++.|++..+..+....++.+...++.+++..|++......+..+|..+.-
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888899999999999999999999999999999999999888888888766543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.56 E-value=2.2 Score=43.75 Aligned_cols=119 Identities=17% Similarity=0.045 Sum_probs=67.7
Q ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007262 27 KGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASF 106 (611)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 106 (611)
+...|.++.+...-++...++-|+ .++......++| +... ...++.....+++.+.+-.+ +|-|+++.++..
T Consensus 25 ~~~~knv~i~s~~fl~~f~a~~gl-~nlq~~vn~~lg----~~sl--~~~y~~l~~s~m~~~~~Ir~-~g~K~tm~lav~ 96 (390)
T KOG3097|consen 25 LGILKNVLILSIAFLLTFTAYLGL-QNLQTSVNYDLG----TVSL--GALYLSLIDSSMFMPLLIRF-LGTKWTMVLAVF 96 (390)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhcCcc----cchh--hhhhHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 344566666565444444444333 333333333222 2221 22344445555566666665 599999987765
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCC
Q 007262 107 CSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKD 177 (611)
Q Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~ 177 (611)
...... +.++.- .+..++.+-.+.|+|.+..+..-..|+++.-..+.
T Consensus 97 ~Y~lyi-----A~Nl~p-------------------r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya 143 (390)
T KOG3097|consen 97 PYALYI-----AANLEP-------------------RYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYA 143 (390)
T ss_pred HHHHHH-----Hhhcch-------------------hHHhhccHHHhhccccccccccCcceecHHHHHHH
Confidence 554432 221111 35557777788999999999888888887766643
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.88 E-value=26 Score=36.59 Aligned_cols=45 Identities=24% Similarity=0.206 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHhhhHHHHhhhhHhhhhcc-----CCchhhHHHHHHHH
Q 007262 457 MSAMWLVPQHCLNGLAEAFNAIAQTEFFYSE-----FPKSMSSIAASLFG 501 (611)
Q Consensus 457 ~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~-----~P~~~rg~~~g~~~ 501 (611)
.+...+++.-++.|++..+.++..-++...+ .|++..+.-.+...
T Consensus 119 ~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~t 168 (354)
T PF05631_consen 119 SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLAT 168 (354)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3577788889999999999988877766543 56665555444333
|
|
| >KOG4255 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.46 E-value=38 Score=34.92 Aligned_cols=35 Identities=6% Similarity=0.019 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhH
Q 007262 460 MWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSS 494 (611)
Q Consensus 460 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg 494 (611)
|.+....+..++-....+....-++++.=|.-.++
T Consensus 113 ~afl~L~F~LAivdc~SnVtFLPFMs~lpp~fL~a 147 (439)
T KOG4255|consen 113 WAFLSLLFGLAIVDCTSNVTFLPFMSQLPPAFLNA 147 (439)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhhhCChHHHHH
Confidence 33444445556666666677777766555544443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=87.22 E-value=16 Score=39.64 Aligned_cols=52 Identities=15% Similarity=0.025 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 007262 458 SAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAI 514 (611)
Q Consensus 458 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i 514 (611)
..+..+...++.+++.++.......++. ..|++ .++.....+++++.++..+
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence 4455556667778888888877777765 55654 3444444555555555443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=85.90 E-value=59 Score=35.68 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007262 459 AMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDI 521 (611)
Q Consensus 459 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~ 521 (611)
+..++...++..+.....+....++-.+++-|..-|++|-+.|+..++|+---..++-.+.|.
T Consensus 405 f~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 405 FLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 445666778888889999999999999999999999999999999999987665555444443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=85.84 E-value=5.7 Score=43.23 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=44.9
Q ss_pred hhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccc---CcccchhHHHHHHHHHHHHH
Q 007262 477 AIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSS---NINKGRYDNYYWLLAIMSLV 553 (611)
Q Consensus 477 ~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~---~~~~~~~~~~f~~~~~~~~v 553 (611)
..+.-..+.....++.++-|.-.....++.|-+++-.++-.+.+. +-.++|+.. +-+.-.+..+..+++.+.++
T Consensus 136 DIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~---~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~ 212 (544)
T PF13000_consen 136 DIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSP---DFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLI 212 (544)
T ss_pred CceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCH---HHHHHhcccCCCCCCeeeHHHHHHHHHHHHHH
Confidence 344444455555667777777777777777777776555443321 111133222 21112344455566666666
Q ss_pred HHHHHHHHhhc
Q 007262 554 NLVYFLVCSWA 564 (611)
Q Consensus 554 ~~~~~~~~~~~ 564 (611)
..++..++.+|
T Consensus 213 ~T~~v~~~k~E 223 (544)
T PF13000_consen 213 VTILVAFFKKE 223 (544)
T ss_pred HHHHHheEeec
Confidence 66655555554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=85.72 E-value=29 Score=37.15 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007262 458 SAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDD 520 (611)
Q Consensus 458 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~ 520 (611)
+..++-+.-++.|++... -.+.+++++..+|++.=-++++..-...-+|..++..++-.+..
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666766554 67778999999998888888887777777777777766655543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=84.27 E-value=70 Score=35.10 Aligned_cols=60 Identities=15% Similarity=0.050 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhHHHHhh-hhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007262 461 WLVPQHCLNGLAEAFNAI-AQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDD 520 (611)
Q Consensus 461 ~li~~~~l~g~g~~~~~~-~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~ 520 (611)
.....++...+...+..+ ..+.++.+....++-.+.-++.....++|..+++.+...+.+
T Consensus 130 ~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 130 SFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555554444554 788999999999999999999999999999999988877654
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.67 E-value=40 Score=35.26 Aligned_cols=96 Identities=9% Similarity=0.091 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCccc
Q 007262 458 SAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINK 537 (611)
Q Consensus 458 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~ 537 (611)
+.|+.-..+++...-.++..+....-+.+....+.=|...|++++..-+-..+ +.-++.+..+-+ .+ ...+.
T Consensus 325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsi---lT~iVvd~~g~~-L~--ir~Q~-- 396 (433)
T KOG3810|consen 325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSI---LTLIVVDDRGLG-LD--IRTQF-- 396 (433)
T ss_pred ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHh---heEEEEcccccC-CC--cceeE--
Confidence 56777777777766666666666666655556666677777766654332222 222233322211 00 00000
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 007262 538 GRYDNYYWLLAIMSLVNLVYFLVC 561 (611)
Q Consensus 538 ~~~~~~f~~~~~~~~v~~~~~~~~ 561 (611)
--|..+|.+++++.+++....+..
T Consensus 397 ~~Y~~Yf~v~~~i~~~~~~~~~~~ 420 (433)
T KOG3810|consen 397 VVYSSYFIVLGVIFLIGFGIEYLM 420 (433)
T ss_pred EEEeehHHHHHHHHHHHHHHHHHH
Confidence 124567888888888887764443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 611 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 3e-11 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 315 bits (810), Expect = e-101
Identities = 96/544 (17%), Positives = 197/544 (36%), Gaps = 62/544 (11%)
Query: 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKG------TNVLFFWTAATNFMPIL 86
+P+IIA+EA E+ + YG+ + +LM L + + +V + F P+L
Sbjct: 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLL 73
Query: 87 GAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTL 146
G +++D + G++ TI S +G L + +
Sbjct: 74 GGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE----------------------HSVQG 111
Query: 147 LISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTA 206
+ I++G+GGI+P +F DQ D+ + + + + F +Y T A +
Sbjct: 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSN----KSLAQKAFDMFYFTINFGSFFASLS 167
Query: 207 IVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRK 266
+ + + G V FG+P +LM ++ + F++ Y+ + GF V A +
Sbjct: 168 MPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKV 227
Query: 267 LALPPPNASWC----YHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLC 322
+ I + L A ++
Sbjct: 228 EGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSH 287
Query: 323 TIEQVEELKALIKVLPLWSTGIMMSINISQ-NSFPLLQASSMDRHVTSSFQIPAGSFGTF 381
V+ +++++++L L++ Q S +LQA+ M +
Sbjct: 288 PDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP----QWFEPAMMQAL 343
Query: 382 TIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRR 441
+ + + + VL P +M K L +MG G+ ++ + +V G ++ +
Sbjct: 344 NPLLVMLLIPFNNFVLYPAIERMGVKLTAL---RKMGAGIAITGLSWIVVGTIQLMMDGG 400
Query: 442 AIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFG 501
+ +S W + + L E + EF YS+ PK+M S +
Sbjct: 401 SA-------------LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWT 447
Query: 502 LGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVC 561
L + V NL +V T V + ++ + + A +++ + F +
Sbjct: 448 LSVTVGNLWVLLANVSVKSPTVTEQ---IVQTGMSVTAFQ--MFFFAGFAILAAIVFALY 502
Query: 562 SWAY 565
+ +Y
Sbjct: 503 ARSY 506
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 37/213 (17%), Positives = 72/213 (33%), Gaps = 33/213 (15%)
Query: 36 IIANEAFEKVASYGLVTNMILYLMKDY---HLGVAKGTNVLFF--WTAATNFMPILGAFL 90
+ E +E+ + YG+ ++ Y+ L + + T + + +G F+
Sbjct: 18 LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77
Query: 91 SDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISS 150
+D +G + +LG +L L + L S
Sbjct: 78 ADRIIGARPAVFWGGVLIMLGHIVLALPF-----------------------GASALFGS 114
Query: 151 FCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVIALTAIVYI 210
I IG G ++P D D R ++ F + + IA +
Sbjct: 115 IILIIIGTGFLKPNVSTLVGTLYDEHDR----R-RDAGFSIFVFGINLGAFIAPLIVGAA 169
Query: 211 QDHLGWKVGFGVPAILMVLSLLLFFIASPLYVK 243
Q+ G+ V F + AI M + LL+++ +
Sbjct: 170 QEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 4e-08
Identities = 59/414 (14%), Positives = 116/414 (28%), Gaps = 108/414 (26%)
Query: 176 KDNPNN------ERVLESFFGWYYATSAIAVVI---ALTAIVYIQ--DHLGWKVG----- 219
E VL + + S I ++ +YI+ D L +
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLM--SPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAK 128
Query: 220 FGVPAILMVLSL--LLFFIASPLYVKL-------KASSSLLTGFAQVAVVAYKNRKLALP 270
+ V + L L L + V + K + + V +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK--TWV------ALDVCLSYKVQCKM 180
Query: 271 PPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEEL 330
W + +S P + L L K +P D S+ ++ +
Sbjct: 181 DFKIFWLNLKNCNS----PETVLEMLQKLLYQIDPNWTSRSDHSSNIK------LRIHSI 230
Query: 331 KALIKVLPLWSTGIMMSINISQNSFP--LLQASSMDRHVTSSFQIPAGSFGTFTIITLAA 388
+A ++ L + + LL + +V ++ A + ++T
Sbjct: 231 QAELRRL------------LKSKPYENCLL---VLL-NVQNAKAWNAFNLSCKILLTTRF 274
Query: 389 WVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGM---------------VVSGL 433
V D + + + + + L L + +S +
Sbjct: 275 KQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 434 VENIRRRRAIREGYLNNG----QAVLEMSAMWLVP---QHCLNGLAEAFNAIAQTEFFYS 486
E+IR A + + + ++E S L P + + L ++
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-----SV-------- 380
Query: 487 EFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRY 540
FP S + I L L + I S V + +K K S V +
Sbjct: 381 -FPPS-AHIPTILLSL------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 45/268 (16%), Positives = 78/268 (29%), Gaps = 80/268 (29%)
Query: 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFG 169
+ L +L + +P +S I SI G
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTT------NP------RRLS-----IIAE------SIRDG 340
Query: 170 ADQLDRKDNPNNER---VLESFFGW--------YYATSAI---AVVIALTAIVYIQDHLG 215
D + N ++ ++ES + ++ + I + I
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI----- 395
Query: 216 W--KVGFGVPAI---LMVLSLL-------LFFIASPLYVKLKASSSLLTGFAQVAVVAYK 263
W + V + L SL+ I S +Y++LK + V Y
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENEYALHRSIVDHYN 454
Query: 264 NRK------LALPPPNASWC----YH----RQKDSLLIVPTSKL--RFL-NKACLIRNPE 306
K L P + + +H + + + L RFL K IR+
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK---IRHDS 511
Query: 307 QDIAPDGSALNPWSLCTIEQVEELKALI 334
GS LN T++Q++ K I
Sbjct: 512 TAWNASGSILN-----TLQQLKFYKPYI 534
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 37/241 (15%), Positives = 74/241 (30%), Gaps = 34/241 (14%)
Query: 2 EEAISDQRETRQQEEAANNVQERRRKGGLITMPFI----IANEAFEKVASYGLVTNMILY 57
EE +D + ++ ++ ++ + IAN F + YG++ Y
Sbjct: 220 EEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN-VFVYLLRYGILDWSPTY 278
Query: 58 LMKDYHLGVAK-GTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLW 116
L + H + K + A +L ++SD F +L+ + +
Sbjct: 279 LKEVKHFALDKSSWAYFLYEYAGI-PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV 337
Query: 117 LTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFC-FISIGAGGIRPCSIAFGADQLDR 175
+PT + +++ F + + G+ +A
Sbjct: 338 YWMNP--------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELA-------- 375
Query: 176 KDNPNNERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFF 235
F G V A + Y D GW GF V +L+++L
Sbjct: 376 --PKKAAGTAAGFTGL--FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431
Query: 236 I 236
+
Sbjct: 432 V 432
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 611 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.95 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.94 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.88 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.85 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.45 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.42 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.27 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.14 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.13 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.72 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.08 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=279.22 Aligned_cols=443 Identities=16% Similarity=0.226 Sum_probs=294.1
Q ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----hCCChhhhhHHHHHHHHHHHHHHHHHHHHhhh-ccCchHH
Q 007262 27 KGGLITMPFIIANEAFEKVASYGLVTNMILYLMKD-----YHLGVAKGTNVLFFWTAATNFMPILGAFLSDS-YLGRFLT 100 (611)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~Gr~~~ 100 (611)
+++++.++.+.+..+++.+.+|++..+++.|++++ +|++..+.+++.+++.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 45667788888899999999999999999999998 99999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCC
Q 007262 101 IGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPN 180 (611)
Q Consensus 101 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~ 180 (611)
+.++.++..++.++++++. +.+.++++|+++|+|.+...++..++++|++|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 141 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPF-----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD--- 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCC-----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT---
T ss_pred HHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc---
Confidence 9999999999998888654 56779999999999999999999999999999811
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCcccccc---CCCC-chhHHHHH
Q 007262 181 NERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKL---KASS-SLLTGFAQ 256 (611)
Q Consensus 181 ~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~ 256 (611)
+.|+.++++++...++|..++|.+++++.+..||++.|++.++..+++.++++...++..++ +++. ....+..+
T Consensus 142 --~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
T 4aps_A 142 --RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP 219 (491)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH
T ss_pred --ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHH
Confidence 34788899999999999999999999999999999999998777666655554433322211 1111 11111111
Q ss_pred HHH--------------HHHhhcccCCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcc
Q 007262 257 VAV--------------VAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLC 322 (611)
Q Consensus 257 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 322 (611)
... ........+. .+................. ...|+..
T Consensus 220 ~~~~~g~~l~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 272 (491)
T 4aps_A 220 LLVKVSLAVAGFIAIIVVMNLVGWNSL--------------------PAYINLLTIVAIAIPVFYF-------AWMISSV 272 (491)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHHSSCCT--------------------THHHHHHHHHHHHHHHHHH-------HHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccc--------------------ccchhhhhHHHHHHHHHHH-------HHHhhcc
Confidence 000 0000000000 0000000000000000000 0000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHhhhcC-Cch-hhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHh
Q 007262 323 TIEQVEELKALIKVLPLWSTGIMMSINISQ-NSF-PLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPV 400 (611)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 400 (611)
....+++++......++.....++..+.+ .+. ..+.....+.+. ...+.......+..++..++.+++.+
T Consensus 273 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~-- 344 (491)
T 4aps_A 273 -KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-----FPVSWFQSLNPLFIMLYTPFFAWLWT-- 344 (491)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-----SCSGGGTTHHHHHHHHHHHHHHHHHH--
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-----cCHHHHhccchHHHHHHHHHHHHHHH--
Confidence 00112233333444455555566666665 332 222222222221 34566777777888888887776554
Q ss_pred hhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhh
Q 007262 401 ASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQ 480 (611)
Q Consensus 401 ~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~ 480 (611)
|+++|+ ......+..|.++++++++++...... . ....+.+.+++++.+++.+++.+...+..
T Consensus 345 --r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 407 (491)
T 4aps_A 345 --AWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGAL-------Y------GTSGKVSPLWLVGSWALVILGEMLISPVG 407 (491)
T ss_dssp --HTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHH-------C------CCCTTCCTHHHHHHHHHHHHHHHTTTTHH
T ss_pred --HHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHh-------c------CCCCCccHHHHHHHHHHHHHHHHHHhHHH
Confidence 444442 245666778888888888777655310 0 00123466777888899999999999999
Q ss_pred HhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHH
Q 007262 481 TEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLV 560 (611)
Q Consensus 481 ~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~ 560 (611)
++++.+.+|++.||+++|+.++..++|+.+++.+.+.+.+. .+...|++++++++++.++.++
T Consensus 408 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 408 LSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887775431 1246778888888888887777
Q ss_pred HhhccCc
Q 007262 561 CSWAYGP 567 (611)
Q Consensus 561 ~~~~~~~ 567 (611)
+.++.++
T Consensus 471 ~~~~~~~ 477 (491)
T 4aps_A 471 LSKRIQG 477 (491)
T ss_dssp C------
T ss_pred HHHHHHH
Confidence 7666544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-29 Score=274.34 Aligned_cols=477 Identities=20% Similarity=0.321 Sum_probs=285.4
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhC------CChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYH------LGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTI 101 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~ 101 (611)
++++.++.+.+..++..+++|++..+++.|+++++| ++..+.+++.+++.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 344556667788999999999999999999999999 99999999999999999999999999999944999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCc
Q 007262 102 GLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNN 181 (611)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~ 181 (611)
.++.++..++.+++.++. .+.+.++++|++.|++.+...+...++++|++|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------ 140 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ------ 140 (524)
T ss_dssp HHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST------
T ss_pred HHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc------
Confidence 999999999888877643 1467789999999999999999999999999998
Q ss_pred chhhh---hHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHH
Q 007262 182 ERVLE---SFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVA 258 (611)
Q Consensus 182 ~~~r~---~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (611)
++|+ ..+++++...++|..++|.+++++.+..||++.|++.+++.+++.++++..+++..++++++++..+..+.+
T Consensus 141 -~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (524)
T 2xut_A 141 -SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI 219 (524)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence 5554 455668889999999999999999988999999998887766665555444443332222222111111111
Q ss_pred HHHHhhcccCCCCCCcccccccccCC---cccccCchhhhhhhhh----hccCCCCCcCCCCCCCCCCC-------cchh
Q 007262 259 VVAYKNRKLALPPPNASWCYHRQKDS---LLIVPTSKLRFLNKAC----LIRNPEQDIAPDGSALNPWS-------LCTI 324 (611)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~a~----~~~~~~~~~~~~~~~~~~~~-------~~~~ 324 (611)
....+++..+.+ .. ....+..... ......+....+..+. ...+. ..+.+|+ .++.
T Consensus 220 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 289 (524)
T 2xut_A 220 RSALLTKVEGKG-NI-GLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF--------VGAGASLQLERARKSHPD 289 (524)
T ss_dssp -------CTTHH-HH-HHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH--------HHTGGGTHHHHSCCSCCS
T ss_pred HHHHhhhhcccC-cc-chhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc--------cccchhhHHhhhhccccH
Confidence 111111100000 00 0000000000 0000000000000000 00000 0001110 0000
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHhhhcC-CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhh
Q 007262 325 EQVEELKALIKVLPLWSTGIMMSINISQ-NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASK 403 (611)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~~~~~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r 403 (611)
...+++++.+....++.....++..+.+ .+.+..+....+... + .+.+.+..++.+..++..++.+++..+..+|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (524)
T 2xut_A 290 AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIER 365 (524)
T ss_dssp SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC-------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHh
Confidence 0112234444455555555566666666 444344433332211 1 1344555666667777777777765555555
Q ss_pred hcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhh
Q 007262 404 MKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEF 483 (611)
Q Consensus 404 ~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~ 483 (611)
.+++ .+..+.+.+|+++.++++++++..+.. .......+.+++++.+++.+++++...+..+++
T Consensus 366 ~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 429 (524)
T 2xut_A 366 MGVK---LTALRKMGAGIAITGLSWIVVGTIQLM-------------MDGGSALSIFWQILPYALLTFGEVLVSATGLEF 429 (524)
T ss_dssp --------CCHHHHHTHHHHHHHHHHTTTTTTTT-------------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH-------------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 355666778888888777665543100 000012356677788899999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccc-CcccchhHHHHHHHHHHHHHHHHHHHHHh
Q 007262 484 FYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSS-NINKGRYDNYYWLLAIMSLVNLVYFLVCS 562 (611)
Q Consensus 484 ~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 562 (611)
+.+.+|++.||+++|++++..++|+.+++.+.+.+.+.++ .+|.+. +.+.+ ...|++.++++++++++++++.
T Consensus 430 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 430 AYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMSVT--AFQMFFFAGFAILAAIVFALYA 503 (524)
T ss_dssp HHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccccccccccc--ccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988765321 123221 11111 2337778888888888777777
Q ss_pred hccCccc
Q 007262 563 WAYGPCV 569 (611)
Q Consensus 563 ~~~~~~~ 569 (611)
+++++++
T Consensus 504 ~~~~~~~ 510 (524)
T 2xut_A 504 RSYQMQD 510 (524)
T ss_dssp -------
T ss_pred HHhccch
Confidence 6665443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=251.83 Aligned_cols=434 Identities=11% Similarity=0.022 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHhCC--------ChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcC
Q 007262 51 VTNMILYLMKDYHL--------GVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIP 122 (611)
Q Consensus 51 ~~~~~~yl~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~ 122 (611)
++.....++++++. +..+.+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.++++++....
T Consensus 31 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~ 109 (491)
T 4gc0_A 31 ISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGF 109 (491)
T ss_dssp GGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33344556665532 334668899999999999999999999997 999999999999999999988543100
Q ss_pred CCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHH
Q 007262 123 KVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVI 202 (611)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l 202 (611)
..... .......-..+...++++|+++|+|.|+..+..+.+++|..|+ +.|++..++.+....+|..+
T Consensus 110 ~~~~~-----~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~ 177 (491)
T 4gc0_A 110 TSINP-----DNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLL 177 (491)
T ss_dssp SCSSS-----SSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHH
T ss_pred hhhcc-----hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhh
Confidence 00000 0000000123788899999999999999999999999999999 99999999999999999998
Q ss_pred HHHHHHHhhcc--------ccchhhhHHHHHHHHHHHHHHHHhC--ccccccCCCCchhHHHHHHHHHHHhhcccCCCCC
Q 007262 203 ALTAIVYIQDH--------LGWKVGFGVPAILMVLSLLLFFIAS--PLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPP 272 (611)
Q Consensus 203 ~~~~~~~l~~~--------~gw~~~f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (611)
++.++..+... .+||+.+.+..+..++.++..+..+ |++...+.+.++..+..+.. ..+... .
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~---~~~~~~-~--- 250 (491)
T 4gc0_A 178 VYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI---MGNTLA-T--- 250 (491)
T ss_dssp HHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHH---HHHHHH-H---
T ss_pred hhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHh---cCCchh-H---
Confidence 88776665432 3477666665554444333322221 11111111111111111100 000000 0
Q ss_pred CcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhhhcC
Q 007262 273 NASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQ 352 (611)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q 352 (611)
+. ..+.....+..... .. ......+++......... +..+..
T Consensus 251 ------~~--------~~~~~~~~~~~~~~---------------~~----~~~~~~~~~~~~~~~~~~-----~~~~~~ 292 (491)
T 4gc0_A 251 ------QA--------VQEIKHSLDHGRKT---------------GG----RLLMFGVGVIVIGVMLSI-----FQQFVG 292 (491)
T ss_dssp ------HH--------HHHHHHHHHHHHHH---------------TT----HHHHSCCTHHHHHHHHHH-----HHHHTC
T ss_pred ------HH--------HHHHHHHHHhhhhh---------------hh----HHHHhcccHHHHHHHHHH-----HHHHhh
Confidence 00 00000000000000 00 000000011111111100 000000
Q ss_pred CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 007262 353 NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSG 432 (611)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~ 432 (611)
.+...+.........+ ..............+..++...+... +.+|++|| +.+..+..+++++++.++
T Consensus 293 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----l~dr~Grr-------~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 293 INVVLYYAPEVFKTLG-ASTDIALLQTIIVGVINLTFTVLAIM----TVDKFGRK-------PLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp HHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCSH-------HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhcchHHHHhcC-CCccchhhHHHHHHHHHHHHHHHHHH----HHHhhcCc-------chhccchHHHHHHHHHHH
Confidence 0000000000000010 00000111222222333333333333 44555433 335666666776666655
Q ss_pred HHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Q 007262 433 LVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLAS 512 (611)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~ 512 (611)
.... ........++..+++.........+..+.+..|.+|++.|++++|+.+..+++++++++
T Consensus 361 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~ 423 (491)
T 4gc0_A 361 TAFY-----------------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVS 423 (491)
T ss_dssp HHHH-----------------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-----------------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4420 01112222232333333333445577788999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCCCC
Q 007262 513 AIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGND 581 (611)
Q Consensus 513 ~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (611)
.+.|.+.+... ...+. +....|+++++++++++++.+++.||+|++++||+|+..|++.
T Consensus 424 ~~~p~l~~~~~-------~~~~~---~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 424 WTFPMMDKNSW-------LVAHF---HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp THHHHHCHHHH-------HHHHH---TTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHHHHHHHH-------HHhhh---hhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence 98887654221 00000 1135688899999999999999999999999999988776553
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=247.17 Aligned_cols=404 Identities=11% Similarity=-0.016 Sum_probs=253.4
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
.+++.++.+.+..++.....+.+...++.+ .+++ .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHH
Confidence 345556666666677766666665555544 5567 9999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHH----hhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcch
Q 007262 108 SLLGMFLLWL----TAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNER 183 (611)
Q Consensus 108 ~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~ 183 (611)
..++.+++++ +. +++.++++|+++|++.+...+...+++.|.+|+ +
T Consensus 102 ~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~ 151 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATS-----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------K 151 (451)
T ss_dssp HHHHHHHHHHCHHHHS-----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------T
T ss_pred HHHHHHHHHhhhhccc-----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------h
Confidence 9999999887 55 567799999999999999999999999999999 8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHH
Q 007262 184 VLESFFGWYYATSAIAVVIALTAIVYIQDHLG-WKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAY 262 (611)
Q Consensus 184 ~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (611)
+|++.+++.+...++|..++|.+++++.+..| ||+.|++.+++.++..++.+...++.++.....+. .
T Consensus 152 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------- 220 (451)
T 1pw4_A 152 ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E---------- 220 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T----------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h----------
Confidence 99999999999999999999999999888888 99999998877666555444433322111100000 0
Q ss_pred hhcccCCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHH-HH
Q 007262 263 KNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPL-WS 341 (611)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 341 (611)
+ ..+. .+.+. . +.. ..+..++..........+.++..... ++
T Consensus 221 -~----~~~~-----~~~~~--~--~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (451)
T 1pw4_A 221 -E----YKND-----YPDDY--N--EKA-----------------------EQELTAKQIFMQYVLPNKLLWYIAIANVF 263 (451)
T ss_dssp -T----TCCC---------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHH
T ss_pred -h----hccc-----ccccc--h--hhh-----------------------hcccccccchHHHHHcCHHHHHHHHHHHH
Confidence 0 0000 00000 0 000 00001100000000001222221111 11
Q ss_pred HhHhHHhhhcCCchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHH
Q 007262 342 TGIMMSINISQNSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGL 421 (611)
Q Consensus 342 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~ 421 (611)
............+.++.+....+. ...+.+.....+..++..++..++ .+|+.+ +.++.+.++.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~-----~~~~~~~~~~ 327 (451)
T 1pw4_A 264 VYLLRYGILDWSPTYLKEVKHFAL-------DKSSWAYFLYEYAGIPGTLLCGWM----SDKVFR-----GNRGATGVFF 327 (451)
T ss_dssp HHHHHHHHHHHHHHHBTTBSCCCH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHTST-----TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHhc-----CCchhHHHHH
Confidence 111111111111111111001100 112333444444455555554444 445310 1222344444
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHH
Q 007262 422 FLSC-MGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLF 500 (611)
Q Consensus 422 ~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~ 500 (611)
++.. ++++++... ...+.+.+....++.+++.....+..+.++.+.+|++.||++.|+.
T Consensus 328 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 387 (451)
T 1pw4_A 328 MTLVTIATIVYWMN--------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT 387 (451)
T ss_dssp HHHHHHHHHHTTSC--------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHH
Confidence 4433 444433221 1124555666677778888888888889999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007262 501 GLGMAV-ANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWA 564 (611)
Q Consensus 501 ~~~~~l-g~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 564 (611)
+...++ |..+++.+.+.+.+..+ +...|++.+++.+++.++.++..++
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFFG----------------WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSC----------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----------------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999 99999999998776432 3677888888888887776665443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-24 Score=229.38 Aligned_cols=176 Identities=14% Similarity=0.098 Sum_probs=146.0
Q ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007262 27 KGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASF 106 (611)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 106 (611)
+++++.++.+.+..++..+..+ ....+.+++++++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANN-LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 3445555555555555555554 444455567889999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHH---HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcch
Q 007262 107 CSLLGMFLL---WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNER 183 (611)
Q Consensus 107 ~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~ 183 (611)
+..++.+++ .++. +++.++++|++.|+|.+...+...++++|.+|+ +
T Consensus 100 ~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~ 149 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM-----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------S 149 (438)
T ss_dssp HHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS-------T
T ss_pred HHHHHHHHHHhccccc-----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc-------h
Confidence 999999888 4433 688899999999999999999999999999999 8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhh-cccc-------------------------chhhhHHHHHHHHHHHHHH
Q 007262 184 VLESFFGWYYATSAIAVVIALTAIVYIQ-DHLG-------------------------WKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 184 ~r~~~~~~~~~~~~ig~~l~~~~~~~l~-~~~g-------------------------w~~~f~~~~~~~~~~~~~~ 234 (611)
+|++.+++.+...++|..++|.+++++. +..+ ||+.|++.+.+.++..++.
T Consensus 150 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 150 SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 5544 8999977666555444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=210.82 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 007262 36 IIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLL 115 (611)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~ 115 (611)
+.+..++..+........++. +.+++|.+..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHH
Confidence 344555555555555554544 5678999999999999999999999999999999997 99999999999999999888
Q ss_pred HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHH
Q 007262 116 WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYAT 195 (611)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (611)
.++. +++.+++.|++.|++.+...+...+++.|.+|+ ++|++.+++.+..
T Consensus 83 ~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 132 (375)
T 2gfp_A 83 VTTS-----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYER-------TQLRHANSLLNMG 132 (375)
T ss_dssp HHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SSCCSHHHHHHHH
T ss_pred HHhc-----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH-------HHHHHHHHHHHHH
Confidence 8766 788899999999999999999999999999998 7889999999999
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHH
Q 007262 196 SAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLL 232 (611)
Q Consensus 196 ~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 232 (611)
.++|..++|.+++++.+..+||+.|++.++..++..+
T Consensus 133 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 133 ILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988999999887766554433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=208.52 Aligned_cols=390 Identities=12% Similarity=0.036 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
.+.+....++....+..+..+++.|+++++|++..+.+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~ 87 (417)
T 2cfq_A 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMF 87 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHH
Confidence 44445555566666666678899999999999999999999999999999999999999997 99999998887765432
Q ss_pred HHH---HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 113 FLL---WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 113 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
... .++..+ ...+..++.+.+++.+...+...+.+.+..++. .+.++..+
T Consensus 88 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~ 140 (417)
T 2cfq_A 88 APFFIFIFGPLL----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV-----SRRSNFEF 140 (417)
T ss_dssp HHHHHHTHHHHH----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH-----HHHHTCCH
T ss_pred HHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-----hhhcccch
Confidence 111 111100 001233444555544444444444444444330 03445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCC
Q 007262 190 GWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLAL 269 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (611)
+..+...++|..++|.+++++.+ .+|++.|++.++..++..+..+..+++ .++..+. +
T Consensus 141 g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------------~---- 198 (417)
T 2cfq_A 141 GRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD---APSSATV--------------A---- 198 (417)
T ss_dssp HHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC---CSCSSCS--------------S----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc---ccccccc--------------c----
Confidence 66666778999999999998876 589998887655433332221111111 0000000 0
Q ss_pred CCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhh
Q 007262 270 PPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSIN 349 (611)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (611)
+.. +.++ + +..++.. .+..++ +..+............+..
T Consensus 199 -~~~-----~~~~-----~---------------------------~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~ 238 (417)
T 2cfq_A 199 -NAV-----GANH-----S---------------------------AFSLKLA-LELFRQ-PKLWFLSLYVIGVSCTYDV 238 (417)
T ss_dssp -SSS-----SSCC-----C---------------------------CCCHHHH-HHHTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred -ccc-----cccc-----c---------------------------cccHHHH-HHHhcC-CchhhHHHHHHHHHHHHHH
Confidence 000 0000 0 0000000 000001 1222221111111112222
Q ss_pred hcC--CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHH
Q 007262 350 ISQ--NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMG 427 (611)
Q Consensus 350 ~~q--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~ 427 (611)
+.+ +.+ + ....+... .+ ....+....++.+..++...+..++. +|++ +++.+..+.++++++
T Consensus 239 ~~~~~~~~-~--~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~g~l~----dr~g-------~~~~l~~~~~~~~~~ 302 (417)
T 2cfq_A 239 FDQQFANF-F--TSFFATGE-QG-TRVFGYVTTMGELLNASIMFFAPLII----NRIG-------GKNALLLAGTIMSVR 302 (417)
T ss_dssp HHHHHHHH-H--HHTSSSHH-HH-THHHHHHHHHHHHHHHHHHHHHHHHH----HHHC-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-H--HHHHhccC-CC-hhHHHHHHHHHHHHHHHHHHHHHHHH----HHhc-------HHHHHHHHHHHHHHH
Confidence 222 211 1 11111000 00 00012233334344444445544444 4442 233455666666665
Q ss_pred HHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHH-HHHHHHH
Q 007262 428 MVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASL-FGLGMAV 506 (611)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~l 506 (611)
+++.+.. .+.+.++...++.+++.....+....++.+..|++.||++.++ ++..+++
T Consensus 303 ~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~l 360 (417)
T 2cfq_A 303 IIGSSFA----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL 360 (417)
T ss_dssp HHHHTTC----------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhH
Confidence 5444322 1334444455556666666667778899999999999999998 5888999
Q ss_pred HHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 007262 507 ANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYG 566 (611)
Q Consensus 507 g~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 566 (611)
|+.+++.+.+.+.+..+ +...|.+.+++++++.++.++..++.+
T Consensus 361 g~~~gp~l~G~l~~~~g----------------~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 361 AMIFMSVLAGNMYESIG----------------FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHTHHHHTHHHHSH----------------HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHhhhhHHHHHHhcC----------------cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999998765331 356777888888887776665555433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=8.6e-13 Score=141.25 Aligned_cols=178 Identities=17% Similarity=0.240 Sum_probs=148.7
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhcc--CchHHHHHHHHHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYL--GRFLTIGLASFCS 108 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~--Gr~~~~~~~~~~~ 108 (611)
+.++.+.+..++.....+++..+++.|+++.+|++..+.+++.+...++..++.++.|+++|| + |||+.+.++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 456666777788888888999999999998899999999999999999999999999999999 5 8888888777665
Q ss_pred H-HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 109 L-LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 109 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
. ++.+++.+.. ..+.+.+.+..++.|++.+...+....++.|.+|+ +.|++
T Consensus 331 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~ 382 (451)
T 1pw4_A 331 VTIATIVYWMNP---------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGT 382 (451)
T ss_dssp HHHHHHHTTSCC---------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHH
T ss_pred HHHHHHHHHHhc---------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-------hhhhh
Confidence 5 5544443321 11456677778889999999999999999999999 89999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHh
Q 007262 188 FFGWYYATSAI-AVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIA 237 (611)
Q Consensus 188 ~~~~~~~~~~i-g~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (611)
++++++...++ |..++|.+.|++.+..||+..|++.+++.+++.++.+..
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999998887776666555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-12 Score=136.06 Aligned_cols=167 Identities=10% Similarity=0.047 Sum_probs=135.9
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILY-LMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSL 109 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 109 (611)
+.++..++..++.....+++..+++.| +++.+|++..+++.+.+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 345555666777777788888999999 8888899999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
++.++..+.. +... .+..++.|++.+...|...++..|.+|+ + ++.+.
T Consensus 337 ~~~~~~~~~~-----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~-~~~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAG-----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQ-------D-TKYGS 384 (438)
T ss_dssp HHHHHHHHCC-----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGG-------G-HHHHH
T ss_pred HHHHHHHHcC-----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhccc-------c-ccchh
Confidence 8877766543 3333 3344788899999999999999999987 4 55556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHH
Q 007262 190 GWYYATSAIAVVIALTAIVYIQDHLG-WKVGFGVPAILMVLSL 231 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~ 231 (611)
++.. ...+|..++|.+.|++.+..| ++..|++.+++.++..
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 6554 567999999999999999988 9999988765544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-11 Score=129.65 Aligned_cols=165 Identities=7% Similarity=-0.021 Sum_probs=123.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhCC---ChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHH
Q 007262 41 AFEKVASYGLVTNMILYLMKDYHL---GVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWL 117 (611)
Q Consensus 41 ~~~~~~~~~~~~~~~~yl~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~ 117 (611)
++....++....+++.|+.+.++. +....+.+.++..++..++.+++|+++||+ |||+++.++.++..++.++..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445556688888776653 234456667777778888999999999997 9999998888777776555543
Q ss_pred hhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH-HHHH
Q 007262 118 TAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY-YATS 196 (611)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~ 196 (611)
.. +.+.+++..++.+++.+...+....++.|.+|+ +.|++..+.. +...
T Consensus 309 ~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~ 358 (417)
T 2cfq_A 309 AT-----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFK 358 (417)
T ss_dssp CC-----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHTTTH
T ss_pred hc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHH
Confidence 22 345566666777777777777788999999999 9999998884 6677
Q ss_pred HHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Q 007262 197 AIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 197 ~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
.+|+.++|.++|++.+..|+...|.+.+++.+++.++.+.
T Consensus 359 ~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 359 QLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999998888888888877776666554433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.7e-09 Score=113.58 Aligned_cols=183 Identities=12% Similarity=0.098 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
....+....+..+..+....+...++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHH
Confidence 33333344443333333344445566677888888888888888888999999999999997 99999999988888877
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
+.+........ .....+....+.......+..|..+.+.+|.+|. +.|+++.++.
T Consensus 357 ~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt-------~~R~~~~g~~ 411 (491)
T 4gc0_A 357 FSLGTAFYTQA------------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN-------AIRGKALAIA 411 (491)
T ss_dssp HHHHHHHHTTC------------------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT-------TTHHHHHHHH
T ss_pred HHHHHHHhccc------------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH-------hHHHHHHHHH
Confidence 66654331110 1122122212222222233457778999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc------cccchhhhHHHHHHHHHHHHHHHHhCccc
Q 007262 193 YATSAIAVVIALTAIVYIQD------HLGWKVGFGVPAILMVLSLLLFFIASPLY 241 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~ 241 (611)
+....+|+.+++.+.+.+.+ ..++...|++.+++.+++.++.++..|+.
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 99889999988887776643 23556677777777666666665555543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.7e-10 Score=121.57 Aligned_cols=185 Identities=7% Similarity=0.032 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH-----HHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIG-----LASFC 107 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~-----~~~~~ 107 (611)
.+.+.+...+....++....+++.|+++.++.+..+.+++.+...++..++.++.|+++||+ |||+... ++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44445556666677777788899999998898878888888999999999999999999997 9876544 66666
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
..++.++..+...... .....+.+.+.+..++.|++.+...+...+++.|.+|+ +.|+.
T Consensus 364 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-------~~~g~ 422 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK-------AFNSQ 422 (491)
T ss_dssp HHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-------TCSSS
T ss_pred HHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------HHHHH
Confidence 6666655544320000 00112455677778889999999999999999999999 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCcc
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPL 240 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~ 240 (611)
+.++++...++|..++|.+.+++.+. ++...|.+.+.+.+++.++.+...++
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887764 66777777776666665555554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.5e-09 Score=111.57 Aligned_cols=161 Identities=8% Similarity=-0.000 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH-HHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC-SLL 110 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~-~~i 110 (611)
.++...+..++.....+++..+.+.|+++.+|.+..+.+.+.+...++..++.++.|+++||+ ||+ +..+..+ ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~~ 276 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHH
Confidence 355556667777778888888999999998999999999999999999999999999999997 772 2223222 222
Q ss_pred HHH--HHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhH
Q 007262 111 GMF--LLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188 (611)
Q Consensus 111 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (611)
+.. ...... ..+.+.+++..++.|++.+...+...+++.|.+| +.|+++
T Consensus 277 ~~~~~~~~~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p--------~~~g~~ 327 (375)
T 2gfp_A 277 GLLMWIPDWFG---------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP--------FLAGTA 327 (375)
T ss_dssp SSSSSHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH--------HHHHHH
T ss_pred HHHHHHHhhhc---------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC--------cccchH
Confidence 222 111110 0145566777888999999999999999999886 468999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHH
Q 007262 189 FGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPA 224 (611)
Q Consensus 189 ~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~ 224 (611)
.+..+...++|..++|.+.+.+.+..+|+..+.+.+
T Consensus 328 ~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 328 GALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999999888777877766543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.5e-05 Score=86.62 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=93.4
Q ss_pred cccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc
Q 007262 377 SFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLE 456 (611)
Q Consensus 377 ~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (611)
.+.....+..++..++.+++. +|+. ++++.+.++.++.+++.++.+.. .
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l~----dr~~------g~r~~~~~~~~~~~~~~~~~~~~---------------------~ 106 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWIA----DRFF------GKYNTILWLSLIYCVGHAFLAIF---------------------E 106 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHHH----TTSS------CSHHHHHHHHHHHHHHHHHHHHT---------------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHh------cchHHHHHHHHHHHHHHHHHHHh---------------------c
Confidence 344444445555555555443 4440 23344677777777777666543 1
Q ss_pred chHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHH---HHHHHHHHHHHHHHHHHhhhhhccCCCCcccccc
Q 007262 457 MSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASL---FGLGMAVANLLASAIVSAVDDITSKGGKESWVSS 533 (611)
Q Consensus 457 ~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~ 533 (611)
.+.+.++...++.|++.+...+...+++.+.+|++.|+.+.++ .+...++|..+++.+.+.+.+.. +|
T Consensus 107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~--- 177 (524)
T 2xut_A 107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA--- 177 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH---
T ss_pred ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH---
Confidence 1566677788899999999999999999999999999877776 88888899999988877665422 23
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHH
Q 007262 534 NINKGRYDNYYWLLAIMSLVNLVYFLV 560 (611)
Q Consensus 534 ~~~~~~~~~~f~~~~~~~~v~~~~~~~ 560 (611)
...|++.+++.++.++.+++
T Consensus 178 -------~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 178 -------AVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHS
T ss_pred -------HHHHHHHHHHHHHHHHHHHH
Confidence 56777777666665555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 611 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.39 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.32 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.6e-26 Score=244.99 Aligned_cols=182 Identities=10% Similarity=0.011 Sum_probs=144.9
Q ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007262 29 GLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCS 108 (611)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 108 (611)
+|+.+..+++..++..+... ..+.+.++++ ++|+|.+|.+++.+++.++..++.+++|+++||+ |||+++.++.++.
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~-~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRK-NFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHH
Confidence 45544444444444443333 3345556776 5899999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhH
Q 007262 109 LLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188 (611)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (611)
.++.++++++..... ++..+++.|++.|++.|...+...++++|.+|+ ++|++.
T Consensus 100 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~ 153 (447)
T d1pw4a_ 100 AAVMLFMGFVPWATS-------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGI 153 (447)
T ss_dssp HHHHHHHHHCHHHHS-------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THHHHH
T ss_pred HHHHhhccccchhhh-------------------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh-------hccccc
Confidence 999888876542222 567799999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-ccchhhhHHHHHHHHHHHHHHHHhCc
Q 007262 189 FGWYYATSAIAVVIALTAIVYIQDH-LGWKVGFGVPAILMVLSLLLFFIASP 239 (611)
Q Consensus 189 ~~~~~~~~~ig~~l~~~~~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (611)
+++.+.+.++|..++|.+.+.+... .+|++.|++.+.+.++..++.+...+
T Consensus 154 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 154 VSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 9999999999999999888876654 47999999887766655555444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.2e-22 Score=210.51 Aligned_cols=399 Identities=12% Similarity=0.006 Sum_probs=230.0
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLG 111 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 111 (611)
..|.+.+..++..+.......+++.|+++++|+|.++.|++.+++.++..++.++.|+++||+ ||||+++++..+..++
T Consensus 8 ~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~~ 86 (417)
T d1pv7a_ 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 455556666777777666778899999999999999999999999999999999999999997 9999999998888888
Q ss_pred HHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHH
Q 007262 112 MFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGW 191 (611)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (611)
..+..+..+.+. .....++.+.+.+.+.+...........+..++ ..+++....+.
T Consensus 87 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 142 (417)
T d1pv7a_ 87 FAPFFIFIFGPL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK-----VSRRSNFEFGR 142 (417)
T ss_dssp HHHHHHHTHHHH-------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH-----HHHHHSCCHHH
T ss_pred HHHHHHhhhhhh-------------------HHHHHHHHHHHhhhcccccccchhhcccccccc-----hhhhhHHHHHH
Confidence 777765441110 112233444444444444444444444443333 11344445666
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCCCC
Q 007262 192 YYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPP 271 (611)
Q Consensus 192 ~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (611)
.......+..++|.+++.+.+. +|+..+........+..++.+...++..+.+.+.++.. .. ..
T Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~--~~-- 206 (417)
T d1pv7a_ 143 ARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG-----------AN--HS-- 206 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH-----------SC--CC--
T ss_pred Hhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh-----------hh--cc--
Confidence 6667788888899888888765 44545554444443333333333222211111111000 00 00
Q ss_pred CCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhhhc
Q 007262 272 PNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINIS 351 (611)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (611)
.. .. ... .+..+..+....................
T Consensus 207 ~~-----------------~~---~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T d1pv7a_ 207 AF-----------------SL---KLA-------------------------LELFRQPKLWFLSLYVIGVSCTYDVFDQ 241 (417)
T ss_dssp CC-----------------CH---HHH-------------------------HHHTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-----------------cc---ccc-------------------------ccccccccccchhhhhHHHHHHHHhhhc
Confidence 00 00 000 0000000000001111111111111101
Q ss_pred CCchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHH
Q 007262 352 QNSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVS 431 (611)
Q Consensus 352 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~ 431 (611)
.... .......... . -............+...+. ..+..++.+|. ++.+.+.++.++.+++.++.
T Consensus 242 ~~~~--~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~----~~~~~~l~~r~-------~~~~~~~~~~~~~~~~~~~~ 306 (417)
T d1pv7a_ 242 QFAN--FFTSFFATGE-Q-GTRVFGYVTTMGELLNASI----MFFAPLIINRI-------GGKNALLLAGTIMSVRIIGS 306 (417)
T ss_dssp HHHH--HHTTSSSCHH-H-HHHHHHHHHHHHHHHHHHH----HTTHHHHHHHH-------CHHHHHHHHHHHHHHHHHHH
T ss_pred cccc--cccccccccc-c-chhhhcccccccccccccc----hhhhhhhhccc-------ccccchhhhHHHHHHhhhcc
Confidence 1000 0000000000 0 0000111112222222223 33344444554 34555677777777766665
Q ss_pred HHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHH-HHHHHHHHHH
Q 007262 432 GLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLF-GLGMAVANLL 510 (611)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~l 510 (611)
... .+.+.++...++.+++.+...+....++.+.+|++.||++.|+. ++.+.+|..+
T Consensus 307 ~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 364 (417)
T d1pv7a_ 307 SFA----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364 (417)
T ss_dssp HTC----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHH
T ss_pred ccc----------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 443 25666777788889999999999999999999999999999974 5678899999
Q ss_pred HHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhccCccc
Q 007262 511 ASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYGPCV 569 (611)
Q Consensus 511 ~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~ 569 (611)
++.+.+.+.+..+ +...|++.++++++..++.+++.++.++..
T Consensus 365 ~~~~~G~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (417)
T d1pv7a_ 365 MSVLAGNMYESIG----------------FQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHHSCCSSCTT
T ss_pred HHHHHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 9999998877552 356788888888888888888877655544
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=3.1e-12 Score=133.60 Aligned_cols=180 Identities=18% Similarity=0.136 Sum_probs=139.4
Q ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007262 29 GLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCS 108 (611)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 108 (611)
+.+.++.+....++.....++...+.+.|+.+.++.+..+.++......++..++.+++|+++||+ +|++.........
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 325 (447)
T d1pw4a_ 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFM 325 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHH
T ss_pred cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhH
Confidence 345566667777888888889999999999999999999999999999999999999999999997 8776544443333
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhH
Q 007262 109 LLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188 (611)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (611)
.+........... ...+.+...+..++.|++.++..+....+..|.+|+ +.|+++
T Consensus 326 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~ 380 (447)
T d1pw4a_ 326 TLVTIATIVYWMN------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTA 380 (447)
T ss_dssp HHHHHHHHHTTSC------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHHH
T ss_pred HHHHHHHHHHHhc------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHH
Confidence 3322222221101 112566677777888999999999999999999999 899999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHH
Q 007262 189 FGWYYATSAI-AVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 189 ~~~~~~~~~i-g~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 234 (611)
.++.+...++ |..++|.+.|++.+.+||+..|++...+.+++.+++
T Consensus 381 ~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 427 (447)
T d1pw4a_ 381 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 427 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 9998888877 556789999999999999999888776655554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=1.7e-12 Score=132.86 Aligned_cols=145 Identities=8% Similarity=0.011 Sum_probs=121.5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCch
Q 007262 63 HLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTA 142 (611)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (611)
+.+....+.......++..++..+.+++.||+ |||+++.++.++..++.++..+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 310 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT----------------------- 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC-----------------------
T ss_pred ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc-----------------------
Confidence 34556667777788888899999999999997 999999999998888887777644
Q ss_pred hhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHH-HHHHHHHHHHHHHHHHhhccccchhhhH
Q 007262 143 QMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYY-ATSAIAVVIALTAIVYIQDHLGWKVGFG 221 (611)
Q Consensus 143 ~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~l~~~~~~~l~~~~gw~~~f~ 221 (611)
+.+.+++..++.|++.+...+...+++.|.+|+ +.|++..+..+ ....+|..++|.+.|++.|.+||+..|+
T Consensus 311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~ 383 (417)
T d1pv7a_ 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG-------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 567788888899999999999999999999999 99999999765 4567999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhC
Q 007262 222 VPAILMVLSLLLFFIAS 238 (611)
Q Consensus 222 ~~~~~~~~~~~~~~~~~ 238 (611)
+.+++.++..++..+..
T Consensus 384 ~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 384 VLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 87777666555544433
|