Citrus Sinensis ID: 007267
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 610 | 2.2.26 [Sep-21-2011] | |||||||
| Q758M7 | 756 | Protein transport protein | yes | no | 0.670 | 0.541 | 0.247 | 4e-22 | |
| Q6CPH3 | 760 | Protein transport protein | yes | no | 0.608 | 0.488 | 0.264 | 6e-21 | |
| Q9SFU0 | 1038 | Protein transport protein | no | no | 0.667 | 0.392 | 0.234 | 1e-20 | |
| Q9USS7 | 891 | Uncharacterized protein C | yes | no | 0.591 | 0.405 | 0.242 | 2e-20 | |
| P15303 | 768 | Protein transport protein | yes | no | 0.604 | 0.480 | 0.259 | 6e-19 | |
| Q6BQT6 | 746 | Protein transport protein | yes | no | 0.586 | 0.479 | 0.262 | 8e-19 | |
| Q54U61 | 1013 | Protein transport protein | no | no | 0.580 | 0.349 | 0.234 | 1e-18 | |
| A6QNT8 | 1099 | Protein transport protein | yes | no | 0.593 | 0.329 | 0.253 | 2e-18 | |
| O95486 | 1093 | Protein transport protein | yes | no | 0.593 | 0.331 | 0.251 | 3e-18 | |
| Q3U2P1 | 1090 | Protein transport protein | yes | no | 0.593 | 0.332 | 0.248 | 6e-18 |
| >sp|Q758M7|SEC23_ASHGO Protein transport protein SEC23 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC23 PE=3 SV=1 | Back alignment and function desciption |
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Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 123/496 (24%), Positives = 198/496 (39%), Gaps = 87/496 (17%)
Query: 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAA---PVYGSDGHMLPRCENCYA 58
VR + + FP+ + +P G TP +E PV H C A
Sbjct: 11 GVRFSWNVFPASRTDANKNVVPVGCLYTPLKEIEELAVVSYNPVVCGGPH-------CKA 63
Query: 59 YFNTYCELEQWA--WTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEE 116
N YCE++ + W C LCG+ N L Q A + AE+ S+ + E
Sbjct: 64 VLNPYCEIDVRSNVWACPLCGTRNHLP-QHYANMSQEAMPAELNSTTV------EYITNR 116
Query: 117 TMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIP 176
+Q P++ VD+++ EE L+ + ++ +L +P AL GL T+ + + L+D+
Sbjct: 117 PVQVAPIFFYVVDVTAEEENLQALKDSIITSLSLLPPNALVGLITYGNVVQLHDLSCTAI 176
Query: 177 VVKNVFIPSDTEDTLSLELE-----------------DVMP--LSQFLAPVETFKENITS 217
NVF D E L +E + P L++F P+E + +T
Sbjct: 177 DKCNVF-RGDREYQLQQLVEMLTGEKSGGNLSAGPQMKITPFSLNRFFLPLEHVEFKLTQ 235
Query: 218 ALETLRPTTSWE--------RTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFAL 269
LE LRP W R G+A + +L+ G +A
Sbjct: 236 LLENLRP-DQWTIPPGHRPLRATGSALNIATLLLQGCYRHVA------------------ 276
Query: 270 ARVFAFLSGPPDHGAGQLDTRRYGEQYASKGE-DADRALLPEQT-PFYKDLAAVAVQAGV 327
AR+ F SGP G + + + S + D+D A ++ FY LA A + G
Sbjct: 277 ARICLFASGPGTVAPGMIVSSELKDPLRSHHDIDSDNAKHHKKACKFYNQLAERAAENGH 336
Query: 328 CVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR------PYAFN 381
+DIFA + ++ +K L+ +GG L L + + Q R+ S+ AFN
Sbjct: 337 TIDIFAGCYDQVGMSEMKKLTDSTGGVLLLTDAFSTAIFKQSFIRLFSKDEEGYLTMAFN 396
Query: 382 CIMRLRTSSEFKPGHSYGHFFP-DPQYENVQ------------HIICCDSYATYAYDFDF 428
M ++TS++ K GH P + +NV + + +YA F+
Sbjct: 397 ASMCIKTSADLKLQGLIGHASPVNVDAQNVSDSEIGIGGTSTWKMASLSPHHSYAIFFEI 456
Query: 429 ANAAGFARHTSEQPML 444
AN A A ++P L
Sbjct: 457 ANTAATASLMGDRPKL 472
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Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811) |
| >sp|Q6CPH3|SEC23_KLULA Protein transport protein SEC23 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9USS7|YNB3_SCHPO Uncharacterized protein C4.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC4.03c PE=2 SV=1 | Back alignment and function description |
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| >sp|P15303|SEC23_YEAST Protein transport protein SEC23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC23 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6BQT6|SEC23_DEBHA Protein transport protein SEC23 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q54U61|SEC24_DICDI Protein transport protein SEC24 OS=Dictyostelium discoideum GN=sec24 PE=3 SV=1 | Back alignment and function description |
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| >sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos taurus GN=SEC24A PE=2 SV=1 | Back alignment and function description |
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| >sp|O95486|SC24A_HUMAN Protein transport protein Sec24A OS=Homo sapiens GN=SEC24A PE=1 SV=2 | Back alignment and function description |
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| >sp|Q3U2P1|SC24A_MOUSE Protein transport protein Sec24A OS=Mus musculus GN=Sec24a PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 610 | ||||||
| 225464936 | 744 | PREDICTED: protein transport protein Sec | 0.780 | 0.639 | 0.836 | 0.0 | |
| 147785809 | 746 | hypothetical protein VITISV_037581 [Viti | 0.780 | 0.638 | 0.836 | 0.0 | |
| 359479507 | 760 | PREDICTED: protein transport protein Sec | 0.780 | 0.626 | 0.809 | 0.0 | |
| 359479509 | 740 | PREDICTED: protein transport protein Sec | 0.773 | 0.637 | 0.826 | 0.0 | |
| 224131820 | 744 | predicted protein [Populus trichocarpa] | 0.767 | 0.629 | 0.854 | 0.0 | |
| 255565655 | 740 | expressed protein, putative [Ricinus com | 0.773 | 0.637 | 0.853 | 0.0 | |
| 224104861 | 744 | predicted protein [Populus trichocarpa] | 0.745 | 0.611 | 0.846 | 0.0 | |
| 297822415 | 745 | sec23/sec24 transport family protein [Ar | 0.752 | 0.616 | 0.825 | 0.0 | |
| 18401431 | 745 | sec23/sec24 transport family protein [Ar | 0.752 | 0.616 | 0.821 | 0.0 | |
| 356539252 | 747 | PREDICTED: protein transport protein SEC | 0.786 | 0.642 | 0.804 | 0.0 |
| >gi|225464936|ref|XP_002275292.1| PREDICTED: protein transport protein Sec24-like At3g07100 isoform 1 [Vitis vinifera] gi|296084904|emb|CBI28313.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/478 (83%), Positives = 443/478 (92%), Gaps = 2/478 (0%)
Query: 1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYF 60
MAVRAT+SRFP DPDAQE SGLPWGVTVTPFATKDENG +PVYGSDGH+LPRCENC+AYF
Sbjct: 1 MAVRATMSRFPMDPDAQEGSGLPWGVTVTPFATKDENGNSPVYGSDGHLLPRCENCWAYF 60
Query: 61 NTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQA 120
NTYCELEQWAW CSLCG+LNGL+S+AI RY+ PQSCAEM+SSFIDL+LP+EGSE E MQA
Sbjct: 61 NTYCELEQWAWNCSLCGTLNGLTSEAITRYSQPQSCAEMMSSFIDLELPVEGSEGEAMQA 120
Query: 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKN 180
RPVYVAA+DLSSSEEFLEL +S+L AALEA+ GALFGLATFSHKIGLYDVQG +PVVKN
Sbjct: 121 RPVYVAAIDLSSSEEFLELIKSSLLAALEALGPGALFGLATFSHKIGLYDVQGPVPVVKN 180
Query: 181 VFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDG 240
VF+P+D++ +L +ELEDVMPL FLAPVET K+ I SALETL+PTTSWERT+ A QGLDG
Sbjct: 181 VFVPADSDASLPIELEDVMPLLSFLAPVETCKDRIASALETLKPTTSWERTSAAGQGLDG 240
Query: 241 VLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKG 300
+L+GGRGFG+AME+LFNYLGSEYG+TFALARVFAFLSGPPD+GAGQLDTRRYGEQYASKG
Sbjct: 241 ILLGGRGFGVAMEALFNYLGSEYGSTFALARVFAFLSGPPDYGAGQLDTRRYGEQYASKG 300
Query: 301 EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSS 360
EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFA+TNEYTDLASLKFLSIESGGSLFLYS+
Sbjct: 301 EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAVTNEYTDLASLKFLSIESGGSLFLYSN 360
Query: 361 TDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYA 420
TDDSTLPQD+YRMLSRPYAF CI+RLRTSSEF+PG+SYGHFFPDPQYENVQHIICCDSY
Sbjct: 361 TDDSTLPQDMYRMLSRPYAFGCILRLRTSSEFRPGNSYGHFFPDPQYENVQHIICCDSYV 420
Query: 421 TYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELSSEGLGSVSSALEPSSLQR 478
TYAYDFDFAN GF+RHTSE PMLQIAFQYTVVVPP+ELS+ GSVS++ L+R
Sbjct: 421 TYAYDFDFANTTGFSRHTSEPPMLQIAFQYTVVVPPDELSTP--GSVSASRSKHCLKR 476
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147785809|emb|CAN62128.1| hypothetical protein VITISV_037581 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359479507|ref|XP_003632282.1| PREDICTED: protein transport protein Sec24-like At3g07100 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359479509|ref|XP_003632283.1| PREDICTED: protein transport protein Sec24-like At3g07100 isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224131820|ref|XP_002328116.1| predicted protein [Populus trichocarpa] gi|222837631|gb|EEE75996.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255565655|ref|XP_002523817.1| expressed protein, putative [Ricinus communis] gi|223536905|gb|EEF38543.1| expressed protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224104861|ref|XP_002313596.1| predicted protein [Populus trichocarpa] gi|222850004|gb|EEE87551.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297822415|ref|XP_002879090.1| sec23/sec24 transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297324929|gb|EFH55349.1| sec23/sec24 transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|18401431|ref|NP_565651.1| sec23/sec24 transport family protein [Arabidopsis thaliana] gi|4314388|gb|AAD15598.1| expressed protein [Arabidopsis thaliana] gi|15450830|gb|AAK96686.1| Unknown protein [Arabidopsis thaliana] gi|34098799|gb|AAQ56782.1| At2g27460 [Arabidopsis thaliana] gi|330252905|gb|AEC07999.1| sec23/sec24 transport family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356539252|ref|XP_003538113.1| PREDICTED: protein transport protein SEC24-1-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 610 | ||||||
| TAIR|locus:2038633 | 745 | AT2G27460 "AT2G27460" [Arabido | 0.747 | 0.612 | 0.800 | 2.3e-262 | |
| DICTYBASE|DDB_G0271044 | 782 | DDB_G0271044 "putative protein | 0.208 | 0.162 | 0.355 | 1.4e-41 | |
| FB|FBgn0262126 | 1193 | gho "ghost" [Drosophila melano | 0.239 | 0.122 | 0.346 | 6.8e-17 | |
| TAIR|locus:2098545 | 1038 | ERMO2 "AT3G07100" [Arabidopsis | 0.6 | 0.352 | 0.226 | 1.1e-14 | |
| ZFIN|ZDB-GENE-030131-4487 | 1241 | sec24c "SEC24 family, member C | 0.252 | 0.124 | 0.296 | 4.4e-14 | |
| TAIR|locus:2100202 | 1096 | CEF "AT3G44340" [Arabidopsis t | 0.242 | 0.135 | 0.289 | 4.6e-14 | |
| UNIPROTKB|E1BUD8 | 1119 | SEC24C "Uncharacterized protei | 0.206 | 0.112 | 0.292 | 1.7e-13 | |
| UNIPROTKB|E1BSP8 | 993 | SEC24D "Uncharacterized protei | 0.252 | 0.155 | 0.290 | 2.3e-13 | |
| POMBASE|SPBC4.03c | 891 | SPBC4.03c "COPII-coated vesicl | 0.252 | 0.172 | 0.273 | 2.4e-13 | |
| ZFIN|ZDB-GENE-070117-2501 | 1029 | sec24d "SEC24 family, member D | 0.252 | 0.149 | 0.259 | 2.7e-13 |
| TAIR|locus:2038633 AT2G27460 "AT2G27460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1956 (693.6 bits), Expect = 2.3e-262, Sum P(2) = 2.3e-262
Identities = 365/456 (80%), Positives = 405/456 (88%)
Query: 1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYF 60
MAVRATVSRFP D DAQEASGLPWG+TVTPFA KDENG P GS+GH+LPRCENCYAYF
Sbjct: 1 MAVRATVSRFPIDSDAQEASGLPWGLTVTPFAAKDENGIGPACGSNGHLLPRCENCYAYF 60
Query: 61 NTYCELEQWAWTXXXXXXXXXXXXQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQA 120
NTYCEL+QWAW AIARY++P S EM SSFIDL++PL+GSEEE QA
Sbjct: 61 NTYCELDQWAWNCSLCGTLNGLPSDAIARYSNPHSIPEMTSSFIDLEMPLDGSEEEMTQA 120
Query: 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKN 180
RPVYVAA+D+SSSEEFLELT+SAL AALEA+ GALFGL TFSHKIGLYDVQG IPVVKN
Sbjct: 121 RPVYVAAIDISSSEEFLELTKSALLAALEALSPGALFGLVTFSHKIGLYDVQGPIPVVKN 180
Query: 181 VFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDG 240
VFIP D E +LSLELEDVMPL QFLAPVET K+ I +ALETLRP TSWER+AGA QG+D
Sbjct: 181 VFIPPDGESSLSLELEDVMPLLQFLAPVETCKDRIAAALETLRPITSWERSAGAGQGMDS 240
Query: 241 VLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKG 300
VLMGGRGFG AME+LFNYLGSE+GNTFALARVFAFLSGPPD+G GQLDT RYGEQYASK
Sbjct: 241 VLMGGRGFGTAMEALFNYLGSEFGNTFALARVFAFLSGPPDYGRGQLDTSRYGEQYASKR 300
Query: 301 EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSS 360
DADRALLPEQTPFYKDLA +AVQ+GVCVD+FA+TNEYTDLASLKFLSIESGGSLFLYSS
Sbjct: 301 VDADRALLPEQTPFYKDLATIAVQSGVCVDLFAVTNEYTDLASLKFLSIESGGSLFLYSS 360
Query: 361 TDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYA 420
TDDSTLPQD++RML+RPYAFNC++RLRTS+EFKPG+S+GHFFPDPQYEN+QHIICCDSYA
Sbjct: 361 TDDSTLPQDMFRMLNRPYAFNCVLRLRTSTEFKPGNSFGHFFPDPQYENLQHIICCDSYA 420
Query: 421 TYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPP 456
TYAYDF+FA+ GF+RH+ EQP++QIAFQYTVVVPP
Sbjct: 421 TYAYDFEFADNTGFSRHSGEQPVVQIAFQYTVVVPP 456
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| DICTYBASE|DDB_G0271044 DDB_G0271044 "putative protein transport protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| FB|FBgn0262126 gho "ghost" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| TAIR|locus:2098545 ERMO2 "AT3G07100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030131-4487 sec24c "SEC24 family, member C (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| TAIR|locus:2100202 CEF "AT3G44340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BUD8 SEC24C "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BSP8 SEC24D "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| POMBASE|SPBC4.03c SPBC4.03c "COPII-coated vesicle component Sfb3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-070117-2501 sec24d "SEC24 family, member D (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00037343001 | SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (744 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 610 | |||
| cd01468 | 239 | cd01468, trunk_domain, trunk domain | 8e-54 | |
| pfam04811 | 241 | pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | 2e-23 | |
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 3e-23 | |
| COG5047 | 755 | COG5047, SEC23, Vesicle coat complex COPII, subuni | 3e-18 | |
| cd01479 | 244 | cd01479, Sec24-like, Sec24-like: Protein and membr | 6e-17 | |
| cd01478 | 267 | cd01478, Sec23-like, Sec23-like: Protein and membr | 1e-14 | |
| PLN00162 | 761 | PLN00162, PLN00162, transport protein sec23; Provi | 6e-13 | |
| pfam04810 | 39 | pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | 2e-08 | |
| pfam08033 | 86 | pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom | 2e-04 |
| >gnl|CDD|238745 cd01468, trunk_domain, trunk domain | Back alignment and domain information |
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Score = 183 bits (466), Expect = 8e-54
Identities = 79/263 (30%), Positives = 121/263 (46%), Gaps = 33/263 (12%)
Query: 119 QARPVYVAAVDLSSS---EEFLELTRSALQAALEAVP--SGALFGLATFSHKIGLYDVQG 173
PV+V +D+S E L+ + +L A+L+ +P A GL T+ + Y++
Sbjct: 1 PQPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSS 60
Query: 174 AIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAG 233
+ K +++ SD +D + +FL P+ K+ I LE L P T
Sbjct: 61 DLAQPK-MYVVSDLKDVF------LPLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPT-- 111
Query: 234 AAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYG 293
R G A+++ F L TFA R+ F G P G G+L +R
Sbjct: 112 --------HRPERCLGPALQAAFLLLKG----TFAGGRIIVFQGGLPTVGPGKLKSREDK 159
Query: 294 EQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGG 353
E S + LL T FYK LA V++G+CVD+FA + +Y D+A+LK L+ +GG
Sbjct: 160 EPIRS---HDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTGG 216
Query: 354 SLFLYSS----TDDSTLPQDIYR 372
++LY S D S QD+ R
Sbjct: 217 QVYLYDSFQAPNDGSKFKQDLQR 239
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COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins. Length = 239 |
| >gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | Back alignment and domain information |
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| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
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| >gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
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| >gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
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| >gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
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| >gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional | Back alignment and domain information |
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| >gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | Back alignment and domain information |
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| >gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 610 | |||
| PLN00162 | 761 | transport protein sec23; Provisional | 100.0 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 100.0 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| KOG1986 | 745 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 100.0 | |
| COG5047 | 755 | SEC23 Vesicle coat complex COPII, subunit SEC23 [I | 100.0 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 100.0 | |
| cd01478 | 267 | Sec23-like Sec23-like: Protein and membrane traffi | 100.0 | |
| cd01479 | 244 | Sec24-like Sec24-like: Protein and membrane traffi | 100.0 | |
| cd01468 | 239 | trunk_domain trunk domain. COPII-coated vesicles c | 100.0 | |
| PF04811 | 243 | Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I | 100.0 | |
| PF08033 | 96 | Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP | 99.62 | |
| PF04810 | 40 | zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: | 99.51 | |
| PRK13685 | 326 | hypothetical protein; Provisional | 98.91 | |
| cd01453 | 183 | vWA_transcription_factor_IIH_type Transcription fa | 98.88 | |
| cd01451 | 178 | vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch | 98.85 | |
| cd01456 | 206 | vWA_ywmD_type VWA ywmD type:Von Willebrand factor | 98.83 | |
| cd01466 | 155 | vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact | 98.82 | |
| cd01465 | 170 | vWA_subgroup VWA subgroup: Von Willebrand factor t | 98.82 | |
| cd01463 | 190 | vWA_VGCC_like VWA Voltage gated Calcium channel li | 98.76 | |
| cd01467 | 180 | vWA_BatA_type VWA BatA type: Von Willebrand factor | 98.65 | |
| cd01452 | 187 | VWA_26S_proteasome_subunit 26S proteasome plays a | 98.63 | |
| cd01472 | 164 | vWA_collagen von Willebrand factor (vWF) type A do | 98.62 | |
| TIGR00868 | 863 | hCaCC calcium-activated chloride channel protein 1 | 98.58 | |
| PF13768 | 155 | VWA_3: von Willebrand factor type A domain | 98.5 | |
| cd01480 | 186 | vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI | 98.5 | |
| TIGR03436 | 296 | acidobact_VWFA VWFA-related Acidobacterial domain. | 98.44 | |
| cd01470 | 198 | vWA_complement_factors Complement factors B and C2 | 98.43 | |
| cd01461 | 171 | vWA_interalpha_trypsin_inhibitor vWA_interalpha tr | 98.41 | |
| PF13519 | 172 | VWA_2: von Willebrand factor type A domain; PDB: 3 | 98.39 | |
| cd01474 | 185 | vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi | 98.28 | |
| cd01471 | 186 | vWA_micronemal_protein Micronemal proteins: The To | 98.27 | |
| cd01469 | 177 | vWA_integrins_alpha_subunit Integrins are a class | 98.2 | |
| cd01482 | 164 | vWA_collagen_alphaI-XII-like Collagen: The extrace | 98.18 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 98.12 | |
| cd01450 | 161 | vWFA_subfamily_ECM Von Willebrand factor type A (v | 98.06 | |
| TIGR03788 | 596 | marine_srt_targ marine proteobacterial sortase tar | 98.04 | |
| cd01477 | 193 | vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand | 98.04 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 98.01 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 97.91 | |
| smart00327 | 177 | VWA von Willebrand factor (vWF) type A domain. VWA | 97.88 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 97.85 | |
| cd01481 | 165 | vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V | 97.85 | |
| PTZ00441 | 576 | sporozoite surface protein 2 (SSP2); Provisional | 97.83 | |
| cd01476 | 163 | VWA_integrin_invertebrates VWA_integrin (invertebr | 97.81 | |
| PF00092 | 178 | VWA: von Willebrand factor type A domain; InterPro | 97.81 | |
| COG1240 | 261 | ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis | 97.8 | |
| cd00198 | 161 | vWFA Von Willebrand factor type A (vWA) domain was | 97.74 | |
| cd01464 | 176 | vWA_subfamily VWA subfamily: Von Willebrand factor | 97.67 | |
| PF00626 | 76 | Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel | 97.66 | |
| cd01454 | 174 | vWA_norD_type norD type: Denitrifying bacteria con | 97.45 | |
| PF04056 | 193 | Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro | 97.37 | |
| cd01473 | 192 | vWA_CTRP CTRP for CS protein-TRAP-related protein: | 97.28 | |
| cd01458 | 218 | vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter | 97.24 | |
| COG4245 | 207 | TerY Uncharacterized protein encoded in toxicity p | 97.23 | |
| cd01462 | 152 | VWA_YIEM_type VWA YIEM type: Von Willebrand factor | 97.09 | |
| smart00262 | 90 | GEL Gelsolin homology domain. Gelsolin/severin/vil | 96.55 | |
| KOG2884 | 259 | consensus 26S proteasome regulatory complex, subun | 96.04 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 95.42 | |
| cd01455 | 191 | vWA_F11C1-5a_type Von Willebrand factor type A (vW | 94.93 | |
| cd01457 | 199 | vWA_ORF176_type VWA ORF176 type: Von Willebrand fa | 94.37 | |
| smart00187 | 423 | INB Integrin beta subunits (N-terminal portion of | 93.05 | |
| COG5148 | 243 | RPN10 26S proteasome regulatory complex, subunit R | 91.94 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 89.12 | |
| PF03850 | 276 | Tfb4: Transcription factor Tfb4; InterPro: IPR0046 | 88.87 | |
| TIGR00578 | 584 | ku70 ATP-dependent DNA helicase ii, 70 kDa subunit | 88.46 | |
| KOG2353 | 1104 | consensus L-type voltage-dependent Ca2+ channel, a | 87.84 | |
| COG2425 | 437 | Uncharacterized protein containing a von Willebran | 86.01 | |
| PF00362 | 426 | Integrin_beta: Integrin, beta chain; InterPro: IPR | 83.22 | |
| KOG2807 | 378 | consensus RNA polymerase II transcription initiati | 82.64 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 82.17 | |
| TIGR00627 | 279 | tfb4 transcription factor tfb4. This family is bas | 80.78 |
| >PLN00162 transport protein sec23; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-113 Score=970.71 Aligned_cols=583 Identities=24% Similarity=0.347 Sum_probs=497.0
Q ss_pred eeecccCccCCCHHHHHhcCCceeeEEccCCCCCCCCCCCcccCCCCCCCcCcCcCeeEecCceEeC--ceeEEcCCCCC
Q 007267 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGSL 79 (610)
Q Consensus 2 ~vR~t~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~~~~~~~~~~~~~RC~~C~ayiNp~~~~~~--~~w~C~~C~~~ 79 (610)
|||+|||+||.++.++++++|||||+||||++.++ +| .+ ...|+||++|+|||||||+|+. ++|+||||+..
T Consensus 11 gvR~s~n~~P~t~~~~~~~~iPlg~v~tPl~~~~~--vp-~v---~~~pvRC~~CraylNPf~~~d~~~~~W~C~~C~~~ 84 (761)
T PLN00162 11 GVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLPE--LP-VL---PYDPLRCRTCRAVLNPYCRVDFQAKIWICPFCFQR 84 (761)
T ss_pred ceEeeeecCCCCHHHHhcCCCCeEEEEecCCcCCC--CC-cC---CCCCCccCCCcCEECCceEEecCCCEEEccCCCCC
Confidence 79999999999999999999999999999998753 33 33 2479999999999999999993 79999999999
Q ss_pred CCCChhhhcccCCCcCcccc--ccccEEEEecCCCCccccCCCCcEEEEEEeCCCChhHHHHHHHHHHHHHHhCCCCcEE
Q 007267 80 NGLSSQAIARYTHPQSCAEM--ISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALF 157 (610)
Q Consensus 80 N~~p~~~~~~~~~~~~~pEL--~~~tvey~~p~~y~~~~~~~~~p~~vFvID~s~~~~~l~~l~~~l~~~l~~lp~~~~V 157 (610)
|++|++|.. ..+...+||| .++||||.+|+ |.. .++.||+|+||||+|..+++++.+|++|+++|+.||++++|
T Consensus 85 N~~P~~Y~~-~~~~~~p~EL~p~~~TvEY~~p~-~~~--~~~~pp~fvFvID~s~~~~~l~~lk~sl~~~L~~LP~~a~V 160 (761)
T PLN00162 85 NHFPPHYSS-ISETNLPAELFPQYTTVEYTLPP-GSG--GAPSPPVFVFVVDTCMIEEELGALKSALLQAIALLPENALV 160 (761)
T ss_pred CCCchHhcc-cCccCCChhhcCCceeEEEECCC-CCC--CCCCCcEEEEEEecchhHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 999999642 2223446799 78999999997 653 35678999999999999999999999999999999999999
Q ss_pred EEEeecceeEEEEecCCCcceeeeeeCCCCCcccccccccc-----------------------Ccc-CcCccchHhHHH
Q 007267 158 GLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDV-----------------------MPL-SQFLAPVETFKE 213 (610)
Q Consensus 158 glITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~~-----------------------~p~-~~~l~~~~e~~~ 213 (610)
||||||+.||||+|+...+.+.+||. +.+++...++++. +|. ++||+|++||+.
T Consensus 161 GlITF~s~V~~~~L~~~~~~~~~Vf~--g~k~~t~~~l~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~ 238 (761)
T PLN00162 161 GLITFGTHVHVHELGFSECSKSYVFR--GNKEVSKDQILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEF 238 (761)
T ss_pred EEEEECCEEEEEEcCCCCCcceEEec--CCccCCHHHHHHHhccccccccccccccccccccccCCCccceeEEHHHHHH
Confidence 99999999999999887766667775 4444433333322 232 689999999999
Q ss_pred HHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCCCcccccccCc
Q 007267 214 NITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYG 293 (610)
Q Consensus 214 ~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkIi~F~~g~pt~GpG~l~~~~~~ 293 (610)
.|+++||+|+++ .|+..++. ++.||+|+||++|..+|+...++ .||||++|++||||.|||+|+.++.+
T Consensus 239 ~i~~lLe~L~~~-~~~~~~~~--------rp~r~tG~AL~vA~~lL~~~~~~--~gGrI~~F~sgppT~GpG~v~~r~~~ 307 (761)
T PLN00162 239 TLNSALEELQKD-PWPVPPGH--------RPARCTGAALSVAAGLLGACVPG--TGARIMAFVGGPCTEGPGAIVSKDLS 307 (761)
T ss_pred HHHHHHHhhhcc-ccccCCCC--------CCCccHHHHHHHHHHHHhhccCC--CceEEEEEeCCCCCCCCceeeccccc
Confidence 999999999998 57655432 48899999999999999976543 37999999999999999999999999
Q ss_pred CcccCCCc--chhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccCccEEEEeCCCCCCchhHHHH
Q 007267 294 EQYASKGE--DADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIY 371 (610)
Q Consensus 294 ~~~~~~~~--~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~~~l~~dl~ 371 (610)
+.+|++.. ++++++++++.+||++||.+|+++||+||+|+++.+|+|++||+.|++.|||.+++|++|+.++|+++|+
T Consensus 308 ~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~dqvglaem~~l~~~TGG~v~~~~sF~~~~f~~~l~ 387 (761)
T PLN00162 308 EPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSLR 387 (761)
T ss_pred ccccCccccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEccccccCHHHHhhhHhhcCcEEEEeCCcChHHHHHHHH
Confidence 99987553 3456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccC------cceeeEEEEEccCCeeeeeeeeccccCCCC-------------CcceeeeecCCCccEEEEEEEecCC
Q 007267 372 RMLSRP------YAFNCIMRLRTSSEFKPGHSYGHFFPDPQY-------------ENVQHIICCDSYATYAYDFDFANAA 432 (610)
Q Consensus 372 ~~l~~~------~~~~a~lrvr~S~gl~v~~~~G~~~~~~~~-------------~~~~~i~~~~~~~t~a~~fe~~~~~ 432 (610)
|.|+|+ +||+|+||||||+||+|++++|||++..++ .+.|.++++|+++|++|+||+++..
T Consensus 388 r~~~r~~~~~~~~gf~a~~~VrtS~glkv~g~~G~~~s~~~~~~~vsd~~iG~g~T~~w~l~~l~~~~t~av~f~~~~~~ 467 (761)
T PLN00162 388 RVFERDGEGSLGLSFNGTFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSG 467 (761)
T ss_pred HHhcccccccccccceeEEEEEecCCeEEeeeEcCcccccccCCccccccccCCCCceeeecCcCcCCEEEEEEEEcccc
Confidence 999974 799999999999999999999999864332 2359999999999999999998753
Q ss_pred C-cCCCCCCccEEEEEEEeeecCCccccc--cccc---c--c--------------------------------------
Q 007267 433 G-FARHTSEQPMLQIAFQYTVVVPPEELS--SEGL---G--S-------------------------------------- 466 (610)
Q Consensus 433 ~-l~~~~~~~~~iQ~a~~Yt~~~g~~~~~--n~~~---~--s-------------------------------------- 466 (610)
+ .+....+.+|||||++||+.+|+||+| |... . +
T Consensus 468 ~~~~~~~~~~~~iQ~a~lYt~~~G~rRiRV~T~~~~~~~~~~~~~v~~~fDqeA~a~llaR~av~k~~~~~~~d~~r~ld 547 (761)
T PLN00162 468 QSNPQPPGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVEGSSSEELVAGFDQEAAAVVMARLASHKMETEEEFDATRWLD 547 (761)
T ss_pred ccCCCCCCceEEEEEEEEEEcCCCCEEEEEEccccCccCCCCHHHHHHhcCHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 1 111235679999999999999999887 2110 0 0
Q ss_pred -----------ccccCChhhhHh----hhccccc-----------ccCCCCCCCcccccccchhhhcCC-----------
Q 007267 467 -----------VSSALEPSSLQR----AVYPLLT-----------SYSTPDKQAFPRHSLSRAALITSG----------- 509 (610)
Q Consensus 467 -----------~~~~~~~~~~~~----~~yP~l~-----------~~~spde~~~~~~~l~r~~~~~s~----------- 509 (610)
.|++.++.++++ .+||+|| +|.||||++|+|+.++|+++.++.
T Consensus 548 ~~li~~~~~f~~Yrk~~~~s~~Lp~~~~~lP~f~~~LrRS~~l~~~n~spDera~~r~~l~~~~~~~sl~mI~P~L~sy~ 627 (761)
T PLN00162 548 RALIRLCSKFGDYRKDDPSSFRLSPNFSLYPQFMFNLRRSQFVQVFNNSPDETAYFRMMLNRENVTNSLVMIQPTLISYS 627 (761)
T ss_pred HHHHHHHHHHhhhcccCCccccCCHHHHHHHHHHHHHhhhhhccCCCCCchHHHHHHHHHhcCCHHHHHHhhCCeEEEec
Confidence 078888888776 7899999 488999999999999998663322
Q ss_pred -----------------CcEEEEecCcEEEEEecCCCCC--CCCCC-CChhHHHHHHH-------HHHHhcCCCCceEEE
Q 007267 510 -----------------SPIFLLDAFTTIIVFYSSTADP--TLPFP-PPQDCLLRTTI-------NKMKQERSITPKLIF 562 (610)
Q Consensus 510 -----------------~~iyllD~g~~~~i~~G~~v~~--~~~~~-~~~~~~~~~~i-------~~i~~~r~~~p~l~~ 562 (610)
++|||||+||+++||+|++|++ +++|| +|+++++++++ ++|.++|+|+||+++
T Consensus 628 ~~~~P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~~~Rfp~Pr~i~ 707 (761)
T PLN00162 628 FNGPPEPVLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIKERFPVPRLVV 707 (761)
T ss_pred CCCCCcceecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHHhcCCCCCeEEE
Confidence 6999999999999999999999 88898 89999998888 688899999999999
Q ss_pred EeCCCCcHHHHHhhccCCCCCC------CCCC--cccccHHHHHHHHHHHHHH
Q 007267 563 IRGGQDDATIFENYLIEEQDVD------GSGL--TSVMGFVSFLEEISQSVVE 607 (610)
Q Consensus 563 ~~~~~~~~~~f~~~LveD~~~~------~~~~--~~~~sy~dfl~~lh~~i~~ 607 (610)
|+||+||+||+++||++..+.+ |+.+ +++.|+..|+.||+|.+++
T Consensus 708 ~~~~~SqaRfl~~klnPs~~~~~~~~~~~~~~~~tdd~sl~~f~~~l~~~~v~ 760 (761)
T PLN00162 708 CDQHGSQARFLLAKLNPSATYNSANAMGGSDIIFTDDVSLQVFMEHLQRLAVQ 760 (761)
T ss_pred eCCCCcHHHHHHHhcCCcccccCCCCCCCCCeeecCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999986532 2222 5789999999999998764
|
|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01468 trunk_domain trunk domain | Back alignment and domain information |
|---|
| >PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PRK13685 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme | Back alignment and domain information |
|---|
| >cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) | Back alignment and domain information |
|---|
| >cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta | Back alignment and domain information |
|---|
| >cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins | Back alignment and domain information |
|---|
| >cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins | Back alignment and domain information |
|---|
| >TIGR00868 hCaCC calcium-activated chloride channel protein 1 | Back alignment and domain information |
|---|
| >PF13768 VWA_3: von Willebrand factor type A domain | Back alignment and domain information |
|---|
| >cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain | Back alignment and domain information |
|---|
| >cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation | Back alignment and domain information |
|---|
| >cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) | Back alignment and domain information |
|---|
| >PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A | Back alignment and domain information |
|---|
| >cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax | Back alignment and domain information |
|---|
| >cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell | Back alignment and domain information |
|---|
| >cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration | Back alignment and domain information |
|---|
| >cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
| >cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >TIGR03788 marine_srt_targ marine proteobacterial sortase target protein | Back alignment and domain information |
|---|
| >cd01477 vWA_F09G8-8_type VWA F09G8 | Back alignment and domain information |
|---|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
| >smart00327 VWA von Willebrand factor (vWF) type A domain | Back alignment and domain information |
|---|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
| >cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >PTZ00441 sporozoite surface protein 2 (SSP2); Provisional | Back alignment and domain information |
|---|
| >cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions | Back alignment and domain information |
|---|
| >PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma | Back alignment and domain information |
|---|
| >COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] | Back alignment and domain information |
|---|
| >cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases | Back alignment and domain information |
|---|
| >PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex | Back alignment and domain information |
|---|
| >cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology | Back alignment and domain information |
|---|
| >cd01458 vWA_ku Ku70/Ku80 N-terminal domain | Back alignment and domain information |
|---|
| >COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >smart00262 GEL Gelsolin homology domain | Back alignment and domain information |
|---|
| >KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
| >cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) | Back alignment and domain information |
|---|
| >COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair | Back alignment and domain information |
|---|
| >TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) | Back alignment and domain information |
|---|
| >KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ] | Back alignment and domain information |
|---|
| >KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR00627 tfb4 transcription factor tfb4 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 610 | ||||
| 1m2o_A | 768 | Crystal Structure Of The Sec23-Sar1 Complex Length | 3e-15 | ||
| 2qtv_A | 772 | Structure Of Sec23-Sar1 Complexed With The Active F | 4e-15 | ||
| 3egd_B | 748 | Crystal Structure Of The Mammalian Copii-Coat Prote | 5e-15 | ||
| 2nup_B | 753 | Crystal Structure Of The Human Sec23a24A HETERODIME | 5e-15 | ||
| 3eh1_A | 751 | Crystal Structure Of The Human Copii-Coat Protein S | 1e-14 | ||
| 1pcx_A | 810 | Crystal Structure Of The Copii Coat Subunit, Sec24, | 6e-14 | ||
| 1m2v_B | 926 | Crystal Structure Of The Yeast Sec2324 HETERODIMER | 8e-14 | ||
| 3eh2_A | 766 | Crystal Structure Of The Human Copii-Coat Protein S | 1e-12 | ||
| 2nup_A | 769 | Crystal Structure Of The Human Sec23a24A HETERODIME | 7e-11 | ||
| 3eg9_A | 764 | Crystal Structure Of The Mammalian Copii-Coat Prote | 7e-11 | ||
| 3efo_A | 765 | Crystal Structure Of The Mammalian Copii-Coat Prote | 2e-10 | ||
| 3efo_B | 770 | Crystal Structure Of The Mammalian Copii-Coat Prote | 6e-09 |
| >pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 | Back alignment and structure |
|
| >pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 | Back alignment and structure |
| >pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 | Back alignment and structure |
| >pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 | Back alignment and structure |
| >pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 | Back alignment and structure |
| >pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 | Back alignment and structure |
| >pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 | Back alignment and structure |
| >pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 | Back alignment and structure |
| >pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 | Back alignment and structure |
| >pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 | Back alignment and structure |
| >pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 | Back alignment and structure |
| >pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 | Back alignment and structure |
|---|
Score = 240 bits (612), Expect = 6e-70
Identities = 94/490 (19%), Positives = 166/490 (33%), Gaps = 61/490 (12%)
Query: 3 VRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNT 62
VR + + +PS +P TP + + P + + C A N
Sbjct: 21 VRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDL---PPIQYEPVL-CSRTTCRAVLNP 76
Query: 63 YCELEQWA--WTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQA 120
C+++ A W C+ C N + AE++ F ++ + Q
Sbjct: 77 LCQVDYRAKLWACNFCYQRNQFPPSYAGI-SELNQPAELLPQFSSIEYVVL----RGPQM 131
Query: 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKN 180
+++ VD +E L+ + ++Q +L +P AL GL TF + ++++
Sbjct: 132 PLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSY 191
Query: 181 VF------------------IPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETL 222
VF T+ T +++ P ++FL PV+ N+T L L
Sbjct: 192 VFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGEL 251
Query: 223 RPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDH 282
+ W G R G+A+ L + NT A R+ F+ GP
Sbjct: 252 QRD-PWPVPQGKRPL--------RSSGVALSIAVGLLECTFPNTGA--RIMMFIGGPATQ 300
Query: 283 GAGQLDTRRYGEQYASKGE--DADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTD 340
G G + S + + + + T ++ LA A G +DI+A + T
Sbjct: 301 GPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTG 360
Query: 341 LASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR------PYAFNCIMRLRTSSEFKP 394
L +K +GG + + S + S Q R+ ++ F + ++TS E K
Sbjct: 361 LLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKI 420
Query: 395 GHSYGHFFPDPQYENVQH-------------IICCDSYATYAYDFDFANAAGFARHTSEQ 441
+ G I T A F+ N +
Sbjct: 421 SGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGR 480
Query: 442 PMLQIAFQYT 451
+Q QY
Sbjct: 481 GAIQFVTQYQ 490
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 610 | |||
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 100.0 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 100.0 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 100.0 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 100.0 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 100.0 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 100.0 | |
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 100.0 | |
| 2yrc_A | 59 | Protein transport protein SEC23A; zinc binding, co | 99.41 | |
| 4fx5_A | 464 | VON willebrand factor type A; structural genomics, | 99.15 | |
| 3ibs_A | 218 | Conserved hypothetical protein BATB; structural ge | 98.93 | |
| 4b4t_W | 268 | RPN10, 26S proteasome regulatory subunit RPN10; hy | 98.75 | |
| 1ijb_A | 202 | VON willebrand factor; dinucleotide-binding fold, | 98.65 | |
| 2x5n_A | 192 | SPRPN10, 26S proteasome regulatory subunit RPN10; | 98.56 | |
| 1v7p_C | 200 | Integrin alpha-2; snake venom, C-type lectin, anta | 98.54 | |
| 2b2x_A | 223 | Integrin alpha-1; computational design, antibody-a | 98.52 | |
| 1n3y_A | 198 | Integrin alpha-X; alpha/beta rossmann fold, cell a | 98.52 | |
| 1atz_A | 189 | VON willebrand factor; collagen-binding, hemostasi | 98.49 | |
| 1mf7_A | 194 | Integrin alpha M; cell adhesion; 1.25A {Homo sapie | 98.46 | |
| 1pt6_A | 213 | Integrin alpha-1; cell adhesion; 1.87A {Homo sapie | 98.44 | |
| 2x31_A | 189 | Magnesium-chelatase 60 kDa subunit; ligase, bacter | 98.44 | |
| 1q0p_A | 223 | Complement factor B; VON willebrand factor, MAC-1, | 98.43 | |
| 2odp_A | 509 | Complement C2; C3/C5 convertase, complement serin | 98.43 | |
| 4hqf_A | 281 | Thrombospondin-related anonymous protein, trap; ma | 98.42 | |
| 4hqo_A | 266 | Sporozoite surface protein 2; malaria, gliding mot | 98.37 | |
| 1shu_X | 182 | Anthrax toxin receptor 2; alpha/beta rossmann fold | 98.34 | |
| 1mjn_A | 179 | Integrin alpha-L; rossmann fold, immune system; 1. | 98.31 | |
| 1rrk_A | 497 | Complement factor B; BB, hydrolase; 2.00A {Homo sa | 98.26 | |
| 3n2n_F | 185 | Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho | 98.23 | |
| 3zqk_A | 199 | VON willebrand factor; blood clotting, adamts-13, | 98.14 | |
| 3hrz_D | 741 | Complement factor B; serine protease, glycosilated | 98.09 | |
| 2xgg_A | 178 | Microneme protein 2; A/I domain, cell adhesion, hy | 98.08 | |
| 1jey_B | 565 | KU80; double-strand DNA break repair, non-homologo | 97.82 | |
| 3k6s_A | 1095 | Integrin alpha-X; cell receptor, adhesion molecule | 97.72 | |
| 1kcq_A | 104 | Gelsolin, brevin, ADF, AGEL; alpha-beta structure, | 96.52 | |
| 3rag_A | 242 | Uncharacterized protein; structural genomics, PSI- | 96.39 | |
| 1svq_A | 114 | Severin; actin-binding; NMR {Dictyostelium discoid | 95.8 | |
| 2ww8_A | 893 | RRGA, cell WALL surface anchor family protein; IGG | 95.55 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 95.48 | |
| 3t3p_B | 472 | Integrin beta-3; integrin, cell adhesion, blood cl | 95.21 | |
| 1yvr_A | 538 | RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, | 95.02 | |
| 1jey_A | 609 | KU70; double-strand DNA break repair, non-homologo | 94.86 | |
| 3vi3_B | 454 | Integrin beta-1; beta propeller fold, rossman fold | 94.04 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 92.69 | |
| 3v4v_B | 503 | Integrin beta-7; cell adhesion, madcam-1, membrane | 92.43 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 92.08 | |
| 2nvo_A | 535 | RO sixty-related protein, RSR; alpha helical repea | 91.61 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 91.33 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 90.68 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 88.23 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 88.18 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 86.76 | |
| 3rag_A | 242 | Uncharacterized protein; structural genomics, PSI- | 81.44 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 80.86 |
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-114 Score=988.14 Aligned_cols=570 Identities=20% Similarity=0.372 Sum_probs=493.7
Q ss_pred eeecccCccCCCHHHHHhcCCceeeEEccCCCCCCCCCCCcccC-CCCCCCcCcCcCeeEecCceEeC--ceeEEcCCCC
Q 007267 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGS-DGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGS 78 (610)
Q Consensus 2 ~vR~t~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~~~~~~~-~~~~~~RC~~C~ayiNp~~~~~~--~~w~C~~C~~ 78 (610)
+||+|||+||.+++++++++||||++||||++..+.+.|+++.+ ....|+||++|+|||||||+|+. ++|+||||+.
T Consensus 45 ~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~ 124 (766)
T 3eh2_A 45 YIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSC 124 (766)
T ss_dssp TEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCCBCTTTCCBCCTTCEEEGGGTEEECTTTCC
T ss_pred eEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCCCCCccCCCCCEeCCceEEecCCCEEEeccccc
Confidence 68999999999999999999999999999999876655544443 34679999999999999999984 7999999999
Q ss_pred CCCCChhhhcccC------CCcCccccccccEEEEecCCCCccccCCCCcEEEEEEeCCCCh---hHHHHHHHHHHHHHH
Q 007267 79 LNGLSSQAIARYT------HPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALE 149 (610)
Q Consensus 79 ~N~~p~~~~~~~~------~~~~~pEL~~~tvey~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~l~~~l~~~l~ 149 (610)
.|++|++|++..+ +..+||||++|+|||.+|.+|+.+..++.||+|+||||+|..+ +++++++++|+++|+
T Consensus 125 ~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~ 204 (766)
T 3eh2_A 125 INDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLD 204 (766)
T ss_dssp EEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGG
T ss_pred cCCCCHHHhccccccccccccccCcccccCceeeecCHhhccCCCCCCCCEEEEEEECchhhccchHHHHHHHHHHHHHH
Confidence 9999999876432 2567899999999999999998644577899999999999976 799999999999999
Q ss_pred hCCCC-------cEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccccc-cCcc-CcCccchHhHHHHHHHHHH
Q 007267 150 AVPSG-------ALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSALE 220 (610)
Q Consensus 150 ~lp~~-------~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~-~~p~-~~~l~~~~e~~~~i~~~L~ 220 (610)
.||++ ++|||||||+.||||+++.+..++++++ +.|++| ++|+ ++||+|++||++.|+++|+
T Consensus 205 ~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~v---------v~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~ 275 (766)
T 3eh2_A 205 FLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMV---------VSDVADMFVPLLDGFLVNVNESRAVITSLLD 275 (766)
T ss_dssp GCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEE---------ECCTTTCCCCCCTTSSBCTTTTHHHHHHHHH
T ss_pred hCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEE---------ecChhhhccccccceeEeHHHHHHHHHHHHH
Confidence 99975 8999999999999999998766666643 467777 4686 6899999999999999999
Q ss_pred hcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCC-CCCcccccccCcCcccCC
Q 007267 221 TLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPD-HGAGQLDTRRYGEQYASK 299 (610)
Q Consensus 221 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkIi~F~~g~pt-~GpG~l~~~~~~~~~~~~ 299 (610)
+|++++++.+ .+.+|+|+||++|+.+|+..+ .||||++|++|+|+ .|||+|+.+++++.++
T Consensus 276 ~L~~~~~~~~------------~~~t~~g~al~aa~~~l~~~~----~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~-- 337 (766)
T 3eh2_A 276 QIPEMFADTR------------ETETVFVPVIQAGMEALKAAE----CAGKLFLFHTSLPIAEAPGKLKNRDDRKLIN-- 337 (766)
T ss_dssp HHHHHHTTCC------------CCCCCSHHHHHHHHHHHHHTT----CCEEEEEEECSCCCSSSTTCCCCCCCGGGTT--
T ss_pred hhhhhccCCC------------CCcchHHHHHHHHHHHhccCC----CCcEEEEEecCCCCcCCCcccccccccccCC--
Confidence 9998754332 257899999999999998643 25999999999776 8999999999988875
Q ss_pred CcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccCccEEEEeCCCCC----CchhHHHHHHhc
Q 007267 300 GEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDD----STLPQDIYRMLS 375 (610)
Q Consensus 300 ~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~----~~l~~dl~~~l~ 375 (610)
+|+|+++++++.+||++||++|+++||+||+|+++.+|+|++||+.|++.|||.+++|++|+. ++|.+||.|.++
T Consensus 338 -sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~f~~dl~~~l~ 416 (766)
T 3eh2_A 338 -TDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQ 416 (766)
T ss_dssp -STTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeCCCcchhHHHHHHHHHHHHhh
Confidence 467889999999999999999999999999999999999999999999999999999999975 459999999999
Q ss_pred cCcceeeEEEEEccCCeeeeeeeeccccCCCCCcceeeeecCCCccEEEEEEEecCCCcCCCCCCccEEEEEEEeeecCC
Q 007267 376 RPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVP 455 (610)
Q Consensus 376 ~~~~~~a~lrvr~S~gl~v~~~~G~~~~~~~~~~~~~i~~~~~~~t~a~~fe~~~~~~l~~~~~~~~~iQ~a~~Yt~~~g 455 (610)
+++||+|+||||||+||+|+++|||++.++ .+.|.++++++++|++|+|++++ +++ ....+|||+|++||+.+|
T Consensus 417 ~~~gf~a~mrVR~S~glkv~~~~G~~~~~~--t~~~~l~~i~~d~s~~v~f~~~~--~l~--~~~~~~~Q~allYt~~~G 490 (766)
T 3eh2_A 417 KVVGFDAVMRVRTSTGIRAVDFFGAFYMSN--TTDVELAGLDGDKTVTVEFKHDD--RLN--EESGALLQCALLYTSCAG 490 (766)
T ss_dssp SCEEEEEEEEEEECTTEEEEEEEESCBCSS--SSCEEEEEEETTCCEEEEEEESS--CCC--TTTCEEEEEEEEEECTTS
T ss_pred hcceeeEEEEEEecCCeEEEEeECCeecCC--CCceeeccCCCCceEEEEEEecC--CCC--CCCcEEEEEEEEeEcCCC
Confidence 999999999999999999999999999764 46799999999999999998876 554 257899999999999999
Q ss_pred ccccc--cc------c-------------------------cc-----------------------------c-c-----
Q 007267 456 PEELS--SE------G-------------------------LG-----------------------------S-V----- 467 (610)
Q Consensus 456 ~~~~~--n~------~-------------------------~~-----------------------------s-~----- 467 (610)
+||+| |. + .. + +
T Consensus 491 ~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~~~R~~l~~~~~~~l~~Yrk~~~~~~s~~ql~lp 570 (766)
T 3eh2_A 491 QRRLRIHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASPSSAGQLILP 570 (766)
T ss_dssp CEEEEEEEEEEEEESSHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCC
T ss_pred CEEEEEEEEeeEecCCHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccceecC
Confidence 99887 21 0 00 0 0
Q ss_pred ------------------------------------cccCChhhhHhhhcccccccCCCCCCCcccccccch-hhhcCCC
Q 007267 468 ------------------------------------SSALEPSSLQRAVYPLLTSYSTPDKQAFPRHSLSRA-ALITSGS 510 (610)
Q Consensus 468 ------------------------------------~~~~~~~~~~~~~yP~l~~~~spde~~~~~~~l~r~-~~~~s~~ 510 (610)
++++++..+..++||+|+++|++++.....+..++. ..+++.+
T Consensus 571 ~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~~~~~~~~~P~~v~ls~~~l~~~ 650 (766)
T 3eh2_A 571 ECMKLLPVYLNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPAVRASEERLSNG 650 (766)
T ss_dssp GGGTTHHHHHHHHHTSTTTSCCTTCCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECSSCCCSCC--CCCBCSSGGGCCTT
T ss_pred HHHHHHHHHHHHHHccHhhcCCCCCCccHHHHHHHHHHCCCHHHHHHHHhheEEEeecCCcccccCCCCcCCcHHHcCCC
Confidence 456677778889999999999876654333333444 3367889
Q ss_pred cEEEEecCcEEEEEecCCCCCCCC---------------------CCCChhHHHHHHHHHHHhcCCCCceEEEEeCCCCc
Q 007267 511 PIFLLDAFTTIIVFYSSTADPTLP---------------------FPPPQDCLLRTTINKMKQERSITPKLIFIRGGQDD 569 (610)
Q Consensus 511 ~iyllD~g~~~~i~~G~~v~~~~~---------------------~~~~~~~~~~~~i~~i~~~r~~~p~l~~~~~~~~~ 569 (610)
||||||+|++++||+|.+++++++ ++++.++++|++|+.++++|..+++++++|||++.
T Consensus 651 giyLlD~g~~i~lw~G~~v~~~~l~dlFgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~~~~~~~l~ivr~~~~~ 730 (766)
T 3eh2_A 651 DIYLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKM 730 (766)
T ss_dssp CEEEEECSSEEEEEECTTCCHHHHHHHHSCSSGGGSCTTCCSCCCCSSHHHHHHHHHHHHHHTTSSSCCEEEEEESSSST
T ss_pred cEEEEEcCcEEEEEecCCCCHHHHHHHcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCh
Confidence 999999999999999999988533 46889999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHHHHHhhC
Q 007267 570 ATIFENYLIEEQDVDGSGLTSVMGFVSFLEEISQSVVEYMK 610 (610)
Q Consensus 570 ~~~f~~~LveD~~~~~~~~~~~~sy~dfl~~lh~~i~~~l~ 610 (610)
|.+|.++||||++.+|+ +||+|||+||||+|+++|.
T Consensus 731 ~~~f~~~LvED~~~~~~-----~SY~dfL~~lh~~i~~~l~ 766 (766)
T 3eh2_A 731 EMLFKHFLVEDKSLSGG-----ASYVDFLCHMHKEIRQLLS 766 (766)
T ss_dssp HHHHHTTCTTSCCTTTC-----CCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCcccCCCCCC-----CCHHHHHHHHHHHHHHhcC
Confidence 99999999999997665 8999999999999999873
|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A | Back alignment and structure |
|---|
| >4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} | Back alignment and structure |
|---|
| >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C | Back alignment and structure |
|---|
| >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A | Back alignment and structure |
|---|
| >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A | Back alignment and structure |
|---|
| >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G | Back alignment and structure |
|---|
| >1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A | Back alignment and structure |
|---|
| >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* | Back alignment and structure |
|---|
| >4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A | Back alignment and structure |
|---|
| >4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* | Back alignment and structure |
|---|
| >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* | Back alignment and structure |
|---|
| >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... | Back alignment and structure |
|---|
| >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A | Back alignment and structure |
|---|
| >3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* | Back alignment and structure |
|---|
| >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* | Back alignment and structure |
|---|
| >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} | Back alignment and structure |
|---|
| >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* | Back alignment and structure |
|---|
| >3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A | Back alignment and structure |
|---|
| >2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* | Back alignment and structure |
|---|
| >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A | Back alignment and structure |
|---|
| >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B | Back alignment and structure |
|---|
| >3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 610 | ||||
| d2qtva3 | 271 | c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar | 2e-50 | |
| d1pd0a3 | 252 | c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar | 5e-40 | |
| d1pd0a2 | 177 | b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast | 5e-11 | |
| d1pd0a5 | 85 | g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha | 5e-05 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 173 bits (440), Expect = 2e-50
Identities = 64/280 (22%), Positives = 101/280 (36%), Gaps = 36/280 (12%)
Query: 122 PVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNV 181
P++ VDL+S E L+ + ++ +L +P AL GL T+ + + L+D+ NV
Sbjct: 3 PIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNV 62
Query: 182 FIPSDTEDTLSLE---------------------LEDVMPLSQ--FLAPVETFKENITSA 218
F +L + V P S F P+E + +
Sbjct: 63 FRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQL 122
Query: 219 LETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSG 278
LE L P W AG R G A+ L Y N A R+ F SG
Sbjct: 123 LENLSPD-QWSVPAGH--------RPLRATGSALNIASLLLQGCYKNIPA--RIILFASG 171
Query: 279 PPDHGAGQLDTRRYGEQYASK--GEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITN 336
P G + + S + + FY +A G VDIFA
Sbjct: 172 PGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCY 231
Query: 337 EYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR 376
+ ++ +K L+ +GG L L + + Q R+ ++
Sbjct: 232 DQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK 271
|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 610 | |||
| d2qtva3 | 271 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1pd0a3 | 252 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1pd0a5 | 85 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.83 | |
| d1pd0a4 | 173 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.8 | |
| d2qtva5 | 75 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.75 | |
| d2qtva4 | 142 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.7 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.65 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.4 | |
| d1atza_ | 184 | von Willebrand factor A3 domain, vWA3 {Human (Homo | 98.29 | |
| d1n3ya_ | 189 | Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI | 98.26 | |
| d1shux_ | 181 | Capillary morphogenesis protein 2 domain {Human (H | 98.22 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.21 | |
| d1q0pa_ | 209 | Complement factor B domain {Human (Homo sapiens) [ | 98.18 | |
| d1ijba_ | 202 | von Willebrand factor A1 domain, vWA1 {Human (Homo | 98.08 | |
| d1v7pc_ | 193 | Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId | 98.02 | |
| d1mf7a_ | 194 | Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub | 98.0 | |
| d1pt6a_ | 192 | Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId | 97.91 | |
| d1jeyb2 | 236 | Ku80 subunit N-terminal domain {Human (Homo sapien | 97.69 | |
| d2qtva1 | 103 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 97.68 | |
| d1jeya2 | 220 | Ku70 subunit N-terminal domain {Human (Homo sapien | 97.68 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 97.57 | |
| d1mjna_ | 179 | Integrin CD11a/CD18 (Leukocyte function associated | 97.53 | |
| d1tyeb2 | 248 | Integrin beta A domain {Human (Homo sapiens) [TaxI | 97.24 | |
| d1kcqa_ | 104 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 96.82 | |
| d1j72a2 | 116 | Macrophage capping protein Cap G {Human (Homo sapi | 96.49 | |
| d1svya_ | 102 | Severin, domain 2 {Dictyostelium discoideum [TaxId | 96.19 | |
| d2fh1a3 | 113 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 96.14 | |
| d1yvra2 | 174 | 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c | 96.04 | |
| d2fh1a2 | 96 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 95.06 | |
| d1j72a3 | 107 | Macrophage capping protein Cap G {Human (Homo sapi | 93.92 | |
| d1d0na3 | 121 | Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | 93.86 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-47 Score=384.81 Aligned_cols=245 Identities=26% Similarity=0.387 Sum_probs=206.6
Q ss_pred CcEEEEEEeCCCChhHHHHHHHHHHHHHHhCCCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCC------------
Q 007267 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTE------------ 188 (610)
Q Consensus 121 ~p~~vFvID~s~~~~~l~~l~~~l~~~l~~lp~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~------------ 188 (610)
||+||||||+|.++.+++.++++|.++|+.||++++|||||||+.||||+++.......+++.+....
T Consensus 2 Pp~yvFvIDvs~~a~~~~~l~~~l~~~l~~lp~~~~VgiITfd~~v~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~~~~~ 81 (271)
T d2qtva3 2 PPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQ 81 (271)
T ss_dssp CCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEECSCSSCCEEEEEESSSCCCHHHHHHHHHCC
T ss_pred CCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCcCccceeccCccccCHHHHHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999998777677776532110
Q ss_pred ---------cccccccccc-Ccc-CcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHH
Q 007267 189 ---------DTLSLELEDV-MPL-SQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFN 257 (610)
Q Consensus 189 ---------~~~~~dl~~~-~p~-~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ 257 (610)
..++.|+++. .|. ++||+|++|+++.|+++|++|++. .|..+.+ .++.||+|+||++|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~e~~~~i~~lL~~L~~~-~~~~~~~--------~~~~~~~G~Al~~A~~ 152 (271)
T d2qtva3 82 KPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPD-QWSVPAG--------HRPLRATGSALNIASL 152 (271)
T ss_dssp C-----------------CCTTCGGGGSEEHHHHHHHHHHHHHHCCCC-CCCCCTT--------BCCCCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccCCccccccccHHHHHHHHHHHHHHhccC-cccCCCC--------CCcccchHHHHHHHHH
Confidence 0133344443 343 689999999999999999999876 4443332 2478999999999999
Q ss_pred hhccccCCCcccceEEEEecCCCCCCCcccccccCcCcccCCCc-ch-hhccCCcchHHHHHHHHHHHHcCcEEEEEEec
Q 007267 258 YLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGE-DA-DRALLPEQTPFYKDLAAVAVQAGVCVDIFAIT 335 (610)
Q Consensus 258 lL~~~~~~~~~~GkIi~F~~g~pt~GpG~l~~~~~~~~~~~~~~-~~-e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~ 335 (610)
+|++...+ .||||++|++|+||.|||+|+.+++++.+|++.+ ++ ++++++++.+||++||.+|+++||+||+|+++
T Consensus 153 ll~~~~~~--~gGkI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~~isvDlF~~s 230 (271)
T d2qtva3 153 LLQGCYKN--IPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGC 230 (271)
T ss_dssp HHHHHCTT--SCEEEEEEESSCCCSSSSCSSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred HHHhhccC--CCcEEEEEeCCCCCCCCccccccccccccCCccchhhhhhhhhhhHHHHHHHHHHHHHHCCeEEEEEEec
Confidence 99864222 2699999999999999999999999999987532 33 45688999999999999999999999999999
Q ss_pred CCCcChhcchhhhccCccEEEEeCCCCCCchhHHHHHHhcc
Q 007267 336 NEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR 376 (610)
Q Consensus 336 ~~~~~l~~l~~l~~~TGG~v~~~~~~~~~~l~~dl~~~l~~ 376 (610)
.+|+|++||++|++.|||.+++|++|+.+.|+++|+|+|+|
T Consensus 231 ~~~~dl~~l~~l~~~TGG~v~~~~~F~~~~f~~~l~r~~~r 271 (271)
T d2qtva3 231 YDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK 271 (271)
T ss_dssp SSCCSHHHHTHHHHTTTCCEEEESCTTSHHHHHHHHHTTCB
T ss_pred CccCChHHHHhHHhhCCceEEEeCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999975
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| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
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| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
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| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
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