Citrus Sinensis ID: 007344

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------
Protein Sequence
MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKKPKYQQLELPNPEQTQQKIQLEPLETDLPPEKEQIKSTRQVESESPPLDMYNLEGL
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHcccccccccEEEEEEEEccEEccccccEEEEEEEcccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHcccEEEEccccEEEEccccccHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
EccccccHHHHHHHHcccccccccEEEEEEEEEccccccHHHEEEEEEEEcccccccEEEHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHccccccccccccccccEEEEEHHHHcccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHcccccccccccHHHHHHHHcHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccccHcccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHccEEEEEccEEHHHHHccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccEEccccccHHEEEEEEHcHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccHHHccccccccccccccccccccccccccccccccEEccc
Coil and Loop (DISEMBL)
MGPSGSGKTTLLNVLAGqlmasprlhlsgllevngkpssnkayKFAYVRQEDLFFSQLTVRETLSLAAElqlpeilsveERDEYVNSLLFKLGLVscadsnvgdakvrgisggeKKRLSLACELiaspsviyadepttgldaFQAEKVMEALRQLAQDGHTVicsihqprgsvyfkfddivlltegklvyagpardeplayfsrfgytcpdhvnpaEFLADLISVDYSSAESVYLSQKRIDSLAESFLQRSstilyasplisregykkskLQKRTIVKKKGGWWRQFWLLLRRAWMQasrdgptnkVRARMSIASAIIFGSVFwrmgrsqtsIQDRMGLLQVAAINTAMAALTKTvgvfpkeraivdrerakgsyalgPYLLSKLIaeipvgaafplmfgavlypmarlhptlsrfgkfCGIVTVESFAASAMGLtvgamvptteaamavgpSLMTVFIVFGGyyvnadntpiifrwipRVSLIRWAFQGLCinefsglqfdhqhsfdIQTGEQALERLsfggsrisdTVMAQSRILLFWYCTTYLLlekkkpkyqqlelpnpeqtqqkiqlepletdlppekeqikstrqvesesppldmynlegl
Flexible Loop (DISEMBL)
MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVscadsnvgdakvrgisggekkRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRIDSLAESFLQRsstilyasplisregykksklqkrtivkkkggwwrQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAAltktvgvfpkeraivdrerakgsYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKKPKYQQLELPNPEQTQQKiqlepletdlppEKEQikstrqvesesppldmynlegl
Low Complexity Region (SEG)
MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKKPKYQQLELPNPEQTQQKIQLEPLETDLPPEKEQIKSTRQVESESPPLDMYNLEGL
Disordered region (IsUnstruct)
**********LLNVLAGQLMASPRLHLSGLLEVNG****NKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLE**********************************************************
Disordered Region (DISOPRED)
MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI*S*EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVD**************DSLAES**********************************GGWWRQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKK*************************************************YNLEG*
Disordered Region (DISEMBL)
********TTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKKPKYQQLELPNPEQTQQKIQLEPLETDLPPEKE*************PLDMYNLEGL
Disordered Region (DISPRO)
****GSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRIDSLAESFLQRSSTILYA**LISREGYKKSKLQ*RTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKKPKYQQ**************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKKPKYQQLELPNPEQTQQKIQLEPLETDLPPEKEQIKSTRQVESESPPLDMYNLEGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	607	2.2.26 [Sep-21-2011]
Q9ZU35	725	ABC transporter G family	yes	no	1.0	0.837	0.798	0.0
Q05360	677	Protein white OS=Lucilia	N/A	no	0.802	0.719	0.315	3e-74
Q8RWI9	691	ABC transporter G family	no	no	0.840	0.738	0.322	9e-74
P10090	687	Protein white OS=Drosophi	yes	no	0.897	0.793	0.307	2e-73
Q17320	679	Protein white OS=Ceratiti	N/A	no	0.899	0.804	0.298	3e-73
Q7XA72	672	ABC transporter G family	no	no	0.815	0.736	0.332	9e-73
Q27256	695	Protein white OS=Anophele	yes	no	0.813	0.710	0.311	4e-72
Q9DBM0	673	ATP-binding cassette sub-	yes	no	0.846	0.763	0.304	1e-71
P58428	694	ATP-binding cassette sub-	yes	no	0.830	0.726	0.307	3e-70
Q11180	598	ABC transporter ATP-bindi	yes	no	0.853	0.866	0.311	5e-70

>sp|Q9ZU35|AB7G_ARATH ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1

 Score = 1008 bits (2606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/619 (79%), Positives = 542/619 (87%), Gaps = 12/619 (1%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           MGPSGSGKTTLLNVLAGQL  SPRLHLSGLLEVNGKPSS+KAYK A+VRQEDLFFSQLTV
Sbjct: 107 MGPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKPSSSKAYKLAFVRQEDLFFSQLTV 166

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           RETLS AAELQLPEI S EERDEYVN+LL KLGLVSCADS VGDAKVRGISGGEKKRLSL
Sbjct: 167 RETLSFAAELQLPEISSAEERDEYVNNLLLKLGLVSCADSCVGDAKVRGISGGEKKRLSL 226

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           ACELIASPSVI+ADEPTTGLDAFQAEKVME L++LAQDGHTVICSIHQPRGSVY KFDDI
Sbjct: 227 ACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYAKFDDI 286

Query: 181 VLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRI 240
           VLLTEG LVYAGPA  EPL YF  FG+ CP+HVNPAEFLADLISVDYSS+E+VY SQKR+
Sbjct: 287 VLLTEGTLVYAGPAGKEPLTYFGNFGFLCPEHVNPAEFLADLISVDYSSSETVYSSQKRV 346

Query: 241 DSLAESFLQRSSTILYASPLISREGYKKS-KLQKRTIVKKKGGWWRQFWLLLRRAWMQAS 299
            +L ++F QRSS++LYA+PL  +E  K   + +++ IV++  GWWRQF+LLL+RAWMQAS
Sbjct: 347 HALVDAFSQRSSSVLYATPLSMKEETKNGMRPRRKAIVERTDGWWRQFFLLLKRAWMQAS 406

Query: 300 RDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 359
           RDGPTNKVRARMS+ASA+IFGSVFWRMG+SQTSIQDRMGLLQVAAINTAMAALTKTVGVF
Sbjct: 407 RDGPTNKVRARMSVASAVIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 466

Query: 360 PKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKF 419
           PKERAIVDRER+KGSY+LGPYLLSK IAEIP+GAAFPLMFGAVLYPMARL+PTLSRFGKF
Sbjct: 467 PKERAIVDRERSKGSYSLGPYLLSKTIAEIPIGAAFPLMFGAVLYPMARLNPTLSRFGKF 526

Query: 420 CGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 479
           CGIVTVESFAASAMGLTVGAMVP+TEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP
Sbjct: 527 CGIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 586

Query: 480 RVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLF 539
           R SLIRWAFQGLCINEFSGL+FDHQ++FD+QTGEQALERLSFGG RI +T+ AQSRIL+F
Sbjct: 587 RASLIRWAFQGLCINEFSGLKFDHQNTFDVQTGEQALERLSFGGRRIRETIAAQSRILMF 646

Query: 540 WYCTTYLLLEKKKPKYQQLEL--PNPEQTQQKIQLEPLETDL--PPEKEQI-------KS 588
           WY  TYLLLEK KPKYQ+LEL   N E     +QL+  E D    PE + I         
Sbjct: 647 WYSATYLLLEKNKPKYQKLELLVDNGETGNSGVQLDKAEVDQTEKPEDDDINQPLDDQNQ 706

Query: 589 TRQVESESPPLDMYNLEGL 607
           T   + E   +  + LEGL
Sbjct: 707 TSDSDDELDEIRPFVLEGL 725

Arabidopsis thaliana (taxid: 3702)

>sp|Q05360|WHITE_LUCCU Protein white OS=Lucilia cuprina GN=W PE=2 SV=2

 Score =  280 bits (716), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 162/513 (31%), Positives = 274/513 (53%), Gaps = 26/513 (5%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY--KFAYVRQEDLFFSQL 58
           MG SG+GKTTLLN LA +     ++  S +  +NG P   K    + AYV+Q+DLF   L
Sbjct: 118 MGSSGAGKTTLLNALAFRSARGVQISPSSVRMLNGHPVDAKEMQARCAYVQQDDLFIGSL 177

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVG-DAKVRGISGGEKKR 117
           T RE L   A +++P  ++ +++ + V+ ++  L L+ C ++ +G   +V+G+SGGE+KR
Sbjct: 178 TAREHLIFQATVRMPRTMTQKQKLQRVDQVIQDLSLIKCQNTIIGVPGRVKGLSGGERKR 237

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           L+ A E +  P ++  DEPT+GLD+F A  V++ L++L+Q G TVI +IHQP   ++  F
Sbjct: 238 LAFASEALTDPPLLICDEPTSGLDSFMAASVVQVLKKLSQRGKTVILTIHQPSSELFELF 297

Query: 178 DDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQ 237
           D I+L+ EG++ + G    E + +FS  G  CP + NPA+F   +++V          S+
Sbjct: 298 DKILLMAEGRVAFLGTPV-EAVDFFSFIGAQCPTNYNPADFYVQVLAVVPGREIE---SR 353

Query: 238 KRIDSLAESFLQRSSTILYASPLISRE--------GYKKSKLQK--RTIVKKKGGWWRQF 287
            RI  + ++F         A   +SRE          K   LQK   T +  K  W+ QF
Sbjct: 354 DRISKICDNF---------AVGKVSREMEQNFQKIAAKTDGLQKDDETTILYKASWFTQF 404

Query: 288 WLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINT 347
             ++ R+W+   ++    KVR   +   A++ G +F     +Q  + +  G + +   N 
Sbjct: 405 RAIMWRSWISTLKEPLLVKVRLIQTTMVAVLIGLIFLNQPMTQVGVMNINGAIFLFLTNM 464

Query: 348 AMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMA 407
               +   + VF  E  +  RE     Y    Y L K +AE+P+    P +F A+ YPM 
Sbjct: 465 TFQNVFAVINVFTSELPVFMRETRSRLYRCDTYFLGKTLAELPLFLVVPFLFIAIAYPMI 524

Query: 408 RLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVN 467
            L P ++ F     +VT+ +  +++ G  +     +T  A++VGP L   F++FGG ++N
Sbjct: 525 GLRPGITHFLSALALVTLVANVSTSFGYLISCASTSTSMALSVGPPLTIPFLLFGGVFLN 584

Query: 468 ADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQ 500
           + + P+ F+W+   S  R+A +GL IN+++ +Q
Sbjct: 585 SGSVPVYFKWLSYFSWFRYANEGLLINQWADVQ 617

May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color.

Lucilia cuprina (taxid: 7375)

>sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2

 Score =  278 bits (711), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 177/549 (32%), Positives = 290/549 (52%), Gaps = 39/549 (7%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           MGPSGSGK+TLL+ LAG+L  +  + ++G L +NGK +       AYV QED+    LTV
Sbjct: 62  MGPSGSGKSTLLDSLAGRL--ARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTV 119

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           RET++ +A L+LP  +S EE  + V   + +LGL  C+D  +G+   RG+SGGE+KR+S+
Sbjct: 120 RETITYSAHLRLPSDMSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSI 179

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           A E++  P +++ DEPT+GLD+  A  V++ALR +A+DG TVI S+HQP   V+  FDD+
Sbjct: 180 ALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDL 239

Query: 181 VLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRI 240
            LL+ G+ VY G A+   + +F+  G+ CP   NP++     I+ D+ +  +     +RI
Sbjct: 240 FLLSSGESVYFGEAKS-AVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRI 298

Query: 241 D---SLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVK--------------KKGG- 282
               + ++  +  +++++ A  +   E YK+SK  K    +              +KG  
Sbjct: 299 QETPATSDPLMNLATSVIKARLV---ENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSE 355

Query: 283 --WWRQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLL 340
             WW+Q   L  R+++   RD      R    I  +I  G++F+ +G S TSI  R   +
Sbjct: 356 ATWWKQLRTLTARSFINMCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILAR---V 412

Query: 341 QVAAINTAMAALTKTVGVFP---KERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPL 397
                 T       ++G FP   +E  +  +ER  G Y +  Y+LS  I+  P   A  +
Sbjct: 413 SCGGFITGFMTFM-SIGGFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISV 471

Query: 398 MFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTV 457
           + G + Y + +  P  S +  FC  +        ++ + V ++VP     +  G  L+ +
Sbjct: 472 ITGTITYNLVKFRPGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGI 531

Query: 458 FIVFGGYYVNADNTPIIFRWIPRVSLI---RWAFQGLCINEFSGLQFDHQHSFDIQ-TGE 513
            ++  G++    + P IF W   VS I    WA QG   N+F GL+F+     + + TGE
Sbjct: 532 IMMTSGFFRLLPDLPKIF-WRYPVSYISYGSWAIQGGYKNDFLGLEFEPLFPGEPKMTGE 590

Query: 514 QALERLSFG 522
           + +E++ FG
Sbjct: 591 EVIEKV-FG 598

Arabidopsis thaliana (taxid: 3702)

>sp|P10090|WHITE_DROME Protein white OS=Drosophila melanogaster GN=w PE=2 SV=2

 Score =  277 bits (709), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 172/560 (30%), Positives = 294/560 (52%), Gaps = 15/560 (2%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY--KFAYVRQEDLFFSQL 58
           MG SG+GKTTLLN LA +     ++  SG+  +NG+P   K    + AYV+Q+DLF   L
Sbjct: 129 MGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQARCAYVQQDDLFIGSL 188

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVG-DAKVRGISGGEKKR 117
           T RE L   A +++P  L+  +R   V+ ++ +L L  C  + +G   +V+G+SGGE+KR
Sbjct: 189 TAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVKGLSGGERKR 248

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           L+ A E +  P ++  DEPT+GLD+F A  V++ L++L+Q G TVI +IHQP   ++  F
Sbjct: 249 LAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQPSSELFELF 308

Query: 178 DDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISV-DYSSAESVYLS 236
           D I+L+ EG++ + G    E + +FS  G  CP + NPA+F   +++V      ES    
Sbjct: 309 DKILLMAEGRVAFLG-TPSEAVDFFSYVGAQCPTNYNPADFYVQVLAVVPGREIESRDRI 367

Query: 237 QKRIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWM 296
            K  D+ A S + R    L A+     +  +K   Q       K  W+ QF  +L R+W+
Sbjct: 368 AKICDNFAISKVARDMEQLLAT-----KNLEKPLEQPENGYTYKATWFMQFRAVLWRSWL 422

Query: 297 QASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTV 356
              ++    KVR   +   AI+ G +F     +Q  + +  G + +   N     +  T+
Sbjct: 423 SVLKEPLLVKVRLIQTTMVAILIGLIFLGQQLTQVGVMNINGAIFLFLTNMTFQNVFATI 482

Query: 357 GVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRF 416
            VF  E  +  RE     Y    Y L K IAE+P+    PL+F A+ YPM  L   +  F
Sbjct: 483 NVFTSELPVFMREARSRLYRCDTYFLGKTIAELPLFLTVPLVFTAIAYPMIGLRAGVLHF 542

Query: 417 GKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFR 476
                +VT+ +  +++ G  +     +T  A++VGP ++  F++FGG+++N+ + P+  +
Sbjct: 543 FNCLALVTLVANVSTSFGYLISCASSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYLK 602

Query: 477 WIPRVSLIRWAFQGLCINEFSGLQ-----FDHQHSFDIQTGEQALERLSFGGSRISDTVM 531
           W+  +S  R+A +GL IN+++ ++         ++    +G+  LE L+F  + +    +
Sbjct: 603 WLSYLSWFRYANEGLLINQWADVEPGEISCTSSNTTCPSSGKVILETLNFSAADLPLDYV 662

Query: 532 AQSRILLFWYCTTYLLLEKK 551
             + +++ +    YL L  +
Sbjct: 663 GLAILIVSFRVLAYLALRLR 682

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. White dimerize with brown for the transport of guanine. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules.

Drosophila melanogaster (taxid: 7227)

>sp|Q17320|WHITE_CERCA Protein white OS=Ceratitis capitata GN=W PE=2 SV=1

 Score =  276 bits (707), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 167/560 (29%), Positives = 294/560 (52%), Gaps = 14/560 (2%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY--KFAYVRQEDLFFSQL 58
           MG SG+GKTTLLN  A +     ++  S +  +NG P   K    + AYV+Q+DLF   L
Sbjct: 120 MGSSGAGKTTLLNASAFRSSKGVQISPSTIRMLNGHPVDAKEMQARCAYVQQDDLFIGSL 179

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVG-DAKVRGISGGEKKR 117
           T RE L   A +++P  ++ +++ + V+ ++  L L  C ++ +G   +V+G+SGGE+KR
Sbjct: 180 TAREHLIFQAMVRMPRHMTQKQKVQRVDQVIQDLSLGKCQNTLIGVPGRVKGLSGGERKR 239

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           L+ A E +  P ++  DEPT+GLD+F A  V++ L++L+Q G TVI +IHQP   ++  F
Sbjct: 240 LAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELF 299

Query: 178 DDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISV-DYSSAESVYLS 236
           D I+L+ EG++ + G    E + +FS  G TCP +  PA+F   +++V      ES    
Sbjct: 300 DKILLMAEGRVAFLG-TPGEAVDFFSYIGATCPTNYTPADFYVQVLAVVPGREVESRDRV 358

Query: 237 QKRIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWM 296
            K  D+ A   + R     +   L+   G+ K    + T    K  W+ QF  +L R+W+
Sbjct: 359 AKICDNFAVGKVSREMEQNFQK-LVKSNGFGKEDENEYTY---KASWFMQFRAVLWRSWL 414

Query: 297 QASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTV 356
              ++    KVR   +   A++ G +F     +Q  + +  G + +   N        T+
Sbjct: 415 SVLKEPLLVKVRLLQTTMVAVLIGLIFLGQQLTQVGVMNINGAIFLFLTNMTFQNSFATI 474

Query: 357 GVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRF 416
            VF  E  +  RE     Y    Y L K IAE+P+    P +F A+ YP+  L P +  F
Sbjct: 475 TVFTTELPVFMRETRSRLYRCDTYFLGKTIAELPLFLVVPFLFTAIAYPLIGLRPGVDHF 534

Query: 417 GKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFR 476
                +VT+ +  +++ G  +     +T  A++VGP ++  F++FGG+++N+ + P+ F+
Sbjct: 535 FTALALVTLVANVSTSFGYLISCACSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYFK 594

Query: 477 WIPRVSLIRWAFQGLCINEFSGLQ-----FDHQHSFDIQTGEQALERLSFGGSRISDTVM 531
           W+  +S  R+A +GL IN+++ ++         ++    +GE  LE L+F  S +    +
Sbjct: 595 WLSYLSWFRYANEGLLINQWADVKPGEITCTLSNTTCPSSGEVILETLNFSASDLPFDFI 654

Query: 532 AQSRILLFWYCTTYLLLEKK 551
             + +++ +  + Y+ L  +
Sbjct: 655 GLALLIVGFRISAYIALTMR 674

May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color.

Ceratitis capitata (taxid: 7213)

>sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2

 Score =  275 bits (702), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 176/530 (33%), Positives = 289/530 (54%), Gaps = 35/530 (6%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLT 59
           +GPSGSGKTTL+  LAG+L       LSG +  NG+P +S+   K  +V Q+D+ +  LT
Sbjct: 116 LGPSGSGKTTLVTALAGRLQGK----LSGTVSYNGEPFTSSVKRKTGFVTQDDVLYPHLT 171

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           V ETL+  A L+LP+ L+ +E+ E V  ++  LGL  C +S +G   +RGISGGE+KR+S
Sbjct: 172 VMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSVIGGGLIRGISGGERKRVS 231

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD 179
           +  E++ +PS++  DEPT+GLD+  A +++  LR LA+ G TV+ +IHQP   +Y  FD 
Sbjct: 232 IGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRTVVTTIHQPSSRLYRMFDK 291

Query: 180 IVLLTEGKLVYAGPARDEPLAYFSRFGYT-CPDHVNPAEFLADL---ISVDYSSAESVYL 235
           +++L+EG  +Y+G +    + YF   GY      VNPA+F+ DL   I+ D    + +  
Sbjct: 292 VLVLSEGCPIYSGDS-GRVMEYFGSIGYQPGSSFVNPADFVLDLANGITSDTKQYDQIE- 349

Query: 236 SQKRIDSLAESFLQRSSTI------LYASPL---ISR---EGYKKSKLQKRTIVKK-KGG 282
           +  R+D L E    + S I      LY  PL   +SR   +    ++L+K+ I  +    
Sbjct: 350 TNGRLDRLEEQNSVKQSLISSYKKNLYP-PLKEEVSRTFPQDQTNARLRKKAITNRWPTS 408

Query: 283 WWRQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQV 342
           WW QF +LL+R   + S +  +  +R  M ++ +++ G ++W    +   +QD++GLL  
Sbjct: 409 WWMQFSVLLKRGLKERSHESFSG-LRIFMVMSVSLLSGLLWWHSRVAH--LQDQVGLLFF 465

Query: 343 AAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAV 402
            +I      L   +  FP+ER ++ +ER+ G Y L  Y +++ + ++P+    P +F  +
Sbjct: 466 FSIFWGFFPLFNAIFTFPQERPMLIKERSSGIYRLSSYYIARTVGDLPMELILPTIFVTI 525

Query: 403 LYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFG 462
            Y M  L P+L+ F     IV      A  +GL +GA++   + A  +   LM VF++ G
Sbjct: 526 TYWMGGLKPSLTTFIMTLMIVLYNVLVAQGVGLALGAILMDAKKAATLSSVLMLVFLLAG 585

Query: 463 GYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTG 512
           GYY+   + P    W+  VS     F   C     G+Q+     ++  +G
Sbjct: 586 GYYIQ--HIPGFIAWLKYVS-----FSHYCYKLLVGVQYTWDEVYECGSG 628

Arabidopsis thaliana (taxid: 3702)

>sp|Q27256|WHITE_ANOGA Protein white OS=Anopheles gambiae GN=w PE=2 SV=1

 Score =  272 bits (696), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 157/504 (31%), Positives = 271/504 (53%), Gaps = 10/504 (1%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQL 58
           MG SG+GKTTLLN LA +     ++  + +  +NG P + +  +   AYV+Q+DLF   L
Sbjct: 132 MGSSGAGKTTLLNALAFRSPPGVKISPNAVRALNGVPVNAEQLRARCAYVQQDDLFIPSL 191

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVG-DAKVRGISGGEKKR 117
           T RE L   A L++   +    +   V  +L +L LV CAD+ +G   +++G+SGGE+KR
Sbjct: 192 TTREHLLFQAMLRMGRDVPASVKQHRVQEVLQELSLVKCADTIIGAPGRIKGLSGGERKR 251

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           L+ A E +  P ++  DEPT+GLD+F A  V++ L+ +A  G T+I +IHQP   +Y  F
Sbjct: 252 LAFASETLTDPHLLLCDEPTSGLDSFMAHSVLQVLKGMAMKGKTIILTIHQPSSELYCLF 311

Query: 178 DDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISV-DYSSAESVYLS 236
           D I+L+ EG++ + G    +   +FS+ G  CP + NPA+F   ++++     AE   + 
Sbjct: 312 DKILLVAEGRVAFLGSPY-QSAEFFSQLGIPCPPNYNPADFYVQMLAIAPAKEAECRDMI 370

Query: 237 QKRIDSLAESFLQRSSTILYASPLISR---EGYKKSKLQKRTIVKKKGGWWRQFWLLLRR 293
           +K  DS A S + R   +L  + +  +   E Y   +++       +  WW QF+ +L R
Sbjct: 371 KKICDSFAVSPIARE--VLETASVAGKGMDEPYMLQQVEGVGSTGYRSSWWTQFYCILWR 428

Query: 294 AWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALT 353
           +W+   +D    KVR   +   A + GS+++     Q  + +  G L +   N     + 
Sbjct: 429 SWLSVLKDPMLVKVRLLQTAMVATLIGSIYFGQVLDQDGVMNINGSLFLFLTNMTFQNVF 488

Query: 354 KTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTL 413
             + VF  E  +  RE+    Y +  Y L K IAE+P+  A P +F ++ YPM  L    
Sbjct: 489 AVINVFSAELPVFLREKRSRLYRVDTYFLGKTIAELPLFIAVPFVFTSITYPMIGLRTGA 548

Query: 414 SRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPI 473
           + +     IVT+ +  +++ G  +     +   A++VGP ++  F++FGG+++N+ + P 
Sbjct: 549 THYLTTLFIVTLVANVSTSFGYLISCASSSISMALSVGPPVVIPFLIFGGFFLNSASVPA 608

Query: 474 IFRWIPRVSLIRWAFQGLCINEFS 497
            F+++  +S  R+A + L IN++S
Sbjct: 609 YFKYLSYLSWFRYANEALLINQWS 632

May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color.

Anopheles gambiae (taxid: 7165)

>sp|Q9DBM0|ABCG8_MOUSE ATP-binding cassette sub-family G member 8 OS=Mus musculus GN=Abcg8 PE=2 SV=1

 Score =  271 bits (693), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 166/545 (30%), Positives = 278/545 (51%), Gaps = 31/545 (5%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQL 58
           +G SG G+ +LL+V+ G+         SG + +NG+PS+ +  +   A+VRQ D     L
Sbjct: 105 IGSSGCGRASLLDVITGRGHGGKMK--SGQIWINGQPSTPQLVRKCVAHVRQHDQLLPNL 162

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
           TVRETL+  A+++LP   S  +RD+ V  ++ +L L  CA++ VG+  VRG+SGGE++R+
Sbjct: 163 TVRETLAFIAQMRLPRTFSQAQRDKRVEDVIAELRLRQCANTRVGNTYVRGVSGGERRRV 222

Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
           S+  +L+ +P ++  DEPT+GLD+F A  ++  L +LA+    V+ S+HQPR  ++  FD
Sbjct: 223 SIGVQLLWNPGILILDEPTSGLDSFTAHNLVTTLSRLAKGNRLVLISLHQPRSDIFRLFD 282

Query: 179 DIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQK 238
            ++L+T G  +Y G A+ + + YF+  G+ CP + NPA+F  DL S+D  S E    + +
Sbjct: 283 LVLLMTSGTPIYLGAAQ-QMVQYFTSIGHPCPRYSNPADFYVDLTSIDRRSKEREVATVE 341

Query: 239 RIDSLAESFLQRS---STILYASPLISREGYKKSKLQKRTIVKKKG--------GWWRQF 287
           +  SLA  FL++       L+ +   ++E    +     T+ +           G   QF
Sbjct: 342 KAQSLAALFLEKVQGFDDFLWKAE--AKELNTSTHTVSLTLTQDTDCGTAVELPGMIEQF 399

Query: 288 WLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINT 347
             L+RR      RD PT  +    +   ++I G +++  G  Q S  D   LL +     
Sbjct: 400 STLIRRQISNDFRDLPTLLIHGSEACLMSLIIGFLYYGHGAKQLSFMDTAALLFMIGALI 459

Query: 348 AMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMA 407
               +   V     ER+++  E   G Y  GPY  +K++ E+P   A+ +++   +Y + 
Sbjct: 460 PFNVILDVVSKCHSERSMLYYELEDGLYTAGPYFFAKILGELPEHCAYVIIYAMPIYWLT 519

Query: 408 RLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVN 467
            L P    F     +V +  F    M L   AM+PT   +     +L   F +  G+ +N
Sbjct: 520 NLRPVPELFLLHFLLVWLVVFCCRTMALAASAMLPTFHMSSFFCNALYNSFYLTAGFMIN 579

Query: 468 ADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRIS 527
            DN  I+  WI ++S +RW F GL   +F+G      H +  Q G       +F  S + 
Sbjct: 580 LDNLWIVPAWISKLSFLRWCFSGLMQIQFNG------HLYTTQIG-------NFTFSILG 626

Query: 528 DTVMA 532
           DT+++
Sbjct: 627 DTMIS 631

Transporter that appears to play an indispensable role in the selective transport of the dietary cholesterol in and out of the enterocytes and in the selective sterol excretion by the liver into bile.

Mus musculus (taxid: 10090)

>sp|P58428|ABCG8_RAT ATP-binding cassette sub-family G member 8 OS=Rattus norvegicus GN=Abcg8 PE=2 SV=2

 Score =  266 bits (680), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 161/524 (30%), Positives = 268/524 (51%), Gaps = 20/524 (3%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQL 58
           +G +G G+ TLL+V+ G+         SG + +NG+PS+ +  +   A+VRQ+D     L
Sbjct: 126 IGSAGCGRATLLDVITGRDHGGKMK--SGQIWINGQPSTPQLIQKCVAHVRQQDQLLPNL 183

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
           TVRETL+  A+++LP+  S  +RD+ V  ++ +L L  CA++ VG+  VRG+SGGE++R+
Sbjct: 184 TVRETLTFIAQMRLPKTFSQAQRDKRVEDVIAELRLRQCANTRVGNTYVRGVSGGERRRV 243

Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
           S+  +L+ +P ++  DEPT+GLD+F A  ++  L +LA+    V+ S+HQPR  ++  FD
Sbjct: 244 SIGVQLLWNPGILILDEPTSGLDSFTAHNLVRTLSRLAKGNRLVLISLHQPRSDIFRLFD 303

Query: 179 DIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQK 238
            ++L+T G  +Y G A+   + YF+  GY CP + NPA+F  DL S+D  S E    + +
Sbjct: 304 LVLLMTSGTPIYLGVAQ-HMVQYFTSIGYPCPRYSNPADFYVDLTSIDRRSKEQEVATME 362

Query: 239 RIDSLAESFLQRS---STILYASPLISREGYKKSKLQKRTIVKKKG------GWWRQFWL 289
           +   LA  FL++       L+ +   S +    +  Q  T     G      G  +QF  
Sbjct: 363 KARLLAALFLEKVQGFDDFLWKAEAKSLDTGTYAVSQTLTQDTNCGTAAELPGMIQQFTT 422

Query: 290 LLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAM 349
           L+RR      RD PT  +    +   ++I G +++       S  D   LL +       
Sbjct: 423 LIRRQISNDFRDLPTLFIHGAEACLMSLIIGFLYYGHADKPLSFMDMAALLFMIGALIPF 482

Query: 350 AALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARL 409
             +   V     ER+++  E   G Y  GPY  +K++ E+P   A+ +++G  +Y +  L
Sbjct: 483 NVILDVVSKCHSERSLLYYELEDGLYTAGPYFFAKVLGELPEHCAYVIIYGMPIYWLTNL 542

Query: 410 HPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNAD 469
            P    F     ++ +  F    M L   AM+PT   +     +L   F +  G+ +N +
Sbjct: 543 RPGPELFLLHFMLLWLVVFCCRTMALAASAMLPTFHMSSFCCNALYNSFYLTAGFMINLN 602

Query: 470 NTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGE 513
           N  I+  WI ++S +RW F GL   +F+G      H +  Q G 
Sbjct: 603 NLWIVPAWISKMSFLRWCFSGLMQIQFNG------HIYTTQIGN 640

Transporter that appears to play an indispensable role in the selective transport of the dietary cholesterol in and out of the enterocytes and in the selective sterol excretion by the liver into bile.

Rattus norvegicus (taxid: 10116)

>sp|Q11180|WHT1_CAEEL ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2

 Score =  266 bits (679), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 171/549 (31%), Positives = 280/549 (51%), Gaps = 31/549 (5%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQL 58
           +G SG+GKTTL+NVL  + + +  L + G + ++G+ ++    +   A+V+Q D+F   +
Sbjct: 26  LGSSGAGKTTLMNVLTSRNLTN--LDVQGSILIDGRRANKWKIREMSAFVQQHDMFVGTM 83

Query: 59  TVRETLSLAAELQL-PEILSVEERDEYVNSLLFKLGLVSCADSNVG-DAKVRGISGGEKK 116
           T RE L   A L++  +  S  ER   V  +L ++GL  CAD+ +G   +++G+S GEKK
Sbjct: 84  TAREHLQFMARLRMGDQYYSDHERQLRVEQVLTQMGLKKCADTVIGIPNQLKGLSCGEKK 143

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           RLS A E++  P +++ DEPT+GLDAF A  V++ALR LA +G TVI +IHQP   VY  
Sbjct: 144 RLSFASEILTCPKILFCDEPTSGLDAFMAGHVVQALRSLADNGMTVIITIHQPSSHVYSL 203

Query: 177 FDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLS 236
           F+++ L+  G+++Y GP  D+ +  F + GY CP + NPA+ L   ++V  S   +   S
Sbjct: 204 FNNVCLMACGRVIYLGPG-DQAVPLFEKCGYPCPAYYNPADHLIRTLAVIDSDRAT---S 259

Query: 237 QKRIDSLAESFL-----QRSSTILYASPLISREGYKKSKLQKRTIV----KKKGGWWRQF 287
            K I  + + FL     Q    I  A+ L +      S   ++T           +W QF
Sbjct: 260 MKTISKIRQGFLSTDLGQSVLAIGNANKLRAASFVTGSDTSEKTKTFFNQDYNASFWTQF 319

Query: 288 WLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINT 347
             L  R+W+   RD     VR    + +A I G VF++   +  +I    G++     N 
Sbjct: 320 LALFWRSWLTVIRDPNLLSVRLLQILITAFITGIVFFQTPVTPATIISINGIMFNHIRNM 379

Query: 348 AMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMA 407
                   V V   E  IV RE A G Y    Y L+K IAE+P     P+++  ++Y M+
Sbjct: 380 NFMLQFPNVPVITAELPIVLRENANGVYRTSAYFLAKNIAELPQYIILPILYNTIVYWMS 439

Query: 408 RLHPTLSRFGKFCGIVTVE-SFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYV 466
            L+P    +  F  +VT+  +  A ++   V  +   T+ AM + P  +   + FGG+++
Sbjct: 440 GLYPNFWNYC-FASLVTILITNVAISISYAVATIFANTDVAMTILPIFVVPIMAFGGFFI 498

Query: 467 NADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQF------DHQHSFDI----QTGEQAL 516
             D  P  F+W+  +S  ++ ++ L INE+  ++           +F +    + G Q L
Sbjct: 499 TFDAIPSYFKWLSSLSYFKYGYEALAINEWDSIKVIPECFNSSMTAFALDSCPKNGHQVL 558

Query: 517 ERLSFGGSR 525
           E + F  S 
Sbjct: 559 ESIDFSASH 567

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	607
225424174	728	PREDICTED: ABC transporter G family memb	0.996	0.831	0.854	0.0
297737725	729	unnamed protein product [Vitis vinifera]	0.995	0.828	0.854	0.0
356536210	725	PREDICTED: ABC transporter G family memb	0.996	0.834	0.814	0.0
224108347	660	white-brown-complex ABC transporter fami	0.937	0.862	0.878	0.0
255571308	722	abc transporter, putative [Ricinus commu	0.991	0.833	0.833	0.0
297817718	729	abc transporter family protein [Arabidop	0.988	0.823	0.810	0.0
15226227	725	ABC transporter G family member 7 [Arabi	1.0	0.837	0.798	0.0
30677905	727	ABC transporter G family member 7 [Arabi	0.978	0.817	0.809	0.0
13605839	725	At2g01320/F10A8.20 [Arabidopsis thaliana	1.0	0.837	0.798	0.0
30677907	728	ABC transporter G family member 7 [Arabi	0.978	0.815	0.809	0.0

>gi|225424174|ref|XP_002284094.1| PREDICTED: ABC transporter G family member 7-like [Vitis vinifera]

 Score = 1073 bits (2776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/618 (85%), Positives = 563/618 (91%), Gaps = 13/618 (2%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK  S KAYKFAYVRQEDLFFSQLTV
Sbjct: 113 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKARSKKAYKFAYVRQEDLFFSQLTV 172

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           RETLSLAAELQLPE+ SVE+RDEYVN+LL+KLGLVSCADSNVGDAKVRGISGGEKKRLSL
Sbjct: 173 RETLSLAAELQLPELSSVEDRDEYVNNLLYKLGLVSCADSNVGDAKVRGISGGEKKRLSL 232

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           ACELIASPSVI+ADEPTTGLDAFQAEKVME LR LAQDGHTVICSIHQPR SVY KFDDI
Sbjct: 233 ACELIASPSVIFADEPTTGLDAFQAEKVMETLRLLAQDGHTVICSIHQPRSSVYGKFDDI 292

Query: 181 VLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRI 240
           VLLTEG LVYAGPARD+PLAYFSRFGY CPDHVNPAEFLADLIS+DYSSA+SVY SQKRI
Sbjct: 293 VLLTEGALVYAGPARDDPLAYFSRFGYHCPDHVNPAEFLADLISIDYSSADSVYSSQKRI 352

Query: 241 DSLAESFLQRSSTILYASPLISREGYKKS-KLQKRTIVKKKGGWWRQFWLLLRRAWMQAS 299
           D L ESF Q++S +LYA+PL  RE +K + K  ++ +VKKKG WWRQFWLLLRRAWMQAS
Sbjct: 353 DGLVESFSQQTSAVLYATPLTRRESFKSTRKFSEKAVVKKKGVWWRQFWLLLRRAWMQAS 412

Query: 300 RDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 359
           RDGPTNKVR+RMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVF
Sbjct: 413 RDGPTNKVRSRMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 472

Query: 360 PKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKF 419
           PKERAIVDRERAKGSYALGPYLLSKL+AEIPVGAAFPLMFGAVLYPMARLHPTL +FG+F
Sbjct: 473 PKERAIVDRERAKGSYALGPYLLSKLLAEIPVGAAFPLMFGAVLYPMARLHPTLFKFGQF 532

Query: 420 CGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 479
           CGIVTVESFAASAMGLTVGAMVPT EAAMAVGPSLMTVFIVFGGYYVNA+NTPIIFRWIP
Sbjct: 533 CGIVTVESFAASAMGLTVGAMVPTPEAAMAVGPSLMTVFIVFGGYYVNAENTPIIFRWIP 592

Query: 480 RVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLF 539
           R+SLIRWAFQGLCINEFSGL+FDHQ  FDIQTGEQALERLSFGGSRI DTVMAQSRILLF
Sbjct: 593 RISLIRWAFQGLCINEFSGLEFDHQQPFDIQTGEQALERLSFGGSRIRDTVMAQSRILLF 652

Query: 540 WYCTTYLLLEKKKPKYQQLELPNPEQTQQKIQLEPLETD-------LPPEKEQIKSTRQV 592
           WY TTY LLE+ KPKYQQLE P+P+Q Q  +QLEP +TD       L P   Q++ST+++
Sbjct: 653 WYFTTYRLLERNKPKYQQLEPPSPDQVQPPLQLEPSDTDQAKPNQQLEPPLAQVESTQKL 712

Query: 593 ESESPPLDM---YNLEGL 607
             ESPPLD    + LEGL
Sbjct: 713 --ESPPLDQIQPFILEGL 728

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737725|emb|CBI26926.3| unnamed protein product [Vitis vinifera]

 Score = 1072 bits (2772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/617 (85%), Positives = 562/617 (91%), Gaps = 13/617 (2%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK  S KAYKFAYVRQEDLFFSQLTV
Sbjct: 113 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKARSKKAYKFAYVRQEDLFFSQLTV 172

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           RETLSLAAELQLPE+ SVE+RDEYVN+LL+KLGLVSCADSNVGDAKVRGISGGEKKRLSL
Sbjct: 173 RETLSLAAELQLPELSSVEDRDEYVNNLLYKLGLVSCADSNVGDAKVRGISGGEKKRLSL 232

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           ACELIASPSVI+ADEPTTGLDAFQAEKVME LR LAQDGHTVICSIHQPR SVY KFDDI
Sbjct: 233 ACELIASPSVIFADEPTTGLDAFQAEKVMETLRLLAQDGHTVICSIHQPRSSVYGKFDDI 292

Query: 181 VLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRI 240
           VLLTEG LVYAGPARD+PLAYFSRFGY CPDHVNPAEFLADLIS+DYSSA+SVY SQKRI
Sbjct: 293 VLLTEGALVYAGPARDDPLAYFSRFGYHCPDHVNPAEFLADLISIDYSSADSVYSSQKRI 352

Query: 241 DSLAESFLQRSSTILYASPLISREGYKKS-KLQKRTIVKKKGGWWRQFWLLLRRAWMQAS 299
           D L ESF Q++S +LYA+PL  RE +K + K  ++ +VKKKG WWRQFWLLLRRAWMQAS
Sbjct: 353 DGLVESFSQQTSAVLYATPLTRRESFKSTRKFSEKAVVKKKGVWWRQFWLLLRRAWMQAS 412

Query: 300 RDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 359
           RDGPTNKVR+RMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVF
Sbjct: 413 RDGPTNKVRSRMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 472

Query: 360 PKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKF 419
           PKERAIVDRERAKGSYALGPYLLSKL+AEIPVGAAFPLMFGAVLYPMARLHPTL +FG+F
Sbjct: 473 PKERAIVDRERAKGSYALGPYLLSKLLAEIPVGAAFPLMFGAVLYPMARLHPTLFKFGQF 532

Query: 420 CGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 479
           CGIVTVESFAASAMGLTVGAMVPT EAAMAVGPSLMTVFIVFGGYYVNA+NTPIIFRWIP
Sbjct: 533 CGIVTVESFAASAMGLTVGAMVPTPEAAMAVGPSLMTVFIVFGGYYVNAENTPIIFRWIP 592

Query: 480 RVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLF 539
           R+SLIRWAFQGLCINEFSGL+FDHQ  FDIQTGEQALERLSFGGSRI DTVMAQSRILLF
Sbjct: 593 RISLIRWAFQGLCINEFSGLEFDHQQPFDIQTGEQALERLSFGGSRIRDTVMAQSRILLF 652

Query: 540 WYCTTYLLLEKKKPKYQQLELPNPEQTQQKIQLEPLETD-------LPPEKEQIKSTRQV 592
           WY TTY LLE+ KPKYQQLE P+P+Q Q  +QLEP +TD       L P   Q++ST+++
Sbjct: 653 WYFTTYRLLERNKPKYQQLEPPSPDQVQPPLQLEPSDTDQAKPNQQLEPPLAQVESTQKL 712

Query: 593 ESESPPLDM---YNLEG 606
             ESPPLD    + LEG
Sbjct: 713 --ESPPLDQIQPFILEG 727

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536210|ref|XP_003536632.1| PREDICTED: ABC transporter G family member 7-like [Glycine max]

 Score = 1036 bits (2679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/614 (81%), Positives = 547/614 (89%), Gaps = 9/614 (1%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           MGPSGSGKTTLLNVLAGQL ASPRLHLSG+LE NGKP S  AYKFAYVRQEDLFFSQLTV
Sbjct: 111 MGPSGSGKTTLLNVLAGQLTASPRLHLSGVLEFNGKPGSKNAYKFAYVRQEDLFFSQLTV 170

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           RETLSLA ELQLP I S EERDE+VN+LLFKLGLVSCAD+NVGDAKVRGISGGEKKRLS+
Sbjct: 171 RETLSLATELQLPNISSAEERDEFVNNLLFKLGLVSCADTNVGDAKVRGISGGEKKRLSM 230

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           ACEL+ASPSVI+ADEPTTGLDAFQAEKVME L+QLAQDGHTVICSIHQPRGSVY KFDDI
Sbjct: 231 ACELLASPSVIFADEPTTGLDAFQAEKVMETLQQLAQDGHTVICSIHQPRGSVYSKFDDI 290

Query: 181 VLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRI 240
           +LLTEG LVYAGPARDEPLAYFS+FGY CPDH+NPAEFLADLIS+DYSSA+SVY SQKRI
Sbjct: 291 ILLTEGSLVYAGPARDEPLAYFSKFGYQCPDHINPAEFLADLISIDYSSADSVYTSQKRI 350

Query: 241 DSLAESFLQRSSTILYASPL-ISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQAS 299
           D L ESF QR S ++YA+P+ I+     + K+ +R +VKKKG WW+QFWLLL+RAWMQAS
Sbjct: 351 DGLVESFSQRQSAVIYATPITINDLSNSRKKISQRAVVKKKGVWWKQFWLLLKRAWMQAS 410

Query: 300 RDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 359
           RD PTNKVRARMSIASAIIFGSVFWRMG SQTSIQDRMGLLQV AINTAMAALTKTVGVF
Sbjct: 411 RDAPTNKVRARMSIASAIIFGSVFWRMGNSQTSIQDRMGLLQVTAINTAMAALTKTVGVF 470

Query: 360 PKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKF 419
           PKERAIVDRERAKGSY+LGPYL SKL+AEIP+GAAFPLMFGAVLYPMARLHPT+ RFGKF
Sbjct: 471 PKERAIVDRERAKGSYSLGPYLFSKLLAEIPIGAAFPLMFGAVLYPMARLHPTMQRFGKF 530

Query: 420 CGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 479
           CGIVT+ESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVN +NTPIIFRWIP
Sbjct: 531 CGIVTMESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPIIFRWIP 590

Query: 480 RVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLF 539
            VSLIRWAFQGL INEFSGLQFDHQHSFDIQTGEQALER+SFG SRI DTV+AQ+RILLF
Sbjct: 591 NVSLIRWAFQGLSINEFSGLQFDHQHSFDIQTGEQALERISFGKSRIRDTVIAQNRILLF 650

Query: 540 WYCTTYLLLEKKKPKYQQLELPNPEQTQQKIQLEPLETDLPPEKEQIKSTRQVES----E 595
           WYCTTYLLLEK KPKYQQLE P  + ++  ++LE L ++   +  +     Q++S    E
Sbjct: 651 WYCTTYLLLEKNKPKYQQLESP-IDHSKPHLKLEELNSEQVDQTIEAPPVSQLDSKQPLE 709

Query: 596 SPPLDM---YNLEG 606
           SP +D+   + LEG
Sbjct: 710 SPEVDLVGSFVLEG 723

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108347|ref|XP_002314815.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222863855|gb|EEF00986.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score = 1023 bits (2645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/569 (87%), Positives = 521/569 (91%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG+PSSN+AYK AYVRQEDLFFSQLTV
Sbjct: 92  MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGRPSSNRAYKLAYVRQEDLFFSQLTV 151

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           RETLSLAAELQLPEI SVEERDEYVN+LLFKLGL SCAD+NVGDAKVRGISGGEKKRLSL
Sbjct: 152 RETLSLAAELQLPEIASVEERDEYVNNLLFKLGLASCADTNVGDAKVRGISGGEKKRLSL 211

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           ACELIASPSVI++DEPTTGLDAFQAEKVME LRQLAQDGHTVICSIHQPRGSVY KFDDI
Sbjct: 212 ACELIASPSVIFSDEPTTGLDAFQAEKVMETLRQLAQDGHTVICSIHQPRGSVYGKFDDI 271

Query: 181 VLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRI 240
           VLL EG LVYAG A D PL YFS+FGY CPDHVNPAEFLADLIS+DYSSAESVY S+KRI
Sbjct: 272 VLLAEGALVYAGSAHDVPLTYFSKFGYRCPDHVNPAEFLADLISIDYSSAESVYSSRKRI 331

Query: 241 DSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASR 300
           D L ESF Q+SSTILYA+PL  +E  KK   +     K KG WWR+FWLLLRRAWMQASR
Sbjct: 332 DGLVESFSQQSSTILYATPLTRKEDSKKLSRKTGVKGKGKGSWWREFWLLLRRAWMQASR 391

Query: 301 DGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFP 360
           DGPTNKVRA MSIASAIIFGSVFWRMG+SQTSIQDRMGLLQVAAINTAMAALTKTVGVFP
Sbjct: 392 DGPTNKVRATMSIASAIIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTVGVFP 451

Query: 361 KERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFC 420
           KERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPM+RLHPT SRFGKFC
Sbjct: 452 KERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMSRLHPTFSRFGKFC 511

Query: 421 GIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPR 480
           GIVT ESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 
Sbjct: 512 GIVTAESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPN 571

Query: 481 VSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLFW 540
           VSLIRWAFQGLCINEF GLQFDHQ S D++TGEQALERLSFGG  I DTV+AQSRILLF 
Sbjct: 572 VSLIRWAFQGLCINEFRGLQFDHQSSIDVETGEQALERLSFGGRHIKDTVVAQSRILLFL 631

Query: 541 YCTTYLLLEKKKPKYQQLELPNPEQTQQK 569
           YCTTYLLLEK KP YQ+LE P  EQ Q +
Sbjct: 632 YCTTYLLLEKNKPSYQRLEPPCHEQIQSQ 660

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571308|ref|XP_002526603.1| abc transporter, putative [Ricinus communis] gi|223534043|gb|EEF35762.1| abc transporter, putative [Ricinus communis]

 Score = 1018 bits (2632), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/618 (83%), Positives = 555/618 (89%), Gaps = 16/618 (2%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           MGPSGSGKTTLLNVLAGQLMAS RLHLSGLLEVNG+P SN+AYKFAYVRQEDLFFSQLTV
Sbjct: 110 MGPSGSGKTTLLNVLAGQLMASTRLHLSGLLEVNGRPCSNQAYKFAYVRQEDLFFSQLTV 169

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           RETLSLAA+LQLPEI SVEERDEYVN+LLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL
Sbjct: 170 RETLSLAAQLQLPEISSVEERDEYVNNLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 229

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           ACELIASPSVI+ADEPTTGLDAFQAE+VME LRQL+QDGHTVICSIHQPRGSVY KFDDI
Sbjct: 230 ACELIASPSVIFADEPTTGLDAFQAERVMETLRQLSQDGHTVICSIHQPRGSVYSKFDDI 289

Query: 181 VLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRI 240
           VLLTEG+LVY GPA +EPLAYFS  GY CPDHVNPAEFLADLIS+DYSS+ESVY S+KRI
Sbjct: 290 VLLTEGELVYTGPAHEEPLAYFSELGYRCPDHVNPAEFLADLISIDYSSSESVYSSRKRI 349

Query: 241 DSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASR 300
           D L ESF Q+  T+LYA+PL +R G  K+ +  +  +K+K  WW+QFWLLL+RAWMQASR
Sbjct: 350 DGLVESFSQKLLTVLYATPL-TRRGSSKNDM--KLSIKRKQSWWKQFWLLLKRAWMQASR 406

Query: 301 DGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFP 360
           DGPTNKVR RMSIASAIIFGSVFWRMGRSQTSI DRMGLLQVAAINTAMAALTKTVGVFP
Sbjct: 407 DGPTNKVRTRMSIASAIIFGSVFWRMGRSQTSILDRMGLLQVAAINTAMAALTKTVGVFP 466

Query: 361 KERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFC 420
           KER+IVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFC
Sbjct: 467 KERSIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFC 526

Query: 421 GIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPR 480
           GIVT ESFAASAMGLTVGAMVPTTEAAMA+GPSLMTVFIVFGGYYVN+DNTPIIFRWIP 
Sbjct: 527 GIVTAESFAASAMGLTVGAMVPTTEAAMALGPSLMTVFIVFGGYYVNSDNTPIIFRWIPN 586

Query: 481 VSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLFW 540
           VSLIRWAFQGLCINEF GL+FDHQ+SFDI+TGEQALERLSFGGS ISDTV+AQSRILLFW
Sbjct: 587 VSLIRWAFQGLCINEFRGLKFDHQNSFDIETGEQALERLSFGGSHISDTVVAQSRILLFW 646

Query: 541 YCTTYLLLEKKKPKYQQLE-LPNPEQTQQKIQLEPLETDL-------PPEKEQIKSTRQV 592
           YCTTYLLL+K KPKYQQLE LP  +QTQ +++ EPL+ D        P   +Q + T+Q 
Sbjct: 647 YCTTYLLLKKNKPKYQQLEPLPLEQQTQPQLEHEPLDADQIKQLQLNPFPLKQDELTQQY 706

Query: 593 ESESPPLDM---YNLEGL 607
             E P LD    + LEGL
Sbjct: 707 --EPPGLDQIRPFILEGL 722

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817718|ref|XP_002876742.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297322580|gb|EFH53001.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 1009 bits (2608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/603 (81%), Positives = 541/603 (89%), Gaps = 3/603 (0%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           MGPSGSGKTTLLNVLAGQL +SPRLHLSGLLEVNGKPSS++AYK A+VRQEDLFFSQLTV
Sbjct: 111 MGPSGSGKTTLLNVLAGQLGSSPRLHLSGLLEVNGKPSSSRAYKLAFVRQEDLFFSQLTV 170

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           RETLS AAELQLPEI S EERD+YVN+LL KLGLVSCADS VGDAKVRGISGGEKKRLSL
Sbjct: 171 RETLSFAAELQLPEISSAEERDDYVNNLLLKLGLVSCADSCVGDAKVRGISGGEKKRLSL 230

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           ACELIASPSVI+ADEPTTGLDAFQAEKVME L++LAQDGHTVICSIHQPRGSVY KFDDI
Sbjct: 231 ACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYAKFDDI 290

Query: 181 VLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRI 240
           VLLTEG LVYAGPA  EPL YF  FG+ CP+HVNPAEFLADLISVDYSS+E+VY SQKR+
Sbjct: 291 VLLTEGTLVYAGPAGKEPLTYFGNFGFLCPEHVNPAEFLADLISVDYSSSETVYSSQKRV 350

Query: 241 DSLAESFLQRSSTILYASPLISREGYKKS-KLQKRTIVKKKGGWWRQFWLLLRRAWMQAS 299
            +L ++F QRSS++LYA+PL  ++  K S + +++ IV++K GWWRQF+LLL+RAWMQAS
Sbjct: 351 HALVDAFSQRSSSVLYATPLGIKDETKNSMRPRRKAIVERKDGWWRQFFLLLKRAWMQAS 410

Query: 300 RDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 359
           RDGPTNKVRARMS+ASA+IFGSVFWRMG+SQTSIQDRMGLLQVAAINTAMAALTKTVGVF
Sbjct: 411 RDGPTNKVRARMSVASALIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 470

Query: 360 PKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKF 419
           PKERAIVDRER+KGSY+LGPYLLSK IAEIP+GAAFPLMFGAVLYPMARL+PTLSRFGKF
Sbjct: 471 PKERAIVDRERSKGSYSLGPYLLSKTIAEIPIGAAFPLMFGAVLYPMARLNPTLSRFGKF 530

Query: 420 CGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 479
           CGIVTVESFAASAMGLTVGAMVP+TEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP
Sbjct: 531 CGIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 590

Query: 480 RVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLF 539
           R SLIRWAFQGLCINEFSGL+FDHQ++FD+QTGEQALERLSFGG RI +T+ AQSRIL+F
Sbjct: 591 RASLIRWAFQGLCINEFSGLKFDHQNTFDVQTGEQALERLSFGGRRIRETIAAQSRILMF 650

Query: 540 WYCTTYLLLEKKKPKYQQLEL--PNPEQTQQKIQLEPLETDLPPEKEQIKSTRQVESESP 597
           WY  TYLLLEK KPKYQ+LEL   N E     +QL+  E D   E E     + ++ +S 
Sbjct: 651 WYSATYLLLEKNKPKYQKLELLVDNGESENPGVQLDEAEIDQAKEPEDDDIKQPLKDQSQ 710

Query: 598 PLD 600
            LD
Sbjct: 711 TLD 713

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226227|ref|NP_178241.1| ABC transporter G family member 7 [Arabidopsis thaliana] gi|42570637|ref|NP_973392.1| ABC transporter G family member 7 [Arabidopsis thaliana] gi|75339027|sp|Q9ZU35.1|AB7G_ARATH RecName: Full=ABC transporter G family member 7; Short=ABC transporter ABCG.7; Short=AtABCG7; AltName: Full=White-brown complex homolog protein 7; Short=AtWBC7 gi|4262239|gb|AAD14532.1| putative membrane transporter [Arabidopsis thaliana] gi|330250339|gb|AEC05433.1| ABC transporter G family member 7 [Arabidopsis thaliana] gi|330250341|gb|AEC05435.1| ABC transporter G family member 7 [Arabidopsis thaliana]

 Score = 1008 bits (2606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/619 (79%), Positives = 542/619 (87%), Gaps = 12/619 (1%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           MGPSGSGKTTLLNVLAGQL  SPRLHLSGLLEVNGKPSS+KAYK A+VRQEDLFFSQLTV
Sbjct: 107 MGPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKPSSSKAYKLAFVRQEDLFFSQLTV 166

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           RETLS AAELQLPEI S EERDEYVN+LL KLGLVSCADS VGDAKVRGISGGEKKRLSL
Sbjct: 167 RETLSFAAELQLPEISSAEERDEYVNNLLLKLGLVSCADSCVGDAKVRGISGGEKKRLSL 226

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           ACELIASPSVI+ADEPTTGLDAFQAEKVME L++LAQDGHTVICSIHQPRGSVY KFDDI
Sbjct: 227 ACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYAKFDDI 286

Query: 181 VLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRI 240
           VLLTEG LVYAGPA  EPL YF  FG+ CP+HVNPAEFLADLISVDYSS+E+VY SQKR+
Sbjct: 287 VLLTEGTLVYAGPAGKEPLTYFGNFGFLCPEHVNPAEFLADLISVDYSSSETVYSSQKRV 346

Query: 241 DSLAESFLQRSSTILYASPLISREGYKKS-KLQKRTIVKKKGGWWRQFWLLLRRAWMQAS 299
            +L ++F QRSS++LYA+PL  +E  K   + +++ IV++  GWWRQF+LLL+RAWMQAS
Sbjct: 347 HALVDAFSQRSSSVLYATPLSMKEETKNGMRPRRKAIVERTDGWWRQFFLLLKRAWMQAS 406

Query: 300 RDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 359
           RDGPTNKVRARMS+ASA+IFGSVFWRMG+SQTSIQDRMGLLQVAAINTAMAALTKTVGVF
Sbjct: 407 RDGPTNKVRARMSVASAVIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 466

Query: 360 PKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKF 419
           PKERAIVDRER+KGSY+LGPYLLSK IAEIP+GAAFPLMFGAVLYPMARL+PTLSRFGKF
Sbjct: 467 PKERAIVDRERSKGSYSLGPYLLSKTIAEIPIGAAFPLMFGAVLYPMARLNPTLSRFGKF 526

Query: 420 CGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 479
           CGIVTVESFAASAMGLTVGAMVP+TEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP
Sbjct: 527 CGIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 586

Query: 480 RVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLF 539
           R SLIRWAFQGLCINEFSGL+FDHQ++FD+QTGEQALERLSFGG RI +T+ AQSRIL+F
Sbjct: 587 RASLIRWAFQGLCINEFSGLKFDHQNTFDVQTGEQALERLSFGGRRIRETIAAQSRILMF 646

Query: 540 WYCTTYLLLEKKKPKYQQLEL--PNPEQTQQKIQLEPLETDL--PPEKEQI-------KS 588
           WY  TYLLLEK KPKYQ+LEL   N E     +QL+  E D    PE + I         
Sbjct: 647 WYSATYLLLEKNKPKYQKLELLVDNGETGNSGVQLDKAEVDQTEKPEDDDINQPLDDQNQ 706

Query: 589 TRQVESESPPLDMYNLEGL 607
           T   + E   +  + LEGL
Sbjct: 707 TSDSDDELDEIRPFVLEGL 725

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30677905|ref|NP_849921.1| ABC transporter G family member 7 [Arabidopsis thaliana] gi|222423245|dbj|BAH19599.1| AT2G01320 [Arabidopsis thaliana] gi|330250338|gb|AEC05432.1| ABC transporter G family member 7 [Arabidopsis thaliana]

 Score = 1008 bits (2606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/608 (80%), Positives = 537/608 (88%), Gaps = 14/608 (2%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           MGPSGSGKTTLLNVLAGQL  SPRLHLSGLLEVNGKPSS+KAYK A+VRQEDLFFSQLTV
Sbjct: 107 MGPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKPSSSKAYKLAFVRQEDLFFSQLTV 166

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           RETLS AAELQLPEI S EERDEYVN+LL KLGLVSCADS VGDAKVRGISGGEKKRLSL
Sbjct: 167 RETLSFAAELQLPEISSAEERDEYVNNLLLKLGLVSCADSCVGDAKVRGISGGEKKRLSL 226

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           ACELIASPSVI+ADEPTTGLDAFQAEKVME L++LAQDGHTVICSIHQPRGSVY KFDDI
Sbjct: 227 ACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYAKFDDI 286

Query: 181 VLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRI 240
           VLLTEG LVYAGPA  EPL YF  FG+ CP+HVNPAEFLADLISVDYSS+E+VY SQKR+
Sbjct: 287 VLLTEGTLVYAGPAGKEPLTYFGNFGFLCPEHVNPAEFLADLISVDYSSSETVYSSQKRV 346

Query: 241 DSLAESFLQRSSTILYASPLISREGYKKS-KLQKRTIVKKKGGWWRQFWLLLRRAWMQAS 299
            +L ++F QRSS++LYA+PL  +E  K   + +++ IV++  GWWRQF+LLL+RAWMQAS
Sbjct: 347 HALVDAFSQRSSSVLYATPLSMKEETKNGMRPRRKAIVERTDGWWRQFFLLLKRAWMQAS 406

Query: 300 RDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 359
           RDGPTNKVRARMS+ASA+IFGSVFWRMG+SQTSIQDRMGLLQVAAINTAMAALTKTVGVF
Sbjct: 407 RDGPTNKVRARMSVASAVIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 466

Query: 360 PKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKF 419
           PKERAIVDRER+KGSY+LGPYLLSK IAEIP+GAAFPLMFGAVLYPMARL+PTLSRFGKF
Sbjct: 467 PKERAIVDRERSKGSYSLGPYLLSKTIAEIPIGAAFPLMFGAVLYPMARLNPTLSRFGKF 526

Query: 420 CGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 479
           CGIVTVESFAASAMGLTVGAMVP+TEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP
Sbjct: 527 CGIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 586

Query: 480 RVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLF 539
           R SLIRWAFQGLCINEFSGL+FDHQ++FD+QTGEQALERLSFGG RI +T+ AQSRIL+F
Sbjct: 587 RASLIRWAFQGLCINEFSGLKFDHQNTFDVQTGEQALERLSFGGRRIRETIAAQSRILMF 646

Query: 540 WYCTTYLLLEKKKPKYQQLEL--PNPEQTQQKIQLEPLETDL--PPEKEQIKSTRQVESE 595
           WY  TYLLLEK KPKYQ+LEL   N E     +QL+  E D    PE + I         
Sbjct: 647 WYSATYLLLEKNKPKYQKLELLVDNGETGNSGVQLDKAEVDQTEKPEDDDINQ------- 699

Query: 596 SPPLDMYN 603
             PLD  N
Sbjct: 700 --PLDDQN 705

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13605839|gb|AAK32905.1|AF367318_1 At2g01320/F10A8.20 [Arabidopsis thaliana] gi|22137204|gb|AAM91447.1| At2g01320/F10A8.20 [Arabidopsis thaliana]

 Score = 1008 bits (2606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/619 (79%), Positives = 542/619 (87%), Gaps = 12/619 (1%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           MGPSGSGKTTLLNVLAGQL  SPRLHLSGLLEVNGKPSS+KAYK A+VRQEDLFFSQLTV
Sbjct: 107 MGPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKPSSSKAYKLAFVRQEDLFFSQLTV 166

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           RETLS AAELQLPEI S EERDEYVN+LL KLGLVSCADS VGDAKVRGISGGEKKRLSL
Sbjct: 167 RETLSFAAELQLPEISSAEERDEYVNNLLLKLGLVSCADSCVGDAKVRGISGGEKKRLSL 226

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           ACELIASPSVI+ADEPTTGLDAFQAEKVME L++LAQDGHTVICSIHQPRGSVY KFDDI
Sbjct: 227 ACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYAKFDDI 286

Query: 181 VLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRI 240
           VLLTEG LVYAGPA  EPL YF  FG+ CP+HVNPAEFLADLISVDYSS+E+VY SQKR+
Sbjct: 287 VLLTEGTLVYAGPAGKEPLTYFGNFGFLCPEHVNPAEFLADLISVDYSSSETVYSSQKRV 346

Query: 241 DSLAESFLQRSSTILYASPLISREGYKKS-KLQKRTIVKKKGGWWRQFWLLLRRAWMQAS 299
            +L ++F QRSS++LYA+PL  +E  K   + +++ IV++  GWWRQF+LLL+RAWMQAS
Sbjct: 347 HALVDAFSQRSSSVLYATPLSMKEETKNGMRPRRKAIVERTDGWWRQFFLLLKRAWMQAS 406

Query: 300 RDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 359
           RDGPTNKVRARMS+ASA+IFGSVFWRMG+SQTSIQDRMGLLQVAAINTAMAALTKTVGVF
Sbjct: 407 RDGPTNKVRARMSVASAVIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 466

Query: 360 PKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKF 419
           PKERAIVDRER+KGSY+LGPYLLSK IAEIP+GAAFPLMFGAVLYPMARL+PTLSRFGKF
Sbjct: 467 PKERAIVDRERSKGSYSLGPYLLSKTIAEIPIGAAFPLMFGAVLYPMARLNPTLSRFGKF 526

Query: 420 CGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 479
           CGIVTVESFAASAMGLTVGAMVP+TEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP
Sbjct: 527 CGIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 586

Query: 480 RVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLF 539
           R SLIRWAFQGLCINEFSGL+FDHQ++FD+QTGEQALERLSFGG RI +T+ AQSRIL+F
Sbjct: 587 RASLIRWAFQGLCINEFSGLKFDHQNTFDVQTGEQALERLSFGGRRIRETIAAQSRILMF 646

Query: 540 WYCTTYLLLEKKKPKYQQLEL--PNPEQTQQKIQLEPLETDL--PPEKEQI-------KS 588
           WY  TYLLLEK KPKYQ+LEL   N E     +QL+  E D    PE + I         
Sbjct: 647 WYSATYLLLEKNKPKYQKLELLVDNRETGNSGVQLDKAEVDQTEKPEDDDINQPLDDQNQ 706

Query: 589 TRQVESESPPLDMYNLEGL 607
           T   + E   +  + LEGL
Sbjct: 707 TSDSDDELDEIRPFVLEGL 725

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30677907|ref|NP_849922.1| ABC transporter G family member 7 [Arabidopsis thaliana] gi|330250340|gb|AEC05434.1| ABC transporter G family member 7 [Arabidopsis thaliana]

 Score = 1008 bits (2605), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/608 (80%), Positives = 537/608 (88%), Gaps = 14/608 (2%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           MGPSGSGKTTLLNVLAGQL  SPRLHLSGLLEVNGKPSS+KAYK A+VRQEDLFFSQLTV
Sbjct: 107 MGPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKPSSSKAYKLAFVRQEDLFFSQLTV 166

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           RETLS AAELQLPEI S EERDEYVN+LL KLGLVSCADS VGDAKVRGISGGEKKRLSL
Sbjct: 167 RETLSFAAELQLPEISSAEERDEYVNNLLLKLGLVSCADSCVGDAKVRGISGGEKKRLSL 226

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           ACELIASPSVI+ADEPTTGLDAFQAEKVME L++LAQDGHTVICSIHQPRGSVY KFDDI
Sbjct: 227 ACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYAKFDDI 286

Query: 181 VLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKRI 240
           VLLTEG LVYAGPA  EPL YF  FG+ CP+HVNPAEFLADLISVDYSS+E+VY SQKR+
Sbjct: 287 VLLTEGTLVYAGPAGKEPLTYFGNFGFLCPEHVNPAEFLADLISVDYSSSETVYSSQKRV 346

Query: 241 DSLAESFLQRSSTILYASPLISREGYKKS-KLQKRTIVKKKGGWWRQFWLLLRRAWMQAS 299
            +L ++F QRSS++LYA+PL  +E  K   + +++ IV++  GWWRQF+LLL+RAWMQAS
Sbjct: 347 HALVDAFSQRSSSVLYATPLSMKEETKNGMRPRRKAIVERTDGWWRQFFLLLKRAWMQAS 406

Query: 300 RDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 359
           RDGPTNKVRARMS+ASA+IFGSVFWRMG+SQTSIQDRMGLLQVAAINTAMAALTKTVGVF
Sbjct: 407 RDGPTNKVRARMSVASAVIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTVGVF 466

Query: 360 PKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKF 419
           PKERAIVDRER+KGSY+LGPYLLSK IAEIP+GAAFPLMFGAVLYPMARL+PTLSRFGKF
Sbjct: 467 PKERAIVDRERSKGSYSLGPYLLSKTIAEIPIGAAFPLMFGAVLYPMARLNPTLSRFGKF 526

Query: 420 CGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 479
           CGIVTVESFAASAMGLTVGAMVP+TEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP
Sbjct: 527 CGIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 586

Query: 480 RVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLF 539
           R SLIRWAFQGLCINEFSGL+FDHQ++FD+QTGEQALERLSFGG RI +T+ AQSRIL+F
Sbjct: 587 RASLIRWAFQGLCINEFSGLKFDHQNTFDVQTGEQALERLSFGGRRIRETIAAQSRILMF 646

Query: 540 WYCTTYLLLEKKKPKYQQLEL--PNPEQTQQKIQLEPLETDL--PPEKEQIKSTRQVESE 595
           WY  TYLLLEK KPKYQ+LEL   N E     +QL+  E D    PE + I         
Sbjct: 647 WYSATYLLLEKNKPKYQKLELLVDNGETGNSGVQLDKAEVDQTEKPEDDDINQ------- 699

Query: 596 SPPLDMYN 603
             PLD  N
Sbjct: 700 --PLDDQN 705

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	607
DICTYBASE|DDB_G0269214	793	abcG1 "ABC transporter G famil	0.360	0.276	0.456	4e-75
FB|FBgn0003996	687	w "white" [Drosophila melanoga	0.894	0.790	0.307	1.8e-71
UNIPROTKB|F1PS83	670	ABCG8 "Uncharacterized protein	0.812	0.735	0.330	1.8e-71
ZFIN|ZDB-GENE-050517-41	654	abcg8 "ATP-binding cassette, s	0.815	0.756	0.325	6.1e-71
ZFIN|ZDB-GENE-050517-35	644	abcg2a "ATP-binding cassette,	0.835	0.787	0.347	5.5e-70
TAIR|locus:2028656	648	ABCG14 "ATP-binding cassette G	0.815	0.763	0.332	2.7e-68
UNIPROTKB|F1N3K2	669	ABCG8 "Uncharacterized protein	0.810	0.735	0.322	7.2e-68
UNIPROTKB|Q9H221	673	ABCG8 "ATP-binding cassette su	0.813	0.734	0.320	7.2e-68
UNIPROTKB|E3LWM9	654	Cre-wht-1 "CRE-WHT-1 protein"	0.817	0.758	0.330	1.2e-67
UNIPROTKB|F1NGV3	643	ABCG8 "Uncharacterized protein	0.815	0.769	0.322	2.4e-67

DICTYBASE|DDB_G0269214 abcG1 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 503 (182.1 bits), Expect = 4.0e-75, Sum P(2) = 4.0e-75
 Identities = 104/228 (45%), Positives = 155/228 (67%)

Query:     1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQL 58
             MGPSG+GKTTLL++LA +L     ++ SG + +NG  S    +K    YV Q D     L
Sbjct:   155 MGPSGAGKTTLLDILAHRL----NINGSGTMYLNGNKSDFNIFKKLCGYVTQSDSLMPSL 210

Query:    59 TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVG--DAKVRGISGGEKK 116
             TVRETL+  A+L++P  + ++E+ + V  ++ ++GL  CAD+ VG  D K+RGISGGE++
Sbjct:   211 TVRETLNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVGTADNKIRGISGGERR 270

Query:   117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
             R++++ EL+  PSVI  DEPT+GLDA  +  VM AL++LA+ G T+IC+IHQPR ++Y  
Sbjct:   271 RVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKSGRTIICTIHQPRSNIYDM 330

Query:   177 FDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLIS 224
             FD+++LL +G  +Y G A ++ L YF+  GY C +  NPA+F  DLI+
Sbjct:   331 FDNLLLLGDGNTIYYGKA-NKALEYFNANGYHCSEKTNPADFFLDLIN 377

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0003996 w "white" [Drosophila melanogaster (taxid:7227)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 171/556 (30%), Positives = 292/556 (52%)

Query:     1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY--KFAYVRQEDLFFSQL 58
             MG SG+GKTTLLN LA +     ++  SG+  +NG+P   K    + AYV+Q+DLF   L
Sbjct:   129 MGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQARCAYVQQDDLFIGSL 188

Query:    59 TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVG-DAKVRGISGGEKKR 117
             T RE L   A +++P  L+  +R   V+ ++ +L L  C  + +G   +V+G+SGGE+KR
Sbjct:   189 TAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVKGLSGGERKR 248

Query:   118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
             L+ A E +  P ++  DEPT+GLD+F A  V++ L++L+Q G TVI +IHQP   ++  F
Sbjct:   249 LAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQPSSELFELF 308

Query:   178 DDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQ 237
             D I+L+ EG++ + G    E + +FS  G  CP + NPA+F   +++V     E    S+
Sbjct:   309 DKILLMAEGRVAFLGTP-SEAVDFFSYVGAQCPTNYNPADFYVQVLAV-VPGREIE--SR 364

Query:   238 KRIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQ 297
              RI  + ++F   S        L++ +  +K   Q       K  W+ QF  +L R+W+ 
Sbjct:   365 DRIAKICDNFAI-SKVARDMEQLLATKNLEKPLEQPENGYTYKATWFMQFRAVLWRSWLS 423

Query:   298 ASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVG 357
               ++    KVR   +   AI+ G +F     +Q  + +  G + +   N     +  T+ 
Sbjct:   424 VLKEPLLVKVRLIQTTMVAILIGLIFLGQQLTQVGVMNINGAIFLFLTNMTFQNVFATIN 483

Query:   358 VFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFG 417
             VF  E  +  RE     Y    Y L K IAE+P+    PL+F A+ YPM  L   +  F 
Sbjct:   484 VFTSELPVFMREARSRLYRCDTYFLGKTIAELPLFLTVPLVFTAIAYPMIGLRAGVLHFF 543

Query:   418 KFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRW 477
                 +VT+ +  +++ G  +     +T  A++VGP ++  F++FGG+++N+ + P+  +W
Sbjct:   544 NCLALVTLVANVSTSFGYLISCASSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYLKW 603

Query:   478 IPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQT-----GEQALERLSFGGSRISDTVMA 532
             +  +S  R+A +GL IN+++ ++          T     G+  LE L+F  + +    + 
Sbjct:   604 LSYLSWFRYANEGLLINQWADVEPGEISCTSSNTTCPSSGKVILETLNFSAADLPLDYVG 663

Query:   533 QSRILLFWYCTTYLLL 548
              + +++ +    YL L
Sbjct:   664 LAILIVSFRVLAYLAL 679

GO:0006856 "eye pigment precursor transport" evidence=NAS;TAS

GO:0006727 "ommochrome biosynthetic process" evidence=IMP

GO:0042441 "eye pigment metabolic process" evidence=TAS

GO:0005395 "eye pigment precursor transporter activity" evidence=NAS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006726 "eye pigment biosynthetic process" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0008049 "male courtship behavior" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0048072 "compound eye pigmentation" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0070731 "cGMP transport" evidence=IMP

GO:0007613 "memory" evidence=IMP

GO:0042401 "cellular biogenic amine biosynthetic process" evidence=IMP

UNIPROTKB|F1PS83 ABCG8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 169/512 (33%), Positives = 279/512 (54%)

Query:     1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQL 58
             +G SG G+ +LL+V+ G+     ++  SG + +NGKPSS +  +   A+VRQ D     L
Sbjct:   101 IGSSGCGRASLLDVITGRDHGG-KIK-SGQIWINGKPSSPQVVRKYVAHVRQHDQLLPNL 158

Query:    59 TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
             TVRETL+  A+L+LP   S  +RD+ V+ ++ +L L  CA++ VG+A VRG+SGGE++R+
Sbjct:   159 TVRETLAFVAQLRLPRTFSQAQRDQRVDDVIAELRLRQCANTRVGNAYVRGVSGGERRRV 218

Query:   119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
             S+  +L+ +P ++  DEPT+GLD+F A  +++ L +LA+    V+ S+HQPR  ++  FD
Sbjct:   219 SIGVQLLWNPGILILDEPTSGLDSFTAHNLVKTLSRLAKGNRLVLVSLHQPRSDIFRLFD 278

Query:   179 DIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQK 238
              ++L+T G  +Y G A+   + YF+  G+ CP + NPA+F  DL S+D  S E    +++
Sbjct:   279 LVLLMTSGTTIYLGAAQ-HMVQYFAGVGHPCPRYSNPADFYVDLTSIDRRSREHEVATRE 337

Query:   239 RIDSLAESFLQR---SSTILYASPLISREGYKKSKLQKRTIVKKKG---------GWWRQ 286
             +  SLA  F ++   S   L+ +    RE  + + L+ R + +            G  +Q
Sbjct:   338 KAQSLAALFREKVRGSDDFLWRAE--ERELGEGTCLESRALPQDTDQPPTPTELPGPVQQ 395

Query:   287 FWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAIN 346
             F +L+RR      RD PT  +R   +   ++I G +++  G  + S+ D   LL +    
Sbjct:   396 FTMLIRRQIFNDFRDLPTLLIRGAEACLMSLIIGFLYYGHGTIKLSLMDTAALLFMIGAL 455

Query:   347 TAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPM 406
                  +   +     ERA++  E   G Y  GPY  +K++ E+P    + ++ G   Y +
Sbjct:   456 IPFNVILDVIAKCHSERAMLYYELEDGLYTAGPYFFTKILGELPEHCVYIMICGMPTYWL 515

Query:   407 ARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYV 466
             A L P L  F     +V +  F    M L V A++PT   +  VG +L   F + GG+ +
Sbjct:   516 ANLRPGLEPFLLHLLLVWLVVFYCRIMALGVAALLPTFHTSSFVGNALYNSFYLTGGFMI 575

Query:   467 NADNTPIIFRWIPRVSLIRWAFQGLCINEFSG 498
             + DN   +  WI +VS +RW F+GL   +F G
Sbjct:   576 SLDNLWTVPAWISKVSFLRWCFEGLMQIQFKG 607

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045796 "negative regulation of intestinal cholesterol absorption" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015914 "phospholipid transport" evidence=IEA

GO:0010949 "negative regulation of intestinal phytosterol absorption" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-050517-41 abcg8 "ATP-binding cassette, sub-family G (WHITE), member 8" [Danio rerio (taxid:7955)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 168/516 (32%), Positives = 284/516 (55%)

Query:     1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQL 58
             +G SG GKT+LL+++  +         SG + +NGKPS+    K   A+VRQ+D     L
Sbjct:    79 IGSSGCGKTSLLDIITCRDEGGSMN--SGEILINGKPSTRSLVKKSIAHVRQDDRLLPHL 136

Query:    59 TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
             TVRETL+  A+L+LP   S ++RD+ V+ ++ +L L  CA + VG+  VRG+SGGE++R+
Sbjct:   137 TVRETLAFVAKLRLPANFSQKQRDQRVDDVIAELRLRQCAHTRVGNEYVRGVSGGERRRV 196

Query:   119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
             S+A +L+ +P ++  DEPT+GLD+F A  ++  L +LA+    V+ S+HQPR  ++  FD
Sbjct:   197 SIAVQLLWNPGILILDEPTSGLDSFTAHNLVITLYRLARGNRLVLLSVHQPRSDIFQLFD 256

Query:   179 DIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQK 238
              +VLL+ G  VY G A+D  ++YF+  GY CP + NP+++  DLIS+D  + E      +
Sbjct:   257 LVVLLSSGSAVYCGQAKDM-VSYFTTLGYPCPRYCNPSDYYVDLISIDRRTPEKEAQCLE 315

Query:   239 RIDSLAESFLQR---SSTILYASPLISREGYK-----KSKLQKRTIV---KKKG---GWW 284
             +   LA  FL++   +   ++ S   + + Y+      S   K +++   K+K    G  
Sbjct:   316 KASMLAAQFLEKVKNNEDFMWKSEERNSKEYQITSSVPSVSMKESVITVSKQKDQLPGKV 375

Query:   285 RQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAA 344
              QF  L+RR      RD  T  V    ++  +++ G +++       SIQD + LL +  
Sbjct:   376 HQFTTLIRRQVFNDYRDLVTLVVHGLEALLMSLLIGFLYFGCTEEGLSIQDTVALLYMIG 435

Query:   345 INTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLY 404
               T  A +   +     ERA++  E   G Y++ PY  +K++ E+P   AF L++G  +Y
Sbjct:   436 ALTPFAVVLDVIAKCHSERAMLYHELEDGMYSVTPYFFAKVLGELPEHCAFTLVYGVPIY 495

Query:   405 PMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGY 464
              +A L+    RF     +V +  + + +M L V A +PT + +  +G +L TVF +  G+
Sbjct:   496 WLAGLNVAPDRFLLNFLLVWLTVYCSRSMALFVAAALPTLQTSSFMGNALFTVFYLTAGF 555

Query:   465 YVNADNT--PIIFRWIPRVSLIRWAFQGLCINEFSG 498
              ++ +N     +  W   +S +RW F+G+   +F G
Sbjct:   556 VISLENMWMATVASWFSYISFMRWGFEGMLQVQFRG 591

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-050517-35 abcg2a "ATP-binding cassette, sub-family G (WHITE), member 2a" [Danio rerio (taxid:7955)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 188/541 (34%), Positives = 287/541 (53%)

Query:     1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS-NKAYKFAYVRQEDLFFSQLT 59
             +G +GSGK++ L+VLA +    P   LSG + ++G P   N      YV Q+D+    LT
Sbjct:    74 LGATGSGKSSFLDVLAAR--KDPA-GLSGEVLIDGAPQPPNFKCLSGYVVQDDVVMGTLT 130

Query:    60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
             VRE L  +A L+LP+ +   E+DE V  L+ +LGL   ADS VG   +RG+SGGE+KR +
Sbjct:   131 VRENLRFSAALRLPKSIKQREKDEKVERLIQELGLSKVADSRVGTQLIRGVSGGERKRTN 190

Query:   120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD 179
             +  ELI  P V++ DEPTTGLDA  A  V+  L+++  +G T+I SIHQPR S+Y  FD 
Sbjct:   191 IGMELIIDPPVLFLDEPTTGLDASTANSVLMLLKKMGNNGRTIILSIHQPRYSIYRLFDS 250

Query:   180 IVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSA--ESVY--- 234
             + LL  GKLVY GPA+D  L+YFS+ GYTC  H NPA+F  D+I+ D S+     +Y   
Sbjct:   251 LTLLVGGKLVYHGPAQDA-LSYFSQIGYTCEPHNNPADFFLDVINGDSSAVTLNKLYEEV 309

Query:   235 LSQKRI--------DSLAESFLQRSSTILYASPLISR--EGYKKSKLQKRTIVKKKGGWW 284
             + Q ++        D L E + QRSS        + R  +G   S   K   +     + 
Sbjct:   310 VDQDQLSSSLKGIEDRLVEEY-QRSSIFQQTHADLQRIVQGQDYSTRPKSRTITYSTSFC 368

Query:   285 RQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAA 344
              QF  +L+R +     +  T+  +  + I  A++ G++F+ +  + + IQ+RMG L    
Sbjct:   369 HQFHWVLKRTFRNLMLNPQTSVAQIGVMIFLALVVGAIFFGVAENSSGIQNRMGALFFIT 428

Query:   345 INTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFP-LMFGAVL 403
              N   ++++    +F  ER +   E   G Y +  Y LSK++++I      P ++F  V 
Sbjct:   429 TNQCFSSVS-AAELFIAERKLFVHEYISGYYRVSVYFLSKILSDILTLRTIPAVIFSCVA 487

Query:   404 YPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGG 463
             Y M  L P    F  F   + + S+ A+AM L + A     +  +A+    MT+  VF  
Sbjct:   488 YFMIGLKPAAEAFFIFLFSIIMVSYTATAMTLAISA----DQTVVAIANIFMTISFVFMM 543

Query:   464 YYVNA----DNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQF--DHQHSFDI-QTGEQAL 516
              ++N     ++  II  WI    L R+    L INEF+GL F  +  +S  +  +GE+ L
Sbjct:   544 LFLNLMARINSLLIILFWIKWQKLKRFVLTALQINEFTGLFFCDNRNNSGSVCSSGEEFL 603

Query:   517 E 517
             +
Sbjct:   604 Q 604

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=IDA

TAIR|locus:2028656 ABCG14 "ATP-binding cassette G14" [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 173/521 (33%), Positives = 278/521 (53%)

Query:     1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK-FAYVRQEDLFFSQLT 59
             +GPSGSGKTTLL+ L G+L  +     SG +  NG+P S    +   +V Q+D+ +  LT
Sbjct:    98 LGPSGSGKTTLLSALGGRLSKT----FSGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLT 153

Query:    60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
             V ETL   A L+LP  L+ +E+ E+V+ ++ +LGL  C +S +G    RGISGGEKKR+S
Sbjct:   154 VWETLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVS 213

Query:   120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD 179
             +  E++ +PS++  DEPT+GLD+  A +++  +++LA  G TV+ +IHQP   +Y  FD 
Sbjct:   214 IGQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDK 273

Query:   180 IVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADL---ISVDYSSAESVYLS 236
             +VLL+EG  +Y G A    + YFS  G++    VNPA+ L DL   I  D +  E+    
Sbjct:   274 VVLLSEGSPIYYGAA-SSAVEYFSSLGFSTSLTVNPADLLLDLANGIPPD-TQKETSEQE 331

Query:   237 QKRI-DSLAESFLQRSSTILYASPLISREG--YKKSKLQKRTIVKKKG--GWWRQFWLLL 291
             QK + ++L  ++ +  ST L A  L + E   Y+ +K   + +  ++    WW QF +LL
Sbjct:   332 QKTVKETLVSAYEKNISTKLKAE-LCNAESHSYEYTKAAAKNLKSEQWCTTWWYQFTVLL 390

Query:   292 RRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAA 351
             +R  ++  R    NK+R    I+ A + G ++W   +S   IQDR  LL   ++      
Sbjct:   391 QRG-VRERRFESFNKLRIFQVISVAFLGGLLWWHTPKSH--IQDRTALLFFFSVFWGFYP 447

Query:   352 LTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHP 411
             L   V  FP+E+ ++ +ER+ G Y L  Y +++ + ++P+  A P  F  ++Y M  L P
Sbjct:   448 LYNAVFTFPQEKRMLIKERSSGMYRLSSYFMARNVGDLPLELALPTAFVFIIYWMGGLKP 507

Query:   412 TLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNT 471
               + F     +V      A  +GL  GA++   + A  +      VF++ GGYYV     
Sbjct:   508 DPTTFILSLLVVLYSVLVAQGLGLAFGALLMNIKQATTLASVTTLVFLIAGGYYVQ--QI 565

Query:   472 PIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTG 512
             P    W+  +S     +   C     G+Q+     ++   G
Sbjct:   566 PPFIVWLKYLS-----YSYYCYKLLLGIQYTDDDYYECSKG 601

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

UNIPROTKB|F1N3K2 ABCG8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 165/511 (32%), Positives = 272/511 (53%)

Query:     1 MGPSGSGKTTLLNVLAGQLMASPRLHL-SGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQ 57
             +G SG G+ +LL+V+ G+    P   + SG + +NG+PS+ +  +   A+VRQ D     
Sbjct:   102 IGSSGCGRASLLDVITGR---GPGGKIKSGQIWINGQPSTAQLVRKCVAHVRQHDQLLPN 158

Query:    58 LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
             LTVRETL+  A+L+LP   S  +RD+ V+ ++ +L L  CA++ VG+  VRG+SGGE++R
Sbjct:   159 LTVRETLAFVAQLRLPRNFSQAQRDKRVDDVIAELRLRQCANTRVGNIYVRGVSGGERRR 218

Query:   118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
             +S+  +L+ +P ++  DEPT+GLD+F A  +++ L +LA+    V+ SIHQPR  ++  F
Sbjct:   219 VSIGVQLLWNPGILILDEPTSGLDSFTAHNLVKTLSRLAKGNRLVLLSIHQPRSDIFGLF 278

Query:   178 DDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQ 237
             D ++L+T G  +Y G A+   + YF+  G+ CP + NPA++  DL S+D  S E    ++
Sbjct:   279 DLVLLMTSGTTIYLGAAQ-HMVQYFTAVGHPCPRYSNPADYYVDLTSIDRRSKEQEVATR 337

Query:   238 KRIDSLAESFLQRS---STILYASPLISREGYKKSKLQKRT-------IVKKKGGWWRQF 287
             +   SLA  F ++       L+ +   SRE    + +Q             K  G  +QF
Sbjct:   338 ETARSLAALFKEKVRGFDDFLWTAE--SREQSVGTCVQSPAPDTNLFQAPTKLPGPLQQF 395

Query:   288 WLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINT 347
              +L+RR      RD PT  +    +   ++I G +++  G  Q S+ D   LL +     
Sbjct:   396 AILIRRQISNDFRDLPTLLIHGAEACLMSLIIGFLYYGHGAIQLSLTDTAALLFMIGALV 455

Query:   348 AMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMA 407
                 +   +     ERA++  E   G Y  GPY  +K++ E P    + +++G  +Y +A
Sbjct:   456 PFNVILDVISKCHSERALLYYELEDGLYTAGPYFFAKILGEFPEHCVYIIIYGMPIYWLA 515

Query:   408 RLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVN 467
              L P L  F     +V +  F    M L   A++PT   +   G +L   F + GG+ ++
Sbjct:   516 NLRPGLEPFLLHFLLVWLVVFCCRVMALAAAALLPTFHMSSFFGNALYNSFYLTGGFMIS 575

Query:   468 ADNTPIIFRWIPRVSLIRWAFQGLCINEFSG 498
              DN   +   I +VS +RW F+GL   +FSG
Sbjct:   576 LDNLWTVPALISKVSFLRWCFEGLMKIQFSG 606

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045796 "negative regulation of intestinal cholesterol absorption" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015914 "phospholipid transport" evidence=IEA

GO:0010949 "negative regulation of intestinal phytosterol absorption" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q9H221 ABCG8 "ATP-binding cassette sub-family G member 8" [Homo sapiens (taxid:9606)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 163/509 (32%), Positives = 270/509 (53%)

Query:     1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQL 58
             +G SG G+ +LL+V+ G+     ++  SG + +NG+PSS +  +   A+VRQ +     L
Sbjct:   104 IGSSGCGRASLLDVITGRGHGG-KIK-SGQIWINGQPSSPQLVRKCVAHVRQHNQLLPNL 161

Query:    59 TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
             TVRETL+  A+++LP   S  +RD+ V  ++ +L L  CAD+ VG+  VRG+SGGE++R+
Sbjct:   162 TVRETLAFIAQMRLPRTFSQAQRDKRVEDVIAELRLRQCADTRVGNMYVRGLSGGERRRV 221

Query:   119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
             S+  +L+ +P ++  DEPT+GLD+F A  +++ L +LA+    V+ S+HQPR  ++  FD
Sbjct:   222 SIGVQLLWNPGILILDEPTSGLDSFTAHNLVKTLSRLAKGNRLVLISLHQPRSDIFRLFD 281

Query:   179 DIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQK 238
              ++L+T G  +Y G A+   + YF+  GY CP + NPA+F  DL S+D  S E    +++
Sbjct:   282 LVLLMTSGTPIYLGAAQ-HMVQYFTAIGYPCPRYSNPADFYVDLTSIDRRSREQELATRE 340

Query:   239 RIDSLAESFLQRSSTI---LYASPL--ISREGYKKSK---LQKRTIVK--KKGGWWRQFW 288
             +  SLA  FL++   +   L+ +    +  +   +S    L    +    K  G  +QF 
Sbjct:   341 KAQSLAALFLEKVRDLDDFLWKAETKDLDEDTCVESSVTPLDTNCLPSPTKMPGAVQQFT 400

Query:   289 LLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTA 348
              L+RR      RD PT  +    +   ++  G +++  G  Q S  D   LL +      
Sbjct:   401 TLIRRQISNDFRDLPTLLIHGAEACLMSMTIGFLYFGHGSIQLSFMDTAALLFMIGALIP 460

Query:   349 MAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMAR 408
                +   +     ERA++  E   G Y  GPY  +K++ E+P   A+ +++G   Y +A 
Sbjct:   461 FNVILDVISKCYSERAMLYYELEDGLYTTGPYFFAKILGELPEHCAYIIIYGMPTYWLAN 520

Query:   409 LHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNA 468
             L P L  F     +V +  F    M L   A++PT   A     +L   F + GG+ +N 
Sbjct:   521 LRPGLQPFLLHFLLVWLVVFCCRIMALAAAALLPTFHMASFFSNALYNSFYLAGGFMINL 580

Query:   469 DNTPIIFRWIPRVSLIRWAFQGLCINEFS 497
              +   +  WI +VS +RW F+GL   +FS
Sbjct:   581 SSLWTVPAWISKVSFLRWCFEGLMKIQFS 609

GO:0016021 "integral to membrane" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0015914 "phospholipid transport" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0015918 "sterol transport" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0042632 "cholesterol homeostasis" evidence=IMP

GO:0045796 "negative regulation of intestinal cholesterol absorption" evidence=IMP

GO:0030299 "intestinal cholesterol absorption" evidence=IC

GO:0016887 "ATPase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0033344 "cholesterol efflux" evidence=IGI

GO:0017127 "cholesterol transporter activity" evidence=IGI

GO:0016324 "apical plasma membrane" evidence=IMP

GO:0007588 "excretion" evidence=IGI

GO:0010949 "negative regulation of intestinal phytosterol absorption" evidence=IMP

GO:0006200 "ATP catabolic process" evidence=IDA

UNIPROTKB|E3LWM9 Cre-wht-1 "CRE-WHT-1 protein" [Caenorhabditis remanei (taxid:31234)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 169/511 (33%), Positives = 276/511 (54%)

Query:     1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKF-AYVRQEDLFFSQL 58
             MG SG+GKTTL+NVL  + + +  L + G + ++GK ++  K  +  A+V+Q D+F   +
Sbjct:    82 MGSSGAGKTTLMNVLTSRNLTN--LDVQGSILIDGKRANKWKIREMSAFVQQHDMFVGTM 139

Query:    59 TVRETLSLAAELQL-PEILSVEERDEYVNSLLFKLGLVSCADSNVG-DAKVRGISGGEKK 116
             T RE L   A L++  E  S EER+  VN +L ++GL  CAD+ +G   +++G+S GEKK
Sbjct:   140 TAREHLQFMARLRMGSEYYSEEERETRVNQVLTQMGLQKCADTVIGIPNQLKGLSCGEKK 199

Query:   117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
             RL+ A E++  P +++ DEPT+GLDAF A  V++ALR+LA +G TVI +IHQP   VY  
Sbjct:   200 RLAFASEILTCPKILFCDEPTSGLDAFMAGHVVQALRRLADNGMTVIITIHQPSSQVYSL 259

Query:   177 FDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISV-DYSSAESVY- 234
             F+++ L+  G+++Y GP  D+ +  F R G+ CP + NPA+ L   ++V D   A S+  
Sbjct:   260 FNNVCLMACGRVIYLGPG-DQAVPLFERCGFPCPAYYNPADHLIRTLAVIDSDRATSMKT 318

Query:   235 LSQKRIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIV----KKKGGWWRQFWLL 290
             +S+ R   L+    Q    I  A+ L +      S+  ++T           +W QF  L
Sbjct:   319 ISKIRQGFLSTDLGQSVLAIGNANKLRAASFATSSETSEKTKTFFNQDYNASFWTQFRAL 378

Query:   291 LRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMA 350
               R+++   RD     VR    I +A+I G VF++   +  +I    G++     N    
Sbjct:   379 FWRSYLTVIRDPNLLSVRLLQIIITALITGLVFFQTPVTPATIISVNGIMFNHIRNMNFM 438

Query:   351 ALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLH 410
                  V V   E  IV RE A G Y    Y L+K IAE+P     P+++  ++Y ++ L+
Sbjct:   439 LQFPNVPVITAELPIVLRENANGVYRTSAYFLAKNIAELPQYIILPVLYNTIVYWLSGLY 498

Query:   411 PTLSRFGKFCGIVTVE-SFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNAD 469
             P    +  F  +VT+  +  A ++   V  +   T+ AM V P  +   + FGG+++  D
Sbjct:   499 PNFWNYC-FASLVTILITNVAISISYAVATIFANTDVAMTVLPIFVVPIMAFGGFFITFD 557

Query:   470 NTPIIFRWIPRVSLIRWAFQGLCINEFSGLQ 500
               P  F W+  +S  ++ ++ L INE+  ++
Sbjct:   558 AIPSYFTWLSSLSYFKYGYEALAINEWESIK 588

GO:0016246 "RNA interference" evidence=ISS

UNIPROTKB|F1NGV3 ABCG8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 165/511 (32%), Positives = 276/511 (54%)

Query:     1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQL 58
             +G +  GKT+LL+V+  +     ++  SG + +N KPS+ +  K   A+VRQ+D     L
Sbjct:    81 IGSTAGGKTSLLDVITCRDHGG-KIK-SGHIMINNKPSTPQLVKKCIAHVRQDDRLLPHL 138

Query:    59 TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
             TVRETL   A L+LP   S  +R + V  ++ +L L  CA++ VG+  +RGISGGE++R+
Sbjct:   139 TVRETLLFIARLRLPACFSDSQRQKRVEDVIAELRLRQCANTRVGNEYLRGISGGERRRV 198

Query:   119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
             S+A +L+ +P ++  DEPT+GLD+F +  ++  L +LA+    V+ S+HQPR  ++  FD
Sbjct:   199 SIAVQLLWNPGILILDEPTSGLDSFTSHNLVITLSRLARGNRLVLLSLHQPRSDIFQLFD 258

Query:   179 DIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQK 238
              ++L+T G  +Y+G ARD  + YF+  GY CP + NPA+F  DL S+D  + E    S K
Sbjct:   259 LVLLMTSGVTIYSGAARDM-VQYFTELGYPCPRYSNPADFYVDLTSIDKQTTEKEMESLK 317

Query:   239 RIDSLAESFLQRSSTILYASPLI-SREGYKKSKLQKRTIVKKKG-----GWWRQFWLLLR 292
             R ++LA  F ++     Y   L  + EG   SK ++   +         G  +QF +LL 
Sbjct:   318 RANTLASLFQEKIKD--YDDFLWKASEGSSHSKPEEVINMPYHSSDQLPGVLKQFTVLLS 375

Query:   293 RAWMQASRDGPTNKVRARMSIASAIIFGSVFW-RMGRSQTSIQDRMGLLQVAAINTAMAA 351
             R      RD  T  V    ++  +++ G +++   GR   SI+D   LL +         
Sbjct:   376 RQVSNDFRDISTLLVHGFEALVMSLLIGFLYYGHEGR--LSIRDTSALLYMIGALIPFTV 433

Query:   352 LTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHP 411
             +   +     ERA++  +   G Y++ PY  +K++ E+P   AF +++G  +Y +  L P
Sbjct:   434 ILDVIAKCHSERAMLYLDLENGMYSVTPYFFAKILGELPEHCAFVIIYGVPIYWLTNLFP 493

Query:   412 TLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNT 471
                 F      V +  + A AM L V A++PT + +  +G  L T F + GG+ ++ +  
Sbjct:   494 EAEHFLLNFFSVWLAVYCARAMALWVAALLPTLQLSAFLGNVLFTSFYLSGGFVISLEQL 553

Query:   472 PIIFRWIPRVSLIRWAFQGLCINEFSGLQFD 502
               +  W+ +VS +RW FQG+   +F+   +D
Sbjct:   554 WTVPYWVSKVSFLRWNFQGMMQIQFTDSIYD 584

GO:0005524 "ATP binding" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0010949 "negative regulation of intestinal phytosterol absorption" evidence=IEA

GO:0015914 "phospholipid transport" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0045796 "negative regulation of intestinal cholesterol absorption" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZU35	AB7G_ARATH	No assigned EC number	0.7980	1.0	0.8372	yes	no
Q11180	WHT1_CAEEL	No assigned EC number	0.3114	0.8533	0.8662	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	607
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	1e-133
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	3e-84
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	3e-70
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	8e-65
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	7e-61
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	2e-59
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	4e-55
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	7e-46
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	4e-42
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	3e-41
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	4e-37
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	3e-35
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	1e-31
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	5e-29
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	8e-28
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	3e-27
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	9e-27
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	3e-26
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	1e-25
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	1e-25
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	5e-24
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	7e-24
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	1e-23
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	3e-23
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	4e-23
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	8e-23
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	2e-21
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	3e-21
COG4988	559	COG4988, CydD, ABC-type transport system involved	5e-21
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	9e-21
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	1e-20
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	3e-20
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	3e-20
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	4e-20
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	6e-20
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	1e-19
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	1e-19
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	1e-19
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	2e-19
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	2e-19
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	3e-19
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	5e-19
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	1e-18
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	1e-18
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	3e-18
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	3e-18
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	4e-18
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	6e-18
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	7e-18
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	8e-18
COG4987	573	COG4987, CydC, ABC-type transport system involved	9e-18
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	1e-17
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	1e-17
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	2e-17
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	3e-17
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	3e-17
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	5e-17
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	6e-17
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	9e-17
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	1e-16
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	1e-16
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	1e-16
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	2e-16
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	3e-16
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	4e-16
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	5e-16
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	5e-16
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	5e-16
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	6e-16
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	7e-16
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	8e-16
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	1e-15
pfam00005	119	pfam00005, ABC_tran, ABC transporter	1e-15
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	2e-15
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	2e-15
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	3e-15
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	3e-15
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	3e-15
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	3e-15
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	5e-15
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	5e-15
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	5e-15
COG1123	539	COG1123, COG1123, ATPase components of various ABC	5e-15
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	5e-15
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	6e-15
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	7e-15
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	7e-15
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	8e-15
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	1e-14
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	1e-14
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	1e-14
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-14
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	1e-14
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	1e-14
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-14
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	2e-14
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	2e-14
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	2e-14
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	4e-14
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	6e-14
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	6e-14
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	6e-14
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	7e-14
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	8e-14
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	1e-13
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	2e-13
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	2e-13
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	2e-13
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	3e-13
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	3e-13
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	5e-13
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	6e-13
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	7e-13
COG4133	209	COG4133, CcmA, ABC-type transport system involved	1e-12
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	1e-12
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	1e-12
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	2e-12
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	2e-12
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	2e-12
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	2e-12
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	2e-12
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	2e-12
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	2e-12
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-12
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	4e-12
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	4e-12
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	5e-12
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	5e-12
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	7e-12
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	7e-12
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	8e-12
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	9e-12
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	1e-11
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	2e-11
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	2e-11
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	3e-11
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	3e-11
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	4e-11
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	4e-11
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	4e-11
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	4e-11
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	5e-11
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	5e-11
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	5e-11
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	8e-11
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	9e-11
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	9e-11
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	1e-10
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	1e-10
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	2e-10
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	2e-10
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	3e-10
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	5e-10
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	5e-10
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	5e-10
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	6e-10
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	6e-10
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	8e-10
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	9e-10
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	9e-10
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-09
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	1e-09
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	1e-09
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	2e-09
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-09
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	2e-09
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	2e-09
COG4598	256	COG4598, HisP, ABC-type histidine transport system	2e-09
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	2e-09
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	2e-09
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-09
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-09
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	3e-09
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	3e-09
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	3e-09
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	3e-09
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	3e-09
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	4e-09
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	5e-09
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	5e-09
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	7e-09
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	8e-09
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	9e-09
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	9e-09
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	1e-08
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	1e-08
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	1e-08
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	1e-08
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-08
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	1e-08
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	1e-08
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	2e-08
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	2e-08
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	2e-08
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	3e-08
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	3e-08
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	3e-08
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	3e-08
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	3e-08
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	4e-08
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	4e-08
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	4e-08
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	4e-08
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	4e-08
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	4e-08
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	5e-08
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	6e-08
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	6e-08
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	8e-08
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	8e-08
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	9e-08
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	9e-08
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	1e-07
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	1e-07
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	1e-07
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	1e-07
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	1e-07
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	1e-07
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	1e-07
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	2e-07
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	2e-07
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	2e-07
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	2e-07
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	2e-07
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	3e-07
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	3e-07
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	3e-07
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	3e-07
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	3e-07
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	4e-07
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	5e-07
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	6e-07
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	6e-07
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	6e-07
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	6e-07
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	6e-07
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	7e-07
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	8e-07
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	1e-06
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	1e-06
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	1e-06
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	1e-06
COG5265	497	COG5265, ATM1, ABC-type transport system involved	1e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-06
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	2e-06
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	3e-06
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	3e-06
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	3e-06
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	3e-06
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	3e-06
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	4e-06
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	4e-06
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	4e-06
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	5e-06
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	6e-06
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	7e-06
pfam13304	256	pfam13304, AAA_21, AAA domain	7e-06
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	8e-06
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	8e-06
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	1e-05
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	1e-05
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	1e-05
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	1e-05
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	1e-05
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	1e-05
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	1e-05
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	1e-05
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	1e-05
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	1e-05
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-05
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	2e-05
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	2e-05
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	2e-05
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	3e-05
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	3e-05
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	3e-05
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	3e-05
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	3e-05
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	4e-05
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	4e-05
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	5e-05
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	6e-05
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	6e-05
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	7e-05
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	7e-05
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	7e-05
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	7e-05
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	8e-05
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	8e-05
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	8e-05
cd03241	276	cd03241, ABC_RecN, ATP-binding cassette domain of	9e-05
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	1e-04
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	1e-04
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	1e-04
COG0497	557	COG0497, RecN, ATPase involved in DNA repair [DNA	1e-04
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	1e-04
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-04
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	2e-04
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	2e-04
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	2e-04
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	2e-04
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	2e-04
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	2e-04
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	3e-04
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	3e-04
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	3e-04
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	3e-04
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	3e-04
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	4e-04
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	4e-04
TIGR00634	563	TIGR00634, recN, DNA repair protein RecN	4e-04
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	4e-04
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	5e-04
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	5e-04
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	6e-04
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	6e-04
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	6e-04
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	7e-04
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	8e-04
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	8e-04
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	0.001
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	0.001
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	0.001
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	0.001
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	0.002
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	0.002
pfam12698	278	pfam12698, ABC2_membrane_3, ABC-2 family transport	0.002
cd03270	226	cd03270, ABC_UvrA_I, ATP-binding cassette domain I	0.002
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	0.002
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	0.002
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	0.002
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	0.003
COG0842	286	COG0842, COG0842, ABC-type multidrug transport sys	0.003
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	0.003
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	0.003
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	0.003
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	0.004
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	0.004

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score =  402 bits (1034), Expect = e-133
 Identities = 186/558 (33%), Positives = 304/558 (54%), Gaps = 15/558 (2%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF--AYVRQEDLFFSQL 58
           MG SG+GKTTL+N LA +      +  SG + +NG P   K  +   AYV+Q+DLF   L
Sbjct: 57  MGSSGAGKTTLMNALAFRSP--KGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDA-KVRGISGGEKKR 117
           TVRE L   A L++P  ++ +E+ E V+ +L  LGL  CA++ +G   +V+G+SGGE+KR
Sbjct: 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKR 174

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           L+ A EL+  P +++ DEPT+GLD+F A  V++ L+ LAQ G T+IC+IHQP   ++  F
Sbjct: 175 LAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELF 234

Query: 178 DDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSS-AESVYLS 236
           D I+L+ EG++ Y G   D+ + +FS  G+ CP++ NPA+F   +++V   S  ES    
Sbjct: 235 DKIILMAEGRVAYLGSP-DQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERI 293

Query: 237 QKRIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWM 296
           +K  DS A S + R   ++  +    + G      +    +     WW QF+ LL+R+W+
Sbjct: 294 EKICDSFAVSDIGRD-MLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWL 352

Query: 297 QASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTV 356
              RD    KVR   ++ +AI+ G ++   G +Q  +Q+  G L +   N     +   +
Sbjct: 353 SVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVI 412

Query: 357 GVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRF 416
            VF  E  +  RE   G Y +  Y L+K IAE+P+    P +F ++ Y M  L    + F
Sbjct: 413 NVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472

Query: 417 GKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFR 476
             F  +VT+ +  A++ G  +     +T  A+ VGP  +  F++FGG+++N+D+ P+ F+
Sbjct: 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFK 532

Query: 477 WIPRVSLIRWAFQGLCINEFSG------LQFDHQHSFDIQTGEQALERLSFGGSRISDTV 530
           W+  +S  R+  +GL IN++S          +        +GE  LE LSF  + +   +
Sbjct: 533 WLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCP-SSGEVILETLSFRNADLYLDL 591

Query: 531 MAQSRILLFWYCTTYLLL 548
           +    ++ F+    Y  L
Sbjct: 592 IGLVILIFFFRLLAYFAL 609

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score =  276 bits (707), Expect = 3e-84
 Identities = 165/504 (32%), Positives = 275/504 (54%), Gaps = 20/504 (3%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSG-LLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +GPSGSGK+TLLN LAG++  +   + +G +L  N KP+     +  +V Q+D+ +  LT
Sbjct: 100 LGPSGSGKSTLLNALAGRIQGN---NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLT 156

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           VRETL   + L+LP+ L+ +E+     S++ +LGL  C ++ +G++ +RGISGGE+KR+S
Sbjct: 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVS 216

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD 179
           +A E++ +PS++  DEPT+GLDA  A +++  L  LAQ G T++ S+HQP   VY  FD 
Sbjct: 217 IAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDS 276

Query: 180 IVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLIS----VD-YSSAESVY 234
           +++L+EG+ ++ G   D  +AYF   G++    +NPA+FL DL +     D  S  E   
Sbjct: 277 VLVLSEGRCLFFGKGSD-AMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN 335

Query: 235 LSQKRIDSLAESFLQRSSTILYASPLISRE----GYKKSKLQKRTIVKKKGGWWRQFWLL 290
           + Q  + S       +    +  S          G   +K  + +       W+ QF +L
Sbjct: 336 VKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSIL 395

Query: 291 LRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMA 350
           L+R+ ++  +    N +R    IA+A++ G ++W        +QDR+GLL   +I   + 
Sbjct: 396 LQRS-LKERKHESFNTLRVFQVIAAALLAGLMWWH--SDFRDVQDRLGLLFFISIFWGVF 452

Query: 351 ALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLH 410
               +V VFP+ERAI  +ERA G Y L  Y +++++ ++P+    P +F  V Y MA L 
Sbjct: 453 PSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLK 512

Query: 411 PTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADN 470
           P L  F     ++      +  +GL +GA +   + A  +    M  F++ GG+YV+   
Sbjct: 513 PELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--K 570

Query: 471 TPIIFRWIPRVSLIRWAFQGLCIN 494
            P    WI  +S   ++++ L IN
Sbjct: 571 LPSCMAWIKYISTTFYSYR-LLIN 593

Length = 659

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score =  225 bits (575), Expect = 3e-70
 Identities = 78/194 (40%), Positives = 116/194 (59%), Gaps = 42/194 (21%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQL 58
           MGPSG+GK+TLLN LAG+      L +SG + +NG+P   ++++    YV Q+D+    L
Sbjct: 41  MGPSGAGKSTLLNALAGRRT---GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTL 97

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
           TVRETL  AA+L                                     RG+SGGE+KR+
Sbjct: 98  TVRETLMFAAKL-------------------------------------RGLSGGERKRV 120

Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
           S+A EL+++PS+++ DEPT+GLD+  A +VM  LR+LA  G T+ICSIHQP   ++  FD
Sbjct: 121 SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFD 180

Query: 179 DIVLLTEGKLVYAG 192
            ++LL++G+++Y G
Sbjct: 181 KLLLLSQGRVIYFG 194

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score =  231 bits (590), Expect = 8e-65
 Identities = 140/539 (25%), Positives = 238/539 (44%), Gaps = 46/539 (8%)

Query: 1   MGPSGSGKTTLLNVLAGQL-----MASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDL 53
           +G  GSG +TLL  +A             +   G+          K Y+    Y  + D+
Sbjct: 93  LGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGI----TPEEIKKHYRGDVVYNAETDV 148

Query: 54  FFSQLTVRETLSLAAELQLP----EILSVEERDEYVNSLLFK-LGLVSCADSNVGDAKVR 108
            F  LTV ETL  AA  + P    + +S EE  +++  +     GL    ++ VG+  VR
Sbjct: 149 HFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVR 208

Query: 109 GISGGEKKRLSLACELIASPSVIYA-DEPTTGLDAFQAEKVMEALRQLAQDGH-TVICSI 166
           G+SGGE+KR+S+A E     + I   D  T GLD+  A + + AL+  A     T + +I
Sbjct: 209 GVSGGERKRVSIA-EASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAI 267

Query: 167 HQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVD 226
           +Q     Y  FD +++L EG  +Y GPA D+   YF + G+ CPD    A+FL  L S  
Sbjct: 268 YQCSQDAYELFDKVIVLYEGYQIYFGPA-DKAKQYFEKMGFKCPDRQTTADFLTSLTS-- 324

Query: 227 YSSAESVYL--SQKRIDSLAESFLQR--------------SSTILYASPLISREGYKKSK 270
              AE       +K++    + F                    +   S   ++E Y++S 
Sbjct: 325 --PAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESH 382

Query: 271 LQ---KRTIVKKKG--GWWRQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWR 325
           +    KRT         +  Q    L R +++   +          +I  A+I  SVF+ 
Sbjct: 383 VAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYN 442

Query: 326 MGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKL 385
           + ++ +    R G L  A +  A ++L +   ++ + R IV++ R    Y      ++ +
Sbjct: 443 LPKNTSDFYSRGGALFFAILFNAFSSLLEIASMY-EARPIVEKHRKYALYHPSADAIASI 501

Query: 386 IAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTE 445
           I+EIP      ++F  +LY M     T  RF  +  I+ + + A S +  ++GA+  T  
Sbjct: 502 ISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLS 561

Query: 446 AAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQ 504
            AM     L+    ++ G+ +   +     +WI  V+ + +AF+ L +NEF G +F+  
Sbjct: 562 EAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score =  201 bits (513), Expect = 7e-61
 Identities = 81/194 (41%), Positives = 121/194 (62%), Gaps = 8/194 (4%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQL 58
           +G SGSGKTTLL+ ++G++        SG +  NG+P     ++   AYVRQ+D+    L
Sbjct: 39  LGSSGSGKTTLLDAISGRVEGGGTT--SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
           TVRETL+  A L+LP   S   R + V  +L +      A + +G   V+GISGGE++R+
Sbjct: 97  TVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRD----LALTRIGGNLVKGISGGERRRV 152

Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
           S+A +L+  P V+  DEPT+GLD+F A  ++  L QLA+    VI +IHQPR  ++  FD
Sbjct: 153 SIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFD 212

Query: 179 DIVLLTEGKLVYAG 192
            I+LL+ G++VY+G
Sbjct: 213 RILLLSSGEIVYSG 226

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score =  214 bits (548), Expect = 2e-59
 Identities = 141/516 (27%), Positives = 245/516 (47%), Gaps = 44/516 (8%)

Query: 1    MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLT 59
            MG SG+GKTTLLNVLA ++     +   G   VNG+P  S+      YV+Q+DL     T
Sbjct: 795  MGASGAGKTTLLNVLAERVTTG--VITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTST 852

Query: 60   VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
            VRE+L  +A L+ P+ +S  E+ EYV  ++  L + S AD+ VG     G++  ++KRL+
Sbjct: 853  VRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLT 911

Query: 120  LACELIASP-SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
            +  EL+A P  +++ DEPT+GLD+  A  + + +R+LA  G  ++C+IHQP   ++ +FD
Sbjct: 912  IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFD 971

Query: 179  DIVLLTEG-KLVYAGPARDEP---LAYFSRFG-YTCPDHVNPAEFLADLISVDY-SSAES 232
             ++LL +G + VY G   +     + YF + G   CP+  NPAE++ ++I     + A  
Sbjct: 972  RLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQ 1031

Query: 233  VYLSQKRIDSLAE---SFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWL 289
             Y    R  S  +   + L R    L  +   +                     W QF L
Sbjct: 1032 DYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAAS---------LWYQFKL 1082

Query: 290  LLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAI--NT 347
            +L R + Q  R       +  ++I +A+  G  F+++G S   +Q++M  + +A +  N 
Sbjct: 1083 VLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNP 1142

Query: 348  AMAALTKTVGVFPKERAIVD-RERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAV---- 402
             +      +  F  +R + + RER   +++   ++ +++  EIP    + L+ G +    
Sbjct: 1143 LIQQY---LPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIP----YNLVAGTIFFFI 1195

Query: 403  -LYPM------ARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLM 455
              YP+      ++      R   F  + T+     S +G  V +  P  + A  +   L 
Sbjct: 1196 WYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLF 1255

Query: 456  TVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGL 491
            T+ + F G        P  + ++ R S   +  Q L
Sbjct: 1256 TMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQAL 1291

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  202 bits (515), Expect = 4e-55
 Identities = 150/517 (29%), Positives = 264/517 (51%), Gaps = 42/517 (8%)

Query: 1    MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFA----YVRQEDLFFS 56
            MG SG+GKTTL++VLAG+       ++ G + ++G P   K   FA    Y  Q D+   
Sbjct: 912  MGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISGFP--KKQETFARISGYCEQNDIHSP 966

Query: 57   QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
            Q+TVRE+L  +A L+LP+ +S EE+  +V+ ++  + L +  D+ VG   V G+S  ++K
Sbjct: 967  QVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026

Query: 117  RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
            RL++A EL+A+PS+I+ DEPT+GLDA  A  VM  +R     G TV+C+IHQP   ++  
Sbjct: 1027 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1086

Query: 177  FDDIVLLTE-GKLVYAGP-ARD--EPLAYFSRFGYT--CPDHVNPAEFLADLISVDYSSA 230
            FD+++L+   G+++Y+GP  R+  + + YF          +  NPA ++ ++ S+    A
Sbjct: 1087 FDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSL----A 1142

Query: 231  ESVYLSQKRIDSLAE-----SFLQRSSTI---LYASPLISREGYKKSKLQKRTIVKKKGG 282
              V L    ID  AE     S  QR+  +   L   P  + + Y  ++  + T  + K  
Sbjct: 1143 AEVKLG---ID-FAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSC 1198

Query: 283  WWRQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDR---MGL 339
             W+Q+W   R      S D   N VR   ++A+A++ G++FW++G  +++  D    +G 
Sbjct: 1199 LWKQWWTYWR------SPD--YNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGA 1250

Query: 340  LQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMF 399
            +  A +   +   +    +   ER +  RERA G Y+  PY +++++ EIP        +
Sbjct: 1251 MYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYY 1310

Query: 400  GAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFI 459
              ++Y M     T ++F  F  I        +  G+   ++ P  + A     +   +F 
Sbjct: 1311 TLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFN 1370

Query: 460  VFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEF 496
            +F G+++     P  + W   +  + W   GL ++++
Sbjct: 1371 LFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQY 1407

Length = 1470

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  163 bits (415), Expect = 7e-46
 Identities = 78/268 (29%), Positives = 121/268 (45%), Gaps = 27/268 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF----AYVRQEDLFFS 56
           +GP+G+GKTTLL +LAG L  +     SG + V G     +  K      YV QE   + 
Sbjct: 37  LGPNGAGKTTLLKILAGLLKPT-----SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYP 91

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
           +LTVRE L   A L      S EE +E +  LL   GL      +  + KVR +SGG K+
Sbjct: 92  ELTVRENLEFFARLYGL---SKEEAEERIEELLELFGL-----EDKANKKVRTLSGGMKQ 143

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG-HTVICSIHQPRGSVYF 175
           RLS+A  L+  P ++  DEPT+GLD     ++ E LR+LA++G  T++ S H        
Sbjct: 144 RLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEE 202

Query: 176 KFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYL 235
             D +++L +GK++  G   +       +FG      + P       +            
Sbjct: 203 LCDRVIILNDGKIIAEGTPEE----LKEKFGGKGVIELEPERLELAELLEGLKLV----K 254

Query: 236 SQKRIDSLAESFLQRSSTILYASPLISR 263
            ++ +  + E+ L+    I         
Sbjct: 255 GEEELAEILEALLEEGVKIESIEVKEPS 282

Length = 293

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score =  150 bits (380), Expect = 4e-42
 Identities = 71/194 (36%), Positives = 103/194 (53%), Gaps = 42/194 (21%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLT 59
           MG SG+GKTTLL+VLAG+  A     ++G + +NG+P   N      YV Q+D+    LT
Sbjct: 39  MGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLT 95

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           VRE L  +A L                                     RG+S  ++KRL+
Sbjct: 96  VREALRFSALL-------------------------------------RGLSVEQRKRLT 118

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD 179
           +  EL A PS+++ DEPT+GLD+  A  ++  L++LA  G  ++C+IHQP  S++ KFD 
Sbjct: 119 IGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDR 178

Query: 180 IVLLTE-GKLVYAG 192
           ++LL   GK VY G
Sbjct: 179 LLLLKRGGKTVYFG 192

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score =  148 bits (376), Expect = 3e-41
 Identities = 63/213 (29%), Positives = 115/213 (53%), Gaps = 4/213 (1%)

Query: 285 RQFWLLLRRAWMQASRDGPTNKV-RARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVA 343
            Q   LL+R +++  RD     + R    +  A++FG+VF  +  S     +R GLL  +
Sbjct: 1   TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSL-GGLNRPGLLFFS 59

Query: 344 AINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVL 403
            +  A ++LT    VF +ER +++RE A   Y+   Y+L+K++ E+P+     ++F  ++
Sbjct: 60  ILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIV 119

Query: 404 YPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGG 463
           Y M  L    SRF  F  ++ + + AAS +GL + A+ P+ E A  +GP L+   ++  G
Sbjct: 120 YFMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSG 177

Query: 464 YYVNADNTPIIFRWIPRVSLIRWAFQGLCINEF 496
           +++  D+ P   +WI  ++ + +A + L  NEF
Sbjct: 178 FFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210

Length = 210

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  148 bits (374), Expect = 4e-37
 Identities = 158/582 (27%), Positives = 259/582 (44%), Gaps = 105/582 (18%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF---------AYVRQE 51
           +GP  SGKTTLL  LAG+L   P L +SG +  NG       Y+          AY+ Q 
Sbjct: 197 LGPPSSGKTTLLLALAGKL--DPSLKVSGEITYNG-------YRLNEFVPRKTSAYISQN 247

Query: 52  DLFFSQLTVRETLSLAAELQ-------LPEILSVEERD------------------EYVN 86
           D+    +TV+ETL  +A  Q       L   L+  E+D                  E V 
Sbjct: 248 DVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVK 307

Query: 87  SLLFK------LGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS-VIYADEPTTG 139
           S L        LGL  C D+ VGD  +RGISGG+KKR++   E+I  P+  ++ DE +TG
Sbjct: 308 SSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG-EMIVGPTKTLFMDEISTG 366

Query: 140 LDAFQAEKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEP 198
           LD+    ++++ L+Q+      TV+ S+ QP    +  FDDI+LL+EG++VY GP RD  
Sbjct: 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGP-RDHI 425

Query: 199 LAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQKR------IDSLAESF----- 247
           L +F   G+ CP+    A+FL ++ S      E  +  + +      +   AE F     
Sbjct: 426 LEFFESCGFKCPERKGTADFLQEVTS--KKDQEQYWADRNKPYRYISVSEFAERFKSFHV 483

Query: 248 -LQRSSTILYASPLISREGYKKSKLQKRTIVKK----KGGWWRQFWLLLRR-AWMQASRD 301
            +Q  + +  + P    + +K + +  +  V K    K  W ++ WLL++R A++   + 
Sbjct: 484 GMQLENEL--SVPFDKSQSHKAALVFSKYSVPKMELLKACWDKE-WLLMKRNAFVYVFK- 539

Query: 302 GPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAM-----------A 350
             T ++     I  A I  +VF R      + +D  G L + A+  +M           A
Sbjct: 540 --TVQI-----IIVAAIASTVFLRTEMHTRNEED--GALYIGALLFSMIINMFNGFAELA 590

Query: 351 ALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLH 410
            + + + VF K+R ++       ++ L  +LL      IP+     +++  + Y      
Sbjct: 591 LMIQRLPVFYKQRDLL--FHPPWTFTLPTFLL-----GIPISIIESVVWVVITYYSIGFA 643

Query: 411 PTLSRFGK-FCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNAD 469
           P  SRF K    +  ++  AA    L          A       L+ VF++ GG+ +   
Sbjct: 644 PEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLL-GGFILPKG 702

Query: 470 NTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQT 511
             P  + W   VS + + F  L +NE    ++ ++ + D  T
Sbjct: 703 EIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNST 744

Length = 1470

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score =  131 bits (331), Expect = 3e-35
 Identities = 63/197 (31%), Positives = 95/197 (48%), Gaps = 38/197 (19%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF----AYVRQEDLFFS 56
           +G  GSG +TLL  LA +      + + G +  NG P    A K+     YV +ED+ F 
Sbjct: 39  LGRPGSGCSTLLKALANRT--EGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFP 96

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
            LTVRETL  A   +                               G+  VRGISGGE+K
Sbjct: 97  TLTVRETLDFALRCK-------------------------------GNEFVRGISGGERK 125

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYF 175
           R+S+A  L++  SV+  D  T GLD+  A ++++ +R +A     T   S++Q    +Y 
Sbjct: 126 RVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYD 185

Query: 176 KFDDIVLLTEGKLVYAG 192
            FD +++L EG+ +Y G
Sbjct: 186 LFDKVLVLYEGRQIYYG 202

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  121 bits (307), Expect = 1e-31
 Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFA----YVRQE-DLF 54
           +GP+GSGK+TLL +L G L  +     SG + V+GK  +     +       V Q  D  
Sbjct: 33  VGPNGSGKSTLLRLLNGLLGPT-----SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQ 87

Query: 55  FSQLTVRETLSLAAE-LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
           F   TV E ++   E L LPE    EE +E V   L  +GL    D +        +SGG
Sbjct: 88  FFGPTVEEEVAFGLENLGLPE----EEIEERVEEALELVGLEGLRDRSPFT-----LSGG 138

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
           +K+R+++A  L   P ++  DEPT GLD     +++E L++L  +G T+I   H     +
Sbjct: 139 QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLL 198

Query: 174 YFKFDDIVLLTEGK 187
               D +++L +GK
Sbjct: 199 EL-ADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score =  114 bits (289), Expect = 5e-29
 Identities = 68/198 (34%), Positives = 106/198 (53%), Gaps = 24/198 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK-FAYVRQEDL-FFSQ- 57
           +GPSGSGK+TLLN+L G  +  P    SG + +NGK  +  + K  A +R++ + F  Q 
Sbjct: 37  VGPSGSGKSTLLNLLGG--LDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQN 91

Query: 58  ------LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
                 LTV E + L   +      S   R      LL  LGL    +  +   K   +S
Sbjct: 92  FNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGL----EDRLLKKKPSELS 144

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPR 170
           GG+++R+++A  LI +P +I ADEPT  LD+  A++V+E LR+L ++ G T+I   H P 
Sbjct: 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE 204

Query: 171 GSVYFKFDDIVLLTEGKL 188
             +    D ++ L +GK+
Sbjct: 205 --LAKYADRVIELKDGKI 220

Length = 226

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score =  111 bits (279), Expect = 8e-28
 Identities = 63/198 (31%), Positives = 97/198 (48%), Gaps = 25/198 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQE 51
           +GPSGSGK+TLLN+L G  +  P    SG + V+G   S          +     +V Q 
Sbjct: 36  VGPSGSGKSTLLNILGG--LDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQS 90

Query: 52  DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
                 LT  E + L   L     +  +ER E    LL ++GL    +    +     +S
Sbjct: 91  FNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYPSE-----LS 142

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICSIHQPR 170
           GG+++R+++A  L   P +I ADEPT  LD+   ++VME LR+L  + G T++   H P 
Sbjct: 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202

Query: 171 GSVYFKFDDIVLLTEGKL 188
             +    D I+ L +GK+
Sbjct: 203 --LAEYADRIIELRDGKI 218

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score =  109 bits (274), Expect = 3e-27
 Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 19/195 (9%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF----AYVRQEDLFFSQ 57
           GP+G+GKTTL+ +LA     S     SG + ++G+    +  K      Y+ QE   +  
Sbjct: 32  GPNGAGKTTLMRILATLTPPS-----SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPN 86

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
            TVRE L   A L+   I S E     V+ +L  + L      +    K+  +SGG ++R
Sbjct: 87  FTVREFLDYIAWLK--GIPSKEV-KARVDEVLELVNL-----GDRAKKKIGSLSGGMRRR 138

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           + +A  L+  PS++  DEPT GLD  +  +    L +L +D   VI S H     V    
Sbjct: 139 VGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGED-RIVILSTHI-VEDVESLC 196

Query: 178 DDIVLLTEGKLVYAG 192
           + + +L +GKLV+ G
Sbjct: 197 NQVAVLNKGKLVFEG 211

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  107 bits (271), Expect = 9e-27
 Identities = 65/199 (32%), Positives = 98/199 (49%), Gaps = 25/199 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQL-MASPRLHLSGLLEVNGKPSSNKAYK-FAYVRQEDLFFSQL 58
           +G +G+GKTT L +L G+L   S   +++G    + +     A +   Y  Q D  F +L
Sbjct: 34  LGHNGAGKTTTLKMLTGELRPTSGTAYINGY---SIRTDRKAARQSLGYCPQFDALFDEL 90

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
           TVRE L   A L+    L   E  E V  LL  LGL   A+      + R +SGG K++L
Sbjct: 91  TVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANK-----RARTLSGGMKRKL 142

Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR-----GSV 173
           SLA  LI  PSV+  DEPT+GLD      + + + ++ + G ++I + H           
Sbjct: 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALC-- 199

Query: 174 YFKFDDIVLLTEGKLVYAG 192
               D I ++++GKL   G
Sbjct: 200 ----DRIAIMSDGKLRCIG 214

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  106 bits (268), Expect = 3e-26
 Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 24/204 (11%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-------DLF 54
           GP+GSGK+TLL +L G L        SG + V+G  +S++       ++        D  
Sbjct: 37  GPNGSGKSTLLKLLNGLL-----KPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQ 91

Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
               TV + ++   E  L   L  EE +E V   L  +GL       + D     +SGG+
Sbjct: 92  LFGPTVEDEVAFGLE-NLG--LPREEIEERVAEALELVGL-----EELLDRPPFNLSGGQ 143

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH-TVICSIHQPRGSV 173
           K+R+++A  L   P ++  DEPT GLD     +++E L++L ++G  T+I   H     +
Sbjct: 144 KQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTH--DLEL 201

Query: 174 YFKFDD-IVLLTEGKLVYAGPARD 196
             ++ D +V+L +GK++  G   +
Sbjct: 202 VLEYADRVVVLDDGKILADGDPAE 225

Length = 235

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  103 bits (260), Expect = 1e-25
 Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 54/192 (28%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK----FAYVRQEDLFFS 56
           +GP+G+GKTTL+ ++ G L        SG ++V GK    +  +      Y+ +E   + 
Sbjct: 32  LGPNGAGKTTLIKIILGLLKPD-----SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYE 86

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
            LTVRE L L                                            SGG K+
Sbjct: 87  NLTVRENLKL--------------------------------------------SGGMKQ 102

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           RL+LA  L+  P ++  DEPT+GLD     +  E LR+L ++G T++ S H         
Sbjct: 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERL 161

Query: 177 FDDIVLLTEGKL 188
            D + +L  G++
Sbjct: 162 CDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score =  104 bits (262), Expect = 1e-25
 Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 17/195 (8%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQ--LT 59
           GP+G+GK+TLL  + G L  +     SG + V GKP   +  +  YV Q         ++
Sbjct: 32  GPNGAGKSTLLKAILGLLKPT-----SGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPIS 86

Query: 60  VRETLSLA--AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           VR+ + +       L   LS  ++ + V+  L ++GL   AD  +G+      SGG+++R
Sbjct: 87  VRDVVLMGLYGHKGLFRRLSKADKAK-VDEALERVGLSELADRQIGEL-----SGGQQQR 140

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           + LA  L+  P ++  DEP  G+D    E + E LR+L ++G T++   H   G V   F
Sbjct: 141 VLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYF 199

Query: 178 DDIVLLTEGKLVYAG 192
           D ++LL    +V +G
Sbjct: 200 DRVLLL-NRTVVASG 213

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score =   99 bits (250), Expect = 5e-24
 Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 22/178 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK----PSSNKAYKF-----AYVRQE 51
           +G SGSGK+TLLN++   L+       SG + +NG+     +S KA KF      Y+ Q 
Sbjct: 30  IGESGSGKSTLLNIIG--LLEKFD---SGQVYLNGQETPPLNSKKASKFRREKLGYLFQN 84

Query: 52  DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
                  TV E L L  + +    LS +E+ E     L K+GL     +     K+  +S
Sbjct: 85  FALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGL-----NLKLKQKIYELS 136

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           GGE++R++LA  ++  P +I ADEPT  LD    ++V++ L +L  +G T+I   H P
Sbjct: 137 GGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP 194

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 97.7 bits (244), Expect = 7e-24
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 60/187 (32%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +GP+GSGK+TLL  +AG L  +     SG + ++GK  +    +   +R+   +  QL  
Sbjct: 31  VGPNGSGKSTLLRAIAGLLKPT-----SGEILIDGKDIAKLPLEE--LRRRIGYVPQL-- 81

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
                                                             SGG+++R++L
Sbjct: 82  --------------------------------------------------SGGQRQRVAL 91

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           A  L+ +P ++  DEPT+GLD    E+++E LR+LA++G TVI   H P  +     D +
Sbjct: 92  ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRV 150

Query: 181 VLLTEGK 187
           ++L +GK
Sbjct: 151 IVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =   99 bits (250), Expect = 1e-23
 Identities = 60/195 (30%), Positives = 94/195 (48%), Gaps = 21/195 (10%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           GPSG GK+TLL ++AG    +     SG + ++G+P +       YV QED     LTV 
Sbjct: 36  GPSGCGKSTLLRLIAGLEKPT-----SGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVL 90

Query: 62  ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA 121
           + ++L  EL+     S  E  E    LL  +GL     +   D     +SGG ++R+++A
Sbjct: 91  DNVALGLELR---GKSKAEARERAKELLELVGL-----AGFEDKYPHQLSGGMRQRVAIA 142

Query: 122 CELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDI 180
             L   P ++  DEP   LDA   E++ + L +L ++   TV+   H    +VY   D +
Sbjct: 143 RALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLA-DRV 201

Query: 181 VLLTEGKLVYAGPAR 195
           V+L+        P R
Sbjct: 202 VVLS------NRPGR 210

Length = 248

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 99.2 bits (248), Expect = 3e-23
 Identities = 67/206 (32%), Positives = 99/206 (48%), Gaps = 26/206 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK-----FAYVRQEDLFFS 56
           GP+GSGK+TLL  LAG L        SG + ++GK  ++ + K      AYV Q      
Sbjct: 35  GPNGSGKSTLLKCLAGLLKPK-----SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89

Query: 57  QLTVRETLSL-AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
            LTV E + L             +E +E V   L  LGL   AD  V +     +SGGE+
Sbjct: 90  GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGER 144

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQP----R 170
           +R+ +A  L     ++  DEPT+ LD     +V+E LR L ++ G TV+  +H      R
Sbjct: 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAAR 204

Query: 171 GSVYFKFDDIVLLTEGKLVYAGPARD 196
            +     D ++LL +GK+V  G   +
Sbjct: 205 YA-----DHLILLKDGKIVAQGTPEE 225

Length = 258

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 97.5 bits (244), Expect = 4e-23
 Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 14/163 (8%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           GPSG GK+TLL ++AG    +     SG + V+G+P +       YV Q+D     LTV 
Sbjct: 37  GPSGCGKSTLLRIIAGLERPT-----SGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVL 91

Query: 62  ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA 121
           + ++L  ELQ    +   E  E    LL  +GL     S   +A    +SGG ++R++LA
Sbjct: 92  DNVALGLELQG---VPKAEARERAEELLELVGL-----SGFENAYPHQLSGGMRQRVALA 143

Query: 122 CELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVI 163
             L   P V+  DEP + LDA   E++ E L  +  + G TV+
Sbjct: 144 RALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVL 186

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 97.7 bits (244), Expect = 8e-23
 Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 21/203 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--KAYKFAYVRQ---EDLFF 55
           +GP+G+GK+TLL  + G L  S     SG +++ GKP     K  +  YV Q    D  F
Sbjct: 36  IGPNGAGKSTLLKAILGLLKPS-----SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSF 90

Query: 56  SQLTVRETLSLAA--ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
             +TV++ + L    +      L+ +++++ V+  L ++G+    D  +G+     +SGG
Sbjct: 91  P-ITVKDVVLLGRYGKKGWFRRLNKKDKEK-VDEALERVGMEDLRDRQIGE-----LSGG 143

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
           +K+R+ LA  L  +P ++  DEP TG+D    +++ + L++L Q+G TV+   H   G V
Sbjct: 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLV 202

Query: 174 YFKFDDIVLLTEGKLVYAGPARD 196
              FD ++ L    L+ +GP  +
Sbjct: 203 MAYFDRVICL-NRHLIASGPPEE 224

Length = 254

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 93.0 bits (232), Expect = 2e-21
 Identities = 60/205 (29%), Positives = 91/205 (44%), Gaps = 25/205 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-------KFAYVRQEDL 53
           +GPSG GK+TLL +L       P     G + ++GK   +          +   V Q+  
Sbjct: 32  IGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91

Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGD-AKVRGISG 112
            F   ++ + ++    L+L  I   EE DE V   L K  L       V D     G+SG
Sbjct: 92  PFP-GSIYDNVAYG--LRLHGIKLKEELDERVEEALRKAAL----WDEVKDRLHALGLSG 144

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP--- 169
           G+++RL LA  L   P V+  DEPT+ LD     K+ E + +L ++ +T++   H     
Sbjct: 145 GQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQA 203

Query: 170 -RGSVYFKFDDIVLLTEGKLVYAGP 193
            R +     D    L  G+LV  GP
Sbjct: 204 ARVA-----DRTAFLLNGRLVEFGP 223

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 92.5 bits (231), Expect = 3e-21
 Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 23/175 (13%)

Query: 2   GPSGSGKTTLLNVLAGQLMASP-RLHLSGLLEVNGKPSSNKA-----YKFAYVRQEDLFF 55
           GP+G+GKTTL N+++G L  +   +   G  ++ G P    A       F   R     F
Sbjct: 33  GPNGAGKTTLFNLISGFLRPTSGSVLFDGE-DITGLPPHEIARLGIGRTFQIPR----LF 87

Query: 56  SQLTVRETLSLAAELQLPEIL-------SVEERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
            +LTV E + +AA+ +    L          E  E    LL ++GL     +++ D    
Sbjct: 88  PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-----ADLADRPAG 142

Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
            +S G+++RL +A  L   P ++  DEP  GL+  + E++ E +R+L + G TV+
Sbjct: 143 ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVL 197

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 96.6 bits (241), Expect = 5e-21
 Identities = 63/198 (31%), Positives = 104/198 (52%), Gaps = 22/198 (11%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-----KFAYVRQEDLFFS 56
           G SG+GK+TLLN+L G L  +      G + VNG    + +      + ++V Q    F+
Sbjct: 354 GASGAGKSTLLNLLLGFLAPT-----QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA 408

Query: 57  QLTVRETLSLAAE-LQLPEILSVEERDEYVNSLLFK-LGLVSCADSNVGDAKVRGISGGE 114
             T+RE + LA       EI++  ++   +   + K  GL    D+ +G+    G+SGG+
Sbjct: 409 G-TIRENILLARPDASDEEIIAALDQA-GLLEFVPKPDGL----DTVIGEGG-AGLSGGQ 461

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
            +RL+LA  L++  S++  DEPT  LDA   + +++AL++LA+   TV+   H+      
Sbjct: 462 AQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRL--EDA 518

Query: 175 FKFDDIVLLTEGKLVYAG 192
              D IV+L  G+LV  G
Sbjct: 519 ADADRIVVLDNGRLVEQG 536

Length = 559

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 91.5 bits (228), Expect = 9e-21
 Identities = 60/211 (28%), Positives = 109/211 (51%), Gaps = 29/211 (13%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG------KPSSNKAY--KFAYVRQEDL 53
           GPSG+GK+TLL  L G +  +     SG + ++G      K  + +    +   + Q+  
Sbjct: 34  GPSGAGKSTLLRCLNGLVEPT-----SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFN 88

Query: 54  FFSQLTVRETLSLAAEL-------QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAK 106
              +L+V E + L+  L        L  +   EE+   + + L ++GL+  A       +
Sbjct: 89  LIERLSVLENV-LSGRLGRRSTWRSLFGLFPKEEKQRAL-AALERVGLLDKAY-----QR 141

Query: 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DGHTVICS 165
              +SGG+++R+++A  L+  P +I ADEP   LD   + +VM+ L+++ + +G TVI S
Sbjct: 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVS 201

Query: 166 IHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196
           +HQ   +  +  D IV L +G++V+ GP  +
Sbjct: 202 LHQVDLAREY-ADRIVGLKDGRIVFDGPPAE 231

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 90.4 bits (225), Expect = 1e-20
 Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 21/195 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVR---QEDLFFSQ 57
           +GP+G+GKTT + ++ G +        SG +  +GK           +    +   F+  
Sbjct: 32  LGPNGAGKTTTMKIILGLIKPD-----SGEITFDGKSYQKNIEALRRIGALIEAPGFYPN 86

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           LT RE L L A L          R + ++ +L  +GL      +    KV+G S G K+R
Sbjct: 87  LTARENLRLLARLLG-------IRKKRIDEVLDVVGL-----KDSAKKKVKGFSLGMKQR 134

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           L +A  L+ +P ++  DEPT GLD    +++ E +  L   G TV+ S H     +    
Sbjct: 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL-LSEIQKVA 193

Query: 178 DDIVLLTEGKLVYAG 192
           D I ++ +GKL+  G
Sbjct: 194 DRIGIINKGKLIEEG 208

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 89.3 bits (222), Expect = 3e-20
 Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 26/202 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP--SSNKAY-------KFAYVRQE 51
            G SG+GK+TLL  +AG           G + +NG     S K         K   V Q+
Sbjct: 29  FGASGAGKSTLLRCIAGLEKPD-----GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ 83

Query: 52  DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
              F  L VRE L+      L    + E+R   V+ LL  LGL      ++ +     +S
Sbjct: 84  YALFPHLNVRENLAFG----LKRKRNREDRIS-VDELLDLLGL-----DHLLNRYPAQLS 133

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH-TVICSIHQPR 170
           GGEK+R++LA  L A P ++  DEP + LD     +++  L+Q+ ++ +  VI   H   
Sbjct: 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193

Query: 171 GSVYFKFDDIVLLTEGKLVYAG 192
               +  D IV++ +G+L Y G
Sbjct: 194 -EAEYLADRIVVMEDGRLQYIG 214

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 33/198 (16%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY--KFAYVRQE--DLFFS 56
            G +G+GKTTL  +LAG +  S     SG + +NGKP   K       YV Q+     F+
Sbjct: 32  TGKNGAGKTTLAKILAGLIKES-----SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFT 86

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
             +VRE L L  +        ++  +E   ++L  L L +  + +        +SGG+K+
Sbjct: 87  D-SVREELLLGLKE-------LDAGNEQAETVLKDLDLYALKERHPLS-----LSGGQKQ 133

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           RL++A  L++   ++  DEPT+GLD    E+V E +R+LA  G  VI   H       ++
Sbjct: 134 RLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHD------YE 187

Query: 177 F-----DDIVLLTEGKLV 189
           F     D ++LL  G +V
Sbjct: 188 FLAKVCDRVLLLANGAIV 205

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 89.1 bits (222), Expect = 4e-20
 Identities = 66/207 (31%), Positives = 97/207 (46%), Gaps = 26/207 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP----SSNKAY----KFAYVRQED 52
           +GPSGSGK+TLL ++ G L   P    SG + ++G+     S  + Y    +   + Q  
Sbjct: 32  IGPSGSGKSTLLRLIVGLL--RPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSG 86

Query: 53  LFFSQLTVRETLS--LAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
             F  LTV E ++  L    +L E    EE  E V   L KL  V        D     +
Sbjct: 87  ALFDSLTVFENVAFPLREHTRLSE----EEIREIV---LEKLEAVGL--RGAEDLYPAEL 137

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQP 169
           SGG KKR++LA  L   P ++  DEPT GLD   +  + + +R L ++ G T I   H  
Sbjct: 138 SGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD- 196

Query: 170 RGSVYFKFDDIVLLTEGKLVYAGPARD 196
             + +   D I +L +GK+V  G   +
Sbjct: 197 LDTAFAIADRIAVLYDGKIVAEGTPEE 223

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 91.2 bits (227), Expect = 6e-20
 Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 17/200 (8%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYK--FAYVRQEDLFFSQ 57
           +GPSG GKTTLL ++AG     P    SG + ++G+  ++    K     V Q    F  
Sbjct: 37  LGPSGCGKTTLLRMIAG--FEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPH 91

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           +TV E  ++A  L++ + L   E    V   L  +GL         D K   +SGG+++R
Sbjct: 92  MTVEE--NVAFGLKVRKKLKKAEIKARVEEALELVGL-----EGFADRKPHQLSGGQQQR 144

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFK 176
           ++LA  L+  P V+  DEP + LDA   E++ + L++L ++ G T +   H  +      
Sbjct: 145 VALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTH-DQEEALAM 203

Query: 177 FDDIVLLTEGKLVYAGPARD 196
            D I ++ +G++   G   +
Sbjct: 204 SDRIAVMNDGRIEQVGTPEE 223

Length = 352

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 87.4 bits (217), Expect = 1e-19
 Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 23/197 (11%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--------FAYVRQEDL 53
           GPSGSGKTTLL      L+   R    G L+V G+     + K          Y+ Q   
Sbjct: 38  GPSGSGKTTLLT-----LIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHN 92

Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
               LT R+ + +A ELQ    LS +E  E   ++L  +GL      +  D     +SGG
Sbjct: 93  LLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGL-----GDHLDYYPHNLSGG 145

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGS 172
           +K+R+++A  L+  P ++ ADEPT  LD+     V+E +++LA++ G T++   H  R  
Sbjct: 146 QKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-- 203

Query: 173 VYFKFDDIVLLTEGKLV 189
           +    D IV + +GKL+
Sbjct: 204 ILDVADRIVHMEDGKLL 220

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 86.1 bits (214), Expect = 1e-19
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 56/195 (28%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-------KFAYVRQEDL 53
           +GPSGSGK+TLL  +AG  +  P    SG + ++G+  ++          +   V Q+  
Sbjct: 32  LGPSGSGKSTLLRCIAG--LEEPD---SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFA 86

Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
            F  LTV E ++L                                          G+SGG
Sbjct: 87  LFPHLTVLENIAL------------------------------------------GLSGG 104

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIHQPRGS 172
           +++R++LA  L   P V+  DEPT+ LD     +V   L+ L AQ G TV+   H    +
Sbjct: 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164

Query: 173 VYFKFDDIVLLTEGK 187
                D +V+L +GK
Sbjct: 165 ARLA-DRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 87.1 bits (216), Expect = 1e-19
 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 25/176 (14%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKFAYVR-------QEDL 53
           GPSG+GK+TLL ++       P    SG + VNG+  S+ +     Y+R       Q+  
Sbjct: 34  GPSGAGKSTLLKLIYK--EELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFR 88

Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERD--EYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
                 V E ++ A E     +  V  R+  + V + L  +GL     S+   A    +S
Sbjct: 89  LLPDRNVYENVAFALE-----VTGVPPREIRKRVPAALELVGL-----SHKHRALPAELS 138

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           GGE++R+++A  ++ SP+++ ADEPT  LD     ++M  L+++ + G TV+ + H
Sbjct: 139 GGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 87.0 bits (216), Expect = 2e-19
 Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 15/193 (7%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-KFAYVRQEDLFFSQLT 59
           +GP+G+GKTT + ++ G ++       SG +  +GKP    A  +  Y+ +E   + ++ 
Sbjct: 32  LGPNGAGKTTTIRMILGIILPD-----SGEVLFDGKPLDIAARNRIGYLPEERGLYPKMK 86

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           V + L   A+L+    L  EE    ++  L +L L     S   + +V  +S G ++++ 
Sbjct: 87  VIDQLVYLAQLKG---LKKEEARRRIDEWLERLEL-----SEYANKRVEELSKGNQQKVQ 138

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD 179
               +I  P ++  DEP +GLD    E + + +R+LA+ G TVI S HQ    V    D 
Sbjct: 139 FIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ-MELVEELCDR 197

Query: 180 IVLLTEGKLVYAG 192
           ++LL +G+ V  G
Sbjct: 198 VLLLNKGRAVLYG 210

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 87.7 bits (218), Expect = 2e-19
 Identities = 65/216 (30%), Positives = 98/216 (45%), Gaps = 39/216 (18%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NKAYKFAYVRQEDLFFSQLT 59
           GPSG+GK+TLL  L G +  +     SG +  NG   +           R   + F Q  
Sbjct: 37  GPSGAGKSTLLRSLNGLVDPT-----SGEILFNGVQITKLKGKELRKLRRDIGMIFQQF- 90

Query: 60  VRETLSLAAELQLPEILSVEE-----RDEYVNSLLFKLGLVSCADS----------NVGD 104
                       L   LSV E     R  Y ++     GL S  D            + D
Sbjct: 91  -----------NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD 139

Query: 105 ---AKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DGH 160
               +   +SGG+++R+++A  L+  P +I ADEP   LD   A+KVM+ L+ + Q DG 
Sbjct: 140 KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGI 199

Query: 161 TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196
           TVI ++HQ   +  +  D I+ L  G++V+ GPA +
Sbjct: 200 TVIVNLHQVDLAKKY-ADRIIGLKAGRIVFDGPASE 234

Length = 258

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 87.5 bits (217), Expect = 3e-19
 Identities = 58/198 (29%), Positives = 97/198 (48%), Gaps = 22/198 (11%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQ------EDLF 54
           +G +G+GKTTLL ++A  L+       SG + ++G  +          R+      E   
Sbjct: 34  LGENGAGKTTLLRMIATLLIPD-----SGKVTIDGVDTVRDPSF--VRRKIGVLFGERGL 86

Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
           +++LT RE L   A L     LS +E    +  L  +L L+   D      +V   S G 
Sbjct: 87  YARLTARENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDR-----RVGEFSTGM 138

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
           K+++++A  L+  PS++  DEPT+GLD     K  + ++QL  +G  VI S H  +  V 
Sbjct: 139 KQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVE 197

Query: 175 FKFDDIVLLTEGKLVYAG 192
              D +++L +G++V  G
Sbjct: 198 ALCDRVIVLHKGEVVLEG 215

Length = 245

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 88.6 bits (220), Expect = 5e-19
 Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 21/214 (9%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP---SSNK---AYKFAYVRQEDLFF 55
           GPSG+GK+TLL ++AG          +G + +NG+     SN      K  +V Q    F
Sbjct: 35  GPSGAGKSTLLRIIAGLETPD-----AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
             +TV + ++   +++  E  S  E    V  LL  + L       + D     +SGG++
Sbjct: 90  PHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQL-----EGLADRYPAQLSGGQR 143

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA-LRQLAQD-GHTVICSIHQPRGSV 173
           +R++LA  L   P V+  DEP   LDA +  K +   LR+L    G T +   H      
Sbjct: 144 QRVALARALAVEPKVLLLDEPFGALDA-KVRKELRRWLRKLHDRLGVTTVFVTHDQE-EA 201

Query: 174 YFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGY 207
               D +V+L +G++   GP  +      SRF  
Sbjct: 202 LELADRVVVLNQGRIEQVGPPDEVYDHPASRFVA 235

Length = 345

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 83.6 bits (208), Expect = 1e-18
 Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 56/199 (28%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-----SSNKAYKFAYVRQEDLFF 55
           +GP+G+GK+TLL  LAG L  S     SG + ++GK          A K AYV Q     
Sbjct: 31  LGPNGAGKSTLLKTLAGLLKPS-----SGEILLDGKDLASLSPKELARKIAYVPQ----- 80

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
             L +     LA              D   N L                      SGGE+
Sbjct: 81  -ALELLGLAHLA--------------DRPFNEL----------------------SGGER 103

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVY 174
           +R+ LA  L   P ++  DEPT+ LD     +++E LR+LA++ G TV+  +H    ++ 
Sbjct: 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL--NLA 161

Query: 175 FKF-DDIVLLTEGKLVYAG 192
            ++ D ++LL +G++V  G
Sbjct: 162 ARYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 84.1 bits (209), Expect = 1e-18
 Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 18/196 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYK--FAYVRQEDLFFSQ 57
           +GPSG GKTTLL ++AG          SG + ++G+  +     +     V Q+   F  
Sbjct: 32  LGPSGCGKTTLLRLIAGLERPD-----SGEILIDGRDVTGVPPERRNIGMVFQDYALFPH 86

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           LTV E ++   +L+    +   E    V  LL  +GL       + +     +SGG+++R
Sbjct: 87  LTVAENIAFGLKLRG---VPKAEIRARVRELLELVGL-----EGLLNRYPHELSGGQQQR 138

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIHQPRGSVYFK 176
           ++LA  L   PS++  DEP + LDA   E++ E L++L  + G T I   H         
Sbjct: 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALAL 197

Query: 177 FDDIVLLTEGKLVYAG 192
            D I ++ EG++V  G
Sbjct: 198 ADRIAVMNEGRIVQVG 213

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 83.5 bits (207), Expect = 3e-18
 Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 21/177 (11%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS---NKAY-----KFAYVRQEDL 53
           GPSG+GKTTLL +L G L  S      G + + G+  +    +       +   V Q+  
Sbjct: 35  GPSGAGKTTLLKLLYGALTPS-----RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFR 89

Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
                TV E ++L  E++  +   ++ R   V + L ++GL   AD+         +SGG
Sbjct: 90  LLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEHKADAFPEQ-----LSGG 141

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
           E++R+++A  ++ SP ++ ADEPT  LD   +E++++ L++L + G TVI + H   
Sbjct: 142 EQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 41/183 (22%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAY--------VRQED 52
           +GP+G+GKTT + +L   L                +P+S  A    Y        VR+  
Sbjct: 25  LGPNGAGKTTTIRMLTTLL----------------RPTSGTARVAGYDVVREPRKVRRSI 68

Query: 53  LFFSQ-------LTVRETLSLAAELQ-LPEILSVEERDEYVNSLLFKLGLVSCADSNVGD 104
               Q       LT RE L +   L  LP+    +E +E    LL    L   AD     
Sbjct: 69  GIVPQYASVDEDLTGRENLEMMGRLYGLPK----DEAEERAEELLELFELGEAADR---- 120

Query: 105 AKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVIC 164
             V   SGG ++RL +A  LI  P V++ DEPTTGLD      + + +R L ++G T++ 
Sbjct: 121 -PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILL 179

Query: 165 SIH 167
           + H
Sbjct: 180 TTH 182

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 83.5 bits (207), Expect = 4e-18
 Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 42/209 (20%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK-PSSNKAYKFAYVRQEDLFFSQ-- 57
           +GP+G+GKTT L +L+G L  +     SG + V G  P   +     ++R+  + F Q  
Sbjct: 53  IGPNGAGKTTTLKILSGLLQPT-----SGEVRVAGLVPWKRRK---KFLRRIGVVFGQKT 104

Query: 58  -----LTVRETLSLAAEL-QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
                L V ++  L A +  LP     +  DE     L  L         + D  VR +S
Sbjct: 105 QLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSE--LLDLE-------ELLDTPVRQLS 155

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPR 170
            G++ R  +A  L+  P +++ DEPT GLD    E +   L++  ++ G TV+ + H   
Sbjct: 156 LGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY-- 213

Query: 171 GSVYFKFDDI-------VLLTEGKLVYAG 192
                   DI       +++ +G+L+Y G
Sbjct: 214 ------MKDIEALARRVLVIDKGRLLYDG 236

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 82.9 bits (205), Expect = 6e-18
 Identities = 61/208 (29%), Positives = 100/208 (48%), Gaps = 19/208 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQ 57
           +GPSGSGK+TLL ++AG  +  P    SG + +NG+ ++    +  K  +V Q    F  
Sbjct: 32  LGPSGSGKSTLLRIIAG--LEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKH 86

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           LTVR+ ++   E++      ++ R   V  LL  + L       +GD     +SGG+++R
Sbjct: 87  LTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQL-----EGLGDRYPNQLSGGQRQR 138

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           ++LA  L   P V+  DEP   LDA   +++   LR+L  + H     +   +       
Sbjct: 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVA 198

Query: 178 DDIVLLTEGKLVYAGPAR---DEPLAYF 202
           D IV+++ GK+   G      D P   F
Sbjct: 199 DRIVVMSNGKIEQIGSPDEVYDHPANPF 226

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 86.6 bits (215), Expect = 7e-18
 Identities = 62/177 (35%), Positives = 94/177 (53%), Gaps = 23/177 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-----AYVRQEDLFFS 56
           GPSG+GK+TLLN+L G +  +      G + VNG P ++          A+V Q    F+
Sbjct: 355 GPSGAGKSTLLNLLLGFVDPT-----EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA 409

Query: 57  QLTVRETLSL----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
             T+ E + L    A++ ++ E L     DE+V +L    GL    D+ +G+    G+SG
Sbjct: 410 G-TIAENIRLARPDASDAEIREALERAGLDEFVAAL--PQGL----DTPIGEGG-AGLSG 461

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           G+ +RL+LA   +    ++  DEPT  LDA    +V+EALR LAQ G TV+   H+ 
Sbjct: 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHRL 517

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 83.3 bits (206), Expect = 8e-18
 Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 13/200 (6%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +GP+GSGK+TLL +LAG L           ++++G     +A + A V Q+      LTV
Sbjct: 33  LGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTV 92

Query: 61  RETLSLAAELQLPEI----LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
           R+ ++L    ++P               V+  L +  L   AD ++       +SGGE++
Sbjct: 93  RDVVALG---RIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMST-----LSGGERQ 144

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           R+ +A  L   P ++  DEPT  LD     + +  +R+LA  G TV+ ++H    +  + 
Sbjct: 145 RVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASY- 203

Query: 177 FDDIVLLTEGKLVYAGPARD 196
            D +V+L  G++V AGP R+
Sbjct: 204 CDHVVVLDGGRVVAAGPPRE 223

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 86.6 bits (215), Expect = 9e-18
 Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 25/200 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-----SSNKAYKFAYVRQEDLFFS 56
           G SGSGK+TLL +LAG           G + +NG               + + Q    FS
Sbjct: 371 GRSGSGKSTLLQLLAGAWDPQ-----QGSITLNGVEIASLDEQALRETISVLTQRVHLFS 425

Query: 57  QLTVRETLSLAAE----LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
             T+R+ L LA       +L   L     ++ + S    L      ++ +G+   R +SG
Sbjct: 426 G-TLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGL------NTWLGEGG-RRLSG 477

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
           GE++RL+LA  L+    +   DEPT GLD     +V+  L + A+ G T++   H+ RG 
Sbjct: 478 GERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRGL 536

Query: 173 VYFKFDDIVLLTEGKLVYAG 192
                D I++L  GK++  G
Sbjct: 537 ER--MDRIIVLDNGKIIEEG 554

Length = 573

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 17/204 (8%)

Query: 2   GPSGSGKTTLLNVLAG-QLMASPRLHLSG--LLEVNGKPSSNKAYKFAYVRQEDLFFSQL 58
           GPSG+GK+TLL  +      +S  + L G  + ++ GK       +   + Q      +L
Sbjct: 35  GPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERL 94

Query: 59  TVRETL---SLAAELQLPEILSVEERDEYVN--SLLFKLGLVSCADSNVGDAKVRGISGG 113
           TV E +    L  +     +L     ++     S L ++GL   A       +   +SGG
Sbjct: 95  TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ-----RADQLSGG 149

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DGHTVICSIHQPRGS 172
           +++R+++A  L   P +I ADEP   LD   +++VM+ L+++ + DG TVI ++HQ    
Sbjct: 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV--D 207

Query: 173 VYFKF-DDIVLLTEGKLVYAGPAR 195
           +  K+ D IV L  G++V+ G   
Sbjct: 208 LAKKYADRIVGLKAGEIVFDGAPS 231

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 80.1 bits (199), Expect = 1e-17
 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 59/191 (30%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-----SSNKAYKFAYVRQEDLFFS 56
           GPSGSGK+TLL +L      +     SG + ++G         +     AYV Q+   FS
Sbjct: 35  GPSGSGKSTLLKLLLRLYDPT-----SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS 89

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
             T+RE                                      N+       +SGG+++
Sbjct: 90  G-TIRE--------------------------------------NI-------LSGGQRQ 103

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           R+++A  L+  P ++  DE T+ LD      ++EALR LA+ G TVI   H+   S    
Sbjct: 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL--STIRD 160

Query: 177 FDDIVLLTEGK 187
            D I++L +G+
Sbjct: 161 ADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 80.9 bits (200), Expect = 2e-17
 Identities = 62/196 (31%), Positives = 92/196 (46%), Gaps = 18/196 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG-KPSSNKA---YKFAYVRQEDLFFS 56
           +GP+G+GKTT L +LAG L        +G   V+G       A    +  +V      + 
Sbjct: 37  LGPNGAGKTTTLRMLAGLLEPD-----AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYD 91

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
           +LT RE L   A L     L  +E    +  L  +LG+    D  VG     G S G ++
Sbjct: 92  RLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQ 143

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           ++++A  L+  P V+  DEPTTGLD      + E +RQL   G  ++ S H     V   
Sbjct: 144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI-MQEVERL 202

Query: 177 FDDIVLLTEGKLVYAG 192
            D +V+L  G++VY G
Sbjct: 203 CDRVVVLHRGRVVYEG 218

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 81.5 bits (202), Expect = 3e-17
 Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 25/207 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP----SSNKAY----KFAYVRQED 52
           +G SGSGK+TLL ++ G L         G + ++G+     S  + Y    +   + Q+ 
Sbjct: 40  LGGSGSGKSTLLRLILGLLRPD-----KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQG 94

Query: 53  LFFSQLTVRE--TLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
             FS LTV E     L    +LPE        E V   L KL LV        D     +
Sbjct: 95  ALFSSLTVFENVAFPLREHTKLPE----SLIRELV---LMKLELVGL-RGAAADLYPSEL 146

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIHQP 169
           SGG +KR++LA  +   P +++ DEPT+GLD   A  + E +R+L    G TVI   H  
Sbjct: 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD- 205

Query: 170 RGSVYFKFDDIVLLTEGKLVYAGPARD 196
             S+    D + +L +GK++  G   +
Sbjct: 206 LDSLLTIADRVAVLADGKVIAEGTPEE 232

Length = 263

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 85.2 bits (211), Expect = 3e-17
 Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 18/204 (8%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKFAYVRQEDL--FFSQ 57
           +G SGSGK+TL+N+L      +     SG   V G+  +   A   A +R+E     F +
Sbjct: 40  VGASGSGKSTLMNILGCLDKPT-----SGTYRVAGQDVATLDADALAQLRREHFGFIFQR 94

Query: 58  LTVRETLSLAAELQLPEI---LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
             +   L+ A  +++P +   L  ++R      LL +LGL    +          +SGG+
Sbjct: 95  YHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQ-----LSGGQ 149

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
           ++R+S+A  L+    VI ADEPT  LD+   E+VM  L QL   GHTVI   H P+  V 
Sbjct: 150 QQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VA 207

Query: 175 FKFDDIVLLTEGKLVYAGPARDEP 198
            + + ++ + +G++V   PA+++ 
Sbjct: 208 AQAERVIEIRDGEIVRNPPAQEKV 231

Length = 648

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 79.9 bits (198), Expect = 5e-17
 Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 25/178 (14%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRL--HLSGLLEVNGKPSSNKAYKFAYVRQE------- 51
           +GPSGSGK+TLL  +         L    SG + ++G   ++       +RQ+       
Sbjct: 32  IGPSGSGKSTLLRCIN-------LLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQ 84

Query: 52  -DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
            +LF   LTV E ++LA      + +S  E +E    LL K+GL     ++  DA    +
Sbjct: 85  FNLF-PHLTVLENITLA--PIKVKGMSKAEAEERALELLEKVGL-----ADKADAYPAQL 136

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           SGG+++R+++A  L  +P V+  DEPT+ LD     +V++ ++ LA++G T++   H+
Sbjct: 137 SGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHE 194

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 84.2 bits (209), Expect = 6e-17
 Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 25/201 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYK--FAYVRQEDLFFS 56
           G SGSGK+TLL +L G  +  P+    G + ++G   ++    + +    YV Q+   FS
Sbjct: 506 GRSGSGKSTLLKLLLG--LYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS 560

Query: 57  QLTVRETLSLAA-ELQLPEILSVEER---DEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
             ++RE ++L   E    EI+   +     E++ +L   +G     D+ VG+     +SG
Sbjct: 561 G-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENL--PMGY----DTPVGE-GGANLSG 612

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
           G+++RL+LA  L++ P ++  DE T+ LD      +++ L Q+ Q G TVI   H  R S
Sbjct: 613 GQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAH--RLS 669

Query: 173 VYFKFDDIVLLTEGKLVYAGP 193
                D I++L +GK+V  G 
Sbjct: 670 TIRSADRIIVLDQGKIVEQGS 690

Length = 709

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 79.4 bits (196), Expect = 9e-17
 Identities = 65/200 (32%), Positives = 96/200 (48%), Gaps = 13/200 (6%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +G SG GK+TLLN+++G  +A P    SG + + GK  +        V Q       LTV
Sbjct: 17  IGHSGCGKSTLLNLISG--LAQPT---SGGVILEGKQITEPGPDRMVVFQNYSLLPWLTV 71

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           RE ++LA +  LP+ LS  ER   V   +  +GL   AD   G      +SGG K+R+++
Sbjct: 72  RENIALAVDRVLPD-LSKSERRAIVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAI 125

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH-TVICSIHQPRGSVYFKFDD 179
           A  L   P V+  DEP   LDA     + E L Q+ ++   TV+   H    ++    D 
Sbjct: 126 ARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLS-DR 184

Query: 180 IVLLTEGKLVYAGPARDEPL 199
           +V+LT G     G   + P 
Sbjct: 185 VVMLTNGPAANIGQILEVPF 204

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 79.1 bits (196), Expect = 1e-16
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 19/146 (13%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA-YKFA-----YVRQEDLFF 55
           GP+G+GKTT   ++ G +        SG + ++G+  +    +K A     Y+ QE   F
Sbjct: 33  GPNGAGKTTTFYMIVGLVKPD-----SGKILLDGQDITKLPMHKRARLGIGYLPQEASIF 87

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
            +LTV E +    E++    LS +ER+E +  LL +  +     S     K   +SGGE+
Sbjct: 88  RKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKS-----KASSLSGGER 139

Query: 116 KRLSLACELIASPSVIYADEPTTGLD 141
           +R+ +A  L  +P  +  DEP  G+D
Sbjct: 140 RRVEIARALATNPKFLLLDEPFAGVD 165

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 78.2 bits (193), Expect = 1e-16
 Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 21/176 (11%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF----AYVRQEDLFFSQ 57
           GP+G GKTTLL +LAG L+       SG +  NG   + +  +      Y+        +
Sbjct: 33  GPNGIGKTTLLRILAG-LLRP----DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPE 87

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           L+  E L   A +      ++E+        L  +GL     +   D     +S G+++R
Sbjct: 88  LSALENLHFWAAIHGGAQRTIED-------ALAAVGL-----TGFEDLPAAQLSAGQQRR 135

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
           L+LA   ++   +   DEPTT LD      +   LR     G  V+ + HQ  G V
Sbjct: 136 LALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 79.1 bits (196), Expect = 1e-16
 Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 41/213 (19%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRL--HLSGLLEVNGKPSSNKAYKFAYVRQEDLF---- 54
           +GPSGSGK+TLL  L G       L    SG + V+G+   +K      +R++       
Sbjct: 34  IGPSGSGKSTLLRCLNG-------LEEPDSGSITVDGEDVGDKK-DILKLRRKVGMVFQQ 85

Query: 55  ---FSQLTVRETLSLAAELQLPEI---LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
              F  LTV E ++LA     P     LS  E  E    LL K+GL     ++  DA   
Sbjct: 86  FNLFPHLTVLENVTLA-----PVKVKKLSKAEAREKALELLEKVGL-----ADKADAYPA 135

Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
            +SGG+++R+++A  L   P V+  DEPT+ LD     +V++ ++ LA++G T+I   H+
Sbjct: 136 QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHE 195

Query: 169 PRGSVYFKF-----DDIVLLTEGKLVYAGPARD 196
                   F     D ++ + +GK++  GP  +
Sbjct: 196 ------MGFAREVADRVIFMDQGKIIEEGPPEE 222

Length = 240

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 80.0 bits (197), Expect = 2e-16
 Identities = 60/171 (35%), Positives = 84/171 (49%), Gaps = 17/171 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA----YKFAYVRQEDLFFS 56
           +GP+G+GK+T+  +L G  M SP     G + V G+P  ++A         V Q D    
Sbjct: 36  LGPNGAGKSTIARMLLG--MISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDP 90

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
           + TVRE L +         +S  E +  + SLL    L S AD  V       +SGG K+
Sbjct: 91  EFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRVAL-----LSGGMKR 142

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           RL+LA  LI  P ++  DEPTTGLD      + E LR L   G T++ + H
Sbjct: 143 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 79.9 bits (197), Expect = 3e-16
 Identities = 60/171 (35%), Positives = 86/171 (50%), Gaps = 17/171 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA----YKFAYVRQEDLFFS 56
           +GP+G+GK+T+  ++ G  M SP    +G + V G P   +A     +   V Q D    
Sbjct: 73  LGPNGAGKSTIARMILG--MTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDL 127

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
           + TVRE L +         +S  E +  + SLL    L S AD+ V D     +SGG K+
Sbjct: 128 EFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVSD-----LSGGMKR 179

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           RL+LA  LI  P ++  DEPTTGLD      + E LR L   G T++ + H
Sbjct: 180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230

Length = 340

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 79.1 bits (195), Expect = 4e-16
 Identities = 63/172 (36%), Positives = 86/172 (50%), Gaps = 19/172 (11%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY----KFAYVRQEDLFFS 56
           +GP+G+GKTT L +L G  +  P    +G + + G+P  ++A     +   V Q D    
Sbjct: 39  LGPNGAGKTTTLRMLLG--LTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDP 93

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
             TVRE L +         LS       V  LL    L + AD     AKV  +SGG K+
Sbjct: 94  DFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKAD-----AKVGELSGGMKR 145

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVM-EALRQLAQDGHTVICSIH 167
           RL+LA  L+  P V+  DEPTTGLD  QA  +M E LR L   G T++ + H
Sbjct: 146 RLTLARALVNDPDVLVLDEPTTGLDP-QARHLMWERLRSLLARGKTILLTTH 196

Length = 306

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 78.1 bits (193), Expect = 5e-16
 Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 31/207 (14%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF------AYVRQE--DL 53
           GP+G+GKTTLL++L G+   S     SG + + G+        F        V  E  + 
Sbjct: 64  GPNGAGKTTLLSLLTGEHPPS-----SGDVTLLGRRFGKGETIFELRKRIGLVSSELHER 118

Query: 54  FFSQLTVRET-LS-LAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
           F  + TVR+  LS   A + + +     E       LL  LG    AD   G      +S
Sbjct: 119 FRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS-----LS 173

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA--QDGHTVICSIHQ- 168
            GE++R+ +A  L+  P ++  DEP  GLD    E+++  L +LA       ++   H  
Sbjct: 174 QGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233

Query: 169 ---PRGSVYFKFDDIVLLTEGKLVYAG 192
              P       F   +LL EG++V  G
Sbjct: 234 EEIPPC-----FTHRLLLKEGEVVAQG 255

Length = 257

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 77.9 bits (192), Expect = 5e-16
 Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 13/186 (6%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +GPSG GKTTLLN++AG  +   R    G +++NG+       +   V Q +     L V
Sbjct: 37  LGPSGCGKTTLLNLIAG-FVTPSR----GSIQLNGRRIEGPGAERGVVFQNEALLPWLNV 91

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
            + ++    LQL  I    +R E  + +L  +GL            +  +SGG ++R+ +
Sbjct: 92  IDNVAFG--LQLRGI-EKAQRREIAHQMLALVGL-----EGAEHKYIWQLSGGMRQRVGI 143

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           A  L   P ++  DEP   LDA   E++ E L  L Q+    +  I        F    +
Sbjct: 144 ARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRL 203

Query: 181 VLLTEG 186
           V+L+ G
Sbjct: 204 VVLSPG 209

Length = 259

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 77.1 bits (190), Expect = 5e-16
 Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 19/193 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLT 59
           +GP+G+GK+TLL ++ G L  +     SG +  +G P +    +K   + +    +  LT
Sbjct: 32  LGPNGAGKSTLLKMITGILRPT-----SGEIIFDGHPWTRKDLHKIGSLIESPPLYENLT 86

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
            RE L +   L     L +   D  ++ +L  + L     +N G  K +  S G K+RL 
Sbjct: 87  ARENLKVHTTL-----LGLP--DSRIDEVLNIVDL-----TNTGKKKAKQFSLGMKQRLG 134

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD 179
           +A  L+  P ++  DEPT GLD    +++ E +R   + G TVI S H     V    D 
Sbjct: 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH-ILSEVQQLADH 193

Query: 180 IVLLTEGKLVYAG 192
           I +++EG L Y G
Sbjct: 194 IGIISEGVLGYQG 206

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 77.8 bits (192), Expect = 6e-16
 Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 25/208 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVR-----QEDLF 54
           +GP+G+GK+TLL  L+G+L        SG + +NG P +S    + A  R        L 
Sbjct: 33  LGPNGAGKSTLLKALSGELSPD-----SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLA 87

Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
           F   TV+E + +            E+        L    L   A  +      R +SGGE
Sbjct: 88  FP-FTVQEVVQMGRIPHRSGREPEEDE-RIAAQALAATDLSGLAGRDY-----RTLSGGE 140

Query: 115 KKRLSLA---CEL---IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           ++R+ LA    +L   + S   ++ DEPT+ LD       +   RQLA++G  V+  +H 
Sbjct: 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHD 200

Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD 196
              +  +  D IVLL +G+++ +G  +D
Sbjct: 201 LNLAAQYA-DRIVLLHQGRVIASGSPQD 227

Length = 259

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 76.5 bits (189), Expect = 7e-16
 Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 33/180 (18%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKFAYVR-------QEDL 53
           GPSG+GK+TLL ++ G+   +      G + VNG   S  K  +  ++R       Q+  
Sbjct: 35  GPSGAGKSTLLKLIYGEERPT-----RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR 89

Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERD--EYVNSLLFKLGLVSCADSNVGDAKVRG-- 109
                TV E ++L        ++    R+    V+ +L  +GL           K R   
Sbjct: 90  LLPDRTVYENVALPLR-----VIGKPPREIRRRVSEVLDLVGLKH---------KARALP 135

Query: 110 --ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
             +SGGE++R+++A  ++  P+V+ ADEPT  LD   + ++M    ++ + G TV+ + H
Sbjct: 136 SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH 195

Length = 223

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 78.8 bits (195), Expect = 8e-16
 Identities = 59/235 (25%), Positives = 106/235 (45%), Gaps = 47/235 (20%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQ 57
           +GPSG GK+TLL ++AG    +     SG + ++G+  ++   +    A V Q    +  
Sbjct: 35  LGPSGCGKSTLLRMIAGLEEPT-----SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPH 89

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           +TV E ++   +L+    +   E D+ V  +   LGL      ++ + K   +SGG+++R
Sbjct: 90  MTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGL-----EHLLNRKPLQLSGGQRQR 141

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG--SVY- 174
           ++LA  L+  P V   DEP + LDA         LR L +   + I  +H+  G  ++Y 
Sbjct: 142 VALARALVRKPKVFLLDEPLSNLDA--------KLRVLMR---SEIKKLHERLGTTTIYV 190

Query: 175 --------FKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLAD 221
                      D IV++ +G++   G   +          Y  P ++  A F+  
Sbjct: 191 THDQVEAMTLADRIVVMNDGRIQQVGTPLEL---------YERPANLFVAGFIGS 236

Length = 338

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 11/143 (7%)

Query: 2   GPSGSGKTTLLNVLAGQLMA--SPRLHLSGLLEVNGKPSSNKAYK-FAYVRQEDLFFSQL 58
           GP+G+GKTT   ++ G L+   S ++ L    ++   P   +A     Y+ QE   F +L
Sbjct: 37  GPNGAGKTTTFYMIVG-LVRPDSGKILLDDE-DITKLPMHKRARLGIGYLPQEASIFRKL 94

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
           TV + +    E++  + L   ER E +++LL +  +    DS     K   +SGGE++R+
Sbjct: 95  TVEDNIMAVLEIREKD-LKKAERKEELDALLEEFHITHLRDS-----KAYSLSGGERRRV 148

Query: 119 SLACELIASPSVIYADEPTTGLD 141
            +A  L A+P  I  DEP  G+D
Sbjct: 149 EIARALAANPKFILLDEPFAGVD 171

Length = 243

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 23/136 (16%)

Query: 9   TTLLNVLAGQLMASPRLHLSGLLEVNGKP----SSNKAY--KFAYVRQEDLFFSQLTVRE 62
           +TLL ++ G L  +     SG + ++G+     SS K    +   V Q+   F +LTVRE
Sbjct: 1   STLLKLITGLLQPT-----SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRE 55

Query: 63  TLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLAC 122
            L              +E D      L ++GL       +    V  +SGG+K+R+++A 
Sbjct: 56  NLFFGLRD--------KEADARAEEALERVGL----PDFLDREPVGTLSGGQKQRVAIAR 103

Query: 123 ELIASPSVIYADEPTT 138
            L+  P ++  DEPT 
Sbjct: 104 ALLKKPKLLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 79.5 bits (197), Expect = 2e-15
 Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 26/200 (13%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP--SSNKAY---KFAYVRQEDLFFS 56
           GPSG+GKT+LLN L G L   P     G L++NG      +        ++V Q      
Sbjct: 383 GPSGAGKTSLLNALLGFL---P---YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436

Query: 57  QLTVRETLSL----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
             T+R+ + L    A++ QL + L      E++  L    GL    D+ +GD    G+S 
Sbjct: 437 G-TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLL--PQGL----DTPIGDQAA-GLSV 488

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
           G+ +RL+LA  L+    ++  DEPT  LDA   + VM+AL   ++   T +   HQ    
Sbjct: 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR-RQTTLMVTHQL--E 545

Query: 173 VYFKFDDIVLLTEGKLVYAG 192
              ++D I ++ +G++V  G
Sbjct: 546 DLAQWDQIWVMQDGQIVQQG 565

Length = 588

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 22/198 (11%)

Query: 1   MGPSGSGKTTLLNVLAG-QLMASPRLHLSGL----LEVNGKPSSNKAYKFAYVRQEDLFF 55
           +GPSGSGK+TLLN++AG +   S R+ ++G+         +P S        + QE+  F
Sbjct: 30  VGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVS-------MLFQENNLF 82

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
           + LTV + + L      P +    E  + +   L ++GL     + +       +SGGE+
Sbjct: 83  AHLTVEQNVGLGLS---PGLKLTAEDRQAIEVALARVGL-----AGLEKRLPGELSGGER 134

Query: 116 KRLSLACELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
           +R++LA  L+    V+  DEP   LD A +AE +   L   A+   TV+   HQP  +  
Sbjct: 135 QRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194

Query: 175 FKFDDIVLLTEGKLVYAG 192
                +V L  G++   G
Sbjct: 195 L-AQRVVFLDNGRIAAQG 211

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 74.5 bits (184), Expect = 3e-15
 Identities = 56/175 (32%), Positives = 79/175 (45%), Gaps = 25/175 (14%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS--SNKAYKFAYVRQEDLFFSQLT 59
           GP+GSGKTTLL ++AG L        +G ++++G      + A    Y+   +     LT
Sbjct: 35  GPNGSGKTTLLRLIAGLLPP-----AAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALT 89

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           V E L   A     E L +    E V       GL     + +       +S G+K+R++
Sbjct: 90  VAENLEFWAAFLGGEELDIAAALEAV-------GL-----APLAHLPFGYLSAGQKRRVA 137

Query: 120 LACELIASPSVIYA-DEPTTGLDAFQAEKVMEAL--RQLAQDGHTVICSIHQPRG 171
           LA  L+ S   I+  DEPT  LDA  A  +   L    LAQ G  VI + H P G
Sbjct: 138 LA-RLLVSNRPIWILDEPTAALDA-AAVALFAELIRAHLAQGG-IVIAATHIPLG 189

Length = 207

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 74.5 bits (183), Expect = 3e-15
 Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 26/159 (16%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK-----PSSNKAYKFAYVRQEDLFF 55
           MGPSG GK+TLL+ + G L  + +   +G L +N +     P++ +     +  Q+ L F
Sbjct: 34  MGPSGCGKSTLLSWMIGAL--AGQFSCTGELWLNEQRLDMLPAAQRQIGILF--QDALLF 89

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
             L+V + L  A    LP  L    R    N+ L + GL      +        +SGG++
Sbjct: 90  PHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQDPAT-----LSGGQR 140

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154
            R++L   L+A P  +  DEP + LD         ALR 
Sbjct: 141 ARVALLRALLAQPKALLLDEPFSRLDV--------ALRD 171

Length = 213

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 24/205 (11%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFS---- 56
           +G SGSGK+TL  +LAG    S     SG + ++GKP + K    A+ R   + F     
Sbjct: 39  VGESGSGKSTLARLLAGLEKPS-----SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYS 93

Query: 57  ----QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
               + TV   LS    L+   +   ++R      LL ++GL      +  D +   +SG
Sbjct: 94  SLNPRRTVGRILSEP--LRPHGLSKSQQRIAE---LLDQVGL----PPSFLDRRPHELSG 144

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAF-QAEKVMEALRQLAQDGHTVICSIHQPRG 171
           G+++R+++A  LI  P ++  DEPT+ LD   QA+ ++  L +L ++       I     
Sbjct: 145 GQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQ-ILNLLLELKKERGLTYLFISHDLA 203

Query: 172 SVYFKFDDIVLLTEGKLVYAGPARD 196
            V    D I ++  G++V  GP  +
Sbjct: 204 LVEHMCDRIAVMDNGQIVEIGPTEE 228

Length = 252

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 75.3 bits (186), Expect = 3e-15
 Identities = 61/212 (28%), Positives = 97/212 (45%), Gaps = 29/212 (13%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKFAY---VR--QEDLFF 55
           GP+G+GKTTL N++ G    S     SG +   G+  +    ++ A     R  Q    F
Sbjct: 37  GPNGAGKTTLFNLITGFYKPS-----SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91

Query: 56  SQLTVRETLSLAAELQLPEILSV-------EERD--EYVNSLLFKLGLVSCADSNVGDAK 106
             LTV E +++ A  +L     +       EER+  E    LL  +GL   AD   G+  
Sbjct: 92  PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGN-- 149

Query: 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
              +S G+++RL +A  L   P ++  DEP  GL+  + E++ E +R+L   G   I  I
Sbjct: 150 ---LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLI 206

Query: 167 -HQPRGSVYFKF-DDIVLLTEGKLVYAGPARD 196
            H     +     D IV+L  G+++  G   +
Sbjct: 207 EH--DMKLVMGLADRIVVLNYGEVIAEGTPEE 236

Length = 250

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 74.5 bits (184), Expect = 5e-15
 Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 38/211 (18%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA--------YKFAYVRQED 52
           +G SGSGK+TL   + G  +  P    SG +  +GK     +         +   V Q D
Sbjct: 37  VGESGSGKSTLARAILG--LLKP---TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQ-D 90

Query: 53  LFFS---QLTVRETLSLAAELQLPEILSV-------EERDEYVNSLLFKLGLVSCADSNV 102
              S   ++T+ E        Q+ E L +       E R E V  LL  +GL       V
Sbjct: 91  PMSSLNPRMTIGE--------QIAEPLRIHGKLSKKEARKEAVLLLLVGVGL----PEEV 138

Query: 103 GDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHT 161
            +     +SGG+++R+++A  L  +P ++ ADEPT+ LD     ++++ L++L ++ G T
Sbjct: 139 LNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLT 198

Query: 162 VICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192
           ++   H   G V    D + ++  GK+V  G
Sbjct: 199 LLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 74.3 bits (183), Expect = 5e-15
 Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 22/202 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA---YKFAYVRQEDLFFSQ 57
           +GPSG+GK+TLLN++AG    +P    SG + +NG   +         + + QE+  F+ 
Sbjct: 31  LGPSGAGKSTLLNLIAG--FETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAH 85

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           LTV + + L     L   L+ E+R E V +   ++GL               +SGG+++R
Sbjct: 86  LTVAQNIGLGLSPGLK--LNAEQR-EKVEAAAAQVGLAGF-----LKRLPGELSGGQRQR 137

Query: 118 LSLACELIASPSVIYADEPTTGLD-AFQAEKVMEAL-RQLAQD-GHTVICSIHQPRGSVY 174
           ++LA  L+    ++  DEP + LD A +AE  M AL  QL  +   T++   H P     
Sbjct: 138 VALARCLVREQPILLLDEPFSALDPALRAE--MLALVSQLCDERKMTLLMVTHHPE-DAA 194

Query: 175 FKFDDIVLLTEGKLVYAGPARD 196
              D +V L  G++   G  ++
Sbjct: 195 RIADRVVFLDNGRIAAQGSTQE 216

Length = 231

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 74.3 bits (183), Expect = 5e-15
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG----KPSSNKAYKFAYVRQEDLFFS 56
           +GP+G+GKTT + +L   L  +     SG   V G    +       +   V Q+     
Sbjct: 32  LGPNGAGKTTTIKMLTTLLKPT-----SGRATVAGHDVVREPREVRRRIGIVFQDLSVDD 86

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
           +LT  E L + A L     +   ER E ++ LL  +GL+  AD       V+  SGG ++
Sbjct: 87  ELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADR-----LVKTYSGGMRR 138

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIHQPRGSVYF 175
           RL +A  L+  P V++ DEPT GLD      V E + +L  + G T++ + H      Y 
Sbjct: 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH------YM 192

Query: 176 K-----FDDIVLLTEGKLVYAG 192
           +      D + ++  G+++  G
Sbjct: 193 EEAEQLCDRVAIIDHGRIIAEG 214

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 77.6 bits (192), Expect = 5e-15
 Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 20/204 (9%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE------DLFF 55
           G SGSGK+TL  +LAG L  S     SG +  +G+       +   +R+       D + 
Sbjct: 324 GESGSGKSTLARILAGLLPPS-----SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378

Query: 56  S---QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
           S   ++TV + L+    L++    S  ER   V  LL  +GL         D     +SG
Sbjct: 379 SLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGL----PPEFLDRYPHELSG 432

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
           G+++R+++A  L   P ++  DEP + LD     +V+  L+ L ++       I      
Sbjct: 433 GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV 492

Query: 173 VYFKFDDIVLLTEGKLVYAGPARD 196
           V +  D + ++ +G++V  GP   
Sbjct: 493 VRYIADRVAVMYDGRIVEEGPTEK 516

Length = 539

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 75.1 bits (185), Expect = 5e-15
 Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 42/214 (19%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLE-------VNGKPSSNKAYKFAYVRQ--- 50
           +GP+G+GK+TL             LH +G+L+       + G+P          VR+   
Sbjct: 34  LGPNGAGKSTLF------------LHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81

Query: 51  ------EDLFFSQLTVRETLSLAA-ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVG 103
                 +D  F+  TV E ++     L L +    EE ++ V   L  +G+         
Sbjct: 82  IVFQNPDDQLFAP-TVEEDVAFGPLNLGLSK----EEVEKRVKEALKAVGM-----EGFE 131

Query: 104 DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           +     +SGG+KKR+++A  L   P +I  DEPT+GLD   A ++M+ L  L ++G T+I
Sbjct: 132 NKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITII 191

Query: 164 CSIHQ-PRGSVYFKFDDIVLLTEGKLVYAGPARD 196
            S H      VY   D + ++++GK++  G  ++
Sbjct: 192 ISTHDVDLVPVY--ADKVYVMSDGKIIKEGTPKE 223

Length = 275

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 75.9 bits (187), Expect = 6e-15
 Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 42/219 (19%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK-PSSNKAYKFAYVRQEDLFFSQ-- 57
           +G +G+GK+T L +L G L+ +     SG + VNGK P   +     Y+R   L   Q  
Sbjct: 56  LGANGAGKSTTLKMLTGLLLPT-----SGKVRVNGKDPFRRREE---YLRSIGLVMGQKL 107

Query: 58  -----LTVRETLSLAAEL-QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
                L   ++L +   + ++P+    E  D     L  +  L            VR +S
Sbjct: 108 QLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFL---------KWPVRKLS 158

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPR 170
            G++ R  LA  L+  P V++ DEPT GLD      + E L++  ++   TV+ + H   
Sbjct: 159 LGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI-- 216

Query: 171 GSVYFKFDDI-------VLLTEGKLVYAGPARDEPLAYF 202
                 FDDI       +L+ +G+LV+ G        + 
Sbjct: 217 ------FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249

Length = 325

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 76.4 bits (188), Expect = 7e-15
 Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 17/201 (8%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK-----FAYVRQEDLFFS 56
           GP+G+GKTTLL  + G L  +P    +G + V G      + +      A V Q+     
Sbjct: 36  GPNGAGKTTLLRAINGTL--TPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSF 90

Query: 57  QLTVRETLSLAAELQLPEILSVEERDE-YVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
           +  VR+ + +          +  E D   V   + + G+   AD  V       +SGGE+
Sbjct: 91  EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTS-----LSGGER 145

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
           +R+ LA  L  +  V+  DEPT  LD     + +E +R+L  DG T + +IH    +  +
Sbjct: 146 QRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARY 205

Query: 176 KFDDIVLLTEGKLVYAGPARD 196
             D++VLL +G++  AGP  D
Sbjct: 206 -CDELVLLADGRVRAAGPPAD 225

Length = 402

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 73.6 bits (182), Expect = 7e-15
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 1   MGPSGSGKTTLLNVLAGQL-MASPRLHLSGLLEVNGKPSSNKAYK-FAYVRQEDLFFSQL 58
           +G +G+GKTTLL  + G L   S  +   G  ++ G P   +A     YV +    F +L
Sbjct: 32  LGRNGAGKTTLLKTIMGLLPPRSGSIRFDGR-DITGLPPHERARAGIGYVPEGRRIFPEL 90

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
           TV E L L A  +       + R E V  L  +L                 +SGGE++ L
Sbjct: 91  TVEENLLLGAYARRRA--KRKARLERVYELFPRLK-------ERRKQLAGTLSGGEQQML 141

Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           ++A  L++ P ++  DEP+ GL     E++ EA+R+L  +G T++
Sbjct: 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTIL 186

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 73.8 bits (182), Expect = 8e-15
 Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 25/200 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKPSSNKAY-----KFAYVRQEDLF 54
           GPSGSGK+TL+N++       PR +   SG + ++G    +        +   V Q+   
Sbjct: 35  GPSGSGKSTLVNLI-------PRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFL 87

Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI--SG 112
           F+  TV E ++        E   VEE     N+  F + L    D+ +G+   RG+  SG
Sbjct: 88  FND-TVAENIAYGRPGATRE--EVEEAARAANAHEFIMELPEGYDTVIGE---RGVKLSG 141

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
           G+++R+++A  L+  P ++  DE T+ LD      V  AL +L ++  T     H  R S
Sbjct: 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKN-RTTFVIAH--RLS 198

Query: 173 VYFKFDDIVLLTEGKLVYAG 192
                D IV+L +GK+V  G
Sbjct: 199 TIENADRIVVLEDGKIVERG 218

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 34/208 (16%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQ--- 57
           +GP+G+GK+TL ++L   L  +      G + V G     +    A + +  + F Q   
Sbjct: 33  LGPNGAGKSTLFSLLTR-LYVAQ----EGQISVAG--HDLRRAPRAALARLGVVFQQPTL 85

Query: 58  ---LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
              L+VR+ L   A L     LS  E    +  LL +LGL     +   D KVR ++GG 
Sbjct: 86  DLDLSVRQNLRYHAALHG---LSRAEARARIAELLARLGL-----AERADDKVRELNGGH 137

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIH-----Q 168
           ++R+ +A  L+  P+++  DEPT GLD      +   +R LA+D G +V+ + H     +
Sbjct: 138 RRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIE 197

Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD 196
                    D +V+L  G+++  G A +
Sbjct: 198 AD-------DRLVVLHRGRVLADGAAAE 218

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 74.0 bits (183), Expect = 1e-14
 Identities = 66/212 (31%), Positives = 97/212 (45%), Gaps = 36/212 (16%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVR-----QEDLFF 55
           GP+G+GK+TLL  L+G+L        SG + +NG+P +     + A  R        L F
Sbjct: 35  GPNGAGKSTLLRALSGELSPD-----SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSF 89

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
              TV E +++      P  LS  E D  V + L ++ L   A  +        +SGGE+
Sbjct: 90  P-FTVEEVVAMGR---APHGLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQ 140

Query: 116 KRLSLA---CELIA---SPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICSIHQ 168
           +R+ LA    +L      P  +  DEPT+ LD      V+   RQLA + G  VI  +H 
Sbjct: 141 QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHD 200

Query: 169 ----PRGSVYFKFDDIVLLTEGKLVYAGPARD 196
                R +     D IVLL +G+LV  G   +
Sbjct: 201 LNLAARYA-----DRIVLLHQGRLVADGTPAE 227

Length = 258

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 25/177 (14%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS--SNKAY-----KFAYVRQ--E 51
           +G +G+GK+TLL  L G L        SG + ++G+P   S K       +   V Q  +
Sbjct: 24  LGANGAGKSTLLLHLNGLLRPQ-----SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPD 78

Query: 52  DLFFSQLTVRETLSLAA-ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
           D  F+   V + ++     L L E     E +  V   L  +G      S + +     +
Sbjct: 79  DQLFAA-DVDQDVAFGPLNLGLSE----AEVERRVREALTAVGA-----SGLRERPTHCL 128

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           SGGEKKR+++A  +   P V+  DEPT GLD    E+++  LR+L  +G TV+ S H
Sbjct: 129 SGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTH 185

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 76.5 bits (189), Expect = 1e-14
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 32/162 (19%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           G +G+GK+TLL +LAG+L               G+ +  K  +  Y+ QE     + TV 
Sbjct: 36  GRNGAGKSTLLKILAGELEPDS-----------GEVTRPKGLRVGYLSQEPPLDPEKTVL 84

Query: 62  ETL--------SLAAELQLPEILSVEERDEYVNSLLFKLGL---------VSCADSNVG- 103
           + +         L AEL+    L  +  DE +  L   L              A   +G 
Sbjct: 85  DYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGF 144

Query: 104 ---DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDA 142
              D  V  +SGG ++R++LA  L+  P ++  DEPT  LD 
Sbjct: 145 PDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186

Length = 530

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 68/235 (28%), Positives = 104/235 (44%), Gaps = 39/235 (16%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP---SSNKAY--KFAYVRQEDLFF 55
           +GP+G GK+TLL   A  L   P+   SG + +  KP    S++    + A + Q  L  
Sbjct: 34  IGPNGCGKSTLLKCFARLLT--PQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTP 88

Query: 56  SQLTVRETLSLAAE--LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
             +TVRE ++      L L   LS E+    VN  + +  +   AD  + D     +SGG
Sbjct: 89  EGITVRELVAYGRSPWLSLWGRLSAEDN-ARVNQAMEQTRINHLADRRLTD-----LSGG 142

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGHTVICSIHQ-PRG 171
           +++R  LA  L     V+  DEPTT LD   Q E +M  +R+L   G TV+  +H   + 
Sbjct: 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVE-LMRLMRELNTQGKTVVTVLHDLNQA 201

Query: 172 SVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVD 226
           S Y   D +V+L  G ++  G                 P+ V     L  +  V+
Sbjct: 202 SRY--CDHLVVLANGHVMAQG----------------TPEEVMTPGLLRTVFDVE 238

Length = 255

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 22/169 (13%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFF----- 55
           G SGSGK+TLL++L G    +     SG +  NG+  S   + + A +R + L F     
Sbjct: 38  GSSGSGKSTLLHLLGGLDNPT-----SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFH 92

Query: 56  ---SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
                 T  E +++     L    SV+E  E    +L K+GL      +  + +   +SG
Sbjct: 93  HLLPDFTALENVAMPL---LIGKKSVKEAKERAYEMLEKVGL-----EHRINHRPSELSG 144

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHT 161
           GE++R+++A  L+  PS++ ADEPT  LD   A+ + + + +L ++ +T
Sbjct: 145 GERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT 193

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 76.1 bits (188), Expect = 2e-14
 Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 21/208 (10%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP---------SSNKAYKFAYVRQE- 51
           G SGSGK+TL   L G L+       SG + ++G+             +  + A + Q+ 
Sbjct: 42  GESGSGKSTLALALMG-LLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP 100

Query: 52  -DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
                  +T+ + +  A  L+L    S  E  +    LL ++GL    D    D     +
Sbjct: 101 MTSLNPVMTIGDQIREA--LRLHGKGSRAEARKRAVELLEQVGL---PDPERRDRYPHQL 155

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQP 169
           SGG ++R+ +A  L   P ++ ADEPTT LD     ++++ L+ L ++ G  V+   H  
Sbjct: 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL 215

Query: 170 RGSVYFKF-DDIVLLTEGKLVYAGPARD 196
              V  +  D +V++ +G++V  GP  +
Sbjct: 216 --GVVAELADRVVVMYKGEIVETGPTEE 241

Length = 539

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 39/232 (16%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKF----AYVRQEDLFFS 56
           GPSGSGKTT L ++   +  +     SG + ++G+  S+    +      YV Q+   F 
Sbjct: 34  GPSGSGKTTTLKMINRLIEPT-----SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFP 88

Query: 57  QLTVRETLSLAAELQLPEILSV--EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
            LTV E ++      +P++L    E   +  + LL  +GL     S   D     +SGG+
Sbjct: 89  HLTVAENIAT-----VPKLLGWDKERIKKRADELLDLVGLDP---SEYADRYPHELSGGQ 140

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSV 173
           ++R+ +A  L A P ++  DEP   LD    +++ E +++L ++ G T++   H    ++
Sbjct: 141 QQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEAL 200

Query: 174 YFKFDDIVLLTEGKLV-YAGPARDEPLAYFSRFGYTCPDHVNPA-EFLADLI 223
               D I ++  G++V Y  P  DE LA             NPA +F+ D  
Sbjct: 201 KLA-DRIAVMDAGEIVQYDTP--DEILA-------------NPANDFVEDFF 236

Length = 309

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 53/207 (25%), Positives = 101/207 (48%), Gaps = 30/207 (14%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQ 57
           +GP+GSGK+ LL  +AG +   P    SG + +NGK  +N   +    +YV Q    F  
Sbjct: 31  LGPTGSGKSVLLETIAGFI--KPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPH 85

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           +TV + ++   + +  +   +E +   V  +   LG+      ++ + K   +SGGE++R
Sbjct: 86  MTVYKNIAYGLKKRKVDKKEIERK---VLEIAEMLGI-----DHLLNRKPETLSGGEQQR 137

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           +++A  L+ +P ++  DEP + LD    EK+ E L+++ ++    +  +H     V   F
Sbjct: 138 VAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV--LH-----VTHDF 190

Query: 178 DDIVLLTE-------GKLVYAGPARDE 197
           ++   L +       GKL+  G   + 
Sbjct: 191 EEAWALADKVAIMLNGKLIQVGKPEEV 217

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 51/193 (26%), Positives = 97/193 (50%), Gaps = 19/193 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK---PSSNKAYKF-AYVRQEDLFFS 56
           +GP+G+GK+T + ++ G L        SG ++V G+    +  +  +   Y+ + +  + 
Sbjct: 34  LGPNGAGKSTTMKIITGYLPPD-----SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYL 88

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
            + VRE L   A +   +   +++R   V  ++  +GL       +G      +S G ++
Sbjct: 89  DMYVREYLQFIAGIYGMKGQLLKQR---VEEMIELVGLRPEQHKKIGQ-----LSKGYRQ 140

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           R+ LA  LI  P V+  DEPTTGLD  Q  ++   ++ + +D  T+I S H  +  V   
Sbjct: 141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD-KTIILSTHIMQ-EVEAI 198

Query: 177 FDDIVLLTEGKLV 189
            D ++++ +GK+V
Sbjct: 199 CDRVIIINKGKIV 211

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 72.1 bits (177), Expect = 4e-14
 Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 42/216 (19%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVN------GKPSSNKAYKFAYVRQEDLF 54
           +GPSGSGKTTLL  +   L+  P    +G + V        +  S +      +RQ   F
Sbjct: 35  IGPSGSGKTTLLRCI--NLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGF 89

Query: 55  -------FSQLTVRETLSLAAELQLPEILSVEERDEYV---NSLLFKLGLVSCADSNVGD 104
                  F   TV E +     ++ P I+  E ++E       LL K+GL     +    
Sbjct: 90  VFQNFNLFPHRTVLENI-----IEGPVIVKGEPKEEATARARELLAKVGL-----AGKET 139

Query: 105 AKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVIC 164
           +  R +SGG+++R+++A  L   P VI  DEPT+ LD     +V+  +RQLAQ+  T++ 
Sbjct: 140 SYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVI 199

Query: 165 SIHQPRGSVYFKF-----DDIVLLTEGKLVYAGPAR 195
             H+        F     D  + + +G++V  GPA+
Sbjct: 200 VTHE------MSFARDVADRAIFMDQGRIVEQGPAK 229

Length = 250

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 72.0 bits (176), Expect = 6e-14
 Identities = 62/207 (29%), Positives = 107/207 (51%), Gaps = 22/207 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMA--SPRLHLSGL---LEVNGKPSSNKAYKFA---YVRQED 52
           +GPSGSGK+TLL  L+G +    S   H+  L   ++  G+ + +     A   Y+ Q+ 
Sbjct: 36  LGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95

Query: 53  LFFSQLTVRETLSLAAELQLP------EILSVEERDEYVNSLLFKLGLVSCADSNVGDAK 106
              ++L+V E + + A    P         + E++   + +L  ++G+V  A       +
Sbjct: 96  NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALT-RVGMVHFAHQ-----R 149

Query: 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DGHTVICS 165
           V  +SGG+++R+++A  L+    VI ADEP   LD   A  VM+ LR + Q DG TV+ +
Sbjct: 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVT 209

Query: 166 IHQPRGSVYFKFDDIVLLTEGKLVYAG 192
           +HQ   ++ +  + IV L +G + Y G
Sbjct: 210 LHQVDYALRY-CERIVALRQGHVFYDG 235

Length = 262

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 15/187 (8%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +GPSG GKTTLLN++AG +         G + ++GKP      +   V Q +       V
Sbjct: 33  LGPSGCGKTTLLNLIAGFVPYQ-----HGSITLDGKPVEGPGAERGVVFQNEGLLPWRNV 87

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           ++ ++    LQL  +    +R E  + +L K+GL            +  +SGG+++R+ +
Sbjct: 88  QDNVAFG--LQLAGV-EKMQRLEIAHQMLKKVGL-----EGAEKRYIWQLSGGQRQRVGI 139

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDD 179
           A  L A+P ++  DEP   LDAF  E++   L +L Q+ G  V+   H    +V F   +
Sbjct: 140 ARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAV-FMATE 198

Query: 180 IVLLTEG 186
           +VLL+ G
Sbjct: 199 LVLLSPG 205

Length = 255

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 50/201 (24%), Positives = 97/201 (48%), Gaps = 23/201 (11%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-KFAYVRQEDLFFSQLT 59
           +GP+G+GKTT   ++ G L  +      G +  NG P S +   +  Y+ +E   + ++T
Sbjct: 34  LGPNGAGKTTTFRMILGLLEPT-----EGEITWNGGPLSQEIKNRIGYLPEERGLYPKMT 88

Query: 60  VRETLSLAAELQ-LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDA---KVRGISGGEK 115
           V + L   AEL+ +P+    ++   ++  L             +      K++ +S G +
Sbjct: 89  VEDQLKYLAELKGMPKAEIQKKLQAWLERL------------EIVGKKTKKIKELSKGNQ 136

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
           +++     +I  P ++  DEP +GLD    E + +A+ +L ++G T+I S H+    V  
Sbjct: 137 QKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEE 195

Query: 176 KFDDIVLLTEGKLVYAGPARD 196
             D +++L +G+ V  G   D
Sbjct: 196 LCDRLLMLKKGQTVLYGTVED 216

Length = 300

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 71.4 bits (175), Expect = 7e-14
 Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE--DLF---- 54
           MGPSG GK+TLL      L  +    + G + + G+   +       VR+E   +F    
Sbjct: 36  MGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95

Query: 55  -FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
            F  LT+ + +++  +L    + S +E DE V   L K  L       + D     +SGG
Sbjct: 96  PFPHLTIYDNVAIGVKLN-GLVKSKKELDERVEWALKKAALWDEVKDRLND-YPSNLSGG 153

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP---- 169
           +++RL +A  L   P ++  DEPT  +D     K+ E L +L ++ +T++   H P    
Sbjct: 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSPAQAA 212

Query: 170 RGSVYFKFDDIVLLTEGKLVYAGPAR 195
           R S Y  F     L  GKL+  GP R
Sbjct: 213 RVSDYVAF-----LYLGKLIEVGPTR 233

Length = 253

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 74.0 bits (182), Expect = 8e-14
 Identities = 57/200 (28%), Positives = 102/200 (51%), Gaps = 25/200 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-----KFAYVRQEDLFFS 56
           GPSGSGK+TL+ +L      +     SG + ++G    + +      +   V Q+ L FS
Sbjct: 362 GPSGSGKSTLIKLLLRLYDPT-----SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS 416

Query: 57  QLTVRETLSL----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
             T+RE ++L    A + ++ E L +    E++ +L          D+ VG+  V  +SG
Sbjct: 417 G-TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGY------DTIVGERGVN-LSG 468

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
           G+++RL++A  L+ +P ++  DE T+ LD      + +AL++L + G T +   H+   S
Sbjct: 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRL--S 525

Query: 173 VYFKFDDIVLLTEGKLVYAG 192
                D I++L  G++V  G
Sbjct: 526 TIKNADRIIVLDNGRIVERG 545

Length = 567

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 29/200 (14%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG------KPSSNKAYKFAYVRQE-DL 53
           +G  GSGK+TLL +LAG    +     SG + ++G       P+  +     YV Q+  L
Sbjct: 36  IGRVGSGKSTLLKLLAGLYKPT-----SGSVLLDGTDIRQLDPADLRR-NIGYVPQDVTL 89

Query: 54  FFSQLTVRETLSLAA-ELQLPEILSVEER---DEYVNSLLFKLGLVSCADSNVGDAKVRG 109
           F+   T+R+ ++L A       IL   E     ++VN      GL    D  +G+ + RG
Sbjct: 90  FYG--TLRDNITLGAPLADDERILRAAELAGVTDFVNKH--PNGL----DLQIGE-RGRG 140

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           +SGG+++ ++LA  L+  P ++  DEPT+ +D    E++ E LRQL  D  T+I   H+P
Sbjct: 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRP 199

Query: 170 RGSVYFKFDDIVLLTEGKLV 189
             S+    D I+++  G++V
Sbjct: 200 --SLLDLVDRIIVMDSGRIV 217

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 69.8 bits (171), Expect = 2e-13
 Identities = 58/192 (30%), Positives = 105/192 (54%), Gaps = 17/192 (8%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-----AYVRQEDLFFS 56
           GPSGSGK+T++ +L  +    P+    G + ++GKP S   +K+     + V QE + F+
Sbjct: 47  GPSGSGKSTVVALL--ENFYQPQ---GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA 101

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
           + ++++ ++    LQ      V+E  +  ++  F   L S  D+ VG+   + +SGG+K+
Sbjct: 102 R-SLQDNIAYG--LQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQ-LSGGQKQ 157

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           R+++A  LI +P V+  DE T+ LDA   ++V +AL    +   TV+   H  R S   +
Sbjct: 158 RVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPER-RTVLVIAH--RLSTVER 214

Query: 177 FDDIVLLTEGKL 188
            D I++L  G++
Sbjct: 215 ADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 60/180 (33%), Positives = 86/180 (47%), Gaps = 29/180 (16%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQ---- 57
           GPSGSGK+TLL  LAG L   P     G + ++G P S  +     VR+     +Q    
Sbjct: 368 GPSGSGKSTLLATLAGLL--DPL---QGEVTLDGVPVS--SLDQDEVRRRVSVCAQDAHL 420

Query: 58  --LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVG--DAKVRG---- 109
              TVRE L LA           +  DE + + L ++GL     +     D  +      
Sbjct: 421 FDTTVRENLRLARP---------DATDEELWAALERVGLADWLRALPDGLDTVLGEGGAR 471

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           +SGGE++RL+LA  L+A   ++  DEPT  LDA  A++++E L   A  G TV+   H  
Sbjct: 472 LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSGRTVVLITHHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 18/204 (8%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAY--KFAYVRQEDLFFS 56
           GP+G+GKTTL+N+L             G + ++G    +   K+       V Q+   FS
Sbjct: 36  GPTGAGKTTLINLLMRFYDPQ-----KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFS 90

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
             T+ E + L       E   V E  +   +  F + L +  D+ +G+     +S GE++
Sbjct: 91  G-TIMENIRLGRPNATDE--EVIEAAKEAGAHDFIMKLPNGYDTVLGENG-GNLSQGERQ 146

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
            L++A  ++  P ++  DE T+ +D    + + EAL +L   G T I   H  R S    
Sbjct: 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAH--RLSTIKN 203

Query: 177 FDDIVLLTEGKLVYAGPARDEPLA 200
            D I++L +GK++  G   DE LA
Sbjct: 204 ADKILVLDDGKIIEEGT-HDELLA 226

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 68.7 bits (168), Expect = 3e-13
 Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 2   GPSGSGKTTLLNVLAG-QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           GP+GSGKTTLL +LAG     + R+ L+G      + S  +     Y+       + L+V
Sbjct: 33  GPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG--LLYLGHAPGIKTTLSV 90

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
            E L                 DE V   L ++GL     +   D  V  +S G+++R++L
Sbjct: 91  LENLRFWHADH---------SDEQVEEALARVGL-----NGFEDRPVAQLSAGQQRRVAL 136

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171
           A  L++   +   DEPTT LD     +  EA+      G  V+ + HQ  G
Sbjct: 137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG 187

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 26/205 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK-----PSSNKAYKFAYVRQEDLFFS 56
           GP+G+GK+TLL+ +  +L+       SG + ++G      PS   A K + ++QE+   S
Sbjct: 34  GPNGAGKSTLLS-MMSRLLKKD----SGEITIDGLELTSTPSKELAKKLSILKQENHINS 88

Query: 57  QLTVRETLSLAAELQLPEI---LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
           +LTVR+ +      + P     L+ E+R   +N  +  L L      ++ D  +  +SGG
Sbjct: 89  RLTVRDLVGFG---RFPYSQGRLTKEDR-RIINEAIEYLHL-----EDLSDRYLDELSGG 139

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPR-G 171
           +++R  +A  L      +  DEP   LD   + ++M+ LR+LA + G T++  +H     
Sbjct: 140 QRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFA 199

Query: 172 SVYFKFDDIVLLTEGKLVYAGPARD 196
           S Y   D IV L  GK+V  G   +
Sbjct: 200 SCY--SDHIVALKNGKVVKQGSPDE 222

Length = 252

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 68.7 bits (169), Expect = 5e-13
 Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 21/202 (10%)

Query: 2   GPSGSGKTTLLNVLAGQLMA-SPRLHLSGLLEVNGKPSSNKAYK-FAYVRQEDLFFSQLT 59
           G +G+GKTTLL  + G +   S R+   G  ++ G P   +A    AYV +    F +LT
Sbjct: 36  GRNGAGKTTLLKTIMGLVRPRSGRIIFDGE-DITGLPPHERARLGIAYVPEGRRIFPRLT 94

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           V E L L A     +  + E   E V  L F   L    +   G      +SGGE++ L+
Sbjct: 95  VEENLLLGAYA-RRDKEAQERDLEEVYEL-FPR-LKERRNQRAGT-----LSGGEQQMLA 146

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF-- 177
           +A  L++ P ++  DEP+ GL     E++ EA+++L ++G   I  + Q       +F  
Sbjct: 147 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQ-----NARFAL 201

Query: 178 ---DDIVLLTEGKLVYAGPARD 196
              D   +L  G++V +G A +
Sbjct: 202 EIADRGYVLENGRIVLSGTAAE 223

Length = 237

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 68.3 bits (167), Expect = 6e-13
 Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 15/171 (8%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQ--L 58
           +GP+G+GKTTLL  + G +  +      G ++V G           YV Q   F     +
Sbjct: 12  LGPNGAGKTTLLRAILGLIPPA-----KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPI 66

Query: 59  TVRETLSLAAELQLPEILSVEERDEY--VNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
           +V  T+ ++        L      ++  V   L ++GL   AD  VG+     +SGG+++
Sbjct: 67  SVAHTV-MSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE-----LSGGQRQ 120

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           R+ +A  L   PSV+  DEP TGLD    E + E   +LA  G  ++ + H
Sbjct: 121 RVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 69.1 bits (169), Expect = 7e-13
 Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 27/207 (13%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQ---------E 51
           +G +G+GK+TL   L G L  S     SG +  +GKP          +R+         +
Sbjct: 38  LGGNGAGKSTLFQNLNGILKPS-----SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPD 92

Query: 52  DLFFSQLTVRETLSLAA-ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
           +  FS  +V + +S  A  L+LPE    +E  + V++ L + G+      ++ D     +
Sbjct: 93  NQLFSA-SVYQDVSFGAVNLKLPE----DEVRKRVDNALKRTGI-----EHLKDKPTHCL 142

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQP 169
           S G+KKR+++A  L+  P V+  DEPT GLD     ++M+ L ++ ++ G T+I + H  
Sbjct: 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD- 201

Query: 170 RGSVYFKFDDIVLLTEGKLVYAGPARD 196
              V    D++ ++ EG+++  G  ++
Sbjct: 202 IDIVPLYCDNVFVMKEGRVILQGNPKE 228

Length = 283

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 34/183 (18%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFF------ 55
           GP+G+GKTTLL +LAG L+       +G +   G+P  N    +     + L +      
Sbjct: 35  GPNGAGKTTLLRILAG-LLRP----DAGEVYWQGEPIQNVRESYH----QALLYLGHQPG 85

Query: 56  --SQLTVRETLS-LAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
             ++LT  E L             ++ E    V       GL       + D  V  +S 
Sbjct: 86  IKTELTALENLHFWQRFHGSGNAATIWEALAQV-------GLA-----GLEDLPVGQLSA 133

Query: 113 GEKKRLSLACELIASPSVIYA-DEPTTGLDAFQAEKVMEAL-RQLAQDGHTVICSIHQPR 170
           G+++R++LA  L  SP+ ++  DEP T LD  +   ++ AL    A  G  V+ + HQP 
Sbjct: 134 GQQRRVALA-RLWLSPAPLWILDEPFTALDK-EGVALLTALMAAHAAQGGIVLLTTHQPL 191

Query: 171 GSV 173
              
Sbjct: 192 PIA 194

Length = 209

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 17/171 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQ 57
           +GPSG GKTTLL ++AG    +     +G +   G+  +    +   +  V Q    F  
Sbjct: 36  LGPSGCGKTTLLRIIAGLERQT-----AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPN 90

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           LTV + ++   +      +   E  E V  LL  +GL               +SGG+++R
Sbjct: 91  LTVADNIAYGLK---NRGMGRAEVAERVAELLDLVGL-----PGSERKYPGQLSGGQQQR 142

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIH 167
           ++LA  L  SP ++  DEP + LDA   E +   +RQL +  G T I   H
Sbjct: 143 VALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTH 193

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 68.2 bits (166), Expect = 1e-12
 Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 19/227 (8%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQ--- 57
           MGP+GSGKTT L  L            SG + + G+   N      + R+  + F +   
Sbjct: 53  MGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112

Query: 58  --LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
             +++ +  ++ A ++  +++  +E      + L ++GL       + D+  R +SGG++
Sbjct: 113 FPMSIMD--NVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR-LSGGQQ 169

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
           + L LA  L  +P V+  DEPT+ LD    EK+ E +R LA D  TVI   H    +   
Sbjct: 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-DRLTVIIVTHNLAQAARI 228

Query: 176 KFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADL 222
             D   L  +G+LV  GP   E L       ++ P H   A ++A L
Sbjct: 229 S-DRAALFFDGRLVEEGPT--EQL-------FSSPKHAETARYVAGL 265

Length = 276

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 54/199 (27%), Positives = 101/199 (50%), Gaps = 24/199 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA-YK--FAYVRQEDLFFSQ 57
           MGPSG+GK+TLLN++AG +  +     SG ++VN +  +  A Y+   + + QE+  F+ 
Sbjct: 30  MGPSGAGKSTLLNLIAGFIEPA-----SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAH 84

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           LTVR+ + L      P +    E+ E V     ++G+     ++  D     +SGG+++R
Sbjct: 85  LTVRQNIGLGLH---PGLKLNAEQQEKVVDAAQQVGI-----ADYLDRLPEQLSGGQRQR 136

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH-TVICSIHQP---RGSV 173
           ++LA  L+    ++  DEP + LD    E+++  ++QL  +   T++   H     R   
Sbjct: 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIA 196

Query: 174 YFKFDDIVLLTEGKLVYAG 192
                 I ++++GK+    
Sbjct: 197 ----SQIAVVSQGKIKVVS 211

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 58/212 (27%), Positives = 107/212 (50%), Gaps = 18/212 (8%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK--PSSNKAY---KFAYVRQEDLFF 55
           +G SGSGK+TL  ++    +       +G + V+G     ++ A+   +   V QE++ F
Sbjct: 34  VGRSGSGKSTLTKLIQRFYVPE-----NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF 88

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
           ++ ++R+ ++LA       +  V E  +   +  F   L    D+ VG+    G+SGG++
Sbjct: 89  NR-SIRDNIALADPG--MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGA-GLSGGQR 144

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
           +R+++A  LI +P ++  DE T+ LD +++E  +         G TVI   H  R S   
Sbjct: 145 QRIAIARALIHNPRILIFDEATSALD-YESEHAIMRNMHDICAGRTVIIIAH--RLSTVK 201

Query: 176 KFDDIVLLTEGKLVYAGPARDEPLAYFSRFGY 207
             D I+++ +G++V  G + DE LA    + Y
Sbjct: 202 NADRIIVMEKGRIVEQG-SHDELLAENGLYAY 232

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 18/200 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYK--FAYVRQEDLFFSQ 57
           +GPSG GKTTLL ++AG    +     SG + ++GK  +N   +K     V Q    F  
Sbjct: 32  LGPSGCGKTTLLRLIAGFETPT-----SGEILLDGKDITNLPPHKRPVNTVFQNYALFPH 86

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           LTV E ++    L+    L   E  E V   L  + L         + K   +SGG+++R
Sbjct: 87  LTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQL-----EGYANRKPSQLSGGQQQR 138

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFK 176
           +++A  L+  P V+  DEP   LD    + +   L++L ++ G T +   H    ++   
Sbjct: 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMS 198

Query: 177 FDDIVLLTEGKLVYAGPARD 196
            D I ++ +GK+   G   +
Sbjct: 199 -DRIAVMNKGKIQQIGTPEE 217

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 66.7 bits (163), Expect = 2e-12
 Identities = 61/200 (30%), Positives = 90/200 (45%), Gaps = 29/200 (14%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQED 52
           GPSGSGK+TLL VLAG    S     SG + + G+P            +A    +V Q  
Sbjct: 43  GPSGSGKSTLLAVLAGLDDPS-----SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97

Query: 53  LFFSQLTVRETLSLAAELQLPEILSVEERDEYVNS--LLFKLGLVSCADSNVGDAKVRGI 110
                LT  E ++L  EL+          D    +  LL  +GL               +
Sbjct: 98  HLIPNLTALENVALPLELR-----GESSADSRAGAKALLEAVGL-----GKRLTHYPAQL 147

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQP 169
           SGGE++R++LA      P V++ADEPT  LD    +K+ + L  L ++ G T++   H P
Sbjct: 148 SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP 207

Query: 170 RGSVYFKFDDIVLLTEGKLV 189
              +  + D  + L  G+LV
Sbjct: 208 --QLAARCDRQLRLRSGRLV 225

Length = 228

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 15/200 (7%)

Query: 2   GPSGSGKTTLLNVLAG-QLMASPRLHLSG--LLEVNGKPSSNKAYKFAYVRQEDLFFSQL 58
           G SG+GK+TL+  + G +   S  + + G  L  ++GK       +   + Q     S  
Sbjct: 38  GRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
           TV E ++L  E+     +   E +E V  LL  +GL      +  DA    +SGG+K+R+
Sbjct: 98  TVFENVALPLEI---AGVPKAEIEERVLELLELVGL-----EDKADAYPAQLSGGQKQRV 149

Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKF 177
            +A  L  +P V+  DE T+ LD    + ++  LR + ++ G T++   H+    V  + 
Sbjct: 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM--EVVKRI 207

Query: 178 -DDIVLLTEGKLVYAGPARD 196
            D + ++ +G++V  G   +
Sbjct: 208 CDRVAVMEKGEVVEEGTVEE 227

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 28/204 (13%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP--SSNKAY-------KFAYVRQED 52
           GPSGSGKT+L+N++AG           G +E+NG+    + K         +  YV Q+ 
Sbjct: 31  GPSGSGKTSLINMIAGLTRPD-----EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA 85

Query: 53  LFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
             F   TVR  L              +      + L+  LG+      ++ D     +SG
Sbjct: 86  RLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGI-----EHLLDRYPGTLSG 131

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
           GEK+R+++   L+ +P ++  DEP   LD  +  +++  L +L  + +  I  +      
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE 191

Query: 173 VYFKFDDIVLLTEGKLVYAGPARD 196
           V    D +V+L  GK+  +GP  +
Sbjct: 192 VLRLADRVVVLENGKVKASGPLEE 215

Length = 352

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 16/201 (7%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK---FAYVRQEDLFFSQ 57
           +GPSGSGKTTLL ++AG  +  P    SG +   G+ +++   +     +V Q    F  
Sbjct: 34  LGPSGSGKTTLLRLIAG--LERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRH 88

Query: 58  LTVRETLSLAAELQ-LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
           +TV + ++    ++   E     E    V+ LL  + L       + D     +SGG+++
Sbjct: 89  MTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQL-----DWLADRYPAQLSGGQRQ 143

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYF 175
           R++LA  L   P V+  DEP   LDA   +++   LR+L  +   T +   H    ++  
Sbjct: 144 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEV 203

Query: 176 KFDDIVLLTEGKLVYAGPARD 196
             D +V++ +G++   G   +
Sbjct: 204 A-DRVVVMNKGRIEQVGTPDE 223

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 68.0 bits (167), Expect = 2e-12
 Identities = 59/238 (24%), Positives = 101/238 (42%), Gaps = 23/238 (9%)

Query: 1   MGPSGSGKTTLLNVLAG-QLMASPRLHLSG--LLEVNGKPSSNKAYKFAYVRQEDLFFSQ 57
           +G SG+GK+TLL ++   +   S  + + G  L  ++         K   + Q     S 
Sbjct: 38  IGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSS 97

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
            TV E ++   EL     +   E  + V  LL  +GL   AD          +SGG+K+R
Sbjct: 98  RTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYPAQ-----LSGGQKQR 149

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI-HQPRGSVYFK 176
           +++A  L  +P ++  DE T+ LD    + ++E L+ + ++    I  I H+    V  +
Sbjct: 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME--VVKR 207

Query: 177 F-DDIVLLTEGKLVYAGPARD------EPLAYFSRFGYTCPDHVNPAEFLADLISVDY 227
             D + +L +G+LV  G   +        +     F     +   P E L  L S D 
Sbjct: 208 ICDRVAVLDQGRLVEEGTVSEVFANPKHAIT--QEFIGETLEIDLPEELLERLESGDG 263

Length = 339

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 66.2 bits (161), Expect = 4e-12
 Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 16/214 (7%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-----KFAYVRQEDLFF 55
           +G SG GK+T L       M      + GL+E+ GK   N+           V Q+   F
Sbjct: 34  IGASGCGKSTFLRCF--NRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
            + ++ E +S A +L    I + +E +  V   L K+GL       +    +  +SGG++
Sbjct: 92  VK-SIYENISYAPKLH-GMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNAL-ALSGGQQ 148

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG---- 171
           +RL +A  L   P ++  DEPT+ LD   +  + E L++L+ +   ++ + +  +G    
Sbjct: 149 QRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVA 208

Query: 172 --SVYFKFDDIVLLTEGKLVYAGPARDEPLAYFS 203
             + +F   +++   E K  +  P +++  AY S
Sbjct: 209 DYTAFFHLGELIEFGESKEFFENPKQEKTKAYLS 242

Length = 246

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 57/199 (28%), Positives = 89/199 (44%), Gaps = 14/199 (7%)

Query: 2   GPSGSGKTTLLNVLAGQLMASP-RLHLSG-LLEVNGKPSSNKAYK--FAYVRQEDLFFSQ 57
           G SGSGKTTL+ ++AG        + L+G  L  + K       K    YV QE   F  
Sbjct: 30  GRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPH 89

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           L+VR  L    +   P    +    E V  LL   G+        G      +SGGEK+R
Sbjct: 90  LSVRGNLRYGMKRARPSERRI--SFERVIELL---GIGHLLGRLPGR-----LSGGEKQR 139

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           +++   L++SP ++  DEP   LD  +  +++  L +L  +    I  +      V    
Sbjct: 140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199

Query: 178 DDIVLLTEGKLVYAGPARD 196
           D +V+L +G++  AGP  +
Sbjct: 200 DRVVVLEDGRVAAAGPIAE 218

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 68.3 bits (168), Expect = 5e-12
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 18/169 (10%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP----SSNKAYK--FAYVRQEDLFF 55
           G +G+GK+TL+ +L G          SG + V+GK     S   A +     V Q  +  
Sbjct: 37  GENGAGKSTLMKILFGLYQPD-----SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLV 91

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVG-DAKVRGISGGE 114
             LTV E + L  E     ++   +    +  L  + GL       V  DAKV  +S GE
Sbjct: 92  PTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGL------PVDPDAKVADLSVGE 145

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           ++R+ +   L     ++  DEPT  L   +A+++ E LR+LA +G T+I
Sbjct: 146 QQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTII 194

Length = 501

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 68.3 bits (168), Expect = 5e-12
 Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 30/202 (14%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQL--- 58
           G +G GK+TLL +L             G + +NG+P +   Y  A +RQ     SQ    
Sbjct: 373 GRTGCGKSTLLQLLTRAWDPQ-----QGEILLNGQPIA--DYSEAALRQAISVVSQRVHL 425

Query: 59  ---TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVG-DAKV----RGI 110
              T+R+ L LAA             DE +  +L ++GL    + + G +A +    R +
Sbjct: 426 FSATLRDNLLLAAP---------NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQL 476

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
           SGGE++RL +A  L+    ++  DEPT GLDA    +++E L + AQ+  TV+   H+  
Sbjct: 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQN-KTVLMITHRLT 535

Query: 171 GSVYFKFDDIVLLTEGKLVYAG 192
           G    +FD I ++  G+++  G
Sbjct: 536 GLE--QFDRICVMDNGQIIEQG 555

Length = 574

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 63.9 bits (156), Expect = 7e-12
 Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 55/196 (28%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN----KAYKFAYVRQEDLFFS 56
           +G SGSGK+TLL +L G L         G + ++G P S+     +   + + Q    F 
Sbjct: 34  LGRSGSGKSTLLQLLTGDLKPQ-----QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD 88

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
             T+R                                       N+G    R  SGGE++
Sbjct: 89  T-TLRN--------------------------------------NLG----RRFSGGERQ 105

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           RL+LA  L+    ++  DEPT GLD     +++  + ++ +D  T+I   H   G  +  
Sbjct: 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWITHHLTGIEH-- 162

Query: 177 FDDIVLLTEGKLVYAG 192
            D I+ L  GK++  G
Sbjct: 163 MDKILFLENGKIIMQG 178

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 68.0 bits (167), Expect = 7e-12
 Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 30/210 (14%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG------KPSSNKAYKFAYVRQE-DLF 54
           G  GSGK+TLL +L G    +      G + ++G       P+  +     YV Q+  LF
Sbjct: 498 GRIGSGKSTLLKLLLGLYQPT-----EGSVLLDGVDIRQIDPADLRR-NIGYVPQDPRLF 551

Query: 55  FSQLTVRETLSL-AAELQLPEILSVEER---DEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
           +   T+R+ ++L A      EIL   E     E+V       GL    D  +G+ + R +
Sbjct: 552 YG--TLRDNIALGAPYADDEEILRAAELAGVTEFVRRH--PDGL----DMQIGE-RGRSL 602

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
           SGG+++ ++LA  L+  P ++  DEPT+ +D    E+  + L++    G T++   H  R
Sbjct: 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTH--R 659

Query: 171 GSVYFKFDDIVLLTEGKLVYAGPARDEPLA 200
            S+    D I+++  G++V  GP +D+ L 
Sbjct: 660 TSLLDLVDRIIVMDNGRIVADGP-KDQVLE 688

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 65.3 bits (160), Expect = 8e-12
 Identities = 58/218 (26%), Positives = 93/218 (42%), Gaps = 20/218 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHL-SGLLEVNGK-----PSSNKAYKFAYVR-QEDL 53
           MGP+GSGK+TL   + G     P+  +  G +  +G+         +A    ++  Q  +
Sbjct: 36  MGPNGSGKSTLAYTIMGH----PKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPV 91

Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL-VSCADSNVGDAKVRGISG 112
               +T  + L  A   +      + E  + +      LGL     +  V +    G SG
Sbjct: 92  EIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFSG 147

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
           GEKKR  +   L+  P +   DEP +GLD    + V E +  L ++G  V+   H  R  
Sbjct: 148 GEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLL 207

Query: 173 VYFKFDDIVLLTEGKLVYAGPARDEPLA-YFSRFGYTC 209
            Y K D + +L +G++V +G   D  LA      GY  
Sbjct: 208 DYIKPDKVHVLYDGRIVKSG---DPELAEELEEKGYDW 242

Length = 251

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 63.4 bits (155), Expect = 9e-12
 Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 58/192 (30%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-----SSNKAYKFAYVRQEDLFFS 56
           GPSGSGK+TL  ++ G L  +     SG + ++G        +       Y+ Q+D  FS
Sbjct: 35  GPSGSGKSTLARLILGLLRPT-----SGRVRLDGADISQWDPNELGDHVGYLPQDDELFS 89

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
             ++ E            ILS                                  GG+++
Sbjct: 90  G-SIAEN-----------ILS----------------------------------GGQRQ 103

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           RL LA  L  +P ++  DEP + LD      + +A+  L   G T I   H+P       
Sbjct: 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP--ETLAS 161

Query: 177 FDDIVLLTEGKL 188
            D I++L +G++
Sbjct: 162 ADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 19/206 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYV---RQEDLFFS- 56
           MGPSGSGK+TLL V    +   P   +SG + ++G+      +K   +   R+  + F  
Sbjct: 35  MGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ----DIFKMDVIELRRRVQMVFQI 90

Query: 57  -----QLTVRETLSLAAELQLPEIL-SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
                 L++ E ++L   L+L  ++ S +E  E V   L K  L       + DA    +
Sbjct: 91  PNPIPNLSIFENVALG--LKLNRLVKSKKELQERVRWALEKAQLWDEVKDRL-DAPAGKL 147

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
           SGG+++RL +A  L   P V+ ADEPT  LD     K+     +L +D  T++   H P+
Sbjct: 148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPQ 206

Query: 171 GSVYFKFDDIVLLTEGKLVYAGPARD 196
            +     D +  L +G++V  GP R+
Sbjct: 207 QAARIS-DYVAFLYKGQIVEWGPTRE 231

Length = 250

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 63/240 (26%), Positives = 108/240 (45%), Gaps = 49/240 (20%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRL--HLSGLLEVNGKPSSNKAY-------KFAYVRQED 52
           GPSGSGKTT + ++        RL    SG + ++G+    +         K  YV Q+ 
Sbjct: 34  GPSGSGKTTTMKMIN-------RLIEPTSGEIFIDGED--IREQDPVELRRKIGYVIQQI 84

Query: 53  LFFSQLTVRETLSLAAELQLPEIL--SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
             F  +TV E ++L     +P++L    E+  E  + LL    LV    +   D     +
Sbjct: 85  GLFPHMTVEENIAL-----VPKLLKWPKEKIRERADELL---ALVGLDPAEFADRYPHEL 136

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQP 169
           SGG+++R+ +A  L A P ++  DEP   LD    +++ E  ++L Q+ G T++   H  
Sbjct: 137 SGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI 196

Query: 170 RGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHV--NPA-EFLADLISVD 226
             +     D I ++  G++V  G                 PD +  +PA +F+A+ +  D
Sbjct: 197 DEAFRLA-DRIAIMKNGEIVQVG----------------TPDEILRSPANDFVAEFVGAD 239

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 21/202 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK---FAYVRQE---DLF 54
           +G +GSGK+TL   L G +  +     SG + + G+P+  +A +    AYV Q    D  
Sbjct: 39  VGVNGSGKSTLFKALMGFVRLA-----SGKISILGQPT-RQALQKNLVAYVPQSEEVDWS 92

Query: 55  FSQLTVRETLSLAAELQLPEILSVEERD-EYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
           F  L V + + +     +  +   ++RD + V + L ++ +V      +G+     +SGG
Sbjct: 93  FPVL-VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGE-----LSGG 146

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
           +KKR+ LA  +     VI  DEP TG+D     +++  LR+L  +G T++ S H   GSV
Sbjct: 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN-LGSV 205

Query: 174 YFKFDDIVLLTEGKLVYAGPAR 195
             +F D  ++ +G ++ +GP  
Sbjct: 206 T-EFCDYTVMVKGTVLASGPTE 226

Length = 272

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 22/203 (10%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYK--FAYVRQEDLFFS 56
           GPSG GK+TLL ++A   + SP    SG L   G+  S    +AY+   +Y  Q    F 
Sbjct: 36  GPSGCGKSTLLKIVA--SLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90

Query: 57  QLTVRETLSLAAELQLPEILSVEERD-EYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
                   ++   L  P  +     D      LL +  L      ++    +  +SGGEK
Sbjct: 91  D-------TVEDNLIFPWQIRNRRPDRAAALDLLARFAL----PDSILTKNITELSGGEK 139

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
           +R++L   L   P ++  DE T+ LD      + E + +  ++ +  +  I   +     
Sbjct: 140 QRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIR 199

Query: 176 KFDDIVLLTEGKLVYAGPARDEP 198
             D ++ L  G       AR E 
Sbjct: 200 HADKVITLQPGHAGEMQEARQEL 222

Length = 223

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 64.5 bits (158), Expect = 3e-11
 Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 34/216 (15%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP----SSNKAYKF-----AYVRQED 52
           G SGSGK+ L   + G L       + G +  +GK     S  +  K      A + Q+ 
Sbjct: 38  GESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97

Query: 53  LFFSQL----TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
           +  + L    T+ + ++    L   + LS +E  E    LL  +G+         D + R
Sbjct: 98  M--TSLNPVMTIGDQIAEVLRLHG-KGLSKKEAKERAIELLELVGI--------PDPERR 146

Query: 109 G------ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHT 161
                  +SGG ++R+ +A  L  +P ++ ADEPTT LD     ++++ L++L ++ G  
Sbjct: 147 LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTA 206

Query: 162 VICSIHQPRGSVYFKF-DDIVLLTEGKLVYAGPARD 196
           +I   H     V  +  D + ++  G++V  GP  +
Sbjct: 207 LILITHDL--GVVAEIADRVAVMYAGRIVEEGPVEE 240

Length = 316

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 65.3 bits (160), Expect = 4e-11
 Identities = 49/158 (31%), Positives = 71/158 (44%), Gaps = 32/158 (20%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFFSQLT 59
           +GP+G+GK+TLL +LAG+L       LSG ++V          K  Y  Q  D      T
Sbjct: 354 VGPNGAGKSTLLKLLAGELGP-----LSGTVKV----GETV--KIGYFDQHRDELDPDKT 402

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           V E LS             +  ++ V + L + G          +  V  +SGGEK RL 
Sbjct: 403 VLEELSEGFP---------DGDEQEVRAYLGRFGF----TGEDQEKPVGVLSGGEKARLL 449

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157
           LA  L+  P+++  DEPT  LD       +E+L  L +
Sbjct: 450 LAKLLLQPPNLLLLDEPTNHLD-------IESLEALEE 480

Length = 530

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 37/206 (17%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAY--KFAYVRQEDLFFS 56
           G SG GK+T++++L  +    P    SG + ++G    +   +    +   V QE + F 
Sbjct: 36  GSSGCGKSTVVSLL--ERFYDP---TSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD 90

Query: 57  QLTVRETLSLAAELQLPEILSVEER-------DEYVNSLLFKLGLVSCADSNVGDAKVRG 109
             T+ E +               E         +++ SL          D+ VG+   RG
Sbjct: 91  G-TIAENIRYGKP---DATDEEVEEAAKKANIHDFIMSLPDGY------DTLVGE---RG 137

Query: 110 --ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK-VMEALRQLAQDGHTVICSI 166
             +SGG+K+R+++A  L+ +P ++  DE T+ LDA ++EK V EAL +  + G T I   
Sbjct: 138 SQLSGGQKQRIAIARALLRNPKILLLDEATSALDA-ESEKLVQEALDRAMK-GRTTIVIA 195

Query: 167 HQPRGSVYFKFDDIVLLTEGKLVYAG 192
           H  R S     D I +L  G++V  G
Sbjct: 196 H--RLSTIRNADLIAVLQNGQVVEQG 219

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 16/198 (8%)

Query: 1   MGPSGSGKTTLLNVLAGQLM--ASPRLHLSGLLEVNGKP---SSNKAYKFAYVRQEDLFF 55
           MG SGSGK+T + +L  +L+   + ++ + G   +   P      +  K   V Q+   F
Sbjct: 25  MGLSGSGKSTTVRML-NRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83

Query: 56  SQLTVRETLSLAAELQ-LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
             +T+ +  SL  EL   PE    +ER E    LL  +GL         +     +SGG 
Sbjct: 84  PHMTILQNTSLGPELLGWPE----QERKEKALELLKLVGLEEYEHRYPDE-----LSGGM 134

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
           ++R+ LA  L A P ++  DE  + LD    + + + L++L       I  I        
Sbjct: 135 QQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAI 194

Query: 175 FKFDDIVLLTEGKLVYAG 192
              D IV++  G++V  G
Sbjct: 195 RIGDRIVIMKAGEIVQVG 212

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 26/210 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG-----KPSSNKAYKFAYVRQEDL-- 53
           +G +G+GK+TLLN +AG L  +     SG + ++G     K  + +A   A V Q+ L  
Sbjct: 38  IGSNGAGKSTLLNAIAGDLKPT-----SGQILIDGVDVTKKSVAKRANLLARVFQDPLAG 92

Query: 54  FFSQLTVRETLSLAA----ELQLPEILSVEERDEYVNSL-LFKLGLVSCADSNVGDAKVR 108
              +LT+ E L+LA     +  L   L+   R  +   L    LGL      N    ++ 
Sbjct: 93  TAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGL-----ENRLSDRIG 147

Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIH 167
            +SGG+++ LSL    +  P ++  DE T  LD   AE VME   ++  +   T +   H
Sbjct: 148 LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH 207

Query: 168 QPRGSVYFKFDDIVLLTEGKLV--YAGPAR 195
               ++ +  + +++L  GK+V    G  +
Sbjct: 208 NMEDALDYG-NRLIMLHSGKIVLDVTGEEK 236

Length = 263

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 63.1 bits (153), Expect = 5e-11
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 15/204 (7%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFFSQ-- 57
           +GPSG GK+T L  L         + ++G ++  G+           +R+E  + F Q  
Sbjct: 36  IGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95

Query: 58  ---LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
               +V +  ++A  L++  +   E  D+ V   L +  +      N+ D   +  SGG+
Sbjct: 96  PFPFSVYD--NVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNL-DRNAQAFSGGQ 152

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH--QPRGS 172
           ++R+ +A  L   P V+  DEPT+ LD   + ++ E L +L    +T I   H  Q  G 
Sbjct: 153 QQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ-YTFIMVTHNLQQAGR 211

Query: 173 VYFKFDDIVLLTEGKLVYAGPARD 196
           +    D    L  G L+ AGP  +
Sbjct: 212 IS---DQTAFLMNGDLIEAGPTEE 232

Length = 251

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 64.1 bits (156), Expect = 5e-11
 Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 20/212 (9%)

Query: 1   MGPSGSGKTTLLNVLAG-QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +GPSG GKTTLL +LAG +   S  + L G  +V   P   +     +  Q    F  +T
Sbjct: 2   LGPSGCGKTTLLRLLAGFEQPDSGSIMLDG-EDVTNVPPHLRHINMVF--QSYALFPHMT 58

Query: 60  VRETLSLAAELQ-LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
           V E ++   +++ +P      E    V      L LV   +    D K   +SGG+++R+
Sbjct: 59  VEENVAFGLKMRKVPR----AEIKPRVLEA---LRLVQLEE--FADRKPHQLSGGQQQRV 109

Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICSIHQPRGSVYFKF 177
           +LA  L+  P ++  DEP + LD    +++   L+ +  Q G T +   H    ++    
Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS- 168

Query: 178 DDIVLLTEGKLVYAGPAR---DEPLAYFS-RF 205
           D I ++ +GK+   G      +EP   F  RF
Sbjct: 169 DRIAIMRKGKIAQIGTPEEIYEEPANLFVARF 200

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 65.1 bits (159), Expect = 5e-11
 Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 37/210 (17%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------KAYKFAYVRQEDLFF 55
           G SGSGK+TL  +L G   A      SG + +NG    +      + +   Y+ QE   F
Sbjct: 507 GMSGSGKSTLAKLLVGFFQAR-----SGEILLNGFSLKDIDRHTLRQF-INYLPQEPYIF 560

Query: 56  SQLTVRETLSLAAE--LQLPEILSV----EERDEYVNSLLFKLGL---VSCADSNVGDAK 106
           S  ++ E L L A+  +   EI +     E +D+  N     LG    +S   S+     
Sbjct: 561 SG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIEN---MPLGYQTELSEEGSS----- 611

Query: 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
              ISGG+K+R++LA  L+    V+  DE T+ LD    +K++  L  L     T+I   
Sbjct: 612 ---ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK--TIIFVA 666

Query: 167 HQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196
           H  R SV  + D I++L  GK++  G   +
Sbjct: 667 H--RLSVAKQSDKIIVLDHGKIIEQGSHDE 694

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 62.4 bits (152), Expect = 8e-11
 Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 15/171 (8%)

Query: 1   MGPSGSGKTTLLNVLAGQLM-ASPRLHLSGLLEVNGKPSSNKAY-----KFAYVRQEDLF 54
           +GP+G+GKTTL++V+ G+       +   G  ++   P    A      KF    Q+   
Sbjct: 37  IGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKF----QKPTV 92

Query: 55  FSQLTVRETLSLA--AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
           F  LTVRE L LA   +  +   L    R E    +   L  +   D    D     +S 
Sbjct: 93  FENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER--DRLAALLSH 150

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           G+K+ L +   L   P ++  DEP  G+   + EK  E L+ LA   H+++
Sbjct: 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSIL 200

Length = 249

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 61.5 bits (150), Expect = 9e-11
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 13/169 (7%)

Query: 1   MGPSGSGKTTLLNVLAG-QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +GPSG GKTT L ++AG +   S R+++ G   V   P  ++    A V Q    +  +T
Sbjct: 32  LGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRD-VTDLPPKDR--DIAMVFQNYALYPHMT 88

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           V + ++   +L+    +  +E DE V  +   L +      ++ D K + +SGG+++R++
Sbjct: 89  VYDNIAFGLKLR---KVPKDEIDERVREVAELLQI-----EHLLDRKPKQLSGGQRQRVA 140

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIH 167
           L   ++  P V   DEP + LDA    ++   L++L Q  G T I   H
Sbjct: 141 LGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTH 189

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 61.3 bits (150), Expect = 9e-11
 Identities = 57/203 (28%), Positives = 86/203 (42%), Gaps = 53/203 (26%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           GP GSGK++LL+ L G+L       LSG + V G          AYV QE    +  T+R
Sbjct: 38  GPVGSGKSSLLSALLGEL-----EKLSGSVSVPGS--------IAYVSQEPWIQN-GTIR 83

Query: 62  ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCA------------DSNVGDAKVRG 109
           E +              EER E V        + +CA             + +G+   +G
Sbjct: 84  ENILFGKPFD-------EERYEKV--------IKACALEPDLEILPDGDLTEIGE---KG 125

Query: 110 I--SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME-ALRQLAQDGHTVICSI 166
           I  SGG+K+R+SLA  + +   +   D+P + +DA     + E  +  L  +  T I   
Sbjct: 126 INLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVT 185

Query: 167 HQPRGSVYF--KFDDIVLLTEGK 187
           HQ    +      D IV+L  G+
Sbjct: 186 HQ----LQLLPHADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 63.5 bits (154), Expect = 1e-10
 Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 23/203 (11%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYK--FAYVRQEDLFFSQ 57
           +G SG GKTTLL  +AG + A+    L+G + +  +  ++   +K   A + Q    F  
Sbjct: 37  IGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPH 93

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR---GISGGE 114
           L V + ++     Q      + ER   V   L  +GL        GDA       +SGG 
Sbjct: 94  LKVEDNVAFGLRAQKMPKADIAER---VADALKLVGL--------GDAAAHLPAQLSGGM 142

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD--GHTVICSIHQPRGS 172
           ++R+++A  +   P V+  DEP + LDA     + E +  L ++    T++C  H  +  
Sbjct: 143 QQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHD-QDD 201

Query: 173 VYFKFDDIVLLTEGKLVYAGPAR 195
                D   ++ +G+L   G  +
Sbjct: 202 ALTLADKAGIMKDGRLAAHGEPQ 224

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 64.0 bits (156), Expect = 1e-10
 Identities = 59/216 (27%), Positives = 106/216 (49%), Gaps = 28/216 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG------KPSSNKAYKFAYVRQEDLFF 55
           GPSGSGK+TL  +L  Q + +P+    G + V+G       P+  +  +   V QE++ F
Sbjct: 490 GPSGSGKSTLTKLL--QRLYTPQH---GQVLVDGVDLAIADPAWLRR-QMGVVLQENVLF 543

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLL----FKLGLVSCADSNVGDAKVRGIS 111
           S+ ++R+ ++L      P      E   +   L     F   L    ++ VG+     +S
Sbjct: 544 SR-SIRDNIALC-NPGAPF-----EHVIHAAKLAGAHDFISELPQGYNTEVGEKGA-NLS 595

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171
           GG+++R+++A  L+ +P ++  DE T+ LD      +M  +R++ + G TVI   H  R 
Sbjct: 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-GRTVIIIAH--RL 652

Query: 172 SVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGY 207
           S     D I++L +G++  +G   +E LA    +  
Sbjct: 653 STVRACDRIIVLEKGQIAESG-RHEELLALQGLYAR 687

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 18/176 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK-----PSSNKAYK-FAYVRQEDLF 54
           +GP+G+GKTT   ++ G +   PR   +G + ++ +     P   +A +   Y+ QE   
Sbjct: 35  LGPNGAGKTTTFYMVVGIV---PRD--AGNIIIDDEDISLLPLHARARRGIGYLPQEASI 89

Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
           F +L+V +  +L A LQ+ + LS E+R++  N L+ +  +    D ++G +    +SGGE
Sbjct: 90  FRRLSVYD--NLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD-SMGQS----LSGGE 142

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
           ++R+ +A  L A+P  I  DEP  G+D      +   +  L   G  V+ + H  R
Sbjct: 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR 198

Length = 241

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 17/177 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKFAYVRQEDL--FFSQ 57
           +G SGSGK+TLL +LAG    S     SG + + G+P         A +R + +   F  
Sbjct: 42  IGESGSGKSTLLAILAGLDDGS-----SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQS 96

Query: 58  LTVRETLSLAAELQLPEILSVE-ERDEYVNS--LLFKLGLVSCADSNVGDAKVRGISGGE 114
             +  TL+    ++LP +L  E  R     +  LL +LGL    D          +SGGE
Sbjct: 97  FMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQ-----LSGGE 151

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPR 170
           ++R++LA      P V++ADEPT  LD    +K+ + L  L ++ G T+I   H  +
Sbjct: 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ 208

Length = 228

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 62.7 bits (153), Expect = 3e-10
 Identities = 59/185 (31%), Positives = 87/185 (47%), Gaps = 37/185 (20%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDL--FFSQL 58
           +GP+G GK+T L +LAG+L  +       L      PS ++  K    R  +L  +F +L
Sbjct: 106 LGPNGIGKSTALKILAGELKPN-------LGRYEDPPSWDEVIK--RFRGTELQNYFKKL 156

Query: 59  TVRETLSLAAELQ----LP--------EIL-SVEER---DEYVNSLLFKLGLVSCADSNV 102
                L    + Q    +P        E+L  V+ER   DE V     +LGL      NV
Sbjct: 157 -YEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVE----RLGL-----ENV 206

Query: 103 GDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTV 162
            D  V  +SGGE +R+++A  L+    V + DEP++ LD  Q       +R+LA+DG  V
Sbjct: 207 LDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYV 266

Query: 163 ICSIH 167
           I   H
Sbjct: 267 IVVEH 271

Length = 591

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 60.6 bits (147), Expect = 5e-10
 Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 24/177 (13%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK-------FAYVRQEDL 53
           +GP+G+GK+TL     G L  +     SG + + G+P + +  +         +   +D 
Sbjct: 36  IGPNGAGKSTLFRHFNGILKPT-----SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQ 90

Query: 54  FFSQLTVRETLSLA-AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
            FS  TV + ++     L L E  +V  R   V+S L  LGL       + D     +SG
Sbjct: 91  IFSP-TVEQDIAFGPINLGLDE-ETVAHR---VSSALHMLGL-----EELRDRVPHHLSG 140

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQ 168
           GEKKR+++A  +   P V+  DEPT GLD    +++++ L  L +  G TVI S HQ
Sbjct: 141 GEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197

Length = 277

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 22/203 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +GP+G+GK+TLL  +AG    S  +  +G   +    ++  A   AY+ Q+      + V
Sbjct: 31  VGPNGAGKSTLLARMAGMTSGSGSIQFAG-QPLEAWSATELARHRAYLSQQQTPPFAMPV 89

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
              L+L    +         R E +N +   L L    D  +G +    +SGGE +R+ L
Sbjct: 90  WHYLTLHQPDK--------TRTELLNDVAGALAL----DDKLGRS-TNQLSGGEWQRVRL 136

Query: 121 ACELI-----ASPS--VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
           A  ++     A+P+  ++  DEP   LD  Q   +   L  L Q G  ++ S H    ++
Sbjct: 137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTL 196

Query: 174 YFKFDDIVLLTEGKLVYAGPARD 196
                   LL  GKL+ +G   +
Sbjct: 197 R-HAHRAWLLKRGKLLASGRREE 218

Length = 248

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 57.5 bits (140), Expect = 5e-10
 Identities = 37/153 (24%), Positives = 53/153 (34%), Gaps = 70/153 (45%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           G +G+GK+TLL ++AG+L               G  +     K  Y       F QL   
Sbjct: 33  GRNGAGKSTLLKLIAGEL-----------EPDEGIVTWGSTVKIGY-------FEQL--- 71

Query: 62  ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA 121
                                                            SGGEK RL+LA
Sbjct: 72  -------------------------------------------------SGGEKMRLALA 82

Query: 122 CELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154
             L+ +P+++  DEPT  LD    E + EAL++
Sbjct: 83  KLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 61.7 bits (150), Expect = 6e-10
 Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPR--LHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQL- 58
           G SGSGK+TL+N++       PR     SG + ++G   ++  Y  A +R++    SQ  
Sbjct: 365 GRSGSGKSTLVNLI-------PRFYEPDSGQILLDGHDLAD--YTLASLRRQVALVSQDV 415

Query: 59  -----TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
                T+   ++     Q      +E       +  F   L    D+ +G+  V  +SGG
Sbjct: 416 VLFNDTIANNIAYGRTEQADRA-EIERALAAAYAQDFVDKLPLGLDTPIGENGVL-LSGG 473

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
           +++RL++A  L+    ++  DE T+ LD      V  AL +L Q G T +   H  R S 
Sbjct: 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAH--RLST 530

Query: 174 YFKFDDIVLLTEGKLVYAGPARD 196
             K D IV++ +G++V  G   +
Sbjct: 531 IEKADRIVVMDDGRIVERGTHNE 553

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 28/159 (17%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK-----PSSNKAYKFAYVRQEDLFF 55
           +GPSG+GK+TLLN++AG L  +     SG L +NG+     P S +     +  QE+  F
Sbjct: 31  LGPSGAGKSTLLNLIAGFLTPA-----SGSLTLNGQDHTTTPPSRRPVSMLF--QENNLF 83

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
           S LTV + + L     L   L+  +R++ ++++  ++G+        G      +SGG++
Sbjct: 84  SHLTVAQNIGLGLNPGLK--LNAAQREK-LHAIARQMGIEDLLARLPGQ-----LSGGQR 135

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154
           +R++LA  L+    ++  DEP + LD         ALRQ
Sbjct: 136 QRVALARCLVREQPILLLDEPFSALDP--------ALRQ 166

Length = 232

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 59.1 bits (143), Expect = 8e-10
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 23/179 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG------KPSSNKA-----YKFAYVR 49
           +GPSG+GK++LL VL   L+  PR   SG L + G      K  S+KA          V 
Sbjct: 34  LGPSGAGKSSLLRVL--NLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVF 88

Query: 50  QEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRG 109
           Q+   +  LTV+E L  A    L   LS ++       LL +L L   AD          
Sbjct: 89  QQYNLWPHLTVQENLIEAPCRVLG--LSKDQALARAEKLLKRLRLKPYAD-----RYPLH 141

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           +SGG+++R+++A  L+  P V+  DEPT  LD     +++  +++LA+ G T +   H+
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200

Length = 242

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 59.2 bits (144), Expect = 9e-10
 Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 10/173 (5%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQ-- 57
           +GPSG GK+TLL  L       P + + G +  +G+     K       R+  + F +  
Sbjct: 33  IGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92

Query: 58  ---LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
              +++ + ++    L    I   +E DE V   L K  L       + D+ + G+SGG+
Sbjct: 93  PFPMSIYDNIAYGPRLH--GIKDKKELDEIVEESLKKAALWDEVKDRLHDSAL-GLSGGQ 149

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           ++RL +A  L   P V+  DEPT+ LD     K+ E +++L +  +T++   H
Sbjct: 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTH 201

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 59.2 bits (143), Expect = 9e-10
 Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 22/222 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFFSQ-- 57
           +GPSG GK+T L  L         + + G + ++GK   +K      +R+   + F +  
Sbjct: 36  IGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95

Query: 58  ---LTVRETLSLAAELQLPEILSVEER---DEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
              +++ + ++       P I  ++++   D+ V   L K  L      ++  + +  +S
Sbjct: 96  PFPMSIYDNVAYG-----PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSAL-KLS 149

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171
           GG+++RL +A  +   P VI  DEPT+ LD     K+ + + +L ++   VI + +  + 
Sbjct: 150 GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQA 209

Query: 172 S------VYFKFDDIVLLTEGKLVYAGPARDEPLAYFS-RFG 206
           S       +F   D++   + + ++  P + E   Y S RFG
Sbjct: 210 SRVSDYTAFFLMGDLIEFNKTEKIFLEPQKKETEDYISGRFG 251

Length = 251

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 37/207 (17%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKPSSNKAYKFAYVR-------QED 52
           GPSGSGK+T+L +L        R +   SG + ++G+           +R       Q+ 
Sbjct: 34  GPSGSGKSTILRLLF-------RFYDVSSGSILIDGQDIRE--VTLDSLRRAIGVVPQDT 84

Query: 53  LFFSQLTVRETLSL----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
           + F+  T+   +      A + ++ E     +  + +             D+ VG+   R
Sbjct: 85  VLFND-TIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGY------DTIVGE---R 134

Query: 109 G--ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
           G  +SGGEK+R+++A  ++ +P ++  DE T+ LD     ++  ALR +++ G T I   
Sbjct: 135 GLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIA 193

Query: 167 HQPRGSVYFKFDDIVLLTEGKLVYAGP 193
           H  R S     D I++L +G++V  G 
Sbjct: 194 H--RLSTIVNADKIIVLKDGRIVERGT 218

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 55/223 (24%), Positives = 90/223 (40%), Gaps = 45/223 (20%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYK-----FAYVRQEDLF 54
           +G +G GKTTLL  L G L        SG + ++G+  +    ++      AYV Q    
Sbjct: 32  LGRNGVGKTTLLKTLMGLLPVK-----SGSIRLDGEDITKLPPHERARAGIAYVPQGREI 86

Query: 55  FSQLTVRETLSLAAELQ-------LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKV 107
           F +LTV E L                EI             LF + L        GD   
Sbjct: 87  FPRLTVEENLLTGLAALPRRSRKIPDEIYE-----------LFPV-LKEMLGRRGGD--- 131

Query: 108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
             +SGG++++L++A  L+  P ++  DEPT G+     + +   +R+L  +G   I  + 
Sbjct: 132 --LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVE 189

Query: 168 QPRGSVYFKF-----DDIVLLTEGKLVYAGPARDEPLAYFSRF 205
           Q     Y  F     D   ++  G++V +G   +       R+
Sbjct: 190 Q-----YLDFARELADRYYVMERGRVVASGAGDELDEDKVRRY 227

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 47/220 (21%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVN-GKPSSNKAYKFAYVRQEDLFFSQLT 59
           +G SGSGK+TL+             H +GL++   G       Y        +L  +  +
Sbjct: 58  IGNSGSGKSTLVT------------HFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYS 105

Query: 60  --------VRETLSLAAELQLPEI-------------------LSVEERDEYVNSLLFKL 92
                   +R  +S+    Q PE                    +   E  +     L K+
Sbjct: 106 KKIKNFKELRRRVSMV--FQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKM 163

Query: 93  GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152
           GL    D +  +    G+SGG+K+R+++A  L   P ++  DEPT GLD     ++M+ +
Sbjct: 164 GL----DDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLI 219

Query: 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192
                +  TV    H     V    D+++++ +GK++  G
Sbjct: 220 LDAKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTG 258

Length = 320

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 40/215 (18%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +G +GSGK+TL+  +   L  +     +G + V+    ++K  K  Y+R          V
Sbjct: 39  VGQTGSGKSTLIQNINALLKPT-----TGTVTVDDITITHKT-KDKYIRP---------V 83

Query: 61  RETLSLAAELQLPEI-------------------LSVEERDEYVNSLLFKLGLVSCADSN 101
           R+ + +    Q PE                    ++++E   Y + LL  LG       +
Sbjct: 84  RKRIGMV--FQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGF----SRD 137

Query: 102 VGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHT 161
           V       +SGG+ +++++   L  +P +I  DEPT GLD     +VM  L+ L  D + 
Sbjct: 138 VMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENK 197

Query: 162 VICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196
            I  +      V    D+++++ EG +V     ++
Sbjct: 198 TIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232

Length = 286

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 60.2 bits (147), Expect = 2e-09
 Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 17/170 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFA------YVRQEDLF 54
           +G +G+GK+TL+ +L+G          SG + ++GKP +  + + A       V QE   
Sbjct: 40  LGENGAGKSTLMKILSGVYPPD-----SGEILIDGKPVAFSSPRDALAAGIATVHQELSL 94

Query: 55  FSQLTVRETLSLAAELQLPE-ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
              L+V E + L  E      ++  +        LL +LGL         D  V  +S  
Sbjct: 95  VPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGL-----DIDPDTLVGDLSIA 149

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           +++ + +A  L     V+  DEPT  L   + E++ + +R+L   G  +I
Sbjct: 150 QRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAII 199

Length = 500

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 21/199 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NKAYKFAYVRQEDLFFS-- 56
           +G SG GK+TL  +L G  +  P     G +   G+     ++  + A+ R   L F   
Sbjct: 43  LGRSGCGKSTLARLLLG--LEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDS 97

Query: 57  ------QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
                 ++TVR+   +   L+    L   E+   +  LL  +GL     S   D   R +
Sbjct: 98  PSAVNPRMTVRQ--IIGEPLRHLTSLDESEQKARIAELLDMVGL----RSEDADKLPRQL 151

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
           SGG+ +R+++A  L   P +I  DE  + LD      ++E LR+L Q   T    I    
Sbjct: 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL 211

Query: 171 GSVYFKFDDIVLLTEGKLV 189
             V      + ++ +G++V
Sbjct: 212 RLVQSFCQRVAVMDKGQIV 230

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 16/219 (7%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFFSQ-- 57
           +GPSGSGK+TLL  +      +P + ++G +  NG    +       +R+E  + F Q  
Sbjct: 37  IGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96

Query: 58  ---LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
              +++ E +     L+L  I   +  DE V   L    +       + D+ + G+SGG+
Sbjct: 97  PFPMSIYENVVYG--LRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSAL-GLSGGQ 153

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS-- 172
           ++R+ +A  L  SP +I  DEPT+ LD   A K+ E L  L  D   ++ +    + S  
Sbjct: 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRI 213

Query: 173 ----VYFKFDDIVLLTEGKLVYAGPARDEPLAYFS-RFG 206
                +F   D++   + K ++  P   E   Y S +FG
Sbjct: 214 SDRTGFFLDGDLIEYNDTKQMFMNPKHKETEDYISGKFG 252

Length = 252

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 26/184 (14%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG-----KPSSNKAYKFAYVRQEDLFF 55
           +G SGSGK+T L  +    +  P    +G + VNG     K   +   K A  RQ     
Sbjct: 38  IGSSGSGKSTFLRCI--NFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLR 92

Query: 56  SQLT-VRETLSLAAELQLPE--------ILSVEERD--EYVNSLLFKLGLVSCADSNVGD 104
           ++L  V +  +L + + + E        +L V + +  E     L K+G+   AD+    
Sbjct: 93  TRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAH 152

Query: 105 AKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVIC 164
                +SGG+++R+++A  L   P V+  DEPT+ LD     +V++ ++ LA++G T++ 
Sbjct: 153 -----LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVV 207

Query: 165 SIHQ 168
             H+
Sbjct: 208 VTHE 211

Length = 256

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 54/171 (31%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP----SSNKAYK--FAYV---RQED 52
           G  G+G+T L   L G      R   SG + ++GKP    S   A +   AYV   R+ +
Sbjct: 33  GLVGNGQTELAEALFGL-----RPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKRE 87

Query: 53  LFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
                L+V E ++L++ L                                        SG
Sbjct: 88  GLVLDLSVAENIALSSLL----------------------------------------SG 107

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           G ++++ LA  L   P V+  DEPT G+D     ++   +R+LA  G  V+
Sbjct: 108 GNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 17/177 (9%)

Query: 2   GPSGSGKTTLLNVL-AGQLMASPRL---HLSGLLEVNGKPSSNKAYKFAYVRQEDL-FFS 56
           GPSG+GK+TLL  L A  L  S R+   H    +++          +   VR++ + + S
Sbjct: 41  GPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS----PREVLEVRRKTIGYVS 96

Query: 57  Q-LTV---RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
           Q L V      L + AE  L   +  E        LL +L +       +        SG
Sbjct: 97  QFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNI----PERLWHLPPATFSG 152

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           GE++R+++A   IA   ++  DEPT  LDA   + V+E + +    G  +I   H  
Sbjct: 153 GEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE 209

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 60.4 bits (146), Expect = 2e-09
 Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 19/196 (9%)

Query: 1    MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFS 56
            +G +G+GKTT L++L G L  +     SG + V GK                 Q ++ F 
Sbjct: 962  LGHNGAGKTTTLSILTGLLPPT-----SGTVLVGGKDIETNLDAVRQSLGMCPQHNILFH 1016

Query: 57   QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
             LTV E +   A+L+     S EE    + ++L   GL      +  + + + +SGG ++
Sbjct: 1017 HLTVAEHILFYAQLKGR---SWEEAQLEMEAMLEDTGL-----HHKRNEEAQDLSGGMQR 1068

Query: 117  RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
            +LS+A   +    V+  DEPT+G+D +    + + L +  + G T+I S H    +    
Sbjct: 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLG 1127

Query: 177  FDDIVLLTEGKLVYAG 192
             D I ++++G+L  +G
Sbjct: 1128 -DRIAIISQGRLYCSG 1142

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 60.4 bits (146), Expect = 3e-09
 Identities = 54/171 (31%), Positives = 77/171 (45%), Gaps = 17/171 (9%)

Query: 1    MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS----SNKAYKFAYVRQEDLFFS 56
            +G +G+GKTT   +L G    +     SG   V GK      S+      Y  Q D    
Sbjct: 1971 LGVNGAGKTTTFKMLTGDTTVT-----SGDATVAGKSILTNISDVHQNMGYCPQFDAIDD 2025

Query: 57   QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
             LT RE L L A L+    +  EE ++  N  +  LGL   AD   G       SGG K+
Sbjct: 2026 LLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKR 2077

Query: 117  RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
            +LS A  LI  P ++  DEPTTG+D      +   +  + ++G  V+ + H
Sbjct: 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 14/201 (6%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLF---FSQ 57
           +G +GSGK+TL  +LAG  M  P    SG + +N  P     Y F   R   +F    + 
Sbjct: 45  IGENGSGKSTLAKMLAG--MIEPT---SGEILINDHPLHFGDYSFRSKRIRMIFQDPNTS 99

Query: 58  LTVRETLS--LAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
           L  R  +   L   L+L   L  E+R + +   L  +GL+     +  +     ++ G+K
Sbjct: 100 LNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP----DHANYYPHMLAPGQK 155

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
           +R++LA  LI  P +I ADE    LD     +++  + +L +        + Q  G +  
Sbjct: 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKH 215

Query: 176 KFDDIVLLTEGKLVYAGPARD 196
             D ++++ EG++V  G   D
Sbjct: 216 ISDQVLVMHEGEVVERGSTAD 236

Length = 267

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 19/205 (9%)

Query: 1   MGPSGSGKTT----LLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY---KFAYVRQE-- 51
           +G SGSGK+     +L +L   L  +     SG + ++G+P    +      A + Q   
Sbjct: 18  VGESGSGKSLTCLAILGLLPPGLTQT-----SGEILLDGRPLLPLSIRGRHIATIMQNPR 72

Query: 52  DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
             F    T+         L+    LS + R   + +L   +GL    +  V       +S
Sbjct: 73  TAFNPLFTMGN--HAIETLRSLGKLSKQARALILEALE-AVGLPDPEE--VLKKYPFQLS 127

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171
           GG  +R+ +A  L+  P  + ADEPTT LD     +V++ LR+L Q   T I  I    G
Sbjct: 128 GGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG 187

Query: 172 SVYFKFDDIVLLTEGKLVYAGPARD 196
            V    D++ ++ +G++V  G  ++
Sbjct: 188 VVARIADEVAVMDDGRIVERGTVKE 212

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 54/208 (25%), Positives = 82/208 (39%), Gaps = 64/208 (30%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           MGP+GSGK+TL   +                   G P     Y+   V + ++ F    +
Sbjct: 32  MGPNGSGKSTLAKTIM------------------GHPK----YE---VTEGEILFKGEDI 66

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGL------------VSCAD--SNVGDAK 106
            +             L  EER         +LG+            V  AD    V +  
Sbjct: 67  TD-------------LPPEER--------ARLGIFLAFQYPPEIPGVKNADFLRYVNE-- 103

Query: 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
             G SGGEKKR  +   L+  P +   DEP +GLD      V E + +L ++G +V+   
Sbjct: 104 --GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIIT 161

Query: 167 HQPRGSVYFKFDDIVLLTEGKLVYAGPA 194
           H  R   Y K D + +L +G++V +G  
Sbjct: 162 HYQRLLDYIKPDRVHVLYDGRIVKSGDK 189

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 59.6 bits (145), Expect = 3e-09
 Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 53/200 (26%)

Query: 1   MGPSGSGKTTLLNVLAG--QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQL 58
           +G +G+GK+TLL ++AG  +             E NG+       K  Y+ QE       
Sbjct: 37  LGLNGAGKSTLLRIMAGVDK-------------EFNGEARPAPGIKVGYLPQEPQLDPTK 83

Query: 59  TVRETLSLAAELQLPEILSVEER-----------DEYVNSLLFKLGLVSCA--------- 98
           TVRE +    E  + EI    +R           D  +++LL +   +            
Sbjct: 84  TVRENV----EEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDL 139

Query: 99  DSNV-----------GDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147
           D  +            DA V  +SGGE++R++L   L++ P ++  DEPT  LD   AE 
Sbjct: 140 DRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD---AES 196

Query: 148 VMEALRQLAQDGHTVICSIH 167
           V    + L +   TV+   H
Sbjct: 197 VAWLEQHLQEYPGTVVAVTH 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 31/218 (14%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLH---LSGLLEVNGKP-SSNKAYKFAYVR------- 49
           +G +G+GK+TLL  LAG L          ++G + +NG+P ++  A + A +R       
Sbjct: 33  LGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92

Query: 50  QEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAK-VR 108
           Q    FS    RE + L          ++  RD  +      L     A +     + V 
Sbjct: 93  QPAFAFS---AREIVLLGRYPHARRAGALTHRDGEIAWQALAL-----AGATALVGRDVT 144

Query: 109 GISGGEKKRLSLACEL---------IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159
            +SGGE  R+  A  L            P  +  DEPT  LD     ++++ +R+LA+D 
Sbjct: 145 TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDW 204

Query: 160 HT-VICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196
           +  V+  +H P  +     D I +L +G +V  G   D
Sbjct: 205 NLGVLAIVHDPNLAARHA-DRIAMLADGAIVAHGAPAD 241

Length = 272

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 16/163 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQ 57
           +GPSGSGKTTLL ++AG          SG +  +G   S    +  K  +V Q    F  
Sbjct: 34  LGPSGSGKTTLLRIIAGL-----EHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRH 88

Query: 58  LTVRETLSLAAELQLP--EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
           +TV + ++    + LP  E  +       V  LL  + L   AD          +SGG+K
Sbjct: 89  MTVFDNIAFGLTV-LPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQ-----LSGGQK 142

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158
           +R++LA  L   P ++  DEP   LDA   +++   LRQL ++
Sbjct: 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE 185

Length = 353

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 23/177 (12%)

Query: 1   MGPSGSGKTTLL---NVL----AGQLMASPRLHLSGLLEVNGKPSSNKAYKF--AYVRQE 51
           +GPSGSGK+TLL   N L    +G L       +   L+VN      +  +     V Q+
Sbjct: 33  IGPSGSGKSTLLRCINKLEEITSGDL-------IVDGLKVNDPKVDERLIRQEAGMVFQQ 85

Query: 52  DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
              F  LT  E +     L++    S EE ++    LL K+GL   A     +     +S
Sbjct: 86  FYLFPHLTALENVMFGP-LRV-RGASKEEAEKQARELLAKVGLAERAHHYPSE-----LS 138

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           GG+++R+++A  L   P ++  DEPT+ LD     +V++ ++ LA++G T++   H+
Sbjct: 139 GGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195

Length = 240

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 20/210 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK---FAYVRQEDLFFSQ 57
           +GPSG GKTT+L ++AG  +  P     G + ++G+  ++++ +      V Q    F  
Sbjct: 38  LGPSGCGKTTVLRLVAG--LEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPH 92

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           +++ E +    ++     +  EER + V      L LV  A     D  V  ISGG+++R
Sbjct: 93  MSLGENVGYGLKMLG---VPKEERKQRVKE---ALELVDLA--GFEDRYVDQISGGQQQR 144

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFK 176
           ++LA  LI  P V+  DEP + LDA     + E +R+L Q    T +   H    S  F 
Sbjct: 145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ--SEAFA 202

Query: 177 FDDIVL-LTEGKLVYAGPARDEPLAYFSRF 205
             D V+ + +GK++  G  ++      SRF
Sbjct: 203 VSDTVIVMNKGKIMQIGSPQELYRQPASRF 232

Length = 351

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 57.1 bits (138), Expect = 7e-09
 Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 27/208 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK----PSSNKAYKFAYVRQE-DLFF 55
           +G +GSGK+T++ +L G  + +      G + V+       S NK  K   +R++  L F
Sbjct: 39  IGHTGSGKSTIMQLLNGLHVPT-----QGSVRVDDTLITSTSKNKDIKQ--IRKKVGLVF 91

Query: 56  ----SQL---TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
               SQL   TV + ++       P+   V + +E       KL LV  ++ ++ +    
Sbjct: 92  QFPESQLFEETVLKDVAFG-----PQNFGVSQ-EEAEALAREKLALVGISE-SLFEKNPF 144

Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
            +SGG+ +R+++A  L   P ++  DEPT GLD    +++M   ++L Q G T++   H 
Sbjct: 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHL 204

Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD 196
                 +  D + +L +GKLV +G  +D
Sbjct: 205 MDDVANYA-DFVYVLEKGKLVLSGKPKD 231

Length = 280

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.6 bits (136), Expect = 8e-09
 Identities = 52/219 (23%), Positives = 99/219 (45%), Gaps = 15/219 (6%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFFSQLT 59
           +GPSG GK+T+L  +       P   ++G + ++     ++      +R+   + F +  
Sbjct: 36  IGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95

Query: 60  VRETLSL----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
               +S+     A  +L   ++  E DE V S L ++ L       +  +    +SGG++
Sbjct: 96  PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQ 154

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG---- 171
           +RL +A  +   P VI  DEP + LD     K+ E + +L ++ +T+I   H  +     
Sbjct: 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL-KEKYTIIIVTHNMQQAARV 213

Query: 172 ---SVYFKFDDIVLLTEGKLVYAGPARDEPLAYFS-RFG 206
              + +F   D+V   E K ++  P + +   Y + RFG
Sbjct: 214 SDYTAFFYMGDLVECGETKKIFTTPEKKQTEDYITGRFG 252

Length = 252

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 57.9 bits (140), Expect = 9e-09
 Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 31/214 (14%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK---PSSN-KAYK--FAYV---RQED 52
           G  GSG+T L+N L G      R    G + +NGK   P S   A K   AY+   R+++
Sbjct: 296 GLVGSGRTELMNCLFG---VDKRA--GGEIRLNGKDISPRSPLDAVKKGMAYITESRRDN 350

Query: 53  LFFSQLTVRETLSLAAELQLPEILS----VEERDE--YVNSLLFKLGLVSCA--DSNVGD 104
            FF   ++ + ++++  L+            E DE     +    L L  C   + N+ +
Sbjct: 351 GFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLAL-KCHSVNQNITE 409

Query: 105 AKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI- 163
                +SGG ++++ ++  L   P VI  DEPT G+D     ++ + +RQLA DG  ++ 
Sbjct: 410 -----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILM 464

Query: 164 CSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197
            S   P   +    D I +  EG+L      RD+
Sbjct: 465 VSSELPE--IITVCDRIAVFCEGRLTQILTNRDD 496

Length = 510

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.2 bits (135), Expect = 9e-09
 Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 11/202 (5%)

Query: 1   MGPSGSGKTTLLNVLAGQL-MASPRLHLSGLLEVNGK-----PSSNKAYKFAYVRQEDLF 54
           MGPSGSGK+TLL VL   + +   ++ + G +   GK      +     +   V Q+   
Sbjct: 42  MGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNP 101

Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
           F  L++ +  ++A  L+   I    E  + V   L K+GL       + ++    +SGG+
Sbjct: 102 FPHLSIYD--NIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSGGQ 158

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
           ++RL++A  L   P V+  DEPT+ +D   ++ + + + +L  +   VI S H P+    
Sbjct: 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVS-HNPQQVAR 217

Query: 175 FKFDDIVLLTEGKLVYAGPARD 196
              D +  L  G+LV  G + +
Sbjct: 218 VA-DYVAFLYNGELVEWGSSNE 238

Length = 257

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 27/209 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAY------VRQEDLF 54
           +G +G+GK+TL+ VL+G    +      G + +N    +   +K A       + QE   
Sbjct: 37  LGENGAGKSTLMKVLSGIHEPT-----KGTITINNINYNKLDHKLAAQLGIGIIYQELSV 91

Query: 55  FSQLTVRETLSLAAELQLP-------EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKV 107
             +LTV E L +    +          I+   E       +L ++GL    D  V +   
Sbjct: 92  IDELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVAN--- 145

Query: 108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
             +S   K+ L +A  L+    VI  DEPT+ L   + + +   + QL ++G T I  I 
Sbjct: 146 --LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG-TAIVYIS 202

Query: 168 QPRGSVYFKFDDIVLLTEGKLVYAGPARD 196
                +    D   ++ +G  V +G   D
Sbjct: 203 HKLAEIRRICDRYTVMKDGSSVCSGMVSD 231

Length = 510

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 23/179 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK----PSSNKAYKFAYVRQE-DLFF 55
           +GPSG+GK++LL VL   L+  PR   SG L + G       +        +R+   + F
Sbjct: 34  LGPSGAGKSSLLRVL--NLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVF 88

Query: 56  SQ------LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRG 109
            Q      LTV++ L  A    L   LS ++       LL +L L         D     
Sbjct: 89  QQYNLWPHLTVQQNLIEAPCRVLG--LSKDQALARAEKLLERLRL-----KPYADRFPLH 141

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           +SGG+++R+++A  L+  P V+  DEPT  LD     +++  +R+LA+ G T +   H+
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200

Length = 242

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 24/202 (11%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-----KFAYVRQEDLFF 55
           +GPSG+GK+TL+ ++    +  P     G + ++G             K   V Q+   F
Sbjct: 35  VGPSGAGKSTLIKLI--NRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLF 89

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
              TV++ +     L+        E++  V   L  +GL    +       V+ +SGGE 
Sbjct: 90  EG-TVKDNIEYGPMLK-------GEKNVDVEYYLSIVGL----NKEYATRDVKNLSGGEA 137

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVY 174
           +R+S+A  L  +P V+  DEPT+ LD    E + E + +L      TVI   H    +  
Sbjct: 138 QRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKR 197

Query: 175 FKFDDIVLLTEGKLVYAGPARD 196
              D    L +G LV      D
Sbjct: 198 IG-DYTAFLNKGILVEYAKTYD 218

Length = 241

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 46/175 (26%), Positives = 66/175 (37%), Gaps = 58/175 (33%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           G SGSGK+TL+N     L AS +  L   L                 R + +F  QL   
Sbjct: 28  GVSGSGKSTLVNEG---LYASGKARLISFLPKFS-------------RNKLIFIDQL--- 68

Query: 62  ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVG----DAKVRGISGGEKKR 117
                                      L  +GL        G      K+  +SGGE +R
Sbjct: 69  -------------------------QFLIDVGL--------GYLTLGQKLSTLSGGELQR 95

Query: 118 LSLACELIASP--SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
           + LA EL + P  ++   DEP+TGL      +++E ++ L   G+TVI   H   
Sbjct: 96  VKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 27/200 (13%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHL----SGLLEVNGKPSSNKAYKF-----AYVRQED 52
           GPSGSGK+T+         A+   +L     G + ++G P     + +     A V QE 
Sbjct: 514 GPSGSGKSTV---------AALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEP 564

Query: 53  LFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
           + FS  +VRE  ++A  L       +    +  N+  F +   +  D+ VG+   + +SG
Sbjct: 565 VLFSG-SVRE--NIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ-LSG 620

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
           G+K+R+++A  L+  P V+  DE T+ LDA + E++++  R  A    TV+   H  R S
Sbjct: 621 GQKQRIAIARALVRKPRVLILDEATSALDA-ECEQLLQESRSRA--SRTVLLIAH--RLS 675

Query: 173 VYFKFDDIVLLTEGKLVYAG 192
              + D I++L +G +V  G
Sbjct: 676 TVERADQILVLKKGSVVEMG 695

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 22/206 (10%)

Query: 1   MGPSGSGKTTLLNVLAG---------QLMASPRLHLSG----LLEVNGKPSSNKAYKFAY 47
           +GPSGSGK+T+L +L           Q+      H+ G    L+  + K       K   
Sbjct: 32  IGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91

Query: 48  VRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKV 107
           V Q    F   TV + ++ A  L L  +   E     +  LL  +GL   AD        
Sbjct: 92  VFQSFNLFPHKTVLDNVTEAPVLVL-GMARAEAEKRAM-ELLDMVGLADKADHMPAQ--- 146

Query: 108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH-TVICSI 166
             +SGG+++R+++A  L   P V+  DE T+ LD     +V+  +R+LA +   T++   
Sbjct: 147 --LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVT 204

Query: 167 HQPRGSVYFKFDDIVLLTEGKLVYAG 192
           H+   +  F  D +    +G++V  G
Sbjct: 205 HEMGFAREFA-DRVCFFDKGRIVEQG 229

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 40/183 (21%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQ--- 57
            GP+G+GKT+LL +LAG  +A P    +G +   G+P           RQ D +      
Sbjct: 33  EGPNGAGKTSLLRILAG--LARPD---AGEVLWQGEPIR---------RQRDEYHQDLLY 78

Query: 58  ----------LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKV 107
                     LT  E L           L     DE +   L ++GL     +   D  V
Sbjct: 79  LGHQPGIKTELTALENLRFYQR------LHGPGDDEALWEALAQVGL-----AGFEDVPV 127

Query: 108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL-RQLAQDGHTVICSI 166
           R +S G+++R++LA   +    +   DEP T +D  Q    +EAL  Q A+ G  VI + 
Sbjct: 128 RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK-QGVARLEALLAQHAEQGGMVILTT 186

Query: 167 HQP 169
           HQ 
Sbjct: 187 HQD 189

Length = 204

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 24/205 (11%)

Query: 1   MGPSGSGKTTLLNVLAGQLM---ASPRLHLSGLLEVN----GKPSSNKAYKFAYVRQEDL 53
           +GPSGSGK+TL  ++ G       S RL  + L + +    GK          Y+ Q+  
Sbjct: 350 IGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK-------HIGYLPQDVE 402

Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
            F   TV E ++   E   PE +    +   V+ L+  L L    D+ +G      +SGG
Sbjct: 403 LFPG-TVAENIARFGENADPEKIIEAAKLAGVHELI--LRLPDGYDTVIGPGGA-TLSGG 458

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR--G 171
           +++R++LA  L   P ++  DEP + LD    + +  A++ L   G TV+   H+P   G
Sbjct: 459 QRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG 518

Query: 172 SVYFKFDDIVLLTEGKLVYAGPARD 196
            V    D I++L +G++   G   +
Sbjct: 519 CV----DKILVLQDGRIARFGERDE 539

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 56.9 bits (138), Expect = 2e-08
 Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 26/213 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG-------KPSSNKAYKFAYVRQEDLF 54
           GP+G+GK+TL+N+L  Q +  P+   SG + ++G       + S  +    A V Q+   
Sbjct: 368 GPTGAGKSTLINLL--QRVFDPQ---SGRILIDGTDIRTVTRASLRRN--IAVVFQDAGL 420

Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRG--ISG 112
           F++ ++ + + +       E   +    E   +  F        D+ VG+   RG  +SG
Sbjct: 421 FNR-SIEDNIRVGRPDATDE--EMRAAAERAQAHDFIERKPDGYDTVVGE---RGRQLSG 474

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
           GE++RL++A  L+  P ++  DE T+ LD     KV  AL +L +   T I + H  R S
Sbjct: 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIA-H--RLS 531

Query: 173 VYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRF 205
                D I++   G++V +G + DE +A   RF
Sbjct: 532 TVRNADRILVFDNGRVVESG-SFDELVARGGRF 563

Length = 588

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 53/198 (26%), Positives = 97/198 (48%), Gaps = 21/198 (10%)

Query: 2   GPSGSGKTTLLNVLAGQLMASP---RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQL 58
           GPSG+GK+TL  +L       P   R+ L G+      P+  +A + A V Q+ + F+  
Sbjct: 373 GPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAELRA-RMALVPQDPVLFAA- 428

Query: 59  TVRETLSL----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
           +V E +      A + ++          E++        L    D+ +G+  V  +SGG+
Sbjct: 429 SVMENIRYGRPDATDEEVEAAARAAHAHEFI------SALPEGYDTYLGERGVT-LSGGQ 481

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
           ++R+++A  ++    ++  DE T+ LDA   + V +AL  L +   T+I + H  R +  
Sbjct: 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIA-H--RLATV 538

Query: 175 FKFDDIVLLTEGKLVYAG 192
            K D IV++ +G++V  G
Sbjct: 539 LKADRIVVMDQGRIVAQG 556

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 56.4 bits (137), Expect = 3e-08
 Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 22/171 (12%)

Query: 5   GSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP----SSNKAYK--FAYV---RQEDLFF 55
           G+G+T L   L G      R   SG + ++GKP    S   A K   AYV   R+ +   
Sbjct: 295 GAGRTELARALFGA-----RPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLV 349

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDE--YVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
             +++ E ++LA+  +      ++ R E       + +L  +        +  +  +SGG
Sbjct: 350 LDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLR-IKTPSP---EQPIGTLSGG 405

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGHTVI 163
            ++++ LA  L   P V+  DEPT G+D   +AE +   +R+LA +G  ++
Sbjct: 406 NQQKVVLARWLATDPKVLILDEPTRGIDVGAKAE-IYRLIRELAAEGKAIL 455

Length = 500

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 7/200 (3%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +GPSG GKTTLL  +       P   + G +   G+   +        R++     Q   
Sbjct: 35  IGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94

Query: 61  RETLSL----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
              +S+    A   ++  + S  + D  V   L K  L     S + +     +SGG+++
Sbjct: 95  PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTRLSGGQQQ 153

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           RL +A  L   P VI  DEPT+ LD    +++ + L +L+++ +T++   H    ++   
Sbjct: 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSEN-YTIVIVTHNIGQAIRIA 212

Query: 177 FDDIVLLTEGKLVYAGPARD 196
            D I  +  G+L+  GP R+
Sbjct: 213 -DYIAFMYRGELIEYGPTRE 231

Length = 250

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 68/247 (27%), Positives = 93/247 (37%), Gaps = 74/247 (29%)

Query: 1   MGPSGSGKTTLLNVLAG-------------------QLMASPRLHLSGLL------EVNG 35
           MGP+GSGK+TL  V+AG                    L    R HL   L      E+ G
Sbjct: 39  MGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPG 98

Query: 36  KPSSNKAYKFAYVRQEDLFFSQLTVRETLSLA-----AELQLPEILSVEERDEYVNSLLF 90
                       V   D           L LA         LPE+  +E   E +N    
Sbjct: 99  ------------VSNADF----------LRLAYNSKRKFQGLPELDPLEFL-EIINE--- 132

Query: 91  KLGLVSCADS----NVGDAKVRGISGGEKKR---LSLACELIASPSVIYADEPTTGLDAF 143
           KL LV    S    NV +    G SGGEKKR   L +A   +    +   DE  +GLD  
Sbjct: 133 KLKLVGMDPSFLSRNVNE----GFSGGEKKRNEILQMA---LLDSELAILDETDSGLDID 185

Query: 144 QAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLA-YF 202
             + + E + +L    +++I   H  R   Y K D + ++  GK++  G   D  LA   
Sbjct: 186 ALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG---DAELAKEL 242

Query: 203 SRFGYTC 209
            + GY  
Sbjct: 243 EKKGYDW 249

Length = 252

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 18/220 (8%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFFSQ-- 57
           +GPSG GK+T L +        P   L G + ++G+   +K  +   +R+   + F +  
Sbjct: 35  IGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94

Query: 58  ---LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
               ++ E  ++A  L++  +       + V   L    L       + ++    +SGG+
Sbjct: 95  PFPKSIFE--NVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAF-ALSGGQ 151

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV- 173
           ++RL +A  +  SPSV+  DEP + LD     KV E + +L +D +T++   H  + +  
Sbjct: 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKD-YTIVIVTHNMQQAAR 210

Query: 174 ------YFKFDDIVLLTEGKLVYAGPARDEPLAYFS-RFG 206
                 +F   ++V   + K ++  P ++    Y + RFG
Sbjct: 211 VSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQNYITGRFG 250

Length = 250

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 36/206 (17%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGL------------LEVNGKPSSNKAYKFAYV 48
           +GP+G+GK+TLL            LHL+G+             EVN +       K   V
Sbjct: 37  LGPNGAGKSTLL------------LHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLV 84

Query: 49  RQE--DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAK 106
            Q+  D  FS  TV + ++          L  +E +  V   L  + +    D       
Sbjct: 85  FQDPDDQVFSS-TVWDDVAFGPVNMG---LDKDEVERRVEEALKAVRMWDFRDK-----P 135

Query: 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
              +S G+KKR+++A  L   P VI  DEP   LD    E +ME L +L   G TVI + 
Sbjct: 136 PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVAT 195

Query: 167 HQPRGSVYFKFDDIVLLTEGKLVYAG 192
           H    +  +  D +++L EG+++  G
Sbjct: 196 HDVDLAAEWA-DQVIVLKEGRVLAEG 220

Length = 274

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 56.0 bits (136), Expect = 4e-08
 Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 23/176 (13%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-----SSNKAYK--FAYV---RQE 51
           G +G+G++ L+  ++G      R   SG + +NGK      S  +  +   AYV   R  
Sbjct: 291 GVAGNGQSELVEAISGL-----RKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHG 345

Query: 52  DLFFSQLTVRETLSLAAELQLPE----ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKV 107
                 L++ E L L    + P      L      ++   L+ +  + + +     DA  
Sbjct: 346 HGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DAPA 401

Query: 108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           R +SGG +++L LA EL   P ++ A +PT GLD    E + E L +L   G  V+
Sbjct: 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457

Length = 501

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 56.1 bits (136), Expect = 4e-08
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 19/197 (9%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-----KAYKFAYVRQEDLFFS 56
           G SGSGK+T+  ++AG          SG +  +G P         A   A V Q+   F 
Sbjct: 512 GGSGSGKSTIAKLVAGLY-----QPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLF- 565

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
           + TVR+ L+L         L    +D  ++ ++         D+ + +     +SGG+++
Sbjct: 566 EGTVRDNLTLWDPTIPDADLVRACKDAAIHDVI--TSRPGGYDAELAEGG-ANLSGGQRQ 622

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           RL +A  L+ +PS++  DE T+ LD    + + + LR   + G T I   H  R S    
Sbjct: 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLR---RRGCTCIIVAH--RLSTIRD 677

Query: 177 FDDIVLLTEGKLVYAGP 193
            D+I++L  GK+V  G 
Sbjct: 678 CDEIIVLERGKVVQRGT 694

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 32/149 (21%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--KAYKFAYVRQEDLFFSQLT 59
           G +G+GKTTLL VLAG L        SG ++++GK ++   ++   AY+       + L+
Sbjct: 44  GDNGAGKTTLLRVLAGLLHVE-----SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLS 98

Query: 60  VRETLSLAAEL------QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
             E L     L      Q+P             S L  +GL         D  VR +S G
Sbjct: 99  TLENLHFLCGLHGRRAKQMP------------GSALAIVGLAGYE-----DTLVRQLSAG 141

Query: 114 EKKRLSLACELIASPSVIY-ADEPTTGLD 141
           +KKRL+LA  L  SP+ ++  DEP   LD
Sbjct: 142 QKKRLALA-RLWLSPAPLWLLDEPYANLD 169

Length = 214

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 33/215 (15%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK----PSSNKAYKFAYVRQEDLFF-- 55
           G +GSGK+TL+      L  S     SG + + G      + NK  K    ++  L F  
Sbjct: 40  GHTGSGKSTLMQHFNALLKPS-----SGTITIAGYHITPETGNKNLK-KLRKKVSLVFQF 93

Query: 56  --SQL---TVRETLSLAAELQLPEILSVEERDEYVNSL--LFKLGLVSCADSNVGDAKVR 108
             +QL   TV + +        P+     E +    +L  L K+GL      ++      
Sbjct: 94  PEAQLFENTVLKDVEFG-----PKNFGFSEDEAKEKALKWLKKVGL----SEDLISKSPF 144

Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
            +SGG+ +R+++A  +   P ++  DEP  GLD    +++M+  +   + GHTVI   H 
Sbjct: 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204

Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFS 203
               V    DD+++L  GKL+        P   FS
Sbjct: 205 -MDDVAEYADDVLVLEHGKLI----KHASPKEIFS 234

Length = 287

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 54/211 (25%), Positives = 104/211 (49%), Gaps = 23/211 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLM----ASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFF 55
           +G +GSGK+T+  ++ G L+     + ++ + G+  +  K   +   K   V Q  D  F
Sbjct: 39  IGHNGSGKSTISKLINGLLLPDDNPNSKITVDGI-TLTAKTVWDIREKVGIVFQNPDNQF 97

Query: 56  SQLTVRETLSLAAE-LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
              TV + ++   E   +P      E  + V  +L  +G++   DS   +     +SGG+
Sbjct: 98  VGATVGDDVAFGLENRAVPR----PEMIKIVRDVLADVGMLDYIDSEPAN-----LSGGQ 148

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI-HQPRGSV 173
           K+R+++A  L   P +I  DE T+ LD    E++++ +R+L +  +  + SI H    + 
Sbjct: 149 KQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN 208

Query: 174 YFKFDDIVLLTEGKLVYAGPARDEPLAYFSR 204
               D +++L +GKL+    A+  P+  FS+
Sbjct: 209 M--ADQVLVLDDGKLL----AQGSPVEIFSK 233

Length = 282

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 54.2 bits (130), Expect = 4e-08
 Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 30/211 (14%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG-------------KPSSNKAYKFAY 47
           +G SGSGK+T L  +    +  P     G + VNG             K +     +   
Sbjct: 37  IGSSGSGKSTFLRCI--NFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLR 91

Query: 48  VRQEDLF-----FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNV 102
            R   +F     +S +TV E + + A +Q+  +   E R+  V      L  V   +   
Sbjct: 92  TRLTMVFQHFNLWSHMTVLENV-MEAPIQVLGLSKQEARERAV----KYLAKVGIDERAQ 146

Query: 103 GDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTV 162
           G   V  +SGG+++R+S+A  L   P V+  DEPT+ LD     +V+  ++QLA++G T+
Sbjct: 147 GKYPVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205

Query: 163 ICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP 193
           +   H+   + +     ++ L +GK+   G 
Sbjct: 206 VVVTHEMGFARHVS-SHVIFLHQGKIEEEGA 235

Length = 257

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 55.6 bits (135), Expect = 5e-08
 Identities = 54/186 (29%), Positives = 78/186 (41%), Gaps = 59/186 (31%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS--------------------SNK 41
           GP+G GKTT + +L+G+L+  P L   G  +   +PS                     N 
Sbjct: 106 GPNGIGKTTAVKILSGELI--PNL---G--DYEEEPSWDEVLKRFRGTELQNYFKKLYNG 158

Query: 42  ----AYKFAYVRQEDLFFSQL--TVRETLSLAAELQLPEILSVEER---DEYVNSLLFKL 92
                +K  YV   DL        VRE L             V+ER   DE V     +L
Sbjct: 159 EIKVVHKPQYV---DLIPKVFKGKVRELLK-----------KVDERGKLDEVVE----RL 200

Query: 93  GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152
           GL      N+ D  +  +SGGE +R+++A  L+      + DEPT+ LD  Q   V   +
Sbjct: 201 GL-----ENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI 255

Query: 153 RQLAQD 158
           R+LA+ 
Sbjct: 256 RELAEG 261

Length = 590

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 38/224 (16%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQE 51
           MG SGSGK+TLL  +   +  +     SG + ++G+  +          +  K + V Q 
Sbjct: 56  MGLSGSGKSTLLRCINRLIEPT-----SGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110

Query: 52  DLFFSQLTVRETLSLAAELQ-LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
                  TV E ++   E+Q +P      ER+E     L  +GL               +
Sbjct: 111 FALLPHRTVLENVAFGLEVQGVPR----AEREERAAEALELVGL-----EGWEHKYPDEL 161

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIHQP 169
           SGG ++R+ LA  L   P ++  DE  + LD     ++ + L +L A+   T++   H  
Sbjct: 162 SGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL 221

Query: 170 RGSVYFKFDDIVLLTEGKLVYAG--------PARDEPLAYFSRF 205
             ++    D I ++ +G+LV  G        PA D    Y   F
Sbjct: 222 DEALRLG-DRIAIMKDGRLVQVGTPEEILTNPAND----YVREF 260

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 22/173 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-----KFAYVRQEDLFFS 56
           GP+G+GKTT+++V+ G+        L G  ++ G P    A      KF    Q+   F 
Sbjct: 35  GPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKF----QKPTVFE 90

Query: 57  QLTVRETLSLAAELQ------LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
            LTV E L LA          L   LS EE+D  +  +L  +GL   AD   G      +
Sbjct: 91  NLTVFENLELALPRDKSVFASLFFRLSAEEKDR-IEEVLETIGLADEADRLAGL-----L 144

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           S G+K+ L +   L+  P ++  DEP  G+   + EK  E L+ LA   H+V+
Sbjct: 145 SHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGK-HSVV 196

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 53.4 bits (129), Expect = 8e-08
 Identities = 56/203 (27%), Positives = 87/203 (42%), Gaps = 20/203 (9%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           GP+G+GK+TLL  +AG L  S  +  +G   +    ++  A   AY+ Q+      + V 
Sbjct: 29  GPNGAGKSTLLARMAGLLPGSGSIQFAGQP-LEAWSAAELARHRAYLSQQQTPPFAMPVF 87

Query: 62  ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA 121
           + L+    L  P+    E     +N +   LGL      +V       +SGGE +R+ LA
Sbjct: 88  QYLT----LHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQ-----LSGGEWQRVRLA 138

Query: 122 --CELIASPSV------IYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
               L   P +      +  DEP   LD  Q   +   L +L Q G  V+ S H      
Sbjct: 139 AVV-LQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD-LNHT 196

Query: 174 YFKFDDIVLLTEGKLVYAGPARD 196
               D + LL +GKL+ +G   +
Sbjct: 197 LRHADRVWLLKQGKLLASGRRDE 219

Length = 248

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 54.7 bits (132), Expect = 8e-08
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 34/207 (16%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP----SSNKAYKFA--YVRQEDLF 54
           +G +G+GK+TL+ ++AG +        SG LE+ G P    +  KA++     V QE L 
Sbjct: 43  LGGNGAGKSTLMKIIAGIVPPD-----SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLL 97

Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL-----VSCADSNVGDAKVRG 109
           F  L+V+E +       LP+  +  ++   +  LL  LG       S     V D ++  
Sbjct: 98  FPNLSVKENILFG----LPKRQASMQK---MKQLLAALGCQLDLDSSAGSLEVADRQIVE 150

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           I  G          L+    ++  DEPT  L   + E++   +R+L   G  ++   H+ 
Sbjct: 151 ILRG----------LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL 200

Query: 170 RGSVYFKFDDIVLLTEGKLVYAGPARD 196
              +    D I ++ +G +  +G   D
Sbjct: 201 P-EIRQLADRISVMRDGTIALSGKTAD 226

Length = 510

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 2/111 (1%)

Query: 79  EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT 138
           +  DE V   L +  L    +  + D  + G+SGG+++RL +A  L   P VI  DEP +
Sbjct: 171 DAEDELVERSLRQAALWDEVNDRLDDNAL-GLSGGQQQRLCIARCLAVDPEVILMDEPAS 229

Query: 139 GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV 189
            LD     K+ + + +LA++ +TV+   H  + +        V LT G+LV
Sbjct: 230 ALDPIATSKIEDLIEELAEE-YTVVVVTHNMQQAARISDQTAVFLTGGELV 279

Length = 305

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 54.9 bits (132), Expect = 9e-08
 Identities = 58/199 (29%), Positives = 101/199 (50%), Gaps = 21/199 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG-------KPSSNKAYKFAYVRQEDL 53
           +GP+G+GKTTL+N+L  Q +  P     G + ++G       + S  K+   A V Q+  
Sbjct: 367 VGPTGAGKTTLINLL--QRVYDPT---VGQILIDGIDINTVTRESLRKS--IATVFQDAG 419

Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
            F++ ++RE + L  E    E   V E  +   +  F L   +  D+ VG+   R +SGG
Sbjct: 420 LFNR-SIRENIRLGREGATDE--EVYEAAKAAAAHDFILKRSNGYDTLVGERGNR-LSGG 475

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
           E++RL++A  ++ +  ++  DE T+ LD     +V  A+  L ++  T I + H  R S 
Sbjct: 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIA-H--RLST 532

Query: 174 YFKFDDIVLLTEGKLVYAG 192
               D ++ L +G+L+  G
Sbjct: 533 VRNADLVLFLDQGRLIEKG 551

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 22/164 (13%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-----SSNKA----YKFAYVRQE 51
           +G SGSGK+TLL++L G  + +P    SG +  NG+P     S+ KA     K  ++ Q 
Sbjct: 41  VGSSGSGKSTLLHLLGG--LDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQF 95

Query: 52  DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
                  T  E +++      P ++  ++  E  +  L  L  V        + +   +S
Sbjct: 96  HHLLPDFTALENVAM------PLLIGKKKPAEINSRALEMLAAVGLEHR--ANHRPSELS 147

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155
           GGE++R+++A  L+ +P ++ ADEPT  LDA  A+ + + L +L
Sbjct: 148 GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGEL 191

Length = 233

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
            +SGG+K+R++LA  L   P  +  DEPT GLD    ++++E    L + G T+I   H
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223

Length = 305

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSI 166
           R +SGGEK+R+ LA +L   P +  ADEPT  LD   A+ V  AL +  +  G +++ + 
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226

Query: 167 HQPRGSVYFKFDD-IVLLTEGKLVYAGPARDEPLAYFSRFGYTCPD 211
           H P   V     D  + L  G++   G     P    + F     +
Sbjct: 227 HWPE--VIEDLSDKAIWLENGEIKEEG----TPDEVVAVFMEGVSE 266

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 33/183 (18%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDL--FFS 56
           +GP+G GK+T L +LAG+L   P L         GK      +       R  +L  +F+
Sbjct: 32  VGPNGIGKSTALKILAGKLK--PNL---------GKFDDPPDWDEILDEFRGSELQNYFT 80

Query: 57  QLTVRETLSLAAELQ----LP--------EILSVEERDEYVNSLLFKLGLVSCADSNVGD 104
           +L +   + +  + Q    +P        E+L  ++    ++ L+ +L L      +V D
Sbjct: 81  KL-LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLEL-----RHVLD 134

Query: 105 AKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVIC 164
             +  +SGGE +R+++A  L       + DEP++ LD  Q       +R+LA+D + V+ 
Sbjct: 135 RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLV 194

Query: 165 SIH 167
             H
Sbjct: 195 VEH 197

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 55/172 (31%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +G +G+GK+TLL +LAG          SG + V G+ SS              F  +LT 
Sbjct: 54  IGRNGAGKSTLLRLLAGIYPPD-----SGTVTVRGRVSSLLGLGGG-------FNPELTG 101

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLL-F-KLGLVSCADSNVGDAKVRGISGGEKKRL 118
           RE + L   L     LS +E DE ++ ++ F +LG       +  D  V+  S G K RL
Sbjct: 102 RENIYLNGRLLG---LSRKEIDEKIDEIIEFSELG-------DFIDLPVKTYSSGMKARL 151

Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
           + A      P ++  DE     DA   EK    LR+L + G TVI   H P 
Sbjct: 152 AFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS 203

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 12/200 (6%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQL 58
           +GP+G GK+TLL  L+ +LM     H  L G   +    S   A +   + Q       +
Sbjct: 39  IGPNGCGKSTLLRTLS-RLMTPAHGHVWLDGE-HIQHYASKEVARRIGLLAQNATTPGDI 96

Query: 59  TVRETLSLAAELQLPEILSVEERDE-YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           TV+E ++       P      + DE  V   +   G+   AD +V       +SGG+++R
Sbjct: 97  TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDT-----LSGGQRQR 151

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFK 176
             +A  L    +++  DEPTT LD      ++E L +L ++ G+T+   +H    +  + 
Sbjct: 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYA 211

Query: 177 FDDIVLLTEGKLVYAGPARD 196
              ++ L EGK+V  G  ++
Sbjct: 212 -SHLIALREGKIVAQGAPKE 230

Length = 265

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 54/198 (27%), Positives = 81/198 (40%), Gaps = 50/198 (25%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           G SG GK+TL  ++ G    +     SG +   GK  +                      
Sbjct: 46  GESGCGKSTLGRLILGLEEPT-----SGEILFEGKDITK--------------------- 79

Query: 62  ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA 121
                         LS EER E V  LL K+GL               +SGG+++R+ +A
Sbjct: 80  --------------LSKEERRERVLELLEKVGL----PEEFLYRYPHELSGGQRQRIGIA 121

Query: 122 CELIASPSVIYADEPTTGLDA-FQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKF-D 178
             L  +P +I ADEP + LD   QA +++  L+ L ++ G T +   H    SV     D
Sbjct: 122 RALALNPKLIVADEPVSALDVSVQA-QILNLLKDLQEELGLTYLFISHDL--SVVRYISD 178

Query: 179 DIVLLTEGKLVYAGPARD 196
            I ++  GK+V  GP  +
Sbjct: 179 RIAVMYLGKIVEIGPTEE 196

Length = 268

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 17/208 (8%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP----SSNKAYKFA-YVRQEDLFFS 56
           GPSGSGK+TL  +L G          SG + ++G         +  +   Y+ Q+   F 
Sbjct: 369 GPSGSGKSTLARLLVGIWPP-----TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD 423

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
             T+ E ++   E   PE +    R   V+ L+  L L    D+ +G+     +SGG+++
Sbjct: 424 G-TIAENIARFGEEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGEGG-ATLSGGQRQ 479

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           R++LA  L   P ++  DEP + LD+     +  A+      G TV+   H+P  S    
Sbjct: 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRP--SALAS 537

Query: 177 FDDIVLLTEGKLVYAGPARDEPLAYFSR 204
            D I++L +G++   GP R+E LA   R
Sbjct: 538 VDKILVLQDGRIAAFGP-REEVLAKVLR 564

Length = 580

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 21/204 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NKAYKFAYVRQEDLFF--- 55
           +G SG+GK+TL+  +   L+  P    SG + V+G+  +  + +      RQ  + F   
Sbjct: 37  IGASGAGKSTLIRCV--NLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHF 91

Query: 56  ---SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
              S  TV   ++L  EL   +    +E    V  LL  +GL      +  D+    +SG
Sbjct: 92  NLLSSRTVFGNVALPLEL---DNTPKDEIKRKVTELLALVGL-----GDKHDSYPSNLSG 143

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
           G+K+R+++A  L ++P V+  DE T+ LD    + ++E L+++ +     I  I      
Sbjct: 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV 203

Query: 173 VYFKFDDIVLLTEGKLVYAGPARD 196
           V    D + +++ G+L+  G   +
Sbjct: 204 VKRICDCVAVISNGELIEQGTVSE 227

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 59/208 (28%), Positives = 92/208 (44%), Gaps = 30/208 (14%)

Query: 1   MGPSGSGKTTLLNVLAGQLMAS--PRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFFSQ 57
           +GPSG GK+TLL  L    M    P   + G + ++GK   +       +R+   + F +
Sbjct: 39  IGPSGCGKSTLLRCL--NRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQK 96

Query: 58  -----LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGD---AKVRG 109
                +++ + ++    L    I   +E DE V S L K  L    D  V D       G
Sbjct: 97  PNPFPMSIYDNVAYGLRLH--GIKD-KELDEIVESSLKKAAL---WDE-VKDRLHKSALG 149

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           +SGG+++RL +A  L   P V+  DEPT+ LD     K+ E + +L +  +T++   H  
Sbjct: 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKK-YTIVIVTHNM 208

Query: 170 ----RGSVYFKFDDIVLLTEGKLVYAGP 193
               R S     D       G+LV  GP
Sbjct: 209 QQAARVS-----DYTAFFYLGELVEFGP 231

Length = 253

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 30/173 (17%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDL------- 53
           +G +G+GKTTLL  L G   A+     SG +  +GK  ++  ++ A + +E +       
Sbjct: 37  IGANGAGKTTLLGTLCGDPRAT-----SGRIVFDGKDITD--WQTAKIMREAVAIVPEGR 89

Query: 54  -FFSQLTVRETLSLA---AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRG 109
             FS++TV E L++    AE         +ER ++V  L  +L      +  +  A    
Sbjct: 90  RVFSRMTVEENLAMGGFFAERD-----QFQERIKWVYELFPRL-----HERRIQRAGT-- 137

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTV 162
           +SGGE++ L++   L++ P ++  DEP+ GL     +++ + + QL + G T+
Sbjct: 138 MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTI 190

Length = 237

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 24/223 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQ-- 57
           +GPSG GK+TLL          P   ++G +  NG+    + A   A  R+  + F +  
Sbjct: 38  IGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97

Query: 58  ---LTVRETLSLAAELQLPEILSVEER---DEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
               ++ E ++       P I   + +   D  V   L    L       + D+ +  +S
Sbjct: 98  PFPKSIYENVAYG-----PRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSAL-SLS 151

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ--- 168
           GG+++RL +A  L  +P VI  DEP + LD     K+ + +  L ++ +TVI   H    
Sbjct: 152 GGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKE-YTVIIVTHNMQQ 210

Query: 169 -PRGSVYFKF---DDIVLLTEGKLVYAGPARDEPLAYFS-RFG 206
             R S Y  F     ++   +   ++  P  +    Y + RFG
Sbjct: 211 AARVSDYTGFMYLGKLIEFDKTTQIFENPHEELTENYITGRFG 253

Length = 253

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 45/204 (22%), Positives = 94/204 (46%), Gaps = 26/204 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE--------DL 53
           G +GSGK+T+  ++ G          SG +  N +  ++    F  +R+         D 
Sbjct: 42  GHNGSGKSTIAKLMIGIEKVK-----SGEIFYNNQAITDD--NFEKLRKHIGIVFQNPDN 94

Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
            F    V+  ++   E      +  +E    V+  L ++ ++  AD      +   +SGG
Sbjct: 95  QFVGSIVKYDVAFGLENHA---VPYDEMHRRVSEALKQVDMLERADY-----EPNALSGG 146

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI-HQPRGS 172
           +K+R+++A  L  +PSVI  DE T+ LD    + +++ +R++  + +  I SI H    +
Sbjct: 147 QKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEA 206

Query: 173 VYFKFDDIVLLTEGKLVYAGPARD 196
           +  + D ++++ +G +   G   +
Sbjct: 207 M--EADHVIVMNKGTVYKEGTPTE 228

Length = 269

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 53.3 bits (128), Expect = 3e-07
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 110 ISGGEKKRLSLACELIAS---PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
           +SGGE +RL LA EL+A    P++   DEPTTGL     + ++  L+ L   GHTV+   
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIE 869

Query: 167 H 167
           H
Sbjct: 870 H 870

Length = 1809

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 24/200 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-----KFAYVRQE-DLFF 55
           G +GSGK+TL  +L G L+       +G + V G   S +       +   V Q  D  F
Sbjct: 40  GHNGSGKSTLAKLLNGLLLPE-----AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQF 94

Query: 56  SQLTVRETLSLAAELQ-LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
              TV++ ++   E   +P     EE  E V+  L ++G+    +      +   +SGG+
Sbjct: 95  VGATVQDDVAFGLENIGVPR----EEMVERVDQALRQVGMEDFLNR-----EPHRLSGGQ 145

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIHQPRGSV 173
           K+R+++A  L   P +I  DE T+ LD     +V+E +RQL  Q G TV+   H    + 
Sbjct: 146 KQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA 205

Query: 174 YFKFDDIVLLTEGKLVYAGP 193
             + D ++++ +G+++  G 
Sbjct: 206 --QADRVIVMNKGEILEEGT 223

Length = 279

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 62/214 (28%), Positives = 97/214 (45%), Gaps = 57/214 (26%)

Query: 2   GPSGSGKTTLLN-----VLAGQLMASPRL-----------HLSGLLEVN----GK-PSSN 40
           G SGSGK++L+N      LA +L                 H+  ++ ++    G+ P SN
Sbjct: 28  GVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87

Query: 41  KA-YK--FAYVRQEDLFFSQLT----VRETL-------SLAAELQLPEILSVEERDEY-- 84
            A Y   F  +R  +LF          RETL       S+A  L +    +VEE  E+  
Sbjct: 88  PATYTGVFDEIR--ELFCEVCKGKRYNRETLEVRYKGKSIADVLDM----TVEEALEFFE 141

Query: 85  -VNSLLFKLGLVSCADSNVGDAKVR------GISGGEKKRLSLACEL--IASPSVIYA-D 134
            +  +  KL  +     +VG   ++       +SGGE +R+ LA EL   ++   +Y  D
Sbjct: 142 NIPKIARKLQTLC----DVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILD 197

Query: 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           EPTTGL     +K++E L++L   G+TV+   H 
Sbjct: 198 EPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 34/178 (19%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVR----------- 49
           MG +G+GK+TLL +L+G          +G + ++G+       +FA              
Sbjct: 36  MGENGAGKSTLLKILSGNYQPD-----AGSILIDGQE-----MRFASTTAALAAGVAIIY 85

Query: 50  QEDLFFSQLTVRETLSLAAELQLPE---ILSVEERDEYVNSLLFKLGLVSCADSNVG-DA 105
           QE     ++TV E L L    QLP    I++    +      L  LG+      ++  D 
Sbjct: 86  QELHLVPEMTVAENLYLG---QLPHKGGIVNRRLLNYEAREQLEHLGV------DIDPDT 136

Query: 106 KVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
            ++ +S G+++ + +A  L  +  VI  DEPT+ L A + E++   +R+L  +G  ++
Sbjct: 137 PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVIL 194

Length = 501

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           +SGG+++RL +A  +   P VI  DEP + LD     K+ + + +LA++ +TV+   H  
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM 239

Query: 170 RGSVYFKFDDIVLLTEGKLV 189
           + +        V LT G+LV
Sbjct: 240 QQAARISDKTAVFLTGGELV 259

Length = 285

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 14/146 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLF---FSQ 57
           +G +GSGK+TL  +LAG  M  P    SG L ++  P     Y +   R   +F    + 
Sbjct: 45  IGENGSGKSTLAKMLAG--MIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTS 99

Query: 58  LTVRETLS--LAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
           L  R+ +S  L   L+L   L  E+R++ +   L ++GL+    S         ++ G+K
Sbjct: 100 LNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHM----LAPGQK 155

Query: 116 KRLSLACELIASPSVIYADEPTTGLD 141
           +RL LA  LI  P VI ADE    LD
Sbjct: 156 QRLGLARALILRPKVIIADEALASLD 181

Length = 267

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.7 bits (121), Expect = 6e-07
 Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 18/220 (8%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFFSQ-- 57
           +GPSG GK+T L  L       P + ++G + + G+           +R++  + F Q  
Sbjct: 37  IGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96

Query: 58  ---LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
               ++ E +     L+L  +      DE V + L +  +      ++ ++ +  +SGG+
Sbjct: 97  PFPFSIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESAL-SLSGGQ 153

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVIC---SIHQPR- 170
           ++R+ +A  L   P VI  DEPT+ LD   + ++   L +L +D +T+I    S+HQ   
Sbjct: 154 QQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL-RDQYTIILVTHSMHQASR 212

Query: 171 ---GSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFS-RFG 206
               + +F   +++   + K ++  P   E   Y + RFG
Sbjct: 213 ISDKTAFFLTGNLIEFADTKQMFLNPKEKETEDYITGRFG 252

Length = 252

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 24/164 (14%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYK--FAYVRQEDLFFS 56
           GPSG GK+TLL ++A  +  SP    SG L   G+  S    + Y+   +Y  Q    F 
Sbjct: 40  GPSGCGKSTLLKIVASLI--SPT---SGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG 94

Query: 57  QLTVRETLSLAAEL--QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
             TV + L    ++  Q P+         +++ L  +  L       +    +  +SGGE
Sbjct: 95  D-TVYDNLIFPWQIRNQQPD------PAIFLDDLE-RFAL----PDTILTKNIAELSGGE 142

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158
           K+R+SL   L   P V+  DE T+ LD      V E + +  ++
Sbjct: 143 KQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE 186

Length = 225

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.8 bits (121), Expect = 6e-07
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 16/176 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQ--- 57
           +GPSG GK+T L  L         + + G +   GK   +  +    +R++     Q   
Sbjct: 39  IGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN 98

Query: 58  ---LTVRETLSLAAELQLPEILSVEER---DEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
              +++ + +S       P+I   +++   DE V   L K  L +     + +     +S
Sbjct: 99  PFLMSIYDNISYG-----PKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKL-NTNALSLS 152

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           GG+++RL +A  L   P+VI  DEPT+ LD     K+ E +  L ++ +T+I   H
Sbjct: 153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTH 207

Length = 254

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 21/205 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFFS--- 56
           +G +GSGK+TL+  L G L  +     SG + ++G   ++K  K + +R++  L F    
Sbjct: 39  IGHTGSGKSTLIQHLNGLLKPT-----SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPE 93

Query: 57  -QL---TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
            QL   T+ + ++       P  L + E +E  N +   + +V     +  D     +SG
Sbjct: 94  YQLFEETIEKDIAFG-----PINLGLSE-EEIENRVKRAMNIVGLDYEDYKDKSPFELSG 147

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRG 171
           G+K+R+++A  +   P ++  DEPT GLD    ++++  +++L ++   T+I   H    
Sbjct: 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMED 207

Query: 172 SVYFKFDDIVLLTEGKLVYAGPARD 196
                 D I+++ +GK    G  R+
Sbjct: 208 VAKLA-DRIIVMNKGKCELQGTPRE 231

Length = 287

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 52.5 bits (126), Expect = 6e-07
 Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 38/205 (18%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +G +GSGK+TLL  L  Q   S      G   V  + S       AYV Q+    +  TV
Sbjct: 692 LGATGSGKSTLLQSLLSQFEIS-----EG--RVWAERS------IAYVPQQAWIMNA-TV 737

Query: 61  RETLSL-----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
           R  +       AA L     +S  E D      L +LG     ++ +G+  V  +SGG+K
Sbjct: 738 RGNILFFDEEDAARLADAVRVSQLEAD------LAQLG--GGLETEIGEKGV-NLSGGQK 788

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ----PRG 171
            R+SLA  + A+  V   D+P + LDA   E+V+E     A  G T + + HQ    PR 
Sbjct: 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRA 848

Query: 172 SVYFKFDDIVLLTEGKLVYAGPARD 196
                 D +V L +G++ ++G + D
Sbjct: 849 ------DYVVALGDGRVEFSGSSAD 867

Length = 1560

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 26/224 (11%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVR-------QEDL 53
           +GPSG GK+T +  L   +   P + L+G +  NG            +R       Q+  
Sbjct: 44  IGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103

Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGD---AKVRGI 110
            F Q ++ + ++       P I   + + +    +   L  V+  D  V D    +   +
Sbjct: 104 PFPQ-SIFDNVAYG-----PRIHGTKNKKKLQEIVEKSLKDVALWDE-VKDRLHTQALSL 156

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
           SGG+++RL +A  L  +P V+  DEPT+ LD     K+ E + +L ++ +T++   H  +
Sbjct: 157 SGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL-KEKYTIVIVTHNMQ 215

Query: 171 G-------SVYFKFDDIVLLTEGKLVYAGPARDEPLAYFS-RFG 206
                   + +F   ++V   +   +++ P     L Y + +FG
Sbjct: 216 QAARVSDQTAFFYMGELVECNDTNKMFSNPDDQRTLDYITGKFG 259

Length = 259

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 49.0 bits (118), Expect = 8e-07
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 100 SNVGDAKVRGI------SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153
           ++  DA+  GI      S GE++ + +A  L  +  ++  DEPT  L   + E++ + +R
Sbjct: 67  ASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIR 126

Query: 154 QLAQDGHTVI 163
           +L   G  VI
Sbjct: 127 RLRAQGVAVI 136

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 31/197 (15%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDL-FFSQLT 59
           +G +G+GK+TLL ++AG    +     SG ++V GK +         + +    F  +LT
Sbjct: 59  IGHNGAGKSTLLKLIAGIYKPT-----SGKVKVTGKVA--------PLIELGAGFDPELT 105

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLL-FKLGLVSCADSNVG---DAKVRGISGGEK 115
            RE + L     L   L+ +E DE V+ ++ F         + +G   D  V+  S G  
Sbjct: 106 GRENIYL---RGLILGLTRKEIDEKVDEIIEF---------AELGDFIDQPVKTYSSGMY 153

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
            RL+ +      P ++  DE     DA   EK +E L +L +   T++   H   G++  
Sbjct: 154 ARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQ 212

Query: 176 KFDDIVLLTEGKLVYAG 192
             D  + L  G++   G
Sbjct: 213 YCDRAIWLEHGQIRMEG 229

Length = 249

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 21/221 (9%)

Query: 1   MGPSGSGKTTLLNVL--AGQLMASPRLHLSGLLEVNGK------PSSNKAYKFAYVRQED 52
           +GPSG GK+TLL  L     L+    + ++G L ++G+        ++   K   V Q+ 
Sbjct: 35  IGPSGCGKSTLLRCLNRMNDLIEG--VKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKP 92

Query: 53  LFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
             F  +++ E ++     Q   I   +  DE V   L    L       +  +   G+SG
Sbjct: 93  NPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSG 148

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVIC--SIHQPR 170
           G+++RL +A  +   P VI  DEPT+ LD     K+ E + +L ++   VI   S+ Q R
Sbjct: 149 GQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQAR 208

Query: 171 ----GSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFS-RFG 206
                + +F   ++V   + +++++ P  D    Y +  FG
Sbjct: 209 RISDRTAFFLMGELVEHDDTQVIFSNPKDDRTQGYVNGDFG 249

Length = 249

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 43/214 (20%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFF---- 55
           G SGSGK+TL   L   L+ S      G +  +G+     + K      R+  + F    
Sbjct: 320 GESGSGKSTLGLALLR-LIPS-----QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY 373

Query: 56  SQLTVRETLS-LAAE-LQLPE-ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
             L+ R T+  +  E L++ E  LS  ERD+ V   L ++GL    D    +      SG
Sbjct: 374 GSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGL----DPATRNRYPHEFSG 429

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGH----------- 160
           G+++R+++A  LI  P +I  DEPT+ LD + QA+ V++ LR L Q  H           
Sbjct: 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQ-VLDLLRDL-QQKHGLSYLFISHDL 487

Query: 161 TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA 194
            V+ ++             ++++ +GK+V  GP 
Sbjct: 488 AVVRALC----------HRVIVMRDGKIVEQGPT 511

Length = 534

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 25/224 (11%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK----PSSNKAYKFAYVRQEDLFFS 56
           +GPSG GKTT L  +      +P   ++G + ++G+    P  +     A  R+  + F 
Sbjct: 36  IGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV---AMRRRVGMVFQ 92

Query: 57  QLTVRETLSL----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGD---AKVRG 109
           +     T+S+     A L+L     + +RD  +      L   +  D  V D       G
Sbjct: 93  KPNPFPTMSVFDNVVAGLKLA---GIRDRDHLMEVAERSLRGAALWDE-VKDRLKTPATG 148

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICS--IH 167
           +SGG+++RL +A  L   P ++  DEPT+ LD     ++ + +  L +    +I +  +H
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH 208

Query: 168 QPR----GSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFS-RFG 206
           Q       + +F   D+V       ++  P  +   AY S RFG
Sbjct: 209 QAARVSDTTSFFLVGDLVEHGPTDQLFTNPRDERTEAYVSGRFG 252

Length = 252

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 8/96 (8%)

Query: 99  DSNVGDAKVRG--ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156
           D+ VG+   RG  +SGGEK+R+++A  ++ +P ++  DE T+ LD    + +  ALR+++
Sbjct: 390 DTGVGE---RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS 446

Query: 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192
             G T +   H  R S     D+I++L  G++V  G
Sbjct: 447 -AGRTTLVIAH--RLSTIIDADEIIVLDNGRIVERG 479

Length = 497

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 42/164 (25%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLF 54
           +GP+G GKTT + +LAG +                KP          +YK  Y+  +   
Sbjct: 373 LGPNGIGKTTFVKLLAGVI----------------KPDEGSEEDLKVSYKPQYISPD--- 413

Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFK-LGLVSCADSNVGDAKVRGISGG 113
               TV + L  A                Y  + + K L L    +       V  +SGG
Sbjct: 414 -YDGTVEDLLRSAIRSAFG--------SSYFKTEIVKPLNLEDLLERP-----VDELSGG 459

Query: 114 EKKRLSLACELIASPSVIYA-DEPTTGLDAFQAEKVMEALRQLA 156
           E +R+++A  L +  + +Y  DEP+  LD  Q   V + +R+  
Sbjct: 460 ELQRVAIAAAL-SREADLYLLDEPSAYLDVEQRIIVAKVIRRFI 502

Length = 591

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 49/193 (25%), Positives = 96/193 (49%), Gaps = 16/193 (8%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKFAYVR-QEDLFFSQLT 59
           G SG+GK+TLL ++ G    S     +G +  +G   +  K  +  ++R Q  + F    
Sbjct: 35  GHSGAGKSTLLKLICGIERPS-----AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHH 89

Query: 60  VRETLSLAAELQLPEIL---SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
           +    ++   + +P I+   S ++    V++ L K+GL+  A +         +SGGE++
Sbjct: 90  LLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQ-----LSGGEQQ 144

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           R+ +A  ++  P+V+ ADEPT  LD   +E ++    +  + G TV+ + H   G +  +
Sbjct: 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHD-IGLISRR 203

Query: 177 FDDIVLLTEGKLV 189
              ++ L++G L 
Sbjct: 204 SYRMLTLSDGHLH 216

Length = 222

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 24/196 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-----KFAYVRQEDLFFS 56
           G +GSGK++LL  L   +  S     SG + ++G   S         + + + Q+ + FS
Sbjct: 37  GRTGSGKSSLLLALFRLVELS-----SGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS 91

Query: 57  QLTVRETLSLAAELQLPEILSVEER---DEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
             T+R  L    E    E+    ER    E+V SL   L  V              +S G
Sbjct: 92  G-TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGE-------NLSVG 143

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
           +++ L LA  L+    ++  DE T  +D      + + +R+ A    TV+   H  R   
Sbjct: 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAH--RLDT 200

Query: 174 YFKFDDIVLLTEGKLV 189
               D I++L +G++V
Sbjct: 201 IIDSDRILVLDKGRVV 216

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 26/94 (27%), Positives = 48/94 (51%)

Query: 99  DSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158
           D    D   R  SGG ++RL +A  L+  P +++ DEPT GLD     ++++ LR L +D
Sbjct: 138 DPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD 197

Query: 159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192
               +  +    G        ++++ +G++V +G
Sbjct: 198 LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 109 GISGGEKKRLSLA-----CELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
            +SGGEK+  +LA       L   P  I  DE   GLD    + + EA+ +    G  VI
Sbjct: 77  QLSGGEKELSALALILALASLKPRPLYIL-DEIDRGLDPRDGQALAEAILEHLVKGAQVI 135

Query: 164 CSIHQP 169
              H P
Sbjct: 136 VITHLP 141

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           G+SGG+++RL +A  L   P V+  DEPT+ LD     K+ E +++L +D +T++   H
Sbjct: 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKD-YTIVIVTH 203

Length = 250

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 34/156 (21%)

Query: 1   MGPSGSGKTTLLNVLAGQLMAS-----------PRLHLSGLLEVNGKPSSNKAYKFAYVR 49
           MGPSG GKTTLL ++ GQ+              P +  S L  V  + S         + 
Sbjct: 39  MGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMS--------MLF 90

Query: 50  QEDLFFSQLTVRETLS--LAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKV 107
           Q    F+ + V + ++  L    QLP  L         ++++ KL  V       G AK+
Sbjct: 91  QSGALFTDMNVFDNVAYPLREHTQLPAPL-------LHSTVMMKLEAVGLR----GAAKL 139

Query: 108 R--GISGGEKKRLSLACELIASPSVIYADEPTTGLD 141
               +SGG  +R +LA  +   P +I  DEP  G D
Sbjct: 140 MPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175

Length = 269

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 49.4 bits (118), Expect = 4e-06
 Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 29/209 (13%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVN-----------GKPSSNKAYKF-AYV 48
           +G SG+GKTTL  ++AG L  +     SG + V            G     +A ++   +
Sbjct: 316 VGTSGAGKTTLSKIIAGVLEPT-----SGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGIL 370

Query: 49  RQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
            QE   +   TV + L+ A  L+LP+ L+   +       L  +G        + D    
Sbjct: 371 HQEYDLYPHRTVLDNLTEAIGLELPDELARM-KAVIT---LKMVGFDEEKAEEILDKYPD 426

Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQ----AEKVMEALRQLAQDGHTVIC 164
            +S GE+ R++LA  LI  P ++  DEPT  +D          +++A  ++ Q   T I 
Sbjct: 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ---TFII 483

Query: 165 SIHQPRGSVYFKFDDIVLLTEGKLVYAGP 193
             H     V    D   L+ +GK+V  G 
Sbjct: 484 VSHD-MDFVLDVCDRAALMRDGKIVKIGD 511

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 49.3 bits (119), Expect = 4e-06
 Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 50/174 (28%)

Query: 2   GPSGSGKTTLLNVLAG--QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           G +G+GK+TLL ++AG  +             E  G+       K  Y+ QE     + T
Sbjct: 40  GLNGAGKSTLLRIMAGVDK-------------EFEGEARPAPGIKVGYLPQEPQLDPEKT 86

Query: 60  VRETLSLAAELQLPEILSVEER-----------DEYVNSLLFKLGLVSCA---------D 99
           VRE +    E  + E+ +  +R           D   ++L  + G +            D
Sbjct: 87  VRENV----EEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLD 142

Query: 100 SNV-----------GDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDA 142
           S +            DAKV  +SGGE++R++L   L+  P ++  DEPT  LDA
Sbjct: 143 SQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDA 196

Length = 556

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 13/201 (6%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFF---- 55
           +G +GSGK+TLL  L G L  +      G + V+   S++K  +   VR++  + F    
Sbjct: 38  IGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVS---STSKQKEIKPVRKKVGVVFQFPE 94

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
           SQL     L   A       +  E+ ++     L  +GL         +     +SGG+ 
Sbjct: 95  SQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGL----ADEFWEKSPFELSGGQM 150

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
           +R+++A  L   P V+  DEPT GLD     ++M+    + Q G TV+   H       +
Sbjct: 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADY 210

Query: 176 KFDDIVLLTEGKLVYAGPARD 196
             D + LL +G ++  G   D
Sbjct: 211 A-DYVYLLEKGHIISCGTPSD 230

Length = 288

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 48/196 (24%), Positives = 74/196 (37%), Gaps = 56/196 (28%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK------------------------ 36
           +GPSG GK+T +  L       P     G + ++G                         
Sbjct: 35  IGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94

Query: 37  --PSS---NKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFK 91
             P S   N AY      ++D  F +  V E+L  AA             DE  + L   
Sbjct: 95  PFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALW-----------DEVKDKL--- 140

Query: 92  LGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151
                       D    G+SGG+++RL +A  +  SP VI  DEP + LD     K+ + 
Sbjct: 141 ------------DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL 188

Query: 152 LRQLAQDGHTVICSIH 167
           + +L +D +T++   H
Sbjct: 189 IHKLKED-YTIVIVTH 203

Length = 250

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 28/206 (13%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS---SNKAY--KFAYVRQEDLFF 55
           +G +GSGK+TLL +L      S      G + ++ +P    S+KA+  K AY+ Q+    
Sbjct: 43  IGHNGSGKSTLLKMLGRHQPPS-----EGEILLDAQPLESWSSKAFARKVAYLPQQLPAA 97

Query: 56  SQLTVRETLSLAAELQLP-----EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
             +TVRE   L A  + P           +R E V   +  +GL   A        V  +
Sbjct: 98  EGMTVRE---LVAIGRYPWHGALGRFGAADR-EKVEEAISLVGLKPLAHR-----LVDSL 148

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQD-GHTVICSIHQ 168
           SGGE++R  +A  +      +  DEPT+ LD A Q + V+  + +L+Q+ G TVI  +H 
Sbjct: 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVD-VLALVHRLSQERGLTVIAVLHD 207

Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPA 194
              +  +  D +V L  G+++  G  
Sbjct: 208 INMAARY-CDYLVALRGGEMIAQGTP 232

Length = 265

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 12/143 (8%)

Query: 2   GPSGSGKTTLLNVLAG-QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           GPSG GK+TLL ++AG + + S  L +     +N  P + +      V Q    +  L+V
Sbjct: 36  GPSGCGKSTLLRMIAGLEDITSGDLFIGEKR-MNDVPPAERG--VGMVFQSYALYPHLSV 92

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
            E +S    L+L      EE ++ VN +   L L     +++ D K + +SGG+++R+++
Sbjct: 93  AENMSFG--LKLAGA-KKEEINQRVNQVAEVLQL-----AHLLDRKPKALSGGQRQRVAI 144

Query: 121 ACELIASPSVIYADEPTTGLDAF 143
              L+A PSV   DEP + LDA 
Sbjct: 145 GRTLVAEPSVFLLDEPLSNLDAA 167

Length = 369

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 47.4 bits (112), Expect = 7e-06
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 104 DAKVRGISGGEKKRLSLACELIA---SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160
              ++GIS G K+ L+L   L++     S++  DEP  GL      K++E L++L++ G 
Sbjct: 184 KLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGA 243

Query: 161 TVICSIHQP 169
            +I + H P
Sbjct: 244 QLIFTTHSP 252

Length = 256

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.3 bits (112), Expect = 8e-06
 Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 9/161 (5%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFFSQ-- 57
           +GPSG GK+T +  L         + + G+++  G+   +       +R++  + F +  
Sbjct: 39  IGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98

Query: 58  ---LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
              +++ E  ++A  +++   L   + DE V S L    L       + +    G+SGG+
Sbjct: 99  PFPMSIYE--NVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKL-NKSALGLSGGQ 155

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155
           ++RL +A  L   P V+  DEP + LD     KV E +  L
Sbjct: 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL 196

Length = 259

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 29/86 (33%), Positives = 48/86 (55%)

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
           SGG ++R+ +A  L+  P ++ ADEPTT LD     ++M  L +L ++ +T I  I    
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL 222

Query: 171 GSVYFKFDDIVLLTEGKLVYAGPARD 196
           G V    D ++++  G+ +  G ARD
Sbjct: 223 GVVAGICDKVLVMYAGRTMEYGNARD 248

Length = 330

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 36/159 (22%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFFSQLTV 60
           GP+G+GK+TL  ++ GQ    P    SG +++       +  K AYV Q  D      TV
Sbjct: 355 GPNGAGKSTLFRMITGQ--EQPD---SGTIKIG------ETVKLAYVDQSRDALDPNKTV 403

Query: 61  RETLSLAAELQLPEILSVEERD----EYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
            E +S   +     I+ + +R+     YV    FK G    +D      KV  +SGGE+ 
Sbjct: 404 WEEISGGLD-----IIQLGKREVPSRAYVGRFNFK-G----SDQQ---KKVGQLSGGERN 450

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155
           R+ LA  L +  +V+  DEPT  LD       +E LR L
Sbjct: 451 RVHLAKTLKSGGNVLLLDEPTNDLD-------VETLRAL 482

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 47.9 bits (115), Expect = 1e-05
 Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 42/164 (25%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDL 53
           +GP+G GKTT   +LAG L                KP   +       +YK  Y++ +  
Sbjct: 371 VGPNGIGKTTFAKLLAGVL----------------KPDEGEVDPELKISYKPQYIKPD-- 412

Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFK-LGLVSCADSNVGDAKVRGISG 112
                TV + L       + + L       Y  S + K L L    D NV D     +SG
Sbjct: 413 --YDGTVEDLLR-----SITDDLG----SSYYKSEIIKPLQLERLLDKNVKD-----LSG 456

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156
           GE +R+++A  L     +   DEP+  LD  Q   V +A+R++A
Sbjct: 457 GELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIA 500

Length = 590

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 18/177 (10%)

Query: 1   MGPSGSGKTTLLNVL--AGQLMASPRLHLSGLLEVNGKPSSNKAY-----KFAYVRQEDL 53
           +GPSG GK+TLL  L     +++  RL  + LL+     S N        +   V Q+  
Sbjct: 36  IGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95

Query: 54  FFSQLTVRETLSLAAELQLPEILSVEER---DEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
            F + ++ + ++       P +L    +   DE V   L +  L      N+  + +  +
Sbjct: 96  PFPK-SIFDNVAFG-----PRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL-AL 148

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           SGG+++RL +A  L   P VI  DEP + LD     ++ E +++L Q+ +T+    H
Sbjct: 149 SGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQN-YTIAIVTH 204

Length = 251

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 18/176 (10%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVR-------QEDLF 54
           GPSG GK+TLL          P     G + ++G+         A +R       Q+   
Sbjct: 46  GPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTP 105

Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGD---AKVRGIS 111
           F  +++ + ++    ++L E LS  E DE V   L K  L +     V D        +S
Sbjct: 106 FP-MSIYDNIAFG--VRLFEKLSRAEMDERVEWALTKAALWN----EVKDKLHQSGYSLS 158

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           GG+++RL +A  +   P V+  DEP + LD     ++ E + +L QD +TV+   H
Sbjct: 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQD-YTVVIVTH 213

Length = 260

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 2/88 (2%)

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQ 168
           +SGG+ +R+++A  L   P V+  DEPT GLD    +++ME   +L ++ G T +   H 
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205

Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD 196
              +  +  D IV++ +G +   G  R+
Sbjct: 206 MEDAARYA-DQIVVMHKGTVFLQGTPRE 232

Length = 290

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 111 SGGEKKRLSLACELIASPS--VIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           SGGE +R+ LA EL    +   +Y  DEPTTGL     +K++E L +L   G+TVI
Sbjct: 824 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVI 879

Length = 935

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 61/224 (27%)

Query: 2   GPSGSGKTT----LLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFF 55
           G SGSGK+T    LL ++  Q          G +  +G+P  N   +       +  + F
Sbjct: 319 GESGSGKSTTGLALLRLINSQ----------GEIWFDGQPLHNLNRRQLLPVRHRIQVVF 368

Query: 56  S--------QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKV 107
                    +L V + +     +  P  LS  +R++ V +++ ++GL         D + 
Sbjct: 369 QDPNSSLNPRLNVLQIIEEGLRVHQPT-LSAAQREQQVIAVMEEVGL---------DPET 418

Query: 108 R-----GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ----- 157
           R       SGG+++R+++A  LI  PS+I  DEPT+ LD     +++  L+ L Q     
Sbjct: 419 RHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLA 478

Query: 158 ------DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPAR 195
                 D H V    HQ           +++L +G++V  G   
Sbjct: 479 YLFISHDLHVVRALCHQ-----------VIVLRQGEVVEQGDCE 511

Length = 529

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 30/144 (20%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQ--- 57
           +GP+G+GK+TL+ V+ G +         G+++ NGK       +  YV Q+ L+      
Sbjct: 36  LGPNGAGKSTLVRVVLGLVAPD-----EGVIKRNGK------LRIGYVPQK-LYLDTTLP 83

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           LTV   L L    +  +IL   +R   V +             ++ DA ++ +SGGE +R
Sbjct: 84  LTVNRFLRLRPGTKKEDILPALKR---VQA------------GHLIDAPMQKLSGGETQR 128

Query: 118 LSLACELIASPSVIYADEPTTGLD 141
           + LA  L+  P ++  DEPT G+D
Sbjct: 129 VLLARALLNRPQLLVLDEPTQGVD 152

Length = 251

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 24/151 (15%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQE 51
           MG SGSGK+TL+ +L   +  +      G + V+GK  +          +  K + V Q 
Sbjct: 60  MGLSGSGKSTLVRLLNRLIEPT-----RGEILVDGKDIAKLSAAELRELRRKKISMVFQS 114

Query: 52  DLFFSQLTVRETLSLAAELQ-LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
                  TV E ++   E+Q +P+     ER+E     L  +GL   AD          +
Sbjct: 115 FALLPHRTVLENVAFGLEVQGVPK----AEREERALEALELVGLEGYADK-----YPNEL 165

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLD 141
           SGG ++R+ LA  L   P ++  DE  + LD
Sbjct: 166 SGGMQQRVGLARALANDPDILLMDEAFSALD 196

Length = 386

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 42/177 (23%), Positives = 85/177 (48%), Gaps = 17/177 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMA-SPRLHLSGLLEVNGKPSSNKA---YKFAYVRQEDLFFS 56
           +G  G GK++LL  + G++     ++H S   E      + ++   Y  AY  Q+    +
Sbjct: 33  VGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLN 92

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCAD-SNVGDAKVRGI--SGG 113
             TV E ++  +        +V +      SL   + L+   D + +G+   RGI  SGG
Sbjct: 93  A-TVEENITFGSPFNKQRYKAVTD----ACSLQPDIDLLPFGDQTEIGE---RGINLSGG 144

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA--LRQLAQDGHTVICSIHQ 168
           +++R+ +A  L  + ++++ D+P + LD   ++ +M+   L+ L  D  T++   H+
Sbjct: 145 QRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHK 201

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 43/182 (23%)

Query: 2   GPSGSGKT-TLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQE 51
           G SGSGK+ T L++L   L + P ++ SG +  +G+   +         +  K A + QE
Sbjct: 42  GESGSGKSVTALSIL-RLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQE 100

Query: 52  DLFFSQLTVRETLSLAAELQLPEILSVEE-------RDEYVNSLLFKLGLVSCADSNVG- 103
            +    L    TL    E QL E+LS+         R E          +++C D  VG 
Sbjct: 101 PM--VSLNPLHTL----EKQLYEVLSLHRGMRREAARGE----------ILNCLD-RVGI 143

Query: 104 -DAKVR------GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156
             A  R       +SGGE++R+ +A  L+  P ++ ADEPTT LD     ++++ LR+L 
Sbjct: 144 RQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQ 203

Query: 157 QD 158
           Q+
Sbjct: 204 QE 205

Length = 529

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 16/158 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMA-SPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +GPSG GKTT+L ++AG     S R+ L G  ++   P+ N+      V Q    F  +T
Sbjct: 46  LGPSGCGKTTVLRLIAGFETPDSGRIMLDG-QDITHVPAENR--HVNTVFQSYALFPHMT 102

Query: 60  VRETLSLAAELQ-LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
           V E ++    +Q  P      E    V   L  + L           K   +SGG+++R+
Sbjct: 103 VFENVAFGLRMQKTPA----AEITPRVMEALRMVQL-----EEFAQRKPHQLSGGQQQRV 153

Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEA-LRQL 155
           ++A  ++  P V+  DE  + LD ++  K M+  L+ L
Sbjct: 154 AIARAVVNKPKVLLLDESLSALD-YKLRKQMQNELKAL 190

Length = 375

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 26/157 (16%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +GP+G GKTT + +LAG L          L  V        +YK  Y++ +     + TV
Sbjct: 31  LGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV--------SYKPQYIKAD----YEGTV 78

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFK-LGLVSCADSNVGDAKVRGISGGEKKRLS 119
           R+ LS         I        Y  + + K L +    D  V +     +SGGE +R++
Sbjct: 79  RDLLS--------SITKDFYTHPYFKTEIAKPLQIEQILDREVPE-----LSGGELQRVA 125

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156
           +A  L     +   DEP+  LD  Q     + +R+ A
Sbjct: 126 IAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA 162

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 60/191 (31%), Positives = 88/191 (46%), Gaps = 32/191 (16%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +G +G+GK+TL+ +LAG+L             V+G+    K  K  Y  Q  L F  L  
Sbjct: 344 LGRNGAGKSTLIKLLAGELAP-----------VSGEIGLAKGIKLGYFAQHQLEF--LRA 390

Query: 61  RET-LSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
            E+ L   A L  P+ L  + RD Y+    F+          V +   R  SGGEK RL 
Sbjct: 391 DESPLQHLARLA-PQELEQKLRD-YLGGFGFQ-------GDKVTEETRR-FSGGEKARLV 440

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICS--IHQPRGSVYFKF 177
           LA  +   P+++  DEPT  LD    + + EAL     +G  V+ S   H  R +     
Sbjct: 441 LALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTT---- 494

Query: 178 DDIVLLTEGKL 188
           DD+ L+ +GK+
Sbjct: 495 DDLYLVHDGKV 505

Length = 638

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 16/176 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFFSQ-- 57
           +GPSG GK+T +  L   +   P +  +G +    +   +K+Y    +R    + F +  
Sbjct: 56  IGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN 115

Query: 58  ---LTVRETLSLAAELQLPEILSVEER---DEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
               ++ + ++       P+I  ++++   DE V   L    +       +      G+S
Sbjct: 116 PFPKSIYDNVTYG-----PKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLS 169

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           GG+++RL +A  L   P VI  DEPT+ LD     KV E +++L +D +++I   H
Sbjct: 170 GGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKD-YSIIIVTH 224

Length = 271

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 42/173 (24%), Positives = 81/173 (46%), Gaps = 28/173 (16%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP----SSNKAYKFAYVR--QEDLF 54
           +GP+G+GKTT+ N L G    +      G + + G+       ++  +   VR  Q    
Sbjct: 37  IGPNGAGKTTVFNCLTGFYKPT-----GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRL 91

Query: 55  FSQLTVRETLSLAAELQLPEIL------------SVEERDEYVNSLLFKLGLVSCADSNV 102
           F ++TV E L +A   QL   L            +  E  +   + L ++GL+  A+   
Sbjct: 92  FREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA 151

Query: 103 GDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155
           G+     ++ G+++RL +A  ++  P ++  DEP  GL+  + +++ E + +L
Sbjct: 152 GN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAEL 199

Length = 255

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 21/177 (11%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
            G SG+GKT+LL  LAG       L   G    +G+ S        ++ Q   +  Q T+
Sbjct: 425 TGESGAGKTSLLRALAG-------LWPWG----SGRISMPADSALLFLPQRP-YLPQGTL 472

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADS-NVGDAKVRGISGGEKKRLS 119
           RE L            S    D  + ++L K+GL   A+  +  D   R +SGGE++RL+
Sbjct: 473 REALCYP---NAAPDFS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLA 525

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
            A  L+  P  ++ DE T+ LD    +++ + L++   D  TVI   H+P    +  
Sbjct: 526 FARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDA-TVISVGHRPTLWNFHS 581

Length = 604

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 65/240 (27%), Positives = 96/240 (40%), Gaps = 49/240 (20%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVN-----------GKPSS----NKAYKF 45
           +G +GSGK+TL             LHL+GLL              G  S      K    
Sbjct: 34  IGKNGSGKSTL------------ALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81

Query: 46  AYVRQEDLFFSQLTVRETLSLAAE-LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGD 104
            +   E  F  + TV E L+   E L LP I    E  + V+  L ++GL          
Sbjct: 82  VFQNPETQFVGR-TVEEDLAFGPENLCLPPI----EIRKRVDRALAEIGL-----EKYRH 131

Query: 105 AKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVIC 164
              + +SGG+ + ++LA  L   P  +  DE T+ LD      V+E +++L + G T++ 
Sbjct: 132 RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVY 191

Query: 165 SIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFS-----RFGYTCPDHVNPAEFL 219
             H          D I+++  GK+V  G    EP    S       G T P  +  AE L
Sbjct: 192 ITHNLEE--LHDADRIIVMDRGKIVLEG----EPENVLSDVSLQTLGLTPPSLIELAENL 245

Length = 274

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIHQ 168
           +SGG+K+R+++A  L   P  I  DEPT  LD     +V+  +++L  + G T+I   H 
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY 204

Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD 196
              +V  + D I+++  GK+V  G  ++
Sbjct: 205 MEEAV--EADRIIVMDSGKVVMEGTPKE 230

Length = 280

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 104 DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           D   R  SGG ++RL +A  L+  P +++ DEPT GLD     ++++ LR L ++    +
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205

Query: 164 CSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192
             +           D ++++ +G++V +G
Sbjct: 206 VIVTHDLAVARLLADRLMVMKQGQVVESG 234

Length = 258

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           +SGG+K+R+++A  L  +P +I  DE T+ LD     ++ + +  L +     + SI   
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202

Query: 170 RGSVYFKFDDIVLLTEGKLVYAG 192
                   D +++ +EGKL+  G
Sbjct: 203 MDEA-ILADKVIVFSEGKLIAQG 224

Length = 271

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 46.2 bits (109), Expect = 5e-05
 Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 13/110 (11%)

Query: 45   FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEER----DEYVNSLLFKLGLVSCADS 100
            F+ V QE + F+ +++ E +    E    E +    +    DE++ SL  K       D+
Sbjct: 1298 FSIVSQEPMLFN-MSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKY------DT 1350

Query: 101  NVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150
            NVG    + +SGG+K+R+++A  L+  P ++  DE T+ LD+  +EK++E
Sbjct: 1351 NVGPYG-KSLSGGQKQRIAIARALLREPKILLLDEATSSLDS-NSEKLIE 1398

Length = 1466

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 110 ISGGEKKRLSLACELIA---SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           +SGGE +R+ LA EL       ++   DEPTTGL     +K++E L++L   G+TV+
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVV 886

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 29/203 (14%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-----KFAYVRQEDLFFS 56
           GP+GSGK+TLL+++      S      G +  +  P +         + A V Q    FS
Sbjct: 348 GPTGSGKSTLLSLIQRHFDVS-----EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS 402

Query: 57  QLTVRETLSL----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI-- 110
             TV   ++L    A + ++  +  +    + +      L L    D+ VG+   RG+  
Sbjct: 403 D-TVANNIALGRPDATQQEIEHVARLASVHDDI------LRLPQGYDTEVGE---RGVML 452

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
           SGG+K+R+S+A  L+ +  ++  D+  + +D     +++  LRQ  + G TVI S H  R
Sbjct: 453 SGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE-GRTVIISAH--R 509

Query: 171 GSVYFKFDDIVLLTEGKLVYAGP 193
            S   +  +I+++  G +   G 
Sbjct: 510 LSALTEASEILVMQHGHIAQRGN 532

Length = 569

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH- 167
           G+SGG+++RL +A  L   P V+  DEP + LD    +K+ E + +L    +T+I   H 
Sbjct: 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR-YTIIIVTHN 207

Query: 168 -QPRGSVYFKFDDIVLLTEGKLVYAGP 193
            Q    V    D       GKL+  GP
Sbjct: 208 MQQAARVS---DVTAFFYMGKLIEVGP 231

Length = 253

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 45.7 bits (108), Expect = 7e-05
 Identities = 51/196 (26%), Positives = 93/196 (47%), Gaps = 39/196 (19%)

Query: 1   MGPSGSGKTTLLNVLAGQL--MASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQL 58
           +G +G GKT+L++ + G+L    +  + + G +              AYV Q    F+  
Sbjct: 649 VGGTGEGKTSLISAMLGELSHAETSSVVIRGSV--------------AYVPQVSWIFNA- 693

Query: 59  TVRETLSLAAELQLPEILSVEERDEY-----VNSLLFKLGLVSCAD-SNVGDAKVRGISG 112
           TVRE +   ++          E + Y     V +L   L L+   D + +G+  V  ISG
Sbjct: 694 TVRENILFGSDF---------ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGV-NISG 743

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
           G+K+R+S+A  + ++  +   D+P + LDA  A +V ++  +    G T +   +Q    
Sbjct: 744 GQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQ---- 799

Query: 173 VYF--KFDDIVLLTEG 186
           ++F    D I+L++EG
Sbjct: 800 LHFLPLMDRIILVSEG 815

Length = 1495

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 80  ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTG 139
           E DE V + L K GL       + +    G+SGG+++RL +A  +  SP VI  DEP + 
Sbjct: 135 ELDEIVETSLRKAGLWEEVKDRLHEPGT-GLSGGQQQRLCIARAIAVSPEVILMDEPCSA 193

Query: 140 LDAFQAEKVMEALRQLAQDGHTVI 163
           LD     KV E + +L Q+   VI
Sbjct: 194 LDPIATAKVEELIDELRQNYTIVI 217

Length = 267

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 21/204 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDL 53
           +GPSG GK+T L  +       P  H +G L  +G+    K         K   V Q+  
Sbjct: 71  IGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130

Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
            F + ++ + ++    L    I   ++ +E V   L K  L       + D    G+SGG
Sbjct: 131 PFPK-SIFDNIAYGPRLH--GINDKKQLEEIVEKSLRKAALWDEVSDRL-DKNALGLSGG 186

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ----P 169
           +++RL +A  L   P ++  DEPT+ LD     K+ E L Q  +  +T++   H      
Sbjct: 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI-EDLIQELRGSYTIMIVTHNMQQAS 245

Query: 170 RGSVYFKFDDIVLLTEGKLVYAGP 193
           R S Y  F       EG LV   P
Sbjct: 246 RVSDYTMF-----FYEGVLVEHAP 264

Length = 286

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 50/181 (27%), Positives = 74/181 (40%), Gaps = 29/181 (16%)

Query: 2   GPSGSGKTTLLNVL-------AGQLMASPRLHLSGLLE-VNGKPSSNKAYK---FAYVRQ 50
           GPSGSGK+TLL  L        GQ++     H    ++ V  +P      +     YV Q
Sbjct: 44  GPSGSGKSTLLRSLYANYLPDEGQILVR---HEGEWVDLVTAEPREVLEVRRTTIGYVSQ 100

Query: 51  EDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLG----LVSCADSNVGDAK 106
              F   +     L + AE  L   +  E        LL +L     L S A +      
Sbjct: 101 ---FLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPAT----- 152

Query: 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
               SGGE++R+++A   I    ++  DEPT  LDA     V+E +R+    G  ++   
Sbjct: 153 ---FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIF 209

Query: 167 H 167
           H
Sbjct: 210 H 210

Length = 235

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 45.0 bits (106), Expect = 8e-05
 Identities = 56/221 (25%), Positives = 90/221 (40%), Gaps = 34/221 (15%)

Query: 1   MGPSGSGKTTLLNVL-------AGQLMAS----PRLHLSGLLEVNGKPSSNKAYKFAYVR 49
           MG SGSGK+T++ +L        GQ++       ++  + L EV  K       K A V 
Sbjct: 60  MGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRK-------KIAMVF 112

Query: 50  QEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRG 109
           Q       +TV +  +   EL     ++ EER E     L ++GL      N   +    
Sbjct: 113 QSFALMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGL-----ENYAHSYPDE 164

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           +SGG ++R+ LA  L  +P ++  DE  + LD     ++ + L +L       I  I   
Sbjct: 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224

Query: 170 RGSVYFKFDDIVLLTEGKLVYAG--------PARDEPLAYF 202
                   D I ++  G++V  G        PA D    +F
Sbjct: 225 LDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFF 265

Length = 400

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 36/217 (16%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE--------- 51
           +G +G GK+TL   L+G L         G +   GKP          +RQ+         
Sbjct: 33  VGANGCGKSTLFMNLSGLLRPQ-----KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPE 87

Query: 52  -DLFFSQLTVRETLSLAAELQLPEILSVEERDE---YVNSLLFKLGLVSCADSNVGDAKV 107
             +F++ +      SL   L +PE       DE    V++  F+   + C          
Sbjct: 88  QQIFYTDIDSDIAFSLR-NLGVPEAEITRRVDEALTLVDAQHFRHQPIQC---------- 136

Query: 108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
             +S G+KKR+++A  L+     +  DEPT GLD     +++  +R++   G+ VI S H
Sbjct: 137 --LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSH 194

Query: 168 QPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSR 204
                +Y   D + +L +G+++  G     P   F+ 
Sbjct: 195 DI-DLIYEISDAVYVLRQGQILTHG----APGEVFAC 226

Length = 271

>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN

 Score = 44.1 bits (105), Expect = 9e-05
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 105 AKVRGISGGEKKRLSLACELIAS-----PSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159
           AK+   SGGE  RL LA + I +     P++I+ DE  TG+    A+ V + L++L++  
Sbjct: 168 AKI--ASGGELSRLMLALKAILARKDAVPTLIF-DEIDTGISGEVAQAVGKKLKELSR-S 223

Query: 160 HTVICSIHQP 169
           H V+C  H P
Sbjct: 224 HQVLCITHLP 233

RecN ATPase involved in DNA repair; similar to ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 276

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 18/203 (8%)

Query: 1   MGPSGSGKTTLLNVLAGQ---LMASPRLHLSG--LLEVNGKPSSNKAYKFAYVRQEDL-- 53
           MGP+GSGK+TL   LAG+    +    +   G  LLE++ +  + +    A+    ++  
Sbjct: 33  MGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92

Query: 54  ----FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRG 109
               FF Q  +    S   +  L       +R ++ + +  K+ L+   +  +  +   G
Sbjct: 93  VSNQFFLQTALNAVRSYRGQEPL-------DRFDFQDLMEEKIALLKMPEDLLTRSVNVG 145

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
            SGGEKKR  +    +  P +   DE  +GLD    + V + +  L     + I   H  
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ 205

Query: 170 RGSVYFKFDDIVLLTEGKLVYAG 192
           R   Y K D + +L +G++V +G
Sbjct: 206 RILDYIKPDYVHVLYQGRIVKSG 228

Length = 248

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 21/171 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLF-FSQLTV 60
           G SG+GKTTLL ++ G                +GK    K    A +  E    F ++T+
Sbjct: 416 GQSGAGKTTLLRMILGAQKGRG---EEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTI 472

Query: 61  RETLSLAAELQLPEILSVEERDEYVN-SLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
            E         L         D      +L + GL   +D+ +   K   +S G+K+R  
Sbjct: 473 LE--------HLRSKTG----DLNAAVEILNRAGL---SDAVLYRRKFSELSTGQKERAK 517

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQP 169
           LA  L   P+V+  DE    LD   A +V   + +LA++ G T+I   H+P
Sbjct: 518 LAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP 568

Length = 593

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 24/206 (11%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSG---------LLEVNGKPSSNKAYKFAYVRQE 51
           MGP+GSGK+TL   +       P   ++          LLE+     +      A+   E
Sbjct: 32  MGPNGSGKSTLSKTI----AGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPE 87

Query: 52  DLFFSQLTVRETLSLAA----ELQLPEILSVEERDEYVNSLLFKLGL-VSCADSNVGDAK 106
           ++    ++  E L  A       +  E L + +  + + + L  LG+     + +V +  
Sbjct: 88  EI--PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNE-- 143

Query: 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
             G SGGEKKR  +    +  P +   DE  +GLD    + V E + +L +   + +   
Sbjct: 144 --GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIIT 201

Query: 167 HQPRGSVYFKFDDIVLLTEGKLVYAG 192
           H  R   Y K D + +L +G++V +G
Sbjct: 202 HYQRLLNYIKPDYVHVLLDGRIVKSG 227

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 7/64 (10%)

Query: 111 SGGEKKRLSLACELIAS-----PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICS 165
           SGGE  R+ LA ++I S     P++I+ DE  TG+    A+ V + LR+L++  H V+C 
Sbjct: 433 SGGELSRIMLALKVILSRKDDTPTLIF-DEVDTGISGRVAQAVGKKLRRLSE-HHQVLCV 490

Query: 166 IHQP 169
            H P
Sbjct: 491 THLP 494

Length = 557

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 34/205 (16%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYV---RQED 52
           G  G+G+T L+  L G   A P     G + +NGKP   +          A V   R+  
Sbjct: 293 GLVGAGRTELVQALFG---AYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRH 348

Query: 53  LFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR---- 108
                L V + ++L+        + ++   E           +    S +   KV+    
Sbjct: 349 GIVPILGVGKNITLSVLKSFCFKMRIDAAAE-----------LQIIGSAIQRLKVKTASP 397

Query: 109 -----GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
                 +SGG +++  LA  L+ +P V+  DEPT G+D     ++ + + QLAQ+G  +I
Sbjct: 398 FLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457

Query: 164 CSIHQPRGSVYFKFDDIVLLTEGKL 188
             +      V    D ++++ EGKL
Sbjct: 458 V-VSSELAEVLGLSDRVLVIGEGKL 481

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGHTVICSIHQP 169
           SGG+++R+ +A  L   P ++ ADEPTT LD   QA+ +++ L++L  +    I  I   
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQ-ILDLLKELQAELGMAILFITHD 217

Query: 170 RGSVYFKFDDIVLLTEGKLVYAGPARD 196
            G V    D + ++  G++V  G    
Sbjct: 218 LGIVRKFADRVYVMQHGEIVETGTTET 244

Length = 534

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           +SGG+++RL +A  L   P +I  DEPT+ LD     ++ + +  L +D +T++   H  
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKD-YTIVIVTHNM 213

Query: 170 RGSV-------YFKFDDIVLLTEGKLVYAGPARDEPLAYFS-RFG 206
           + +        +F   +++   + + ++  P       Y + RFG
Sbjct: 214 QQAARISDYTGFFLMGELIEFGQTRQIFHNPREKSTEDYITGRFG 258

Length = 258

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 18/114 (15%)

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ- 168
           +SGG+++RL +A  +   P VI  DEP + LD     ++ E + +L +  +T+I   H  
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNM 210

Query: 169 ---PRGSVYFKFDDIVLLTEGK------------LVYAGPARDEPLAYFS-RFG 206
               R S    F ++ L   G              ++  P +     Y S RFG
Sbjct: 211 QQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATRDYVSGRFG 264

Length = 264

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 5/60 (8%)

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI-HQP 169
           SGGE++RL+ A  L+  P  ++ DE T+ LD    +++ + L++L   G TVI S+ H+P
Sbjct: 93  SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVI-SVGHRP 148

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 44.6 bits (105), Expect = 2e-04
 Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 37/285 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQL-MASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +G  G GK++LL+ L  ++      +H+ G                AYV Q+  +    +
Sbjct: 670 VGQVGCGKSSLLSALLAEMDKVEGHVHMKG--------------SVAYVPQQ-AWIQNDS 714

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCAD-SNVGDAKVRGISGGEKKRL 118
           +RE +     L       V E      +LL  L ++   D + +G+  V  +SGG+K+R+
Sbjct: 715 LRENILFGKALNEKYYQQVLE----ACALLPDLEILPSGDRTEIGEKGV-NLSGGQKQRV 769

Query: 119 SLACELIASPSVIYADEPTTGLDAFQA----EKVMEALRQLAQDGHTVICSIHQPRGSVY 174
           SLA  + ++  +   D+P + +DA       E V+     L     T I   H   G  Y
Sbjct: 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK--NKTRILVTH---GISY 824

Query: 175 F-KFDDIVLLTEGKLVYAGP-----ARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYS 228
             + D I++++ GK+   G       RD   A F R         +  +    L+S +  
Sbjct: 825 LPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGK 884

Query: 229 SAESVYLSQKRIDSLAESFLQRSSTILYASPLISREGYKKSKLQK 273
            A+ +       D + +   ++ S     S   SR     ++LQK
Sbjct: 885 EAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQK 929

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 29/175 (16%)

Query: 5   GSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYV---RQEDLFF 55
           G+G+T L+ VL G   A PR   SG + ++G     +      A    Y+   R+ D   
Sbjct: 288 GAGRTELMKVLYG---ALPRT--SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342

Query: 56  SQLTVRETLSLAAELQLP----EILSVEER---DEYVNSLLFKLGLVSCADSNVGDAKVR 108
             ++V+E +SL A          +   +E+    +++   LF +   S       +  + 
Sbjct: 343 LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFI--RLFNIKTPSM------EQAIG 394

Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
            +SGG ++++++A  L+  P V+  DEPT G+D    +++ + + Q   +G ++I
Sbjct: 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSII 449

Length = 501

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 24/167 (14%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NKAYKFAYVRQEDLFFS-- 56
           +G SG GK+TL  +L G  + SP     G +   G+P +  N+A + A+ R   + F   
Sbjct: 44  LGRSGCGKSTLARLLVG--LESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDS 98

Query: 57  ------QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
                 + TVRE   +   L+    L   ER    + +L  + L    D +V D +   +
Sbjct: 99  ISAVNPRKTVRE--IIREPLRHLLSLDKAERLARASEMLRAVDL----DDSVLDKRPPQL 152

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLD-AFQAE--KVMEALRQ 154
           SGG+ +R+ LA  L   P ++  DE  + LD   QA   ++++ L+Q
Sbjct: 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ 199

Length = 268

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 43.2 bits (103), Expect = 3e-04
 Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 38/160 (23%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQ--EDLFFSQLT 59
           GP+G+GK+TL  ++ GQ         SG +++       +  K AYV Q  + L  ++ T
Sbjct: 357 GPNGAGKSTLFKMITGQEQPD-----SGTIKIG------ETVKLAYVDQSRDALDPNK-T 404

Query: 60  VRETLSLAAELQLPEILSVEERD----EYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
           V E +S   +     I+ V  R+     YV    FK G     D      KV  +SGGE+
Sbjct: 405 VWEEISGGLD-----IIKVGNREIPSRAYVGRFNFK-G----GDQQ---KKVGVLSGGER 451

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155
            RL LA  L    +V+  DEPT  LD       +E LR L
Sbjct: 452 NRLHLAKTLKQGGNVLLLDEPTNDLD-------VETLRAL 484

Length = 556

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 3/111 (2%)

Query: 82  DEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLD 141
           DE V   L  +GL       + D+    +SGG+++RL +A  +   P+++  DEP + LD
Sbjct: 123 DEIVEKSLTSVGLWEELGDRLKDSAFE-LSGGQQQRLCIARAIAVKPTMLLMDEPCSALD 181

Query: 142 AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192
              A  V+E L Q  +   T+I   H  + +     D +     G++V   
Sbjct: 182 PV-ATNVIENLIQELKKNFTIIVVTHSMKQAKKVS-DRVAFFQSGRIVEYN 230

Length = 251

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 29/192 (15%)

Query: 2   GPSGSGKTTLLNVLAGQL--MASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           G +G GKT+L++ + G+L   +   + + G                AYV Q    F+  T
Sbjct: 650 GSTGEGKTSLISAMLGELPPRSDASVVIRG--------------TVAYVPQVSWIFNA-T 694

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCAD-SNVGDAKVRGISGGEKKRL 118
           VR+ +   +           ER   V +L   L L+   D + +G+  V  ISGG+K+R+
Sbjct: 695 VRDNILFGSPFDPERY----ERAIDVTALQHDLDLLPGGDLTEIGERGV-NISGGQKQRV 749

Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF--K 176
           S+A  + ++  V   D+P + LDA    +V +   +    G T +   +Q    ++F  +
Sbjct: 750 SMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQ----LHFLSQ 805

Query: 177 FDDIVLLTEGKL 188
            D I+L+ EG +
Sbjct: 806 VDRIILVHEGMI 817

Length = 1622

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 52/265 (19%), Positives = 106/265 (40%), Gaps = 41/265 (15%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK---------------- 44
           +G +GSGK+T++ +  G +++     + G   +       K  K                
Sbjct: 43  IGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102

Query: 45  -FAYVRQEDLFFSQLTVRETLSLAAELQLPEILS-VEERDEYVNSLLFKLGLVSCADSNV 102
            F    ++D+ F  + + E    A + ++PE+L  V+  ++YV    F+L          
Sbjct: 103 LFQETIEKDIAFGPVNLGENKQEAYK-KVPELLKLVQLPEDYVKRSPFEL---------- 151

Query: 103 GDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTV 162
                   SGG+K+R++LA  +    + +  DEPT GLD    E  +    +L ++    
Sbjct: 152 --------SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKR 203

Query: 163 ICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADL 222
           I  +      V    D+++++ EGK++  G     P   FS         ++P +    +
Sbjct: 204 IIMVTHNMDQVLRIADEVIVMHEGKVISIG----SPFEIFSNQELLTKIEIDPPKLYQLM 259

Query: 223 ISVDYSSAESVYLSQKRIDSLAESF 247
             +     + +  + + I+  A+  
Sbjct: 260 YKLKNKGIDLLNKNIRTIEEFAKEL 284

Length = 289

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 24/83 (28%), Positives = 46/83 (55%)

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           +SGG ++R+ +A  L   P+V+ ADEPTT LD     ++++ ++ L ++    +  I   
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228

Query: 170 RGSVYFKFDDIVLLTEGKLVYAG 192
            G V    D ++++ +G+ V  G
Sbjct: 229 MGVVAEIADRVLVMYQGEAVETG 251

Length = 623

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 27/176 (15%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS-----NKAYKFAYVRQE-DLF 54
           +G +GSGK+T   ++ G           G ++++G+  +     N   K   V Q  D  
Sbjct: 39  IGQNGSGKSTTARLIDGLFE-----EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQ 93

Query: 55  FSQLTVRETLSLAAELQ-LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRG---I 110
           F   TV + ++   E Q +P     EE  + V+  L  +        N+ D K R    +
Sbjct: 94  FVGATVEDDVAFGMENQGIPR----EEMIKRVDEALLAV--------NMLDFKTREPARL 141

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
           SGG+K+R+++A  +   P +I  DE T+ LD    +++M  + ++ +     + SI
Sbjct: 142 SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSI 197

Length = 277

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 24/177 (13%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVR-------QEDL 53
           +GPSG GK+T+L  L       P   + G + ++G+           VR       Q   
Sbjct: 36  IGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95

Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGD-AKVR---- 108
            F  +++R+  ++ A L+L  + + ++ DE V          S   +N+ +  K R    
Sbjct: 96  PFPTMSIRD--NVVAGLKLNGVRNKKDLDELVEK--------SLRGANLWNEVKDRLDKP 145

Query: 109 --GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
             G+SGG+++RL +A  +   P V+  DEP + LD      + + + +L QD   VI
Sbjct: 146 GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVI 202

Length = 258

>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 111 SGGEKKRLSLACELI-----ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICS 165
           SGGE  R+ LA +++     A  ++I+ DE   G+    A+ + + L QL++  H V+C 
Sbjct: 442 SGGELSRVMLALKVVLSSSAAVTTLIF-DEVDVGVSGETAQAIAKKLAQLSE-RHQVLCV 499

Query: 166 IHQP 169
            H P
Sbjct: 500 THLP 503

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair [DNA metabolism, DNA replication, recombination, and repair]. Length = 563

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           +SGG+++RL +A  L   P+V+  DEP + LD     K+ E + +L ++   +I + +  
Sbjct: 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQ 224

Query: 170 RGS------VYFKFDDIVLLTEGKLVYAGPARDEPLAYFS-RFG 206
           +         +F   D+V   + + ++  P + +   Y + RFG
Sbjct: 225 QALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQQKTEDYINGRFG 268

Length = 268

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.4 bits (99), Expect = 5e-04
 Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 29/210 (13%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +GPSG GK+T L  L           L+ L+E  G     + Y F          S L +
Sbjct: 114 IGPSGCGKSTFLRNLN---------QLNDLIE--GTSHEGEIY-FLGTNTRSKKISSLEL 161

Query: 61  RETLSLAAELQLPEILSVEE------RDEYVN--SLLFKL---GLVSCA--DSNVGDAKV 107
           R  + +  +   P  +S+ +      R+  +N   +L K+    L S A  D    D   
Sbjct: 162 RTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDK 221

Query: 108 RG--ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICS 165
            G  +SGG+++RL +A  +   P V+  DEPT+ LD     K+ E + +L +  +++I  
Sbjct: 222 AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKK-YSIIIV 280

Query: 166 IHQPRGSVYFKFDDIVLLTEGKLVYAGPAR 195
            H    +     D+ V   +G +  AG  +
Sbjct: 281 THSMAQAQRIS-DETVFFYQGWIEEAGETK 309

Length = 329

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 60/217 (27%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK---PSSNKAY------KFAYVRQED 52
           G SG+GKT+L+N ++G  +  P+    G + +NG+    +           +  YV Q+ 
Sbjct: 31  GRSGAGKTSLINAISG--LTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDA 85

Query: 53  LFFSQLTVRETL------SLAAE-LQLPEILSVEERDEYVNSLL--FKLGLVSCADSNVG 103
             F    VR  L      S+ A+  ++  +L +E        LL  +   L         
Sbjct: 86  RLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIE-------PLLDRYPGSL--------- 129

Query: 104 DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
                  SGGEK+R+++   L+ +P ++  DEP   LD  +  +++  L +LA++     
Sbjct: 130 -------SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE----- 177

Query: 164 CSIHQPRGSVYFKFDDI-------VLLTEGKLVYAGP 193
             I+ P   V    D+I       V+L +GK+   GP
Sbjct: 178 --INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212

Length = 352

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 15/119 (12%)

Query: 48  VRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEY-VNSLLFKLGLVSCADSNVGDAK 106
           +R+   FF+QLT+       AE  L EI    ER  + ++  L  L L   A +      
Sbjct: 438 IREAHEFFNQLTLTPEEKKIAEEVLKEIR---ERLGFLIDVGLDYLSLSRAAGT------ 488

Query: 107 VRGISGGEKKRLSLACELIASPS-VIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
              +SGGE +R+ LA ++ +  + V+Y  DEP+ GL      +++  L++L   G+T+I
Sbjct: 489 ---LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNRRLINTLKRLRDLGNTLI 544

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 24/167 (14%)

Query: 1   MGPSGSGKTTLL---NVLA----GQLMASPRLHLSGLLEVNGKPSSN----KAYKFAYVR 49
           MG SGSGK+TLL   N L     G ++        G ++V    ++     + ++ + V 
Sbjct: 56  MGLSGSGKSTLLRAVNGLNPVSRGSVLVK---DGDGSVDVANCDAATLRRLRTHRVSMVF 112

Query: 50  QEDLFFSQLTVRETLSLAAELQ-LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
           Q+       TV E ++   E+Q +P+     ER + V+  L  +GL   AD   G+    
Sbjct: 113 QQFALLPWRTVEENVAFGLEMQGMPK----AERRKRVDEQLELVGLAQWADRKPGE---- 164

Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155
            +SGG ++R+ LA        ++  DEP + LD     ++ + L +L
Sbjct: 165 -LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLEL 210

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 26/204 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLF---FSQL 58
           G +GSGK+TL  +L G  +  P+   SG + ++GKP S +  +        LF   FS  
Sbjct: 356 GGNGSGKSTLAMLLTG--LYQPQ---SGEILLDGKPVSAEQLE----DYRKLFSAVFSDY 406

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
            + + L     L      S +  ++++  L       S  D    + K   +S G+KKRL
Sbjct: 407 HLFDQL-----LGPEGKASPQLIEKWLQRLELA-HKTSLNDGRFSNLK---LSTGQKKRL 457

Query: 119 SLACELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           +L   L+    ++  DE     D AF+ E     L  L + G T+    H      YF  
Sbjct: 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH---YFIH 514

Query: 178 -DDIVLLTEGKLVYAGPARDEPLA 200
            D ++ +  G+L        +  A
Sbjct: 515 ADRLLEMRNGQLSELTGEERDETA 538

Length = 546

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQ 168
           +SGG  +R+ +A  L+     I ADEPTT LD     ++++ L  + Q     ++   H 
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200

Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD 196
             G V    DD+ +++ G++V  G    
Sbjct: 201 -MGVVARLADDVAVMSHGRIVEQGDVET 227

Length = 254

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 42.1 bits (99), Expect = 8e-04
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 10/121 (8%)

Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVN---SLLFKLGLVSCADSNVGDAKVRGIS 111
           F Q++++E     ++L   + LS+EE  + +    S+L  LGL         +  +  +S
Sbjct: 424 FQQMSLQELFIFLSQLP-SKSLSIEEVLQGLKSRLSILIDLGLPYLTP----ERALATLS 478

Query: 112 GGEKKRLSLACELIASPS-VIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           GGE++R +LA  L A    + Y  DEP+ GL      K++  +++L   G+TV+   H  
Sbjct: 479 GGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538

Query: 170 R 170
           +
Sbjct: 539 Q 539

Length = 1809

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQD 158
              SGG ++RL +A  L+  P +++ DEPT GLD + QA ++++ LR L ++
Sbjct: 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQA-RLLDLLRGLVRE 200

Length = 258

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 54/201 (26%), Positives = 99/201 (49%), Gaps = 28/201 (13%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK-----FAYVRQE----- 51
           G +GSGK+TL ++L G    +      G + ++G+P S+ ++       A V+Q+     
Sbjct: 374 GHTGSGKSTLASLLMGYYPLT-----EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA 428

Query: 52  DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
           D F + +T+   +S   E Q+ + L   +  E   SL    GL     + +G+ +   +S
Sbjct: 429 DTFLANVTLGRDIS---EEQVWQALETVQLAELARSL--PDGL----YTPLGE-QGNNLS 478

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171
            G+K+ L+LA  L+ +P ++  DE T  +D+   + + +AL  + +  HT +  I   R 
Sbjct: 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAH-RL 535

Query: 172 SVYFKFDDIVLLTEGKLVYAG 192
           S   + D I++L  G+ V  G
Sbjct: 536 STIVEADTILVLHRGQAVEQG 556

Length = 592

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 35/200 (17%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA---YKFAYVRQEDLF--- 54
           +G +G GK+TL  +  G  +  P+    G + ++G   S  +   Y+       DLF   
Sbjct: 374 VGENGCGKSTLAKLFCG--LYIPQ---EGEILLDGAAVSADSRDDYR-------DLFSAI 421

Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL---VSCADSNVGDAKVRGIS 111
           F+   + + L    E +     S++   +Y    L +L +   V   D     +    +S
Sbjct: 422 FADFHLFDDLIGPDEGEHA---SLDNAQQY----LQRLEIADKVKIEDGGF--STTTALS 472

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGHTVICSIHQPR 170
            G++KRL+L C  +    ++  DE     D AF+     E L  L + G T+I   H  +
Sbjct: 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ 532

Query: 171 GSVYFKF-DDIVLLTEGKLV 189
              YF+  D I+ L  G +V
Sbjct: 533 ---YFELADQIIKLAAGCIV 549

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 105 AKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVIC 164
            K   +SGG+++RL +A  +   P V+  DEP + LD     +V E   +L +  +T+I 
Sbjct: 157 EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ-YTIIM 215

Query: 165 SIH 167
             H
Sbjct: 216 VTH 218

Length = 274

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 14/143 (9%)

Query: 1   MGPSGSGKTTLLNVLAG-QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +G SG GK+TLL +LAG +   + ++ L G+ +++  P   +     +  Q    F  +T
Sbjct: 51  LGASGCGKSTLLRMLAGFEQPTAGQIMLDGV-DLSHVPPYQRPINMMF--QSYALFPHMT 107

Query: 60  VRETLSLA-AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
           V + ++    + +LP       + E  + +   LGLV   +      K   +SGG+++R+
Sbjct: 108 VEQNIAFGLKQDKLP-------KAEIASRVNEMLGLVHMQE--FAKRKPHQLSGGQRQRV 158

Query: 119 SLACELIASPSVIYADEPTTGLD 141
           +LA  L   P ++  DEP   LD
Sbjct: 159 ALARSLAKRPKLLLLDEPMGALD 181

Length = 377

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 8/65 (12%)

Query: 107 VRGISGGEKKRLSLAC-----ELIASPSVIYA---DEPTTGLDAFQAEKVMEALRQLAQD 158
           ++ +SGGE+   SLA      +L+   + +     DEP   LD  + EK+ E L +L  D
Sbjct: 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD 872

Query: 159 GHTVI 163
           G  +I
Sbjct: 873 GRQII 877

Length = 908

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 101 NVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160
           N  +   R +SGG ++++ +A  L ASP ++  DEPT G+D      + + +R +A    
Sbjct: 395 NHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNV 454

Query: 161 TVI 163
            V+
Sbjct: 455 AVL 457

Length = 510

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 18/171 (10%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP------SSNKAYKFAYVRQEDLFF 55
           G +G+GK+TL+ +L+G     P     G +  +G P         +      + QE    
Sbjct: 34  GENGAGKSTLMKILSG---VYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLV 90

Query: 56  SQLTVRETLSLAAELQLP-EILSVEERDEYVNSLLFKLGLVSCADS-NVGDAKVRGISGG 113
            +L+V E + L  E+ LP   ++         +LL +L L +   +  VGD       GG
Sbjct: 91  PELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGD-----YGGG 145

Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVIC 164
           +++ + +A  L     ++  DEP++ L   + E +++ +R L    H V C
Sbjct: 146 QQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA--HGVAC 194

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 3/99 (3%)

Query: 380 YLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGA 439
           YLL K++          +    +L  +  L            +  +   A  A+G  +G+
Sbjct: 139 YLLGKILG---DLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGS 195

Query: 440 MVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWI 478
           +   +EAA+ V   L+ +   F G      N P   +WI
Sbjct: 196 LFKNSEAAILVISILILLLSGFFGGLFPLPNMPSFLQWI 234

This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278

>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 110 ISGGEKKRLSLACELIAS-PSVIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           +SGGE +R+ LA ++ +    V+Y  DEP+ GL     ++++E L++L   G+TV+   H
Sbjct: 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197

Query: 168 QP 169
             
Sbjct: 198 DE 199

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 6/82 (7%)

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAF---QAEKVMEALRQLAQDGHTVICSI 166
           +SGG+K+R++LA  LI  P ++  DEP   LDA    + + ++E+L Q  Q G TV+   
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQ--QHGFTVLLVT 191

Query: 167 HQPRGSVYFKFDDIVLLTEGKL 188
           H    +V    D ++L+ EGK+
Sbjct: 192 HDVSEAVAMA-DRVLLIEEGKI 212

Length = 257

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 106 KVRGIS--GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           KV G+S  GG+++RL +A  +   P V+  DEP + LD     +V E + +L +D +T+ 
Sbjct: 144 KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD-YTIA 202

Query: 164 CSIH 167
              H
Sbjct: 203 LVTH 206

Length = 261

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 40.6 bits (96), Expect = 0.002
 Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 32/156 (20%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQ--EDLFFSQLT 59
           G +G GKTTLL  L G+L        SG +    K S N      Y  Q     F + LT
Sbjct: 352 GENGVGKTTLLRTLVGELEPD-----SGTV----KWSENA--NIGYYAQDHAYDFENDLT 400

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           + + +S        +     + ++ V   L +L L S  D       V+ +SGGEK R+ 
Sbjct: 401 LFDWMS--------QWRQEGDDEQAVRGTLGRL-LFSQDDIK---KSVKVLSGGEKGRML 448

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155
               ++  P+V+  DEPT  +D       ME++  L
Sbjct: 449 FGKLMMQKPNVLVMDEPTNHMD-------MESIESL 477

Length = 530

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 46/198 (23%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +GP+G GK+T+L +++G+L                +PSS   ++ A VR     FSQ  V
Sbjct: 541 VGPNGIGKSTILKLISGEL----------------QPSSGTVFRSAKVRMA--VFSQHHV 582

Query: 61  RETLSLAAELQL------PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
            + L L++   L      P +      ++ + + L   G+      N+    +  +SGG+
Sbjct: 583 -DGLDLSSNPLLYMMRCFPGVP-----EQKLRAHLGSFGVTG----NLALQPMYTLSGGQ 632

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI----HQPR 170
           K R++ A      P ++  DEP+  LD    E +++ L  L Q G   +  +    H   
Sbjct: 633 KSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL-VLFQGG---VLMVSHDEHLIS 688

Query: 171 GSVYFKFDDIVLLTEGKL 188
           GSV    D++ +++EGK+
Sbjct: 689 GSV----DELWVVSEGKV 702

Length = 718

>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 16/192 (8%)

Query: 313 IASAIIFGSVF-WRMGRSQT----SIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVD 367
           I   IIFG +F  R G S      S      L  +      M+ L   +  F    + + 
Sbjct: 56  ILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFS---SALF 112

Query: 368 RERAKGSYAL-----GPYLLSKLIAEIPVGAAFPLMFGAVLYPMARL--HPTLSRFGKFC 420
           RER  G+           L   L   +P      L+ G VL  +A L   P L       
Sbjct: 113 REREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLL 172

Query: 421 GIVTVESFAASAMGLTVGAMVPT-TEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIP 479
            ++ +   A  A+GL +     +  + A AVG  L+       G +   +  P   + I 
Sbjct: 173 LLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGIS 232

Query: 480 RVSLIRWAFQGL 491
            ++ + +A   L
Sbjct: 233 YINPLTYAIDAL 244

Length = 286

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           G+SGG+++RL +A  +   P V+  DEPT+ LD     K+ E + +L    +T++   H
Sbjct: 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSK-YTIVIVTH 225

Length = 272

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           +SGG+++RL +A  +   P VI  DEP + LD     K+ E + +L ++  T++   H
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN-FTIVIVTH 211

Length = 269

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 26/87 (29%), Positives = 44/87 (50%)

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           +SGG  +R+ +A  +   P ++ ADEPTT LD     +++E L +L Q  +  +  I   
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213

Query: 170 RGSVYFKFDDIVLLTEGKLVYAGPARD 196
              V      I+++  G++V  G A D
Sbjct: 214 LALVAEAAHKIIVMYAGQVVETGKAHD 240

Length = 326

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 2  GPSGSGKTTLLNVLAGQLMAS 22
          G SGSGKTTLLN L+ +L   
Sbjct: 39 GESGSGKTTLLNALSARLAPD 59

Length = 258

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           +SGG+++RL +A  +   P ++  DEP + LD     ++ E + +L ++ +T+I   H
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN-YTIIIVTH 220

Length = 267

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	607
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	99.98
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.98
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.98
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.98
PRK10938	490	putative molybdenum transport ATP-binding protein	99.98
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.98
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.98
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.98
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.98
COG4987	573	CydC ABC-type transport system involved in cytochr	99.98
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.98
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.98
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.98
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.97
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.97
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.97
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.97
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.97
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.97
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.97
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.97
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.97
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.97
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.97
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.97
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.97
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.97
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.97
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.97
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.97
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.97
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.97
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.97
PRK10938	490	putative molybdenum transport ATP-binding protein	99.97
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.97
PRK13409	590	putative ATPase RIL; Provisional	99.97
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.97
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.97
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.97
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.97
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.97
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.97
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.97
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.97
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.97
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.97
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.97
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.97
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.97
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.97
PLN03232	1495	ABC transporter C family member; Provisional	99.97
PLN03130	1622	ABC transporter C family member; Provisional	99.96
COG4172	534	ABC-type uncharacterized transport system, duplica	99.96
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.96
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.96
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.96
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.96
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.96
PTZ00243	1560	ABC transporter; Provisional	99.96
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.96
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.96
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.96
PRK11147	635	ABC transporter ATPase component; Reviewed	99.96
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.96
PRK13409	590	putative ATPase RIL; Provisional	99.96
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.95
PLN03073	718	ABC transporter F family; Provisional	99.95
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.95
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.95
PLN03130	1622	ABC transporter C family member; Provisional	99.95
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.95
PLN03232	1495	ABC transporter C family member; Provisional	99.95
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.95
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.95
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.95
PRK11147	635	ABC transporter ATPase component; Reviewed	99.95
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.95
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.95
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.95
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.94
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.94
COG0488	530	Uup ATPase components of ABC transporters with dup	99.94
PTZ00243	1560	ABC transporter; Provisional	99.94
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.94
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.93
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.93
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.92
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.92
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.92
PLN03073	718	ABC transporter F family; Provisional	99.92
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.91
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.91
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.91
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.91
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.9
COG0488	530	Uup ATPase components of ABC transporters with dup	99.9
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.89
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.89
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.89
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.89
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.86
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.85
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.85
COG4178	604	ABC-type uncharacterized transport system, permeas	99.84
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.84
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.83
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.82
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.82
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.81
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.79
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.78
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.78
KOG0062	582	consensus ATPase component of ABC transporters wit	99.77
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.76
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.75
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.74
KOG0062	582	consensus ATPase component of ABC transporters wit	99.74
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.74
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.73
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.73
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.72
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.71
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.7
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.67
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.67
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.65
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.65
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.61
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.6
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.59
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.58
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.56
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	99.54
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.51
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.5
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.47
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	99.47
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	99.46
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.46
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	99.42
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	99.41
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.39
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.38
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.32
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.31
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.28
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.27
PRK15066	257	inner membrane transport permease; Provisional	99.27
PRK10869	553	recombination and repair protein; Provisional	99.24
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.23
PHA02562	562	46 endonuclease subunit; Provisional	99.22
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.21
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.13
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.12
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.12
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.08
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.06
PRK03918	880	chromosome segregation protein; Provisional	99.04
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.03
COG3910	233	Predicted ATPase [General function prediction only	99.0
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.97
PRK13695	174	putative NTPase; Provisional	98.96
cd01128	249	rho_factor Transcription termination factor rho is	98.93
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.92
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.92
PRK01156	895	chromosome segregation protein; Provisional	98.91
COG0842	286	ABC-type multidrug transport system, permease comp	98.88
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.86
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.84
TIGR01248	152	drrC daunorubicin resistance protein C. The model	98.81
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.79
PRK00064	361	recF recombination protein F; Reviewed	98.77
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.76
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.76
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.74
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.73
PRK02224	880	chromosome segregation protein; Provisional	98.72
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.66
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.57
PRK06067	234	flagellar accessory protein FlaH; Validated	98.54
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.54
TIGR00611	365	recf recF protein. All proteins in this family for	98.5
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.49
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	98.49
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.48
PRK14079	349	recF recombination protein F; Provisional	98.48
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.45
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	98.41
smart00382	148	AAA ATPases associated with a variety of cellular	98.39
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.26
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	98.19
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.19
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	98.15
PF06422	103	PDR_CDR: CDR ABC transporter; InterPro: IPR010929	98.13
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.13
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.1
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.09
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.98
PRK15176	264	Vi polysaccharide export inner membrane protein Ve	97.98
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.96
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	97.82
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	97.77
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.76
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.73
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	97.66
COG1277	278	NosY ABC-type transport system involved in multi-c	97.66
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	97.65
PRK11545	163	gntK gluconate kinase 1; Provisional	97.64
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.63
PRK05399	854	DNA mismatch repair protein MutS; Provisional	97.63
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.62
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	97.57
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	97.47
PRK06893	229	DNA replication initiation factor; Validated	97.45
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	97.44
PRK09825	176	idnK D-gluconate kinase; Provisional	97.38
PRK13764	602	ATPase; Provisional	97.37
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	97.32
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	97.31
cd01881	176	Obg_like The Obg-like subfamily consists of five w	97.29

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1e-104  Score=896.53  Aligned_cols=545  Identities=39%  Similarity=0.674  Sum_probs=484.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~   78 (607)
                      |||||||||||||+|+|+.+.+  ..++|+|++||++.+..  ++.+|||+|||.++++|||+|+|.|+|.+|+|+..++
T Consensus        62 mG~SGsGKtTLL~~Lagr~~~~--~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~  139 (613)
T KOG0061|consen   62 MGPSGSGKTTLLNALAGRLNGG--LKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSK  139 (613)
T ss_pred             ECCCCCCHHHHHHHHhccccCC--CcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCH
Confidence            7999999999999999998764  35799999999776544  4569999999999999999999999999999998899


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344           79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~  158 (607)
                      ++++++|+++++++||.+|+|+.+|+...||+||||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++
T Consensus       140 ~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~  219 (613)
T KOG0061|consen  140 EEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS  219 (613)
T ss_pred             HHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC
Confidence            99999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhhcCCCCCCCCCHHHHHHHhhccCCCchhHHhhhHH
Q 007344          159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQK  238 (607)
Q Consensus       159 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~  238 (607)
                      |+|||+++|||+.+++++||++++|++|+++|+|++++ +.+||++.|++||++.||+||++|+++.+..  ........
T Consensus       220 grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~-~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~--~~~~~~~~  296 (613)
T KOG0061|consen  220 GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRE-LLEFFSSLGFPCPELENPADFLLDLLSVDSG--TRELEEAV  296 (613)
T ss_pred             CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHH-HHHHHHhCCCCCCCcCChHHHHHHHHccCCC--chhHHhHH
Confidence            99999999999999999999999999999999999988 9999999999999999999999999986511  11111122


Q ss_pred             HHHHHHHHHHhcccchhccCCcccccccchhhhhhhhcccccCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 007344          239 RIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRARMSIASAII  318 (607)
Q Consensus       239 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~ali  318 (607)
                      +.....+.++..  ..... ...  ...+......+.......+||.|+++|++|.+++.+|||.+...|+++.+++|++
T Consensus       297 ~~~~~~~~~~~~--~~~~~-~~~--~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~  371 (613)
T KOG0061|consen  297 RIAKLINKFSQT--DNLKK-TLE--ALEKSLSTSKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLL  371 (613)
T ss_pred             HHHHHhhhcccc--chhhh-hHH--HHhhhcccccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHH
Confidence            222222222210  00000 000  0000000000001112689999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 007344          319 FGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLM  398 (607)
Q Consensus       319 ~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~i  398 (607)
                      +|.+||+++++..++++|.|++||.+.++.+.+++.++..|++||++|.||+.+|+|+.++|++|++++++|+.++.+++
T Consensus       372 lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~i  451 (613)
T KOG0061|consen  372 LGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSII  451 (613)
T ss_pred             HHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCccchhhhh
Q 007344          399 FGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWI  478 (607)
Q Consensus       399 f~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl  478 (607)
                      |++|+|||+|++++..+|++|++++++..++++++|+++++++||...|+.++++++++|++|+||+++.++||.||+|+
T Consensus       452 f~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~  531 (613)
T KOG0061|consen  452 FSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWI  531 (613)
T ss_pred             HHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccHHHHHHHHHHHHhhCCCccccCC---CCCcccHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 007344          479 PRVSLIRWAFQGLCINEFSGLQFDHQH---SFDIQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKKPKY  555 (607)
Q Consensus       479 ~yiSp~~y~~eal~~nef~~~~~~~~~---~~~~~~G~~~L~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~l~~~~~~~  555 (607)
                      +|+|+++|++||+++|||.+....|..   ..+..+|+++++++++...++|.|+.++.+++++|++++|+.|+++.++.
T Consensus       532 ~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~  611 (613)
T KOG0061|consen  532 SYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK  611 (613)
T ss_pred             HHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            999999999999999999975556644   34578999999999999999999999999999999999999999887764

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=5.4e-102  Score=881.39  Aligned_cols=548  Identities=33%  Similarity=0.596  Sum_probs=483.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~   78 (607)
                      +||||||||||||+|+|+.+++.  ..+|+|.+||.+.+..  ++.+|||+|+|.+++.+||+|||.|++.++.+...++
T Consensus        57 ~G~sGsGKSTLL~~L~g~~~~~~--~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~  134 (617)
T TIGR00955        57 MGSSGAGKTTLMNALAFRSPKGV--KGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTK  134 (617)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCH
Confidence            69999999999999999987642  3589999999987532  3569999999999999999999999999988776777


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCC-cCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           79 EERDEYVNSLLFKLGLVSCADSNVGDA-KVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~-~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      ++++++++++++.+||.+++|+.+|+. ..++|||||||||+||++|+++|++++|||||+|||+.++..+++.|+++++
T Consensus       135 ~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~  214 (617)
T TIGR00955       135 KEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ  214 (617)
T ss_pred             HHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh
Confidence            788889999999999999999999985 3789999999999999999999999999999999999999999999999998


Q ss_pred             cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhhcCCCCCCCCCHHHHHHHhhccCCCchhHHhhhH
Q 007344          158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQ  237 (607)
Q Consensus       158 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~  237 (607)
                      +|+|||+++|||+.++++.||++++|++|+++|.|++++ +.+||+++|++||++.||+||++++++.+.....   ...
T Consensus       215 ~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~-~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~---~~~  290 (617)
T TIGR00955       215 KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ-AVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN---ESR  290 (617)
T ss_pred             CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHH-HHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc---chH
Confidence            899999999999889999999999999999999999988 8999999999999999999999999876543221   123


Q ss_pred             HHHHHHHHHHHhcccchhccCCccccc---ccchhhhhhhhcccccCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 007344          238 KRIDSLAESFLQRSSTILYASPLISRE---GYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRARMSIA  314 (607)
Q Consensus       238 ~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~  314 (607)
                      ++.+++.+.|+++..............   ..............+..+|++|+++|++|+++..+|||.++.+|++++++
T Consensus       291 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~  370 (617)
T TIGR00955       291 ERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMM  370 (617)
T ss_pred             HHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            445566666665432211100000000   00000000011234578999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHH
Q 007344          315 SAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAA  394 (607)
Q Consensus       315 ~ali~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~  394 (607)
                      +|+++|++||++++++.++++|.|++|+++++.+|.+++.++..|+.||++|.||+.+|+|++++|++|++++|+|+.++
T Consensus       371 ~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~  450 (617)
T TIGR00955       371 TAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFII  450 (617)
T ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888888999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCccch
Q 007344          395 FPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPII  474 (607)
Q Consensus       395 ~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~  474 (607)
                      .+++|++|+|||+|+++++.+|+.|++++++..++++++|+++++++|+..+|+.+++++++++++|+||+++.++||+|
T Consensus       451 ~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~  530 (617)
T TIGR00955       451 LPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVY  530 (617)
T ss_pred             HHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccHHHHHHHHHHHHhhCCCcc-ccCCC----CCcccHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 007344          475 FRWIPRVSLIRWAFQGLCINEFSGLQF-DHQHS----FDIQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLE  549 (607)
Q Consensus       475 ~~Wl~yiSp~~y~~eal~~nef~~~~~-~~~~~----~~~~~G~~~L~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~l~  549 (607)
                      |+|++|+||++|++||++.|||.+.++ +|.++    .|..+|+++|+.+|++..++|.+++++++++++|++++|++|+
T Consensus       531 ~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~  610 (617)
T TIGR00955       531 FKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALR  610 (617)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999876 67532    2456899999999999999999999999999999999999999


Q ss_pred             hcCcc
Q 007344          550 KKKPK  554 (607)
Q Consensus       550 ~~~~~  554 (607)
                      ++.++
T Consensus       611 ~~~~~  615 (617)
T TIGR00955       611 IRIRR  615 (617)
T ss_pred             HHhhc
Confidence            86554

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=2.3e-101  Score=877.51  Aligned_cols=543  Identities=30%  Similarity=0.511  Sum_probs=457.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +||||||||||||+|+|+.+++   ..+|+|.+||++.... .+++|||+|++.+++.+||+||+.+++.++.+...+++
T Consensus       100 ~GpnGaGKSTLL~iLaG~~~~~---~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~  176 (659)
T PLN03211        100 LGPSGSGKSTLLNALAGRIQGN---NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQ  176 (659)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC---ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHH
Confidence            6999999999999999998764   2489999999987543 35699999999999999999999999887766555666


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                      +++++++++++.+||.+++|+.+|++.+++|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++|
T Consensus       177 ~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g  256 (659)
T PLN03211        177 EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKG  256 (659)
T ss_pred             HHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCC
Confidence            77788999999999999999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhhcCCCCCCCCCHHHHHHHhhccCCCchh-HHhhhHH
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAE-SVYLSQK  238 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~~~~-~~~~~~~  238 (607)
                      +|||+++|||+.++++.||++++|++|+++|.|++++ +.+||+++|++||.+.|||||++++++.+..... .......
T Consensus       257 ~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~-~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~  335 (659)
T PLN03211        257 KTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSD-AMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN  335 (659)
T ss_pred             CEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccch
Confidence            9999999999877899999999999999999999988 9999999999999999999999999876432100 0001111


Q ss_pred             HHHHHHHHHHhcccchhc---cCC--ccccccc---chhhhhhhhcccccCCHHHHHHHHHHHHHHHHhcChhHHHHHHH
Q 007344          239 RIDSLAESFLQRSSTILY---ASP--LISREGY---KKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRAR  310 (607)
Q Consensus       239 ~~~~l~~~~~~~~~~~~~---~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~  310 (607)
                      ..+.+.+.|++.......   ...  .......   ...+........+.++||+|+++|++|++++ +||+.+..+|++
T Consensus       336 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~  414 (659)
T PLN03211        336 VKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVF  414 (659)
T ss_pred             HHHHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHH
Confidence            223344455432111000   000  0000000   0000000011124578999999999999998 899998899999


Q ss_pred             HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 007344          311 MSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIP  390 (607)
Q Consensus       311 ~~i~~ali~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp  390 (607)
                      +++++|+++|++||+++  +.++++|.|++||++++.++.+++.++..|+.||+||+||+.+|+|++++|++||+++|+|
T Consensus       415 ~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP  492 (659)
T PLN03211        415 QVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLP  492 (659)
T ss_pred             HHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999985  6789999999999999988888888999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCC
Q 007344          391 VGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADN  470 (607)
Q Consensus       391 ~~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~  470 (607)
                      +.++.+++|++|+|||+||++++.+|+.|++++++..++++++|+++|+++||...|+.+++++++++++|+||+++  +
T Consensus       493 ~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~  570 (659)
T PLN03211        493 MELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--K  570 (659)
T ss_pred             HHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--h
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999997  7


Q ss_pred             ccchhhhhhcccHHHHHHHHHHHHhhCCCc-----cccCCCCC-cccHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 007344          471 TPIIFRWIPRVSLIRWAFQGLCINEFSGLQ-----FDHQHSFD-IQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTT  544 (607)
Q Consensus       471 ip~~~~Wl~yiSp~~y~~eal~~nef~~~~-----~~~~~~~~-~~~G~~~L~~~g~~~~~~~~~~~il~~~~~~~~~l~  544 (607)
                      ||+||+|++|+||++|+|||++.|||.+..     ++|....+ ...+..++...+++..+.|.|++++++++++|++++
T Consensus       571 ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~  650 (659)
T PLN03211        571 LPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLA  650 (659)
T ss_pred             chHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999997643     46754322 111112344444455679999999999999999999


Q ss_pred             HHHHHhcC
Q 007344          545 YLLLEKKK  552 (607)
Q Consensus       545 ~~~l~~~~  552 (607)
                      |++|++.+
T Consensus       651 ~~~L~~~~  658 (659)
T PLN03211        651 YLALRRIK  658 (659)
T ss_pred             HHHHHhcc
Confidence            99998654

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.1e-98  Score=914.00  Aligned_cols=555  Identities=25%  Similarity=0.363  Sum_probs=477.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC--
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE--   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~--   74 (607)
                      +||||||||||||+|+|+.++. ....+|+|.+||++..+.    ++.++||+|+|.+++.+||+|||.|+++++.+.  
T Consensus        93 lG~nGsGKSTLLk~LaG~~~~~-~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~  171 (1394)
T TIGR00956        93 LGRPGSGCSTLLKTIASNTDGF-HIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNR  171 (1394)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-CCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCC
Confidence            6999999999999999997421 112489999999987432    235999999999999999999999999887643  


Q ss_pred             --CCCHHHHHHH-HHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           75 --ILSVEERDEY-VNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        75 --~~~~~~~~~~-v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                        ..++++..++ ++++++.+||.+++|+.+|++.+++|||||||||+||++|+.+|+|++|||||+|||+.++.++++.
T Consensus       172 ~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~  251 (1394)
T TIGR00956       172 PDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRA  251 (1394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHH
Confidence              2344444433 5778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhhcCCCCCCCCCHHHHHHHhhccCCCch
Q 007344          152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSA  230 (607)
Q Consensus       152 L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~~~  230 (607)
                      |+++++ .|+|||+++|||+.+++++||++++|++|+++|+|++++ +.+||+++|++||++.|||||++++++.+.+..
T Consensus       252 L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~-~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~  330 (1394)
T TIGR00956       252 LKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADK-AKQYFEKMGFKCPDRQTTADFLTSLTSPAERQI  330 (1394)
T ss_pred             HHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHH-HHHHHHHcCCCCCCCCChHHHHHhccChhhhhc
Confidence            999996 499999999999889999999999999999999999988 999999999999999999999999987653211


Q ss_pred             hH--HhhhHHHHHHHHHHHHhcccchhcc----CCccc--cccc----chhhh-----hhhhcccccCCHHHHHHHHHHH
Q 007344          231 ES--VYLSQKRIDSLAESFLQRSSTILYA----SPLIS--REGY----KKSKL-----QKRTIVKKKGGWWRQFWLLLRR  293 (607)
Q Consensus       231 ~~--~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~--~~~~----~~~~~-----~~~~~~~~~~~~~~Q~~~L~~R  293 (607)
                      ..  +...+.+.++++++|+++.......    .....  ....    .....     .......+..++|+|+++|++|
T Consensus       331 ~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R  410 (1394)
T TIGR00956       331 KPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLAR  410 (1394)
T ss_pred             cccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHH
Confidence            00  1112234567888887765321000    00000  0000    00000     0111234678999999999999


Q ss_pred             HHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 007344          294 AWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKG  373 (607)
Q Consensus       294 ~~~~~~Rd~~~~~~r~~~~i~~ali~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g  373 (607)
                      ++++.+|||..+.+|+++++++|+++|++||+++++++++++|.|++||++++.+|.++.+. ..+..||+||+||+.+|
T Consensus       411 ~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~  489 (1394)
T TIGR00956       411 NFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYA  489 (1394)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeecccc
Confidence            99999999999999999999999999999999999999999999999999999999988664 45567999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007344          374 SYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPS  453 (607)
Q Consensus       374 ~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~  453 (607)
                      +|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++|+++||.++|+.++++
T Consensus       490 ~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~  569 (1394)
T TIGR00956       490 LYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAI  569 (1394)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccCCCCccchhhhhhcccHHHHHHHHHHHHhhCCCccccCC---------------CCC----------
Q 007344          454 LMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQH---------------SFD----------  508 (607)
Q Consensus       454 ~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~~---------------~~~----------  508 (607)
                      +++++++|+||++|.++||+||+|++|+||++|+|||++.|||++.+++|..               ..|          
T Consensus       570 ~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~  649 (1394)
T TIGR00956       570 LLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQD  649 (1394)
T ss_pred             HHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcc
Confidence            9999999999999999999999999999999999999999999999999951               111          


Q ss_pred             cccHHHHHh-hcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Q 007344          509 IQTGEQALE-RLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKKPKYQQL  558 (607)
Q Consensus       509 ~~~G~~~L~-~~g~~~~~~~~~~~il~~~~~~~~~l~~~~l~~~~~~~~~~  558 (607)
                      ..+|+++|+ .+||+..++|+|++|+++++++|++++++++++.++.....
T Consensus       650 ~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~~~  700 (1394)
T TIGR00956       650 YVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKG  700 (1394)
T ss_pred             cccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            358999997 69999999999999999999999999999999888655443

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=6.3e-97  Score=895.89  Aligned_cols=553  Identities=24%  Similarity=0.328  Sum_probs=470.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC---
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI---   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~---   75 (607)
                      +||||||||||||+|+|+++++.  .++|+|.+||++.++.  ++.++||+|+|.+++.+||+|||.|+++++.+..   
T Consensus       197 lGpnGSGKSTLLk~LaG~l~~~~--~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~  274 (1470)
T PLN03140        197 LGPPSSGKTTLLLALAGKLDPSL--KVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYD  274 (1470)
T ss_pred             EcCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCccc
Confidence            69999999999999999987652  4689999999987543  3569999999999999999999999988763211   


Q ss_pred             ----CCHHHH------------------------HHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhC
Q 007344           76 ----LSVEER------------------------DEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIAS  127 (607)
Q Consensus        76 ----~~~~~~------------------------~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~  127 (607)
                          .+.+++                        +..++++++.+||++|+||.+|++.+++|||||||||+||++|+.+
T Consensus       275 ~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~  354 (1470)
T PLN03140        275 LLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGP  354 (1470)
T ss_pred             chhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCC
Confidence                111111                        1246789999999999999999999999999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhhcC
Q 007344          128 PSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFG  206 (607)
Q Consensus       128 p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g  206 (607)
                      |+++||||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+|++|++|+++|+||+++ +.+||+++|
T Consensus       355 p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~-~~~yF~~lG  433 (1470)
T PLN03140        355 TKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDH-ILEFFESCG  433 (1470)
T ss_pred             CcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHH-HHHHHHHcC
Confidence            999999999999999999999999999986 589999999999889999999999999999999999988 999999999


Q ss_pred             CCCCCCCCHHHHHHHhhccCCCchhHHhh-h---HHHHHHHHHHHHhcccchhccCCcccccccchhhhhhhhcccccCC
Q 007344          207 YTCPDHVNPAEFLADLISVDYSSAESVYL-S---QKRIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGG  282 (607)
Q Consensus       207 ~~~p~~~~~ad~~~~~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (607)
                      |+||++.|||||++++++.+......... .   ....++++++|+++............+.+............++..+
T Consensus       434 f~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s  513 (1470)
T PLN03140        434 FKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVP  513 (1470)
T ss_pred             CCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCC
Confidence            99999999999999998754321110000 0   1245778888887743221110000000000000011112457889


Q ss_pred             HHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007344          283 WWRQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQ---TSIQDRMGLLQVAAINTAMAALTKTVGVF  359 (607)
Q Consensus       283 ~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~ali~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~~~~~~~~~~~~f  359 (607)
                      +|.|++.|++|+++.++||+..+..|+++.+++|+++|++||+++.++   .+.+.+.|++||++++.++.++.+ +..+
T Consensus       514 ~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~  592 (1470)
T PLN03140        514 KMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALM  592 (1470)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            999999999999999999999999999999999999999999997543   346678899999988888887754 6778


Q ss_pred             HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007344          360 PKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGA  439 (607)
Q Consensus       360 ~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i~a  439 (607)
                      +.||+||+|||+.++|++++|++|++++++|+.++.+++|++|+|||+||++++++||.|++++++..++++++++++++
T Consensus       593 ~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a  672 (1470)
T PLN03140        593 IQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS  672 (1470)
T ss_pred             HhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhcccHHHHHHHHHHHHhhCCCccccC--CCCCcccHHHHHh
Q 007344          440 MVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQ--HSFDIQTGEQALE  517 (607)
Q Consensus       440 ~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~--~~~~~~~G~~~L~  517 (607)
                      ++|+..+|+.+++++++++++|+||+||.++||+||+|++|+||++|+|||+++|||.+..+.+.  .+.+..+|+++|+
T Consensus       673 ~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~  752 (1470)
T PLN03140        673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLN  752 (1470)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988765421  1224679999999


Q ss_pred             hcCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 007344          518 RLSFGGSR--ISDTVMAQSRILLFWYCTTYLLLEKKKPKYQQ  557 (607)
Q Consensus       518 ~~g~~~~~--~~~~~~il~~~~~~~~~l~~~~l~~~~~~~~~  557 (607)
                      .+||...+  +|+|++++++++++|+++++++|++.++....
T Consensus       753 ~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~  794 (1470)
T PLN03140        753 IFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKK  794 (1470)
T ss_pred             hcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCC
Confidence            99998654  59999999999999999999999988754443

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=3.3e-96  Score=889.69  Aligned_cols=540  Identities=26%  Similarity=0.437  Sum_probs=470.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~   78 (607)
                      |||||||||||||+|+|+.+++   ..+|+|.+||.+.+..  ++.+|||+|+|.+++.+||+|||.|++.++.+...++
T Consensus       912 ~G~sGaGKTTLL~~LaG~~~~g---~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~  988 (1470)
T PLN03140        912 MGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSK  988 (1470)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCC---cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCH
Confidence            6999999999999999997543   3589999999886532  3459999999999999999999999998887655666


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344           79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~  158 (607)
                      ++++++++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++
T Consensus       989 ~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~ 1068 (1470)
T PLN03140        989 EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068 (1470)
T ss_pred             HHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence            77778899999999999999999998878999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCChhHHHhhhcceeeecC-CeeeeeCCCC---CchhhHhhhc-CCC-CCCCCCHHHHHHHhhccCCCchhH
Q 007344          159 GHTVICSIHQPRGSVYFKFDDIVLLTE-GKLVYAGPAR---DEPLAYFSRF-GYT-CPDHVNPAEFLADLISVDYSSAES  232 (607)
Q Consensus       159 g~tvi~~~H~p~~~i~~~~D~v~lL~~-G~iv~~G~~~---~~~~~~f~~~-g~~-~p~~~~~ad~~~~~~~~~~~~~~~  232 (607)
                      |+|||+++|||+.++++.||++++|++ |+++|+|++.   +.+.+||+++ |++ ||++.|||||++++++.+...   
T Consensus      1069 g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--- 1145 (1470)
T PLN03140       1069 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--- 1145 (1470)
T ss_pred             CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---
Confidence            999999999998788999999999986 8999999974   2389999997 664 999999999999997643211   


Q ss_pred             HhhhHHHHHHHHHHHHhcccchhccC---CcccccccchhhhhhhhcccccCCHHHHHHHHHHHHHHHHhcChhHHHHHH
Q 007344          233 VYLSQKRIDSLAESFLQRSSTILYAS---PLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRA  309 (607)
Q Consensus       233 ~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~  309 (607)
                           +...++++.|+++........   ....+..  ... .......+..++|+|+++|++|+++..||||.++.+|+
T Consensus      1146 -----~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~ 1217 (1470)
T PLN03140       1146 -----KLGIDFAEHYKSSSLYQRNKALVKELSTPPP--GAS-DLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRF 1217 (1470)
T ss_pred             -----cccchHHHHHhccHHHHHHHHHHHHhccCCC--Ccc-ccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHH
Confidence                 011245566655542211100   0000000  000 00112357789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 007344          310 RMSIASAIIFGSVFWRMGRSQ---TSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLI  386 (607)
Q Consensus       310 ~~~i~~ali~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l  386 (607)
                      ++++++|+++|++||++++++   .++++++|++|+++++.++..+.++++.|..||+||+||+++|+|++++|++|+++
T Consensus      1218 ~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l 1297 (1470)
T PLN03140       1218 FFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVV 1297 (1470)
T ss_pred             HHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Confidence            999999999999999999765   56778899999999998888888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcccc
Q 007344          387 AEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYV  466 (607)
Q Consensus       387 ~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i  466 (607)
                      +|+|+.++++++|++|+|||+||++++..||+|++++++..++++++|+++++++||.++|+.+++++++++++|+||++
T Consensus      1298 ~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i 1377 (1470)
T PLN03140       1298 CEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFI 1377 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccchhhhhhcccHHHHHHHHHHHHhhCCCccccCCCC--CcccHHHHH-hhcCCCCCCchhHHHHHHHHHHHHHHH
Q 007344          467 NADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSF--DIQTGEQAL-ERLSFGGSRISDTVMAQSRILLFWYCT  543 (607)
Q Consensus       467 ~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~~~~--~~~~G~~~L-~~~g~~~~~~~~~~~il~~~~~~~~~l  543 (607)
                      |+++||+||+|++|+||++|+++|++.|||++.+++|..+.  +-.+|++++ +.|||+++++|++++++++++++|+++
T Consensus      1378 ~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~ 1457 (1470)
T PLN03140       1378 PRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFI 1457 (1470)
T ss_pred             ChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999887664332  225677885 789999999999999999999999999


Q ss_pred             HHHHHHhcCcc
Q 007344          544 TYLLLEKKKPK  554 (607)
Q Consensus       544 ~~~~l~~~~~~  554 (607)
                      +++++++.+.+
T Consensus      1458 ~~~~~~~~~~q 1468 (1470)
T PLN03140       1458 FAFCIRTLNFQ 1468 (1470)
T ss_pred             HHHHHHHhhcc
Confidence            99999887654

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=8.6e-94  Score=871.06  Aligned_cols=539  Identities=26%  Similarity=0.385  Sum_probs=460.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      |||||||||||||+|+|+.+++  ...+|+|.+||++.... ++++|||+|+|.+++.+||+|||.|++.++.+...+++
T Consensus       795 ~G~sGaGKSTLL~~Lag~~~~g--~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~  872 (1394)
T TIGR00956       795 MGASGAGKTTLLNVLAERVTTG--VITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKS  872 (1394)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC--CcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHH
Confidence            6999999999999999998642  11379999999987533 45699999999999999999999999988876556677


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS-VIYADEPTTGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~-illLDEPtsGLD~~~~~~i~~~L~~la~~  158 (607)
                      +++++++++++.+||.+++|+.+|+. ..+|||||||||+||++|+.+|+ ||||||||+|||+.++..+++.|++++++
T Consensus       873 ~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~  951 (1394)
T TIGR00956       873 EKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH  951 (1394)
T ss_pred             HHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc
Confidence            77889999999999999999998863 34899999999999999999997 99999999999999999999999999988


Q ss_pred             CCeEEEEecCChhHHHhhhcceeeecCC-eeeeeCCCCC---chhhHhhhcCC-CCCCCCCHHHHHHHhhccCCCchhHH
Q 007344          159 GHTVICSIHQPRGSVYFKFDDIVLLTEG-KLVYAGPARD---EPLAYFSRFGY-TCPDHVNPAEFLADLISVDYSSAESV  233 (607)
Q Consensus       159 g~tvi~~~H~p~~~i~~~~D~v~lL~~G-~iv~~G~~~~---~~~~~f~~~g~-~~p~~~~~ad~~~~~~~~~~~~~~~~  233 (607)
                      |+|||+++|||+..+++.||++++|++| +++|+|++++   .+.+||++.|+ +||++.|||||++|+++.+.....  
T Consensus       952 g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~-- 1029 (1394)
T TIGR00956       952 GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHA-- 1029 (1394)
T ss_pred             CCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccch--
Confidence            9999999999987788889999999987 9999999843   27899999996 999999999999999875432211  


Q ss_pred             hhhHHHHHHHHHHHHhcccchhccC---CcccccccchhhhhhhhcccccCCHHHHHHHHHHHHHHHHhcChhHHHHHHH
Q 007344          234 YLSQKRIDSLAESFLQRSSTILYAS---PLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRAR  310 (607)
Q Consensus       234 ~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~  310 (607)
                            .+++.+.|+++........   ...................++..+||+|+++|++|++++.||||.++.+|++
T Consensus      1030 ------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~ 1103 (1394)
T TIGR00956      1030 ------NQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFF 1103 (1394)
T ss_pred             ------hccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence                  1234455544432111000   0000000000000001123577899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCCCChHHHHHHHHHHHH
Q 007344          311 MSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIV-DRERAKGSYALGPYLLSKLIAEI  389 (607)
Q Consensus       311 ~~i~~ali~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~-~rE~~~g~Y~~~~y~la~~l~~l  389 (607)
                      +++++|+++|++||++++++.++++|+|++|+.+++..+. ...+++.|+.||.+| +||+.+|+|++++|++|++++|+
T Consensus      1104 ~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~el 1182 (1394)
T TIGR00956      1104 LTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEI 1182 (1394)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887776655 446788898999886 89999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhccccccccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Q 007344          390 PVGAAFPLMFGAVLYPMARLHPTLSR-------FGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFG  462 (607)
Q Consensus       390 p~~~~~~~if~~i~Y~~~gl~~~~~~-------F~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~  462 (607)
                      |+.++.+++|++|+|||+||++++..       |++|++++++..++++++|+++++++|+..+|+.+++++++++++|+
T Consensus      1183 P~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~ 1262 (1394)
T TIGR00956      1183 PYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFC 1262 (1394)
T ss_pred             HHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999988765       99999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCccchhhhhhcccHHHHHHHHHHHHhhCCCccccCCC------------------------------------
Q 007344          463 GYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHS------------------------------------  506 (607)
Q Consensus       463 Gf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~~~------------------------------------  506 (607)
                      ||++++++||.||+|++|+||++|+++|++.|||++.++.|.+.                                    
T Consensus      1263 G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~ 1342 (1394)
T TIGR00956      1263 GVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDS 1342 (1394)
T ss_pred             cccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCC
Confidence            99999999999999999999999999999999999999877531                                    


Q ss_pred             --CC-cccHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007344          507 --FD-IQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKK  552 (607)
Q Consensus       507 --~~-~~~G~~~L~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~l~~~~  552 (607)
                        +| +.+|+++|+.+|++.+++|+|+++++++++++ ++++++++++.
T Consensus      1343 C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~ 1390 (1394)
T TIGR00956      1343 CSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLA 1390 (1394)
T ss_pred             CCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheEE
Confidence              11 35999999999999999999999999999999 77777777653

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1e-92  Score=812.50  Aligned_cols=540  Identities=27%  Similarity=0.423  Sum_probs=461.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~   78 (607)
                      ||+||||||||||+||||...+   .++|+|.+||.|.++.  +|.+|||.|+|.|.+.+||||.|.|+|.+|+|...+.
T Consensus       823 MG~SGAGKTTLLdvLA~R~t~G---~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~  899 (1391)
T KOG0065|consen  823 MGESGAGKTTLLDVLAGRKTGG---YIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSD  899 (1391)
T ss_pred             hcCCCCchHHHHHHHhcCcccc---eEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCH
Confidence            7999999999999999997543   6899999999998743  4679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP-SVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p-~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      +++.+.|+++++.++|++++|..||+.- +|||.+||||++||.+|+.+| .||||||||||||+.+|..|++.+|++++
T Consensus       900 ~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~  978 (1391)
T KOG0065|consen  900 EEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD  978 (1391)
T ss_pred             HHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999976 999999999999999999999 89999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhHHHhhhcceeeec-CCeeeeeCCCCCc---hhhHhhhcC-CCCCCCCCHHHHHHHhhccCCCchhH
Q 007344          158 DGHTVICSIHQPRGSVYFKFDDIVLLT-EGKLVYAGPARDE---PLAYFSRFG-YTCPDHVNPAEFLADLISVDYSSAES  232 (607)
Q Consensus       158 ~g~tvi~~~H~p~~~i~~~~D~v~lL~-~G~iv~~G~~~~~---~~~~f~~~g-~~~p~~~~~ad~~~~~~~~~~~~~~~  232 (607)
                      +|+||+||+|||+..+++.||++++|+ +|++||+|+..+.   +.+||++.| .+||...|||||++|+++......- 
T Consensus       979 tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~- 1057 (1391)
T KOG0065|consen  979 TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEASL- 1057 (1391)
T ss_pred             cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhccccccccc-
Confidence            999999999999999999999999995 7899999999874   567999976 8999999999999999875432211 


Q ss_pred             HhhhHHHHHHHHHHHHhcccchhccCCccc-ccccchhhhhhhhcccccCCHHHHHHHHHHHHHHHHhcChhHHHHHHHH
Q 007344          233 VYLSQKRIDSLAESFLQRSSTILYASPLIS-REGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRARM  311 (607)
Q Consensus       233 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~  311 (607)
                             -.++++.|+++.......+...- ..+............++..|+|.|+..+++|++..+||+|.++.+|++.
T Consensus      1058 -------~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~ 1130 (1391)
T KOG0065|consen 1058 -------SVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFAL 1130 (1391)
T ss_pred             -------CccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence                   11566677666543221110000 0000000011112345788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHH
Q 007344          312 SIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPV  391 (607)
Q Consensus       312 ~i~~ali~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~  391 (607)
                      .++.|+++|+.||++|++..+.+|.+|++|..+++..........+.+..||.+++||+.+|+||+.+|++|.+++|+|+
T Consensus      1131 ~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~ 1210 (1391)
T KOG0065|consen 1131 TIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPY 1210 (1391)
T ss_pred             HHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888776655444445677788999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCc
Q 007344          392 GAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNT  471 (607)
Q Consensus       392 ~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~i  471 (607)
                      .++++++|.+|+|+++|+..++.+|++|++.+++..++.+.+|+++.+++||.++|..+.+.+++++.+|||+++|++.|
T Consensus      1211 ~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~i 1290 (1391)
T KOG0065|consen 1211 NLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLI 1290 (1391)
T ss_pred             HHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhcccHHHHHHHHHHHHhhCCCccccCCCC--------CcccHHHHHhhcC----CCCCCchhHHHHHHHHHHH
Q 007344          472 PIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSF--------DIQTGEQALERLS----FGGSRISDTVMAQSRILLF  539 (607)
Q Consensus       472 p~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~~~~--------~~~~G~~~L~~~g----~~~~~~~~~~~il~~~~~~  539 (607)
                      |.||+|+||+||+.|..++++...+++.+..|....        +...|+..-..+|    |..+......++...+.++
T Consensus      1291 P~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~ 1370 (1391)
T KOG0065|consen 1291 PKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVA 1370 (1391)
T ss_pred             cceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehH
Confidence            999999999999999999999999999998885322        2344555446677    5444444444455556666


Q ss_pred             HHHHHHHHHHhcC
Q 007344          540 WYCTTYLLLEKKK  552 (607)
Q Consensus       540 ~~~l~~~~l~~~~  552 (607)
                      +.+++.+..++.+
T Consensus      1371 ~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1371 DAFLAAFNIKYLN 1383 (1391)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666665543

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.6e-91  Score=800.90  Aligned_cols=560  Identities=28%  Similarity=0.404  Sum_probs=485.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC---
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI---   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~---   75 (607)
                      +||+||||||||++|+|.++...  ...|+|.+||.+.++.  ++.++|++|+|.|+|.|||+|+|.|+++++.+..   
T Consensus       147 LG~pgsG~ttllkal~g~~~~~~--~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~  224 (1391)
T KOG0065|consen  147 LGPPGSGKTTLLKALAGKLDNFL--KSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD  224 (1391)
T ss_pred             ecCCCCchHHHHHHHhCCCcccc--cCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc
Confidence            59999999999999999987653  3478999999988764  3459999999999999999999999999998732   


Q ss_pred             -CCHHHHH-HHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           76 -LSVEERD-EYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        76 -~~~~~~~-~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       .++.++. +..+.+++.+||++|+||.+||..+||+||||||||+||.+++.+++++++||+|+|||+.++.++++.||
T Consensus       225 ~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr  304 (1391)
T KOG0065|consen  225 EVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALR  304 (1391)
T ss_pred             cccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHH
Confidence             2233322 26789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhhcCCCCCCCCCHHHHHHHhhccCCCc---
Q 007344          154 QLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSS---  229 (607)
Q Consensus       154 ~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~~---  229 (607)
                      ++++ .+.|+++++|||+++++++||+|++|.+|+++|+||.++ +++||+++||.||++.++|||+.++++.....   
T Consensus       305 ~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~-~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~  383 (1391)
T KOG0065|consen  305 QLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDE-VLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYW  383 (1391)
T ss_pred             HHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHH-HHHHHHhcCccCCCccCHHHHHHHhhcCccccccc
Confidence            9985 578999999999999999999999999999999999998 99999999999999999999999998721110   


Q ss_pred             -hhHHhhhHHHHHHHHHHHHhcccchhccCCcccccccchhhhhhhhcccccCCHHHHHHHHHHHHHHHHhcChhHHHHH
Q 007344          230 -AESVYLSQKRIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVR  308 (607)
Q Consensus       230 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r  308 (607)
                       .+.........+++.+.|.++............+.+............++..+.|.|+..|++|.|+.+.||..++..+
T Consensus       384 ~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~  463 (1391)
T KOG0065|consen  384 NKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFK  463 (1391)
T ss_pred             cccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhH
Confidence             0000111223467888887775432211111111111111112223456888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 007344          309 ARMSIASAIIFGSVFWRMG-RSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIA  387 (607)
Q Consensus       309 ~~~~i~~ali~G~~f~~~~-~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~  387 (607)
                      +++.+++|+++|++|++++ .+..+...|.|++||++++.++.++.+.-..| +.|+||+|||...+|++++|.++.+++
T Consensus       464 ~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~-~~~pv~~Khr~~~fY~p~A~al~s~l~  542 (1391)
T KOG0065|consen  464 TVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTF-QRLPVFYKHRDLSFYPPWAEALASTLL  542 (1391)
T ss_pred             HHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHH-hhcchHHHhhcccccChHHHHHHHHHH
Confidence            9999999999999999999 77788999999999999999999998866655 779999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccccC
Q 007344          388 EIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVN  467 (607)
Q Consensus       388 ~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~  467 (607)
                      ++|+.++.+++|.+|+||++||.+++++||.|++++++.++|++++++++++++++...|+.++++.++...+++||+||
T Consensus       543 ~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip  622 (1391)
T KOG0065|consen  543 KIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIP  622 (1391)
T ss_pred             hCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccchhhhhhcccHHHHHHHHHHHHhhCCCccccC------------CCCC----------cccHHHHH-hhcCCCCC
Q 007344          468 ADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQ------------HSFD----------IQTGEQAL-ERLSFGGS  524 (607)
Q Consensus       468 ~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~------------~~~~----------~~~G~~~L-~~~g~~~~  524 (607)
                      .++||+||+|++|+||+.|+||++++|||++..++|.            +..|          +..|++++ .+|++.+.
T Consensus       623 ~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~  702 (1391)
T KOG0065|consen  623 KKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYK  702 (1391)
T ss_pred             ccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccc
Confidence            9999999999999999999999999999999999997            2221          44566666 35777899


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCC
Q 007344          525 RISDTVMAQSRILLFWYCTTYLLLEKKKPKYQQLELPNPE  564 (607)
Q Consensus       525 ~~~~~~~il~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~  564 (607)
                      ++|+|++|++|+.++|.++..+++.+.++...+.+.++-+
T Consensus       703 ~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~  742 (1391)
T KOG0065|consen  703 WYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFK  742 (1391)
T ss_pred             eeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeec
Confidence            9999999999999999999999999999987777665553

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.5e-46  Score=356.79  Aligned_cols=199  Identities=34%  Similarity=0.512  Sum_probs=176.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||||||+|+.+++     +|+|.++|.++..      .++++|+|+|+..|||++||.||+..+...-  .
T Consensus        34 iGpSGSGKSTlLRclN~LE~~~-----~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~  106 (240)
T COG1126          34 IGPSGSGKSTLLRCLNGLEEPD-----SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--K  106 (240)
T ss_pred             ECCCCCCHHHHHHHHHCCcCCC-----CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--c
Confidence            6999999999999999999988     8999999976532      2457999999999999999999999976532  3


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ..++++.++++.++|+++||.+.+|     .++..|||||||||+|||||+.+|+++++|||||.|||+...++++.+++
T Consensus       107 ~~~k~eA~~~A~~lL~~VGL~~ka~-----~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~  181 (240)
T COG1126         107 KLSKAEAREKALELLEKVGLADKAD-----AYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD  181 (240)
T ss_pred             CCCHHHHHHHHHHHHHHcCchhhhh-----hCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHH
Confidence            4678889999999999999977665     47889999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhhcCCCCCCCCCHHHHHHH
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLAD  221 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~  221 (607)
                      ||++|.|.||+||+.. ...+.+|||++|++|+++..|++++    +     |..|.+.-..+|+..
T Consensus       182 LA~eGmTMivVTHEM~-FAr~VadrviFmd~G~iie~g~p~~----~-----f~~p~~~R~~~FL~~  238 (240)
T COG1126         182 LAEEGMTMIIVTHEMG-FAREVADRVIFMDQGKIIEEGPPEE----F-----FDNPKSERTRQFLSK  238 (240)
T ss_pred             HHHcCCeEEEEechhH-HHHHhhheEEEeeCCEEEEecCHHH----H-----hcCCCCHHHHHHHHh
Confidence            9999999999999964 7888999999999999999997765    3     455776667777654

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.7e-43  Score=351.21  Aligned_cols=200  Identities=29%  Similarity=0.416  Sum_probs=177.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +|.||||||||+|+|+++..|+     +|+|.++|.++...        +++||+++|+..|+...||.||+.|..++. 
T Consensus        38 IG~SGAGKSTLiR~iN~Le~Pt-----sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia-  111 (339)
T COG1135          38 IGYSGAGKSTLLRLINLLERPT-----SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA-  111 (339)
T ss_pred             EcCCCCcHHHHHHHHhccCCCC-----CceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc-
Confidence            6999999999999999999998     89999999876542        356999999999999999999999998875 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..++++++++|.++|+.+||++.+|     .++.+|||||||||+|||||+.+|+||++|||||.|||.+...|+++|
T Consensus       112 --g~~k~ei~~RV~elLelVgL~dk~~-----~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL  184 (339)
T COG1135         112 --GVPKAEIKQRVAELLELVGLSDKAD-----RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELL  184 (339)
T ss_pred             --CCCHHHHHHHHHHHHHHcCChhhhc-----cCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHH
Confidence              3678999999999999999976554     578899999999999999999999999999999999999999999999


Q ss_pred             HHHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhhcCCCCCCCCCHHHHHHHhh
Q 007344          153 RQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLI  223 (607)
Q Consensus       153 ~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~  223 (607)
                      +++. +-|.||+++||++ +-+...||||.+|++|++++.|+..+.         |..|.+.-+.+|+.+..
T Consensus       185 ~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~v---------F~~Pk~~~t~~fi~~~~  246 (339)
T COG1135         185 KDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEV---------FANPKHAITQEFIGETL  246 (339)
T ss_pred             HHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHh---------hcCcchHHHHHHHHhhc
Confidence            9997 5699999999996 578999999999999999999998773         34566666666665544

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=6.1e-42  Score=355.27  Aligned_cols=187  Identities=39%  Similarity=0.579  Sum_probs=166.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+|+|+|+.+|+     +|+|.++|.+....    ++++||++|++.+++.+||+|+|.|.+.++...  
T Consensus        37 lG~NGAGKTTllk~l~gl~~p~-----~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~--  109 (293)
T COG1131          37 LGPNGAGKTTLLKILAGLLKPT-----SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS--  109 (293)
T ss_pred             ECCCCCCHHHHHHHHhCCcCCC-----ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC--
Confidence            6999999999999999999987     89999999887542    356999999999999999999999999988543  


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                       .+..+++++++++.+||.+.+     ++++++||+||||||+||+||+.+|+++||||||+||||.++.++.+.|++++
T Consensus       110 -~~~~~~~~~~~l~~~~L~~~~-----~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~  183 (293)
T COG1131         110 -KEEAEERIEELLELFGLEDKA-----NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA  183 (293)
T ss_pred             -hhHHHHHHHHHHHHcCCchhh-----CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH
Confidence             245667899999999997633     45678999999999999999999999999999999999999999999999999


Q ss_pred             hcC-CeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHh
Q 007344          157 QDG-HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYF  202 (607)
Q Consensus       157 ~~g-~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f  202 (607)
                      ++| +||++|||++. ++..+||+|++|++|++++.|++++ ....+
T Consensus       184 ~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~-l~~~~  228 (293)
T COG1131         184 KEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEE-LKEKF  228 (293)
T ss_pred             hCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHH-HHHhh
Confidence            887 79999999975 7888899999999999999997766 44444

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.2e-42  Score=354.58  Aligned_cols=196  Identities=29%  Similarity=0.446  Sum_probs=175.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|||+.+++     +|+|.++|++.+..   .|.+|+|+|+..+||++||+||+.|+.+.+   ..+
T Consensus        35 lGPSGcGKSTlLr~IAGLe~~~-----~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~  106 (338)
T COG3839          35 LGPSGCGKSTLLRMIAGLEEPT-----SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVP  106 (338)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCc
Confidence            6999999999999999999998     89999999998763   467999999999999999999999999875   357


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      +++.+++|+++.+.|+|.+..     ++++++|||||||||+|||||+++|++++||||+|+||+..+..+...++++.+
T Consensus       107 k~ei~~rV~eva~~L~l~~lL-----~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~  181 (338)
T COG3839         107 KAEIDKRVKEVAKLLGLEHLL-----NRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE  181 (338)
T ss_pred             hHHHHHHHHHHHHHcCChhHH-----hcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH
Confidence            889999999999999996555     557889999999999999999999999999999999999999999999999974


Q ss_pred             -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhhcCCCCCCCCCHHHHH
Q 007344          158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFL  219 (607)
Q Consensus       158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~  219 (607)
                       -|.|+|.+|||. .++..++||+.+|++|++...|++.+.         |..|.+.-.|+|+
T Consensus       182 ~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~el---------y~~P~n~fVA~Fi  234 (338)
T COG3839         182 RLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLEL---------YERPANLFVAGFI  234 (338)
T ss_pred             hcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHH---------hhCccchhhhhhc
Confidence             588999999996 578899999999999999999998873         3445555555554

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=3.3e-41  Score=331.80  Aligned_cols=174  Identities=37%  Similarity=0.531  Sum_probs=153.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      |||||||||||||+|+|+..|+     +|+|.++|.++...         ++++|||+|+..|+|++||+||+.+.+.+.
T Consensus        37 ~GpSGSGKSTLLniig~ld~pt-----~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~  111 (226)
T COG1136          37 VGPSGSGKSTLLNLLGGLDKPT-----SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA  111 (226)
T ss_pred             ECCCCCCHHHHHHHHhcccCCC-----CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc
Confidence            6999999999999999999997     89999999877542         235999999999999999999999987664


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                      .   .+..+.+++++++++.+||.+..+    +.++.+|||||||||+|||||+.+|++++.||||.+||+.++..|+++
T Consensus       112 ~---~~~~~~~~~~~~l~~~lgl~~~~~----~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~l  184 (226)
T COG1136         112 G---KSAGRRKRAAEELLEVLGLEDRLL----KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL  184 (226)
T ss_pred             C---CChhHHHHHHHHHHHhcCChhhhc----cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHH
Confidence            3   222256778999999999975443    246889999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCee
Q 007344          152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       152 L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i  188 (607)
                      |++++++ |+|||++||||  .+...|||++.|.+|++
T Consensus       185 l~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~  220 (226)
T COG1136         185 LRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI  220 (226)
T ss_pred             HHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence            9999855 99999999997  57788999999999984

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.4e-41  Score=332.12  Aligned_cols=172  Identities=33%  Similarity=0.496  Sum_probs=156.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||||+|+|+.+++     +|+|.++|+++......+|||+|++.++|-+||+||+.++...+.   .++++
T Consensus        35 lGpSGcGKSTLLriiAGL~~p~-----~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e  106 (248)
T COG1116          35 LGPSGCGKSTLLRLIAGLEKPT-----SGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAE  106 (248)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHh
Confidence            6999999999999999999998     899999999986666789999999999999999999999988753   45677


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g  159 (607)
                      .++++++.|+.+||.+..     ++++++|||||||||+|||||+.+|++|+||||++.||+.++..+-+.|.++. +.+
T Consensus       107 ~~~~a~~~L~~VgL~~~~-----~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~  181 (248)
T COG1116         107 ARERAKELLELVGLAGFE-----DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR  181 (248)
T ss_pred             HHHHHHHHHHHcCCcchh-----hcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC
Confidence            777999999999996554     56899999999999999999999999999999999999999999999999986 678


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEG  186 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G  186 (607)
                      +||+++|||.. +...++|||++|+++
T Consensus       182 ~TvllVTHdi~-EAv~LsdRivvl~~~  207 (248)
T COG1116         182 KTVLLVTHDVD-EAVYLADRVVVLSNR  207 (248)
T ss_pred             CEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence            99999999975 667789999999884

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-41  Score=331.24  Aligned_cols=184  Identities=29%  Similarity=0.444  Sum_probs=169.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|||||||||+||+|.++++|+     +|+|.+||+++++.     +++||||-|+..|||++||.||+.+...+.   .
T Consensus        33 iGpSGsGKTTtLkMINrLiept-----~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~  104 (309)
T COG1125          33 IGPSGSGKTTTLKMINRLIEPT-----SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---G  104 (309)
T ss_pred             ECCCCCcHHHHHHHHhcccCCC-----CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---C
Confidence            6999999999999999999998     89999999998763     467999999999999999999999988765   4


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      +++++++++++++++.+||..   ....++++++|||||+|||.+||||+.+|++|++|||+++|||.++.++-+.++++
T Consensus       105 w~k~~i~~r~~ELl~lvgL~p---~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~l  181 (309)
T COG1125         105 WDKERIKKRADELLDLVGLDP---SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL  181 (309)
T ss_pred             CCHHHHHHHHHHHHHHhCCCH---HHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHH
Confidence            678899999999999999953   24667899999999999999999999999999999999999999999999999999


Q ss_pred             H-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          156 A-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       156 a-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      . +-|+|||++|||. .+..+++|||.+|++|+++..++|++
T Consensus       182 q~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~  222 (309)
T COG1125         182 QKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDE  222 (309)
T ss_pred             HHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHH
Confidence            7 5699999999995 58889999999999999999999876

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.7e-41  Score=328.63  Aligned_cols=184  Identities=31%  Similarity=0.456  Sum_probs=166.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      |||||||||||||+|.|+++|+     +|+|.++|+++...        ++++|+++|+-.||..+||+||+.|..+-+ 
T Consensus        40 iGgSGsGKStlLr~I~Gll~P~-----~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~-  113 (263)
T COG1127          40 LGGSGSGKSTLLRLILGLLRPD-----KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH-  113 (263)
T ss_pred             ECCCCcCHHHHHHHHhccCCCC-----CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh-
Confidence            6999999999999999999998     89999999987543        346999999999999999999999977643 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                       ...+++..++.+..-|+.+||..    .+++.++.+||||||||++|||||+.+|+++|+||||+||||.++..+.+++
T Consensus       114 -~~lp~~~i~~lv~~KL~~VGL~~----~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI  188 (263)
T COG1127         114 -TKLPESLIRELVLMKLELVGLRG----AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELI  188 (263)
T ss_pred             -ccCCHHHHHHHHHHHHHhcCCCh----hhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHH
Confidence             34678888889999999999953    3356789999999999999999999999999999999999999999999999


Q ss_pred             HHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++.+ -|.|++++|||. .+++..|||+++|.+|++++.|++++
T Consensus       189 ~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~e  232 (263)
T COG1127         189 RELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPEE  232 (263)
T ss_pred             HHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHHH
Confidence            99985 488999999996 58999999999999999999999876

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.2e-41  Score=337.79  Aligned_cols=185  Identities=31%  Similarity=0.486  Sum_probs=167.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCe---eCCC---ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK---PSSN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~---~~~~---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +|||||||||||++|||++.|+     .|.|.+||+   +.++   ..++||||+|+..+|++|||.+|+.|+.+.+ ..
T Consensus        34 lGpSGaGKsTlLRiIAGLe~p~-----~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~  107 (345)
T COG1118          34 LGPSGAGKSTLLRIIAGLETPD-----AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KE  107 (345)
T ss_pred             ECCCCCcHHHHHHHHhCcCCCC-----CceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccccc-cc
Confidence            5999999999999999999998     899999999   4443   2467999999999999999999999999876 23


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ..++.+++.+|+++|+.+.|++     .+++++..|||||||||++||||+..|++|+||||+++||..-+.++-+-|++
T Consensus       108 ~p~~~~~r~rv~elL~lvqL~~-----la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~  182 (345)
T COG1118         108 RPSEAEIRARVEELLRLVQLEG-----LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK  182 (345)
T ss_pred             CCChhhHHHHHHHHHHHhcccc-----hhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHH
Confidence            4556788899999999999954     45668999999999999999999999999999999999999999999999999


Q ss_pred             HHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCc
Q 007344          155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE  197 (607)
Q Consensus       155 la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~  197 (607)
                      +.++ |.|++++|||+ .++++++|||++|++|+|...|+++++
T Consensus       183 ~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev  225 (345)
T COG1118         183 LHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEV  225 (345)
T ss_pred             HHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHH
Confidence            9854 99999999996 589999999999999999999998873

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2.8e-41  Score=352.36  Aligned_cols=199  Identities=30%  Similarity=0.472  Sum_probs=177.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|||+..|+     +|+|.++|+++...   +|.+|+|+|+..|||+|||+||+.|+.+.+  +...
T Consensus        37 LGPSGcGKTTlLR~IAGfe~p~-----~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~  109 (352)
T COG3842          37 LGPSGCGKTTLLRMIAGFEQPS-----SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLK  109 (352)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCC
Confidence            6999999999999999999998     89999999998653   467999999999999999999999998843  2345


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-  156 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-  156 (607)
                      +++++++|+++++.++|++.     +++++.+|||||||||+|||||+.+|++|+||||.|+||...+.++..-|+++. 
T Consensus       110 ~~~i~~rv~e~L~lV~L~~~-----~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~  184 (352)
T COG3842         110 KAEIKARVEEALELVGLEGF-----ADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR  184 (352)
T ss_pred             HHHHHHHHHHHHHHcCchhh-----hhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHH
Confidence            67788999999999999654     456789999999999999999999999999999999999999999999999997 


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhhcCCCCCCCCCHHHHHHH
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLAD  221 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~  221 (607)
                      +.|.|.|++|||. .+...++|||.+|++|++...|++++.         |..|.+.-.|+|+-+
T Consensus       185 ~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei---------Y~~P~~~fVA~FiG~  239 (352)
T COG3842         185 ELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI---------YERPATRFVADFIGE  239 (352)
T ss_pred             hcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH---------hhCcchHHHHHHhCc
Confidence            5699999999995 578899999999999999999999873         456777777888754

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=3.8e-41  Score=337.47  Aligned_cols=186  Identities=37%  Similarity=0.477  Sum_probs=162.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||||+|+|+++|.     +|+|.++|+++...     .+++|||||.......+||+|.+.++...+....
T Consensus        34 iGpNG~GKSTLLk~l~g~l~p~-----~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~  108 (258)
T COG1120          34 LGPNGSGKSTLLKCLAGLLKPK-----SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF  108 (258)
T ss_pred             ECCCCCCHHHHHHHHhccCCCC-----CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccc
Confidence            6999999999999999999987     89999999988653     3579999999988889999999998765432211


Q ss_pred             C-CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           76 L-SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        76 ~-~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      . ..++.++.+++.|+.+|+.+.++.     .+.+|||||||||.|||||+++|++|+||||||.||...+.++++++++
T Consensus       109 ~~~~~~D~~~v~~aL~~~~~~~la~r-----~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~  183 (258)
T COG1120         109 GRPSKEDEEIVEEALELLGLEHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD  183 (258)
T ss_pred             cCCCHhHHHHHHHHHHHhCcHHHhcC-----cccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHH
Confidence            1 123334579999999999877765     4668999999999999999999999999999999999999999999999


Q ss_pred             HH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCc
Q 007344          155 LA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE  197 (607)
Q Consensus       155 la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~  197 (607)
                      ++ ++|+|||+++||++ ...++||++++|++|++++.|+++++
T Consensus       184 l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~ev  226 (258)
T COG1120         184 LNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEV  226 (258)
T ss_pred             HHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchh
Confidence            99 56999999999986 67788999999999999999999874

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.6e-40  Score=328.90  Aligned_cols=183  Identities=32%  Similarity=0.544  Sum_probs=157.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc--ceEEEEccCC---CCCCCCCHHHHHHHHHHccCC--
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA--YKFAYVRQED---LFFSQLTVRETLSLAAELQLP--   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~--~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~--   73 (607)
                      +||||||||||+|+|.|+++|.     +|+|.++|.+....+  .+||||||..   .-|| +||+|.+..+...+..  
T Consensus        36 iGPNGaGKSTLlK~iLGll~p~-----~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~  109 (254)
T COG1121          36 IGPNGAGKSTLLKAILGLLKPS-----SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWF  109 (254)
T ss_pred             ECCCCCCHHHHHHHHhCCCcCC-----cceEEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCccccccc
Confidence            6999999999999999999987     899999999876654  6799999964   3344 6999999887443321  


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                      +..+++ .++.++++|+++|+.+.+|..+     .+|||||+|||-|||||+++|++|+|||||+|+|+.++..++++|+
T Consensus       110 ~~~~~~-d~~~v~~aL~~Vgm~~~~~r~i-----~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~  183 (254)
T COG1121         110 RRLNKK-DKEKVDEALERVGMEDLRDRQI-----GELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLK  183 (254)
T ss_pred             ccccHH-HHHHHHHHHHHcCchhhhCCcc-----cccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence            122333 3678999999999987777655     5799999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCc
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE  197 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~  197 (607)
                      +++++|+||++++||+. .+...||+|++|+ +++++.|++++.
T Consensus       184 ~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln-~~~~~~G~~~~~  225 (254)
T COG1121         184 ELRQEGKTVLMVTHDLG-LVMAYFDRVICLN-RHLIASGPPEEV  225 (254)
T ss_pred             HHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc-CeeEeccChhhc
Confidence            99988999999999975 7889999999995 678899999874

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-40  Score=316.54  Aligned_cols=204  Identities=27%  Similarity=0.404  Sum_probs=176.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      |||||||||||||++..+....++..++|+|.++|+++...       ++++|+|+|.+..|| +|++||+.|+.+++..
T Consensus        39 IGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~  117 (253)
T COG1117          39 IGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGI  117 (253)
T ss_pred             ECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhcc
Confidence            79999999999999999988777788999999999987543       467999999999999 8999999999987643


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                        .+ ++.+++|++.|+...|.+.-.... ++...+||||||||++|||+|+.+|+||+||||||+|||.+..+|-+++.
T Consensus       118 --~~-~~ldeiVe~sLk~AaLWdEVKDrL-~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~  193 (253)
T COG1117         118 --KD-KELDEIVESSLKKAALWDEVKDRL-HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELIT  193 (253)
T ss_pred             --ch-HHHHHHHHHHHHHhHhHHHhHHHh-hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHH
Confidence              22 678889999999999975332222 34577899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhhcCCCCCCCCCHHHHHH
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLA  220 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~  220 (607)
                      +|+ +.-|||++||++. ...+..|+..++..|+++++|++++.         |..|.+.-+.||+.
T Consensus       194 eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~g~T~~i---------F~~P~~~~TedYis  249 (253)
T COG1117         194 ELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEFGPTDKI---------FTNPKHKRTEDYIS  249 (253)
T ss_pred             HHH-hccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEEcCHHhh---------hcCccHHHHHHHhc
Confidence            998 4689999999975 67788999999999999999998762         45688888888764

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=3.3e-40  Score=307.56  Aligned_cols=182  Identities=29%  Similarity=0.470  Sum_probs=161.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|+|.+.|.     +|+|.+||++....   .+-+++++|+..+|.+|||.+|+.++....+  ..+
T Consensus        31 ~GpSGaGKSTLLnLIAGF~~P~-----~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL~  103 (231)
T COG3840          31 LGPSGAGKSTLLNLIAGFETPA-----SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KLN  103 (231)
T ss_pred             ECCCCccHHHHHHHHHhccCCC-----CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc--ccC
Confidence            6999999999999999999987     89999999987543   3569999999999999999999998765322  123


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-  156 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-  156 (607)
                       ++.+++++.++.++||..+.     ++.+.+|||||||||++||+|+++-+||+||||+|.|||..+.++..++.+++ 
T Consensus       104 -a~~r~~v~~aa~~vGl~~~~-----~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~  177 (231)
T COG3840         104 -AEQREKVEAAAAQVGLAGFL-----KRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCD  177 (231)
T ss_pred             -HHHHHHHHHHHHHhChhhHh-----hhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHH
Confidence             44566799999999996655     45678999999999999999999999999999999999999999999999998 


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++.|++++||+|+ ++..+.|+++++++||+.+.|+.++
T Consensus       178 E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~  216 (231)
T COG3840         178 ERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQE  216 (231)
T ss_pred             hhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHH
Confidence            56889999999986 6788899999999999999998765

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.8e-39  Score=304.93  Aligned_cols=179  Identities=30%  Similarity=0.396  Sum_probs=162.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||||+|.+..+|+     .|+|.+||.++.+.        +++||.|+||..+.++.||.||+.|+.+.. 
T Consensus        34 ~GpSGAGKSTllkLi~~~e~pt-----~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~-  107 (223)
T COG2884          34 TGPSGAGKSTLLKLIYGEERPT-----RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI-  107 (223)
T ss_pred             ECCCCCCHHHHHHHHHhhhcCC-----CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc-
Confidence            5999999999999999999998     89999999987653        357999999999999999999999998875 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..+.++.+++|.++|+.+||.+.++     ..+.+|||||||||+||||++.+|++|+.||||-+|||..+.+|++++
T Consensus       108 --G~~~~~i~~rV~~~L~~VgL~~k~~-----~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lf  180 (223)
T COG2884         108 --GKPPREIRRRVSEVLDLVGLKHKAR-----ALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLF  180 (223)
T ss_pred             --CCCHHHHHHHHHHHHHHhccchhhh-----cCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHH
Confidence              3567888999999999999976654     467899999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCC
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP  193 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~  193 (607)
                      .++.+.|.||++.||+ ..-+..+-.|++.|++|+++....
T Consensus       181 eeinr~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~~  220 (223)
T COG2884         181 EEINRLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDES  220 (223)
T ss_pred             HHHhhcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEeccc
Confidence            9999999999999999 456777778899999999987543

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=4e-40  Score=311.71  Aligned_cols=182  Identities=32%  Similarity=0.489  Sum_probs=167.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +|||||||||+|++|++++.|+     +|+|+++|.+..+.    +++||.++.+.-++..||++|||.|.+++.   .+
T Consensus        34 LG~NGAGKTT~LRmiatlL~P~-----~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l  105 (245)
T COG4555          34 LGENGAGKTTLLRMIATLLIPD-----SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GL  105 (245)
T ss_pred             EcCCCCCchhHHHHHHHhccCC-----CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hh
Confidence            5999999999999999999998     89999999886543    467999998889999999999999999986   46


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      +..+.+++++++.+.|+|.++.|+.+|     ++|.|+||||+|||||+++|++++|||||||||..+...+.+.++++.
T Consensus       106 ~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k  180 (245)
T COG4555         106 SRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK  180 (245)
T ss_pred             hhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh
Confidence            678889999999999999988887655     799999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++|++||+++|.. .++..+||+|++|++|++++.|+.+.
T Consensus       181 ~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~  219 (245)
T COG4555         181 NEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEA  219 (245)
T ss_pred             cCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHH
Confidence            9999999999996 58999999999999999999998765

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.9e-39  Score=342.83  Aligned_cols=182  Identities=26%  Similarity=0.390  Sum_probs=162.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|+|+.+++     +|+|.++|+++...   .+++|||+|+..+|+++||+||+.|..+.+   ..+
T Consensus        36 lG~sGsGKSTLLr~iaGl~~p~-----~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~  107 (356)
T PRK11650         36 VGPSGCGKSTLLRMVAGLERIT-----SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMP  107 (356)
T ss_pred             ECCCCCcHHHHHHHHHCCCCCC-----ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCC
Confidence            5999999999999999999987     89999999987542   356999999999999999999999987643   235


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      +.+.+++++++++.+||.+..     ++++++|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+
T Consensus       108 ~~~~~~~~~~~l~~~gL~~~~-----~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~  182 (356)
T PRK11650        108 KAEIEERVAEAARILELEPLL-----DRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR  182 (356)
T ss_pred             HHHHHHHHHHHHHHcCChhHh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            566677899999999996554     456789999999999999999999999999999999999999999999999986


Q ss_pred             c-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      + |.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus       183 ~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~  221 (356)
T PRK11650        183 RLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVE  221 (356)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHH
Confidence            5 89999999996 57889999999999999999998765

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.2e-39  Score=340.91  Aligned_cols=182  Identities=30%  Similarity=0.446  Sum_probs=163.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +|||||||||||++|+|+.+++     +|+|.++|+++...   .+.+|||+|+..+||++||+||+.|....+   ..+
T Consensus        36 ~GpsGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~  107 (353)
T TIGR03265        36 LGPSGCGKTTLLRIIAGLERQT-----AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMG  107 (353)
T ss_pred             ECCCCCCHHHHHHHHHCCCCCC-----ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCC
Confidence            5999999999999999999987     89999999987542   356999999999999999999999987643   245


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      +.+.+++++++++.+||.+..|     +++++|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+
T Consensus       108 ~~~~~~~~~~~l~~l~L~~~~~-----~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~  182 (353)
T TIGR03265       108 RAEVAERVAELLDLVGLPGSER-----KYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR  182 (353)
T ss_pred             HHHHHHHHHHHHHHcCCCchhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence            6677788999999999976554     46789999999999999999999999999999999999999999999999976


Q ss_pred             c-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      + |.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus       183 ~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~  221 (353)
T TIGR03265       183 RLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQE  221 (353)
T ss_pred             hcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            4 89999999996 47889999999999999999998765

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.9e-39  Score=339.66  Aligned_cols=182  Identities=29%  Similarity=0.480  Sum_probs=163.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +|||||||||||++|+|+.+++     +|+|.++|+++...   ++++|||+|+..+|+++||+||+.|..+.+   ..+
T Consensus        38 lGpsGsGKSTLLr~IaGl~~p~-----~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~  109 (351)
T PRK11432         38 LGPSGCGKTTVLRLVAGLEKPT-----EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVP  109 (351)
T ss_pred             ECCCCCcHHHHHHHHHCCCCCC-----ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCC
Confidence            5999999999999999999987     89999999987542   356999999999999999999999987653   245


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      +++.+++++++++.+||.+..     +++++.|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.+
T Consensus       110 ~~~~~~~v~~~l~~~gl~~~~-----~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~  184 (351)
T PRK11432        110 KEERKQRVKEALELVDLAGFE-----DRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ  184 (351)
T ss_pred             HHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence            567778899999999996554     456789999999999999999999999999999999999999999999999976


Q ss_pred             c-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      + |+|+|++||++ .++..++|++++|++|+++..|++++
T Consensus       185 ~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~  223 (351)
T PRK11432        185 QFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQE  223 (351)
T ss_pred             hcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            4 89999999996 47888999999999999999998765

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.6e-39  Score=337.56  Aligned_cols=182  Identities=27%  Similarity=0.402  Sum_probs=161.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++|+++...        ++++||++|+..+++.+||+||+.+..... 
T Consensus        37 iG~sGaGKSTLlr~I~gl~~p~-----~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~-  110 (343)
T TIGR02314        37 IGASGAGKSTLIRCVNLLERPT-----SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD-  110 (343)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc-
Confidence            6999999999999999999987     89999999987542        346999999999999999999999876543 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..++++.++++.++++.+||.+..|     +++++|||||||||+|||||+++|++|+|||||+|||+.++..++++|
T Consensus       111 --~~~~~~~~~~v~e~l~~vgL~~~~~-----~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL  183 (343)
T TIGR02314       111 --NTPKDEIKRKVTELLALVGLGDKHD-----SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL  183 (343)
T ss_pred             --CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence              2355667778999999999976554     467899999999999999999999999999999999999999999999


Q ss_pred             HHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++++ |.|||++||++ ..+.++||++++|++|++++.|++++
T Consensus       184 ~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~  227 (343)
T TIGR02314       184 KEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSE  227 (343)
T ss_pred             HHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            999865 99999999996 47788999999999999999998755

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=9.3e-39  Score=333.98  Aligned_cols=182  Identities=34%  Similarity=0.461  Sum_probs=161.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+++|+|+++|+     +|+|.++|.++...    ++++|||+|++.+++.+||+||+.+.+..+   ..
T Consensus        39 lGpNGaGKSTLl~~l~Gl~~p~-----~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~  110 (306)
T PRK13537         39 LGPNGAGKTTTLRMLLGLTHPD-----AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GL  110 (306)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CC
Confidence            6999999999999999999987     89999999987542    356999999999999999999999877653   23


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      +..+..++++++++.++|.+..++     ++++||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       111 ~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~  185 (306)
T PRK13537        111 SAAAARALVPPLLEFAKLENKADA-----KVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL  185 (306)
T ss_pred             CHHHHHHHHHHHHHHcCCchHhcC-----chhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence            345556678999999999766555     456899999999999999999999999999999999999999999999998


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++|+|||++||++ .++..+||++++|++|++++.|++++
T Consensus       186 ~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~  224 (306)
T PRK13537        186 ARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHA  224 (306)
T ss_pred             hCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence            8899999999996 47888999999999999999998766

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.2e-39  Score=313.37  Aligned_cols=184  Identities=32%  Similarity=0.494  Sum_probs=160.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||||+|+|+.+++     +|+|.+||.++...        ++++||++|++.+.+.+||.+|+..+..-+.
T Consensus        36 IG~SGaGKSTLLR~lngl~d~t-----~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~  110 (258)
T COG3638          36 IGPSGAGKSTLLRSLNGLVDPT-----SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYT  110 (258)
T ss_pred             ECCCCCcHHHHHHHHhcccCCC-----cceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccc
Confidence            6999999999999999999887     89999999776442        2459999999999999999999988754333


Q ss_pred             C------CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 007344           73 P------EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE  146 (607)
Q Consensus        73 ~------~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~  146 (607)
                      +      ...++++ +..+-+.|+++|+.+.+-+     +...|||||+|||+|||+|+++|++++.|||+++|||.+++
T Consensus       111 s~~~slfglfsk~d-k~~Al~aLervgi~~~A~q-----ra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~  184 (258)
T COG3638         111 STWRSLFGLFSKED-KAQALDALERVGILDKAYQ-----RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAK  184 (258)
T ss_pred             hHHHHHhCCCCHHH-HHHHHHHHHHcCcHHHHHH-----HhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHH
Confidence            2      1234444 4567789999999776655     45679999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          147 KVMEALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       147 ~i~~~L~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++|+.|++++ ++|.|||++.||. +.+.++|||++-|++|+++|.||+++
T Consensus       185 ~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivfDg~~~e  234 (258)
T COG3638         185 KVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIVFDGPASE  234 (258)
T ss_pred             HHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEEEeCChhh
Confidence            9999999998 6799999999996 47788999999999999999999988

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=1.3e-38  Score=339.12  Aligned_cols=182  Identities=26%  Similarity=0.417  Sum_probs=162.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccc--eEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLS--GLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~--G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|||||||||||++|+|+.+++     +  |+|.++|+++...   .+++|||+|+..+|+.+||+||+.|..+.+   .
T Consensus        37 lGpsGsGKSTLLr~iaGl~~p~-----~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~  108 (362)
T TIGR03258        37 IGKSGCGKTTLLRAIAGFVKAA-----GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---K  108 (362)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---C
Confidence            5999999999999999999987     6  9999999987542   356999999999999999999999987643   2


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      .++.+.+++++++++.+||.+..|     +++++|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++
T Consensus       109 ~~~~~~~~~v~~~l~~~gL~~~~~-----~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l  183 (362)
T TIGR03258       109 MPKADIAERVADALKLVGLGDAAA-----HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL  183 (362)
T ss_pred             CCHHHHHHHHHHHHHhcCCCchhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence            455667778999999999976554     467899999999999999999999999999999999999999999999999


Q ss_pred             Hhc--CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          156 AQD--GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       156 a~~--g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .++  |.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus       184 ~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~  225 (362)
T TIGR03258       184 HEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQA  225 (362)
T ss_pred             HHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            876  79999999996 47888999999999999999998765

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=1.9e-38  Score=339.07  Aligned_cols=182  Identities=27%  Similarity=0.418  Sum_probs=162.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +|||||||||||++|+|+.+++     +|+|.++|+++...   ++.+|||+|+..+||.+||+||+.|+.+.+   ..+
T Consensus        46 lGpsGsGKSTLLr~IaGl~~p~-----~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~  117 (375)
T PRK09452         46 LGPSGCGKTTVLRLIAGFETPD-----SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTP  117 (375)
T ss_pred             ECCCCCcHHHHHHHHhCCCCCC-----ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCC
Confidence            5999999999999999999987     89999999987542   356999999999999999999999986543   234


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      +.+.+++++++++.+||.+..|     +++++|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+
T Consensus       118 ~~~~~~~~~~~l~~~~l~~~~~-----~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~  192 (375)
T PRK09452        118 AAEITPRVMEALRMVQLEEFAQ-----RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR  192 (375)
T ss_pred             HHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence            5666778999999999965554     46789999999999999999999999999999999999999999999999986


Q ss_pred             c-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      + |.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus       193 ~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~  231 (375)
T PRK09452        193 KLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPRE  231 (375)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            4 89999999996 47888999999999999999998765

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=2.7e-38  Score=330.17  Aligned_cols=182  Identities=31%  Similarity=0.465  Sum_probs=160.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++|.++...    ++++||++|++.+++.+||+||+.+.+..+.   .
T Consensus        25 ~G~NGaGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~   96 (302)
T TIGR01188        25 LGPNGAGKTTTIRMLTTLLRPT-----SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYG---L   96 (302)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcC---C
Confidence            6999999999999999999887     89999999887432    2459999999999999999999998776532   3


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      +..+.+++++++++.+||.+..++     +++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus        97 ~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~  171 (302)
T TIGR01188        97 PKDEAEERAEELLELFELGEAADR-----PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK  171 (302)
T ss_pred             CHHHHHHHHHHHHHHcCChhHhCC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence            344556678999999999765544     567899999999999999999999999999999999999999999999998


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++|+|||+++|++ .++...||++++|++|++++.|++++
T Consensus       172 ~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~  210 (302)
T TIGR01188       172 EEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEE  210 (302)
T ss_pred             hCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence            8899999999996 47888999999999999999998765

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=3.3e-38  Score=335.37  Aligned_cols=185  Identities=30%  Similarity=0.428  Sum_probs=162.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-EIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~   76 (607)
                      +||||||||||||+|+|+.+++     +|+|.++|+++...   .++++||+|+..+++.+||+||+.|....+.. ...
T Consensus        34 lGpsGsGKSTLLr~IaGl~~p~-----~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~  108 (353)
T PRK10851         34 LGPSGSGKTTLLRIIAGLEHQT-----SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERP  108 (353)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCC
Confidence            5999999999999999999887     89999999987532   35699999999999999999999998654211 123


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      ++++.+++++++++.++|.+..     +++++.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       109 ~~~~~~~~~~~~l~~~~L~~~~-----~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~  183 (353)
T PRK10851        109 NAAAIKAKVTQLLEMVQLAHLA-----DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH  183 (353)
T ss_pred             CHHHHHHHHHHHHHHcCCchhh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence            4566677899999999996544     45678999999999999999999999999999999999999999999999998


Q ss_pred             hc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 QD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++ |.|+|++||++ .++..++|++++|++|++++.|++++
T Consensus       184 ~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~  223 (353)
T PRK10851        184 EELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQ  223 (353)
T ss_pred             HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            65 89999999996 47888999999999999999998765

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=4.5e-38  Score=316.83  Aligned_cols=183  Identities=34%  Similarity=0.480  Sum_probs=157.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+|+|+|+++++     +|+|.++|.++...        ++.++||+|++.+++.+||+||+.+......
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~  106 (235)
T cd03261          32 IGPSGSGKSTLLRLIVGLLRPD-----SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT  106 (235)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc
Confidence            6999999999999999999887     89999999876431        2459999999999999999999988754321


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..+.++.++++.++++.+||.+..     ++.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|
T Consensus       107 --~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l  179 (235)
T cd03261         107 --RLSEEEIREIVLEKLEAVGLRGAE-----DLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLI  179 (235)
T ss_pred             --CCCHHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence              124455567788999999996544     3456789999999999999999999999999999999999999999999


Q ss_pred             HHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++ .|+|||+++|++. .+...||++++|++|++++.|++++
T Consensus       180 ~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~  223 (235)
T cd03261         180 RSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEE  223 (235)
T ss_pred             HHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHH
Confidence            99986 4899999999964 6788899999999999999987654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.9e-38  Score=337.13  Aligned_cols=182  Identities=25%  Similarity=0.388  Sum_probs=162.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +|||||||||||++|+|+.+++     +|+|.++|+++...   ++.+|||+|+..+|+++||.||+.|..+.+   ..+
T Consensus        51 lGpsGsGKSTLLr~IaGl~~p~-----~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~  122 (377)
T PRK11607         51 LGASGCGKSTLLRMLAGFEQPT-----AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLP  122 (377)
T ss_pred             ECCCCCcHHHHHHHHhCCCCCC-----ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCC
Confidence            5999999999999999999987     89999999987542   356999999999999999999999987643   234


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      +.+.+++++++++.+||.+..     ++++++|||||||||+|||+|+.+|++|+|||||+|||..++..+.+.|+++.+
T Consensus       123 ~~~~~~~v~~~l~~l~L~~~~-----~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~  197 (377)
T PRK11607        123 KAEIASRVNEMLGLVHMQEFA-----KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE  197 (377)
T ss_pred             HHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            566777899999999996544     456789999999999999999999999999999999999999999999999875


Q ss_pred             -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                       .|.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus       198 ~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~  236 (377)
T PRK11607        198 RVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEE  236 (377)
T ss_pred             hcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHH
Confidence             589999999996 47889999999999999999998765

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-38  Score=318.36  Aligned_cols=181  Identities=34%  Similarity=0.500  Sum_probs=160.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC------ccceEEEEccCC--CCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------KAYKFAYVRQED--LFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +|+||||||||+++|+|+++|.     +|+|.++|.+...      .++++|||+|++  .++. -||.|.+.|+..-. 
T Consensus        36 ~G~nGsGKSTL~~~l~GLl~p~-----~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~-  108 (235)
T COG1122          36 IGPNGSGKSTLLKLLNGLLKPT-----SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL-  108 (235)
T ss_pred             ECCCCCCHHHHHHHHcCcCcCC-----CCEEEECCeeccchhhHHHhhcceEEEEECccccccc-CcHHHHHhhchhhc-
Confidence            5999999999999999999997     7999999998652      246799999997  4554 59999999987643 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..+.++.+++++++++.+|+.+.++     +.+..|||||||||+||.+|+.+|++|+|||||||||+..+.++++.+
T Consensus       109 --g~~~~e~~~rv~~~l~~vgl~~~~~-----r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l  181 (235)
T COG1122         109 --GLPREEIEERVAEALELVGLEELLD-----RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL  181 (235)
T ss_pred             --CCCHHHHHHHHHHHHHHcCchhhcc-----CCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence              3566788999999999999976654     567899999999999999999999999999999999999999999999


Q ss_pred             HHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++.++ |+|+|++||+. ..+...+|++++|++|+++++|++.+
T Consensus       182 ~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~  225 (235)
T COG1122         182 KKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAE  225 (235)
T ss_pred             HHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHH
Confidence            999977 68999999995 57888899999999999999998654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=7.2e-38  Score=332.80  Aligned_cols=182  Identities=27%  Similarity=0.396  Sum_probs=161.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +|||||||||||++|+|+.+|+     +|+|.++|+++...         ++.++||+|+..+++.+||+||+.+.....
T Consensus        25 ~G~sGsGKSTLLr~L~Gl~~p~-----~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~   99 (363)
T TIGR01186        25 MGLSGSGKSTTVRMLNRLIEPT-----AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL   99 (363)
T ss_pred             ECCCCChHHHHHHHHhCCCCCC-----ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc
Confidence            6999999999999999999987     89999999987642         346999999999999999999999987653


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                         ..++++..+++.++++.+||.+..     +++++.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.
T Consensus       100 ---~~~~~~~~~~~~~~l~~vgL~~~~-----~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~  171 (363)
T TIGR01186       100 ---GWPEQERKEKALELLKLVGLEEYE-----HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE  171 (363)
T ss_pred             ---CCCHHHHHHHHHHHHHhcCCchhh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence               245566778899999999996544     446778999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       152 L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++.+ .|+|||++||+. .++..++|++++|++|+++..|++++
T Consensus       172 l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~e  216 (363)
T TIGR01186       172 LKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDE  216 (363)
T ss_pred             HHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence            999975 489999999996 46788899999999999999998765

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=1.6e-37  Score=309.72  Aligned_cols=180  Identities=34%  Similarity=0.510  Sum_probs=156.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+|+|+|+.+++     +|+|.++|+++....++++||+|++.+++.+||+||+.+....+.   ....+
T Consensus        36 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~  107 (220)
T cd03293          36 VGPSGCGKSTLLRIIAGLERPT-----SGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAE  107 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHH
Confidence            5999999999999999999886     899999999876555679999999999999999999998765431   23344


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g  159 (607)
                      ..++++++++.+||.+..+     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus       108 ~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~  182 (220)
T cd03293         108 ARERAEELLELVGLSGFEN-----AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETG  182 (220)
T ss_pred             HHHHHHHHHHHcCChhhhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            5567899999999965444     35678999999999999999999999999999999999999999999999964 58


Q ss_pred             CeEEEEecCChhHHHhhhcceeeec--CCeeeeeCCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLT--EGKLVYAGPA  194 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~--~G~iv~~G~~  194 (607)
                      +|||+++|++. ++...||++++|+  +|+++..+++
T Consensus       183 ~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         183 KTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             CEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence            99999999974 6778899999999  7999988765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=1.2e-37  Score=329.61  Aligned_cols=182  Identities=32%  Similarity=0.459  Sum_probs=160.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++|.++...    ++++||++|+..+++.+||.||+.+.+..+.   .
T Consensus        73 lGpNGaGKSTLl~~L~Gl~~p~-----~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~  144 (340)
T PRK13536         73 LGPNGAGKSTIARMILGMTSPD-----AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---M  144 (340)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCC-----ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---C
Confidence            6999999999999999999987     89999999987532    3469999999999999999999998765432   2


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      +..+..++++++++.+||.+..++     ++++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       145 ~~~~~~~~~~~ll~~~~L~~~~~~-----~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~  219 (340)
T PRK13536        145 STREIEAVIPSLLEFARLESKADA-----RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL  219 (340)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhCC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence            334455678889999999765554     566899999999999999999999999999999999999999999999998


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++|+|||++||+. .++..+||+|++|++|++++.|++++
T Consensus       220 ~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~  258 (340)
T PRK13536        220 ARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHA  258 (340)
T ss_pred             hCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            8899999999996 57889999999999999999998766

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-37  Score=304.99  Aligned_cols=181  Identities=31%  Similarity=0.451  Sum_probs=159.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCC--CCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED--LFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +|+||||||||.++|+|+.+++     +|+|.++|++..+.      .+.+-+|+||+  .+.|..||++.|.-..... 
T Consensus        39 vGeSGsGKSTL~r~l~Gl~~p~-----~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~-  112 (252)
T COG1124          39 VGESGSGKSTLARLLAGLEKPS-----SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH-  112 (252)
T ss_pred             EcCCCCCHHHHHHHHhcccCCC-----CceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC-
Confidence            6999999999999999999997     89999999876553      34599999998  6899999999998776542 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..++.  ++++.++++.+||.    ..+.++++.+||||||||++|||||+.+|++|+||||||+||+..+.+|+++|
T Consensus       113 --~~~~~--~~~i~~~L~~VgL~----~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL  184 (252)
T COG1124         113 --GLSKS--QQRIAELLDQVGLP----PSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLL  184 (252)
T ss_pred             --CccHH--HHHHHHHHHHcCCC----HHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHH
Confidence              23333  34499999999995    44556789999999999999999999999999999999999999999999999


Q ss_pred             HHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .++.+ .|.|.|+++||. ..+.++|||+++|++|++++.+++.+
T Consensus       185 ~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~~~  228 (252)
T COG1124         185 LELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTEE  228 (252)
T ss_pred             HHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeechhh
Confidence            99985 578999999995 58999999999999999999999877

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-37  Score=333.59  Aligned_cols=182  Identities=31%  Similarity=0.433  Sum_probs=160.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|+|+++++     +|+|.++|+++...   .+++|||+|+..+++.+||+||+.|....+   ..+
T Consensus        35 ~G~nGsGKSTLL~~iaGl~~p~-----~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~  106 (369)
T PRK11000         35 VGPSGCGKSTLLRMIAGLEDIT-----SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAK  106 (369)
T ss_pred             ECCCCCcHHHHHHHHhCCCCCC-----ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCC
Confidence            5999999999999999999887     89999999987542   356999999999999999999999986543   234


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      .++.+++++++++.+||.+..+     +++++|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+
T Consensus       107 ~~~~~~~~~~~l~~lgL~~~~~-----~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~  181 (369)
T PRK11000        107 KEEINQRVNQVAEVLQLAHLLD-----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK  181 (369)
T ss_pred             HHHHHHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            4556678999999999965444     46678999999999999999999999999999999999999999999999976


Q ss_pred             c-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      + |.|+|++||++ .++..+||++++|++|+++..|++++
T Consensus       182 ~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~  220 (369)
T PRK11000        182 RLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLE  220 (369)
T ss_pred             HhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            4 89999999996 47888999999999999999998765

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=2e-37  Score=307.42  Aligned_cols=178  Identities=33%  Similarity=0.485  Sum_probs=153.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||+++|+|+.++.     +|+|.++|+++...   .++++|++|++.+++.+||+||+.+.....   ...
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~  103 (213)
T cd03259          32 LGPSGCGKTTLLRLIAGLERPD-----SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVP  103 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCC
Confidence            5999999999999999999887     89999999886432   346999999999999999999998875432   123


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      ..+.+++++++++.+||.+..+     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       104 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~  178 (213)
T cd03259         104 KAEIRARVRELLELVGLEGLLN-----RYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR  178 (213)
T ss_pred             HHHHHHHHHHHHHHcCChhhhh-----cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence            4445567889999999965544     35678999999999999999999999999999999999999999999999986


Q ss_pred             -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                       .|+|||+++|++. .+...||++++|++|++++.|
T Consensus       179 ~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         179 ELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             HcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence             4899999999964 677889999999999998765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=1.6e-37  Score=308.77  Aligned_cols=174  Identities=27%  Similarity=0.423  Sum_probs=150.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||||+|+|+++++     +|+|.++|+++...        +++++|++|++.+++.+||+||+.+....+.
T Consensus        35 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~  109 (216)
T TIGR00960        35 VGHSGAGKSTFLKLILGIEKPT-----RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG  109 (216)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC
Confidence            5999999999999999999886     89999999876431        2459999999999999999999998765431


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                         ...++.+++++++++.+||.+..+     +.+.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus       110 ---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  181 (216)
T TIGR00960       110 ---VPPRDANERVSAALEKVGLEGKAH-----ALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLF  181 (216)
T ss_pred             ---CCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence               233445567899999999965544     456789999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCee
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i  188 (607)
                      ++++++|+|||+++|++. .+...||++++|++|++
T Consensus       182 ~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       182 EEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence            999878999999999964 67788999999999974

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=2.3e-37  Score=311.69  Aligned_cols=185  Identities=30%  Similarity=0.457  Sum_probs=157.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +|||||||||||++|+|++++.     +|+|.++|.++...      +..++|++|++.+++.+||+||+.+........
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~  106 (236)
T cd03219          32 IGPNGAGKTTLFNLISGFLRPT-----SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGS  106 (236)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCC-----CceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccc
Confidence            5999999999999999999886     89999999987542      134999999999999999999998876532111


Q ss_pred             C-------CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344           75 I-------LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        75 ~-------~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~  147 (607)
                      .       ....+..++++++++.+||.+..     ++.++.|||||||||+||++|+.+|++++|||||+|||+.++..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~  181 (236)
T cd03219         107 GLLLARARREEREARERAEELLERVGLADLA-----DRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEE  181 (236)
T ss_pred             ccccccccccHHHHHHHHHHHHHHcCccchh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            0       02344556789999999996544     34577899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       148 i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.+.|++++++|+|||+++|++. .+...||++++|++|++++.|++++
T Consensus       182 l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  229 (236)
T cd03219         182 LAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDE  229 (236)
T ss_pred             HHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHH
Confidence            99999999878999999999975 6778899999999999999887654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=2.5e-37  Score=308.35  Aligned_cols=182  Identities=31%  Similarity=0.474  Sum_probs=157.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+|+|+|+++++     +|+|.++|.+....    .++++|++|++.+++.+||+||+.+....+   ..
T Consensus        32 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~  103 (220)
T cd03265          32 LGPNGAGKTTTIKMLTTLLKPT-----SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GV  103 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CC
Confidence            5999999999999999999887     89999999876431    246999999999999999999999876543   12


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      ..++.+++++++++.+||.+..+     .+++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus       104 ~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  178 (220)
T cd03265         104 PGAERRERIDELLDFVGLLEAAD-----RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK  178 (220)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence            33445567899999999965444     4567899999999999999999999999999999999999999999999998


Q ss_pred             hc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 QD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++ |+|||+++|++. ++...+|++++|++|+++..|++++
T Consensus       179 ~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  218 (220)
T cd03265         179 EEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE  218 (220)
T ss_pred             HhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence            76 899999999964 6788899999999999998887643

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=2.7e-37  Score=310.39  Aligned_cols=182  Identities=28%  Similarity=0.494  Sum_probs=157.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||||+|+|+.+++     +|+|.++|.+....      ++.++|++|++.+++.+||+||+.+....+.  
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--  104 (232)
T cd03218          32 LGPNGAGKTTTFYMIVGLVKPD-----SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG--  104 (232)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC--
Confidence            6999999999999999999887     89999999876431      1359999999999999999999988654321  


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                       ....+..++++++++.+|+.+..+     +.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus       105 -~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~  178 (232)
T cd03218         105 -LSKKEREEKLEELLEEFHITHLRK-----SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI  178 (232)
T ss_pred             -CCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence             233445567889999999965443     45678999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++|+|||+++|++. .+...+|++++|++|++++.|+.++
T Consensus       179 ~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  219 (232)
T cd03218         179 LKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEE  219 (232)
T ss_pred             HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHH
Confidence            9888999999999975 7888999999999999999887654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=3.3e-37  Score=324.88  Aligned_cols=182  Identities=29%  Similarity=0.447  Sum_probs=160.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|+|+.+++     +|+|.++|+++...   .++++|++|+..+++.+||+||+.|..+.+   ..+
T Consensus         2 ~G~nGsGKSTLl~~iaGl~~p~-----~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~   73 (325)
T TIGR01187         2 LGPSGCGKTTLLRLLAGFEQPD-----SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVP   73 (325)
T ss_pred             cCCCCCCHHHHHHHHHCCCCCC-----ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCC
Confidence            6999999999999999999887     89999999987542   346999999999999999999999986543   123


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      .++.+++++++++.+||.+..+     +.++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus        74 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~  148 (325)
T TIGR01187        74 RAEIKPRVLEALRLVQLEEFAD-----RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQE  148 (325)
T ss_pred             HHHHHHHHHHHHHHcCCcchhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence            4555677899999999965544     46778999999999999999999999999999999999999999999999976


Q ss_pred             c-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      + |+|+|++||++ .++..++|++++|++|+++..|++++
T Consensus       149 ~~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~  187 (325)
T TIGR01187       149 QLGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEE  187 (325)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            4 89999999996 47888999999999999999998765

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=3.1e-37  Score=322.40  Aligned_cols=182  Identities=33%  Similarity=0.464  Sum_probs=158.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +|||||||||||++|+|+++|+     +|+|.++|.++...    ++++||++|++.+++.+||+||+.+....+   ..
T Consensus        36 ~G~NGaGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~  107 (303)
T TIGR01288        36 LGPNGAGKSTIARMLLGMISPD-----RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GM  107 (303)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CC
Confidence            5999999999999999999887     89999999876432    346999999999999999999998765432   12


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      +..+.+++++++++.++|.+..++     .+++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       108 ~~~~~~~~~~~ll~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~  182 (303)
T TIGR01288       108 STREIEAVIPSLLEFARLESKADV-----RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL  182 (303)
T ss_pred             CHHHHHHHHHHHHHHCCChhHhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence            344455678889999999765544     567899999999999999999999999999999999999999999999998


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++|+|||+++|++. ++...||++++|++|++++.|++++
T Consensus       183 ~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  221 (303)
T TIGR01288       183 ARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHA  221 (303)
T ss_pred             hCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence            88999999999964 7888899999999999999998765

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=5.3e-37  Score=305.32  Aligned_cols=178  Identities=34%  Similarity=0.538  Sum_probs=155.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +|+|||||||||++|+|+.+++     +|+|.++|+++...    +++++|++|++.+++.+||+||+.+....+   ..
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~  108 (218)
T cd03266          37 LGPNGAGKTTTLRMLAGLLEPD-----AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GL  108 (218)
T ss_pred             ECCCCCCHHHHHHHHhCCcCCC-----CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CC
Confidence            5999999999999999999887     89999999887532    246999999999999999999998865543   12


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      ..++..++++++++.+||.+..+     +.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       109 ~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~  183 (218)
T cd03266         109 KGDELTARLEELADRLGMEELLD-----RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR  183 (218)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHh-----hhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence            34555678899999999965544     3567899999999999999999999999999999999999999999999998


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      ++|+|||+++|++. .+...+|++++|++|++++.|
T Consensus       184 ~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         184 ALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             HCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence            78999999999964 677889999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.3e-37  Score=326.21  Aligned_cols=182  Identities=28%  Similarity=0.405  Sum_probs=159.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++|.++...        ++++|||+|++.+++.+||+||+.+....+ 
T Consensus        37 iG~nGsGKSTLlk~L~Gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~-  110 (343)
T PRK11153         37 IGASGAGKSTLIRCINLLERPT-----SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA-  110 (343)
T ss_pred             ECCCCCcHHHHHHHHhCCCCCC-----ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc-
Confidence            6999999999999999999887     89999999987532        245999999999999999999999876543 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..+..+.+++++++++.+||.+..+     ++++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus       111 --~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L  183 (343)
T PRK11153        111 --GTPKAEIKARVTELLELVGLSDKAD-----RYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL  183 (343)
T ss_pred             --CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence              2344555677899999999965544     456789999999999999999999999999999999999999999999


Q ss_pred             HHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++++ |+|||++||++. .+..+||++++|++|++++.|++++
T Consensus       184 ~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~  227 (343)
T PRK11153        184 KDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSE  227 (343)
T ss_pred             HHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence            999864 899999999964 6788899999999999999998654

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=7.7e-37  Score=303.09  Aligned_cols=178  Identities=29%  Similarity=0.454  Sum_probs=154.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||+++|+|+++++     +|+|.++|.++...   .++++|++|++.+++.+||+||+.+....+   ...
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~  103 (213)
T cd03301          32 LGPSGCGKTTTLRMIAGLEEPT-----SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVP  103 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCC
Confidence            5999999999999999999887     89999999886432   246999999999999999999998875433   123


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      .++.+++++++++.+||.+..+     ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       104 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  178 (213)
T cd03301         104 KDEIDERVREVAELLQIEHLLD-----RKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ  178 (213)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence            4455667889999999965544     45678999999999999999999999999999999999999999999999986


Q ss_pred             -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                       .|+|||+++|++. ++...+|++++|++|++++.|
T Consensus       179 ~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         179 RLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             HcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence             4899999999964 678889999999999999876

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.3e-37  Score=318.30  Aligned_cols=204  Identities=27%  Similarity=0.358  Sum_probs=168.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---------ccceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQED--LFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~   69 (607)
                      +||||||||||+|+|+|+++++     +|+|.++|.++..         .++++|||+|++  .+++ .||.||+.|...
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~  111 (288)
T PRK13643         38 IGHTGSGKSTLLQHLNGLLQPT-----EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQ  111 (288)
T ss_pred             ECCCCChHHHHHHHHhcCCCCC-----CcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHH
Confidence            5999999999999999999887     8999999998642         124599999986  5665 599999998765


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      ..   ..+.++.++++.++++.+||. +..     ++.++.||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus       112 ~~---~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l  183 (288)
T PRK13643        112 NF---GIPKEKAEKIAAEKLEMVGLADEFW-----EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEM  183 (288)
T ss_pred             Hc---CCCHHHHHHHHHHHHHHcCCChhhc-----cCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHH
Confidence            32   234566677899999999995 233     346789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCch--hhHhhhcCCCCCCCCCHHHHH
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEP--LAYFSRFGYTCPDHVNPAEFL  219 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~--~~~f~~~g~~~p~~~~~ad~~  219 (607)
                      .+.|++++++|+|||++||++ ..+...||++++|++|++++.|++++..  .+.+...|+.+|.....++.+
T Consensus       184 ~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  255 (288)
T PRK13643        184 MQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL  255 (288)
T ss_pred             HHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence            999999988899999999996 4677889999999999999999876621  233456677777655555444

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=5.9e-37  Score=308.15  Aligned_cols=182  Identities=29%  Similarity=0.421  Sum_probs=157.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+++|+|+++++     +|+|.++|.++...        .+.++|++|++.+++.+|++||+.+....+.
T Consensus        37 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~  111 (233)
T cd03258          37 IGRSGAGKSTLIRCINGLERPT-----SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG  111 (233)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC
Confidence            5999999999999999999887     89999999986432        2459999999999999999999988765431


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                         ....+..+.+.++++.+||.+..+     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus       112 ---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l  183 (233)
T cd03258         112 ---VPKAEIEERVLELLELVGLEDKAD-----AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL  183 (233)
T ss_pred             ---CCHHHHHHHHHHHHHHCCChhhhh-----cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHH
Confidence               234445567889999999965544     356789999999999999999999999999999999999999999999


Q ss_pred             HHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++++ |+|||+++|++. .+...+|++++|++|++++.|+.++
T Consensus       184 ~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  227 (233)
T cd03258         184 RDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEE  227 (233)
T ss_pred             HHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence            999865 899999999964 6788899999999999999887544

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=6.6e-37  Score=309.18  Aligned_cols=185  Identities=29%  Similarity=0.413  Sum_probs=156.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-EIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~   76 (607)
                      +||||||||||+|+|+|+.+++     +|+|.++|.++...   .++++|++|++.+++.+||+||+.+....+.. ...
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  108 (239)
T cd03296          34 LGPSGSGKTTLLRLIAGLERPD-----SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERP  108 (239)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccC
Confidence            6999999999999999999886     89999999886432   24699999999999999999999887543211 001


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      ...+..++++++++.+||.+..+     +.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       109 ~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~  183 (239)
T cd03296         109 PEAEIRAKVHELLKLVQLDWLAD-----RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH  183 (239)
T ss_pred             CHHHHHHHHHHHHHHcCChhhhh-----cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence            23344567889999999965443     4567899999999999999999999999999999999999999999999998


Q ss_pred             hc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 QD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++ |+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       184 ~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  223 (239)
T cd03296         184 DELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDE  223 (239)
T ss_pred             HHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence            65 899999999974 6778899999999999999987654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=6.1e-37  Score=303.28  Aligned_cols=178  Identities=31%  Similarity=0.528  Sum_probs=154.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +|||||||||||++|+|..+++     +|+|.++|+++... .++++|++|+..+++.+||+||+.+....+.   ....
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~  103 (210)
T cd03269          32 LGPNGAGKTTTIRMILGIILPD-----SGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKE  103 (210)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChH
Confidence            6999999999999999999886     89999999876432 3469999999999999999999988765431   2334


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                      +.++.++++++.+||.+..+     +.+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       104 ~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~  178 (210)
T cd03269         104 EARRRIDEWLERLELSEYAN-----KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG  178 (210)
T ss_pred             HHHHHHHHHHHHcCChHHHh-----CcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC
Confidence            45567899999999965544     3567899999999999999999999999999999999999999999999998778


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      +|||+++|++. .+.+.+|++++|++|++++.|
T Consensus       179 ~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         179 KTVILSTHQME-LVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             CEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence            99999999964 677889999999999998754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=9.7e-37  Score=305.40  Aligned_cols=182  Identities=46%  Similarity=0.741  Sum_probs=153.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcC---CCCCCccceEEEECCeeCCCc--cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM---ASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~---~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|.++   ++     +|+|.++|.++...  +++++|++|++.+++.+||+||+.+......+..
T Consensus        39 ~G~nGsGKSTLlk~l~G~~~~~~~~-----~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~  113 (226)
T cd03234          39 LGSSGSGKTTLLDAISGRVEGGGTT-----SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRK  113 (226)
T ss_pred             ECCCCCCHHHHHHHHhCccCCCCCC-----ceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccc
Confidence            59999999999999999988   55     89999999887532  3569999999999999999999998765432222


Q ss_pred             CCHHHHHHHHHH-HHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNS-LLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        76 ~~~~~~~~~v~~-~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ...+...+++++ .++.+++.+.     .++.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus       114 ~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~  188 (226)
T cd03234         114 SSDAIRKKRVEDVLLRDLALTRI-----GGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQ  188 (226)
T ss_pred             cchHHHHHHHHHHHHHhhcchhh-----hcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            222223334555 8899998543     3456788999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      ++++|.|+|+++|++..++.+.||++++|++|++++.|
T Consensus       189 ~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         189 LARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             HHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            98779999999999756788999999999999998765

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=4.8e-37  Score=310.18  Aligned_cols=185  Identities=30%  Similarity=0.460  Sum_probs=154.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+|+|+|+++++     +|+|.++|+++...        .+.++|++|++.+++.+||+||+.+......
T Consensus        33 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  107 (241)
T cd03256          33 IGPSGAGKSTLLRCLNGLVEPT-----SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR  107 (241)
T ss_pred             ECCCCCCHHHHHHHHhCCcCCC-----CceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccc
Confidence            5999999999999999999876     89999999886532        2459999999999999999999987542110


Q ss_pred             -----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344           73 -----PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        73 -----~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~  147 (607)
                           .......+..+++.++++.+||.+..     +..++.|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~  182 (241)
T cd03256         108 STWRSLFGLFPKEEKQRALAALERVGLLDKA-----YQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ  182 (241)
T ss_pred             hhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----CCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHH
Confidence                 00111123446688899999996544     34567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          148 VMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       148 i~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.+.|+++++ .|+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       183 l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~  231 (241)
T cd03256         183 VMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAE  231 (241)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHH
Confidence            9999999986 4899999999975 6777899999999999999987654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=1e-36  Score=306.19  Aligned_cols=184  Identities=33%  Similarity=0.452  Sum_probs=156.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+|+|+|+.+++     +|+|.++|+++.....+.+|++|++.+++.+||+||+.+......+ .....+
T Consensus        17 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~   90 (230)
T TIGR01184        17 IGHSGCGKSTLLNLISGLAQPT-----SGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLP-DLSKSE   90 (230)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhccc-CCCHHH
Confidence            5999999999999999999887     8999999998765433469999999999999999999886431111 233445


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc-C
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-G  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~-g  159 (607)
                      .+++++++++.+||.+..+     +.+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |
T Consensus        91 ~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~  165 (230)
T TIGR01184        91 RRAIVEEHIALVGLTEAAD-----KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR  165 (230)
T ss_pred             HHHHHHHHHHHcCCHHHHc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC
Confidence            5667889999999965444     456789999999999999999999999999999999999999999999999864 8


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +|||+++|++. .+...+|++++|++|+++..|+..+
T Consensus       166 ~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~  201 (230)
T TIGR01184       166 VTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILE  201 (230)
T ss_pred             CEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCcee
Confidence            99999999964 6788899999999999998886544

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=8.8e-37  Score=305.72  Aligned_cols=183  Identities=30%  Similarity=0.420  Sum_probs=154.5

Q ss_pred             CCCCCCcHHHHHHHHHcCc-----CCCCCCccceEEEECCeeCCCc-------cceEEEEccCCCCCCCCCHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQL-----MASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAA   68 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~-----~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~   68 (607)
                      +||||||||||+|+|+|+.     ++.     +|+|.++|+++...       +++++|++|++.++ .+||+||+.+..
T Consensus        32 ~G~nGsGKSTLl~~i~G~~~~~~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~  105 (227)
T cd03260          32 IGPSGCGKSTLLRLLNRLNDLIPGAPD-----EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGL  105 (227)
T ss_pred             ECCCCCCHHHHHHHHHhhcccccCCCC-----CeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHH
Confidence            5999999999999999998     665     89999999886431       24599999999888 789999998876


Q ss_pred             HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      ..+.  .....+.+++++++++.+||.+..+....   +++||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus       106 ~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l  180 (227)
T cd03260         106 RLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI  180 (227)
T ss_pred             HhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence            5431  11223345678899999999755443210   578999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|++++++ +|||+++|++. .+...||++++|++|++++.|++++
T Consensus       181 ~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  226 (227)
T cd03260         181 EELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ  226 (227)
T ss_pred             HHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence            9999999877 99999999964 6778899999999999999998764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=1e-36  Score=303.31  Aligned_cols=173  Identities=36%  Similarity=0.523  Sum_probs=149.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||||+|+|+++++     +|+|.++|.++...         .+.++|++|++.+++.+||+||+.+....+
T Consensus        36 ~G~nGsGKSTLl~~i~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~  110 (218)
T cd03255          36 VGPSGSGKSTLLNILGGLDRPT-----SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA  110 (218)
T ss_pred             EcCCCCCHHHHHHHHhCCcCCC-----ceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc
Confidence            6999999999999999999887     89999999876431         235999999999999999999999876543


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                      .   ....+.+++++++++.+||.+..+     +.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus       111 ~---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~  182 (218)
T cd03255         111 G---VPKKERRERAEELLERVGLGDRLN-----HYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMEL  182 (218)
T ss_pred             C---CCHHHHHHHHHHHHHHcCCchhhh-----cChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            1   233444567899999999965443     45678999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCee
Q 007344          152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       152 L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i  188 (607)
                      |+++++ +|+|||+++|++. .+. .||++++|++|++
T Consensus       183 l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         183 LRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI  218 (218)
T ss_pred             HHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence            999987 5899999999975 455 8999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=9.2e-37  Score=308.66  Aligned_cols=184  Identities=29%  Similarity=0.501  Sum_probs=157.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|||||||||||++|+|+.+++     +|+|.++|.++...     ..+++|++|++.+++.+||+||+.+....+   .
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~  104 (242)
T cd03295          33 IGPSGSGKTTTMKMINRLIEPT-----SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---K  104 (242)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---C
Confidence            5999999999999999999886     89999999876432     245999999999999999999999875543   1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      ...++..+++.++++.+||.+.   ...++.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus       105 ~~~~~~~~~~~~~l~~l~l~~~---~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~  181 (242)
T cd03295         105 WPKEKIRERADELLALVGLDPA---EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRL  181 (242)
T ss_pred             CCHHHHHHHHHHHHHHcCCCcH---HHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence            2344555678999999999640   1234567889999999999999999999999999999999999999999999999


Q ss_pred             Hhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          156 AQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       156 a~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++ |+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       182 ~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  222 (242)
T cd03295         182 QQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDE  222 (242)
T ss_pred             HHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence            864 899999999974 6778899999999999999887544

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=3.3e-34  Score=351.33  Aligned_cols=186  Identities=29%  Similarity=0.461  Sum_probs=162.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+|+|+|+.+|+     +|+|.++|+++...    ++.+||++|++.+++.+||+|++.+.++++.   .
T Consensus       962 LG~NGAGKSTLLkiLaGLl~Pt-----sG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~ 1033 (2272)
T TIGR01257       962 LGHNGAGKTTTLSILTGLLPPT-----SGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---R 1033 (2272)
T ss_pred             ECCCCChHHHHHHHHhcCCCCC-----ceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---C
Confidence            6999999999999999999987     89999999987532    3459999999999999999999999877642   2


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      +.++.+++++++++.+||.+.+|     +.+++|||||||||+||+||+.+|++++|||||+|||+.+++.+.++|++++
T Consensus      1034 ~~~~~~~~v~~lL~~vgL~~~~~-----~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~ 1108 (2272)
T TIGR01257      1034 SWEEAQLEMEAMLEDTGLHHKRN-----EEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR 1108 (2272)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh
Confidence            34455677999999999976554     4567899999999999999999999999999999999999999999999995


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHh
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYF  202 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f  202 (607)
                       +|+|||++||++ +++..++||+++|++|+++..|++.. .+..|
T Consensus      1109 -~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~-Lk~~~ 1151 (2272)
T TIGR01257      1109 -SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLF-LKNCF 1151 (2272)
T ss_pred             -CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHH-HHHhc
Confidence             599999999996 47788999999999999999998776 54443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-36  Score=314.49  Aligned_cols=182  Identities=28%  Similarity=0.418  Sum_probs=155.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCC-CCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDL-FFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+++|+|+++++     +|+|.++|.++...       ++++|||+|++. .+...||+||+.+..... 
T Consensus        39 ~G~nGaGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-  112 (287)
T PRK13637         39 IGHTGSGKSTLIQHLNGLLKPT-----SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL-  112 (287)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCC-----ccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC-
Confidence            6999999999999999999887     89999999987531       246999999863 233479999999875432 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLV--SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                        ..+.++..++++++++.+||.  +..     ++.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus       113 --~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~  185 (287)
T PRK13637        113 --GLSEEEIENRVKRAMNIVGLDYEDYK-----DKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILN  185 (287)
T ss_pred             --CCCHHHHHHHHHHHHHHcCCCchhhc-----cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH
Confidence              245566677899999999995  333     45678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .|++++++ |+|||++||++ .++...||++++|++|++++.|++++
T Consensus       186 ~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~  231 (287)
T PRK13637        186 KIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPRE  231 (287)
T ss_pred             HHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999865 89999999996 46778899999999999999998765

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=1.4e-36  Score=312.20  Aligned_cols=182  Identities=27%  Similarity=0.381  Sum_probs=156.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||+|+|+|+++++     +|+|.++|.++...         .++++|++|++.+++.+||+||+.+.....
T Consensus        56 ~G~nGsGKSTLl~~L~Gl~~p~-----~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  130 (269)
T cd03294          56 MGLSGSGKSTLLRCINRLIEPT-----SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ  130 (269)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc
Confidence            5999999999999999999887     89999999876431         235999999999999999999999876432


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                         .....+..++++++++.+||.+..+     ..+++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus       131 ---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~  202 (269)
T cd03294         131 ---GVPRAEREERAAEALELVGLEGWEH-----KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE  202 (269)
T ss_pred             ---CCCHHHHHHHHHHHHHHcCCHhHhh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence               1233445567889999999965544     45678999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       152 L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |+++++ .|+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       203 l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~  247 (269)
T cd03294         203 LLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEE  247 (269)
T ss_pred             HHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence            999975 4899999999964 6788899999999999999887654

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=1.1e-36  Score=303.45  Aligned_cols=181  Identities=36%  Similarity=0.556  Sum_probs=156.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|.++...    .++++|++|++.+++.+||+||+.+....+.   .
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~  105 (220)
T cd03263          34 LGHNGAGKTTTLKMLTGELRPT-----SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---L  105 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---C
Confidence            5999999999999999999887     89999999986432    3459999999999999999999998765431   2


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      +.++..++++++++.+||.+..++     .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       106 ~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~  180 (220)
T cd03263         106 PKSEIKEEVELLLRVLGLTDKANK-----RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR  180 (220)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHhC-----hhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence            334455678899999999655443     467899999999999999999999999999999999999999999999997


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      + ++|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       181 ~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~  218 (220)
T cd03263         181 K-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQE  218 (220)
T ss_pred             c-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHH
Confidence            6 599999999975 6777899999999999999987654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-36  Score=304.10  Aligned_cols=179  Identities=27%  Similarity=0.429  Sum_probs=153.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||+|+|+|+++++     +|+|.++|+++...         .+.++|++|+..+++.+||+||+.+....+
T Consensus        41 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  115 (233)
T PRK11629         41 VGSSGSGKSTLLHLLGGLDTPT-----SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG  115 (233)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence            5999999999999999999886     89999999887532         135999999999999999999999875432


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                         ....++.+++++++++.+||.+..+     +.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus       116 ---~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~  187 (233)
T PRK11629        116 ---KKKPAEINSRALEMLAAVGLEHRAN-----HRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL  187 (233)
T ss_pred             ---CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence               1233445567899999999965443     35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCC
Q 007344          152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA  194 (607)
Q Consensus       152 L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~  194 (607)
                      |+++++ +|+|||+++|++. .+.. +|++++|++|++++.|+.
T Consensus       188 l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~  229 (233)
T PRK11629        188 LGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL  229 (233)
T ss_pred             HHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence            999975 5899999999975 4555 589999999999988864

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=1.4e-36  Score=300.97  Aligned_cols=177  Identities=33%  Similarity=0.509  Sum_probs=152.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+++|+|+++++     +|+|.++|.++...    .+.++|++|++.+++.+||+||+.+....+.   .
T Consensus        31 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~  102 (211)
T cd03264          31 LGPNGAGKTTLMRILATLTPPS-----SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---I  102 (211)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---C
Confidence            5999999999999999999887     89999999876532    3459999999999999999999998765431   2


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      +.++.++.++++++.+||.+..+     ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus       103 ~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  177 (211)
T cd03264         103 PSKEVKARVDEVLELVNLGDRAK-----KKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG  177 (211)
T ss_pred             CHHHHHHHHHHHHHHCCCHHHHh-----CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence            33444567889999999965544     3567899999999999999999999999999999999999999999999998


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      + +.|||+++|++. .+...+|++++|++|++++.|
T Consensus       178 ~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         178 E-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             C-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence            6 589999999964 677889999999999998765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=1.2e-36  Score=317.51  Aligned_cols=181  Identities=27%  Similarity=0.453  Sum_probs=159.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||||+|+|+.+++     +|+|.++|.+....    ++++||++|++.+++.+||.||+.+.+.++.   .
T Consensus        34 ~G~NGaGKTTLl~~l~Gl~~~~-----~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~  105 (301)
T TIGR03522        34 LGPNGAGKSTTMKIITGYLPPD-----SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---M  105 (301)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---C
Confidence            6999999999999999999887     89999999887542    2469999999999999999999998776542   2


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      +.++..++++++++.+||.+..|+     +++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       106 ~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~  180 (301)
T TIGR03522       106 KGQLLKQRVEEMIELVGLRPEQHK-----KIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG  180 (301)
T ss_pred             CHHHHHHHHHHHHHHCCCchHhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc
Confidence            344556678999999999766544     567899999999999999999999999999999999999999999999997


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      + ++|||+++|++ .++.++||++++|++|++++.|+.++
T Consensus       181 ~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~  218 (301)
T TIGR03522       181 K-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDE  218 (301)
T ss_pred             C-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            5 79999999996 47889999999999999999998766

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.2e-37  Score=308.60  Aligned_cols=185  Identities=31%  Similarity=0.412  Sum_probs=154.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +|||||||||||++|+|+.+++     +|+|.++|.++...        +++++|++|++.+++.+||+||+.+......
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~  108 (243)
T TIGR02315        34 IGPSGAGKSTLLRCINRLVEPS-----SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYK  108 (243)
T ss_pred             ECCCCCCHHHHHHHHhCCcCCC-----ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccc
Confidence            5999999999999999999886     89999999876431        2459999999999999999999976432100


Q ss_pred             -----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344           73 -----PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        73 -----~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~  147 (607)
                           .......+.++++.++++.+||.+..+     +.++.|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~  183 (243)
T TIGR02315       109 PTWRSLLGRFSEEDKERALSALERVGLADKAY-----QRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ  183 (243)
T ss_pred             cchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence                 000112334567889999999965443     4567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          148 VMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       148 i~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.+.|+++++ .|+|||+++|++. .+...||++++|++|++++.|++++
T Consensus       184 l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~  232 (243)
T TIGR02315       184 VMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSE  232 (243)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHH
Confidence            9999999975 4899999999964 6778899999999999999887654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-36  Score=325.73  Aligned_cols=182  Identities=26%  Similarity=0.389  Sum_probs=159.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|.++...         +++++||+|+..+++.+||+||+.+....+
T Consensus        60 vG~NGsGKSTLLr~I~Gl~~p~-----sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~  134 (400)
T PRK10070         60 MGLSGSGKSTMVRLLNRLIEPT-----RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA  134 (400)
T ss_pred             ECCCCchHHHHHHHHHcCCCCC-----CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc
Confidence            6999999999999999999987     89999999987532         135999999999999999999999986543


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                         ..+.++.++++.++++.+||.+..     +++++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.
T Consensus       135 ---~~~~~~~~~~~~e~L~~~gL~~~~-----~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~  206 (400)
T PRK10070        135 ---GINAEERREKALDALRQVGLENYA-----HSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE  206 (400)
T ss_pred             ---CCCHHHHHHHHHHHHHHcCCChhh-----hcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence               233455567789999999996544     446788999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       152 L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |+++++ .|+|||++||++. ++..++|++++|++|+++..|++++
T Consensus       207 L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~  251 (400)
T PRK10070        207 LVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDE  251 (400)
T ss_pred             HHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHH
Confidence            999975 5899999999964 6788899999999999999987654

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-36  Score=315.22  Aligned_cols=181  Identities=28%  Similarity=0.396  Sum_probs=155.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---------ccceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQED--LFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~   69 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|+++..         .++++|||+|++  .+++ .||+||+.|...
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~  112 (290)
T PRK13634         39 IGHTGSGKSTLLQHLNGLLQPT-----SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPM  112 (290)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCC-----CcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHH
Confidence            5999999999999999999887     8999999998742         124599999986  4554 699999998754


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      ..   ..+.++.+++++++++.+||. +..     ++.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+
T Consensus       113 ~~---~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l  184 (290)
T PRK13634        113 NF---GVSEEDAKQKAREMIELVGLPEELL-----ARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEM  184 (290)
T ss_pred             Hc---CCCHHHHHHHHHHHHHHCCCChhhh-----hCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence            32   234555667899999999995 333     346778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|++++++ |.|||+++|++. .+...|||+++|++|++++.|++++
T Consensus       185 ~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~  232 (290)
T PRK13634        185 MEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPRE  232 (290)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence            9999999864 999999999964 7888899999999999999998765

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=1.2e-36  Score=327.14  Aligned_cols=185  Identities=31%  Similarity=0.480  Sum_probs=158.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC-
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE-   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-   74 (607)
                      +||||||||||||+|+|++++.     +|+|.++|+++...     ++++|||+|+..+++.+||+||+.+....+... 
T Consensus        35 iGpNGaGKSTLLk~LaGll~p~-----sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~  109 (402)
T PRK09536         35 VGPNGAGKTTLLRAINGTLTPT-----AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRF  109 (402)
T ss_pred             ECCCCchHHHHHHHHhcCCCCC-----CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccc
Confidence            6999999999999999999887     89999999987542     346999999999989999999998864321110 


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      .....+.+++++++++.+||.+..+     +.++.|||||||||.|||+|+++|++|+|||||+|||+.++.+++++|++
T Consensus       110 ~~~~~~~~~~v~~~le~vgl~~~~~-----~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~  184 (402)
T PRK09536        110 DTWTETDRAAVERAMERTGVAQFAD-----RPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRR  184 (402)
T ss_pred             cCCCHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            0012334567899999999976554     45678999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++|+|||+++|++ +.+.++|||+++|++|++++.|++++
T Consensus       185 l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~e  225 (402)
T PRK09536        185 LVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPAD  225 (402)
T ss_pred             HHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence            988899999999996 57888999999999999999998775

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=1.3e-36  Score=300.41  Aligned_cols=174  Identities=33%  Similarity=0.517  Sum_probs=151.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|+|+.++.     +|+|.++|.++...   .++++|++|++.+++.+||+||+.+....+.   . 
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~-  102 (208)
T cd03268          32 LGPNGAGKTTTMKIILGLIKPD-----SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I-  102 (208)
T ss_pred             ECCCCCCHHHHHHHHhCCcCCC-----ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C-
Confidence            5999999999999999999886     89999999876431   3459999999999999999999988765321   1 


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                         .+++++++++.+||.+..+     +.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       103 ---~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  174 (208)
T cd03268         103 ---RKKRIDEVLDVVGLKDSAK-----KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD  174 (208)
T ss_pred             ---cHHHHHHHHHHcCCHHHHh-----hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence               1345788999999965544     35678999999999999999999999999999999999999999999999988


Q ss_pred             cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       158 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      +|+|+|+++|++. .+...+|++++|++|++++.|
T Consensus       175 ~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         175 QGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             CCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence            8999999999964 677789999999999998765

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=2e-36  Score=300.32  Aligned_cols=173  Identities=33%  Similarity=0.494  Sum_probs=149.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+++|+|+.++.     +|+|.++|.++...        .+.++|++|++.+++.+||.||+.+....+ 
T Consensus        34 ~G~nGsGKSTLl~~i~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-  107 (214)
T TIGR02673        34 TGPSGAGKTTLLKLLYGALTPS-----RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR-  107 (214)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc-
Confidence            5999999999999999999876     89999999987531        235999999999999999999999876532 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        .....+.+++++++++.+||.+..+     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus       108 --~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  180 (214)
T TIGR02673       108 --GKKEREIQRRVGAALRQVGLEHKAD-----AFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLL  180 (214)
T ss_pred             --CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence              1233445567899999999965433     356789999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  187 (607)
                      ++++++|+|||+++|++. ++...||++++|++|+
T Consensus       181 ~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       181 KRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence            999878999999999974 7778899999999885

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=2.3e-36  Score=299.76  Aligned_cols=174  Identities=31%  Similarity=0.456  Sum_probs=150.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+++|+|..+++     +|+|.++|.++...        ++.++|++|++.+++.+||+||+.+....+.
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~  107 (214)
T cd03292          33 VGPSGAGKSTLLKLIYKEELPT-----SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG  107 (214)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC
Confidence            5999999999999999999886     89999999876431        2359999999999999999999998765431


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                         ...++.+++++++++.+||.+..+     ..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus       108 ---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l  179 (214)
T cd03292         108 ---VPPREIRKRVPAALELVGLSHKHR-----ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL  179 (214)
T ss_pred             ---CCHHHHHHHHHHHHHHcCCHHHhh-----CChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence               234455567889999999965444     456789999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCee
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i  188 (607)
                      ++++++|+|||+++|++ ..+...||++++|++|++
T Consensus       180 ~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         180 KKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence            99987899999999996 467778999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=2.5e-36  Score=299.16  Aligned_cols=178  Identities=30%  Similarity=0.458  Sum_probs=151.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|.++...   ++.++|++|++.+++.+||+||+.+....+.  .. 
T Consensus        30 ~G~nGsGKSTLl~~l~gl~~~~-----~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-  101 (211)
T cd03298          30 VGPSGSGKSTLLNLIAGFETPQ-----SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-  101 (211)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-
Confidence            5999999999999999999887     89999999886432   3469999999999999999999987643211  11 


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      .++.+++++++++.+||.+..+     ..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       102 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~  176 (211)
T cd03298         102 TAEDRQAIEVALARVGLAGLEK-----RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA  176 (211)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence            1234557889999999965444     35678999999999999999999999999999999999999999999999975


Q ss_pred             -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                       .|+|||+++|++ ..+...||++++|++|+++..|
T Consensus       177 ~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         177 ETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             hcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence             489999999996 4677889999999999998654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=3.2e-36  Score=299.11  Aligned_cols=176  Identities=32%  Similarity=0.479  Sum_probs=151.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---------ccceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||+++|+|+++++     +|+|.++|.++..         ..++++|++|++.+++.+|++||+.+.....
T Consensus        29 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~  103 (214)
T cd03297          29 FGASGAGKSTLLRCIAGLEKPD-----GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK  103 (214)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence            5999999999999999999887     8999999987642         1245999999999999999999998765321


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                           .....++++.++++.+|+.+..+     ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus       104 -----~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  173 (214)
T cd03297         104 -----RNREDRISVDELLDLLGLDHLLN-----RYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE  173 (214)
T ss_pred             -----CHHHHHHHHHHHHHHcCCHhHhh-----cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence                 22334567889999999965443     45678999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       152 L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      |++++++ |+|||+++|++. .+...+|++++|++|+++..|
T Consensus       174 l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         174 LKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             HHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence            9999865 899999999964 677889999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4e-37  Score=308.64  Aligned_cols=183  Identities=28%  Similarity=0.383  Sum_probs=167.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      ||-||||||||+++|+++.+|+     .|+|.++|.++...         ++++++|+|+..|+|+.||.||..|+.+++
T Consensus        60 MGLSGSGKSTLvR~~NrLiept-----~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~  134 (386)
T COG4175          60 MGLSGSGKSTLVRLLNRLIEPT-----RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ  134 (386)
T ss_pred             EecCCCCHHHHHHHHhccCCCC-----CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec
Confidence            7999999999999999999998     89999999986542         246999999999999999999999999876


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                         ..+++++++++.+.|+.+||+..+     +.++++|||||||||.|||||+.+|+||++|||+|.|||--+.++-+-
T Consensus       135 ---Gv~~~er~~~a~~~l~~VgL~~~~-----~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQde  206 (386)
T COG4175         135 ---GVPKAEREERALEALELVGLEGYA-----DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE  206 (386)
T ss_pred             ---CCCHHHHHHHHHHHHHHcCchhhh-----hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHH
Confidence               467899999999999999996655     457899999999999999999999999999999999999999999999


Q ss_pred             HHHHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCc
Q 007344          152 LRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE  197 (607)
Q Consensus       152 L~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~  197 (607)
                      |.+|. +-++|||++|||. ++..++-|||.+|++|+++..|++++.
T Consensus       207 Ll~Lq~~l~KTIvFitHDL-dEAlriG~rIaimkdG~ivQ~Gtp~eI  252 (386)
T COG4175         207 LLELQAKLKKTIVFITHDL-DEALRIGDRIAIMKDGEIVQVGTPEEI  252 (386)
T ss_pred             HHHHHHHhCCeEEEEecCH-HHHHhccceEEEecCCeEEEeCCHHHH
Confidence            99986 5589999999995 688899999999999999999999873

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=2.7e-36  Score=304.84  Aligned_cols=183  Identities=28%  Similarity=0.400  Sum_probs=157.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+++|+|..+++     +|+|.++|.++...       +++++|++|++.+++.+||+||+.+.....  
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--  105 (240)
T PRK09493         33 IGPSGSGKSTLLRCINKLEEIT-----SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--  105 (240)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--
Confidence            5999999999999999999887     89999999986531       235999999999999999999998764211  


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                      ......+.++++.++++.+||.+..|     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       106 ~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~  180 (240)
T PRK09493        106 RGASKEEAEKQARELLAKVGLAERAH-----HYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQ  180 (240)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChHHHh-----cChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            11234455667899999999965443     4567899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++|+|||+++|++. .+...||++++|++|++++.|+.++
T Consensus       181 ~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  222 (240)
T PRK09493        181 DLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQV  222 (240)
T ss_pred             HHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHH
Confidence            99878999999999964 6778899999999999999987654

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=1.7e-36  Score=302.38  Aligned_cols=180  Identities=28%  Similarity=0.441  Sum_probs=153.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +|||||||||||++|+|+.+++     +|+|.++|.++...      ++.++|++|++.+++.+|++||+.+......  
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--  104 (222)
T cd03224          32 LGRNGAGKTTLLKTIMGLLPPR-----SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR--  104 (222)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC--
Confidence            6999999999999999999887     89999999876432      2359999999999999999999988764321  


Q ss_pred             CCCHHHHHHHHHHHHHHc-CCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKL-GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                         ..+.++++.++++.+ ++.+..     +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+
T Consensus       105 ---~~~~~~~~~~~l~~~~~l~~~~-----~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  176 (222)
T cd03224         105 ---RAKRKARLERVYELFPRLKERR-----KQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIR  176 (222)
T ss_pred             ---chhHHHHHHHHHHHHHhhhhhh-----hCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHH
Confidence               123345567788887 464433     34577899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++|+|||+++|++ ..+...+|++++|++|+++..|++++
T Consensus       177 ~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~  218 (222)
T cd03224         177 ELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAE  218 (222)
T ss_pred             HHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHH
Confidence            9987889999999996 46788899999999999999887543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.5e-37  Score=300.69  Aligned_cols=186  Identities=32%  Similarity=0.472  Sum_probs=164.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc------ceEEEEccCCCCCCCCCHHHHHHHHHHccC--
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA------YKFAYVRQEDLFFSQLTVRETLSLAAELQL--   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~------~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~--   72 (607)
                      +||||||||||+|+|+|.++|+     +|+|.++|+++....      ..++--+|...+|++|||.||+..++..+.  
T Consensus        36 IGPNGAGKTTlfNlitG~~~P~-----~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~  110 (250)
T COG0411          36 IGPNGAGKTTLFNLITGFYKPS-----SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGL  110 (250)
T ss_pred             ECCCCCCceeeeeeecccccCC-----CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhh
Confidence            6999999999999999999998     899999999886542      237888999999999999999998865331  


Q ss_pred             ------CCC-CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 007344           73 ------PEI-LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQA  145 (607)
Q Consensus        73 ------~~~-~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~  145 (607)
                            +.. ...++..+++.++|+.+||.+.+|+..|     +||+|||||+.|||||+++|++|+||||.+||.+..+
T Consensus       111 ~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~  185 (250)
T COG0411         111 SGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEET  185 (250)
T ss_pred             hhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHH
Confidence                  111 2346667889999999999888877554     6999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCc
Q 007344          146 EKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE  197 (607)
Q Consensus       146 ~~i~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~  197 (607)
                      .++.+.++++++ .|.||+++.|+.. .++.+||||++|+.|++++.|+|+++
T Consensus       186 ~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~~IAeG~P~eV  237 (250)
T COG0411         186 EELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGEVIAEGTPEEV  237 (250)
T ss_pred             HHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCcCcccCCHHHH
Confidence            999999999997 5699999999974 89999999999999999999999873

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=3e-36  Score=306.21  Aligned_cols=183  Identities=31%  Similarity=0.416  Sum_probs=156.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------------cceEEEEccCCCCCCCCCHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------------AYKFAYVRQEDLFFSQLTVRETLSLA   67 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------------~~~i~yv~Q~~~l~~~lTV~E~l~~~   67 (607)
                      +||||||||||+++|+|+++++     +|+|.++|.++...             ++.++||+|++.+++.+||+||+.+.
T Consensus        35 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  109 (250)
T PRK11264         35 IGPSGSGKTTLLRCINLLEQPE-----AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG  109 (250)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHH
Confidence            5999999999999999999876     89999999876421             23599999999999999999999875


Q ss_pred             HHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344           68 AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        68 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~  147 (607)
                      .....  ....++.++++.++++.+||.+..|     ..++.|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus       110 ~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~  182 (250)
T PRK11264        110 PVIVK--GEPKEEATARARELLAKVGLAGKET-----SYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGE  182 (250)
T ss_pred             HHHhc--CCCHHHHHHHHHHHHHHcCCcchhh-----CChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence            43211  1234455667889999999965443     4567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       148 i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.+.|++++++|+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       183 l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  230 (250)
T PRK11264        183 VLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKA  230 (250)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence            99999999888999999999964 6778899999999999999887544

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.8e-36  Score=309.82  Aligned_cols=182  Identities=29%  Similarity=0.371  Sum_probs=155.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+++|+|+++++     +|+|.++|.++...     .+++|||+|++. .+...||.||+.|.....   
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---  108 (274)
T PRK13647         37 LGPNGAGKSTLLLHLNGIYLPQ-----RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---  108 (274)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCC-----ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---
Confidence            5999999999999999999887     89999999987542     245999999962 344579999999865432   


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ..+..+.+++++++++.+||.+..+     +.++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++
T Consensus       109 ~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~  183 (274)
T PRK13647        109 GLDKDEVERRVEEALKAVRMWDFRD-----KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDR  183 (274)
T ss_pred             CCCHHHHHHHHHHHHHHCCCHHHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence            2344555667899999999965444     45678999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++|.|||+++|++. .+.+.||++++|++|++++.|++++
T Consensus       184 ~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  224 (274)
T PRK13647        184 LHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSL  224 (274)
T ss_pred             HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence            9877999999999964 6778899999999999999998643

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-36  Score=315.85  Aligned_cols=181  Identities=27%  Similarity=0.390  Sum_probs=155.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC-----------------------------CccceEEEEccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS-----------------------------NKAYKFAYVRQE   51 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~-----------------------------~~~~~i~yv~Q~   51 (607)
                      +||||||||||+|+|+|.++++     +|+|.++|.+..                             ..++++|||+|+
T Consensus        39 iG~nGsGKSTLl~~L~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~  113 (305)
T PRK13651         39 IGQTGSGKTTFIEHLNALLLPD-----TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQF  113 (305)
T ss_pred             ECCCCCcHHHHHHHHhCCCCCC-----CcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeC
Confidence            6999999999999999999887     799999986531                             012459999998


Q ss_pred             C--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCC
Q 007344           52 D--LFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASP  128 (607)
Q Consensus        52 ~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p  128 (607)
                      +  .++ ..||+||+.|.....   ..+.++.++++.++++.+||. +..     ++.+..|||||||||+||++|+.+|
T Consensus       114 ~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGqkqrvalA~aL~~~P  184 (305)
T PRK13651        114 AEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYL-----QRSPFELSGGQKRRVALAGILAMEP  184 (305)
T ss_pred             cccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhh-----hCChhhCCHHHHHHHHHHHHHHhCC
Confidence            5  445 469999999876532   245566677899999999995 333     3467889999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          129 SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       129 ~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++|+|||||+|||+.++..+++.|++++++|+|||+++|++ ..+.+.+||+++|++|++++.|++++
T Consensus       185 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~adrv~vl~~G~i~~~g~~~~  251 (305)
T PRK13651        185 DFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DNVLEWTKRTIFFKDGKIIKDGDTYD  251 (305)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999988899999999996 46788899999999999999998765

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=4e-36  Score=299.68  Aligned_cols=174  Identities=29%  Similarity=0.458  Sum_probs=148.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------c-ceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------A-YKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~-~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +|||||||||||++|+|..++.     +|+|.++|.++...        + ++++|++|++.+++.+||+||+.+....+
T Consensus        37 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~  111 (221)
T TIGR02211        37 VGSSGSGKSTLLHLLGGLDNPT-----SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG  111 (221)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc
Confidence            6999999999999999999887     89999999886431        1 35999999999999999999999865432


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                         .....+..+++.++++.+||.+..+     +.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus       112 ---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~  183 (221)
T TIGR02211       112 ---KKSVKEAKERAYEMLEKVGLEHRIN-----HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL  183 (221)
T ss_pred             ---CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence               1233444567889999999965443     45678999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeee
Q 007344          152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV  189 (607)
Q Consensus       152 L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv  189 (607)
                      |+++++ .|+|||+++|++. .+. .+|++++|++|+++
T Consensus       184 l~~~~~~~~~tii~~tH~~~-~~~-~~d~v~~l~~G~i~  220 (221)
T TIGR02211       184 MLELNRELNTSFLVVTHDLE-LAK-KLDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHHHhcCCEEEEEeCCHH-HHh-hcCEEEEEeCCEec
Confidence            999986 4899999999975 454 47999999999875

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-36  Score=322.45  Aligned_cols=176  Identities=26%  Similarity=0.461  Sum_probs=154.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---------ccceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +|||||||||||++|+|+++++     +|+|.++|+++..         ..++++||+|+..+++.+||+||+.+...  
T Consensus        30 ~G~nGsGKSTLl~~iaGl~~p~-----~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~--  102 (352)
T PRK11144         30 FGRSGAGKTSLINAISGLTRPQ-----KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA--  102 (352)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh--
Confidence            5999999999999999999887     8999999987642         13469999999999999999999988642  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                             ...+++++++++.+||.+..+     +.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus       103 -------~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~  170 (352)
T PRK11144        103 -------KSMVAQFDKIVALLGIEPLLD-----RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY  170 (352)
T ss_pred             -------hhhHHHHHHHHHHcCCchhhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence                   112356889999999965544     46778999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       152 L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |++++++ |+|+|++||++ .++..++|++++|++|+++..|++++
T Consensus       171 L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~  215 (352)
T PRK11144        171 LERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEE  215 (352)
T ss_pred             HHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHH
Confidence            9999865 89999999996 47888999999999999999998765

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.3e-37  Score=294.44  Aligned_cols=184  Identities=28%  Similarity=0.478  Sum_probs=165.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc------ceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA------YKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~------~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +|||||||||.+.++.|+.+++     +|.|.+||.+++...      ..+||+||+...|..|||+||+....+.+.. 
T Consensus        36 LGPNGAGKTT~Fymi~Glv~~d-----~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-  109 (243)
T COG1137          36 LGPNGAGKTTTFYMIVGLVRPD-----SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-  109 (243)
T ss_pred             ECCCCCCceeEEEEEEEEEecC-----CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-
Confidence            5999999999999999999998     899999999887642      2399999999999999999999998887632 


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ...+++.+.+++++|+++++.|++|.     +...||||||||+.|||||+.+|+.++||||++|.||.+..+|-++++.
T Consensus       110 d~~~~~~~~~l~~LL~ef~i~hlr~~-----~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~  184 (243)
T COG1137         110 DLKKAERKEELDALLEEFHITHLRDS-----KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH  184 (243)
T ss_pred             chhHHHHHHHHHHHHHHhchHHHhcC-----cccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHH
Confidence            23345666778999999999777765     4568999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |++.|..|++|-|+.+ +...+|||.+++++|++.++|++++
T Consensus       185 L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~e  225 (243)
T COG1137         185 LKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEE  225 (243)
T ss_pred             HHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHH
Confidence            9999999999999976 6788999999999999999999877

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.2e-36  Score=305.09  Aligned_cols=181  Identities=30%  Similarity=0.482  Sum_probs=156.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +|||||||||||++|+|+.+++     +|+|.++|.++.....+++|++|++.+++.+||.||+.+....+   .....+
T Consensus        33 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~  104 (255)
T PRK11248         33 LGPSGCGKTTLLNLIAGFVPYQ-----HGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQ  104 (255)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHH
Confidence            6999999999999999999887     89999999987554456999999999999999999998865432   123444


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g  159 (607)
                      ..+++.++++.+||.+..+     +.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++ ++|
T Consensus       105 ~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g  179 (255)
T PRK11248        105 RLEIAHQMLKKVGLEGAEK-----RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETG  179 (255)
T ss_pred             HHHHHHHHHHHcCChhHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence            5567899999999965443     4567899999999999999999999999999999999999999999999986 468


Q ss_pred             CeEEEEecCChhHHHhhhcceeeec--CCeeeeeCCCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLT--EGKLVYAGPAR  195 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~--~G~iv~~G~~~  195 (607)
                      +|||+++|++. .+...||++++|+  +|+++..++.+
T Consensus       180 ~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~  216 (255)
T PRK11248        180 KQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN  216 (255)
T ss_pred             CEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence            99999999974 7788899999998  59999887654

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.8e-36  Score=321.46  Aligned_cols=180  Identities=29%  Similarity=0.476  Sum_probs=156.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---------ccceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||||+|+|+.+++     +|+|.++|+++..         .+++++|++|++.+++.+||+||+.+.....
T Consensus        29 ~G~nGsGKSTLl~~iaGl~~p~-----~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~  103 (354)
T TIGR02142        29 FGRSGSGKTTLIRLIAGLTRPD-----EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA  103 (354)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc
Confidence            5999999999999999999887     8999999987632         1345999999999999999999999875421


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                           ...+.+++++++++.+||.+..|     +.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus       104 -----~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~  173 (354)
T TIGR02142       104 -----RPSERRISFERVIELLGIGHLLG-----RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPY  173 (354)
T ss_pred             -----ChhHHHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence                 12344567899999999965544     45678999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       152 L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |++++++ |+|+|++||++. ++..++|++++|++|+++..|++++
T Consensus       174 L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  218 (354)
T TIGR02142       174 LERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAE  218 (354)
T ss_pred             HHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHH
Confidence            9999865 899999999964 7788899999999999999998655

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=4.1e-36  Score=308.73  Aligned_cols=183  Identities=26%  Similarity=0.373  Sum_probs=156.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +|||||||||||++|+|+.+++     +|+|.++|.++...        +++++|++|+..+++.+||.||+.+......
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~  113 (269)
T PRK11831         39 MGPSGIGKTTLLRLIGGQIAPD-----HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT  113 (269)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc
Confidence            5999999999999999999886     89999999876431        2359999999999999999999988643221


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..+.++.++++.++++.+||.+..+.     .++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus       114 --~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l  186 (269)
T PRK11831        114 --QLPAPLLHSTVMMKLEAVGLRGAAKL-----MPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLI  186 (269)
T ss_pred             --CCCHHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence              12334445678889999999765543     56789999999999999999999999999999999999999999999


Q ss_pred             HHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++++ |+|||+++|++ ..+...||++++|++|++++.|++++
T Consensus       187 ~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~  230 (269)
T PRK11831        187 SELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQA  230 (269)
T ss_pred             HHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHH
Confidence            999764 89999999996 46788899999999999999987654

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-36  Score=304.55  Aligned_cols=183  Identities=25%  Similarity=0.435  Sum_probs=157.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|.++...      +++++|++|++.+++.+||.||+.+....+.  
T Consensus        35 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--  107 (241)
T PRK10895         35 LGPNGAGKTTTFYMVVGIVPRD-----AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--  107 (241)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--
Confidence            5999999999999999999887     89999999886431      2459999999999999999999987654321  


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ..+.++.+++++++++.+|+.+..     +..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.+++
T Consensus       108 ~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (241)
T PRK10895        108 DLSAEQREDRANELMEEFHIEHLR-----DSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEH  182 (241)
T ss_pred             ccCHHHHHHHHHHHHHHcCCHHHh-----hcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            123344556789999999996443     446778999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++|+|||+++|++ ..+...+|++++|++|++++.|++++
T Consensus       183 ~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~  223 (241)
T PRK10895        183 LRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTE  223 (241)
T ss_pred             HHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHH
Confidence            988899999999996 46788899999999999999887654

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.2e-36  Score=315.49  Aligned_cols=181  Identities=26%  Similarity=0.401  Sum_probs=154.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------------------cceEEEEccCC--CCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------------------AYKFAYVRQED--LFFSQ   57 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------------------~~~i~yv~Q~~--~l~~~   57 (607)
                      +|+||||||||+|+|+|+++++     +|+|.++|.++...                     ++++|||+|++  .+++ 
T Consensus        58 ~G~nGsGKSTLl~~L~Gl~~p~-----~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-  131 (320)
T PRK13631         58 IGNSGSGKSTLVTHFNGLIKSK-----YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-  131 (320)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-
Confidence            5999999999999999999887     89999999875321                     24599999986  5666 


Q ss_pred             CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 007344           58 LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEP  136 (607)
Q Consensus        58 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEP  136 (607)
                      .||+||+.+.....   ..+.++..++++++++.+||. +..     ++.+..|||||||||+||++|+.+|++|+||||
T Consensus       132 ~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEP  203 (320)
T PRK13631        132 DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYL-----ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEP  203 (320)
T ss_pred             chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHh-----cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            49999998875422   234555667889999999995 233     446778999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          137 TTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       137 tsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |+|||+.++..+++.|++++++|+|||+++|++. .+...||++++|++|+++..|++++
T Consensus       204 tsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~  262 (320)
T PRK13631        204 TAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYE  262 (320)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9999999999999999999888999999999964 6778899999999999999998765

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.4e-36  Score=297.93  Aligned_cols=171  Identities=35%  Similarity=0.496  Sum_probs=145.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--cceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +|||||||||||++|+|+.+++     +|+|.++|.++...  +++++|++|++. .+..+||+||+.+.....     .
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-----~  101 (205)
T cd03226          32 TGKNGAGKTTLAKILAGLIKES-----SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL-----D  101 (205)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhc-----C
Confidence            5999999999999999999887     89999999886432  346999999974 334579999998865422     1


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      .  .+++++++++.+||.+..+     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       102 ~--~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  174 (205)
T cd03226         102 A--GNEQAETVLKDLDLYALKE-----RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA  174 (205)
T ss_pred             c--cHHHHHHHHHHcCCchhcC-----CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence            1  1246789999999975544     45678999999999999999999999999999999999999999999999988


Q ss_pred             cCCeEEEEecCChhHHHhhhcceeeecCCeee
Q 007344          158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV  189 (607)
Q Consensus       158 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv  189 (607)
                      +|+|||+++|++. ++...+|++++|++|+++
T Consensus       175 ~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         175 QGKAVIVITHDYE-FLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence            8999999999974 677889999999999875

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=4.4e-36  Score=316.62  Aligned_cols=185  Identities=26%  Similarity=0.401  Sum_probs=159.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~   70 (607)
                      +|+||||||||+++|+|+++++     +|+|.++|+++...        +++++||+|++  .+++.+||.||+.+....
T Consensus        53 vG~sGsGKSTLlk~i~Gl~~p~-----~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~  127 (331)
T PRK15079         53 VGESGCGKSTFARAIIGLVKAT-----DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT  127 (331)
T ss_pred             ECCCCCCHHHHHHHHHCCCCCC-----CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence            6999999999999999999886     89999999987542        24699999997  688899999999987553


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      ..+ ..++++.++++.++++.+||.+    .+.++++++|||||||||+||+||+.+|++|++||||+|||..++.++++
T Consensus       128 ~~~-~~~~~~~~~~~~~~l~~vgl~~----~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~  202 (331)
T PRK15079        128 YHP-KLSRQEVKDRVKAMMLKVGLLP----NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN  202 (331)
T ss_pred             hcc-CCCHHHHHHHHHHHHHHcCCCh----HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence            311 2355667778899999999942    23456788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +|+++.++ |.|+|++||++ ..+..++|++++|++|++++.|++++
T Consensus       203 lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~~G~ive~g~~~~  248 (331)
T PRK15079        203 LLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMYLGHAVELGTYDE  248 (331)
T ss_pred             HHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99999864 89999999996 47778899999999999999998654

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=5e-36  Score=320.20  Aligned_cols=182  Identities=27%  Similarity=0.392  Sum_probs=159.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCee----CCCc---------cceEEEEccCCCCCCCCCHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP----SSNK---------AYKFAYVRQEDLFFSQLTVRETLSLA   67 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~----~~~~---------~~~i~yv~Q~~~l~~~lTV~E~l~~~   67 (607)
                      +||||||||||+|+|+|+++++     +|+|.++|++    +...         +++++||+|+..+++.+||+||+.+.
T Consensus        56 ~G~nGsGKSTLlr~L~Gl~~p~-----~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~  130 (382)
T TIGR03415        56 MGLSGSGKSSLLRAVNGLNPVS-----RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFG  130 (382)
T ss_pred             ECCCCCcHHHHHHHHhCCCCCC-----CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHH
Confidence            6999999999999999999987     8999999962    2211         13599999999999999999999998


Q ss_pred             HHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344           68 AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        68 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~  147 (607)
                      ...+   ..++++.++++.++++.+||.+..|     .++.+|||||||||+|||+|+.+|+||+|||||+|||+.++.+
T Consensus       131 ~~~~---g~~~~~~~~~a~e~le~vgL~~~~~-----~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~  202 (382)
T TIGR03415       131 LEMQ---GMPEAERRKRVDEQLELVGLAQWAD-----KKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQ  202 (382)
T ss_pred             HHhc---CCCHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence            6543   2345666778999999999965544     4567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          148 VMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       148 i~~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.+.|++++++ |+|||++||++. ++.+++|++++|++|+++..|++++
T Consensus       203 l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~e  251 (382)
T TIGR03415       203 LQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEE  251 (382)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence            99999999864 899999999964 7788999999999999999998765

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=6.3e-36  Score=298.63  Aligned_cols=175  Identities=26%  Similarity=0.384  Sum_probs=151.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+++|+|..+++     +|+|.++|.++...        ++.++|++|++.+++.+||+||+.+....+ 
T Consensus        34 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-  107 (222)
T PRK10908         34 TGHSGAGKSTLLKLICGIERPS-----AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA-  107 (222)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc-
Confidence            5999999999999999999887     89999999876431        245999999998888899999998875432 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..+.++..++++++++.+|+.+..+     +.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus       108 --~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  180 (222)
T PRK10908        108 --GASGDDIRRRVSAALDKVGLLDKAK-----NFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF  180 (222)
T ss_pred             --CCCHHHHHHHHHHHHHHcCChhhhh-----CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence              1234445567889999999965443     456789999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeee
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV  189 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv  189 (607)
                      ++++++|.|+|+++|++. .+...+|++++|++|+++
T Consensus       181 ~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~  216 (222)
T PRK10908        181 EEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH  216 (222)
T ss_pred             HHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence            999877999999999964 677889999999999985

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=8.3e-36  Score=298.52  Aligned_cols=180  Identities=28%  Similarity=0.429  Sum_probs=148.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~   70 (607)
                      +|||||||||||++|+|..+++     +|+|.++|+++...        ++.++|++|++  .+++.+||+||+.+....
T Consensus        37 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~  111 (228)
T cd03257          37 VGESGSGKSTLARAILGLLKPT-----SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI  111 (228)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHh
Confidence            5999999999999999999887     89999999886431        24599999998  567789999999886544


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           71 QLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ... ....+..+..++++++.+++. +..     +..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.
T Consensus       112 ~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~  185 (228)
T cd03257         112 HGK-LSKKEARKEAVLLLLVGVGLPEEVL-----NRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL  185 (228)
T ss_pred             ccC-CcHHHHHHHHHHHHHHHCCCChhHh-----hCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence            321 111111222236889999984 233     3456789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          150 EALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       150 ~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      +.|++++++ |+|||+++|++. .+...||++++|++|+++..|
T Consensus       186 ~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         186 DLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence            999999865 899999999974 677789999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=3.4e-36  Score=298.58  Aligned_cols=180  Identities=31%  Similarity=0.487  Sum_probs=147.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCC--CCCCHHHHHHHHHHccCCC-CCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFF--SQLTVRETLSLAAELQLPE-ILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~--~~lTV~E~l~~~~~~~~~~-~~~   77 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|.++...+++++|++|++.+.  ..+||+||+.+........ ...
T Consensus        31 ~G~nGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~  105 (213)
T cd03235          31 VGPNGAGKSTLLKAILGLLKPT-----SGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRL  105 (213)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCC-----CCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCC
Confidence            5999999999999999999887     8999999987643345699999998763  3379999998864321100 011


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      .++.+++++++++.+|+.+..+     +.+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       106 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  180 (213)
T cd03235         106 SKADKAKVDEALERVGLSELAD-----RQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR  180 (213)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence            2334567889999999965443     45678999999999999999999999999999999999999999999999987


Q ss_pred             cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       158 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      +|+|||+++|++. ++...+|++++|++| +++.|
T Consensus       181 ~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         181 EGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             cCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence            8999999999964 677889999999876 55554

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-36  Score=309.35  Aligned_cols=181  Identities=27%  Similarity=0.396  Sum_probs=156.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCC-CCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQED-LFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+++|+|+++|.     +|+|.++|.++...     ++++|||+|++ ..++..||+||+.+.....   
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---  110 (279)
T PRK13650         39 IGHNGSGKSTTVRLIDGLLEAE-----SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---  110 (279)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---
Confidence            5999999999999999999887     89999999987542     24699999997 4667789999999875432   


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ..+.++..++++++++.+||.+..|     +.++.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++
T Consensus       111 ~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~  185 (279)
T PRK13650        111 GIPHEEMKERVNEALELVGMQDFKE-----REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKG  185 (279)
T ss_pred             CCCHHHHHHHHHHHHHHCCCHhHhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            2345566678999999999965544     45678999999999999999999999999999999999999999999999


Q ss_pred             HHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ |+|||+++|++. .+ ..||++++|++|+++..|++++
T Consensus       186 l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~  226 (279)
T PRK13650        186 IRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRE  226 (279)
T ss_pred             HHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence            9865 999999999975 45 4799999999999999998765

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.4e-36  Score=310.14  Aligned_cols=181  Identities=28%  Similarity=0.412  Sum_probs=155.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQED--LFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~   69 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|+++...         +..++|++|++  .++ .+||.||+.+...
T Consensus        39 iG~NGaGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~  112 (287)
T PRK13641         39 VGHTGSGKSTLMQHFNALLKPS-----SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPK  112 (287)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHH
Confidence            6999999999999999999987     89999999976421         23599999996  355 5799999988654


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      ..   ....++..++++++++.+||. +..     ++.++.||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus       113 ~~---~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l  184 (287)
T PRK13641        113 NF---GFSEDEAKEKALKWLKKVGLSEDLI-----SKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEM  184 (287)
T ss_pred             Hc---CCCHHHHHHHHHHHHHHcCCChhHh-----hCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence            32   234455667789999999995 333     446778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|++++++|.|||+++|++ ..+...||++++|++|++++.|++++
T Consensus       185 ~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~  231 (287)
T PRK13641        185 MQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASPKE  231 (287)
T ss_pred             HHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999999987899999999996 47788999999999999999998654

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=6.9e-36  Score=295.82  Aligned_cols=173  Identities=35%  Similarity=0.477  Sum_probs=147.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+|+|+|+++++     +|+|.++|.++...     .+.++|++|++. .++.+||+||+.+.....   
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---  104 (211)
T cd03225          33 VGPNGSGKSTLLRLLNGLLGPT-----SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---  104 (211)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---
Confidence            5999999999999999999887     89999999876532     245999999974 366789999998865432   


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      .....+.+++++++++.+||.+..+     +.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus       105 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~  179 (211)
T cd03225         105 GLPEEEIEERVEEALELVGLEGLRD-----RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK  179 (211)
T ss_pred             CCCHHHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            1233444567889999999965443     45678999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  187 (607)
                      ++++|+|||+++|++. ++...||++++|++|+
T Consensus       180 ~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~  211 (211)
T cd03225         180 LKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK  211 (211)
T ss_pred             HHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence            9877999999999964 7778899999999885

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=8.6e-36  Score=300.46  Aligned_cols=181  Identities=32%  Similarity=0.532  Sum_probs=154.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|.++...    .+.++|++|++.+++.+||+||+.+....+   ..
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~  104 (236)
T TIGR03864        33 LGPNGAGKSTLFSLLTRLYVAQ-----EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GL  104 (236)
T ss_pred             ECCCCCCHHHHHHHHhCCcCCC-----ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CC
Confidence            5999999999999999999887     89999999876432    246999999998888999999998865542   12


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      ...+..+.+.++++.+||.+..+     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus       105 ~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~  179 (236)
T TIGR03864       105 SRAEARERIAALLARLGLAERAD-----DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC  179 (236)
T ss_pred             CHHHHHHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence            33445567889999999965544     3567899999999999999999999999999999999999999999999998


Q ss_pred             h-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 Q-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      + +|+|+|+++|++. .+. .+|++++|++|++++.|++++
T Consensus       180 ~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~  218 (236)
T TIGR03864       180 RDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAE  218 (236)
T ss_pred             HhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHH
Confidence            5 6899999999975 454 499999999999998887544

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=8.7e-36  Score=304.26  Aligned_cols=183  Identities=30%  Similarity=0.385  Sum_probs=156.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC------------------ccceEEEEccCCCCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------------------KAYKFAYVRQEDLFFSQLTVRE   62 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~------------------~~~~i~yv~Q~~~l~~~lTV~E   62 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|.++..                  ..++++|++|++.+++.+||+|
T Consensus        37 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~e  111 (257)
T PRK10619         37 IGSSGSGKSTFLRCINFLEKPS-----EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE  111 (257)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHH
Confidence            5999999999999999999886     8999999987632                  1245999999999999999999


Q ss_pred             HHHHHHH-ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 007344           63 TLSLAAE-LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLD  141 (607)
Q Consensus        63 ~l~~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD  141 (607)
                      |+.++.. ..   .....+.++++.++++.+||.+..    .++.+++||||||||++||++|+.+|++++|||||+|||
T Consensus       112 nl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD  184 (257)
T PRK10619        112 NVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERA----QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD  184 (257)
T ss_pred             HHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhh----hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            9987542 21   123445567788999999996432    134578999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          142 AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       142 ~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.++..+.+.|++++++|+|||+++|++. .+...||++++|++|++++.|+.++
T Consensus       185 ~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  238 (257)
T PRK10619        185 PELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQ  238 (257)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence            99999999999999888999999999964 6777899999999999999887654

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=8.1e-36  Score=295.66  Aligned_cols=175  Identities=32%  Similarity=0.467  Sum_probs=150.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||||+|+|..+++     +|+|.++|.++...       .+.++|++|++.+++.+|++||+.+.....  
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--  104 (213)
T cd03262          32 IGPSGSGKSTLLRCINLLEEPD-----SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV--  104 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh--
Confidence            5999999999999999999887     89999999886321       245999999999999999999998864311  


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                      .....++.+++++++++.+|+.+..+     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       105 ~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~  179 (213)
T cd03262         105 KGMSKAEAEERALELLEKVGLADKAD-----AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK  179 (213)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHhHhh-----hCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence            11234445567889999999965443     4567899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCee
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i  188 (607)
                      +++++|+|||+++|++. .+...+|++++|++|++
T Consensus       180 ~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         180 DLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence            99888999999999964 67788999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=8.3e-36  Score=304.29  Aligned_cols=175  Identities=28%  Similarity=0.383  Sum_probs=152.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+|+|+|+.+++     +|+|.++|.++....++++|++|++.+++.+||+||+.+...       .  .
T Consensus        44 ~G~NGsGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~--~  109 (257)
T PRK11247         44 VGRSGCGKSTLLRLLAGLETPS-----AGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLK-------G--Q  109 (257)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhccc-------c--h
Confidence            5999999999999999999887     899999998765545679999999999998999999987521       0  1


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g  159 (607)
                      .++++.++++.+||.+..+     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus       110 ~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~  184 (257)
T PRK11247        110 WRDAALQALAAVGLADRAN-----EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG  184 (257)
T ss_pred             HHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            2356788999999965443     45678999999999999999999999999999999999999999999999864 58


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPAR  195 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~  195 (607)
                      +|||+++|++. .+...||++++|++|++++.|+.+
T Consensus       185 ~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        185 FTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             CEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence            99999999964 677889999999999999988754

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.1e-36  Score=303.56  Aligned_cols=185  Identities=25%  Similarity=0.393  Sum_probs=154.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC-
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-   73 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|.++...      +..++|++|++.+++.+||+||+.+....... 
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~  111 (255)
T PRK11300         37 IGPNGAGKTTVFNCLTGFYKPT-----GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKT  111 (255)
T ss_pred             ECCCCCCHHHHHHHHhCCcCCC-----cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccc
Confidence            5999999999999999999887     89999999986532      12489999999999999999999986432110 


Q ss_pred             ----------C-CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 007344           74 ----------E-ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDA  142 (607)
Q Consensus        74 ----------~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~  142 (607)
                                . .....+..++++++++.+||.+..     ++.++.||||||||++||++|+.+|++|+|||||+|||+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~  186 (255)
T PRK11300        112 GLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHA-----NRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNP  186 (255)
T ss_pred             hhhhhhccccccccchhHHHHHHHHHHHhCChhhhh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCH
Confidence                      0 001123345688899999996544     345678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          143 FQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       143 ~~~~~i~~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .++..+.+.|++++++ |+|||+++|++. .+...||++++|++|++++.|++++
T Consensus       187 ~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~  240 (255)
T PRK11300        187 KETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQGTPLANGTPEE  240 (255)
T ss_pred             HHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEecCCHHH
Confidence            9999999999999875 899999999964 7778899999999999999987654

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-36  Score=300.89  Aligned_cols=175  Identities=30%  Similarity=0.493  Sum_probs=156.5

Q ss_pred             CCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---------ccceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      |+||||||||+|+|+|+.+|+     +|.|.+||+.+.+         .++++|||+||-.+||++||+.||.|+...- 
T Consensus        31 G~SGsGKTslin~IaGL~rPd-----eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~-  104 (352)
T COG4148          31 GPSGSGKTSLINMIAGLTRPD-----EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS-  104 (352)
T ss_pred             cCCCCChhhHHHHHhccCCcc-----ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc-
Confidence            899999999999999999998     8999999986532         2467999999999999999999999986421 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                              .....+++.+.||++|..     ++++..|||||||||+|||||+++|++|+||||.+.||-....+++-.|
T Consensus       105 --------~~~~fd~iv~lLGI~hLL-----~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilpyl  171 (352)
T COG4148         105 --------MRAQFDQLVALLGIEHLL-----DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL  171 (352)
T ss_pred             --------chHhHHHHHHHhCcHHHH-----hhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHH
Confidence                    234577889999996655     4578899999999999999999999999999999999999999999999


Q ss_pred             HHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++|+++ +..|+.++|.+ .++.+++|+|++|++||+..+|+.++
T Consensus       172 ERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~  215 (352)
T COG4148         172 ERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEE  215 (352)
T ss_pred             HHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHH
Confidence            999965 67999999995 68999999999999999999999776

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.8e-35  Score=293.51  Aligned_cols=179  Identities=28%  Similarity=0.463  Sum_probs=152.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||+|+|+|..+++     +|+|.++|+++...   ++.++|++|++.+++.+|+.||+.+......   ..
T Consensus        30 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~---~~  101 (213)
T TIGR01277        30 MGPSGAGKSTLLNLIAGFIEPA-----SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KL  101 (213)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC---Cc
Confidence            5999999999999999999887     89999999886432   3469999999999999999999987543211   11


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      ..+.+++++++++.+||.+..+     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       102 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~  176 (213)
T TIGR01277       102 NAEQQEKVVDAAQQVGIADYLD-----RLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS  176 (213)
T ss_pred             cHHHHHHHHHHHHHcCcHHHhh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence            1223456888999999965443     45678999999999999999999999999999999999999999999999986


Q ss_pred             c-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCC
Q 007344          158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP  193 (607)
Q Consensus       158 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~  193 (607)
                      + |+|||+++|++. .+...+|++++|++|+++..|.
T Consensus       177 ~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       177 ERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             hcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence            4 899999999964 6778899999999999998874

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.4e-36  Score=293.59  Aligned_cols=185  Identities=28%  Similarity=0.490  Sum_probs=171.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +|||||||||.+++|.|++.++     +|+|.++|.+++.. ..+|||.|.+.-|++.+||.|.|.|.|+++   .++++
T Consensus        34 lG~NGAGKTTtfRmILglle~~-----~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~  105 (300)
T COG4152          34 LGPNGAGKTTTFRMILGLLEPT-----EGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKA  105 (300)
T ss_pred             ecCCCCCccchHHHHhccCCcc-----CceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHH
Confidence            6999999999999999999998     89999999998765 467999999999999999999999999986   47788


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                      +.+++++.+|+++++....     .+++++||.|++|++.+..+++++|++++||||+|||||.+.+.+-+.+.+++++|
T Consensus       106 e~~~~~~~wLer~~i~~~~-----~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G  180 (300)
T COG4152         106 EIQKKLQAWLERLEIVGKK-----TKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG  180 (300)
T ss_pred             HHHHHHHHHHHhccccccc-----cchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence            9999999999999996544     34678999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhh
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLA  200 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~  200 (607)
                      .|||+|+|.. ..+.++||++++|++|+.|.+|+.++ ...
T Consensus       181 atIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~-ir~  219 (300)
T COG4152         181 ATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVED-IRR  219 (300)
T ss_pred             CEEEEecchH-HHHHHHhhhhheecCCceEEeccHHH-HHH
Confidence            9999999996 47999999999999999999999877 444

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.7e-36  Score=299.65  Aligned_cols=182  Identities=27%  Similarity=0.459  Sum_probs=154.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||+++|+|+.++.     +|+|.++|+++...   .++++|++|++.+++.+|+.||+.+......  .. 
T Consensus        31 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-  102 (232)
T PRK10771         31 LGPSGAGKSTLLNLIAGFLTPA-----SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-  102 (232)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-
Confidence            5999999999999999999887     89999999986532   2469999999999999999999987532111  11 


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      .+..++++.++++.+||.+..|     +.++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       103 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~  177 (232)
T PRK10771        103 NAAQREKLHAIARQMGIEDLLA-----RLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQ  177 (232)
T ss_pred             CHHHHHHHHHHHHHcCcHHHHh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            1234567899999999965444     45678999999999999999999999999999999999999999999999975


Q ss_pred             -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                       .|+|+|+++|++. .+...+|++++|++|++++.|+.++
T Consensus       178 ~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~  216 (232)
T PRK10771        178 ERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDE  216 (232)
T ss_pred             hcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence             4899999999964 6778899999999999999987544

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=1.4e-35  Score=299.86  Aligned_cols=184  Identities=27%  Similarity=0.401  Sum_probs=155.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC-
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-   73 (607)
                      +|||||||||||++|+|.++++     +|+|.++|.++...      ++.++|++|++.+++.+||+||+.+....... 
T Consensus        34 ~G~nGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~  108 (242)
T TIGR03411        34 IGPNGAGKTTMMDVITGKTRPD-----EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSV  108 (242)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccccc
Confidence            5999999999999999999887     89999999876432      23599999999999999999999886532110 


Q ss_pred             -C---CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           74 -E---ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        74 -~---~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                       .   ....++.+++++++++.+|+.+..+     ..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~  183 (242)
T TIGR03411       109 FASLFFRLSAEEKDRIEEVLETIGLADEAD-----RLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA  183 (242)
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHH
Confidence             0   0122344567899999999965444     456789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.|+++++ ++|||+++|++. .+...||++++|++|++++.|++++
T Consensus       184 ~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~  228 (242)
T TIGR03411       184 ELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQ  228 (242)
T ss_pred             HHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHH
Confidence            99999976 789999999964 6788899999999999999887554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.8e-35  Score=300.06  Aligned_cols=190  Identities=28%  Similarity=0.417  Sum_probs=156.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|+||||||||||+|+|..+|.+....+|+|.++|+++...       ++.++|++|+..+++ +||+||+.+....+. 
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~-  110 (247)
T TIGR00972        33 IGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG-  110 (247)
T ss_pred             ECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC-
Confidence            59999999999999999997642222379999999987431       245999999998888 999999998765431 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ..+..+.+++++++++.+||.+... ..-+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       111 -~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  188 (247)
T TIGR00972       111 -IKDKKELDEIVEESLKKAALWDEVK-DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQ  188 (247)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCCcchh-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence             1234455667899999999961110 11234678899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++ +|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       189 ~~~~~-~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  229 (247)
T TIGR00972       189 ELKKK-YTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQ  229 (247)
T ss_pred             HHHhc-CeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99874 89999999964 6778899999999999999987654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-35  Score=300.50  Aligned_cols=182  Identities=30%  Similarity=0.417  Sum_probs=154.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC------C-----ccceEEEEccCCCCCCCCCHHHHHHHH-H
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS------N-----KAYKFAYVRQEDLFFSQLTVRETLSLA-A   68 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~------~-----~~~~i~yv~Q~~~l~~~lTV~E~l~~~-~   68 (607)
                      +||||||||||+|+|+|..+++     +|+|.++|.++.      .     .+++++|++|++.+++.+||.||+.+. .
T Consensus        34 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~  108 (242)
T PRK11124         34 LGPSGAGKSSLLRVLNLLEMPR-----SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC  108 (242)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH
Confidence            5999999999999999999887     899999998752      0     123599999999999999999999753 2


Q ss_pred             HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      ...   .....+..+++.++++.+||.+..+     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus       109 ~~~---~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l  180 (242)
T PRK11124        109 RVL---GLSKDQALARAEKLLERLRLKPYAD-----RFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI  180 (242)
T ss_pred             HHc---CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHH
Confidence            221   1233444567899999999965444     45678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|++++++|+|+|+++|++. .+...+|++++|++|++++.|++++
T Consensus       181 ~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~  227 (242)
T PRK11124        181 VSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASC  227 (242)
T ss_pred             HHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence            9999999878999999999974 6777899999999999999987644

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-35  Score=306.80  Aligned_cols=182  Identities=30%  Similarity=0.459  Sum_probs=155.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC--c-----cceEEEEccCCC-CCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--K-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~--~-----~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+++|+|..+++     +|+|.++|.++..  .     ++++||++|++. .+...||+||+.+..... 
T Consensus        38 ~G~nGaGKSTLl~~i~Gl~~p~-----~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-  111 (283)
T PRK13636         38 LGGNGAGKSTLFQNLNGILKPS-----SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL-  111 (283)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc-
Confidence            5999999999999999999887     8999999998731  1     245999999973 234579999998865432 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..+.++.+++++++++.+||.+..     ++.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus       112 --~~~~~~~~~~~~~~l~~~gL~~~~-----~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l  184 (283)
T PRK13636        112 --KLPEDEVRKRVDNALKRTGIEHLK-----DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLL  184 (283)
T ss_pred             --CCCHHHHHHHHHHHHHHCCChhhh-----hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence              234455567789999999996544     4567889999999999999999999999999999999999999999999


Q ss_pred             HHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++++ |+|||+++|++. .+...||++++|++|++++.|++++
T Consensus       185 ~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~  228 (283)
T PRK13636        185 VEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKE  228 (283)
T ss_pred             HHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999865 899999999964 6777899999999999999998765

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=2.1e-35  Score=295.98  Aligned_cols=175  Identities=34%  Similarity=0.453  Sum_probs=149.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||+++|+|+++++     +|+|.++|+++...         .++++|++|++.+++.+||.||+.+....+
T Consensus        42 ~G~nGsGKSTLl~~i~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~  116 (228)
T PRK10584         42 IGESGSGKSTLLAILAGLDDGS-----SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR  116 (228)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCC-----CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc
Confidence            5999999999999999999887     89999999886432         135999999999999999999998865432


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                         .....+.+++++++++.+||.+..+     +.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus       117 ---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  188 (228)
T PRK10584        117 ---GESSRQSRNGAKALLEQLGLGKRLD-----HLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL  188 (228)
T ss_pred             ---CCCHHHHHHHHHHHHHHcCCHhHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence               1233445667899999999965443     35678999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeee
Q 007344          152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVY  190 (607)
Q Consensus       152 L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~  190 (607)
                      |++++++ |.|||+++|++. .+ ..+|++++|++|++++
T Consensus       189 l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~  226 (228)
T PRK10584        189 LFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE  226 (228)
T ss_pred             HHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence            9999754 899999999975 45 4599999999999874

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-35  Score=308.37  Aligned_cols=181  Identities=25%  Similarity=0.440  Sum_probs=155.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---------ccceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQED--LFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~   69 (607)
                      +||||||||||+|+|+|+++++     +|+|.++|.++..         .++++|||+|++  .+++ .||.||+.+...
T Consensus        39 ~G~nGsGKSTLl~~L~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~  112 (286)
T PRK13646         39 VGQTGSGKSTLIQNINALLKPT-----TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPK  112 (286)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHH
Confidence            5999999999999999999887     8999999988742         124699999986  4665 499999998754


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      ..   ..+.++..++++++++.+||. +..     ++.++.|||||||||+||++|+.+|++++|||||+|||+.++..+
T Consensus       113 ~~---~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l  184 (286)
T PRK13646        113 NF---KMNLDEVKNYAHRLLMDLGFSRDVM-----SQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQV  184 (286)
T ss_pred             Hc---CCCHHHHHHHHHHHHHHcCCChhhh-----hCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence            32   234556667899999999995 333     346788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++++ .|+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       185 ~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~  232 (286)
T PRK13646        185 MRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKE  232 (286)
T ss_pred             HHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence            999999985 5899999999964 6778899999999999999998755

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1.8e-35  Score=295.55  Aligned_cols=178  Identities=33%  Similarity=0.511  Sum_probs=154.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +|||||||||||++|+|.+++.     +|+|.++|.++... .+.++|++|++.+++.+|++||+.+....+.   ..  
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~--  101 (223)
T TIGR03740        32 LGPNGAGKSTLLKMITGILRPT-----SGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLG---LP--  101 (223)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC--
Confidence            5999999999999999999887     89999999876533 2469999999999999999999988765431   11  


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                        ++++.++++.+||.+..|     ..++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       102 --~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~  174 (223)
T TIGR03740       102 --DSRIDEVLNIVDLTNTGK-----KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQG  174 (223)
T ss_pred             --HHHHHHHHHHcCCcHHHh-----hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCC
Confidence              235788999999965544     4567899999999999999999999999999999999999999999999998789


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +|||+++|++. .+...+|++++|++|++++.|++.+
T Consensus       175 ~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       175 ITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             CEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence            99999999974 6778899999999999999987653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-35  Score=305.59  Aligned_cols=181  Identities=29%  Similarity=0.440  Sum_probs=155.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCC-CCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQED-LFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+|+|+|+.+++     +|+|.++|+++...     .+++||++|++ .++...||.||+.+.....   
T Consensus        39 ~G~nGaGKSTLl~~i~G~~~p~-----~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---  110 (279)
T PRK13635         39 VGHNGSGKSTLAKLLNGLLLPE-----AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---  110 (279)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCC-----CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---
Confidence            6999999999999999999987     89999999987542     24599999997 3666789999998875432   


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ....++.+++++++++.+||.+..+     +.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++
T Consensus       111 ~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  185 (279)
T PRK13635        111 GVPREEMVERVDQALRQVGMEDFLN-----REPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ  185 (279)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            2344555677899999999965544     45678999999999999999999999999999999999999999999999


Q ss_pred             HHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ |+|||+++|++. .+. .||++++|++|++++.|++++
T Consensus       186 l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~  226 (279)
T PRK13635        186 LKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEE  226 (279)
T ss_pred             HHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHH
Confidence            9875 899999999975 455 599999999999999998655

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-35  Score=310.73  Aligned_cols=184  Identities=27%  Similarity=0.344  Sum_probs=158.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~   70 (607)
                      +|+||||||||+++|+|++++.     +|+|.++|+++...        +++++||+|++  .+.+.+||.+++......
T Consensus        47 vG~sGsGKSTLl~~l~gl~~p~-----~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~  121 (327)
T PRK11308         47 VGESGCGKSTLARLLTMIETPT-----GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLI  121 (327)
T ss_pred             ECCCCCcHHHHHHHHHcCCCCC-----CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHH
Confidence            6999999999999999999876     89999999987532        24599999997  688999999999876554


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      ..  ...+.+.++++.++++.+||.+    ...+.++++|||||||||+||+||+.+|++|++||||+|||..++.++++
T Consensus       122 ~~--~~~~~~~~~~~~~~l~~~gL~~----~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~  195 (327)
T PRK11308        122 NT--SLSAAERREKALAMMAKVGLRP----EHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN  195 (327)
T ss_pred             cc--CCCHHHHHHHHHHHHHHCCCCh----HHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHH
Confidence            21  2345566778999999999952    22355788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +|+++.+ .|.|+|++||+. ..+..++|++++|++|++++.|++++
T Consensus       196 lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~ive~g~~~~  241 (327)
T PRK11308        196 LMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRCVEKGTKEQ  241 (327)
T ss_pred             HHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence            9999986 499999999996 46778899999999999999998665

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.5e-36  Score=300.27  Aligned_cols=180  Identities=25%  Similarity=0.392  Sum_probs=152.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +|||||||||||++|+|..+++     +|+|.++|.++...      ++.++|++|+..+++.+||.||+.+.....   
T Consensus        37 ~G~nGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---  108 (237)
T PRK11614         37 IGANGAGKTTLLGTLCGDPRAT-----SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA---  108 (237)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCC-----CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc---
Confidence            5999999999999999999887     89999999986542      235999999999999999999998864321   


Q ss_pred             CCCHHHHHHHHHHHHHHc-CCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKL-GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                        ..++.++.++++++.+ ++.+..+     ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       109 --~~~~~~~~~~~~l~~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~  181 (237)
T PRK11614        109 --ERDQFQERIKWVYELFPRLHERRI-----QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIE  181 (237)
T ss_pred             --ChhHHHHHHHHHHHHHHHHHHHHh-----CchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence              1223344567777877 4654333     3567899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++|+|||+++|++. ++.+.||++++|++|++++.|++++
T Consensus       182 ~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  223 (237)
T PRK11614        182 QLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDA  223 (237)
T ss_pred             HHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHH
Confidence            99888999999999964 6788999999999999999998755

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=2.3e-35  Score=311.25  Aligned_cols=189  Identities=27%  Similarity=0.333  Sum_probs=160.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQED--LFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~   69 (607)
                      +|+||||||||+++|+|+++++.  ..+|+|.++|+++...         .++++||+|++  .+.+.+|+.+++.....
T Consensus        48 vG~sGsGKSTL~~~l~Gl~~p~~--~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~  125 (330)
T PRK09473         48 VGESGSGKSQTAFALMGLLAANG--RIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLM  125 (330)
T ss_pred             ECCCCchHHHHHHHHHcCCCCCC--CCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHH
Confidence            69999999999999999998741  2389999999987532         13599999998  68899999999987654


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ...  ..+.++..+++.++++.+||.+..+  ..+.++++|||||||||+||+||+.+|++|++||||+|||+.++..++
T Consensus       126 ~~~--~~~~~~~~~~~~~~L~~vgL~~~~~--~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~  201 (330)
T PRK09473        126 LHK--GMSKAEAFEESVRMLDAVKMPEARK--RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIM  201 (330)
T ss_pred             Hhc--CCCHHHHHHHHHHHHHHcCCCChHH--HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH
Confidence            432  2345666678899999999964322  234678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++|++++++ |.|+|++|||.. .+..++|++++|++|++++.|++++
T Consensus       202 ~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~  248 (330)
T PRK09473        202 TLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARD  248 (330)
T ss_pred             HHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence            999999864 899999999964 6778899999999999999998765

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-35  Score=304.77  Aligned_cols=182  Identities=27%  Similarity=0.411  Sum_probs=153.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQED--LFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~   69 (607)
                      +|||||||||||++|+|+++++     +|+|.++|.++...         ++.++|++|++  .+++ .||+||+.+...
T Consensus        39 ~G~nGsGKSTLl~~i~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~  112 (280)
T PRK13649         39 IGHTGSGKSTIMQLLNGLHVPT-----QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQ  112 (280)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHH
Confidence            5999999999999999999887     89999999876431         24599999996  4555 699999988654


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ..   ..+.++.+++++++++.+||.+    ...++.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.
T Consensus       113 ~~---~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~  185 (280)
T PRK13649        113 NF---GVSQEEAEALAREKLALVGISE----SLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELM  185 (280)
T ss_pred             Hc---CCCHHHHHHHHHHHHHHcCCCh----hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence            32   1234455567889999999952    1224467789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.|++++++|+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       186 ~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  231 (280)
T PRK13649        186 TLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKD  231 (280)
T ss_pred             HHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999999877999999999964 6778899999999999999987654

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=1.6e-35  Score=297.48  Aligned_cols=189  Identities=25%  Similarity=0.321  Sum_probs=154.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDL--FFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|+.++.. ...+|+|.++|+++...   .+.++|++|++.  +.+.+|+.|++.+......   
T Consensus        18 ~G~nGsGKSTLl~~l~Gl~~p~~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~---   93 (230)
T TIGR02770        18 VGESGSGKSLTCLAILGLLPPGL-TQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLG---   93 (230)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcc-CccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcC---
Confidence            59999999999999999998710 00189999999887542   246999999984  5677899999987654321   


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      ....+.+++++++++.+||.+.  +...++.++.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++
T Consensus        94 ~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~  171 (230)
T TIGR02770        94 KLSKQARALILEALEAVGLPDP--EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL  171 (230)
T ss_pred             ccHHHHHHHHHHHHHHcCCCch--HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence            1123445678999999999632  12234567889999999999999999999999999999999999999999999999


Q ss_pred             Hhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          156 AQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       156 a~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++ |+|||+++|++. ++...+|++++|++|+++..|++++
T Consensus       172 ~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  212 (230)
T TIGR02770       172 RQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKE  212 (230)
T ss_pred             HHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            864 899999999965 7778899999999999999887654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1.7e-35  Score=295.94  Aligned_cols=184  Identities=29%  Similarity=0.440  Sum_probs=152.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCC--CCCCHHHHHHHHHHccCC-CCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFF--SQLTVRETLSLAAELQLP-EILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~--~~lTV~E~l~~~~~~~~~-~~~~   77 (607)
                      +||||||||||+++|+|..+++     +|+|.+||++.....++++|++|++.++  ..+|+.||+.+....... ....
T Consensus        12 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~   86 (223)
T TIGR03771        12 LGPNGAGKTTLLRAILGLIPPA-----KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRP   86 (223)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccCC
Confidence            5999999999999999999887     8999999987654445699999998764  347999999875321100 0011


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      ..+.++++.++++.+|+.+..     +..+++||||||||++||++|+.+|+++++||||+|||+.++..+.+.|+++++
T Consensus        87 ~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~  161 (223)
T TIGR03771        87 CVADFAAVRDALRRVGLTELA-----DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG  161 (223)
T ss_pred             cHHHHHHHHHHHHHhCCchhh-----cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            223345688999999996544     345678999999999999999999999999999999999999999999999987


Q ss_pred             cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +|+|+|+++|++. .+...+|+++++ +|++++.|+.++
T Consensus       162 ~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~  198 (223)
T TIGR03771       162 AGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQ  198 (223)
T ss_pred             cCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHH
Confidence            8999999999964 688889999999 899999998765

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-35  Score=300.99  Aligned_cols=209  Identities=26%  Similarity=0.386  Sum_probs=172.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQED--LFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~   69 (607)
                      +|.|||||||+.++|.|++++......+|+|.++|+++-..         .++|+|++|++  .|.|.+||.+.+.-..+
T Consensus        37 VGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~  116 (316)
T COG0444          37 VGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLR  116 (316)
T ss_pred             EcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHH
Confidence            69999999999999999998432345689999999965321         23599999996  68999999999887776


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      .+... .++++.++++.++|+.+||.+-.  .+.+.++++|||||||||.||.||+.+|++||.||||++||...+.+|+
T Consensus       117 ~h~~~-~~~~ea~~~a~~~L~~Vgi~~~~--~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl  193 (316)
T COG0444         117 LHGKG-LSKKEAKERAIELLELVGIPDPE--RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQIL  193 (316)
T ss_pred             Hhhcc-hhhHHHHHHHHHHHHHcCCCCHH--HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHH
Confidence            54211 14567788899999999996432  2556789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhhcCCCCCCCCCHHHHHHHh
Q 007344          150 EALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADL  222 (607)
Q Consensus       150 ~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~~  222 (607)
                      ++|+++.+ .|.++|++|||. ..+.++||||.+|..|++|+.|++++    .     |..|.|..+...+..+
T Consensus       194 ~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~g~~~~----i-----~~~P~HPYT~~Ll~s~  257 (316)
T COG0444         194 DLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEGPVEE----I-----FKNPKHPYTRGLLNSL  257 (316)
T ss_pred             HHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEeCCHHH----H-----hcCCCChHHHHHHHhC
Confidence            99999985 799999999996 57899999999999999999999876    2     3446665555554443

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=2.4e-35  Score=298.09  Aligned_cols=185  Identities=25%  Similarity=0.310  Sum_probs=152.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc--CCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~--~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||||+|+|+.  +++     +|+|.++|+++...      +..++|++|++.+++.+|++|++.+......
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~  106 (243)
T TIGR01978        32 MGPNGSGKSTLSKTIAGHPSYEVT-----SGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARR  106 (243)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCC-----cceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhh
Confidence            5999999999999999995  454     89999999876432      1238999999999999999999988654321


Q ss_pred             C--C--CCCHHHHHHHHHHHHHHcCCCc-cccccccCCcCC-CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 007344           73 P--E--ILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVR-GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE  146 (607)
Q Consensus        73 ~--~--~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~-~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~  146 (607)
                      .  .  ..+..+..++++++++.+||.+ ..+     +.+. +|||||||||+||++|+.+|++++|||||+|||+.++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~  181 (243)
T TIGR01978       107 SARGEEPLDLLDFLKLLKAKLALLGMDEEFLN-----RSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALK  181 (243)
T ss_pred             cccccccccHHHHHHHHHHHHHHcCCchhhcc-----cccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence            1  0  1123344567889999999962 333     3444 59999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCChhHHHhh-hcceeeecCCeeeeeCCCCC
Q 007344          147 KVMEALRQLAQDGHTVICSIHQPRGSVYFK-FDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       147 ~i~~~L~~la~~g~tvi~~~H~p~~~i~~~-~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.+.|++++++|+|||+++|++. .+... +|++++|++|++++.|++++
T Consensus       182 ~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~  231 (243)
T TIGR01978       182 IVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVEL  231 (243)
T ss_pred             HHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHH
Confidence            999999999888999999999974 56666 79999999999999998653

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-35  Score=303.68  Aligned_cols=182  Identities=24%  Similarity=0.363  Sum_probs=153.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC--c-----cceEEEEccCCCC-CCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--K-----AYKFAYVRQEDLF-FSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~--~-----~~~i~yv~Q~~~l-~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||||+|+|.++++     +|+|.++|+++..  .     ++.++||+|++.. +...|+.||+.+..... 
T Consensus        33 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~-  106 (271)
T PRK13638         33 VGANGCGKSTLFMNLSGLLRPQ-----KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL-  106 (271)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCC-----ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc-
Confidence            6999999999999999999887     8999999998631  1     2359999999752 34468999998865432 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ....++..++++++++.+||.+..+     +.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus       107 --~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l  179 (271)
T PRK13638        107 --GVPEAEITRRVDEALTLVDAQHFRH-----QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII  179 (271)
T ss_pred             --CCCHHHHHHHHHHHHHHcCCHhHhc-----CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence              1234445567889999999965544     456789999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++++|+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       180 ~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  222 (271)
T PRK13638        180 RRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGE  222 (271)
T ss_pred             HHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999877999999999964 6778899999999999999998654

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-35  Score=298.93  Aligned_cols=192  Identities=31%  Similarity=0.391  Sum_probs=156.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|+.++......+|+|.++|.++...     ++.+||++|++.+++.+||.||+.+....+.. .
T Consensus        35 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~  113 (250)
T PRK14247         35 MGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-V  113 (250)
T ss_pred             ECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-c
Confidence            59999999999999999987421001389999999986432     24699999999888999999999987543211 1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      .+..+.++.+.++++.+||.+..+. ..+..+++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus       114 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~  192 (250)
T PRK14247        114 KSKKELQERVRWALEKAQLWDEVKD-RLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL  192 (250)
T ss_pred             CCHHHHHHHHHHHHHHcCCCcchhh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            1334455678899999998542111 224567899999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       156 a~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++ |+|+|+++|++. .+...+|++++|++|++++.|++++
T Consensus       193 ~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  231 (250)
T PRK14247        193 KK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTRE  231 (250)
T ss_pred             hc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHH
Confidence            65 899999999974 6778899999999999999987654

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-35  Score=302.20  Aligned_cols=181  Identities=24%  Similarity=0.364  Sum_probs=154.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+++|+|+.++.     +|+|.++|.++...     ++.++|++|++. +++..|+.+|+.+.....   
T Consensus        41 ~G~nGsGKSTLl~~i~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---  112 (269)
T PRK13648         41 VGHNGSGKSTIAKLMIGIEKVK-----SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---  112 (269)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---
Confidence            5999999999999999999887     89999999987532     245999999974 677789999998875432   


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ....++..++++++++.+|+.+..|     ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus       113 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  187 (269)
T PRK13648        113 AVPYDEMHRRVSEALKQVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRK  187 (269)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            1234455567889999999965444     45678999999999999999999999999999999999999999999999


Q ss_pred             HHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ |+|||+++|++. .+.. +|++++|++|++++.|++++
T Consensus       188 ~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~  228 (269)
T PRK13648        188 VKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTE  228 (269)
T ss_pred             HHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHH
Confidence            9864 899999999975 4555 99999999999999998765

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.8e-35  Score=299.63  Aligned_cols=183  Identities=28%  Similarity=0.378  Sum_probs=155.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------------------cceEEEEccCCCCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------------------AYKFAYVRQEDLFFSQLTVRE   62 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------------------~~~i~yv~Q~~~l~~~lTV~E   62 (607)
                      +||||||||||+|+|+|+.+++     +|+|.++|.++...                  ++.++|++|++.+++..||.|
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~  106 (252)
T TIGR03005        32 IGPSGSGKSTILRILMTLEPID-----EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLD  106 (252)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHH
Confidence            5999999999999999999887     89999999876321                  245999999999999999999


Q ss_pred             HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 007344           63 TLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDA  142 (607)
Q Consensus        63 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~  142 (607)
                      |+.++....  ......+.++.+.++++.+|+.+..+     +.++.||||||||++||++|+.+|++++|||||+|||+
T Consensus       107 nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~  179 (252)
T TIGR03005       107 NVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKAD-----HMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP  179 (252)
T ss_pred             HHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhh-----cChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            998864321  11234455567889999999965443     45678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          143 FQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       143 ~~~~~i~~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .++..+.+.|++++++ |+|+|+++|++. .+...+|++++|++|++++.|+.++
T Consensus       180 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  233 (252)
T TIGR03005       180 ELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDE  233 (252)
T ss_pred             HHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence            9999999999999864 899999999964 6778899999999999999887644

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=2.6e-35  Score=302.15  Aligned_cols=183  Identities=26%  Similarity=0.363  Sum_probs=154.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~   70 (607)
                      +|||||||||||++|+|+++++     +|+|.++|.++...        ++.++|++|++  .+++.+||+||+.+....
T Consensus        43 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~  117 (265)
T TIGR02769        43 LGRSGCGKSTLARLLLGLEKPA-----QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH  117 (265)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH
Confidence            5999999999999999999887     89999999886532        23599999996  467789999999876432


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           71 QLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      .  ......+.++++.++++.+||. +..     +..+++|||||||||+||++|+.+|++|+|||||+|||+.++..+.
T Consensus       118 ~--~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~  190 (265)
T TIGR02769       118 L--TSLDESEQKARIAELLDMVGLRSEDA-----DKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVIL  190 (265)
T ss_pred             h--cCCCHHHHHHHHHHHHHHcCCChhhh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            1  1123334556788999999995 333     3456789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.|++++++ |+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       191 ~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  237 (265)
T TIGR02769       191 ELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVEECDVAQ  237 (265)
T ss_pred             HHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEEECCHHH
Confidence            999999865 899999999964 6777899999999999999998755

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.4e-35  Score=276.68  Aligned_cols=181  Identities=29%  Similarity=0.474  Sum_probs=163.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||||+++|..+|.     .|+|.+||++++-....-|.|+|++.++|-+||.||+.|+.+++   ..++.+
T Consensus        37 lGpSGcGKTTLLnl~AGf~~P~-----~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~  108 (259)
T COG4525          37 LGPSGCGKTTLLNLIAGFVTPS-----RGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQ  108 (259)
T ss_pred             EcCCCccHHHHHHHHhcCcCcc-----cceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHH
Confidence            5999999999999999999997     89999999999776666799999999999999999999999886   467889


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g  159 (607)
                      +.+++.+.+..+||.+..     ++++-+|||||||||.|||||+.+|++|+||||+..||.-+++.+-++|-++. +.|
T Consensus       109 R~~~a~q~l~~VgL~~~~-----~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg  183 (259)
T COG4525         109 RREIAHQMLALVGLEGAE-----HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG  183 (259)
T ss_pred             HHHHHHHHHHHhCccccc-----ccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999996544     45778999999999999999999999999999999999999999999999986 679


Q ss_pred             CeEEEEecCChhHHHhhhcceeeec--CCeeeeeCCCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLT--EGKLVYAGPAR  195 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~--~G~iv~~G~~~  195 (607)
                      +.++++||+.. +..-+++++++|+  .||++..-+++
T Consensus       184 k~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d  220 (259)
T COG4525         184 KQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD  220 (259)
T ss_pred             CeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence            99999999965 5556789999997  58998766654

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-35  Score=300.80  Aligned_cols=182  Identities=35%  Similarity=0.496  Sum_probs=154.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|||||||||||++|+|+.++.     +|+|.++|.++...     .+.++|++|++.+++.+||+||+.+.....   .
T Consensus        34 ~G~nGsGKSTLl~~i~G~~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~  105 (258)
T PRK13548         34 LGPNGAGKSTLLRALSGELSPD-----SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---G  105 (258)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---C
Confidence            5999999999999999999886     89999999876432     245999999998888899999998864321   1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI------ASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~------~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ...++.+++++++++.+||.+..+     ..++.|||||||||+||++|+      .+|++|+|||||+|||+.++..+.
T Consensus       106 ~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~  180 (258)
T PRK13548        106 LSRAEDDALVAAALAQVDLAHLAG-----RDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL  180 (258)
T ss_pred             CCcHHHHHHHHHHHHHcCCHhHhc-----CCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHH
Confidence            122334456889999999965444     456789999999999999999      599999999999999999999999


Q ss_pred             HHHHHHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.|++++ ++|+|||+++|++. .+...||++++|++|++++.|++++
T Consensus       181 ~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  227 (258)
T PRK13548        181 RLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAE  227 (258)
T ss_pred             HHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeCCHHH
Confidence            9999998 67999999999964 6778899999999999998887654

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-35  Score=288.86  Aligned_cols=181  Identities=28%  Similarity=0.443  Sum_probs=152.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +|+||+|||||||+|+|+.++.     +|+|.++|++++..      +..++||||...+|+.|||+|||..++..+.. 
T Consensus        35 lG~NGaGKTTlLkti~Gl~~~~-----~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-  108 (237)
T COG0410          35 LGRNGAGKTTLLKTIMGLVRPR-----SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-  108 (237)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc-
Confidence            6999999999999999999886     89999999998764      23499999999999999999999988765421 


Q ss_pred             CCCHHHHHHHHHHHHHHcC-CCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLG-LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                         ++..+..++++.+.+- |.+.+     +++...|||||||.++|||||+.+|++|+|||||.||-|.-.++|.+.++
T Consensus       109 ---~~~~~~~~e~v~~lFP~Lker~-----~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~  180 (237)
T COG0410         109 ---KEAQERDLEEVYELFPRLKERR-----NQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIK  180 (237)
T ss_pred             ---cccccccHHHHHHHChhHHHHh-----cCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHH
Confidence               1112222666776664 43333     34556799999999999999999999999999999999999999999999


Q ss_pred             HHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++ |.||+++.++. ....+++||.++|.+|++++.|+.++
T Consensus       181 ~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvle~Griv~~G~~~e  223 (237)
T COG0410         181 ELRKEGGMTILLVEQNA-RFALEIADRGYVLENGRIVLSGTAAE  223 (237)
T ss_pred             HHHHcCCcEEEEEeccH-HHHHHhhCEEEEEeCCEEEEecCHHH
Confidence            99965 77999998884 57788999999999999999999776

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=3.2e-35  Score=295.05  Aligned_cols=179  Identities=25%  Similarity=0.372  Sum_probs=151.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+++|+|.+++.     +|+|.++|.++...      .+.++|++|++.+++.+|++||+.+....+.  
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--  104 (230)
T TIGR03410        32 LGRNGVGKTTLLKTLMGLLPVK-----SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP--  104 (230)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC--
Confidence            5999999999999999999887     89999999886432      2359999999999999999999988754321  


Q ss_pred             CCCHHHHHHHHHHHHHHcC-CCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLG-LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ..   ..+.++++++.++ +.+.     .++.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       105 -~~---~~~~~~~~l~~~~~l~~~-----~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~  175 (230)
T TIGR03410       105 -RR---SRKIPDEIYELFPVLKEM-----LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIR  175 (230)
T ss_pred             -cc---hHHHHHHHHHHHHhHHHH-----hhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence             11   1234566777776 4332     345677899999999999999999999999999999999999999999999


Q ss_pred             HHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++ |+|||+++|++. .+...+|++++|++|++++.|+.++
T Consensus       176 ~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~  218 (230)
T TIGR03410       176 RLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDE  218 (230)
T ss_pred             HHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence            99864 899999999964 6777899999999999999998765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-35  Score=303.43  Aligned_cols=181  Identities=28%  Similarity=0.380  Sum_probs=155.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCC-CCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||||+|+|+.+++     +|+|.++|.++...      .++++|++|++. .+...||.||+.+.....  
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--  106 (274)
T PRK13644         34 IGKNGSGKSTLALHLNGLLRPQ-----KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL--  106 (274)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc--
Confidence            5999999999999999999887     89999999987431      245999999975 356689999998875432  


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ..+..+.+++++++++.+||.+..+     ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       107 -~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~  180 (274)
T PRK13644        107 -CLPPIEIRKRVDRALAEIGLEKYRH-----RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK  180 (274)
T ss_pred             -CCCHHHHHHHHHHHHHHCCCHHHhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence             2345555677899999999965544     4567899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++|+|||+++|++. .+ ..+|++++|++|++++.|++++
T Consensus       181 ~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~  221 (274)
T PRK13644        181 KLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPEN  221 (274)
T ss_pred             HHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHH
Confidence            99888999999999975 45 4599999999999999998655

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-35  Score=300.68  Aligned_cols=185  Identities=30%  Similarity=0.413  Sum_probs=154.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCC-C
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-E   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~   74 (607)
                      +|+||||||||||+|+|+++++     +|+|.++|.++...     .+.++|++|+..+++.+||.||+.++...... .
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~  108 (255)
T PRK11231         34 IGPNGCGKSTLLKCFARLLTPQ-----SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLW  108 (255)
T ss_pred             ECCCCCCHHHHHHHHhCCcCCC-----CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhc
Confidence            5999999999999999998876     89999999876432     23599999999888889999999875321000 0


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ....++..++++++++.+||.+..+     ..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus       109 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  183 (255)
T PRK11231        109 GRLSAEDNARVNQAMEQTRINHLAD-----RRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE  183 (255)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            1111334456889999999965444     45678999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++|+|||+++|++. .+.+.+|++++|++|+++..|+.++
T Consensus       184 l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  224 (255)
T PRK11231        184 LNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEE  224 (255)
T ss_pred             HHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHH
Confidence            9878999999999964 7888999999999999999887654

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.6e-35  Score=302.26  Aligned_cols=182  Identities=32%  Similarity=0.432  Sum_probs=155.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +|+||||||||+|+|+|+.+++     +|+|.++|+++...     .++++||+|++. .+...||.||+.+.....   
T Consensus        36 ~G~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---  107 (277)
T PRK13652         36 IGPNGAGKSTLFRHFNGILKPT-----SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---  107 (277)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---
Confidence            5999999999999999999887     89999999986532     245999999973 333579999998765432   


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ..+.++.+++++++++.+||.+..+     +.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus       108 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~  182 (277)
T PRK13652        108 GLDEETVAHRVSSALHMLGLEELRD-----RVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLND  182 (277)
T ss_pred             CCCHHHHHHHHHHHHHHCCChhHhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            2344555667899999999965544     35678999999999999999999999999999999999999999999999


Q ss_pred             HHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ |+|||+++|++. ++.+.||++++|++|++++.|++++
T Consensus       183 l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~  224 (277)
T PRK13652        183 LPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEE  224 (277)
T ss_pred             HHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHH
Confidence            9865 899999999964 7778999999999999999998765

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.8e-35  Score=307.75  Aligned_cols=190  Identities=26%  Similarity=0.315  Sum_probs=158.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQED--LFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~   69 (607)
                      +|+||||||||+++|+|++++.+. ..+|+|.++|+++...         .+.++||+|++  .+.+.+||.+++.....
T Consensus        39 vG~sGsGKSTL~~~l~Gll~~~~~-~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~  117 (326)
T PRK11022         39 VGESGSGKSVSSLAIMGLIDYPGR-VMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIK  117 (326)
T ss_pred             ECCCCChHHHHHHHHHcCCCCCCC-CcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHH
Confidence            699999999999999999875311 1389999999987532         12599999997  58899999998876654


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ...  ....++.++++.++++.+||.+..  ...++++++|||||||||+||+||+.+|++|++||||+|||+.++.+++
T Consensus       118 ~~~--~~~~~~~~~~~~~~L~~~gL~~~~--~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il  193 (326)
T PRK11022        118 VHQ--GGNKKTRRQRAIDLLNQVGIPDPA--SRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQII  193 (326)
T ss_pred             Hhc--CCCHHHHHHHHHHHHHHCCCCChH--HHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Confidence            321  234556677899999999996421  1234578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++|+++++ .|.|+|++||+.. .+...+|+|++|++|++++.|++++
T Consensus       194 ~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~  240 (326)
T PRK11022        194 ELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHD  240 (326)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999985 5899999999964 6778899999999999999998765

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.4e-35  Score=301.41  Aligned_cols=182  Identities=31%  Similarity=0.465  Sum_probs=154.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCC-CCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDL-FFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+++|+|+.++.     +|+|.++|+++...       .++++|++|++. .+...||.||+.+..... 
T Consensus        34 ~G~nGsGKSTLl~~i~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~-  107 (275)
T PRK13639         34 LGPNGAGKSTLFLHFNGILKPT-----SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL-  107 (275)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc-
Confidence            5999999999999999999887     89999999987421       245999999963 233469999998764321 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ....++..+++.++++.+||.+..+     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus       108 --~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l  180 (275)
T PRK13639        108 --GLSKEEVEKRVKEALKAVGMEGFEN-----KPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL  180 (275)
T ss_pred             --CCCHHHHHHHHHHHHHHCCCchhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence              2334555667889999999975554     456789999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++++|.|||+++|++. .+...||++++|++|++++.|++++
T Consensus       181 ~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  223 (275)
T PRK13639        181 YDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKE  223 (275)
T ss_pred             HHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999877999999999964 6778899999999999999998765

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.2e-35  Score=299.94  Aligned_cols=185  Identities=32%  Similarity=0.467  Sum_probs=154.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCC-C
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-E   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~   74 (607)
                      +|||||||||||++|+|.++++     +|+|.++|.++...     .+.++|++|++.+++.+||+||+.+....... .
T Consensus        33 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  107 (256)
T TIGR03873        33 LGPNGSGKSTLLRLLAGALRPD-----AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW  107 (256)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCC-----CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhc
Confidence            5999999999999999999887     89999999886542     23599999998878889999999875321000 0


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      .....+..+++.++++.+|+.+..     ++.+..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|++
T Consensus       108 ~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (256)
T TIGR03873       108 AGDSPHDAAVVDRALARTELSHLA-----DRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRE  182 (256)
T ss_pred             cCCCHHHHHHHHHHHHHcCcHhhh-----cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            011223345788999999995444     445678999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++|.|||+++|++. .+...||++++|++|+++..|+.++
T Consensus       183 ~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  223 (256)
T TIGR03873       183 LAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPRE  223 (256)
T ss_pred             HHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHH
Confidence            9877999999999975 6778899999999999999887654

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-35  Score=297.84  Aligned_cols=192  Identities=29%  Similarity=0.386  Sum_probs=155.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC--Cc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~--~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+++|+|.++++.....+|+|.++|+++.  ..     +++++|++|++.+++.+||.||+.+....+. 
T Consensus        36 ~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-  114 (253)
T PRK14267         36 MGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-  114 (253)
T ss_pred             ECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-
Confidence            699999999999999999876310113799999999874  11     2459999999999999999999988754321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                      .....++..++++++++.+|+.+.... .-++.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~  193 (253)
T PRK14267        115 LVKSKKELDERVEWALKKAALWDEVKD-RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLF  193 (253)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCccchhh-hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence            111334455678899999998432111 1245678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ ++|||+++|++. .+...||++++|++|++++.|++++
T Consensus       194 ~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  234 (253)
T PRK14267        194 ELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRK  234 (253)
T ss_pred             HHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHH
Confidence            9975 699999999964 6778899999999999999987654

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-35  Score=298.92  Aligned_cols=189  Identities=21%  Similarity=0.324  Sum_probs=153.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|+|||||||||++|+|+.++......+|+|.++|.++...       ++.++|++|++.+++ +||+||+.+....+  
T Consensus        44 ~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~--  120 (258)
T PRK14268         44 IGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH--  120 (258)
T ss_pred             ECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc--
Confidence            59999999999999999987510001289999999876421       235999999998888 89999999875432  


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ..+.++.+++++++++.+|+.+.... ..++.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       121 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  198 (258)
T PRK14268        121 -GANKKDLDGVVENALRSAALWDETSD-RLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIM  198 (258)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCCcchhh-hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHH
Confidence             12344455678899999998432111 1245678899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ |+|||+++|++. .+...||++++|++|++++.|++++
T Consensus       199 ~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  239 (258)
T PRK14268        199 NLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFGQTRQ  239 (258)
T ss_pred             HHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9965 799999999964 6778899999999999999987654

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=8e-35  Score=293.56  Aligned_cols=178  Identities=29%  Similarity=0.477  Sum_probs=151.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEc-cCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVR-QEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~-Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|||||||||||++|+|+++|+     +|+|.++|.+....    .++++|++ |++.+++.+||+|++.+....+   .
T Consensus        53 ~G~NGsGKSTLl~~i~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~---~  124 (236)
T cd03267          53 IGPNGAGKTTTLKILSGLLQPT-----SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY---D  124 (236)
T ss_pred             ECCCCCCHHHHHHHHhCCcCCC-----ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc---C
Confidence            5999999999999999999887     89999999875321    24699997 5567888899999998876543   1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      ...++..++++++++.+||.+..|+     .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus       125 ~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  199 (236)
T cd03267         125 LPPARFKKRLDELSELLDLEELLDT-----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY  199 (236)
T ss_pred             CCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence            2344455678899999999766554     45689999999999999999999999999999999999999999999999


Q ss_pred             Hhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          156 AQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       156 a~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      +++ |+|||+++|++. .+...+|++++|++|++++.|
T Consensus       200 ~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         200 NRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             HhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence            764 889999999974 678889999999999998765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=6.9e-35  Score=293.21  Aligned_cols=182  Identities=31%  Similarity=0.446  Sum_probs=157.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||+++|+|..++.     +|+|.++|+++...   .+.++|++|++.+++.+|++||+.+....+.   .+
T Consensus        32 ~G~nGsGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~  103 (232)
T cd03300          32 LGPSGCGKTTLLRLIAGFETPT-----SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LP  103 (232)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CC
Confidence            5999999999999999999887     79999999987542   3469999999999999999999988765431   23


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      ....++.++++++.+||.+..+     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       104 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~  178 (232)
T cd03300         104 KAEIKERVAEALDLVQLEGYAN-----RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK  178 (232)
T ss_pred             HHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence            3445567889999999965544     35678999999999999999999999999999999999999999999999986


Q ss_pred             c-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      + |+|||+++|++ .++.+.+|++++|++|++++.|+.++
T Consensus       179 ~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~  217 (232)
T cd03300         179 ELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEE  217 (232)
T ss_pred             HcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHH
Confidence            4 89999999996 46788899999999999999886543

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-35  Score=302.34  Aligned_cols=184  Identities=27%  Similarity=0.421  Sum_probs=155.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+++|+|+++++.+  .+|+|.++|.++...     .+++||++|++. .++..||.||+.+....+   
T Consensus        39 ~G~nGaGKSTLl~~l~G~~~p~~g--~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---  113 (282)
T PRK13640         39 IGHNGSGKSTISKLINGLLLPDDN--PNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---  113 (282)
T ss_pred             ECCCCCcHHHHHHHHhcccCCCCC--CCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---
Confidence            599999999999999999987621  139999999987542     245999999974 567789999998765432   


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ..+.++.+++++++++.+||.+..     +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus       114 ~~~~~~~~~~~~~~l~~~~L~~~~-----~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~  188 (282)
T PRK13640        114 AVPRPEMIKIVRDVLADVGMLDYI-----DSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRK  188 (282)
T ss_pred             CCCHHHHHHHHHHHHHHCCChhHh-----cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            234566667899999999996544     346789999999999999999999999999999999999999999999999


Q ss_pred             HHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ |+|||+++|++. .+ ..||++++|++|++++.|++++
T Consensus       189 l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~  229 (282)
T PRK13640        189 LKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVE  229 (282)
T ss_pred             HHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHH
Confidence            9864 899999999975 45 4699999999999999998765

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.1e-35  Score=326.31  Aligned_cols=187  Identities=24%  Similarity=0.329  Sum_probs=158.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||||+|+|+.+++.   .+|+|.++|.++...      ++.+|||+|++.+++.+||+||+.+....+...
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  113 (506)
T PRK13549         37 CGENGAGKSTLMKVLSGVYPHGT---YEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGG  113 (506)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccC
Confidence            69999999999999999988620   289999999987532      235999999999999999999998875432111


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ..+.++..++++++++.+||.+..+     +.+++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++
T Consensus       114 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  188 (506)
T PRK13549        114 IMDYDAMYLRAQKLLAQLKLDINPA-----TPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD  188 (506)
T ss_pred             CcCHHHHHHHHHHHHHHcCCCCCcc-----cchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            1233445567899999999965544     45678999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++|+|||+++|++. .+...||++++|++|++++.|++++
T Consensus       189 l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~  229 (506)
T PRK13549        189 LKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAG  229 (506)
T ss_pred             HHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeeccccc
Confidence            9888999999999964 6778899999999999999998876

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=6.8e-35  Score=293.84  Aligned_cols=182  Identities=29%  Similarity=0.505  Sum_probs=157.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|.++...   +++++|++|++.+++.+|+.||+.+.....   ...
T Consensus        31 ~G~nG~GKStLl~~l~G~~~p~-----~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~  102 (235)
T cd03299          31 LGPTGSGKSVLLETIAGFIKPD-----SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVD  102 (235)
T ss_pred             ECCCCCCHHHHHHHHhCCcCCC-----ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCC
Confidence            5999999999999999999887     89999999887542   346999999999999999999998865432   123


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      ..+..+.+.++++.+||.+..+     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++.
T Consensus       103 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~  177 (235)
T cd03299         103 KKEIERKVLEIAEMLGIDHLLN-----RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK  177 (235)
T ss_pred             HHHHHHHHHHHHHHcCChhHHh-----cCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence            4455567889999999965544     35678999999999999999999999999999999999999999999999976


Q ss_pred             c-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      + |+|+|+++|++. .+...+|++++|++|++++.|+.++
T Consensus       178 ~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  216 (235)
T cd03299         178 EFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEE  216 (235)
T ss_pred             hcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence            4 999999999964 6788899999999999999887543

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.8e-35  Score=301.94  Aligned_cols=180  Identities=29%  Similarity=0.402  Sum_probs=153.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCC--CCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDL--FFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+++|+|+++++     +|+|.++|.++...      ++++||++|++.  ++ ..||.|++.|..... 
T Consensus        42 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~-  114 (280)
T PRK13633         42 LGRNGSGKSTIAKHMNALLIPS-----EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL-  114 (280)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEeccccccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc-
Confidence            6999999999999999999887     89999999887531      345999999974  44 469999999875432 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..+..+.+++++++++.+||.+..++     .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus       115 --~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l  187 (280)
T PRK13633        115 --GIPPEEIRERVDESLKKVGMYEYRRH-----APHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTI  187 (280)
T ss_pred             --CCCHHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence              23445566778999999999655544     56789999999999999999999999999999999999999999999


Q ss_pred             HHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++ .|.|||+++|++. .+.. +|++++|++|++++.|++++
T Consensus       188 ~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~  230 (280)
T PRK13633        188 KELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKE  230 (280)
T ss_pred             HHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHH
Confidence            99976 4999999999976 4554 99999999999999998765

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-35  Score=297.92  Aligned_cols=190  Identities=25%  Similarity=0.323  Sum_probs=153.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||||+|+|++++......+|+|.++|+++..       .++.++|++|++.+++ +||+||+.+....+. 
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~-  116 (254)
T PRK14273         39 IGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG-  116 (254)
T ss_pred             ECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC-
Confidence            5999999999999999998863111137999999987632       1245999999988885 899999998754321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       .....+.++++++.++.+++.+... ..-+..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+
T Consensus       117 -~~~~~~~~~~~~~~l~~~~l~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~  194 (254)
T PRK14273        117 -TKDKKKLDEIVEQSLKKSALWNEVK-DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELII  194 (254)
T ss_pred             -CCCHHHHHHHHHHHHHHhCCchhhH-HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHH
Confidence             1233445567888999998842111 11244678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ +.|||+++|++. .+...+|++++|++|+++..|++++
T Consensus       195 ~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  235 (254)
T PRK14273        195 NLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEESSTDE  235 (254)
T ss_pred             HHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9964 799999999975 6778899999999999999987654

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.1e-35  Score=294.10  Aligned_cols=182  Identities=31%  Similarity=0.470  Sum_probs=157.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||+++|+|.+++.     +|+|.++|.++...   .+.++|++|++.+++.+|+.||+.+....+.   ..
T Consensus        32 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~  103 (237)
T TIGR00968        32 LGPSGSGKSTLLRIIAGLEQPD-----SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HP  103 (237)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CC
Confidence            5999999999999999999876     89999999887532   2459999999999999999999988765431   23


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      .....+.++++++.+++.+..     ++.++.|||||+||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       104 ~~~~~~~~~~~l~~~~l~~~~-----~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~  178 (237)
T TIGR00968       104 KAKIKARVEELLELVQLEGLG-----DRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD  178 (237)
T ss_pred             HHHHHHHHHHHHHHcCCHhHh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence            334456788999999995444     445678999999999999999999999999999999999999999999999987


Q ss_pred             c-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      + |+|||++||++. .+.+.+|++++|++|++++.|+.++
T Consensus       179 ~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~  217 (237)
T TIGR00968       179 EVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDE  217 (237)
T ss_pred             hcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHH
Confidence            5 899999999964 6788899999999999999988654

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.3e-35  Score=300.83  Aligned_cols=181  Identities=26%  Similarity=0.438  Sum_probs=153.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|.++...     +++++|++|++. .++.+||+||+.+.....   
T Consensus        41 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---  112 (271)
T PRK13632         41 LGHNGSGKSTISKILTGLLKPQ-----SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---  112 (271)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---
Confidence            5999999999999999999887     89999999987532     345999999973 667789999998865432   


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ..+.++.+++++++++.+||.+..+     +.++.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++
T Consensus       113 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~  187 (271)
T PRK13632        113 KVPPKKMKDIIDDLAKKVGMEDYLD-----KEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVD  187 (271)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            1234455667899999999965544     45678999999999999999999999999999999999999999999999


Q ss_pred             HHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ ++|||+++|++. .+. .||++++|++|+++..|++++
T Consensus       188 ~~~~~~~tiii~sH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~  228 (271)
T PRK13632        188 LRKTRKKTLISITHDMD-EAI-LADKVIVFSEGKLIAQGKPKE  228 (271)
T ss_pred             HHHhcCcEEEEEEechh-HHh-hCCEEEEEECCEEEEecCHHH
Confidence            9876 589999999975 444 699999999999999987654

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-35  Score=300.49  Aligned_cols=185  Identities=26%  Similarity=0.392  Sum_probs=154.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCC-C
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-E   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~   74 (607)
                      +||||||||||||+|+|+.+++     +|+|.++|+++...     .++++|++|++.+++.+||+||+.+......+ .
T Consensus        39 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~  113 (265)
T PRK10253         39 IGPNGCGKSTLLRTLSRLMTPA-----HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLF  113 (265)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCC-----CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccc
Confidence            5999999999999999999886     89999999876432     24599999999999999999999875311100 0


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ....+..+++++++++.+||.+..     ++.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus       114 ~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~  188 (265)
T PRK10253        114 TRWRKEDEEAVTKAMQATGITHLA-----DQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE  188 (265)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHh-----cCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            001123345688999999996443     446788999999999999999999999999999999999999999999999


Q ss_pred             HHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++ .|.|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       189 l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  230 (265)
T PRK10253        189 LNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKE  230 (265)
T ss_pred             HHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            986 4899999999964 7889999999999999999987654

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=5.9e-35  Score=298.97  Aligned_cols=188  Identities=31%  Similarity=0.486  Sum_probs=154.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----------cceEEEEccCCCCCCCCCHHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----------AYKFAYVRQEDLFFSQLTVRETLSLAAEL   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~   70 (607)
                      +||||||||||+++|+|..+++.  ..+|+|.++|.++...          .++++|++|++.+++.+||.||+.+....
T Consensus        36 ~G~nGsGKSTLl~~i~G~~~p~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~  113 (262)
T PRK09984         36 LGPSGSGKSTLLRHLSGLITGDK--SAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALG  113 (262)
T ss_pred             ECCCCCCHHHHHHHHhccCCCCC--CCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcc
Confidence            59999999999999999998751  1269999999876421          23599999999999999999999876421


Q ss_pred             cCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 007344           71 QLPE-----ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQA  145 (607)
Q Consensus        71 ~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~  145 (607)
                      ..+.     ....++.+++++++++.+||.+..|     +.++.|||||||||+||++|+.+|++|+|||||+|||+.++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  188 (262)
T PRK09984        114 STPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-----QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA  188 (262)
T ss_pred             cccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-----CCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHH
Confidence            1000     0112334567899999999965444     45678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          146 EKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       146 ~~i~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ..+.+.|+++++ +|+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       189 ~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~  239 (262)
T PRK09984        189 RIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQGHVFYDGSSQQ  239 (262)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999999999985 4899999999964 6778899999999999999987654

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.9e-35  Score=296.02  Aligned_cols=190  Identities=25%  Similarity=0.343  Sum_probs=152.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||||+|+|+.+..+....+|+|.++|+++...       ++.++|++|++.+++ .||+||+.+....+. 
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~-  115 (253)
T PRK14242         38 IGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG-  115 (253)
T ss_pred             ECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC-
Confidence            59999999999999999864100001279999999886421       245999999998888 499999998754321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ....++.+++++++++.+|+.+...+ .-++.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus       116 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  193 (253)
T PRK14242        116 -VKDKAYLAERVERSLRHAALWDEVKD-RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIH  193 (253)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCchhhhH-HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence             11233445678889999998532111 1244678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ |+|||+++|++. .+...+|++++|++|+++..|++++
T Consensus       194 ~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~  234 (253)
T PRK14242        194 ELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEVGPTEQ  234 (253)
T ss_pred             HHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9954 799999999964 6778899999999999999887644

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-34  Score=306.59  Aligned_cols=192  Identities=19%  Similarity=0.229  Sum_probs=155.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCCC--CCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDL--FFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~   69 (607)
                      +|+||||||||+++|+|++++... ..+|+|.++|+++...         .+.++||+|++.  +.+.+||.+++.....
T Consensus        39 vG~sGsGKSTLl~~i~Gl~~~~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~  117 (330)
T PRK15093         39 VGESGSGKSLIAKAICGVTKDNWR-VTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIP  117 (330)
T ss_pred             ECCCCCCHHHHHHHHHccCCCCCC-CcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHH
Confidence            699999999999999999874211 1379999999987432         135999999975  6788999999976432


Q ss_pred             ccC--CCC-CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 007344           70 LQL--PEI-LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE  146 (607)
Q Consensus        70 ~~~--~~~-~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~  146 (607)
                      ...  ... ....+.++++.++++.+||.+..  ...++++++|||||||||+||+||+.+|++|++||||+|||+.++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~  195 (330)
T PRK15093        118 GWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQA  195 (330)
T ss_pred             hhhccccccccHHHHHHHHHHHHHHCCCCChH--HHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHH
Confidence            110  000 12234456789999999996422  1235578899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          147 KVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       147 ~i~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++|+++.+ .|.|+|++||+. ..+..++|++++|++|++++.|++++
T Consensus       196 ~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~ive~g~~~~  245 (330)
T PRK15093        196 QIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQTVETAPSKE  245 (330)
T ss_pred             HHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999986 489999999996 47778899999999999999998654

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.3e-35  Score=299.32  Aligned_cols=185  Identities=28%  Similarity=0.355  Sum_probs=153.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC-
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE-   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-   74 (607)
                      +||||||||||+|+|+|..+++     +|+|.++|.++...     .+.++|++|+..+++.+||.||+.+........ 
T Consensus        43 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~  117 (265)
T PRK10575         43 IGHNGSGKSTLLKMLGRHQPPS-----EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL  117 (265)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCC-----CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccc
Confidence            5999999999999999999887     89999999876432     235999999988888899999998753211000 


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      .....+.+++++++++.+||.+..+     ..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus       118 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  192 (265)
T PRK10575        118 GRFGAADREKVEEAISLVGLKPLAH-----RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR  192 (265)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            0111233456889999999965443     45678999999999999999999999999999999999999999999999


Q ss_pred             HHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ |.|||+++|++. .+...+|++++|++|++++.|+.++
T Consensus       193 l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~  234 (265)
T PRK10575        193 LSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAE  234 (265)
T ss_pred             HHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence            9864 899999999964 6778899999999999999887654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=9.5e-35  Score=323.76  Aligned_cols=185  Identities=25%  Similarity=0.371  Sum_probs=158.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC-
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-   73 (607)
                      +||||||||||||+|+|.++|+     +|+|.++|.++...      +++++||+|++.+++.+||+||+.+....+.. 
T Consensus        36 ~G~NGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  110 (501)
T PRK10762         36 VGENGAGKSTMMKVLTGIYTRD-----AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRF  110 (501)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccccc
Confidence            6999999999999999999887     89999999886432      23599999999999999999999886543210 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                      ...+..+.+++++++++.+||.+..|     +.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+
T Consensus       111 ~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~  185 (501)
T PRK10762        111 GRIDWKKMYAEADKLLARLNLRFSSD-----KLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIR  185 (501)
T ss_pred             CccCHHHHHHHHHHHHHHcCCCCCcc-----CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHH
Confidence            11233445567889999999976554     4567899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++|+|||+++|++ ..+...||++++|++|+++..|++++
T Consensus       186 ~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~  227 (501)
T PRK10762        186 ELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVAD  227 (501)
T ss_pred             HHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCc
Confidence            9988899999999996 46788999999999999999998876

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.5e-35  Score=270.59  Aligned_cols=175  Identities=35%  Similarity=0.485  Sum_probs=154.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +|||||||||||-+++|+..++     +|+|.+.|+++...         .+.+|||+|...+.|+||..||+...+.++
T Consensus        42 VG~SGSGKSTLl~vlAGLd~~s-----sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~  116 (228)
T COG4181          42 VGPSGSGKSTLLAVLAGLDDPS-----SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR  116 (228)
T ss_pred             EcCCCCcHHhHHHHHhcCCCCC-----CceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc
Confidence            6999999999999999999987     89999999987543         245999999999999999999999998887


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                      ..   +..+....+.++|+.+||.+..+     .++++|||||+|||+||||++..|+|||.||||-+||..+..+|.++
T Consensus       117 ge---~~~~~~~~A~~lL~~vGLg~Rl~-----HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDL  188 (228)
T COG4181         117 GE---SSADSRAGAKALLEAVGLGKRLT-----HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL  188 (228)
T ss_pred             CC---ccccHHHHHHHHHHHhCcccccc-----cCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHH
Confidence            42   23344566889999999965443     36889999999999999999999999999999999999999999999


Q ss_pred             HHHHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeee
Q 007344          152 LRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVY  190 (607)
Q Consensus       152 L~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~  190 (607)
                      |-.+. +.|.|.|++||||.  +..-|||.+-|.+|+++.
T Consensus       189 lF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~  226 (228)
T COG4181         189 LFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE  226 (228)
T ss_pred             HHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence            99986 57999999999984  567799999999999874

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=1.1e-34  Score=298.00  Aligned_cols=183  Identities=26%  Similarity=0.398  Sum_probs=154.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCC--CCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL--FFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|||||||||||++|+|+++|.     +|+|.++|.++...     .++++|++|++.  +++.+||.|++.+...... 
T Consensus        45 ~G~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~-  118 (267)
T PRK15112         45 IGENGSGKSTLAKMLAGMIEPT-----SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT-  118 (267)
T ss_pred             EcCCCCCHHHHHHHHhCCCCCC-----CCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc-
Confidence            5999999999999999999887     89999999887531     235999999974  6778899999988665431 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                       .....+..+.++++++.+||. +..     +..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus       119 -~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l  192 (267)
T PRK15112        119 -DLEPEQREKQIIETLRQVGLLPDHA-----SYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLM  192 (267)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCChHHH-----hcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence             123344556788999999994 333     3356789999999999999999999999999999999999999999999


Q ss_pred             HHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++++ |+|||+++|++. .+...||++++|++|++++.|++++
T Consensus       193 ~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  236 (267)
T PRK15112        193 LELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGSTAD  236 (267)
T ss_pred             HHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHH
Confidence            999864 899999999964 6778899999999999998886544

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-35  Score=274.39  Aligned_cols=183  Identities=31%  Similarity=0.415  Sum_probs=160.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------------------cceEEEEccCCCCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------------------AYKFAYVRQEDLFFSQLTVRE   62 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------------------~~~i~yv~Q~~~l~~~lTV~E   62 (607)
                      ||.|||||||+|+||.-+..|+     .|.|.+||+.+.-.                  +.+.|+|+|+..+++.+||.|
T Consensus        38 IGsSGSGKSTfLRCiN~LE~P~-----~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLe  112 (256)
T COG4598          38 IGSSGSGKSTFLRCINFLEKPS-----AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLE  112 (256)
T ss_pred             ecCCCCchhHHHHHHHhhcCCC-----CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHH
Confidence            6999999999999999999887     89999999865210                  124799999999999999999


Q ss_pred             HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 007344           63 TLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDA  142 (607)
Q Consensus        63 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~  142 (607)
                      |+.-+-.--+  ..++.+..++++..|..+|+.+.+|     .++..|||||+||++|||||+.+|+++++|||||.|||
T Consensus       113 NViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~-----~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDP  185 (256)
T COG4598         113 NVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKAD-----AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP  185 (256)
T ss_pred             HHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhh-----cCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCH
Confidence            9976533211  3567888889999999999976554     47889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          143 FQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       143 ~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ...-++++.+++||++|+|.+++||... ...+...+|++|++|.+-+.|+|++
T Consensus       186 ElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~fLh~G~iEE~G~P~q  238 (256)
T COG4598         186 ELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVIFLHQGKIEEEGPPEQ  238 (256)
T ss_pred             HHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheEEeecceecccCChHH
Confidence            9999999999999999999999999964 6677889999999999999999877

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-34  Score=297.99  Aligned_cols=181  Identities=23%  Similarity=0.369  Sum_probs=154.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +|+||||||||+++|+|+.++.     +|+|.++|+++...     .+.+||++|++. .++..||.||+.+.....   
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---  110 (277)
T PRK13642         39 IGQNGSGKSTTARLIDGLFEEF-----EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---  110 (277)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCC-----CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---
Confidence            5999999999999999999887     89999999987532     345999999974 566789999998765432   


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ....++..++++++++.+||.+..+     +.+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus       111 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~  185 (277)
T PRK13642        111 GIPREEMIKRVDEALLAVNMLDFKT-----REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHE  185 (277)
T ss_pred             CCCHHHHHHHHHHHHHHCCCHhHhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            1234455567899999999965544     45778999999999999999999999999999999999999999999999


Q ss_pred             HHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ |+|||+++|++. .+. .+|++++|++|+++..|++++
T Consensus       186 l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~  226 (277)
T PRK13642        186 IKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSE  226 (277)
T ss_pred             HHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHH
Confidence            9865 999999999975 454 599999999999999998655

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-34  Score=323.32  Aligned_cols=185  Identities=26%  Similarity=0.386  Sum_probs=157.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHcc--C
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ--L   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~--~   72 (607)
                      +||||||||||||+|+|+.+++     +|+|.++|+++...      +++++||+|++.+++.+||+||+.+.....  .
T Consensus        37 iG~nGsGKSTLl~~i~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  111 (510)
T PRK09700         37 LGENGAGKSTLMKVLSGIHEPT-----KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKV  111 (510)
T ss_pred             ECCCCCCHHHHHHHHcCCcCCC-----ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccccc
Confidence            6999999999999999999887     89999999887542      135999999999999999999998754211  0


Q ss_pred             -C-CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           73 -P-EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        73 -~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                       . ...+.++.+++++++++.+||.+..|     +.+++|||||||||+||++|+.+|++|||||||+|||+.++..+++
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~  186 (510)
T PRK09700        112 CGVNIIDWREMRVRAAMMLLRVGLKVDLD-----EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFL  186 (510)
T ss_pred             ccccccCHHHHHHHHHHHHHHcCCCCCcc-----cchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence             0 00123445567899999999965544     4567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .|++++++|+|||+++|++ ..+...||++++|++|++++.|++++
T Consensus       187 ~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~  231 (510)
T PRK09700        187 IMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVSD  231 (510)
T ss_pred             HHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchhh
Confidence            9999988899999999996 46778899999999999999998876

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.3e-35  Score=294.32  Aligned_cols=177  Identities=30%  Similarity=0.403  Sum_probs=150.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|..+++     +|+|.++|.++...     ++.++|++|++.+++ .||+||+.+....+   .
T Consensus        35 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~  105 (241)
T PRK14250         35 VGPSGAGKSTLIKLINRLIDPT-----EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G  105 (241)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C
Confidence            5999999999999999999887     89999999876431     245999999998887 59999998754321   1


Q ss_pred             CCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                          ..++++.++++.+||. +..     ++.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus       106 ----~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  176 (241)
T PRK14250        106 ----EKNVDVEYYLSIVGLNKEYA-----TRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK  176 (241)
T ss_pred             ----cHHHHHHHHHHHcCCCHHHh-----hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence                1134678899999995 233     346778999999999999999999999999999999999999999999999


Q ss_pred             HHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++ .|+|||+++|++. .+...+|++++|++|+++..|++.+
T Consensus       177 ~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  218 (241)
T PRK14250        177 LKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYD  218 (241)
T ss_pred             HHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence            986 4999999999964 6778899999999999999887654

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-34  Score=300.74  Aligned_cols=181  Identities=23%  Similarity=0.331  Sum_probs=151.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC----------ccceEEEEccCCC--CCCCCCHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN----------KAYKFAYVRQEDL--FFSQLTVRETLSLAA   68 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~----------~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~   68 (607)
                      +||||||||||+|+|+|++++.     +|+|.++|.++..          .++.++|++|++.  +++ .||+||+.+..
T Consensus        43 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~  116 (289)
T PRK13645         43 IGTTGSGKSTMIQLTNGLIISE-----TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGP  116 (289)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHH
Confidence            5999999999999999999886     8999999987631          1235999999973  444 59999998865


Q ss_pred             HccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344           69 ELQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~  147 (607)
                      ...   ....++..++++++++.++|. +..     ++.++.||||||||++||++|+.+|++|+|||||+|||+.++..
T Consensus       117 ~~~---~~~~~~~~~~~~~ll~~~~L~~~~~-----~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~  188 (289)
T PRK13645        117 VNL---GENKQEAYKKVPELLKLVQLPEDYV-----KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEED  188 (289)
T ss_pred             HHc---CCCHHHHHHHHHHHHHHcCCChhHh-----cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence            422   123444556788899999994 333     34567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          148 VMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       148 i~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.+.|+++++ .|+|||+++|++. .+...||++++|++|++++.|++++
T Consensus       189 l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  237 (289)
T PRK13645        189 FINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFE  237 (289)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9999999975 4899999999964 6788899999999999999987654

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-34  Score=293.50  Aligned_cols=191  Identities=22%  Similarity=0.356  Sum_probs=152.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+++|+|+.++.+....+|+|.++|+++..       .+++++|++|++.+++. ||.||+.+....+. 
T Consensus        37 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-  114 (251)
T PRK14244         37 IGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-  114 (251)
T ss_pred             ECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-
Confidence            5999999999999999997521000127999999987632       13459999999988886 99999988754321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                      ......+.++.+.++++.+||.+...+. -+..+++||||||||++||++|+++|++|+|||||+|||+.++..+.+.|+
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  193 (251)
T PRK14244        115 LAKNKKKLDEIVEKSLTSVGLWEELGDR-LKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ  193 (251)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCchhhhH-hhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            1112334456688899999996422111 134578899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ |+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       194 ~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  234 (251)
T PRK14244        194 ELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQE  234 (251)
T ss_pred             HHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHH
Confidence            9864 899999999964 6778899999999999999887644

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=1.8e-34  Score=284.53  Aligned_cols=168  Identities=35%  Similarity=0.500  Sum_probs=143.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---------ccceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||+++|+|+++++     +|+|.++|.++..         ..++++|++|++.+++.+|++||+.+.....
T Consensus        30 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~  104 (206)
T TIGR03608        30 IGESGSGKSTLLNIIGLLEKFD-----SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK  104 (206)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc
Confidence            5999999999999999999886     8999999998431         1246999999999999999999999875432


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                         .....+..++++++++.+||.+..+     +.+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus       105 ---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~  176 (206)
T TIGR03608       105 ---KLSKKEKREKKKEALEKVGLNLKLK-----QKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDL  176 (206)
T ss_pred             ---CCCHHHHHHHHHHHHHHcCchhhhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHH
Confidence               1234455667899999999965544     45678999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEEEecCChhHHHhhhcceeee
Q 007344          152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL  183 (607)
Q Consensus       152 L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL  183 (607)
                      |++++++|.|+|+++|++. . ...+|++++|
T Consensus       177 l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l  206 (206)
T TIGR03608       177 LLELNDEGKTIIIVTHDPE-V-AKQADRVIEL  206 (206)
T ss_pred             HHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence            9999877999999999975 3 4579999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-34  Score=296.23  Aligned_cols=191  Identities=27%  Similarity=0.361  Sum_probs=153.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|||||||||||++|+|+.++......+|+|.++|+++...       ++.++|++|++.+++. ||.||+.+....+..
T Consensus        51 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~  129 (267)
T PRK14235         51 IGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL  129 (267)
T ss_pred             ECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc
Confidence            59999999999999999987510001289999999887421       2459999999988875 999999987643311


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ..+..+.+++++++++.+||.+.... .-+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus       130 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~  207 (267)
T PRK14235        130 -ARSKAELDEIVETSLRKAGLWEEVKD-RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID  207 (267)
T ss_pred             -ccchHHHHHHHHHHHHHcCCchhhhH-HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence             11233445678899999999542111 1234678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ ++|||+++|++. .+...+|++++|++|+++..|++++
T Consensus       208 ~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~  248 (267)
T PRK14235        208 ELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGDTEK  248 (267)
T ss_pred             HHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCCHHH
Confidence            9976 689999999964 6778899999999999999987544

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-34  Score=292.44  Aligned_cols=189  Identities=26%  Similarity=0.388  Sum_probs=152.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|+.++.+  ..+|+|.++|+++...     ++.++|++|++.+++ .||+||+.+....+.. .
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~~~~--~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~  109 (246)
T PRK14269         34 IGASGCGKSTFLRCFNRMNDKIA--KIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-I  109 (246)
T ss_pred             ECCCCCCHHHHHHHHhcccCCCC--CCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-c
Confidence            59999999999999999975310  1289999999987542     245999999998887 6999999987543311 0


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      ....+.+++++++++.+||.+...+ .-++.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus       110 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~  188 (246)
T PRK14269        110 KNKDEEEALVVDCLQKVGLFEEVKD-KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL  188 (246)
T ss_pred             cChHHHHHHHHHHHHHcCCChhhhH-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            1223445568899999999432111 123467889999999999999999999999999999999999999999999998


Q ss_pred             HhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       156 a~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++ |+|+|+++|++ ..+...+|++++|++|++++.|++++
T Consensus       189 ~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~  227 (246)
T PRK14269        189 SH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKE  227 (246)
T ss_pred             hC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHH
Confidence            65 89999999996 46778899999999999999987654

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-34  Score=294.38  Aligned_cols=191  Identities=24%  Similarity=0.350  Sum_probs=154.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||||+|+|+.++.+....+|+|.++|.++..       .++.++|++|+..+++.+||+||+.+....+. 
T Consensus        36 ~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~-  114 (258)
T PRK14241         36 IGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG-  114 (258)
T ss_pred             ECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC-
Confidence            5999999999999999998642100128999999987632       12459999999999999999999988765321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ..+.++.+++++++++.+||.+.... .-+..+++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       115 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  192 (258)
T PRK14241        115 -VRNKKDLDELVEKSLRGANLWNEVKD-RLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLIN  192 (258)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCchhhhh-HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence             12334455678899999998421111 1234678899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeec------CCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLT------EGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~------~G~iv~~G~~~~  196 (607)
                      ++++ ++|||+++|++. .+...+|++++|+      +|++++.|++++
T Consensus       193 ~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~  239 (258)
T PRK14241        193 ELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEK  239 (258)
T ss_pred             HHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHH
Confidence            9964 689999999964 6778899999996      799999987654

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-34  Score=292.56  Aligned_cols=187  Identities=24%  Similarity=0.326  Sum_probs=152.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc---CCCCCCccceEEEECCeeCCCc-------cceEEEEccCCCCCCCCCHHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAGQL---MASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAEL   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~---~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~   70 (607)
                      +||||||||||+|+|+|+.   ++.   ..+|+|.++|.++...       ++.++|++|++.+++ .|+.||+.+....
T Consensus        35 ~G~nGsGKSTLl~~i~Gl~~~~~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~  110 (250)
T PRK14245         35 IGPSGCGKSTFLRLFNRMNDLIPAT---RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRV  110 (250)
T ss_pred             ECCCCCCHHHHHHHHhhhhcccCCC---CCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHH
Confidence            5999999999999999973   331   1279999999886431       235999999998887 5999999887544


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      +.  ....+..++.++++++.+||.+...+ ..+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+
T Consensus       111 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~  187 (250)
T PRK14245        111 NG--VKDNAFIRQRVEETLKGAALWDEVKD-KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE  187 (250)
T ss_pred             cC--CCcHHHHHHHHHHHHHHcCCCcchhh-hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence            31  11223345678899999998543211 1234678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .|++++ +|+|||+++|++. .+.+.||++++|++|++++.|++++
T Consensus       188 ~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~  231 (250)
T PRK14245        188 LIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKK  231 (250)
T ss_pred             HHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHH
Confidence            999995 4799999999964 6778899999999999999998665

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-34  Score=292.05  Aligned_cols=190  Identities=24%  Similarity=0.325  Sum_probs=154.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|||||||||||++|+|..++.+....+|+|.++|.++...       +++++|++|++.+++ .|++||+.+...... 
T Consensus        36 ~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~-  113 (251)
T PRK14270         36 IGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG-  113 (251)
T ss_pred             ECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC-
Confidence            59999999999999999986521111379999999987421       245999999998887 899999998754321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       .....+.+++++++++.+||.+... ..-+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       114 -~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~  191 (251)
T PRK14270        114 -IKDKKELDKIVEWALKKAALWDEVK-DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMV  191 (251)
T ss_pred             -CCcHHHHHHHHHHHHHHcCCchhhh-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence             1123445567888999998842110 11234678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ ++|||+++|++ ..+...||++++|++|++++.|++++
T Consensus       192 ~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~  232 (251)
T PRK14270        192 ELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTEK  232 (251)
T ss_pred             HHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHHH
Confidence            9976 58999999996 47788899999999999999998655

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-34  Score=291.90  Aligned_cols=191  Identities=24%  Similarity=0.343  Sum_probs=154.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+|+|+|++++.+....+|+|.++|.++..       .++.++|++|++.+++.+|+.||+.+...... 
T Consensus        36 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~-  114 (252)
T PRK14272         36 IGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG-  114 (252)
T ss_pred             ECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC-
Confidence            5999999999999999998764211237999999988642       12359999999999999999999987654321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ....++..+.++++++.+++.+.... ..+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus       115 -~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~  192 (252)
T PRK14272        115 -IRDRDHLMEVAERSLRGAALWDEVKD-RLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMT  192 (252)
T ss_pred             -CCCHHHHHHHHHHHHHHcCcchhhhh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence             11234445667778888876421111 1245678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ ++|+|+++|++. .+...||++++|++|++++.|++++
T Consensus       193 ~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  233 (252)
T PRK14272        193 DLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQ  233 (252)
T ss_pred             HHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9975 799999999964 6778899999999999999987654

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-34  Score=291.43  Aligned_cols=190  Identities=25%  Similarity=0.358  Sum_probs=153.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+++|+|+.++.+....+|+|.++|+++..       .+++++|++|++.+++ +||+||+.+....+. 
T Consensus        35 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~-  112 (250)
T PRK14240         35 IGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG-  112 (250)
T ss_pred             ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC-
Confidence            5999999999999999987532111137999999988642       1245999999998887 899999998754321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ..+.++.+++++++++.+++.+.... .-++.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus       113 -~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~  190 (250)
T PRK14240        113 -IKDKKKLDEIVEKSLKGAALWDEVKD-RLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQ  190 (250)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCchhhHH-HHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence             12234455678888999987421111 1244678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ ++|||+++|++ ..+...+|++++|++|+++..|++++
T Consensus       191 ~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~  231 (250)
T PRK14240        191 ELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVD  231 (250)
T ss_pred             HHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence            9964 78999999996 46788899999999999999887654

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-34  Score=291.89  Aligned_cols=191  Identities=24%  Similarity=0.352  Sum_probs=154.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+++|+|+.++.+....+|+|.++|+++..       .+++++|++|+..+++.+||+||+.+.....  
T Consensus        36 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--  113 (252)
T PRK14256         36 IGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--  113 (252)
T ss_pred             ECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--
Confidence            5999999999999999998521000127999999988642       1345999999999999999999998765432  


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                      ......+.+++++++++.+|+.+..... .+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus       114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~  192 (252)
T PRK14256        114 GRVNRSEADEIVESSLKRVALWDEVKDR-LKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE  192 (252)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCchhhhHH-hhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            1123344456788999999985321111 134678899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ ++|||+++|++. .+...||++++|++|+++..|++++
T Consensus       193 ~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  233 (252)
T PRK14256        193 ELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKK  233 (252)
T ss_pred             HHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHH
Confidence            9976 589999999964 6778899999999999999997654

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=2.9e-34  Score=291.56  Aligned_cols=180  Identities=31%  Similarity=0.405  Sum_probs=152.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|+.+ .     +|+|.++|+++...     .+.++|++|++.+++.+||+||+.+....    .
T Consensus        28 ~G~nGsGKSTLl~~l~Gl~~-~-----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~----~   97 (248)
T PRK03695         28 VGPNGAGKSTLLARMAGLLP-G-----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPD----K   97 (248)
T ss_pred             ECCCCCCHHHHHHHHcCCCC-C-----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCcc----C
Confidence            59999999999999999874 2     79999999987532     23489999998888889999999876321    1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhh-------CCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA-------SPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~-------~p~illLDEPtsGLD~~~~~~i  148 (607)
                      ...++..++++++++.+||.+..+     +.++.||||||||++||++|+.       +|++++|||||+|||+.++..+
T Consensus        98 ~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l  172 (248)
T PRK03695         98 TRTEAVASALNEVAEALGLDDKLG-----RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAAL  172 (248)
T ss_pred             CCcHHHHHHHHHHHHHcCCHhHhc-----CCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHH
Confidence            223344567889999999965443     4567899999999999999998       6799999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|++++++|+|||+++|++. ++...+|++++|++|++++.|+.++
T Consensus       173 ~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  219 (248)
T PRK03695        173 DRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDE  219 (248)
T ss_pred             HHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence            9999999878999999999964 6788999999999999999887544

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-34  Score=293.91  Aligned_cols=190  Identities=26%  Similarity=0.337  Sum_probs=153.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+|+|+|+.++.+....+|+|.++|.++..       .+++++|++|+..+++ .||+||+.+....+. 
T Consensus        45 ~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~-  122 (260)
T PRK10744         45 IGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE-  122 (260)
T ss_pred             ECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC-
Confidence            5999999999999999998621000127999999988642       1246999999998887 799999988754321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ..+.++.+++++++++.+++.+.... .-++.+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus       123 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~  200 (260)
T PRK10744        123 -KLSRAEMDERVEWALTKAALWNEVKD-KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELIT  200 (260)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCChhhHH-HHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence             13344555678999999998421111 1234678899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ +.|||+++|++. .+...+|++++|++|+++..|++++
T Consensus       201 ~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  241 (260)
T PRK10744        201 ELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEFGNTDT  241 (260)
T ss_pred             HHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9964 789999999964 6778899999999999999987654

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-34  Score=290.90  Aligned_cols=188  Identities=26%  Similarity=0.329  Sum_probs=152.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcC--CCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLM--ASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~--~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||+++|+|+.+  |+  ...+|+|.++|+++..       .++.++||+|++.+++ .||+||+.+....+
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~~~p~--~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~  113 (252)
T PRK14239         37 IGPSGSGKSTLLRSINRMNDLNPE--VTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK  113 (252)
T ss_pred             ECCCCCCHHHHHHHHhcccccCCC--CCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc
Confidence            59999999999999999854  31  0127999999988632       1245999999998887 79999998875432


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                      .  ....+..++++.++++.+++.+...+ ..++.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus       114 ~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~  190 (252)
T PRK14239        114 G--IKDKQVLDEAVEKSLKGASIWDEVKD-RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET  190 (252)
T ss_pred             C--CCcHHHHHHHHHHHHHHcCCchhHHH-HHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH
Confidence            1  11233345678889999987432111 12456789999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       152 L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |+++++ ++|||+++|++. .+...||++++|++|++++.|+.++
T Consensus       191 l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  233 (252)
T PRK14239        191 LLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQ  233 (252)
T ss_pred             HHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999975 689999999964 6788899999999999999987654

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-34  Score=294.01  Aligned_cols=190  Identities=24%  Similarity=0.356  Sum_probs=153.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+++|+|+.++.+....+|+|.++|+++..       .++.++|++|++.+++. ||+||+.+....+. 
T Consensus        44 ~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-  121 (259)
T PRK14274         44 IGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG-  121 (259)
T ss_pred             ECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC-
Confidence            6999999999999999998631111137999999998642       12459999999988886 99999988654321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ....++.+++++++++.+++.+.... .-+..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       122 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  199 (259)
T PRK14274        122 -TKNKKKLQEIVEKSLKDVALWDEVKD-RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL  199 (259)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCchhhhh-hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence             12334455678889999998532111 1245678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ ++|+|+++|++. .+...+|++++|++|+++..|++++
T Consensus       200 ~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  240 (259)
T PRK14274        200 KLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNK  240 (259)
T ss_pred             HHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence            9965 789999999964 6788899999999999999997654

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-34  Score=319.70  Aligned_cols=185  Identities=22%  Similarity=0.315  Sum_probs=157.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||||+|+|+.+++     +|+|.++|+++...      +++++||+|+..+++.+||+||+.+........
T Consensus        30 iG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~  104 (491)
T PRK10982         30 MGENGAGKSTLLKCLFGIYQKD-----SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGM  104 (491)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCC-----ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccccc
Confidence            6999999999999999999887     89999999987532      245999999998999999999998754211111


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ..+.++..++++++++.+|+.+..+     +.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus       105 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  179 (491)
T PRK10982        105 FVDQDKMYRDTKAIFDELDIDIDPR-----AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRK  179 (491)
T ss_pred             ccCHHHHHHHHHHHHHHcCCCCCcc-----CchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            1233444567899999999965444     45678999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++|+|||+++|++ ..+...||++++|++|+++..|++++
T Consensus       180 l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~  220 (491)
T PRK10982        180 LKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAG  220 (491)
T ss_pred             HHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhh
Confidence            988899999999996 46778899999999999999998766

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-34  Score=292.42  Aligned_cols=191  Identities=24%  Similarity=0.314  Sum_probs=157.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---c----cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---K----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|+|||||||||++|+|+.++++....+|+|.++|+++..   .    ++.++|++|+..+++ .|++||+.+...... 
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~-  116 (261)
T PRK14258         39 IGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG-  116 (261)
T ss_pred             ECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC-
Confidence            5999999999999999999876555568999999987631   1    235999999988888 899999988654321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ..+..+.++++.++++.+++.+..+. ..++.+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       117 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~  194 (261)
T PRK14258        117 -WRPKLEIDDIVESALKDADLWDEIKH-KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQ  194 (261)
T ss_pred             -CCcHHHHHHHHHHHHHHcCCcchhhh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence             11233445678899999998542221 2245678999999999999999999999999999999999999999999999


Q ss_pred             HHHh-cCCeEEEEecCChhHHHhhhcceeeecC-----CeeeeeCCCCC
Q 007344          154 QLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTE-----GKLVYAGPARD  196 (607)
Q Consensus       154 ~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~-----G~iv~~G~~~~  196 (607)
                      ++++ +|+|||+++|++ ..+.+.||++++|++     |++++.|++++
T Consensus       195 ~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~  242 (261)
T PRK14258        195 SLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEFGLTKK  242 (261)
T ss_pred             HHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEeCCHHH
Confidence            9975 589999999996 478889999999999     99999998765

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-34  Score=292.02  Aligned_cols=190  Identities=26%  Similarity=0.396  Sum_probs=154.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|||||||||||++|+|+.++.+....+|+|.++|.++..       .++.++|++|++.+++ .||+||+.+...... 
T Consensus        35 ~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~-  112 (250)
T PRK14262         35 IGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG-  112 (250)
T ss_pred             ECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC-
Confidence            5999999999999999998741100127999999987642       1245999999998888 899999998754321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ....+..++.+++.++.+|+.+..+ ...+..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       113 -~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~  190 (250)
T PRK14262        113 -VKSKHKLDRIVEESLKKAALWDEVK-SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLE  190 (250)
T ss_pred             -CCcHHHHHHHHHHHHHHcCCCchhH-HHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHH
Confidence             1223344566888999999853211 12355778999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ ++|+|+++|++. .+...+|++++|++|+++..|++++
T Consensus       191 ~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  231 (250)
T PRK14262        191 ELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGPTRE  231 (250)
T ss_pred             HHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence            9975 789999999964 6778899999999999999997654

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-34  Score=293.38  Aligned_cols=190  Identities=24%  Similarity=0.307  Sum_probs=155.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||||+|+|++++......+|+|.++|.++...       ++.++|++|++.+++ .||+||+.+.....  
T Consensus        52 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--  128 (267)
T PRK14237         52 IGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--  128 (267)
T ss_pred             ECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--
Confidence            59999999999999999986410001389999999887421       345999999988887 59999998875432  


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                      ....+++.++++.++++.++|.+..++ ..++.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus       129 ~~~~~~~~~~~~~~~l~~~~l~~~i~~-~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~  207 (267)
T PRK14237        129 GVKDKKVLDEIVETSLKQAALWDQVKD-DLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF  207 (267)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCchhhh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            112344556678899999998543222 2245678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ +.|||+++|++. .+...||++++|++|++++.|++++
T Consensus       208 ~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  248 (267)
T PRK14237        208 ELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRN  248 (267)
T ss_pred             HHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence            9964 789999999975 6788899999999999999998755

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=3.4e-34  Score=285.79  Aligned_cols=174  Identities=36%  Similarity=0.530  Sum_probs=149.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+++|+|.++++     +|+|.++|.++...        ++.++|++|++.+++.+|+.||+.+......
T Consensus        37 ~G~nGsGKStLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~  111 (220)
T TIGR02982        37 TGPSGSGKTTLLTLIGGLRSVQ-----EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP  111 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc
Confidence            5999999999999999999887     89999999986431        2459999999999999999999998765321


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ....++.+++++++++.+||.+..+     ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus       112 --~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l  184 (220)
T TIGR02982       112 --NLSYQEARERARAMLEAVGLGDHLD-----YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM  184 (220)
T ss_pred             --CCCHHHHHHHHHHHHHHcCChhhhh-----cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence              1334555677899999999965444     356789999999999999999999999999999999999999999999


Q ss_pred             HHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCee
Q 007344          153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       153 ~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i  188 (607)
                      +++++ .|+|||+++|++.  +...+|++++|++|++
T Consensus       185 ~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       185 QKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL  219 (220)
T ss_pred             HHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence            99986 5899999999974  4578999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-34  Score=290.96  Aligned_cols=190  Identities=24%  Similarity=0.291  Sum_probs=154.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+++|+|+.++..+...+|+|.++|.++..       .++.++|++|++.+++. ||+||+.+....+. 
T Consensus        36 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-  113 (251)
T PRK14249         36 IGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG-  113 (251)
T ss_pred             ECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC-
Confidence            5999999999999999998875211236999999987642       13459999999988885 99999998764321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ....++.++.++++++.+++.+... ...++.+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       114 -~~~~~~~~~~~~~~l~~~~l~~~l~-~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~  191 (251)
T PRK14249        114 -TTAQSRLDEVVEKSLRQAALWDEVK-DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ  191 (251)
T ss_pred             -CChhhHHHHHHHHHHHHhCCchhhh-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence             1112334456778888888753221 12345688999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++ +|+|||+++|++ ..+...||++++|++|++++.|++++
T Consensus       192 ~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~  232 (251)
T PRK14249        192 ELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGE  232 (251)
T ss_pred             HHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence            985 589999999996 46778899999999999999987654

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.8e-34  Score=318.94  Aligned_cols=188  Identities=23%  Similarity=0.343  Sum_probs=157.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||||+|+|+.+++.   .+|+|.++|+++...      +++++||+|++.+++.+||.||+.+........
T Consensus        33 iG~nGsGKSTLl~~i~G~~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~  109 (500)
T TIGR02633        33 CGENGAGKSTLMKILSGVYPHGT---WDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPG  109 (500)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccc
Confidence            69999999999999999987620   279999999987542      235999999999999999999998865432111


Q ss_pred             -CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           75 -ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        75 -~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ....++.+++++++++.+||.+..+    ++.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~l~~~~~----~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~  185 (500)
T TIGR02633       110 GRMAYNAMYLRAKNLLRELQLDADNV----TRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIR  185 (500)
T ss_pred             cccCHHHHHHHHHHHHHHcCCCCCcc----cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence             1233445567899999999964332    23567899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++|+|||+++|++ ..+...||++++|++|++++.|++++
T Consensus       186 ~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~  227 (500)
T TIGR02633       186 DLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMST  227 (500)
T ss_pred             HHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCccc
Confidence            9998899999999996 47788899999999999999998765

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=3.1e-34  Score=282.56  Aligned_cols=156  Identities=39%  Similarity=0.612  Sum_probs=135.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcC---CCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM---ASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~---~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+++|+|+.+   ++     +|+|.++|.++...    .+.++|++|++.+++.+||+||+.+.+...  
T Consensus        39 ~G~nGsGKSTLl~~l~G~~~~~~~~-----~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--  111 (202)
T cd03233          39 LGRPGSGCSTLLKALANRTEGNVSV-----EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--  111 (202)
T ss_pred             ECCCCCCHHHHHHHhcccCCCCCCc-----ceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--
Confidence            59999999999999999988   44     89999999986532    346999999999999999999998764310  


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                                                   .+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       112 -----------------------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~  162 (202)
T cd03233         112 -----------------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIR  162 (202)
T ss_pred             -----------------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence                                         233567899999999999999999999999999999999999999999999


Q ss_pred             HHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          154 QLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       154 ~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      +++++ +.|+|+++|+...++.+.+|++++|++|++++.|
T Consensus       163 ~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         163 TMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             HHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence            99865 6788888777666788899999999999998765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=4.4e-34  Score=291.84  Aligned_cols=183  Identities=23%  Similarity=0.360  Sum_probs=151.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCee-----CCCc---------cceEEEEccCC--CCCCCCCHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-----SSNK---------AYKFAYVRQED--LFFSQLTVRETL   64 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~-----~~~~---------~~~i~yv~Q~~--~l~~~lTV~E~l   64 (607)
                      +||||||||||+|+|+|.++++     +|+|.++|.+     +...         .+.++|++|++  .+++.+|+.||+
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i  112 (258)
T PRK11701         38 VGESGSGKTTLLNALSARLAPD-----AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNI  112 (258)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHH
Confidence            5999999999999999999887     8999999987     5431         22499999997  367778999999


Q ss_pred             HHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 007344           65 SLAAELQLPEILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAF  143 (607)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~  143 (607)
                      .+......  .....+.++.+.++++.+++.+ ..     ++.++.||||||||++||++|+.+|++|+|||||+|||+.
T Consensus       113 ~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~  185 (258)
T PRK11701        113 GERLMAVG--ARHYGDIRATAGDWLERVEIDAARI-----DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS  185 (258)
T ss_pred             HHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHH-----hCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence            76432211  1122344567889999999953 22     3457789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          144 QAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       144 ~~~~i~~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++..+.+.|++++++ |.|||+++|++ ..+...+|++++|++|++++.|++++
T Consensus       186 ~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~  238 (258)
T PRK11701        186 VQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGRVVESGLTDQ  238 (258)
T ss_pred             HHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHH
Confidence            999999999999764 89999999996 46777899999999999999997655

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=3.1e-34  Score=320.20  Aligned_cols=178  Identities=24%  Similarity=0.433  Sum_probs=155.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||||+|+|+++++     +|+|.++|+++...      .+.+|||+|++.+++.+||+||+.+....    
T Consensus        43 iG~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----  113 (510)
T PRK15439         43 LGGNGAGKSTLMKIIAGIVPPD-----SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK----  113 (510)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc----
Confidence            6999999999999999999887     89999999887532      13599999999999999999999875321    


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                         ..+.+++++++++.+||.+..+     +.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus       114 ---~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  185 (510)
T PRK15439        114 ---RQASMQKMKQLLAALGCQLDLD-----SSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRE  185 (510)
T ss_pred             ---chHHHHHHHHHHHHcCCCcccc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence               1234567889999999965544     45678999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++|+|||+++|++. .+...||++++|++|++++.|++++
T Consensus       186 ~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~  226 (510)
T PRK15439        186 LLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTAD  226 (510)
T ss_pred             HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHH
Confidence            9888999999999964 6778899999999999999998765

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=2.9e-34  Score=311.61  Aligned_cols=184  Identities=29%  Similarity=0.432  Sum_probs=160.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeC--CC-----ccceEEEEccCC--CCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS--SN-----KAYKFAYVRQED--LFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~--~~-----~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~   71 (607)
                      +|+||||||||.|+|+|+.+|+     +|+|.++|.+.  +.     .++++-+|+|++  .+.|.+||++++.-.....
T Consensus       323 VGeSGsGKSTlar~i~gL~~P~-----~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~  397 (539)
T COG1123         323 VGESGSGKSTLARILAGLLPPS-----SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH  397 (539)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence            6999999999999999999997     89999999762  11     124577777776  7899999999999887755


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                      ...  ...++++++.++++.+||.    ....++++++||||||||++|||||+.+|++|++|||||.||+..+..++++
T Consensus       398 ~~~--~~~~~~~rv~~ll~~VgL~----~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnL  471 (539)
T COG1123         398 GGG--SGAERRARVAELLELVGLP----PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNL  471 (539)
T ss_pred             ccc--chHHHHHHHHHHHHHcCCC----HHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHH
Confidence            332  2566777899999999996    3366789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       152 L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |+++.+ .|.|.++++||. ..+...||||.+|++|++|+.||.++
T Consensus       472 l~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iVE~G~~~~  516 (539)
T COG1123         472 LKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGPTEK  516 (539)
T ss_pred             HHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCeEEEeCCHHH
Confidence            999984 599999999995 58899999999999999999997655

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-34  Score=293.87  Aligned_cols=189  Identities=29%  Similarity=0.412  Sum_probs=153.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCC---CCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMAS---PRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~---~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||||+|+|+++++   .....+|+|.++|.++...     .+.++|++|++.++..+||+||+.+......
T Consensus        33 ~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~  112 (272)
T PRK13547         33 LGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHA  112 (272)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccc
Confidence            6999999999999999998764   1112379999999887532     2348999999876666899999987532111


Q ss_pred             C--CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCC
Q 007344           73 P--EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI---------ASPSVIYADEPTTGLD  141 (607)
Q Consensus        73 ~--~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~---------~~p~illLDEPtsGLD  141 (607)
                      .  .... .+..++++++++.+||.+..+     +.+..|||||||||+||++|+         .+|++|+|||||+|||
T Consensus       113 ~~~~~~~-~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD  186 (272)
T PRK13547        113 RRAGALT-HRDGEIAWQALALAGATALVG-----RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD  186 (272)
T ss_pred             cccccCC-HHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCC
Confidence            0  1112 234456889999999965443     456789999999999999999         5999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          142 AFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       142 ~~~~~~i~~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.++..+.+.|++++++ |+|||+++|++. .+...||++++|++|++++.|++++
T Consensus       187 ~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  241 (272)
T PRK13547        187 LAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPAD  241 (272)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence            99999999999999875 899999999964 6778899999999999999987654

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.6e-34  Score=288.93  Aligned_cols=190  Identities=26%  Similarity=0.348  Sum_probs=153.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+|+|+|+.++......+|+|.++|.++..      .++.++|++|++.+++ .||.||+.+.....  .
T Consensus        35 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~  111 (249)
T PRK14253         35 IGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--G  111 (249)
T ss_pred             ECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--C
Confidence            5999999999999999998753111137999999987632      1245999999998887 79999998865432  1


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ....+..++++.+.++.+++.+.... .-+..+++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  190 (249)
T PRK14253        112 IKDKKVLDEVVERSLRGAALWDEVKD-RLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEE  190 (249)
T ss_pred             CCchHHHHHHHHHHHHHcCCchhhhH-HhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            11233445667888888888532211 22446789999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++ ++|||+++|++. .+...||++++|++|+++..|++++
T Consensus       191 ~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  230 (249)
T PRK14253        191 LKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDTQV  230 (249)
T ss_pred             Hhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            976 589999999964 7888899999999999999887544

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1.1e-33  Score=290.56  Aligned_cols=184  Identities=27%  Similarity=0.357  Sum_probs=154.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~   70 (607)
                      +||||||||||+++|+|..++.     +|+|.++|.++...        .++++|++|+.  .+++..|+.|++.+....
T Consensus        44 ~G~nGsGKSTLl~~l~Gl~~p~-----sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~  118 (268)
T PRK10419         44 LGRSGCGKSTLARLLVGLESPS-----QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH  118 (268)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh
Confidence            5999999999999999998876     89999999876431        24699999997  467788999998765431


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      .  ......+..++++++++.+|+..    ...+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus       119 ~--~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~  192 (268)
T PRK10419        119 L--LSLDKAERLARASEMLRAVDLDD----SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR  192 (268)
T ss_pred             h--ccCCHHHHHHHHHHHHHHcCCCh----hHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH
Confidence            1  11234445567899999999952    22344677899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .|++++++ |.|+|+++|++ ..+..+||++++|++|++++.|++++
T Consensus       193 ~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~  238 (268)
T PRK10419        193 LLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIVETQPVGD  238 (268)
T ss_pred             HHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEeeeCChhh
Confidence            99999864 89999999996 46778899999999999999998766

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.6e-34  Score=324.22  Aligned_cols=184  Identities=24%  Similarity=0.328  Sum_probs=157.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~   70 (607)
                      +||||||||||+|+|+|+++++     +|+|.++|+++...        +++++||+|++  .+++.+||.|++.+....
T Consensus       356 vG~nGsGKSTLlk~i~Gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~  430 (623)
T PRK10261        356 VGESGSGKSTTGRALLRLVESQ-----GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV  430 (623)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCC-----CcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence            6999999999999999999887     89999999876431        23599999997  588999999999886543


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      +.  ....++.++++.++++.+||..    ...++++++|||||||||+||++|+.+|++|||||||+|||+.++.++++
T Consensus       431 ~~--~~~~~~~~~~~~~~L~~~gL~~----~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~  504 (623)
T PRK10261        431 HG--LLPGKAAAARVAWLLERVGLLP----EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN  504 (623)
T ss_pred             cC--CCCHHHHHHHHHHHHHHcCCCH----HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            21  1123445677899999999952    12345678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +|++++++ |.|||++||++ ..+..+||++++|++|++++.|++++
T Consensus       505 ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G~iv~~g~~~~  550 (623)
T PRK10261        505 LLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLGQIVEIGPRRA  550 (623)
T ss_pred             HHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence            99999865 89999999996 47788999999999999999998765

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=291.43  Aligned_cols=190  Identities=28%  Similarity=0.376  Sum_probs=154.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+|+|+|+.++..+...+|+|.++|.++...      +++++|++|++.+++ .||+||+.+.....  .
T Consensus        53 ~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~  129 (276)
T PRK14271         53 MGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--K  129 (276)
T ss_pred             ECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--c
Confidence            59999999999999999987521112389999999886431      345999999998888 79999998865422  1


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ..+.++.++++.++++.+||.+..++. -++.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus       130 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  208 (276)
T PRK14271        130 LVPRKEFRGVAQARLTEVGLWDAVKDR-LSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRS  208 (276)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCchhhhH-hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            123444555678889999986432221 2346789999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++ +.|||+++|++ ..+...+|++++|++|+++..|++++
T Consensus       209 ~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~  248 (276)
T PRK14271        209 LAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQ  248 (276)
T ss_pred             Hhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            976 48999999996 47788899999999999999988654

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=1.3e-34  Score=291.90  Aligned_cols=177  Identities=27%  Similarity=0.460  Sum_probs=141.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|||||||||||++|+|+.+++     +|+|.++|.++...     +++++|++|++.+++ .||+||+.+...     .
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~  102 (237)
T cd03252          34 VGRSGSGKSTLTKLIQRFYVPE-----NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----G  102 (237)
T ss_pred             ECCCCCCHHHHHHHHhcCcCCC-----CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----C
Confidence            5999999999999999999887     89999999876432     245999999988775 699999977431     1


Q ss_pred             CCHHHHH-----HHHHHHHHHc--CCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERD-----EYVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~-----~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .......     ..+.+.++.+  ++.+.     .+..++.|||||||||+||++|+.+|++++|||||+|||+.+...+
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-----~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l  177 (237)
T cd03252         103 MSMERVIEAAKLAGAHDFISELPEGYDTI-----VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI  177 (237)
T ss_pred             CCHHHHHHHHHHcCcHHHHHhCcccccch-----hhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHH
Confidence            1111111     1123444444  33222     2346789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++++ |+|||+++|++. .+. .||++++|++|++++.|++++
T Consensus       178 ~~~l~~~~~-~~tiii~sH~~~-~~~-~~d~v~~l~~G~i~~~~~~~~  222 (237)
T cd03252         178 MRNMHDICA-GRTVIIIAHRLS-TVK-NADRIIVMEKGRIVEQGSHDE  222 (237)
T ss_pred             HHHHHHhcC-CCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEEcCHHH
Confidence            999999974 899999999985 454 599999999999999987654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.7e-34  Score=292.34  Aligned_cols=188  Identities=24%  Similarity=0.334  Sum_probs=150.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|||||||||||++|+|+.++......+|+|.++|.++..       .+++++|++|++.+++. ||+||+.+.+..+. 
T Consensus        45 ~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-  122 (269)
T PRK14259         45 IGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARING-  122 (269)
T ss_pred             ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcC-
Confidence            5999999999999999998631000128999999987642       12459999999988885 99999998765431 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                        .. .+.+++++++++.+++..... ...+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus       123 --~~-~~~~~~~~~~l~~~~l~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~  198 (269)
T PRK14259        123 --YT-GDMDELVERSLRKAAVWDECK-DKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMH  198 (269)
T ss_pred             --Cc-HHHHHHHHHHHHHhCCcchhh-hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence              12 223456778888888743111 12345678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecC-----------CeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTE-----------GKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~-----------G~iv~~G~~~~  196 (607)
                      ++++ ++|||+++|++ ..+...||++++|++           |++++.|++++
T Consensus       199 ~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~  250 (269)
T PRK14259        199 ELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKK  250 (269)
T ss_pred             HHhc-CCEEEEEeCCH-HHHHHhcCEEEEEeccccccccccccceEEEeCCHHH
Confidence            9965 78999999996 478889999999996           66888887655

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9e-34  Score=315.93  Aligned_cols=183  Identities=26%  Similarity=0.372  Sum_probs=155.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||||+|+|+.+++     +|+|.++|+++...      ++.++||+|++.+++.+||.||+.+........
T Consensus        36 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~  110 (501)
T PRK11288         36 MGENGAGKSTLLKILSGNYQPD-----AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG  110 (501)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccC
Confidence            6999999999999999999887     89999999887432      245999999999999999999998864211111


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      .....+.+++++++++.+||.+..     ++.+++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus       111 ~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  185 (501)
T PRK11288        111 IVNRRLLNYEAREQLEHLGVDIDP-----DTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRE  185 (501)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCc-----CCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            123344556789999999996443     345678999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA  194 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~  194 (607)
                      ++++|+|||+++|++. .+...||++++|++|+++..++.
T Consensus       186 ~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~  224 (501)
T PRK11288        186 LRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD  224 (501)
T ss_pred             HHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence            9888999999999964 67788999999999999877654

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=8.7e-34  Score=277.64  Aligned_cols=150  Identities=51%  Similarity=0.881  Sum_probs=134.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc--CCCCCCccceEEEECCeeCCC--ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGLLEVNGKPSSN--KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~--~~~~~~~~~G~I~~~G~~~~~--~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+++|+|+.  ++.     +|+|.++|+++..  ..++++|++|++.+++.+|++||+.+.....     
T Consensus        41 ~G~nGsGKStLl~~i~Gl~~~~~~-----~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-----  110 (194)
T cd03213          41 MGPSGAGKSTLLNALAGRRTGLGV-----SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-----  110 (194)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCC-----ceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-----
Confidence            5999999999999999998  776     8999999998754  2356999999999999999999997643210     


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                                                      .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus       111 --------------------------------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~  158 (194)
T cd03213         111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA  158 (194)
T ss_pred             --------------------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence                                            599999999999999999999999999999999999999999999998


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      ++|+|+|+++|++..++...+|++++|++|++++.|
T Consensus       159 ~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~  194 (194)
T cd03213         159 DTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG  194 (194)
T ss_pred             hCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence            779999999999865677889999999999998764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.3e-34  Score=291.47  Aligned_cols=185  Identities=24%  Similarity=0.306  Sum_probs=150.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcC-----CCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLM-----ASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAA   68 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~-----~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~   68 (607)
                      +||||||||||||+|+|+.+     ++     +|+|.++|+++..       ..++++|++|++.+++. ||+||+.+..
T Consensus        53 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~-----~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~  126 (268)
T PRK14248         53 IGPSGCGKSTFLRSINRMNDLIPSARS-----EGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHAL  126 (268)
T ss_pred             ECCCCCCHHHHHHHHHhcccccCCCCC-----ceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHH
Confidence            59999999999999999864     33     7999999988642       12459999999988885 9999998865


Q ss_pred             HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      ....  .......++.+.+.++.+++.+... ...++.++.||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus       127 ~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l  203 (268)
T PRK14248        127 KYAG--ERRKSVLDEIVEESLTKAALWDEVK-DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI  203 (268)
T ss_pred             HhcC--CCcHHHHHHHHHHHHHHcCCCcchH-HHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHH
Confidence            4321  1122334456788889988852111 122456789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++++ ++|||+++|++. .+...||++++|++|++++.|++++
T Consensus       204 ~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~  249 (268)
T PRK14248        204 EELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQ  249 (268)
T ss_pred             HHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999999965 689999999964 6788899999999999999987644

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=287.84  Aligned_cols=190  Identities=25%  Similarity=0.308  Sum_probs=152.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+|+|+|+.++.+....+|+|.++|+++...       .+.++|++|++.+++. ||+||+.+....+. 
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~-  115 (253)
T PRK14261         38 IGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG-  115 (253)
T ss_pred             ECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC-
Confidence            59999999999999999875321101279999999886431       2459999999988885 99999998765432 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       .....+.++.+.++++.+++.+...+ ..++.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       116 -~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~  193 (253)
T PRK14261        116 -EKNKKTLDTIVEKSLKGAALWDEVKD-RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIE  193 (253)
T ss_pred             -CCCHHHHHHHHHHHHHHhcCchhhHH-HhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence             11233445678888999888432111 1245678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ ++|||+++|++. .+.+.+|++++|++|+++..|++++
T Consensus       194 ~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~~~~  234 (253)
T PRK14261        194 DLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDKTTQ  234 (253)
T ss_pred             HHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCCHHH
Confidence            9976 589999999964 6778899999999999999888654

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.8e-34  Score=261.90  Aligned_cols=183  Identities=30%  Similarity=0.407  Sum_probs=159.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC--C---------ccceEEEEccCCCCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--N---------KAYKFAYVRQEDLFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~--~---------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~   69 (607)
                      +||||+|||||++.|.=+..|.     +|+..+.|...+  +         .++.+|+|+|+-.++|.+||.|||.-+-.
T Consensus        34 lgpsgagkssllr~lnlle~p~-----sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~  108 (242)
T COG4161          34 LGPSGAGKSSLLRVLNLLEMPR-----SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC  108 (242)
T ss_pred             ECCCCCchHHHHHHHHHHhCCC-----CCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH
Confidence            5999999999999999888776     899988876432  1         12459999999999999999999976532


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                       +. ...++++.+.++.++|+++.|.+.+|     +.+-.|||||+|||+|||||+.+|++|++||||+.|||+-..+++
T Consensus       109 -kv-~gl~~~qa~~~a~ellkrlrl~~~ad-----r~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv  181 (242)
T COG4161         109 -RV-LGLSKDQALARAEKLLKRLRLKPYAD-----RYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIV  181 (242)
T ss_pred             -HH-hCCCHHHHHHHHHHHHHHhccccccc-----cCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHH
Confidence             21 24678888899999999999976665     466789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++|+..|.|-++++|.. ....+.+.+|+.|.+|++++.|+.+.
T Consensus       182 ~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a~~  227 (242)
T COG4161         182 SIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDASC  227 (242)
T ss_pred             HHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecchhh
Confidence            99999999999999999996 46677899999999999999998653

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.4e-34  Score=309.07  Aligned_cols=177  Identities=36%  Similarity=0.536  Sum_probs=151.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc-----ceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA-----YKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~-----~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+++|+|+.+++     +|+|.+||.+..+..     ++++||+|++.+|+. |++||+.++..     .
T Consensus       353 vG~SGaGKSTLl~lL~G~~~~~-----~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~  421 (559)
T COG4988         353 VGASGAGKSTLLNLLLGFLAPT-----QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----D  421 (559)
T ss_pred             ECCCCCCHHHHHHHHhCcCCCC-----CceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----c
Confidence            6999999999999999999987     899999999876643     569999999999997 99999998642     2


Q ss_pred             CCHHHHHHHHHHHHHHcCCCcc------ccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSC------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~------~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      .++    +.+.+++++.||.+.      .|+.+|+ ..++|||||+|||++||||+.+++++++||||++||.++++.|.
T Consensus       422 ~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~  496 (559)
T COG4988         422 ASD----EEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIIL  496 (559)
T ss_pred             CCH----HHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHH
Confidence            233    345566666666543      3555664 67899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.|.+++++ +|++++||++.  ....+|+|++|++|+++..|..++
T Consensus       497 ~~l~~l~~~-ktvl~itHrl~--~~~~~D~I~vld~G~l~~~g~~~~  540 (559)
T COG4988         497 QALQELAKQ-KTVLVITHRLE--DAADADRIVVLDNGRLVEQGTHEE  540 (559)
T ss_pred             HHHHHHHhC-CeEEEEEcChH--HHhcCCEEEEecCCceeccCCHHH
Confidence            999999875 99999999964  445689999999999999998766

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=1.3e-33  Score=287.71  Aligned_cols=187  Identities=26%  Similarity=0.317  Sum_probs=151.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDL--FFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|+.++.. ...+|+|.++|+++...   .+.++||+|++.  +.+.+|+.+++.+.+....   
T Consensus        35 ~G~nGsGKSTLl~~l~Gl~~~~~-~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---  110 (254)
T PRK10418         35 VGGSGSGKSLTCAAALGILPAGV-RQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---  110 (254)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCC-CCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---
Confidence            69999999999999999998720 00289999999887532   245999999974  4566899999876543221   


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      ...  .++++.++++.+||.+..  ...++.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus       111 ~~~--~~~~~~~~l~~~~l~~~~--~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~  186 (254)
T PRK10418        111 KPA--DDATLTAALEAVGLENAA--RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESI  186 (254)
T ss_pred             CCh--HHHHHHHHHHHcCCCChh--hhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence            112  235688999999996421  0224467889999999999999999999999999999999999999999999999


Q ss_pred             Hhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          156 AQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       156 a~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++ |+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       187 ~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~  227 (254)
T PRK10418        187 VQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGDVET  227 (254)
T ss_pred             HHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence            764 899999999964 6778899999999999999887654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=9.5e-34  Score=307.61  Aligned_cols=189  Identities=29%  Similarity=0.390  Sum_probs=165.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQED--LFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~   69 (607)
                      +|.|||||||+.++|.|++++.+ ...+|+|.++|.++...         .++|+|++|++  .+.|-+||.+.+.-...
T Consensus        41 vGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~  119 (539)
T COG1123          41 VGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALR  119 (539)
T ss_pred             EcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHH
Confidence            69999999999999999998764 35689999999865321         24699999997  56777999999988777


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      .+..  .+.++.++++.++|+.+||.+-...   ++++++|||||||||.||+||+.+|++|++||||++||+.++.+|+
T Consensus       120 ~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL  194 (539)
T COG1123         120 LHGK--GSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQIL  194 (539)
T ss_pred             Hhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHH
Confidence            6643  3478888999999999999875543   6789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++|+++. +.|.++|++|||+ .-+.++||||++|.+|++++.|++++
T Consensus       195 ~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~~~~  241 (539)
T COG1123         195 DLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGPTEE  241 (539)
T ss_pred             HHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecCHHH
Confidence            9999998 6799999999997 47889999999999999999999876

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=8e-34  Score=277.41  Aligned_cols=150  Identities=45%  Similarity=0.773  Sum_probs=132.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcC--CCCCCccceEEEECCeeCCC-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM--ASPRLHLSGLLEVNGKPSSN-KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~--~~~~~~~~G~I~~~G~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +|||||||||||++|+|+.+  ++     +|+|.++|+++.. ..++++|++|++.+++.+||+||+.+....+      
T Consensus        39 ~G~nGsGKSTLl~~l~G~~~~~~~-----~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------  107 (192)
T cd03232          39 MGESGAGKTTLLDVLAGRKTAGVI-----TGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR------  107 (192)
T ss_pred             ECCCCCCHHHHHHHHhCCCcCCCc-----ceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh------
Confidence            59999999999999999864  43     8999999988742 2356999999999999999999998753210      


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                                                     .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       108 -------------------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~  156 (192)
T cd03232         108 -------------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD  156 (192)
T ss_pred             -------------------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence                                           5999999999999999999999999999999999999999999999987


Q ss_pred             cCCeEEEEecCChhHHHhhhcceeeecC-CeeeeeC
Q 007344          158 DGHTVICSIHQPRGSVYFKFDDIVLLTE-GKLVYAG  192 (607)
Q Consensus       158 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~-G~iv~~G  192 (607)
                      +|+|+|+++|++...+...||++++|++ |++++.|
T Consensus       157 ~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         157 SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            8999999999986456788999999998 9999875

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=290.92  Aligned_cols=190  Identities=26%  Similarity=0.322  Sum_probs=153.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+++|+|+.++......+|+|.++|.++..       .++.++|++|++.+++. ||+||+.+...... 
T Consensus        57 ~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-  134 (272)
T PRK14236         57 IGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG-  134 (272)
T ss_pred             ECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC-
Confidence            5999999999999999998741000138999999988642       13469999999988886 99999988754321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ....++.+++++++++.+++.+...+ ..+..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       135 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~  212 (272)
T PRK14236        135 -INNRRVLDEAVERSLRGAALWDEVKD-RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELIT  212 (272)
T ss_pred             -CCcHHHHHHHHHHHHHHcCCChhHHH-HhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence             11233344668889999998532111 1245678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ +.|||+++|++. .+...||++++|++|+++..|++++
T Consensus       213 ~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  253 (272)
T PRK14236        213 ELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGDTDT  253 (272)
T ss_pred             HHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCCHHH
Confidence            9976 789999999964 6778899999999999999987654

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.5e-34  Score=289.62  Aligned_cols=190  Identities=24%  Similarity=0.342  Sum_probs=153.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|+||||||||+|+|+|+.++++....+|+|.++|+++..       .+.+++|++|++.+++ .||+||+.+....+. 
T Consensus        39 ~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~-  116 (259)
T PRK14260         39 IGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA-  116 (259)
T ss_pred             ECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc-
Confidence            5999999999999999998753100137999999987642       1235999999998887 899999988754331 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ..+..+.+++++++++.+|+.+... ...++.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       117 -~~~~~~~~~~~~~~l~~~~l~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~  194 (259)
T PRK14260        117 -KLPQADLDEIVESALKGAALWQEVK-DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIH  194 (259)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCcchhh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence             1233444567888999998842211 12345678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeec-----CCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLT-----EGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~-----~G~iv~~G~~~~  196 (607)
                      ++++ ++|||+++|++. .+...+|++++|+     +|++++.|++++
T Consensus       195 ~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~  240 (259)
T PRK14260        195 SLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQ  240 (259)
T ss_pred             HHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHH
Confidence            9975 689999999964 7888999999997     599999998765

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-33  Score=286.88  Aligned_cols=190  Identities=25%  Similarity=0.375  Sum_probs=151.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|+||||||||+|+|+|..++.+....+|+|.++|+++..       .++.++|++|++.+++ .||+||+.+....+. 
T Consensus        36 ~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~-  113 (251)
T PRK14251         36 IGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG-  113 (251)
T ss_pred             ECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC-
Confidence            5999999999999999998621000127999999987642       1235999999998886 699999988654321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ....+..++.++++++.+++..... ...+..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       114 -~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~  191 (251)
T PRK14251        114 -VKDKELIDQRVEESLKQAAIWKETK-DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLM  191 (251)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCCcchH-HHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHH
Confidence             1123334456788999999843211 11244678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ +.|||+++|++. .+...+|++++|++|+++..|++++
T Consensus       192 ~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  232 (251)
T PRK14251        192 ELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGPTEE  232 (251)
T ss_pred             HHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCCHHH
Confidence            9864 689999999964 6778899999999999999887654

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=2.4e-34  Score=289.25  Aligned_cols=177  Identities=28%  Similarity=0.460  Sum_probs=143.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|+++...     +++++|++|++.+++ .||+||+.+....     
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----  102 (234)
T cd03251          34 VGPSGSGKSTLVNLIPRFYDVD-----SGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----  102 (234)
T ss_pred             ECCCCCCHHHHHHHHhccccCC-----CCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----
Confidence            5999999999999999999887     89999999876432     245999999998887 6999999875321     


Q ss_pred             CCHHHHHH-----HHHHHHHHc--CCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDE-----YVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      ....+..+     .+++.++.+  ++.+..     +..++.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l  177 (234)
T cd03251         103 ATREEVEEAARAANAHEFIMELPEGYDTVI-----GERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV  177 (234)
T ss_pred             CCHHHHHHHHHHcCcHHHHHhcccCcceee-----ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence            11221111     234555555  553322     345788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++++ |+|||+++|++. .+.. ||++++|++|++++.|++++
T Consensus       178 ~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~  222 (234)
T cd03251         178 QAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHEE  222 (234)
T ss_pred             HHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHHH
Confidence            999999974 899999999975 5554 99999999999998887544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.7e-34  Score=271.91  Aligned_cols=185  Identities=31%  Similarity=0.446  Sum_probs=158.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||||.|+|.+.|+     +|++.+||.+++..     .++.+.+||+..+-...||+|-+.++...... .
T Consensus        33 lGPNGAGKSTlLk~LsGel~p~-----~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g  106 (259)
T COG4559          33 LGPNGAGKSTLLKALSGELSPD-----SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-G  106 (259)
T ss_pred             ECCCCccHHHHHHHhhCccCCC-----CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-C
Confidence            6999999999999999999887     89999999987653     35689999998875567999999998653311 1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA------SPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~------~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ...++..+.+++.|...++.+.+..     ....|||||||||.+||.|++      ++++||||||||.||...+..++
T Consensus       107 ~~~~e~~~i~~~ala~~d~~~la~R-----~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl  181 (259)
T COG4559         107 REPEEDERIAAQALAATDLSGLAGR-----DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL  181 (259)
T ss_pred             CCchhhHHHHHHHHHHcChhhhhcc-----chhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHH
Confidence            2223555678899999999776654     456899999999999999986      45699999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCc
Q 007344          150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE  197 (607)
Q Consensus       150 ~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~  197 (607)
                      ++.++++++|..|+++.||.+ ....+||||++|++||++..|++.++
T Consensus       182 ~laR~la~~g~~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g~p~~v  228 (259)
T COG4559         182 RLARQLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDV  228 (259)
T ss_pred             HHHHHHHhcCCcEEEEEccch-HHHHhhheeeeeeCCeEeecCCHHHh
Confidence            999999999999999999976 56778999999999999999999884

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=315.67  Aligned_cols=185  Identities=25%  Similarity=0.433  Sum_probs=153.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccC---CCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQE---DLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~---~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||||+|+|+.+++     +|+|.++|+++...      ++++|||+|+   ..+++.+||.||+.+....+
T Consensus       295 ~G~NGsGKSTLlk~i~Gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~  369 (510)
T PRK09700        295 AGLVGSGRTELMNCLFGVDKRA-----GGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLK  369 (510)
T ss_pred             ECCCCCCHHHHHHHHhCCCcCC-----CCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccc
Confidence            6999999999999999999887     89999999876431      2359999998   46888999999998754321


Q ss_pred             ---CC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 007344           72 ---LP---EILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQ  144 (607)
Q Consensus        72 ---~~---~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~  144 (607)
                         ..   ......+.+++++++++.+||. +..+     +.++.|||||||||+||++|+.+|++|||||||+|||+.+
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~  444 (510)
T PRK09700        370 DGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVN-----QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA  444 (510)
T ss_pred             cccccccccccChHHHHHHHHHHHHhcCCCCCCcc-----CccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHH
Confidence               00   0012223345688999999995 4444     4567899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          145 AEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       145 ~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +..+++.|++++++|.|||+++|++ ..+...||++++|++|++++.++..+
T Consensus       445 ~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~  495 (510)
T PRK09700        445 KAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGRLTQILTNRD  495 (510)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEecCcc
Confidence            9999999999988899999999996 47788999999999999998887633

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=6.6e-34  Score=348.70  Aligned_cols=188  Identities=29%  Similarity=0.408  Sum_probs=165.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+|+|+|.++++     +|+|.++|+++...    ++++||++|++.+++.+||+|++.+.++++.   .
T Consensus      1971 LG~NGAGKTTLlkmL~Gll~pt-----sG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~ 2042 (2272)
T TIGR01257      1971 LGVNGAGKTTTFKMLTGDTTVT-----SGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---V 2042 (2272)
T ss_pred             ECCCCCcHHHHHHHHhCCCCCC-----ccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---C
Confidence            6999999999999999999987     89999999987432    3459999999999999999999999877652   3


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      +.++.+++++++++.+||.+.+|     ++++.|||||||||+||+||+.+|+|+||||||+|||+.+++.+.+.|++++
T Consensus      2043 ~~~~~~~~v~~lLe~lgL~~~~d-----k~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~ 2117 (2272)
T TIGR01257      2043 PAEEIEKVANWSIQSLGLSLYAD-----RLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117 (2272)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence            44555677899999999966554     4567899999999999999999999999999999999999999999999998


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhh
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFS  203 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~  203 (607)
                      ++|+|||++||++ +++..+|||+++|++|++++.|++++ .+..|.
T Consensus      2118 ~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~-Lk~~~g 2162 (2272)
T TIGR01257      2118 REGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQH-LKSKFG 2162 (2272)
T ss_pred             hCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH-HHHHhC
Confidence            8899999999996 58889999999999999999999877 555553

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=4.9e-34  Score=284.41  Aligned_cols=174  Identities=32%  Similarity=0.515  Sum_probs=143.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|..++.     +|+|.++|.++...     ++.++|++|++.+++ .||.||+.+...     .
T Consensus        36 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~  104 (220)
T cd03245          36 IGRVGSGKSTLLKLLAGLYKPT-----SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----L  104 (220)
T ss_pred             ECCCCCCHHHHHHHHhcCcCCC-----CCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----C
Confidence            5999999999999999999876     89999999876431     245999999998887 599999876421     1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccc------cCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNV------GDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~v------g~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ..    ++.+.++++.+++.+..+...      -...+..||||||||++||++|+.+|++|+|||||+|||+.++..+.
T Consensus       105 ~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~  180 (220)
T cd03245         105 AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK  180 (220)
T ss_pred             CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence            11    234567788888865544321      12245799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       150 ~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      +.|++++++ +|||+++|++. .+ +.+|++++|++|++++.|
T Consensus       181 ~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         181 ERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             HHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence            999999764 89999999975 44 689999999999998654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=1.7e-33  Score=286.64  Aligned_cols=183  Identities=25%  Similarity=0.368  Sum_probs=149.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCee-----CCCc---------cceEEEEccCCC--CCCCCCHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-----SSNK---------AYKFAYVRQEDL--FFSQLTVRETL   64 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~-----~~~~---------~~~i~yv~Q~~~--l~~~lTV~E~l   64 (607)
                      +|||||||||||++|+|+.++.     +|+|.++|.+     +...         .+.++|++|++.  +.+.+|+.||+
T Consensus        35 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i  109 (253)
T TIGR02323        35 VGESGSGKSTLLGCLAGRLAPD-----HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANI  109 (253)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHH
Confidence            5999999999999999999887     8999999976     4321         134899999974  45667999998


Q ss_pred             HHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 007344           65 SLAAELQLPEILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAF  143 (607)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~  143 (607)
                      .+......  .....+.++.++++++.+|+.+ ..     +..++.|||||||||+||++|+.+|++|+|||||+|||+.
T Consensus       110 ~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~-----~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~  182 (253)
T TIGR02323       110 GERLMAIG--ARHYGNIRAAAHDWLEEVEIDPTRI-----DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS  182 (253)
T ss_pred             HHHHHHhc--ccchHHHHHHHHHHHHHcCCChhhh-----hcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence            76432111  0112234567889999999952 33     3457789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          144 QAEKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       144 ~~~~i~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++..+.+.|+++++ .|.|+|+++|++ ..+...+|++++|++|++++.|++++
T Consensus       183 ~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~i~~~~~~~~  235 (253)
T TIGR02323       183 VQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGRVVESGLTDQ  235 (253)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEECCHHH
Confidence            99999999999875 489999999996 46777899999999999999987654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-33  Score=288.55  Aligned_cols=188  Identities=22%  Similarity=0.333  Sum_probs=153.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|+||||||||+|+|+|++++.+....+|+|.++|+++..       .++.++|++|++.++ .+|+.||+.+....+. 
T Consensus        40 ~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~-  117 (261)
T PRK14263         40 IGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR-  117 (261)
T ss_pred             ECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC-
Confidence            5999999999999999998762111138999999988642       124599999999887 5899999998765431 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                        . ..+..++++++++.++|.+..+... +..++.||||||||++||++|+++|++|+|||||+|||+.++..+.+.|+
T Consensus       118 --~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~  193 (261)
T PRK14263        118 --Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMV  193 (261)
T ss_pred             --c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence              1 2234467889999999854322222 34678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeec--------CCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLT--------EGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~--------~G~iv~~G~~~~  196 (607)
                      ++++ ++|+|+++|++. .+...+|++++|+        +|++++.|+.++
T Consensus       194 ~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~  242 (261)
T PRK14263        194 ELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQ  242 (261)
T ss_pred             HHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHH
Confidence            9964 789999999964 6788899999995        899999997654

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-33  Score=295.66  Aligned_cols=190  Identities=23%  Similarity=0.313  Sum_probs=154.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|||||||||||++|+|..++..+...+|+|.++|.++..       .+++++||+|++.+++ .|++||+.|.....  
T Consensus       114 vG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~--  190 (329)
T PRK14257        114 IGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN--  190 (329)
T ss_pred             ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc--
Confidence            5999999999999999998632111237999999998752       1346999999998886 69999999865432  


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                      ....++..++.++++++.++|.+..++.+ ++.+..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+
T Consensus       191 ~~~~~~~~~~~~~~~l~~~~L~~~l~~~~-~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~  269 (329)
T PRK14257        191 GINDRKILEKIVEKSLKSAALWDEVKDDL-DKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELIL  269 (329)
T ss_pred             CCChHHHHHHHHHHHHHHcCCcchhhhhh-hCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            11122333455788899998854333444 34688999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ ++|+|+++|++. .+.+.+|+|++|++|++++.|++.+
T Consensus       270 ~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~  310 (329)
T PRK14257        270 ELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEAGETKT  310 (329)
T ss_pred             HHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9876 699999999964 6777899999999999999998766

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=2e-34  Score=327.57  Aligned_cols=179  Identities=32%  Similarity=0.490  Sum_probs=151.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+|+|+|+++|.     +|+|.+||.+++..     ++.+|||+||+.+|.. |++||+.++..     .
T Consensus       505 vG~SGsGKSTL~KLL~gly~p~-----~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p-----~  573 (709)
T COG2274         505 VGRSGSGKSTLLKLLLGLYKPQ-----QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNP-----E  573 (709)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCC-----C
Confidence            6999999999999999999998     89999999998654     4569999999999987 99999988642     2


Q ss_pred             CCHHHHHHH-----HHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           76 LSVEERDEY-----VNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        76 ~~~~~~~~~-----v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      .+.++..+.     +.+.+..  +..-.||.+|+ ...+||||||||++|||+|+++|+||+||||||+||+.+.+.|.+
T Consensus       574 ~~~e~i~~A~~~ag~~~fI~~--lP~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~  650 (709)
T COG2274         574 ATDEEIIEAAQLAGAHEFIEN--LPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ  650 (709)
T ss_pred             CCHHHHHHHHHHhCcHHHHHh--ccccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHH
Confidence            333333221     2333433  44456788876 678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .|.++.. |+|+|+++|.++  ..+.||||++|++|+++..|+.++
T Consensus       651 ~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~e  693 (709)
T COG2274         651 NLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEE  693 (709)
T ss_pred             HHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCceeccCCHHH
Confidence            9999865 699999999864  677899999999999999999776

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=2.8e-33  Score=312.00  Aligned_cols=185  Identities=23%  Similarity=0.397  Sum_probs=155.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCC---CCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED---LFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||||+|+|+.+++     +|+|.++|+++...      ++++|||+|++   .+++.+||.||+.+.....
T Consensus       284 iG~NGsGKSTLl~~l~G~~~p~-----~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~  358 (501)
T PRK10762        284 SGLMGAGRTELMKVLYGALPRT-----SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY  358 (501)
T ss_pred             ecCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhh
Confidence            6999999999999999999887     89999999886432      23599999995   5788899999998753211


Q ss_pred             CC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344           72 LP---EILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        72 ~~---~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~  147 (607)
                      ..   .....++.+++++++++.+||. +..     +++++.|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~  433 (501)
T PRK10762        359 FSRAGGSLKHADEQQAVSDFIRLFNIKTPSM-----EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKE  433 (501)
T ss_pred             hcccccccCHHHHHHHHHHHHHhcCCCCCCc-----cCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHH
Confidence            00   0122334456788999999994 344     34567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       148 i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.+.|++++++|.|||++||++ ..+...||++++|++|+++..|++++
T Consensus       434 l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~  481 (501)
T PRK10762        434 IYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISGEFTREQ  481 (501)
T ss_pred             HHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEecccc
Confidence            9999999988899999999996 47888999999999999999998776

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-33  Score=291.19  Aligned_cols=188  Identities=27%  Similarity=0.377  Sum_probs=150.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcC--CCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLM--ASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~--~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +|||||||||||++|+|+.+  +.  ...+|+|.++|.++..       .+++++|++|++.+++. ||.||+.+....+
T Consensus        71 ~G~nGsGKSTLl~~L~Gl~~~~p~--~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~  147 (286)
T PRK14275         71 IGPSGCGKSTFLRAINRMNDLIPS--CHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLH  147 (286)
T ss_pred             ECCCCCCHHHHHHHHhcccccCCC--CCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhc
Confidence            59999999999999999854  20  0028999999987632       12459999999988875 9999999875432


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                      .  ..+....++++.++++.+|+.+.. ....++.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus       148 ~--~~~~~~~~~~~~~~l~~~~l~~~l-~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~  224 (286)
T PRK14275        148 G--INDKKQLEEIVEKSLRKAALWDEV-SDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDL  224 (286)
T ss_pred             C--CCcHHHHHHHHHHHHHHhCCccch-hhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence            1  112333456678889998874211 0112456789999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       152 L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |+++++ ++|||+++|++. .+...+|++++|++|+++..|++++
T Consensus       225 L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~~~~  267 (286)
T PRK14275        225 IQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAPTAQ  267 (286)
T ss_pred             HHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999875 589999999964 6778899999999999999987654

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=3.2e-33  Score=279.75  Aligned_cols=171  Identities=35%  Similarity=0.423  Sum_probs=143.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+++|+|..+++     +|+|.++|++....       .+...+.+.+||+||+.+....+.   .+.++
T Consensus        54 ~G~nGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~~~~~-------~~~~~~~~~~tv~enl~~~~~~~~---~~~~~  118 (224)
T cd03220          54 IGRNGAGKSTLLRLLAGIYPPD-----SGTVTVRGRVSSLL-------GLGGGFNPELTGRENIYLNGRLLG---LSRKE  118 (224)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEchhh-------cccccCCCCCcHHHHHHHHHHHcC---CCHHH
Confidence            5999999999999999999887     89999999875321       122345577899999988765321   23344


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH  160 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~  160 (607)
                      .+++++++++.+||.+..++     .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+
T Consensus       119 ~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~  193 (224)
T cd03220         119 IDEKIDEIIEFSELGDFIDL-----PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK  193 (224)
T ss_pred             HHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence            55678889999999765544     5678999999999999999999999999999999999999999999999987789


Q ss_pred             eEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          161 TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       161 tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      |||+++|++. ++...+|++++|++|++++.|
T Consensus       194 tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         194 TVILVSHDPS-SIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence            9999999964 677889999999999998765

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-33  Score=313.51  Aligned_cols=185  Identities=23%  Similarity=0.328  Sum_probs=154.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC-CCCCccceEEEECCeeCCCc------cceEEEEccCC---CCCCCCCHHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA-SPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED---LFFSQLTVRETLSLAAEL   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~-~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~   70 (607)
                      +||||||||||+|+|+|++++ +     +|+|.++|+++...      +++++|++|+.   .+++.+||.||+.+....
T Consensus       294 ~G~NGsGKSTLlk~i~Gl~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~  368 (506)
T PRK13549        294 AGLVGAGRTELVQCLFGAYPGRW-----EGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALD  368 (506)
T ss_pred             eCCCCCCHHHHHHHHhCCCCCCC-----CcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhh
Confidence            699999999999999999874 5     79999999876431      23599999985   478889999999875321


Q ss_pred             cCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344           71 QLPE--ILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        71 ~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~  147 (607)
                      ....  ..+.++.+++++++++.+||. +..     +++++.|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~  443 (506)
T PRK13549        369 RFTGGSRIDDAAELKTILESIQRLKVKTASP-----ELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYE  443 (506)
T ss_pred             hhccCcccChHHHHHHHHHHHHhcCccCCCc-----ccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHH
Confidence            1100  112334456789999999995 334     34567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       148 i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.++|++++++|+|||++||++ ..+.+.||++++|++|+++..|++++
T Consensus       444 l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~  491 (506)
T PRK13549        444 IYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDLINHN  491 (506)
T ss_pred             HHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEecccc
Confidence            9999999998899999999996 47888999999999999999998766

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=1.7e-33  Score=274.38  Aligned_cols=156  Identities=32%  Similarity=0.476  Sum_probs=132.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCC--CCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDL--FFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|+++...       ++.++|++|++.  ++ ..||+||+.+.....
T Consensus        24 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~tv~~nl~~~~~~~   97 (190)
T TIGR01166        24 LGANGAGKSTLLLHLNGLLRPQ-----SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AADVDQDVAFGPLNL   97 (190)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceeEEECCEEccccccchHHHHhhEEEEecChhhccc-cccHHHHHHHHHHHc
Confidence            5999999999999999999887     89999999886411       235999999973  45 469999999875432


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                         ..+.++.+++++++++.+||.+..|     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus        98 ---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~  169 (190)
T TIGR01166        98 ---GLSEAEVERRVREALTAVGASGLRE-----RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI  169 (190)
T ss_pred             ---CCCHHHHHHHHHHHHHHcCchhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence               1234445567889999999965443     45678999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEEEecCCh
Q 007344          152 LRQLAQDGHTVICSIHQPR  170 (607)
Q Consensus       152 L~~la~~g~tvi~~~H~p~  170 (607)
                      |++++++|+|||+++|++.
T Consensus       170 l~~~~~~~~tili~sH~~~  188 (190)
T TIGR01166       170 LRRLRAEGMTVVISTHDVD  188 (190)
T ss_pred             HHHHHHcCCEEEEEeeccc
Confidence            9999888999999999974

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-33  Score=284.45  Aligned_cols=190  Identities=23%  Similarity=0.315  Sum_probs=150.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+++|+|+.+..+....+|+|.++|.++..       ..+.++|++|++.+++ .||+||+.+....+. 
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~-  114 (252)
T PRK14255         37 IGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG-  114 (252)
T ss_pred             ECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC-
Confidence            5999999999999999986521100127999999987632       1246999999998888 699999988754321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ....+..++++.+.++.+++..... ...+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       115 -~~~~~~~~~~~~~~l~~~~l~~~i~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  192 (252)
T PRK14255        115 -VKDKAVLDEAVETSLKQAAIWDEVK-DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLL  192 (252)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCccchh-hHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence             1122333455777888888742111 11244678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ +.|+|+++|++. .+...+|++++|++|+++..|++.+
T Consensus       193 ~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  233 (252)
T PRK14255        193 ELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFADTKQ  233 (252)
T ss_pred             HHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9976 589999999964 6778899999999999999887654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=1.5e-33  Score=316.05  Aligned_cols=183  Identities=27%  Similarity=0.386  Sum_probs=154.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~   70 (607)
                      +||||||||||+|+|+|+++ +     +|+|.++|+++...        +++++||+|+.  .+++.+||+||+.+....
T Consensus       318 ~G~nGsGKSTLlk~l~Gl~~-~-----~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~  391 (529)
T PRK15134        318 VGESGSGKSTTGLALLRLIN-S-----QGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV  391 (529)
T ss_pred             ECCCCCCHHHHHHHHhCcCC-C-----CcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh
Confidence            69999999999999999985 4     79999999876431        23599999996  488889999999887543


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           71 QLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      +.. ..+..+.+++++++++.+||. +..     ++.++.|||||||||+||++|+.+|++|+|||||+|||+.++..++
T Consensus       392 ~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~  465 (529)
T PRK15134        392 HQP-TLSAAQREQQVIAVMEEVGLDPETR-----HRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL  465 (529)
T ss_pred             ccc-cCChHHHHHHHHHHHHHcCCCHHHH-----hcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHH
Confidence            211 123344556789999999995 233     3467789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.|++++++ |+|||++||++ ..+...||++++|++|+++..|++++
T Consensus       466 ~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~  512 (529)
T PRK15134        466 ALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGEVVEQGDCER  512 (529)
T ss_pred             HHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEEEcCHHH
Confidence            999999865 89999999996 46778899999999999999987654

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-33  Score=288.64  Aligned_cols=190  Identities=23%  Similarity=0.308  Sum_probs=150.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|+|||||||||++|+|.+++......+|+|.++|.++..       ..+.++|++|++.+++. ||+||+.+....+. 
T Consensus        56 ~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~-  133 (271)
T PRK14238         56 IGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG-  133 (271)
T ss_pred             ECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC-
Confidence            5999999999999999998610000128999999988632       12459999999988874 99999998754321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ..+.+..++.+.+.++.+++.+.... ..+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus       134 -~~~~~~~~~~~~~~l~~~~~~~~l~~-~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~  211 (271)
T PRK14238        134 -IKDKKTLDEIVEKSLRGAAIWDELKD-RLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQ  211 (271)
T ss_pred             -CCcHHHHHHHHHHHHHHcCCcchHHH-HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence             11223334567777887765321111 1245678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ ++|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       212 ~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~  252 (271)
T PRK14238        212 ELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDDTDK  252 (271)
T ss_pred             HHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9976 799999999964 6778899999999999999987654

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=4.2e-34  Score=324.69  Aligned_cols=178  Identities=32%  Similarity=0.476  Sum_probs=147.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|.+ |+     +|+|.+||.++++.     +++++||+|++.+|+. |++||+.++.    + .
T Consensus       382 vG~SGsGKSTL~~lL~g~~-p~-----~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~  449 (588)
T PRK11174        382 VGPSGAGKTSLLNALLGFL-PY-----QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-D  449 (588)
T ss_pred             ECCCCCCHHHHHHHHhcCC-CC-----CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-C
Confidence            6999999999999999999 65     79999999988653     3469999999999987 9999999862    1 2


Q ss_pred             CCHHHHHHHH-----HHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           76 LSVEERDEYV-----NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        76 ~~~~~~~~~v-----~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      .+.++..+..     ++.++.+  .+-.||.+|+. ...||||||||++|||||+++|+||+||||||+||+.++..+.+
T Consensus       450 ~~~eei~~al~~a~l~~~i~~l--p~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~  526 (588)
T PRK11174        450 ASDEQLQQALENAWVSEFLPLL--PQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ  526 (588)
T ss_pred             CCHHHHHHHHHHhCHHHHHHhc--ccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence            3444333222     2233333  33457888864 67899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .|+++. +++|+|+++|+++  ....+|+|++|++|++++.|+.++
T Consensus       527 ~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~e  569 (588)
T PRK11174        527 ALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAE  569 (588)
T ss_pred             HHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHH
Confidence            999885 5799999999974  456699999999999999998655

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-33  Score=321.03  Aligned_cols=186  Identities=25%  Similarity=0.328  Sum_probs=156.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC----------C--------c-cceEEEEccCC--CCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS----------N--------K-AYKFAYVRQED--LFFSQLT   59 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~----------~--------~-~~~i~yv~Q~~--~l~~~lT   59 (607)
                      +||||||||||+|+|+|+++++     +|+|.++|..+.          .        . .+++|||+|++  .+++.+|
T Consensus        48 vG~nGsGKSTLl~~l~Gll~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~t  122 (623)
T PRK10261         48 VGESGSGKSVTALALMRLLEQA-----GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFT  122 (623)
T ss_pred             ECCCCChHHHHHHHHHcCCCCC-----CeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCC
Confidence            6999999999999999999886     799999886331          0        0 13599999997  6888899


Q ss_pred             HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 007344           60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTG  139 (607)
Q Consensus        60 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsG  139 (607)
                      |.||+.+..+.+.  ..+..+.++++.++++.+||.+.  ....++++.+|||||||||+||+||+.+|++|||||||+|
T Consensus       123 v~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~--~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~  198 (623)
T PRK10261        123 VGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA--QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTA  198 (623)
T ss_pred             HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh--hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCc
Confidence            9999999865421  23455566789999999999531  1123457789999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          140 LDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       140 LD~~~~~~i~~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ||+.++.++.++|++++++ |+|||++||++ ..+...||+|++|++|++++.|++++
T Consensus       199 LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri~vl~~G~i~~~g~~~~  255 (623)
T PRK10261        199 LDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRVLVMYQGEAVETGSVEQ  255 (623)
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEeeCCeecccCCHHH
Confidence            9999999999999999854 89999999996 46778999999999999999888655

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=4.8e-33  Score=283.03  Aligned_cols=185  Identities=26%  Similarity=0.320  Sum_probs=150.3

Q ss_pred             CCCCCCcHHHHHHHHHcC--cCCCCCCccceEEEECCeeCCCc----cc--eEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQ--LMASPRLHLSGLLEVNGKPSSNK----AY--KFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~--~~~~~~~~~~G~I~~~G~~~~~~----~~--~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +|+||||||||+++|+|+  .++.     +|+|.++|.++...    ..  .++|++|++.+++.+|+.|++.+......
T Consensus        39 ~G~nGsGKSTLl~~i~Gl~~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~  113 (252)
T CHL00131         39 MGPNGSGKSTLSKVIAGHPAYKIL-----EGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKR  113 (252)
T ss_pred             ECCCCCCHHHHHHHHcCCCcCcCC-----CceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhh
Confidence            599999999999999997  3454     89999999886532    12  37899999999999999999987643211


Q ss_pred             C----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCC-CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 007344           73 P----EILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVR-GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE  146 (607)
Q Consensus        73 ~----~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~-~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~  146 (607)
                      .    ......+..+++.++++.+|+. +..+     ..+. +|||||||||+||++|+.+|++++|||||+|||+.++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~  188 (252)
T CHL00131        114 KFQGLPELDPLEFLEIINEKLKLVGMDPSFLS-----RNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALK  188 (252)
T ss_pred             cccccccccHHHHHHHHHHHHHHcCCchhhhc-----cccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence            0    0112223446678899999995 2333     3344 59999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCChhHHHhh-hcceeeecCCeeeeeCCCCC
Q 007344          147 KVMEALRQLAQDGHTVICSIHQPRGSVYFK-FDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       147 ~i~~~L~~la~~g~tvi~~~H~p~~~i~~~-~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.+.|++++++|+|||+++|++. .+... +|++++|++|++++.|+++.
T Consensus       189 ~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~~~~~~~  238 (252)
T CHL00131        189 IIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQNGKIIKTGDAEL  238 (252)
T ss_pred             HHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeCCEEEEecChhh
Confidence            999999999888999999999964 45554 89999999999999998763

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=5.4e-34  Score=287.57  Aligned_cols=177  Identities=28%  Similarity=0.444  Sum_probs=140.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|..++.     +|+|.++|.++...     .++++|++|++.+++ .||+||+.+....+    
T Consensus        35 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~----  104 (238)
T cd03249          35 VGSSGCGKSTVVSLLERFYDPT-----SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA----  104 (238)
T ss_pred             EeCCCCCHHHHHHHHhccCCCC-----CCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC----
Confidence            5999999999999999999887     89999999876432     245999999998876 59999998753211    


Q ss_pred             CCHHHHHH-----HHHHHHHHc--CCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDE-----YVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                       ..++..+     .+.+.++.+  ++.    +.. +..++.|||||||||+||++|+.+|++++|||||+|||+.++..+
T Consensus       105 -~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~-~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l  178 (238)
T cd03249         105 -TDEEVEEAAKKANIHDFIMSLPDGYD----TLV-GERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV  178 (238)
T ss_pred             -CHHHHHHHHHHcChHHHHHhhccccc----eee-ccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence             1111111     122233333  332    222 345689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|++++ +|+|||+++|++. ++. .||++++|++|++++.|+.++
T Consensus       179 ~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~  223 (238)
T cd03249         179 QEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHDE  223 (238)
T ss_pred             HHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHHH
Confidence            99999997 7999999999975 454 799999999999999887544

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-33  Score=285.49  Aligned_cols=191  Identities=27%  Similarity=0.373  Sum_probs=153.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCC-CCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASP-RLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~-~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+++|+|..+++. .+.+.|++.++|.+....     +.+++|++|++.+++.+||+||+.+......  
T Consensus        42 ~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--  119 (257)
T PRK14246         42 MGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--  119 (257)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--
Confidence            69999999999999999988762 223346666666654321     3459999999999999999999998754321  


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ...+++.+++++++++.+++.+.... .-+..++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~  198 (257)
T PRK14246        120 IKEKREIKKIVEECLRKVGLWKEVYD-RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE  198 (257)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCccchh-hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            12334555678899999999532111 12346788999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++ +.|||+++|++ ..+...||++++|++|+++..|+.++
T Consensus       199 ~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g~~~~  238 (257)
T PRK14246        199 LKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNE  238 (257)
T ss_pred             Hhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence            965 69999999996 46778899999999999999997654

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-33  Score=288.95  Aligned_cols=188  Identities=26%  Similarity=0.354  Sum_probs=150.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|||||||||||++|+|+.++......+|+|.++|.++..       .+++++|++|++.+++. ||.||+.+....+. 
T Consensus        71 ~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-  148 (285)
T PRK14254         71 IGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG-  148 (285)
T ss_pred             ECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC-
Confidence            5999999999999999998631000127999999987632       13469999999988885 99999988765431 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                        ... +.+++++++++.+||.+... ..-++.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+
T Consensus       149 --~~~-~~~~~~~~~l~~~~l~~~i~-~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~  224 (285)
T PRK14254        149 --YDG-DIDERVEESLRRAALWDEVK-DQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIE  224 (285)
T ss_pred             --CcH-HHHHHHHHHHHHcCCCchhH-HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence              122 34556889999999853111 11244678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhccee-eecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIV-LLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~-lL~~G~iv~~G~~~~  196 (607)
                      +++++ .|||+++|++. .+..++|+++ +|++|+++..|++++
T Consensus       225 ~~~~~-~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~  266 (285)
T PRK14254        225 ELAEE-YTVVIVTHNMQ-QAARISDKTAVFLTGGELVEFDDTDK  266 (285)
T ss_pred             HHhcC-CEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence            99864 89999999964 6778899975 679999999887544

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-33  Score=312.68  Aligned_cols=185  Identities=20%  Similarity=0.310  Sum_probs=155.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCC---CCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED---LFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||||+|+|..+++     +|+|.++|+++...      +..++|++|++   .+++.+||.||+.+.....
T Consensus       285 iG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~  359 (501)
T PRK11288        285 FGLVGAGRSELMKLLYGATRRT-----AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRH  359 (501)
T ss_pred             EcCCCCCHHHHHHHHcCCCcCC-----CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchh
Confidence            6999999999999999999886     89999999876432      24599999986   4888999999998754211


Q ss_pred             C-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344           72 L-PEI--LSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        72 ~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~  147 (607)
                      . +..  ....+.++.++++++.+|+. +..+     +.+..|||||||||+||++|+.+|++|||||||+|||+.++..
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~  434 (501)
T PRK11288        360 HLRAGCLINNRWEAENADRFIRSLNIKTPSRE-----QLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE  434 (501)
T ss_pred             hcccccccChHHHHHHHHHHHHhcCcccCCcc-----CccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHH
Confidence            1 001  12233345688999999993 4444     4567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       148 i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++|++++++|.|||++|||+ ..+..+||++++|++|++++.|++++
T Consensus       435 l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~  482 (501)
T PRK11288        435 IYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQ  482 (501)
T ss_pred             HHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEEcccc
Confidence            9999999998899999999996 57888999999999999999998766

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-33  Score=284.47  Aligned_cols=190  Identities=22%  Similarity=0.324  Sum_probs=153.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+++|+|+.+..+....+|+|.+||.++...       .++++|++|++.+++. |+.||+.+...... 
T Consensus        35 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~-  112 (250)
T PRK14266         35 IGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG-  112 (250)
T ss_pred             ECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC-
Confidence            59999999999999999864110001279999999886431       2459999999988885 99999987654321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ....+..++++.+.++.+||.+..... -+..++.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+
T Consensus       113 -~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~  190 (250)
T PRK14266        113 -EDDEDFIEERVEESLKAAALWDEVKDK-LDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIH  190 (250)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCchhHHHH-HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence             122344566788999999985432212 245678999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ |+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       191 ~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~~~~  231 (250)
T PRK14266        191 KLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGLTDQ  231 (250)
T ss_pred             HHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCCHHH
Confidence            9965 789999999964 7788899999999999999987654

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=3.3e-33  Score=311.90  Aligned_cols=185  Identities=20%  Similarity=0.293  Sum_probs=153.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCC---CCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED---LFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||||+|+|+.+|+     +|+|.++|.++...      +.+++|++|+.   .+++.+||.|++......+
T Consensus       295 ~G~NGsGKSTLl~~i~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~  369 (510)
T PRK15439        295 AGVVGAGRTELAETLYGLRPAR-----GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR  369 (510)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCC-----CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhh
Confidence            6999999999999999999887     89999999877532      23599999984   4788899999986431111


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      ........+.++.++++++.+||. +..|     ++++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+
T Consensus       370 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~  444 (510)
T PRK15439        370 RGFWIKPARENAVLERYRRALNIKFNHAE-----QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ  444 (510)
T ss_pred             hccccChHHHHHHHHHHHHHcCCCCCCcc-----CccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHH
Confidence            111111223345688999999995 4444     4567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .|++++++|.|||+++|++ ..+..+||++++|++|++++.|.+++
T Consensus       445 ~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~~  489 (510)
T PRK15439        445 LIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGAA  489 (510)
T ss_pred             HHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEcccc
Confidence            9999998899999999996 47888999999999999999887755

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.9e-33  Score=314.81  Aligned_cols=186  Identities=28%  Similarity=0.366  Sum_probs=153.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEEC-Cee---CCC--------ccceEEEEccCCCCCCCCCHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVN-GKP---SSN--------KAYKFAYVRQEDLFFSQLTVRETLSLAA   68 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~-G~~---~~~--------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~   68 (607)
                      +||||||||||+|+|+|+++++     +|+|.++ |.+   +..        .+++++|++|++.+++.+||.||+.+..
T Consensus       316 ~G~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~  390 (520)
T TIGR03269       316 VGTSGAGKTTLSKIIAGVLEPT-----SGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAI  390 (520)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHH
Confidence            6999999999999999999886     8999996 532   111        1235999999998999999999998764


Q ss_pred             HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.    .+.++.+++++++++.+||.+.......+++++.|||||||||+||++|+.+|++|||||||+|||+.++..+
T Consensus       391 ~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l  466 (520)
T TIGR03269       391 GLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDV  466 (520)
T ss_pred             HcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            331    2233345678899999999642100122456789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++.|++++++ |.|||+++|++. .+..+||++++|++|++++.|++++
T Consensus       467 ~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~  514 (520)
T TIGR03269       467 THSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDPEE  514 (520)
T ss_pred             HHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence            9999999864 899999999964 6788999999999999999887654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=6.3e-34  Score=285.35  Aligned_cols=178  Identities=26%  Similarity=0.392  Sum_probs=140.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||||+|+|+.++.     +|+|.++|.++...     ++.++|++|++.+++. ||+||+.+....     
T Consensus        35 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----  103 (229)
T cd03254          35 VGPTGAGKTTLINLLMRFYDPQ-----KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----  103 (229)
T ss_pred             ECCCCCCHHHHHHHHhcCcCCC-----CCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----
Confidence            5999999999999999999886     89999999876432     2459999999988886 999999875321     


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccc------cccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADS------NVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~------~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ....    .+++.++.+++.+..+.      ...+..++.|||||||||+||++|+.+|++++|||||+|||+.++..++
T Consensus       104 ~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~  179 (229)
T cd03254         104 ATDE----EVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ  179 (229)
T ss_pred             CCHH----HHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence            1111    23333344433221111      1123457899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.|++++ +|+|||+++|++. .+. .+|++++|++|++++.|+.++
T Consensus       180 ~~l~~~~-~~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~~~~  223 (229)
T cd03254         180 EALEKLM-KGRTSIIIAHRLS-TIK-NADKILVLDDGKIIEEGTHDE  223 (229)
T ss_pred             HHHHHhc-CCCEEEEEecCHH-HHh-hCCEEEEEeCCeEEEeCCHHH
Confidence            9999996 5899999999975 454 599999999999998876543

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=3e-33  Score=313.71  Aligned_cols=191  Identities=25%  Similarity=0.328  Sum_probs=155.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCCC--CCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDL--FFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~   69 (607)
                      +||||||||||||+|+|.+++......+|+|.++|+++...         .+++|||+|++.  +++.+||+|++.+...
T Consensus        41 iG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~  120 (529)
T PRK15134         41 VGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLS  120 (529)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHH
Confidence            69999999999999999998621111379999999886431         135999999974  6777899999876543


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ...  ..+..+.+++++++++.+||.+..  ...++++++|||||||||+||++|+.+|++|+|||||+|||+.++..++
T Consensus       121 ~~~--~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~  196 (529)
T PRK15134        121 LHR--GMRREAARGEILNCLDRVGIRQAA--KRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQIL  196 (529)
T ss_pred             Hhc--CCCHHHHHHHHHHHHHHCCCCChH--HHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHH
Confidence            211  133455667899999999996421  1124467899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.|++++++ |+|||+++|++. .+...||++++|++|++++.|++++
T Consensus       197 ~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~  243 (529)
T PRK15134        197 QLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQNGRCVEQNRAAT  243 (529)
T ss_pred             HHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence            999999865 899999999964 6778899999999999999987654

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-33  Score=288.10  Aligned_cols=184  Identities=28%  Similarity=0.426  Sum_probs=148.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--cceEEEEccCCCCC--CCCCHHHHHHHHHHccCC-CC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFF--SQLTVRETLSLAAELQLP-EI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~~l~--~~lTV~E~l~~~~~~~~~-~~   75 (607)
                      +||||||||||||+|+|+++++     +|+|.++|+++...  ..+++|++|++.+.  ...+++|++.+....... ..
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~  113 (272)
T PRK15056         39 VGVNGSGKSTLFKALMGFVRLA-----SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR  113 (272)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccccc
Confidence            5999999999999999999887     89999999886432  23599999997652  234788988654211000 01


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      ....+.+++++++++.+||.+..++     .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus       114 ~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~  188 (272)
T PRK15056        114 RAKKRDRQIVTAALARVDMVEFRHR-----QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL  188 (272)
T ss_pred             CCCHHHHHHHHHHHHHcCChhHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            1122334567889999999765544     56789999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       156 a~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++|+|||+++|++. .+...||+++++ +|++++.|++++
T Consensus       189 ~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~  227 (272)
T PRK15056        189 RDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTET  227 (272)
T ss_pred             HhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHh
Confidence            888999999999964 677889999887 899999987665

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-33  Score=287.21  Aligned_cols=188  Identities=25%  Similarity=0.330  Sum_probs=150.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+++|+|+.++......+|+|.++|+++..       .+++++|++|+..+++. ||.||+.+....+. 
T Consensus        52 iG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~-  129 (274)
T PRK14265         52 IGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG-  129 (274)
T ss_pred             ECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC-
Confidence            5999999999999999997642100127999999987632       12469999999988875 99999988654321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                        .. ...++.+++.++.+++.+... ..-+..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+
T Consensus       130 --~~-~~~~~~~~~~l~~~~l~~~l~-~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~  205 (274)
T PRK14265        130 --YK-GNLDELVEDSLRRAAIWEEVK-DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL  205 (274)
T ss_pred             --ch-HHHHHHHHHHHHHcccchhhH-HHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence              11 123345677888888742111 12245678899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeec---------CCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLT---------EGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~---------~G~iv~~G~~~~  196 (607)
                      ++++ ++|||+++|++. .+...+|++++|+         +|++++.|++++
T Consensus       206 ~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~  255 (274)
T PRK14265        206 ELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQ  255 (274)
T ss_pred             HHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHH
Confidence            9975 689999999964 7888999999997         899999998766

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.3e-33  Score=274.74  Aligned_cols=166  Identities=29%  Similarity=0.380  Sum_probs=140.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+++|+|..+++     +|+|.++|.++...    .++++|++|++.+++.+||.||+.+....+.   .
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~p~-----~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~  104 (204)
T PRK13538         33 EGPNGAGKTSLLRILAGLARPD-----AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P  104 (204)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c
Confidence            5999999999999999999887     89999999886432    3459999999999999999999988765421   1


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                         +.+++++++++.+||.+..|     +.++.||||||||++||++|+++|++++|||||+|||+.++..+.+.|++++
T Consensus       105 ---~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  176 (204)
T PRK13538        105 ---GDDEALWEALAQVGLAGFED-----VPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA  176 (204)
T ss_pred             ---cHHHHHHHHHHHcCCHHHhh-----CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence               22456889999999965444     4567899999999999999999999999999999999999999999999998


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeee
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLL  183 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL  183 (607)
                      ++|.|||+++|++. .+....+|++++
T Consensus       177 ~~~~tiii~sh~~~-~i~~~~~~~~~~  202 (204)
T PRK13538        177 EQGGMVILTTHQDL-PVASDKVRKLRL  202 (204)
T ss_pred             HCCCEEEEEecChh-hhccCCceEEec
Confidence            88999999999964 555555666665

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=2.6e-33  Score=313.66  Aligned_cols=182  Identities=28%  Similarity=0.339  Sum_probs=152.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc--CCCCCCccceEEEEC-----------------------CeeCC-------C--------
Q 007344            1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGLLEVN-----------------------GKPSS-------N--------   40 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~--~~~~~~~~~G~I~~~-----------------------G~~~~-------~--------   40 (607)
                      +||||||||||||+|+|..  +++     +|+|.++                       |.++.       .        
T Consensus        32 iG~nGsGKSTLl~~l~Gl~~~~p~-----~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  106 (520)
T TIGR03269        32 LGRSGAGKSVLMHVLRGMDQYEPT-----SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRR  106 (520)
T ss_pred             ECCCCCCHHHHHHHHhhcccCCCC-----ceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHH
Confidence            6999999999999999996  465     7999987                       22110       0        


Q ss_pred             ccceEEEEccC-CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHH
Q 007344           41 KAYKFAYVRQE-DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS  119 (607)
Q Consensus        41 ~~~~i~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs  119 (607)
                      .+++++||+|+ +.+++.+||+||+.+.....   ..+.++.++++.++++.+||.+..     ++.++.|||||||||+
T Consensus       107 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~LSgGq~qrv~  178 (520)
T TIGR03269       107 IRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLSHRI-----THIARDLSGGEKQRVV  178 (520)
T ss_pred             hhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhh-----hcCcccCCHHHHHHHH
Confidence            12359999997 67888899999999875432   123455567899999999996544     3457789999999999


Q ss_pred             HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       120 Ia~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++|++. .+...||++++|++|++++.|++++
T Consensus       179 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~  255 (520)
T TIGR03269       179 LARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDE  255 (520)
T ss_pred             HHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHH
Confidence            99999999999999999999999999999999999975 5899999999964 6778899999999999999887765

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=4e-33  Score=270.14  Aligned_cols=142  Identities=30%  Similarity=0.488  Sum_probs=127.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCC---CCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED---LFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||+++|+|..+++     +|+|.++|.++...      +++++|++|+.   .+++.+|++||+.+...  
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~--  104 (182)
T cd03215          32 AGLVGNGQTELAEALFGLRPPA-----SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL--  104 (182)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh--
Confidence            5999999999999999999887     89999999887542      24699999984   57888999999876421  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                                                            ||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus       105 --------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~  146 (182)
T cd03215         105 --------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL  146 (182)
T ss_pred             --------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence                                                  999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCee
Q 007344          152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       152 L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i  188 (607)
                      |++++++|+|+|+++|++ .++...+|++++|++|++
T Consensus       147 l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         147 IRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI  182 (182)
T ss_pred             HHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence            999987799999999996 478888999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=9e-32  Score=311.10  Aligned_cols=181  Identities=34%  Similarity=0.504  Sum_probs=149.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|||||||||++++|.+.+.|+     +|+|.+||.++++.     +.++|.|.|+|.+|.. |++||+.|+..     +
T Consensus       385 VG~SGsGKST~i~LL~RfydP~-----~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~-----d  453 (1228)
T KOG0055|consen  385 VGPSGSGKSTLIQLLARFYDPT-----SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKP-----D  453 (1228)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCC-----CceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCC-----c
Confidence            6999999999999999999998     89999999998764     3469999999998875 99999998631     2


Q ss_pred             CCHHHHHHHH---HHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           76 LSVEERDEYV---NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        76 ~~~~~~~~~v---~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                      .+.++..+..   +..--...|.+-.||.+|++.+ .||||||||++|||||+++|+|||||||||+||+.+...+.+.|
T Consensus       454 at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL  532 (1228)
T KOG0055|consen  454 ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEAL  532 (1228)
T ss_pred             ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH
Confidence            3333332221   1111223455667899998544 49999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+. .+|+|.|+++|+.+ .+.. +|+++++++|++++.|.+++
T Consensus       533 d~~-~~grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~G~h~E  573 (1228)
T KOG0055|consen  533 DKA-SKGRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQGTHDE  573 (1228)
T ss_pred             HHh-hcCCeEEEEeeehh-hhhc-cCEEEEEECCEEEEecCHHH
Confidence            775 45899999999964 5655 89999999999999999877

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.7e-33  Score=309.51  Aligned_cols=185  Identities=24%  Similarity=0.328  Sum_probs=153.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC-CCCCccceEEEECCeeCCCc------cceEEEEccCC---CCCCCCCHHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA-SPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED---LFFSQLTVRETLSLAAEL   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~-~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~   70 (607)
                      +||||||||||||+|+|..+| .     +|+|.++|+++...      ++++|||+|+.   .+++.+||+||+.+...-
T Consensus       292 ~G~NGsGKSTLl~~l~G~~~p~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~  366 (500)
T TIGR02633       292 AGLVGAGRTELVQALFGAYPGKF-----EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLK  366 (500)
T ss_pred             eCCCCCCHHHHHHHHhCCCCCCC-----CeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhh
Confidence            699999999999999999975 4     79999999887431      24599999995   588999999999875421


Q ss_pred             cCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344           71 QLP--EILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        71 ~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~  147 (607)
                      ...  ......+.+++++++++.++|.+ ..     +++++.|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~  441 (500)
T TIGR02633       367 SFCFKMRIDAAAELQIIGSAIQRLKVKTASP-----FLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYE  441 (500)
T ss_pred             hhccCCcCCHHHHHHHHHHHHHhcCccCCCc-----cCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHH
Confidence            110  01223344567899999999952 23     34567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       148 i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++.|++++++|.|||++||++ ..+..+||++++|++|+++..++.++
T Consensus       442 l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~  489 (500)
T TIGR02633       442 IYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDFVNHA  489 (500)
T ss_pred             HHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEcccc
Confidence            9999999998899999999996 47888999999999999998776543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=4e-33  Score=267.93  Aligned_cols=138  Identities=37%  Similarity=0.641  Sum_probs=126.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+++|+|..++.     +|+|.++|+++...    +++++|++|++.+++.+||.||+.           
T Consensus        32 ~G~nGsGKStLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-----------   95 (173)
T cd03230          32 LGPNGAGKTTLIKIILGLLKPD-----SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK-----------   95 (173)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-----------
Confidence            5999999999999999999876     89999999876432    346999999999999999999963           


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                                                       ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus        96 ---------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~  142 (173)
T cd03230          96 ---------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK  142 (173)
T ss_pred             ---------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence                                             99999999999999999999999999999999999999999999998


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCee
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i  188 (607)
                      ++|.|+|+++|++. .+...+|++++|++|++
T Consensus       143 ~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         143 KEGKTILLSSHILE-EAERLCDRVAILNNGRI  173 (173)
T ss_pred             HCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence            77999999999964 67778999999999874

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=5.9e-33  Score=275.86  Aligned_cols=168  Identities=28%  Similarity=0.354  Sum_probs=144.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~   78 (607)
                      +||||||||||+|+|+|..+++     +|+|.++|+++...  .+.++|++|++.+++.+|++||+.+....+.   .  
T Consensus        43 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~--  112 (214)
T PRK13543         43 QGDNGAGKTTLLRVLAGLLHVE-----SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R--  112 (214)
T ss_pred             EcCCCCCHHHHHHHHhCCCCCC-----CeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C--
Confidence            5999999999999999999887     89999999887532  2359999999999999999999988764321   1  


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344           79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~  158 (607)
                       ..++.++++++.++|.+..+     ..++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       113 -~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  186 (214)
T PRK13543        113 -RAKQMPGSALAIVGLAGYED-----TLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG  186 (214)
T ss_pred             -cHHHHHHHHHHHcCChhhcc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence             12345778899999965544     456789999999999999999999999999999999999999999999999888


Q ss_pred             CCeEEEEecCChhHHHhhhcceeeecC
Q 007344          159 GHTVICSIHQPRGSVYFKFDDIVLLTE  185 (607)
Q Consensus       159 g~tvi~~~H~p~~~i~~~~D~v~lL~~  185 (607)
                      |+|+|+++|++ .++.+.+|++++++.
T Consensus       187 ~~tiii~sH~~-~~~~~~~~~i~~l~~  212 (214)
T PRK13543        187 GGAALVTTHGA-YAAPPVRTRMLTLEA  212 (214)
T ss_pred             CCEEEEEecCh-hhhhhhcceEEEEee
Confidence            99999999996 478889999999863

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.9e-33  Score=284.58  Aligned_cols=188  Identities=23%  Similarity=0.324  Sum_probs=149.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+|+|+|+.++.+....+|+|.++|+++..       .+++++|++|++.+++. ||.||+.+....+. 
T Consensus        42 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-  119 (264)
T PRK14243         42 IGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARING-  119 (264)
T ss_pred             ECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcC-
Confidence            5999999999999999987531000127999999987631       12459999999988884 99999988754321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                        .. .+.+++++++++.+++.+..+ ...+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus       120 --~~-~~~~~~~~~~l~~~~l~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~  195 (264)
T PRK14243        120 --YK-GDMDELVERSLRQAALWDEVK-DKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMH  195 (264)
T ss_pred             --cc-hHHHHHHHHHHHHhCchhhHH-HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence              11 223455777888888743211 12245678899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeec---------CCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLT---------EGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~---------~G~iv~~G~~~~  196 (607)
                      ++++ ++|||+++|++ ..+...||++++|+         +|++++.|++++
T Consensus       196 ~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~  245 (264)
T PRK14243        196 ELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEK  245 (264)
T ss_pred             HHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCceEEEeCCHHH
Confidence            9976 58999999996 47889999999998         799999998655

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=1.1e-32  Score=279.64  Aligned_cols=185  Identities=25%  Similarity=0.298  Sum_probs=147.6

Q ss_pred             CCCCCCcHHHHHHHHHcCc--CCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHH-cc
Q 007344            1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAE-LQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~--~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-~~   71 (607)
                      +||||||||||+++|+|+.  ++.     +|+|.++|.++...      +..++|++|++.+++.+|+.+++.+... .+
T Consensus        33 ~G~nGsGKSTLl~~l~Gl~~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~  107 (248)
T PRK09580         33 MGPNGSGKSTLSATLAGREDYEVT-----GGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR  107 (248)
T ss_pred             ECCCCCCHHHHHHHHcCCccCCCC-----ceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhh
Confidence            5999999999999999995  455     89999999876432      1349999999988888888777654321 11


Q ss_pred             CC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcC-CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 007344           72 LP---EILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKV-RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE  146 (607)
Q Consensus        72 ~~---~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~-~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~  146 (607)
                      ..   ......+.++++++.++.+++. +..+     ..+ +.|||||||||+||++|+.+|++|+|||||+|||+.++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~  182 (248)
T PRK09580        108 SYRGQEPLDRFDFQDLMEEKIALLKMPEDLLT-----RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALK  182 (248)
T ss_pred             cccccccchHHHHHHHHHHHHHHcCCChhhcc-----cCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHH
Confidence            00   0112223456788899999984 2232     233 379999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCChhHHHhh-hcceeeecCCeeeeeCCCCC
Q 007344          147 KVMEALRQLAQDGHTVICSIHQPRGSVYFK-FDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       147 ~i~~~L~~la~~g~tvi~~~H~p~~~i~~~-~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.+.|++++++|+|||+++|++. .+... +|++++|++|++++.|+.+.
T Consensus       183 ~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~  232 (248)
T PRK09580        183 IVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTL  232 (248)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHH
Confidence            999999999888899999999965 45555 89999999999999998653

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=7e-33  Score=272.68  Aligned_cols=163  Identities=31%  Similarity=0.383  Sum_probs=140.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +|+||||||||+++|+|..+++     +|+|.++|.+....    +++++|++|++.+++.+||+||+.+....     .
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~  101 (201)
T cd03231          32 TGPNGSGKTTLLRILAGLSPPL-----AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H  101 (201)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c
Confidence            5999999999999999999887     89999999886432    24699999999998899999999875321     1


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                          .+++++++++.+||.+..+     ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus       102 ----~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  172 (201)
T cd03231         102 ----SDEQVEEALARVGLNGFED-----RPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC  172 (201)
T ss_pred             ----cHHHHHHHHHHcCChhhhc-----CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence                2346788999999975544     3567899999999999999999999999999999999999999999999998


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeee
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLL  183 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL  183 (607)
                      ++|+|+|+++|++. +....+|+++++
T Consensus       173 ~~g~tiii~sH~~~-~~~~~~~~~~~~  198 (201)
T cd03231         173 ARGGMVVLTTHQDL-GLSEAGARELDL  198 (201)
T ss_pred             hCCCEEEEEecCch-hhhhccceeEec
Confidence            88999999999975 566789999887

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=5.6e-33  Score=278.13  Aligned_cols=175  Identities=26%  Similarity=0.373  Sum_probs=143.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|.++...     .++++|++|++.+++. ||+||+.+....+.   
T Consensus        39 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---  109 (225)
T PRK10247         39 TGPSGCGKSTLLKIVASLISPT-----SGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---  109 (225)
T ss_pred             ECCCCCCHHHHHHHHhcccCCC-----CCeEEECCEEcCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC---
Confidence            5999999999999999998887     89999999876432     2469999999988875 99999988654321   


Q ss_pred             CCHHHHHHHHHHHHHHcCCCc-cccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ..  ..+++++++++.+||.+ ..     ++.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus       110 ~~--~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (225)
T PRK10247        110 QQ--PDPAIFLDDLERFALPDTIL-----TKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR  182 (225)
T ss_pred             CC--hHHHHHHHHHHHcCCChHHh-----cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            11  12345788999999952 33     346778999999999999999999999999999999999999999999999


Q ss_pred             HHh-cCCeEEEEecCChhHHHhhhcceeeec-CCeeeeeCC
Q 007344          155 LAQ-DGHTVICSIHQPRGSVYFKFDDIVLLT-EGKLVYAGP  193 (607)
Q Consensus       155 la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~-~G~iv~~G~  193 (607)
                      +++ .|.|||+++|++. .+. .+|++++|+ ++..+..|.
T Consensus       183 ~~~~~~~tvii~sh~~~-~~~-~~d~i~~l~~~~~~~~~~~  221 (225)
T PRK10247        183 YVREQNIAVLWVTHDKD-EIN-HADKVITLQPHAGEMQEAR  221 (225)
T ss_pred             HHHhcCCEEEEEECChH-HHH-hCCEEEEEecccchHhhhh
Confidence            975 4899999999975 454 599999994 555555554

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=2e-33  Score=318.77  Aligned_cols=178  Identities=25%  Similarity=0.381  Sum_probs=148.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+|+|+|+++|+     +|+|.+||.++++.     +++++||+|++.+|+. |++||+.++.    +..
T Consensus       375 vG~sGsGKSTLl~ll~gl~~p~-----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~  444 (582)
T PRK11176        375 VGRSGSGKSTIANLLTRFYDID-----EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYAR----TEQ  444 (582)
T ss_pred             ECCCCCCHHHHHHHHHhccCCC-----CceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCC----CCC
Confidence            5999999999999999999987     89999999987653     3469999999999986 9999998752    112


Q ss_pred             CCHHHHHHHHHHHHHHcC-------CCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLG-------LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++    ++++++..|       |.+-.||.+|+ ..+.||||||||++|||+|+++|++++||||||+||+.++..+
T Consensus       445 ~~~~~----i~~al~~~~l~~~i~~lp~Gldt~ig~-~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i  519 (582)
T PRK11176        445 YSREQ----IEEAARMAYAMDFINKMDNGLDTVIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI  519 (582)
T ss_pred             CCHHH----HHHHHHHhCcHHHHHhcccccCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHH
Confidence            23333    444445444       33445788876 4678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++.|+++. +++|+|+++|+++  ..+.||+|++|++|++++.|+.++
T Consensus       520 ~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~  564 (582)
T PRK11176        520 QAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAE  564 (582)
T ss_pred             HHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999975 4799999999974  566799999999999999998655

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.3e-33  Score=323.96  Aligned_cols=174  Identities=28%  Similarity=0.379  Sum_probs=147.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+|+|+|+++|+     +|+|.+||.++++.     ++++|||+|++.+|+. |++||+.++..      
T Consensus       485 vG~sGsGKSTLlklL~gl~~p~-----~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------  552 (686)
T TIGR03797       485 VGPSGSGKSTLLRLLLGFETPE-----SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------  552 (686)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC------
Confidence            5999999999999999999987     89999999998753     3569999999999987 99999987521      


Q ss_pred             CCHHHHHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.+    .+.++++..|+.       +-.||.+|+ ...+||||||||++|||||+++|++|+||||||+||+.+++.+
T Consensus       553 ~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i  627 (686)
T TIGR03797       553 LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIV  627 (686)
T ss_pred             CCHH----HHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence            2233    344555555543       334677775 4678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++   ++|+|+++|+++  ....+|+|++|++|++++.|+.++
T Consensus       628 ~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~  670 (686)
T TIGR03797       628 SESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDE  670 (686)
T ss_pred             HHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHH
Confidence            9999886   589999999974  456699999999999999998665

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=2.2e-33  Score=282.75  Aligned_cols=177  Identities=28%  Similarity=0.438  Sum_probs=139.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|||||||||||++|+|+.++.     +|+|.++|.++...     ++.++|++|+..+++ .||+||+.+....     
T Consensus        33 ~G~nGsGKSTLl~~i~Gl~~~~-----~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----  101 (236)
T cd03253          33 VGPSGSGKSTILRLLFRFYDVS-----SGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----  101 (236)
T ss_pred             ECCCCCCHHHHHHHHhcccCCC-----CCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCC-----
Confidence            5999999999999999999887     89999999876432     235999999998886 6999999875321     


Q ss_pred             CCHHHHHHHHHHHHHHcCCCcc-------ccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSC-------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      ....+    +.+.++..++.+.       .++.. ++.++.|||||||||+||++|+.+|++++|||||+|||+.+...+
T Consensus       102 ~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l  176 (236)
T cd03253         102 ATDEE----VIEAAKAAQIHDKIMRFPDGYDTIV-GERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI  176 (236)
T ss_pred             CCHHH----HHHHHHHcCcHHHHHhccccccchh-hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            11121    2222233332211       11222 335789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++++ |+|||+++|++. .+. .+|++++|++|++++.|+.++
T Consensus       177 ~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~g~i~~~~~~~~  221 (236)
T cd03253         177 QAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKDGRIVERGTHEE  221 (236)
T ss_pred             HHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEECCEEEeeCCHHH
Confidence            999999987 999999999975 454 499999999999998876543

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=1.4e-32  Score=274.88  Aligned_cols=171  Identities=26%  Similarity=0.329  Sum_probs=141.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEEC--Ce--eCCCc---------cceEEEEccCCCCCCCCCHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVN--GK--PSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLA   67 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~--G~--~~~~~---------~~~i~yv~Q~~~l~~~lTV~E~l~~~   67 (607)
                      +||||||||||+++|+|.++++     +|+|.++  |.  ++...         .++++|++|++.+++.+||+|++.+.
T Consensus        40 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~  114 (224)
T TIGR02324        40 SGPSGAGKSTLLKSLYANYLPD-----SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP  114 (224)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHH
Confidence            5999999999999999999886     7999998  42  33211         23599999999999999999999886


Q ss_pred             HHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344           68 AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        68 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~  147 (607)
                      ....   .....+..+++.++++.+||.+..    .+..+++||||||||++||++|+.+|++++|||||+|||+.++..
T Consensus       115 ~~~~---~~~~~~~~~~~~~~l~~~~l~~~~----~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~  187 (224)
T TIGR02324       115 LLER---GVPREAARARARELLARLNIPERL----WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV  187 (224)
T ss_pred             HHHc---CCCHHHHHHHHHHHHHHcCCchhh----hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            5432   123344456788999999996421    234577899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeec
Q 007344          148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       148 i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                      +.+.|++++++|+|||+++|++ ..+...+|+++.+.
T Consensus       188 l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~  223 (224)
T TIGR02324       188 VVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT  223 (224)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence            9999999988899999999994 46667899998763

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-32  Score=279.94  Aligned_cols=174  Identities=22%  Similarity=0.293  Sum_probs=149.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+++|+|+++++     +|+|.++|.        ++++.|+..+.+.+||.||+.+.....   ....++
T Consensus        56 iG~NGsGKSTLlk~L~Gl~~p~-----~G~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~  119 (264)
T PRK13546         56 VGINGSGKSTLSNIIGGSLSPT-----VGKVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKE  119 (264)
T ss_pred             ECCCCCCHHHHHHHHhCCcCCC-----ceEEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHH
Confidence            5999999999999999999887     899999985        457778877788899999998765432   123455


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH  160 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~  160 (607)
                      ..+.++++++.++|.+..+     ..++.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+
T Consensus       120 ~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~  194 (264)
T PRK13546        120 IKAMTPKIIEFSELGEFIY-----QPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNK  194 (264)
T ss_pred             HHHHHHHHHHHcCCchhhc-----CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCC
Confidence            5566788899999865443     35678999999999999999999999999999999999999999999999988899


Q ss_pred             eEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          161 TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       161 tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |||+++|++ ..+...+|++++|++|++++.|+.++
T Consensus       195 tiIiisH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~  229 (264)
T PRK13546        195 TIFFVSHNL-GQVRQFCTKIAWIEGGKLKDYGELDD  229 (264)
T ss_pred             EEEEEcCCH-HHHHHHcCEEEEEECCEEEEeCCHHH
Confidence            999999996 46778899999999999999987654

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=4.7e-33  Score=316.31  Aligned_cols=176  Identities=26%  Similarity=0.399  Sum_probs=150.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+|+|+|+++|+     +|+|.+||.++++.     +++++||+|++.+|+. |++||+.++.      .
T Consensus       373 vG~SGsGKSTLl~lL~gl~~p~-----~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~  440 (592)
T PRK10790        373 VGHTGSGKSTLASLLMGYYPLT-----EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------D  440 (592)
T ss_pred             ECCCCCCHHHHHHHHhcccCCC-----CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------C
Confidence            5999999999999999999997     89999999988653     3569999999999997 9999998863      1


Q ss_pred             CCHHHHHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.    ++++++++.+|+.       +-.||.+|+ ....||||||||++|||||+++|+|++||||||+||+.+++.+
T Consensus       441 ~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i  515 (592)
T PRK10790        441 ISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI  515 (592)
T ss_pred             CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence            222    2355666666643       334677776 5678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++.+ ++|+|+++|+++  ....||+|++|++|+++..|+.++
T Consensus       516 ~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~  560 (592)
T PRK10790        516 QQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQ  560 (592)
T ss_pred             HHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHH
Confidence            999999865 699999999974  456699999999999999998765

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=1.9e-33  Score=281.44  Aligned_cols=174  Identities=29%  Similarity=0.460  Sum_probs=138.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|..+++     +|+|.++|+++...     .++++|++|++.+++ .||+||+.+.........
T Consensus        46 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~  119 (226)
T cd03248          46 VGPSGSGKSTVVALLENFYQPQ-----GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFEC  119 (226)
T ss_pred             ECCCCCCHHHHHHHHhcCcCCC-----CcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHH
Confidence            5999999999999999999887     89999999876432     245999999998876 599999987543110000


Q ss_pred             CCHHHHHHHHHHHHHHc--CCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                      ......+..+++.++.+  |+.+..     +..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       120 ~~~~~~~~~~~~~l~~l~~gl~~~~-----~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  194 (226)
T cd03248         120 VKEAAQKAHAHSFISELASGYDTEV-----GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY  194 (226)
T ss_pred             HHHHHHHcCcHHHHHhccccccchh-----hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            00011112356778888  675333     34578899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCee
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i  188 (607)
                      ++++ ++|+|+++|++. .+. .+|++++|++|++
T Consensus       195 ~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~i  226 (226)
T cd03248         195 DWPE-RRTVLVIAHRLS-TVE-RADQILVLDGGRI  226 (226)
T ss_pred             HHcC-CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence            9875 689999999975 454 4999999999874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-32  Score=286.50  Aligned_cols=192  Identities=28%  Similarity=0.373  Sum_probs=150.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|||||||||||++|+|+.++......+|+|.++|.++...       +++++|++|+..+++. ||+||+.+....+..
T Consensus        77 vG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~  155 (305)
T PRK14264         77 IGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGD  155 (305)
T ss_pred             ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhccc
Confidence            59999999999999999985210001289999999876421       2469999999988874 999999987543210


Q ss_pred             C---------CCC-HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 007344           74 E---------ILS-VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAF  143 (607)
Q Consensus        74 ~---------~~~-~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~  143 (607)
                      .         ... .+..++.+.++++.+++.+..++. .+..++.|||||||||+||++|+++|+||||||||+|||+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~  234 (305)
T PRK14264        156 INTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR-LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPI  234 (305)
T ss_pred             ccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH-hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence            0         011 223356688999999885322222 24567899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcce-eeecCCeeeeeCCCCC
Q 007344          144 QAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI-VLLTEGKLVYAGPARD  196 (607)
Q Consensus       144 ~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v-~lL~~G~iv~~G~~~~  196 (607)
                      ++..+.+.|+++++ ++|||+++|++. .+..++|++ ++|++|++++.|++++
T Consensus       235 ~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l~~G~i~~~g~~~~  286 (305)
T PRK14264        235 ATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFLTGGELVEYDDTDK  286 (305)
T ss_pred             HHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEecCCEEEEeCCHHH
Confidence            99999999999987 489999999964 677889996 5779999999987654

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-32  Score=281.20  Aligned_cols=190  Identities=22%  Similarity=0.291  Sum_probs=150.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC---C------ccceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS---N------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~---~------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +|+||||||||+++|+|+.++.+.-..+|+|.++|.+..   .      ..+.++|++|++.+++. ||+||+.+.....
T Consensus        48 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~  126 (265)
T PRK14252         48 IGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR  126 (265)
T ss_pred             ECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc
Confidence            599999999999999999875210013899999997653   1      12459999999998886 9999998865432


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                      .  .......++++++.++.+++.+...+ ..++.+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus       127 ~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~  203 (265)
T PRK14252        127 G--VKRRSILEERVENALRNAALWDEVKD-RLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEEL  203 (265)
T ss_pred             C--CChHHHHHHHHHHHHHHcCCchhhhH-HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence            1  11122334567888888887421111 22446788999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       152 L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |+++++ +.|||+++|++ .++.+.||++++|++|+++..|+.++
T Consensus       204 l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~~~  246 (265)
T PRK14252        204 ISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFGATDT  246 (265)
T ss_pred             HHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999976 68999999996 46778899999999999999987654

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=2.5e-32  Score=276.97  Aligned_cols=161  Identities=25%  Similarity=0.331  Sum_probs=137.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +|||||||||||++|+|..+++     +|+|.++|.       +++|++|+......+||+|++.+......    .   
T Consensus        31 ~G~NGsGKSTLlk~L~G~~~p~-----~G~i~~~g~-------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~----~---   91 (246)
T cd03237          31 LGPNGIGKTTFIKMLAGVLKPD-----EGDIEIELD-------TVSYKPQYIKADYEGTVRDLLSSITKDFY----T---   91 (246)
T ss_pred             ECCCCCCHHHHHHHHhCCCcCC-----CCeEEECCc-------eEEEecccccCCCCCCHHHHHHHHhhhcc----c---
Confidence            6999999999999999999887     899999985       68999999877778899999976533111    1   


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g  159 (607)
                      ....++++++.+||.+..+     +.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus        92 ~~~~~~~~l~~l~l~~~~~-----~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  166 (246)
T cd03237          92 HPYFKTEIAKPLQIEQILD-----REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE  166 (246)
T ss_pred             cHHHHHHHHHHcCCHHHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            1234678899999965443     45678999999999999999999999999999999999999999999999975 58


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEG  186 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G  186 (607)
                      +|||+++|++ ..+..+||++++|+++
T Consensus       167 ~tiiivsHd~-~~~~~~~d~i~~l~~~  192 (246)
T cd03237         167 KTAFVVEHDI-IMIDYLADRLIVFEGE  192 (246)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEcCC
Confidence            9999999996 4677889999999654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=1.4e-32  Score=270.43  Aligned_cols=149  Identities=29%  Similarity=0.428  Sum_probs=130.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc--CCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~--~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+|+|+|..  +++     +|+|.+||+++...      +.+++|++|++.+++..|+++++.       
T Consensus        32 ~G~nGsGKStLl~~l~G~~~~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~-------   99 (200)
T cd03217          32 MGPNGSGKSTLAKTIMGHPKYEVT-----EGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR-------   99 (200)
T ss_pred             ECCCCCCHHHHHHHHhCCCcCCCC-----ccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh-------
Confidence            5999999999999999994  455     89999999987542      124999999999898888887760       


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                                                      ...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus       100 --------------------------------~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L  147 (200)
T cd03217         100 --------------------------------YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI  147 (200)
T ss_pred             --------------------------------hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence                                            012469999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEEecCChhHHHh-hhcceeeecCCeeeeeCCC
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYF-KFDDIVLLTEGKLVYAGPA  194 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~-~~D~v~lL~~G~iv~~G~~  194 (607)
                      ++++++|+|+|+++|++. .+.. .+|++++|++|++++.|+.
T Consensus       148 ~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~  189 (200)
T cd03217         148 NKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK  189 (200)
T ss_pred             HHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH
Confidence            999888999999999975 5665 6999999999999999943

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2e-32  Score=295.44  Aligned_cols=185  Identities=29%  Similarity=0.422  Sum_probs=164.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccC-C
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL-P   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~   73 (607)
                      +|.||||||||+|+|+|.++|+     +|+|.+||++....      ..-|+.|.|+..++|+|||.||+.+....+. .
T Consensus        40 ~GeNGAGKSTLmKiLsGv~~p~-----~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~  114 (500)
T COG1129          40 LGENGAGKSTLMKILSGVYPPD-----SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRF  114 (500)
T ss_pred             ecCCCCCHHHHHHHHhCcccCC-----CceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCC
Confidence            6999999999999999999998     89999999987543      2349999999999999999999988776544 2


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                      ...+..+.++++.++|+.+|+....+     ..+.+||+||||.|.||+||..+++|++||||||.|+......+++.++
T Consensus       115 g~id~~~m~~~A~~~l~~lg~~~~~~-----~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir  189 (500)
T COG1129         115 GLIDRKAMRRRARELLARLGLDIDPD-----TLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIR  189 (500)
T ss_pred             CccCHHHHHHHHHHHHHHcCCCCChh-----hhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            34677788889999999999953233     4566799999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCC-CCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP-ARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~-~~~  196 (607)
                      +|+++|.+||.+||.. .+++++|||+.+|++|+.+..++ .++
T Consensus       190 ~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~~~~  232 (500)
T COG1129         190 RLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPTAAE  232 (500)
T ss_pred             HHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeecccccC
Confidence            9999999999999995 69999999999999999999888 354

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=1.7e-32  Score=269.19  Aligned_cols=162  Identities=28%  Similarity=0.377  Sum_probs=136.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+++|+|.++++     +|+|.++|.++...    .+.++|++|++.+++.+||.||+.+....+.    
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----  102 (198)
T TIGR01189        32 TGPNGIGKTTLLRILAGLLRPD-----SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----  102 (198)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----
Confidence            5999999999999999999886     89999999876432    2459999999988888999999988654321    


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      . +  +++++++++.+||.+..+     ..++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++
T Consensus       103 ~-~--~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  174 (198)
T TIGR01189       103 G-A--QRTIEDALAAVGLTGFED-----LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL  174 (198)
T ss_pred             C-c--HHHHHHHHHHcCCHHHhc-----CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence            1 1  345788999999975544     3567899999999999999999999999999999999999999999999998


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceee
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVL  182 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~l  182 (607)
                      ++|.|+|+++|++..   ..+++++.
T Consensus       175 ~~~~tii~~sH~~~~---~~~~~~~~  197 (198)
T TIGR01189       175 ARGGIVLLTTHQDLG---LVEARELR  197 (198)
T ss_pred             hCCCEEEEEEccccc---ccceEEee
Confidence            889999999999742   23466654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=1.1e-32  Score=266.13  Aligned_cols=139  Identities=36%  Similarity=0.566  Sum_probs=125.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||+|+|+|.++++     +|+|.++|.++...       .+.++|++|++.+++.+|++||+.+.      
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------  100 (178)
T cd03229          32 LGPSGSGKSTLLRCIAGLEEPD-----SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------  100 (178)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------
Confidence            5999999999999999999886     89999999876432       24599999999999889999987642      


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                                                          ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus       101 ------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~  144 (178)
T cd03229         101 ------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK  144 (178)
T ss_pred             ------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence                                                99999999999999999999999999999999999999999999


Q ss_pred             HHHhc-CCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344          154 QLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       154 ~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  187 (607)
                      +++++ |+|+|+++|++ ..+...+|++++|++|+
T Consensus       145 ~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         145 SLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK  178 (178)
T ss_pred             HHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence            99887 89999999996 46777899999999885

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=1.1e-32  Score=274.78  Aligned_cols=174  Identities=26%  Similarity=0.356  Sum_probs=140.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|..++.     +|+|.++|.++...     ++.++|++|++.+++ .||+||+.+...      
T Consensus        36 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------  103 (221)
T cd03244          36 VGRTGSGKSSLLLALFRLVELS-----SGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------  103 (221)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCC-----CCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC------
Confidence            5999999999999999999886     89999999886431     346999999998776 599999864321      


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccc------cccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADS------NVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~------~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ...    +++.+.++.+++.+..+.      ...+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.
T Consensus       104 ~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~  179 (221)
T cd03244         104 YSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ  179 (221)
T ss_pred             CCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence            111    234555666666433221      0113467899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCC
Q 007344          150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP  193 (607)
Q Consensus       150 ~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~  193 (607)
                      +.|+++++ +.|||+++|++. .+.. +|++++|++|++++.|+
T Consensus       180 ~~l~~~~~-~~tii~~sh~~~-~~~~-~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         180 KTIREAFK-DCTVLTIAHRLD-TIID-SDRILVLDKGRVVEFDS  220 (221)
T ss_pred             HHHHHhcC-CCEEEEEeCCHH-HHhh-CCEEEEEECCeEEecCC
Confidence            99999865 689999999975 4544 89999999999998875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=3.7e-33  Score=315.61  Aligned_cols=179  Identities=30%  Similarity=0.492  Sum_probs=151.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|.|+++++     +|+|.+||.+++..     +++++||+|++.+|. -||+||+.++..     .
T Consensus       361 VG~sGsGKSTl~~LL~r~~~~~-----~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~  429 (567)
T COG1132         361 VGPSGSGKSTLIKLLLRLYDPT-----SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----D  429 (567)
T ss_pred             ECCCCCCHHHHHHHHhccCCCC-----CCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----C
Confidence            5999999999999999999987     89999999998764     356999999999999 599999998742     2


Q ss_pred             CCHHHHHHHH-----HHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           76 LSVEERDEYV-----NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        76 ~~~~~~~~~v-----~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      .++++..+.+     .+.++.+  .+..||.+| +....||||||||++||||++++|++|+||||||+||+.+...+.+
T Consensus       430 at~eei~~a~k~a~~~d~I~~l--p~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~  506 (567)
T COG1132         430 ATDEEIEEALKLANAHEFIANL--PDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQD  506 (567)
T ss_pred             CCHHHHHHHHHHhChHHHHHhC--cccccceec-CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHH
Confidence            3444444333     3334444  445689998 4677899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .++++. +++|+++++|.++ .+.. +|+|++|++|++++.|+.++
T Consensus       507 ~l~~l~-~~rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~h~e  549 (567)
T COG1132         507 ALKKLL-KGRTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGTHEE  549 (567)
T ss_pred             HHHHHh-cCCEEEEEeccHh-HHHh-CCEEEEEECCEEEEecCHHH
Confidence            999887 5689999999974 4555 89999999999999999876

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=3.8e-33  Score=323.35  Aligned_cols=175  Identities=30%  Similarity=0.466  Sum_probs=146.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|+++|+     +|+|.+||.++++.     ++++|||+|++.+|+. |++||+.++.    + .
T Consensus       511 vG~sGsGKSTLlklL~gl~~p~-----~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~  579 (710)
T TIGR03796       511 VGGSGSGKSTIAKLVAGLYQPW-----SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD----P-T  579 (710)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC----C-C
Confidence            6999999999999999999987     89999999987653     3569999999999986 9999998742    1 2


Q ss_pred             CCHHHHHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++    +.++++..|+.       +-.||.+|+ ...+||||||||++|||+|+++|++|+||||||+||+.++..+
T Consensus       580 ~~~~~----i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i  654 (710)
T TIGR03796       580 IPDAD----LVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII  654 (710)
T ss_pred             CCHHH----HHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHH
Confidence            23333    33444444432       234677775 4678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|++   .++|+|+++|+++  ....+|+|++|++|+++..|+.++
T Consensus       655 ~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~  697 (710)
T TIGR03796       655 DDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEE  697 (710)
T ss_pred             HHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHH
Confidence            999986   4899999999974  445699999999999999998765

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=7.2e-33  Score=313.39  Aligned_cols=177  Identities=32%  Similarity=0.521  Sum_probs=151.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|..+|+     +|+|.+||.++++.     ++.++||+|++.+|+. |++||+.++..     .
T Consensus       372 vG~sGsGKSTL~~ll~g~~~p~-----~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~  440 (574)
T PRK11160        372 LGRTGCGKSTLLQLLTRAWDPQ-----QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----N  440 (574)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC-----c
Confidence            5999999999999999999987     89999999987653     2459999999999986 99999988531     1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCcc------ccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSC------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~------~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      .+    ++.+.+.++..++.+.      .||.+|+ ....||||||||++|||+|+++|++++|||||++||+.++..+.
T Consensus       441 ~~----~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~  515 (574)
T PRK11160        441 AS----DEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQIL  515 (574)
T ss_pred             cC----HHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            22    2346677777777543      4677765 47789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.|+++. +++|+|+++|+++ .+ ..+|++++|++|++++.|+.++
T Consensus       516 ~~l~~~~-~~~tviiitHr~~-~~-~~~d~i~~l~~G~i~~~g~~~~  559 (574)
T PRK11160        516 ELLAEHA-QNKTVLMITHRLT-GL-EQFDRICVMDNGQIIEQGTHQE  559 (574)
T ss_pred             HHHHHHc-CCCEEEEEecChh-HH-HhCCEEEEEeCCeEEEeCCHHH
Confidence            9999986 4899999999985 34 5699999999999999998655

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=7.9e-33  Score=311.37  Aligned_cols=180  Identities=29%  Similarity=0.472  Sum_probs=147.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|.++|+     +|+|.+||.++...     ++.++||+|++.+|+. |++||+.+...     .
T Consensus       350 vG~sGsGKSTL~~ll~g~~~~~-----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~  418 (544)
T TIGR01842       350 IGPSGSGKSTLARLIVGIWPPT-----SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-----N  418 (544)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC-----C
Confidence            5999999999999999999987     89999999987643     3469999999999986 99999985321     1


Q ss_pred             CCHHHHHH-----HHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           76 LSVEERDE-----YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        76 ~~~~~~~~-----~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      .+.++..+     ..++.++.+  .+-.||.+|+ ..+.||||||||++|||+|+++|++++|||||+|||+.++..+.+
T Consensus       419 ~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~  495 (544)
T TIGR01842       419 ADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALAN  495 (544)
T ss_pred             CCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHH
Confidence            23333221     123445544  1223566654 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .|+++..+|+|+|+++|+++  ....||++++|++|++++.|+.++
T Consensus       496 ~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~  539 (544)
T TIGR01842       496 AIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDE  539 (544)
T ss_pred             HHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHH
Confidence            99998767899999999975  456799999999999999998654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=1.7e-32  Score=263.64  Aligned_cols=135  Identities=34%  Similarity=0.601  Sum_probs=122.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|||||||||||++|+|..+++     +|+|.++|.++...     .++++|++|++.+++. ||+||+           
T Consensus        34 ~G~nGsGKStLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l-----------   96 (173)
T cd03246          34 IGPSGSGKSTLARLILGLLRPT-----SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI-----------   96 (173)
T ss_pred             ECCCCCCHHHHHHHHHhccCCC-----CCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHC-----------
Confidence            5999999999999999999887     89999999887542     3469999999988874 999987           


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                                                        ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus        97 ----------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~  142 (173)
T cd03246          97 ----------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL  142 (173)
T ss_pred             ----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHH
Confidence                                              9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEecCChhHHHhhhcceeeecCCee
Q 007344          156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       156 a~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i  188 (607)
                      +++|+|+|+++|++. .+ ..+|++++|++|++
T Consensus       143 ~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i  173 (173)
T cd03246         143 KAAGATRIVIAHRPE-TL-ASADRILVLEDGRV  173 (173)
T ss_pred             HhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence            888999999999975 45 57999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=2.9e-32  Score=269.35  Aligned_cols=163  Identities=25%  Similarity=0.361  Sum_probs=134.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|+.++.     +|+|.++|.++...     ++.++|++|++.+++. ||+||+.+..      .
T Consensus        40 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~  107 (207)
T cd03369          40 VGRTGAGKSTLILALFRFLEAE-----EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFD------E  107 (207)
T ss_pred             ECCCCCCHHHHHHHHhcccCCC-----CCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccC------C
Confidence            5999999999999999999886     89999999886432     2459999999988874 9999996531      1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      ...+    .+.+.++   +         +..++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++
T Consensus       108 ~~~~----~~~~~l~---~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  171 (207)
T cd03369         108 YSDE----EIYGALR---V---------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE  171 (207)
T ss_pred             CCHH----HHHHHhh---c---------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence            1221    2333333   2         2357789999999999999999999999999999999999999999999998


Q ss_pred             HhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCC
Q 007344          156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA  194 (607)
Q Consensus       156 a~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~  194 (607)
                      . +|+|+|+++|++. .+.. +|++++|++|+++..|++
T Consensus       172 ~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~  207 (207)
T cd03369         172 F-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP  207 (207)
T ss_pred             c-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence            5 4899999999975 4544 899999999999988763

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.4e-33  Score=264.69  Aligned_cols=185  Identities=29%  Similarity=0.418  Sum_probs=161.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|||||||||||.+++.+++.+     +|+|+++|.++...     .++++.+.|+..+...+||+|-+.|+.-... ..
T Consensus        33 IGPNGAGKSTLLS~~sRL~~~d-----~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS-qG  106 (252)
T COG4604          33 IGPNGAGKSTLLSMMSRLLKKD-----SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYS-QG  106 (252)
T ss_pred             ECCCCccHHHHHHHHHHhcccc-----CceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCccc-CC
Confidence            6999999999999999999987     89999999987653     3568999999999999999999999754332 22


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      ...++.+..+++.++.++|++..     +++..+||||||||.-||+.++++.+.++||||.++||-..+.++|+.|+++
T Consensus       107 Rlt~eD~~~I~~aieyl~L~~l~-----dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrl  181 (252)
T COG4604         107 RLTKEDRRIINEAIEYLHLEDLS-----DRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRL  181 (252)
T ss_pred             CCchHHHHHHHHHHHHhcccchH-----HHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHH
Confidence            23355667899999999996555     4567799999999999999999999999999999999999999999999999


Q ss_pred             Hh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCc
Q 007344          156 AQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE  197 (607)
Q Consensus       156 a~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~  197 (607)
                      ++ -|+||+++.||.+ ..-.+.|+|+-|++|+++..|++++.
T Consensus       182 a~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~ei  223 (252)
T COG4604         182 ADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEI  223 (252)
T ss_pred             HHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHh
Confidence            95 5999999999975 56677899999999999999999873

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=3.1e-32  Score=288.49  Aligned_cols=182  Identities=30%  Similarity=0.428  Sum_probs=162.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +|.||||||||+|+|.|.++|+     +|+|.++|++..-.      +..||+|.|+..+++++||.||+..+.......
T Consensus        36 LGENGAGKSTLm~iL~G~~~P~-----~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~  110 (501)
T COG3845          36 LGENGAGKSTLMKILFGLYQPD-----SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGG  110 (501)
T ss_pred             eccCCCCHHHHHHHHhCcccCC-----cceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccccc
Confidence            6999999999999999999998     89999999987532      234999999999999999999999987643233


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      ..+.++.+++++++.+++||.=--     +.++..||-||||||.|-++|.++|++|+|||||+-|-|..+.+++++|++
T Consensus       111 ~~~~~~~~~~i~~l~~~yGl~vdp-----~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~  185 (501)
T COG3845         111 LIDRRQARARIKELSERYGLPVDP-----DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRR  185 (501)
T ss_pred             ccCHHHHHHHHHHHHHHhCCCCCc-----cceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            456777888999999999995333     456678999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP  193 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~  193 (607)
                      ++++|+|||++||-. .++.+.|||+.+|.+||++...+
T Consensus       186 l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         186 LAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             HHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence            999999999999995 68999999999999999987665

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=2.8e-32  Score=277.45  Aligned_cols=168  Identities=30%  Similarity=0.474  Sum_probs=141.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCC--CHHHHHHHHHHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQL--TVRETLSLAAELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~l--TV~E~l~~~~~~~~~~~~~~   78 (607)
                      +||||||||||||+|+|+.+++     +|+|.++|.      ..++|++|++.+++.+  |+.+++.+.     + ... 
T Consensus        36 ~G~NGsGKSTLl~~i~Gl~~p~-----~G~i~~~~~------~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~-~~~-   97 (251)
T PRK09544         36 LGPNGAGKSTLVRVVLGLVAPD-----EGVIKRNGK------LRIGYVPQKLYLDTTLPLTVNRFLRLR-----P-GTK-   97 (251)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCc------cCEEEeccccccccccChhHHHHHhcc-----c-ccc-
Confidence            5999999999999999999887     899999872      3599999998777753  777776431     1 111 


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344           79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~  158 (607)
                         ++++.++++.+||.+..+     ..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus        98 ---~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~  169 (251)
T PRK09544         98 ---KEDILPALKRVQAGHLID-----APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRE  169 (251)
T ss_pred             ---HHHHHHHHHHcCChHHHh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh
Confidence               235778999999965554     356789999999999999999999999999999999999999999999999865


Q ss_pred             -CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          159 -GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       159 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                       |+|||+++|++. .+...+|++++|++ +++..|++++
T Consensus       170 ~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~  206 (251)
T PRK09544        170 LDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEV  206 (251)
T ss_pred             cCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHH
Confidence             899999999964 77788999999964 7888887654

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=1e-32  Score=319.65  Aligned_cols=177  Identities=31%  Similarity=0.440  Sum_probs=147.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|+++|+     +|+|.+||.++++.     ++++|||+|++.+|+. |++||+.++..   + .
T Consensus       506 vG~SGsGKSTLlklL~gl~~p~-----~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~  575 (708)
T TIGR01193       506 VGMSGSGKSTLAKLLVGFFQAR-----SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---E-N  575 (708)
T ss_pred             ECCCCCCHHHHHHHHhccCCCC-----CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC---C-C
Confidence            5999999999999999999987     89999999987553     3469999999999987 99999988632   1 2


Q ss_pred             CCHHHHHHHHHHHHHHcCC-------CccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++    +.++++..|+       .+-.||.+|+ ...+||||||||++|||||+++|++|+||||||+||+.++..+
T Consensus       576 ~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i  650 (708)
T TIGR01193       576 VSQDE----IWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI  650 (708)
T ss_pred             CCHHH----HHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH
Confidence            23333    3334444333       2345787876 4678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++  +|+|+|+++|+++  ....+|+|++|++|++++.|+.++
T Consensus       651 ~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~  694 (708)
T TIGR01193       651 VNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDE  694 (708)
T ss_pred             HHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHH
Confidence            9999985  5799999999974  456799999999999999998765

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=3.6e-32  Score=268.79  Aligned_cols=165  Identities=30%  Similarity=0.379  Sum_probs=139.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC--ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~--~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~   78 (607)
                      +||||||||||+++|+|..+++     +|+|.++|.+...  .++.++|++|++.+++.+||+||+.+....+.   .. 
T Consensus        34 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~-  104 (207)
T PRK13539         34 TGPNGSGKTTLLRLIAGLLPPA-----AGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE-  104 (207)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc-
Confidence            6999999999999999999876     8999999987532  23458999999988889999999988654321   11 


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344           79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~  158 (607)
                         +++++++++.+||.+..+     ..++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|++++++
T Consensus       105 ---~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  176 (207)
T PRK13539        105 ---ELDIAAALEAVGLAPLAH-----LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ  176 (207)
T ss_pred             ---HHHHHHHHHHcCCHHHHc-----CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence               234788999999965443     456789999999999999999999999999999999999999999999999888


Q ss_pred             CCeEEEEecCChhHHHhhhcceeeecC
Q 007344          159 GHTVICSIHQPRGSVYFKFDDIVLLTE  185 (607)
Q Consensus       159 g~tvi~~~H~p~~~i~~~~D~v~lL~~  185 (607)
                      |+|||+++|++. ++..  |+++.+..
T Consensus       177 ~~tiii~sH~~~-~~~~--~~~~~~~~  200 (207)
T PRK13539        177 GGIVIAATHIPL-GLPG--ARELDLGP  200 (207)
T ss_pred             CCEEEEEeCCch-hhcc--CcEEeecC
Confidence            999999999964 4444  88887743

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=6.4e-32  Score=294.46  Aligned_cols=174  Identities=23%  Similarity=0.319  Sum_probs=147.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +|||||||||||++|+|+.+|+     +|+|.++|.+.        ++.+...+.+.+||+||+.+.....   ..+.++
T Consensus        56 iGpNGSGKSTLLkiLaGLl~P~-----sGeI~I~G~~~--------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e  119 (549)
T PRK13545         56 IGLNGSGKSTLSNLIAGVTMPN-----KGTVDIKGSAA--------LIAISSGLNGQLTGIENIELKGLMM---GLTKEK  119 (549)
T ss_pred             EcCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEee--------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHH
Confidence            5999999999999999999887     89999999752        2223445667789999998865432   133455


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH  160 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~  160 (607)
                      ..++++++++.+||.+..+     +.++.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+
T Consensus       120 ~~e~i~elLe~lgL~~~ld-----~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~  194 (549)
T PRK13545        120 IKEIIPEIIEFADIGKFIY-----QPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGK  194 (549)
T ss_pred             HHHHHHHHHHHcCChhHhh-----CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCC
Confidence            5567889999999965544     35678999999999999999999999999999999999999999999999988899


Q ss_pred             eEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          161 TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       161 tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |||+++|++. .+...||++++|++|++++.|++++
T Consensus       195 TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~e  229 (549)
T PRK13545        195 TIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKE  229 (549)
T ss_pred             EEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence            9999999964 7788899999999999999998765

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.98  E-value=3.9e-32  Score=279.84  Aligned_cols=184  Identities=28%  Similarity=0.430  Sum_probs=165.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~   70 (607)
                      +|.||||||||=.+|.+++++      +|+|.++|+++...        ++++-.|+||+  .+-|.+||.|-+.-+...
T Consensus       319 VGESGSGKsTlG~allrL~~s------~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~v  392 (534)
T COG4172         319 VGESGSGKSTLGLALLRLIPS------QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRV  392 (534)
T ss_pred             EecCCCCcchHHHHHHhhcCc------CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhh
Confidence            699999999999999999876      59999999987642        34589999998  689999999999988877


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      +.| ..+..++++++.+.|+++||.    ....++++++.|||||||++||||++.+|++++||||||.||-.-+.+|++
T Consensus       393 h~~-~ls~~eR~~rv~~aL~EVGLD----p~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~  467 (534)
T COG4172         393 HEP-KLSAAERDQRVIEALEEVGLD----PATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD  467 (534)
T ss_pred             cCC-CCCHHHHHHHHHHHHHHcCCC----hhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH
Confidence            654 467889999999999999994    444578999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +|++|. +.|.+-++++||. .-+..+||+|++|++|++|+.|++++
T Consensus       468 LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~GkiVE~G~~~~  513 (534)
T COG4172         468 LLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEA  513 (534)
T ss_pred             HHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEeCCEEeeeCCHHH
Confidence            999997 6789999999995 57889999999999999999999766

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.98  E-value=2.2e-32  Score=263.96  Aligned_cols=141  Identities=33%  Similarity=0.599  Sum_probs=125.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +|||||||||||++|+|..++.     +|+|.++|.++...    ++.++|++|++.+++ .|++||+            
T Consensus        34 ~G~nGsGKStLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------   95 (178)
T cd03247          34 LGRSGSGKSTLLQLLTGDLKPQ-----QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL------------   95 (178)
T ss_pred             ECCCCCCHHHHHHHHhccCCCC-----CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh------------
Confidence            5999999999999999999886     89999999876421    345999999998876 6999986            


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                                                    ++.||||||||++||++|+.+|++++|||||+|||+.++..+++.|++++
T Consensus        96 ------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~  145 (178)
T cd03247          96 ------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL  145 (178)
T ss_pred             ------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence                                          34699999999999999999999999999999999999999999999996


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                       ++.|||+++|++. .+. .+|++++|++|++++.|
T Consensus       146 -~~~tii~~sh~~~-~~~-~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         146 -KDKTLIWITHHLT-GIE-HMDKILFLENGKIIMQG  178 (178)
T ss_pred             -CCCEEEEEecCHH-HHH-hCCEEEEEECCEEEecC
Confidence             5899999999975 454 69999999999998754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.98  E-value=2e-32  Score=281.63  Aligned_cols=175  Identities=25%  Similarity=0.347  Sum_probs=144.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|+++ .     +|+|.++|.++...     +++++||+|++.+|+. ||+||+.....      
T Consensus        36 vG~nGsGKSTLl~~L~gl~~-~-----~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------  102 (275)
T cd03289          36 LGRTGSGKSTLLSAFLRLLN-T-----EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK------  102 (275)
T ss_pred             ECCCCCCHHHHHHHHhhhcC-C-----CcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccC------
Confidence            69999999999999999986 4     69999999987542     3469999999999985 99999964211      


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccc-------cccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADS-------NVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~-------~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.    +.+.+.++.+||.+..+.       .+++ ....||||||||++|||+|+.+|+|++|||||+|||+.+...+
T Consensus       103 ~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l  177 (275)
T cd03289         103 WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI  177 (275)
T ss_pred             CCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHH
Confidence            122    345677788888644333       2222 3456999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++. +++|||+++|++. .+. .|||+++|++|++++.|++++
T Consensus       178 ~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~G~i~~~g~~~~  222 (275)
T cd03289         178 RKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEENKVRQYDSIQK  222 (275)
T ss_pred             HHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecCCeEeecCCHHH
Confidence            99999875 4899999999974 555 499999999999999998876

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.98  E-value=1.8e-32  Score=311.24  Aligned_cols=177  Identities=28%  Similarity=0.461  Sum_probs=146.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+|+|+|+.+|+     +|+|.+||.++++.     +++++||+|++.+|+. |++||+.++.    + .
T Consensus       367 vG~sGsGKSTLl~lL~gl~~p~-----~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~-~  435 (588)
T PRK13657        367 VGPTGAGKSTLINLLQRVFDPQ-----SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR----P-D  435 (588)
T ss_pred             ECCCCCCHHHHHHHHhcCcCCC-----CCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCC----C-C
Confidence            5999999999999999999987     89999999988653     2469999999999986 9999998752    1 2


Q ss_pred             CCHHHHHHHHHHHHHHcCC-------CccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++    +.++++..|+       .+-.||.+|+ ..+.||||||||++|||+|+++|++++||||||+||+.++..+
T Consensus       436 ~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i  510 (588)
T PRK13657        436 ATDEE----MRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKV  510 (588)
T ss_pred             CCHHH----HHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence            23333    3334444443       2334677765 4678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++. +++|+|++||+++  ..+.+|++++|++|+++..|+.++
T Consensus       511 ~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~  555 (588)
T PRK13657        511 KAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDE  555 (588)
T ss_pred             HHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999875 4799999999974  457799999999999999987654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.98  E-value=2.3e-32  Score=303.95  Aligned_cols=174  Identities=22%  Similarity=0.281  Sum_probs=146.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCC--C------CCCCHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLF--F------SQLTVRETLSLA   67 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l--~------~~lTV~E~l~~~   67 (607)
                      +||||||||||||+|+|+++++     +|+|.++|.+....     .++++|++|++.+  +      ..+||+|++.+.
T Consensus        35 iG~nGsGKSTLl~~l~G~~~p~-----~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~  109 (490)
T PRK10938         35 VGANGSGKSALARALAGELPLL-----SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE  109 (490)
T ss_pred             ECCCCCCHHHHHHHHhccCCCC-----CceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc
Confidence            6999999999999999999887     89999998765321     2349999998642  1      146888876531


Q ss_pred             HHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344           68 AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        68 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~  147 (607)
                                 .+.+++++++++.+||.+..+     +.++.|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus       110 -----------~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~  173 (490)
T PRK10938        110 -----------VKDPARCEQLAQQFGITALLD-----RRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ  173 (490)
T ss_pred             -----------hhHHHHHHHHHHHcCCHhhhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence                       123456889999999965544     4567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       148 i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.+.|++++++|+|||+++|++. .+...||++++|++|+++..|++++
T Consensus       174 l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~  221 (490)
T PRK10938        174 LAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAETGEREE  221 (490)
T ss_pred             HHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEeCCHHH
Confidence            99999999888999999999964 6788899999999999999987654

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.98  E-value=1.2e-32  Score=318.26  Aligned_cols=177  Identities=28%  Similarity=0.495  Sum_probs=148.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+|+|+|+++|+     +|+|.+||.++++.     ++.++||+|++.+|+. |++||+.+...     .
T Consensus       497 vG~sGsGKSTLlklL~gl~~p~-----~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~  565 (694)
T TIGR03375       497 IGRIGSGKSTLLKLLLGLYQPT-----EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----Y  565 (694)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC-----C
Confidence            5999999999999999999987     89999999988653     3469999999999986 99999987521     2


Q ss_pred             CCHHHHHHHHHHHHHHcCC-------CccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++    +.++++..|+       .+-.||.+|+ ....||||||||++|||+|+++|++++||||||+||+.++..+
T Consensus       566 ~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i  640 (694)
T TIGR03375       566 ADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERF  640 (694)
T ss_pred             CCHHH----HHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence            33333    3334444433       3345788876 4678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++.+ ++|+|+++|+++  ....||+|++|++|++++.|+.++
T Consensus       641 ~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~e  685 (694)
T TIGR03375       641 KDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQ  685 (694)
T ss_pred             HHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHH
Confidence            999999864 799999999974  456799999999999999998765

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.98  E-value=1.3e-32  Score=318.20  Aligned_cols=175  Identities=30%  Similarity=0.429  Sum_probs=144.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|.++|+     +|+|.+||.++++.     +++++||+|++.+|+. |++||+.++..     .
T Consensus       513 vG~SGsGKSTLl~lL~gl~~p~-----~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~  581 (711)
T TIGR00958       513 VGPSGSGKSTVAALLQNLYQPT-----GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT-----D  581 (711)
T ss_pred             ECCCCCCHHHHHHHHHhccCCC-----CCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC-----C
Confidence            5999999999999999999987     89999999998653     3469999999999986 99999987531     1


Q ss_pred             CCHHHHHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.+    .+.++++..++.       +-.||.+|+ ....||||||||++|||+|+++|+|++||||||+||+.++..+
T Consensus       582 ~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i  656 (711)
T TIGR00958       582 TPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLL  656 (711)
T ss_pred             CCHH----HHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHH
Confidence            2222    344555555543       335777775 4678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+ ..  ..+++|+|+++|+++  ....+|+|++|++|++++.|+.++
T Consensus       657 ~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~e  699 (711)
T TIGR00958       657 QE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQ  699 (711)
T ss_pred             HH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHH
Confidence            88 22  246899999999974  456699999999999999998765

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.98  E-value=2.5e-32  Score=309.04  Aligned_cols=178  Identities=27%  Similarity=0.407  Sum_probs=148.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+|+|+|+.+|+     +|+|.+||.++++.     +++++||+|++.+|+. |++|||.++..    ..
T Consensus       364 vG~sGsGKSTLl~lL~gl~~~~-----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~  433 (571)
T TIGR02203       364 VGRSGSGKSTLVNLIPRFYEPD-----SGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT----EQ  433 (571)
T ss_pred             ECCCCCCHHHHHHHHHhccCCC-----CCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC----CC
Confidence            5999999999999999999987     89999999987643     2469999999999987 99999987531    12


Q ss_pred             CCHHHHHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.+    +++++++.+|+.       +-.||.+|+. .+.||||||||++|||+++++|++++||||||+||+.+++.+
T Consensus       434 ~~~~----~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i  508 (571)
T TIGR02203       434 ADRA----EIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV  508 (571)
T ss_pred             CCHH----HHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence            2333    345555555543       3346777764 678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++.|++++ +++|+|++||++  .....||+|++|++|+++..|+.++
T Consensus       509 ~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~  553 (571)
T TIGR02203       509 QAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNE  553 (571)
T ss_pred             HHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHH
Confidence            99999885 479999999997  4567799999999999999887655

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.6e-32  Score=302.01  Aligned_cols=179  Identities=32%  Similarity=0.492  Sum_probs=153.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||+||||+.++|-.++.|+     +|+|.+||.|+++.     +++||+|.|+|.+|.. ||+||+.|+..     .
T Consensus       500 VGPSGsGKSTiasLL~rfY~Pt-----sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~  568 (716)
T KOG0058|consen  500 VGPSGSGKSTIASLLLRFYDPT-----SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----N  568 (716)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCC-----CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----C
Confidence            6999999999999999999998     89999999998764     3569999999999997 99999999864     2


Q ss_pred             CCHHHHHHHH-----HHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           76 LSVEERDEYV-----NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        76 ~~~~~~~~~v-----~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      .+.++..+.+     .+.+  .++.+-.||.+|+ +...||||||||++|||||++||.||||||.||.||+++...+-+
T Consensus       569 ~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~  645 (716)
T KOG0058|consen  569 ATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQE  645 (716)
T ss_pred             CCHHHHHHHHHHhChHHHH--HhCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHH
Confidence            3444443322     2233  3677889999997 567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .|.++.+ ++|||++.|..+  ..+.+|+|+++++|++++.|+.++
T Consensus       646 aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~e  688 (716)
T KOG0058|consen  646 ALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDE  688 (716)
T ss_pred             HHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcCCeEEecccHHH
Confidence            9998876 499999999853  456689999999999999997655

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=8.7e-33  Score=294.68  Aligned_cols=177  Identities=33%  Similarity=0.500  Sum_probs=150.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc-----ceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA-----YKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~-----~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||++.|+|-.+++     +|+|.+||.++...+     ..+++++|...+|.+ |+++||..+..     +
T Consensus       370 lG~SGsGKSTllqLl~~~~~~~-----~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~-----~  438 (573)
T COG4987         370 LGRSGSGKSTLLQLLAGAWDPQ-----QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANP-----D  438 (573)
T ss_pred             ECCCCCCHHHHHHHHHhccCCC-----CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCC-----C
Confidence            6999999999999999999998     899999998875543     359999999999987 99999988642     2


Q ss_pred             CCHHHHHHHHHHHHHHcCCCcc-------ccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSC-------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.+    .+.++++++||++.       .||.+|+ ..+.||||||||++|||+|++|.++++|||||.|||+.+++++
T Consensus       439 AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~v  513 (573)
T COG4987         439 ASDE----ELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQV  513 (573)
T ss_pred             CCHH----HHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHH
Confidence            3333    35567777777643       3445654 5789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++.|.+-++ |+|+|++||+..  -.+.||+|++|++|++++.|..++
T Consensus       514 L~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~  558 (573)
T COG4987         514 LALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAE  558 (573)
T ss_pred             HHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHh
Confidence            999988765 899999999965  346689999999999999998876

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.1e-32  Score=294.07  Aligned_cols=176  Identities=27%  Similarity=0.431  Sum_probs=147.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+|||||||++|+|.+... .     +|+|.+||+++++.     ++.|||||||..+|.+ ||.+|+.++..     .
T Consensus       384 vG~nGsGKSTilr~LlrF~d-~-----sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----s  451 (591)
T KOG0057|consen  384 VGSNGSGKSTILRLLLRFFD-Y-----SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----S  451 (591)
T ss_pred             ECCCCCCHHHHHHHHHHHhc-c-----CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC-----C
Confidence            59999999999999999987 4     79999999998654     2449999999999987 99999999742     2


Q ss_pred             CCHHHHHHHHHHHHHHcC-------CCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLG-------LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++    |.++.+..|       +.+-..|.+|+ +...|||||||||+|||+++++|+|+++|||||.||+.+..++
T Consensus       452 as~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGe-rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i  526 (591)
T KOG0057|consen  452 ASDEE----VVEACKRAGLHDVISRLPDGYQTLVGE-RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREI  526 (591)
T ss_pred             cCHHH----HHHHHHHcCcHHHHHhccccchhhHhh-cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHH
Confidence            33333    333333333       34556677876 5678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++.+.+ ...|+|+|++.|+.  .....||+|++|++|++...|+.++
T Consensus       527 ~~~i~~-~~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~e  571 (591)
T KOG0057|consen  527 LDMIMD-VMSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSE  571 (591)
T ss_pred             HHHHHH-hcCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHH
Confidence            999999 45689999999985  4567799999999999999998776

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.98  E-value=1e-31  Score=267.57  Aligned_cols=169  Identities=22%  Similarity=0.399  Sum_probs=133.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---------ccceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +|||||||||||++|+|+.+++     +|+|.++|.+...         .++.++|++|++.++ ..|++||+.+...  
T Consensus        33 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~--  104 (218)
T cd03290          33 VGQVGCGKSSLLLAILGEMQTL-----EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSP--  104 (218)
T ss_pred             ECCCCCCHHHHHHHHhccCCCC-----CCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCc--
Confidence            5999999999999999999876     8999999986532         124599999999887 4699999977431  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccc------cccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADS------NVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQA  145 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~------~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~  145 (607)
                          ...+    ...++++.++|.+..+.      ...+..+..|||||||||+||++|+.+|++++|||||+|||+.++
T Consensus       105 ----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~  176 (218)
T cd03290         105 ----FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLS  176 (218)
T ss_pred             ----CCHH----HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHH
Confidence                1111    23345555665432211      111345789999999999999999999999999999999999999


Q ss_pred             HHHHH--HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344          146 EKVME--ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       146 ~~i~~--~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  187 (607)
                      ..+++  +++.+.++|.|+|+++|++. .+ ..+|++++|++|+
T Consensus       177 ~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~  218 (218)
T cd03290         177 DHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS  218 (218)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence            99998  67777777899999999975 45 4699999999884

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.98  E-value=1.4e-31  Score=263.21  Aligned_cols=161  Identities=22%  Similarity=0.273  Sum_probs=135.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|+++...    .++++|++|+..+++.+||+||+.+.....     
T Consensus        33 ~G~nGsGKSTLl~~i~G~~~~~-----~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~-----  102 (200)
T PRK13540         33 KGSNGAGKTTLLKLIAGLLNPE-----KGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS-----  102 (200)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC-----
Confidence            5999999999999999999887     89999999876432    245999999988888999999998864321     


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                       ..  +..++++++.+++.+..+     ..+..||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       103 -~~--~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~  174 (200)
T PRK13540        103 -PG--AVGITELCRLFSLEHLID-----YPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR  174 (200)
T ss_pred             -cc--hHHHHHHHHHcCCchhhh-----CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence             11  236788999999965444     3456899999999999999999999999999999999999999999999998


Q ss_pred             hcCCeEEEEecCChhHHHhhhccee
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIV  181 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~  181 (607)
                      ++|.|||+++|++.  ....+|...
T Consensus       175 ~~~~tiii~sh~~~--~~~~~d~~~  197 (200)
T PRK13540        175 AKGGAVLLTSHQDL--PLNKADYEE  197 (200)
T ss_pred             HcCCEEEEEeCCch--hccccchhh
Confidence            88999999999964  334466543

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.97  E-value=7.7e-32  Score=265.66  Aligned_cols=160  Identities=31%  Similarity=0.456  Sum_probs=127.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|        +++|++|++.+++ .||+||+.+....      ..+ 
T Consensus        37 ~G~nG~GKSTLl~~i~G~~~~~-----~G~i~~~g--------~i~~~~q~~~l~~-~t~~enl~~~~~~------~~~-   95 (204)
T cd03250          37 VGPVGSGKSSLLSALLGELEKL-----SGSVSVPG--------SIAYVSQEPWIQN-GTIRENILFGKPF------DEE-   95 (204)
T ss_pred             ECCCCCCHHHHHHHHhCcCCCC-----CCeEEEcC--------EEEEEecCchhcc-CcHHHHhccCCCc------CHH-
Confidence            5999999999999999999887     89999998        6999999998885 6999999874321      111 


Q ss_pred             HHHHHHHHHHHcCCCcc-------ccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HH
Q 007344           81 RDEYVNSLLFKLGLVSC-------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME-AL  152 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~-~L  152 (607)
                         ...+.++.+++.+.       .++.. +...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+ ++
T Consensus        96 ---~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll  171 (204)
T cd03250          96 ---RYEKVIKACALEPDLEILPDGDLTEI-GEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCI  171 (204)
T ss_pred             ---HHHHHHHHcCcHHHHHhccCccccee-cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence               12223333333211       11222 34578899999999999999999999999999999999999999998 56


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  187 (607)
                      ++++++|+|||+++|++. .+.. +|++++|++|+
T Consensus       172 ~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~  204 (204)
T cd03250         172 LGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR  204 (204)
T ss_pred             HHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence            777667899999999975 5555 99999999885

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.97  E-value=5.6e-32  Score=276.29  Aligned_cols=176  Identities=20%  Similarity=0.285  Sum_probs=138.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+++|+|+.++.     +|+|.++|.++...     ++.++|++|++.+++. |++||+....      .
T Consensus        53 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~------~  120 (257)
T cd03288          53 CGRTGSGKSSLSLAFFRMVDIF-----DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPEC------K  120 (257)
T ss_pred             ECCCCCCHHHHHHHHHcccCCC-----CCeEEECCEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCC------C
Confidence            5999999999999999999876     89999999987542     2459999999988874 9999975321      0


Q ss_pred             CCHHHHHH-----HHHHHHHHc--CCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDE-----YVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      ...+....     .+++.++.+  |+.    +.+ +...+.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus       121 ~~~~~~~~~l~~~~l~~~~~~~~~~l~----~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l  195 (257)
T cd03288         121 CTDDRLWEALEIAQLKNMVKSLPGGLD----AVV-TEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL  195 (257)
T ss_pred             CCHHHHHHHHHHhCcHHHHhhcccccC----cEe-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence            11111111     123334433  332    222 235678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.++++. ++.|||+++|++. .+.. +|++++|++|+++..|++++
T Consensus       196 ~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~l~~G~i~~~g~~~~  240 (257)
T cd03288         196 QKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLVLSRGILVECDTPEN  240 (257)
T ss_pred             HHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEEEECCEEEEeCCHHH
Confidence            99999875 4899999999976 4554 99999999999999887654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.97  E-value=4.3e-32  Score=313.68  Aligned_cols=177  Identities=29%  Similarity=0.488  Sum_probs=146.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+|+|+|+++|+     +|+|.+||.++++.     ++.++||+|++.+|+. |++||+.+..    + .
T Consensus       489 vG~sGsGKSTL~~ll~g~~~p~-----~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~-~  557 (694)
T TIGR01846       489 VGPSGSGKSTLTKLLQRLYTPQ-----HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN----P-G  557 (694)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC----C-C
Confidence            5999999999999999999987     89999999988653     3469999999999986 9999998742    1 2


Q ss_pred             CCHHHHHHHHHHHHHHcCC-------CccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++    +.+.++..++       .+-.||.+++ ...+||||||||++|||+|+++|++|+|||||+|||+.++..+
T Consensus       558 ~~~~~----i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i  632 (694)
T TIGR01846       558 APFEH----VIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALI  632 (694)
T ss_pred             CCHHH----HHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHH
Confidence            23333    2333333332       2234677765 4678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++. +++|+|+++|+++ .+ ..||++++|++|++++.|+.++
T Consensus       633 ~~~l~~~~-~~~t~i~itH~~~-~~-~~~d~ii~l~~G~i~~~g~~~~  677 (694)
T TIGR01846       633 MRNMREIC-RGRTVIIIAHRLS-TV-RACDRIIVLEKGQIAESGRHEE  677 (694)
T ss_pred             HHHHHHHh-CCCEEEEEeCChH-HH-HhCCEEEEEeCCEEEEeCCHHH
Confidence            99999985 5799999999974 34 5699999999999999998655

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.1e-31  Score=296.28  Aligned_cols=185  Identities=18%  Similarity=0.285  Sum_probs=150.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCC---CCCCCCCHHHHHHHHH--H
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED---LFFSQLTVRETLSLAA--E   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~---~l~~~lTV~E~l~~~~--~   69 (607)
                      +||||||||||+|+|+|..+++     +|+|.++|+++...      ++.++|++|+.   .+++.+|+.+|..+..  .
T Consensus       280 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  354 (491)
T PRK10982        280 AGLVGAKRTDIVETLFGIREKS-----AGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN  354 (491)
T ss_pred             ecCCCCCHHHHHHHHcCCCcCC-----ccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhh
Confidence            6999999999999999999887     89999999887542      23489999985   4688888887743221  0


Q ss_pred             c-cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344           70 L-QLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        70 ~-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~  147 (607)
                      . ......+..+.++.++++++.+++. +..     ++.+++|||||||||+||++|+.+|+||||||||+|||+.++..
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~  429 (491)
T PRK10982        355 YKNKVGLLDNSRMKSDTQWVIDSMRVKTPGH-----RTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE  429 (491)
T ss_pred             hcccccccCcHHHHHHHHHHHHhcCccCCCc-----ccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHH
Confidence            0 1001112234456788999999984 222     45677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       148 i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++.|++++++|+|||++||++ ..+..+||++++|++|+++..++.++
T Consensus       430 ~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~~~~~~  477 (491)
T PRK10982        430 IYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAGIVDTKT  477 (491)
T ss_pred             HHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEEEEcccc
Confidence            9999999998899999999996 46788999999999999998776543

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.97  E-value=1.1e-31  Score=303.62  Aligned_cols=177  Identities=26%  Similarity=0.447  Sum_probs=146.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|.++|+     +|+|.+||.++...     ++.++||+|++.+|+. |++||+.++..     .
T Consensus       347 vG~sGsGKSTLl~ll~g~~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~  415 (569)
T PRK10789        347 CGPTGSGKSTLLSLIQRHFDVS-----EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP-----D  415 (569)
T ss_pred             ECCCCCCHHHHHHHHhcccCCC-----CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC-----C
Confidence            5999999999999999999987     89999999987543     3469999999999986 99999987521     2


Q ss_pred             CCHHHHHHHHHHHHHHcCC-------CccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++    +++.++..++       .+-.||.+|+ ....||||||||++|||+|+++|++++|||||+|||+.++..+
T Consensus       416 ~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i  490 (569)
T PRK10789        416 ATQQE----IEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI  490 (569)
T ss_pred             CCHHH----HHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHH
Confidence            23332    3334444443       3344677765 4678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++. +|+|+|+++|+++  ....+|++++|++|+++..|+.++
T Consensus       491 ~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~  535 (569)
T PRK10789        491 LHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQ  535 (569)
T ss_pred             HHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHH
Confidence            99999975 5899999999974  345699999999999999998654

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.97  E-value=1e-31  Score=259.89  Aligned_cols=144  Identities=41%  Similarity=0.626  Sum_probs=123.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|+.+++     +|+|.++|.++...     .+.++|++|                         
T Consensus        31 ~G~nGsGKStLl~~i~G~~~~~-----~G~v~~~g~~~~~~~~~~~~~~i~~~~q-------------------------   80 (180)
T cd03214          31 LGPNGAGKSTLLKTLAGLLKPS-----SGEILLDGKDLASLSPKELARKIAYVPQ-------------------------   80 (180)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEECCcCCHHHHHHHHhHHHH-------------------------
Confidence            5999999999999999999887     89999999887432     124677777                         


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                                  +++.+||.+..+     +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus        81 ------------~l~~~gl~~~~~-----~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~  143 (180)
T cd03214          81 ------------ALELLGLAHLAD-----RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL  143 (180)
T ss_pred             ------------HHHHcCCHhHhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence                        566677754333     356789999999999999999999999999999999999999999999999


Q ss_pred             Hhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          156 AQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       156 a~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      +++ |.|+|+++|++. .+...+|++++|++|++++.|
T Consensus       144 ~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~  180 (180)
T cd03214         144 ARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG  180 (180)
T ss_pred             HHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence            876 899999999964 677889999999999998654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=4.1e-32  Score=250.22  Aligned_cols=173  Identities=25%  Similarity=0.398  Sum_probs=150.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      .||||||||||+|+++.+.+|+     +|++++.|++.+..     +.+++||.|.+.+|+. ||++||.|..++|..+.
T Consensus        35 tGPSG~GKStllk~va~Lisp~-----~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr~  108 (223)
T COG4619          35 TGPSGCGKSTLLKIVASLISPT-----SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRP  108 (223)
T ss_pred             eCCCCccHHHHHHHHHhccCCC-----CceEEEcCccccccChHHHHHHHHHHHcCcccccc-chhhccccchHHhccCC
Confidence            5999999999999999999998     89999999998764     3469999999999997 99999999887764221


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                           ..+...+.|++++|.+    .+.++.+..||||||||++|+|.|..-|+||+||||||.||+.+++.|-+++.++
T Consensus       109 -----dr~aa~~llar~~l~~----~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~  179 (223)
T COG4619         109 -----DRAAALDLLARFALPD----SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY  179 (223)
T ss_pred             -----ChHHHHHHHHHcCCch----hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHH
Confidence                 2345678899999953    4445678899999999999999999999999999999999999999999999998


Q ss_pred             H-hcCCeEEEEecCChhHHHhhhcceeeecCCeee
Q 007344          156 A-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV  189 (607)
Q Consensus       156 a-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv  189 (607)
                      . ++.+.++.+||++. +..+.+|+++-+..|++-
T Consensus       180 v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~~  213 (223)
T COG4619         180 VREQNVAVLWITHDKD-QAIRHADKVITLQPGHAG  213 (223)
T ss_pred             hhhhceEEEEEecChH-HHhhhhheEEEeccCccc
Confidence            6 77899999999975 556779999999998763

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.97  E-value=2e-31  Score=302.20  Aligned_cols=179  Identities=28%  Similarity=0.436  Sum_probs=144.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|..+|+     +|+|.+||.++.+.     ++.++||+|++.+++ .|++||+.++..     .
T Consensus       367 vG~sGsGKSTL~~ll~g~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~-----~  435 (585)
T TIGR01192       367 VGPTGAGKTTLINLLQRVYDPT-----VGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGRE-----G  435 (585)
T ss_pred             ECCCCCCHHHHHHHHccCCCCC-----CCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCCC-----C
Confidence            5999999999999999999987     89999999987643     346999999999887 499999987521     2


Q ss_pred             CCHHHHHHHHH-----HHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           76 LSVEERDEYVN-----SLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        76 ~~~~~~~~~v~-----~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      .+.++..+..+     +.+..  +.+..|+.+|+ ....||||||||++|||+|+++|++++|||||+|||+.++..+.+
T Consensus       436 ~~~~~~~~a~~~~~~~~~i~~--l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~  512 (585)
T TIGR01192       436 ATDEEVYEAAKAAAAHDFILK--RSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKN  512 (585)
T ss_pred             CCHHHHHHHHHHhCcHHHHHh--ccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence            23333322221     22222  22233566655 477899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .|+++. +++|+|+++|+++ .+ ..+|++++|++|+++..|+.++
T Consensus       513 ~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~  555 (585)
T TIGR01192       513 AIDALR-KNRTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKGSFQE  555 (585)
T ss_pred             HHHHHh-CCCEEEEEEcChH-HH-HcCCEEEEEECCEEEEECCHHH
Confidence            999884 5899999999974 44 5699999999999999887654

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.97  E-value=6.6e-31  Score=300.71  Aligned_cols=181  Identities=33%  Similarity=0.505  Sum_probs=157.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||+|+|+|+.+++     +|+|.+||+++...         ++.++|++|+..+++.+|+.||+.+.....
T Consensus        40 ~G~nGsGKSTLl~~i~Gl~~~~-----~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~  114 (648)
T PRK10535         40 VGASGSGKSTLMNILGCLDKPT-----SGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA  114 (648)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc
Confidence            5999999999999999999887     89999999987542         235999999999999999999998865432


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                         ....++.++++.++++.+||.+..|     ..++.||||||||++||++|+.+|++++|||||+|||+.+++.+.+.
T Consensus       115 ---~~~~~~~~~~~~~~l~~lgl~~~~~-----~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~l  186 (648)
T PRK10535        115 ---GLERKQRLLRAQELLQRLGLEDRVE-----YQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI  186 (648)
T ss_pred             ---CCCHHHHHHHHHHHHHHCCChhhhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence               1234556677899999999965544     45678999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       152 L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |++++++|+|+|+++|++. .+ ..||++++|++|++++.|++++
T Consensus       187 l~~l~~~g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~  229 (648)
T PRK10535        187 LHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQE  229 (648)
T ss_pred             HHHHHhcCCEEEEECCCHH-HH-HhCCEEEEEECCEEEeecCccc
Confidence            9999878999999999975 44 5699999999999999999876

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.97  E-value=6.7e-32  Score=305.91  Aligned_cols=177  Identities=27%  Similarity=0.431  Sum_probs=146.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+|+|+|+++|.     +|+|.+||.++++.     ++.++|+||++.+|+. |++||+.++.    + .
T Consensus       372 vG~sGsGKSTLlklL~gl~~p~-----~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~-~  440 (576)
T TIGR02204       372 VGPSGAGKSTLFQLLLRFYDPQ-----SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGR----P-D  440 (576)
T ss_pred             ECCCCCCHHHHHHHHHhccCCC-----CCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCC----C-C
Confidence            5999999999999999999987     89999999987653     2469999999999986 9999998742    1 1


Q ss_pred             CCHHHHHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.+    ++.+.++..|+.       +-.|+.+|+ ....||||||||++|||+++++|++++||||||+||+.+++.+
T Consensus       441 ~~~~----~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i  515 (576)
T TIGR02204       441 ATDE----EVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLV  515 (576)
T ss_pred             CCHH----HHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHH
Confidence            2222    344555555543       223566665 4678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++.|+++. +++|+|++||++.  ....+|+++.|++|+++..|+.++
T Consensus       516 ~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~  560 (576)
T TIGR02204       516 QQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAE  560 (576)
T ss_pred             HHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHH
Confidence            99999985 4899999999974  456799999999999999998654

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.97  E-value=3.5e-31  Score=263.03  Aligned_cols=177  Identities=23%  Similarity=0.234  Sum_probs=140.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEE-ECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLE-VNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~-~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +||||||||||+|+|+|..+++     +|+|. ++|...        .+.++..+++.+|++||+.+.+..+.   ...+
T Consensus        19 ~G~NGsGKSTLlk~i~Gl~~~~-----sG~i~~~~~~~~--------~~~~~~~l~~~ltv~enl~~~~~~~~---~~~~   82 (213)
T PRK15177         19 LAAPGSGKTTLTRLLCGLDAPD-----EGDFIGLRGDAL--------PLGANSFILPGLTGEENARMMASLYG---LDGD   82 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCccCC-----CCCEEEecCcee--------ccccccccCCcCcHHHHHHHHHHHcC---CCHH
Confidence            6999999999999999999887     89997 777532        12345678899999999998766431   2222


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                      +..   +.+.+.++|....|     ..++.||||||||++||++|+.+|++++|||||+++|+.++..+.+.+.+..+ +
T Consensus        83 ~~~---~~~~~~~~l~~~~~-----~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~  153 (213)
T PRK15177         83 EFS---HFCYQLTQLEQCYT-----DRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-Q  153 (213)
T ss_pred             HHH---HHHHHHhChhHHhh-----chHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-C
Confidence            222   23445567755444     35678999999999999999999999999999999999999999998865443 4


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhh
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSR  204 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~  204 (607)
                      +|+|+++|++. .+...||++++|++|++++.|+.++ ...+++.
T Consensus       154 ~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~-~~~~~~~  196 (213)
T PRK15177        154 KGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQ-ATALFEQ  196 (213)
T ss_pred             CcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHH-HHHHHHH
Confidence            68999999975 6777899999999999999998877 6666544

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=3.8e-31  Score=259.10  Aligned_cols=160  Identities=23%  Similarity=0.252  Sum_probs=133.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +|+||||||||+++|+|..+++     +|+|.++|.++... .+.++|++|+..+++..||+||+.+.....     .  
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----~--   99 (195)
T PRK13541         32 KGANGCGKSSLLRMIAGIMQPS-----SGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY-----N--   99 (195)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhc-----c--
Confidence            6999999999999999999887     89999999887543 245899999988888899999998865432     1  


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                       ..++++++++.+++.+..+     +.++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++.+++|
T Consensus       100 -~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~  173 (195)
T PRK13541        100 -SAETLYAAIHYFKLHDLLD-----EKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSG  173 (195)
T ss_pred             -cHHHHHHHHHHcCCHhhhc-----cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC
Confidence             1345778889999965443     4567899999999999999999999999999999999999999999998877789


Q ss_pred             CeEEEEecCChhHHHhhhcce
Q 007344          160 HTVICSIHQPRGSVYFKFDDI  180 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v  180 (607)
                      +|+|+++|++. .+. .+|-+
T Consensus       174 ~tiii~sh~~~-~i~-~~~~~  192 (195)
T PRK13541        174 GIVLLSSHLES-SIK-SAQIL  192 (195)
T ss_pred             CEEEEEeCCcc-ccc-hhhee
Confidence            99999999974 333 34544

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.97  E-value=4.2e-31  Score=253.42  Aligned_cols=133  Identities=38%  Similarity=0.626  Sum_probs=119.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|..++.     +|+|.++|+++...     +++++|++|++.+++ .|+.||+           
T Consensus        34 ~G~nGsGKstLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l-----------   96 (171)
T cd03228          34 VGPSGSGKSTLLKLLLRLYDPT-----SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI-----------   96 (171)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCC-----CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-----------
Confidence            5999999999999999999886     89999999876432     245999999998776 5998886           


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                                                        |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus        97 ----------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~  142 (171)
T cd03228          97 ----------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL  142 (171)
T ss_pred             ----------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh
Confidence                                              9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344          156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       156 a~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  187 (607)
                      ++ ++|+|+++|++. .+.. ||++++|++|+
T Consensus       143 ~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~  171 (171)
T cd03228         143 AK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR  171 (171)
T ss_pred             cC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence            64 799999999975 5655 99999999885

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.97  E-value=1.7e-31  Score=282.44  Aligned_cols=184  Identities=30%  Similarity=0.478  Sum_probs=156.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||.|+|.|..+|.     +|.|.+||.+++.-     .+.|||+||+-.+|+. ||.||+.-..     ..
T Consensus       368 IGPSgSGKSTLaR~lvG~w~p~-----~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~-----~~  436 (580)
T COG4618         368 IGPSGSGKSTLARLLVGIWPPT-----SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFG-----EE  436 (580)
T ss_pred             ECCCCccHHHHHHHHHcccccC-----CCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhcc-----cc
Confidence            6999999999999999999987     89999999887653     3569999999999998 9999985332     12


Q ss_pred             CCHHH-----HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           76 LSVEE-----RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        76 ~~~~~-----~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      .+.++     +...|.+++  +.+.+-.||.+|+ -...||||||||+++||||..+|.+++||||-|+||......+.+
T Consensus       437 ~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~  513 (580)
T COG4618         437 ADPEKVIEAARLAGVHELI--LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAA  513 (580)
T ss_pred             CCHHHHHHHHHHcChHHHH--HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHH
Confidence            22221     222355555  4567789999997 467899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhH
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAY  201 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~  201 (607)
                      .+.+++++|.|+|+++|.|+  +...+|+|++|++|++-.+|+.++ ....
T Consensus       514 Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~e-VLa~  561 (580)
T COG4618         514 AILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREE-VLAK  561 (580)
T ss_pred             HHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHH-HHHH
Confidence            99999999999999999884  678899999999999999999887 4433

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.97  E-value=6.9e-31  Score=271.22  Aligned_cols=168  Identities=24%  Similarity=0.372  Sum_probs=133.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+++|+|++++.     +|+|.++|        +++|++|++.+++. ||+||+.+....      ... 
T Consensus        69 iG~NGsGKSTLl~~I~Gl~~p~-----~G~I~i~g--------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~~-  127 (282)
T cd03291          69 TGSTGSGKTSLLMLILGELEPS-----EGKIKHSG--------RISFSSQFSWIMPG-TIKENIIFGVSY------DEY-  127 (282)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECC--------EEEEEeCccccccc-CHHHHhhccccc------CHH-
Confidence            5999999999999999999887     89999998        49999999988875 999999874321      111 


Q ss_pred             HHHHHHHHHHHcCCCcc-------ccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH-
Q 007344           81 RDEYVNSLLFKLGLVSC-------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL-  152 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L-  152 (607)
                         .+.+.++.+++.+.       .++.+ +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+ 
T Consensus       128 ---~~~~~l~~~~l~~~l~~~~~~~~~~~-~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll  203 (282)
T cd03291         128 ---RYKSVVKACQLEEDITKFPEKDNTVL-GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV  203 (282)
T ss_pred             ---HHHHHHHHhCCHHHHHhcccccccee-cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHH
Confidence               12233333343221       12222 2246789999999999999999999999999999999999999999865 


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ ++.|||+++|++. .+ ..||++++|++|++++.|++++
T Consensus       204 ~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~  244 (282)
T cd03291         204 CKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSE  244 (282)
T ss_pred             HHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence            5554 5799999999975 44 5799999999999999998654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.97  E-value=1.3e-30  Score=248.89  Aligned_cols=131  Identities=31%  Similarity=0.458  Sum_probs=116.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+++|+|.++++     +|+|.++|.      ++++|++|++.++ ..||+||+.+.             
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~~~------~~i~~~~q~~~~~-~~tv~~nl~~~-------------   87 (166)
T cd03223          33 TGPSGTGKSSLFRALAGLWPWG-----SGRIGMPEG------EDLLFLPQRPYLP-LGTLREQLIYP-------------   87 (166)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCC------ceEEEECCCCccc-cccHHHHhhcc-------------
Confidence            5999999999999999999887     899999873      5699999998765 57999998652             


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH  160 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~  160 (607)
                                               ..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.++++   ++
T Consensus        88 -------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~  139 (166)
T cd03223          88 -------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GI  139 (166)
T ss_pred             -------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CC
Confidence                                     13579999999999999999999999999999999999999999999986   68


Q ss_pred             eEEEEecCChhHHHhhhcceeeecCC
Q 007344          161 TVICSIHQPRGSVYFKFDDIVLLTEG  186 (607)
Q Consensus       161 tvi~~~H~p~~~i~~~~D~v~lL~~G  186 (607)
                      |+|+++|++. . ...+|++++|++|
T Consensus       140 tiiivsh~~~-~-~~~~d~i~~l~~~  163 (166)
T cd03223         140 TVISVGHRPS-L-WKFHDRVLDLDGE  163 (166)
T ss_pred             EEEEEeCChh-H-HhhCCEEEEEcCC
Confidence            9999999974 3 4689999999765

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=4e-31  Score=261.00  Aligned_cols=187  Identities=28%  Similarity=0.423  Sum_probs=159.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEc-cCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVR-QEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~-Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|||||||||+||+|+|++.|+     +|.|.+||...-..    -+++++|+ |.-.+...+-+.|.+......+   .
T Consensus        56 lGaNGAGKSTtLKmLTGll~p~-----~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~  127 (325)
T COG4586          56 LGANGAGKSTTLKMLTGLLLPT-----SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---E  127 (325)
T ss_pred             EcCCCCcchhhHHHHhCccccC-----CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---h
Confidence            6999999999999999999998     89999999865332    14577775 5556767777888887765543   4


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      .+.++-+++.+.+.+.|+|+...     +.++|.||-|||.|+.||.+|+++|+||||||||-|||..++..+.+.|++.
T Consensus       128 Ipd~~F~~r~~~l~eiLdl~~~l-----k~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~  202 (325)
T COG4586         128 IPDDEFAERLDFLTEILDLEGFL-----KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY  202 (325)
T ss_pred             CCHHHHHHHHHHHHHHhcchhhh-----hhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHH
Confidence            56777888999999999996444     3467899999999999999999999999999999999999999999999999


Q ss_pred             H-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHh
Q 007344          156 A-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYF  202 (607)
Q Consensus       156 a-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f  202 (607)
                      . +++.||+.+||+. ..+..+||||++++.|+++|.|+.++ ..+-|
T Consensus       203 n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~-l~~~f  248 (325)
T COG4586         203 NEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQ-LQEQF  248 (325)
T ss_pred             HHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHH-HHHHh
Confidence            7 5689999999996 57999999999999999999999887 44433

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.97  E-value=1.9e-30  Score=264.41  Aligned_cols=172  Identities=26%  Similarity=0.355  Sum_probs=142.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEE-----------ECCeeCCCc-------cceEEEEccCCCCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLE-----------VNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRE   62 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~-----------~~G~~~~~~-------~~~i~yv~Q~~~l~~~lTV~E   62 (607)
                      +||||||||||||+|+|+++++     +|+|.           ++|.++...       ..+++|++|+...++. ++.+
T Consensus        32 vG~nGsGKSTLlk~l~Gl~~p~-----~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~  105 (255)
T cd03236          32 VGPNGIGKSTALKILAGKLKPN-----LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKG  105 (255)
T ss_pred             ECCCCCCHHHHHHHHhCCcCCC-----CceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-HHHH
Confidence            5999999999999999999987     89995           778765431       1237899999887774 8888


Q ss_pred             HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 007344           63 TLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDA  142 (607)
Q Consensus        63 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~  142 (607)
                      ++.+...        ..+.++.+.++++.+||.+..+     ..++.||||||||++||++|+.+|+++++||||+|||+
T Consensus       106 ~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~  172 (255)
T cd03236         106 KVGELLK--------KKDERGKLDELVDQLELRHVLD-----RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI  172 (255)
T ss_pred             HHHHHhc--------hhHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence            8876421        1233456789999999965443     45678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCC
Q 007344          143 FQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP  193 (607)
Q Consensus       143 ~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~  193 (607)
                      .++..+.+.|++++++|+|||+++|++ ..+...||++++| +|++.+.|-
T Consensus       173 ~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l-~~~~~~~~~  221 (255)
T cd03236         173 KQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCL-YGEPGAYGV  221 (255)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEE-CCCCCccee
Confidence            999999999999988899999999996 4677789999999 466766553

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.8e-30  Score=291.43  Aligned_cols=177  Identities=26%  Similarity=0.429  Sum_probs=144.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHH-c---------
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAE-L---------   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-~---------   70 (607)
                      +||||||||||||+|+|.++++     +|+|.++|.      .++||++|++.+++.+||+|++.+... .         
T Consensus        33 iG~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  101 (530)
T PRK15064         33 IGANGCGKSTFMKILGGDLEPS-----AGNVSLDPN------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDR  101 (530)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEecCC------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHH
Confidence            6999999999999999999887     899999873      359999999999999999999986421 0         


Q ss_pred             --cCCCC-----------------CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeE
Q 007344           71 --QLPEI-----------------LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVI  131 (607)
Q Consensus        71 --~~~~~-----------------~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~il  131 (607)
                        ..+..                 ....+.+++++++++.+||.+..+    +..++.|||||||||+||++|+.+|++|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----~~~~~~LSgGq~qrv~lA~aL~~~p~lL  177 (530)
T PRK15064        102 IYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH----YGLMSEVAPGWKLRVLLAQALFSNPDIL  177 (530)
T ss_pred             HhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh----cCchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence              00000                 000123456889999999964221    2356789999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCee-eeeCCCCC
Q 007344          132 YADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL-VYAGPARD  196 (607)
Q Consensus       132 lLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i-v~~G~~~~  196 (607)
                      ||||||+|||+.++..+.+.|++   .|.|||+++|++. .+...||++++|++|++ ++.|+.++
T Consensus       178 lLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~  239 (530)
T PRK15064        178 LLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDE  239 (530)
T ss_pred             EEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHH
Confidence            99999999999999999999864   5899999999964 67889999999999999 47887654

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.97  E-value=2e-30  Score=246.86  Aligned_cols=125  Identities=31%  Similarity=0.498  Sum_probs=113.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +|||||||||||++|+|+.++.     +|+|.++|.++...      ++.++|++|                        
T Consensus        32 ~G~nGsGKSTLl~~i~G~~~~~-----~G~v~~~g~~~~~~~~~~~~~~~i~~~~q------------------------   82 (163)
T cd03216          32 LGENGAGKSTLMKILSGLYKPD-----SGEILVDGKEVSFASPRDARRAGIAMVYQ------------------------   82 (163)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCEECCcCCHHHHHhcCeEEEEe------------------------
Confidence            5999999999999999999887     89999999876532      234888888                        


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                                                         ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus        83 -----------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~  127 (163)
T cd03216          83 -----------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRR  127 (163)
T ss_pred             -----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence                                               999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeee
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVY  190 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~  190 (607)
                      ++++|.|+|+++|++. .+...+|++++|++|++++
T Consensus       128 ~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         128 LRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence            9878999999999964 6778899999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.97  E-value=1.3e-30  Score=289.79  Aligned_cols=182  Identities=21%  Similarity=0.318  Sum_probs=141.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCC--CCCHHHHHHHHHHc--
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFS--QLTVRETLSLAAEL--   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~--~lTV~E~l~~~~~~--   70 (607)
                      +||||||||||+|+|+|..++.    .+|+|.++|++....      +++++|++|++.++.  ..|+++++.+....  
T Consensus       292 ~G~NGsGKSTLl~~l~G~~~~~----~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~  367 (490)
T PRK10938        292 VGPNGAGKSTLLSLITGDHPQG----YSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSI  367 (490)
T ss_pred             ECCCCCCHHHHHHHHcCCCCcc----cCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhcccccc
Confidence            6999999999999999987541    179999999765321      245999999876543  35777766543211  


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           71 QLPEILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ....... .+.+++++++++.+||.+ ..     +++++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.
T Consensus       368 ~~~~~~~-~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~  441 (490)
T PRK10938        368 GIYQAVS-DRQQKLAQQWLDILGIDKRTA-----DAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVR  441 (490)
T ss_pred             ccccCCC-HHHHHHHHHHHHHcCCchhhc-----cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH
Confidence            1111112 233457889999999964 44     3456789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCC-eEEEEecCChhHHHh-hhcceeeecCCeeeeeCC
Q 007344          150 EALRQLAQDGH-TVICSIHQPRGSVYF-KFDDIVLLTEGKLVYAGP  193 (607)
Q Consensus       150 ~~L~~la~~g~-tvi~~~H~p~~~i~~-~~D~v~lL~~G~iv~~G~  193 (607)
                      +.|++++++|. |||+++|++. .+.. .+|++++|++|++++.-.
T Consensus       442 ~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~~~~~  486 (490)
T PRK10938        442 RFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIYRYVQ  486 (490)
T ss_pred             HHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceEEeec
Confidence            99999987765 6999999974 5655 589999999999886543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.97  E-value=3.3e-31  Score=324.10  Aligned_cols=183  Identities=25%  Similarity=0.389  Sum_probs=149.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCC-------------------------------------------------CCccceEE
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASP-------------------------------------------------RLHLSGLL   31 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~-------------------------------------------------~~~~~G~I   31 (607)
                      +||||||||||+++|.|+++|..                                                 ....+|+|
T Consensus      1200 VG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I 1279 (1466)
T PTZ00265       1200 VGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKI 1279 (1466)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeE
Confidence            69999999999999999998720                                                 00138999


Q ss_pred             EECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-------CCCcccc
Q 007344           32 EVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKL-------GLVSCAD   99 (607)
Q Consensus        32 ~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~d   99 (607)
                      .+||.++++.     ++.+|||+|++.+|+. |++|||.++..     ..+.++.    +++++..       .|.+-.|
T Consensus      1280 ~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~-----~at~eeI----~~A~k~A~l~~fI~~LP~Gyd 1349 (1466)
T PTZ00265       1280 LLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKE-----DATREDV----KRACKFAAIDEFIESLPNKYD 1349 (1466)
T ss_pred             EECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCC-----CCCHHHH----HHHHHHcCCHHHHHhCccccC
Confidence            9999998653     3569999999999975 99999999631     2344433    3333333       3455668


Q ss_pred             ccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCeEEEEecCChhHHHhhhc
Q 007344          100 SNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICSIHQPRGSVYFKFD  178 (607)
Q Consensus       100 ~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g~tvi~~~H~p~~~i~~~~D  178 (607)
                      |.+|+ ....||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++. .+++|+|+++|+++  ..+.||
T Consensus      1350 T~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD 1426 (1466)
T PTZ00265       1350 TNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSD 1426 (1466)
T ss_pred             CccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCC
Confidence            99985 577899999999999999999999999999999999999999999999986 46899999999963  456699


Q ss_pred             ceeeecC----Ceee-eeCCCCC
Q 007344          179 DIVLLTE----GKLV-YAGPARD  196 (607)
Q Consensus       179 ~v~lL~~----G~iv-~~G~~~~  196 (607)
                      +|++|++    |+++ +.|+.++
T Consensus      1427 ~Ivvl~~~~~~G~iv~e~Gth~e 1449 (1466)
T PTZ00265       1427 KIVVFNNPDRTGSFVQAHGTHEE 1449 (1466)
T ss_pred             EEEEEeCCCCCCCEEEEecCHHH
Confidence            9999998    9955 7998665

>PRK13409 putative ATPase RIL; Provisional

Probab=99.97  E-value=3.3e-30  Score=290.84  Aligned_cols=168  Identities=28%  Similarity=0.357  Sum_probs=143.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++        .+++|++|+..+.+.+||+|++.+....     ...  
T Consensus       371 ~G~NGsGKSTLlk~L~Gl~~p~-----~G~I~~~--------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~--  430 (590)
T PRK13409        371 VGPNGIGKTTFAKLLAGVLKPD-----EGEVDPE--------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS--  430 (590)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEEe--------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh--
Confidence            5999999999999999999887     8999886        2599999998888899999999875321     111  


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g  159 (607)
                       ...++++++.+||.+..|     +.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|
T Consensus       431 -~~~~~~~L~~l~l~~~~~-----~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g  504 (590)
T PRK13409        431 -SYYKSEIIKPLQLERLLD-----KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEERE  504 (590)
T ss_pred             -HHHHHHHHHHCCCHHHHh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence             124678999999965444     46778999999999999999999999999999999999999999999999986 48


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +|||+++||+ ..+..++|++++|+ |++...|...+
T Consensus       505 ~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~~~  539 (590)
T PRK13409        505 ATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHASG  539 (590)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEc-CcceeeeecCC
Confidence            9999999996 46788899999996 58877776544

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.97  E-value=2.5e-30  Score=291.29  Aligned_cols=169  Identities=24%  Similarity=0.347  Sum_probs=140.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|.++|+     +|+|.+||.++++.     +++++||+|++.+|+. |++||   .      ..
T Consensus       355 vG~sGsGKSTL~~ll~g~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~------~~  419 (547)
T PRK10522        355 IGGNGSGKSTLAMLLTGLYQPQ-----SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G------KP  419 (547)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c------Cc
Confidence            5999999999999999999987     89999999988653     3469999999998886 78776   1      11


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCC--cCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDA--KVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~--~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                          ..++.+++.++.+++.+..+  .++.  ....||||||||++|||+++++|++|+||||||+||+.++..+.+.+.
T Consensus       420 ----~~~~~~~~~~~~~~l~~~~~--~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~  493 (547)
T PRK10522        420 ----ANPALVEKWLERLKMAHKLE--LEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLL  493 (547)
T ss_pred             ----hHHHHHHHHHHHcCCchhhh--ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence                12345778888898865432  2221  245899999999999999999999999999999999999999999998


Q ss_pred             HHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          154 QLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       154 ~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      +.. +.|+|+|+++|+++  ....+|++++|++|+++...
T Consensus       494 ~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~~  531 (547)
T PRK10522        494 PLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSELT  531 (547)
T ss_pred             HHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEec
Confidence            764 45899999999973  46679999999999998764

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.97  E-value=1.5e-30  Score=292.11  Aligned_cols=164  Identities=37%  Similarity=0.542  Sum_probs=136.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|+.+|+     +|+|.+||.++++.     +++++||+|++.+|+. |++||+.++..     .
T Consensus       354 vG~sGsGKSTL~~ll~g~~~~~-----~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~  422 (529)
T TIGR02857       354 VGPSGAGKSTLLNLLLGFVDPT-----EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP-----D  422 (529)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC-----C
Confidence            5999999999999999999987     89999999987653     3469999999999985 99999987531     1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCc-------cccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVS-------CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+++    .+.+.++..++.+       -.||.+|+ ....||||||||++|||+|+++|++++||||||+||+.+++.+
T Consensus       423 ~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i  497 (529)
T TIGR02857       423 ASDA----EIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALV  497 (529)
T ss_pred             CCHH----HHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence            2222    3445555555532       34677765 5678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL  183 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL  183 (607)
                      .+.++++. +++|+|+++|+++  ..+.||++++|
T Consensus       498 ~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l  529 (529)
T TIGR02857       498 TEALRALA-QGRTVLLVTHRLA--LAERADRIVVL  529 (529)
T ss_pred             HHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence            99999885 5899999999974  34679999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=9.2e-31  Score=302.79  Aligned_cols=181  Identities=31%  Similarity=0.472  Sum_probs=153.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|||||||||.+.+|-..++|.     +|.|.+||.++++.     ++++|.|.|+|.||.. |++||+.|+..    . 
T Consensus      1022 VG~SGsGKSTvI~LLeRfYdp~-----~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~----~- 1090 (1228)
T KOG0055|consen 1022 VGPSGSGKSTVISLLERFYDPD-----AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSE----E- 1090 (1228)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCC-----CCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccCC----C-
Confidence            6999999999999999999987     89999999998764     3569999999999987 99999999821    1 


Q ss_pred             CCHHHHHHHHHH---HHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNS---LLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        76 ~~~~~~~~~v~~---~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                      .+.+|..+..+.   -=-..+|.+-.||.+|+ +..+||||||||++||||+++||+||||||.||.||+++.+.+-+.|
T Consensus      1091 vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeAL 1169 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLANAHNFISSLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEAL 1169 (1228)
T ss_pred             CCHHHHHHHHHHhhhHHHHhcCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHH
Confidence            344444332211   11124678889999997 57789999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+. ..|+|.|++.|.++  ..+.+|.|.++++|++++.|+.++
T Consensus      1170 d~a-~~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1170 DRA-MEGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred             HHh-hcCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHH
Confidence            886 45899999999864  456689999999999999998766

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.97  E-value=1.1e-30  Score=306.95  Aligned_cols=189  Identities=30%  Similarity=0.461  Sum_probs=170.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +|+|||||||++|+|+|..+++     +|++.++|.++...      .+.+||+||+|.+.+.+|.||+|.+.++++.  
T Consensus       597 LG~NGAGKtT~f~mltG~~~~t-----~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG--  669 (885)
T KOG0059|consen  597 LGVNGAGKTTTFKMLTGETKPT-----SGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRG--  669 (885)
T ss_pred             ecCCCCCchhhHHHHhCCccCC-----cceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcC--
Confidence            5999999999999999999987     89999999987642      3459999999999999999999999999874  


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                       .+..+.++.++.+++.+||.+.+|+     .++.+|||+|||+++|.+++.+|++++|||||+|+||.+++.+.+++++
T Consensus       670 -~~~~di~~~v~~ll~~~~L~~~~~~-----~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~  743 (885)
T KOG0059|consen  670 -LPRSDIGSAIEKLLRLVGLGPYANK-----QVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIAR  743 (885)
T ss_pred             -CChhHHHHHHHHHHHHcCChhhhcc-----chhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence             5566777889999999999666655     4668999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhh
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSR  204 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~  204 (607)
                      ++++|+.||+|+|.. ++...+|||+.+|.+|++...|++.+ .+..|..
T Consensus       744 ~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~-LKsrfG~  791 (885)
T KOG0059|consen  744 LRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQE-LKSRYGS  791 (885)
T ss_pred             HHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHH-HHhhcCC
Confidence            999888999999995 58899999999999999999999987 7766643

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=2.6e-30  Score=258.20  Aligned_cols=168  Identities=31%  Similarity=0.455  Sum_probs=144.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +|+||||||||-|+|.|+++|+     +|+|.++|+++....                                   +++
T Consensus        45 VGESG~GKSTlgr~i~~L~~pt-----~G~i~f~g~~i~~~~-----------------------------------~~~   84 (268)
T COG4608          45 VGESGCGKSTLGRLILGLEEPT-----SGEILFEGKDITKLS-----------------------------------KEE   84 (268)
T ss_pred             EecCCCCHHHHHHHHHcCcCCC-----CceEEEcCcchhhcc-----------------------------------hhH
Confidence            6999999999999999999987     899999998864432                                   345


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g  159 (607)
                      ..+++.++|+.+||.    ....+++++++|||||||+.|||||+.+|+++++|||+|.||...+.+++++|+++. +.|
T Consensus        85 ~~~~v~elL~~Vgl~----~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~  160 (268)
T COG4608          85 RRERVLELLEKVGLP----EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG  160 (268)
T ss_pred             HHHHHHHHHHHhCCC----HHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC
Confidence            667899999999984    445567899999999999999999999999999999999999999999999999998 459


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhhcCCCCCCCCCHHHHHHHh
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADL  222 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~~  222 (607)
                      .|.++++||. ..+..++||+.+|..|++|+.|+.++.         +..|.|..+...+..+
T Consensus       161 lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~---------~~~p~HpYTk~Ll~a~  213 (268)
T COG4608         161 LTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEV---------FSNPLHPYTKALLSAV  213 (268)
T ss_pred             CeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHH---------hhCCCCHHHHHHHHhC
Confidence            9999999995 578899999999999999999998763         3346655555444433

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.97  E-value=5e-30  Score=289.11  Aligned_cols=175  Identities=27%  Similarity=0.329  Sum_probs=143.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHH-cc--------
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAE-LQ--------   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-~~--------   71 (607)
                      +||||||||||||+|+|.++++     +|+|.+++.      .++|||+|++.+++.+||.||+.+... .+        
T Consensus        39 iG~NGsGKSTLlk~i~G~~~p~-----~G~i~~~~~------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  107 (556)
T PRK11819         39 LGLNGAGKSTLLRIMAGVDKEF-----EGEARPAPG------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNE  107 (556)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEecCC------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHH
Confidence            6999999999999999999886     899998752      469999999999999999999987531 00        


Q ss_pred             ----CCCCCC--------------------HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhC
Q 007344           72 ----LPEILS--------------------VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIAS  127 (607)
Q Consensus        72 ----~~~~~~--------------------~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~  127 (607)
                          ......                    ..+.+++++++++.+||.. .     ++.++.|||||||||+||++|+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-----~~~~~~LSgGqkqrv~la~al~~~  181 (556)
T PRK11819        108 IYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-W-----DAKVTKLSGGERRRVALCRLLLEK  181 (556)
T ss_pred             HHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-c-----cCchhhcCHHHHHHHHHHHHHhCC
Confidence                000000                    0012456888999999942 2     446778999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeee-eeCCCCC
Q 007344          128 PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPARD  196 (607)
Q Consensus       128 p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv-~~G~~~~  196 (607)
                      |++|||||||+|||+.+...+.+.|+++.   .|||+++|++ ..+...+|++++|++|+++ +.|+.++
T Consensus       182 p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~  247 (556)
T PRK11819        182 PDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSS  247 (556)
T ss_pred             CCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-HHHHhhcCeEEEEeCCEEEEecCCHHH
Confidence            99999999999999999999999999873   5999999996 5778889999999999986 7776543

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=3.1e-30  Score=246.87  Aligned_cols=181  Identities=31%  Similarity=0.419  Sum_probs=148.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc-----ceEEEEccCC--CCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA-----YKFAYVRQED--LFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~-----~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|.||||||||+|+|+|.++++     +|+|.++|.++++..     ..++-|+|++  -.++.+|+.||+..+..-...
T Consensus        38 iGsNGAGKSTlln~iaG~l~~t-----~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~  112 (263)
T COG1101          38 IGSNGAGKSTLLNAIAGDLKPT-----SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKK  112 (263)
T ss_pred             EcCCCccHHHHHHHhhCccccC-----CceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcc
Confidence            6999999999999999999998     899999999987652     2478899998  469999999999987653222


Q ss_pred             CCCCH---HHHHHHHHHHHHHc--CCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           74 EILSV---EERDEYVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        74 ~~~~~---~~~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      +..+.   +.+++...+.++.+  ||++..++++|     -|||||||-+++++|-++.|+||+|||-|++|||.++..+
T Consensus       113 rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~v  187 (263)
T COG1101         113 RGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFV  187 (263)
T ss_pred             cccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHH
Confidence            22222   23334445555654  55666666554     5999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          149 MEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       149 ~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      ++.-.++.+ .+.|.+++||+.. ....+-+|+++|++|+||..-
T Consensus       188 m~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv  231 (263)
T COG1101         188 MELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV  231 (263)
T ss_pred             HHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence            999999874 5679999999976 566778999999999999754

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.97  E-value=1.2e-30  Score=292.88  Aligned_cols=152  Identities=35%  Similarity=0.514  Sum_probs=127.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+|+|+|..+|+     +|+|.+||.++++.    +++++||+|++.+|+. |++||+.++.    + ..
T Consensus       367 vG~SGsGKSTLl~lL~g~~~p~-----~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~-~~  435 (529)
T TIGR02868       367 LGPSGSGKSTLLMLLTGLLDPL-----QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR----P-DA  435 (529)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccC----C-CC
Confidence            5999999999999999999987     89999999987643    3469999999999987 9999999862    1 22


Q ss_pred             CHHHHHHHHHHHHHHcCC-------CccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      +++    ++.++++..++       .+-.||.+|+ ....||||||||++|||||+++|+||+||||||+||+.++..+.
T Consensus       436 ~~e----~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~  510 (529)
T TIGR02868       436 TDE----ELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELL  510 (529)
T ss_pred             CHH----HHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            333    34455555544       3445788886 55789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEecCC
Q 007344          150 EALRQLAQDGHTVICSIHQP  169 (607)
Q Consensus       150 ~~L~~la~~g~tvi~~~H~p  169 (607)
                      +.|+++. +++|+|+++|++
T Consensus       511 ~~l~~~~-~~~TvIiItHrl  529 (529)
T TIGR02868       511 EDLLAAL-SGKTVVVITHHL  529 (529)
T ss_pred             HHHHHhc-CCCEEEEEecCC
Confidence            9999864 479999999974

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.9e-30  Score=288.61  Aligned_cols=168  Identities=28%  Similarity=0.382  Sum_probs=140.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDL--FFSQLTVRETLSLAAELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~   78 (607)
                      +||||||||||||+|+|..+|+     +|+|.++|.      .++||++|+..  +++.+||+|++.+...   .   . 
T Consensus       351 ~G~NGsGKSTLl~~i~G~~~p~-----~G~i~~~~~------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~---~---~-  412 (530)
T PRK15064        351 IGENGVGKTTLLRTLVGELEPD-----SGTVKWSEN------ANIGYYAQDHAYDFENDLTLFDWMSQWRQ---E---G-  412 (530)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCc------eEEEEEcccccccCCCCCcHHHHHHHhcc---C---C-
Confidence            6999999999999999999887     899999873      46999999863  5667999999864211   1   1 


Q ss_pred             HHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           79 EERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                       ..+++++++++.+|+. +..     +..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++  
T Consensus       413 -~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--  484 (530)
T PRK15064        413 -DDEQAVRGTLGRLLFSQDDI-----KKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--  484 (530)
T ss_pred             -ccHHHHHHHHHHcCCChhHh-----cCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--
Confidence             1234678899999994 333     4467789999999999999999999999999999999999999999999886  


Q ss_pred             cCCeEEEEecCChhHHHhhhcceeeecCCeee-eeCCCCC
Q 007344          158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPARD  196 (607)
Q Consensus       158 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv-~~G~~~~  196 (607)
                       +.|||++||++ ..+...||++++|++|+++ +.|++.+
T Consensus       485 -~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~  522 (530)
T PRK15064        485 -EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEE  522 (530)
T ss_pred             -CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHH
Confidence             45999999996 4778889999999999998 7776543

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.1e-29  Score=245.98  Aligned_cols=198  Identities=25%  Similarity=0.301  Sum_probs=165.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----c--ceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----A--YKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~--~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      |||||||||||.++|+|.-...   ..+|+|.++|+++...    +  .-+...+|.|.=+|..|+.+.|..+.+.+...
T Consensus        36 MGPNGsGKSTLa~~i~G~p~Y~---Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~  112 (251)
T COG0396          36 MGPNGSGKSTLAYTIMGHPKYE---VTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGA  112 (251)
T ss_pred             ECCCCCCHHHHHHHHhCCCCce---EecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhcc
Confidence            7999999999999999975433   3589999999998653    1  23788899999999999999999887754321


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCc-cccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                      .-...+..+.+++.++.+++.+ ..+..+    -.|+|||||||..|+..++.+|++.+||||-||||..+-+.|.+.++
T Consensus       113 ~~~~~~~~~~~~e~~~~l~~~~~~l~R~v----N~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~  188 (251)
T COG0396         113 RGILPEFIKELKEKAELLGLDEEFLERYV----NEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN  188 (251)
T ss_pred             ccccHHHHHHHHHHHHHcCCCHHHhhccc----CCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHH
Confidence            1112456677899999999965 344333    24899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhh--cceeeecCCeeeeeCCCCCchhhHhhhcCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKF--DDIVLLTEGKLVYAGPARDEPLAYFSRFGYTC  209 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~--D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~  209 (607)
                      +++++|.+++++||..  .+..+.  |++.+|.+|+++..|.+ + ...+++.-||.|
T Consensus       189 ~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-e-l~~~le~~gy~~  242 (251)
T COG0396         189 ALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-E-LAEELEEKGYDW  242 (251)
T ss_pred             HHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-H-HHHHHHHhchHH
Confidence            9999999999999985  455555  99999999999999998 5 778888888865

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.97  E-value=4.7e-30  Score=289.18  Aligned_cols=175  Identities=26%  Similarity=0.313  Sum_probs=141.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHc-cC-------
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAEL-QL-------   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~-~~-------   72 (607)
                      +|||||||||||++|+|+.+|+     +|+|.+++      ..++|||+|++.+++.+||+||+.+.... +.       
T Consensus        37 iG~NGsGKSTLl~~i~G~~~p~-----~G~i~~~~------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~  105 (552)
T TIGR03719        37 LGLNGAGKSTLLRIMAGVDKEF-----NGEARPAP------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNE  105 (552)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEecC------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHH
Confidence            6999999999999999999887     89999975      24699999999999999999999875321 00       


Q ss_pred             ----CCCCCHH---------------------HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhC
Q 007344           73 ----PEILSVE---------------------ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIAS  127 (607)
Q Consensus        73 ----~~~~~~~---------------------~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~  127 (607)
                          ......+                     +...+++++++.+|+.. .     +..++.|||||||||+||++|+.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-----~~~~~~LSgGqkqrv~la~al~~~  179 (552)
T TIGR03719       106 ISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-W-----DADVTKLSGGERRRVALCRLLLSK  179 (552)
T ss_pred             HHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-c-----cCchhhcCHHHHHHHHHHHHHhcC
Confidence                0000010                     01245667788888732 2     346778999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeee-eeCCCCC
Q 007344          128 PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPARD  196 (607)
Q Consensus       128 p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv-~~G~~~~  196 (607)
                      |++|+|||||+|||+.++..+.+.|+++   +.|||+++|++ ..+...||++++|++|+++ +.|+.++
T Consensus       180 p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~-~~~~~~~d~v~~l~~g~i~~~~g~~~~  245 (552)
T TIGR03719       180 PDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSS  245 (552)
T ss_pred             CCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcCeEEEEECCEEEEecCCHHH
Confidence            9999999999999999999999999876   35999999996 4778889999999999976 6776544

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.3e-30  Score=253.58  Aligned_cols=182  Identities=29%  Similarity=0.424  Sum_probs=149.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEcc--CCCCCCCCCHHHHHHHH--HHc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQ--EDLFFSQLTVRETLSLA--AEL   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q--~~~l~~~lTV~E~l~~~--~~~   70 (607)
                      +|||||||||||++++|..+++     +|.+.+.|++..+.      +++||+|.-  +..+.+..+|+|-+.-+  +..
T Consensus        63 ~G~NGsGKTTLL~ll~~~~~ps-----sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~si  137 (257)
T COG1119          63 VGPNGAGKTTLLSLLTGEHPPS-----SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASI  137 (257)
T ss_pred             ECCCCCCHHHHHHHHhcccCCC-----CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccc
Confidence            5999999999999999999887     89999999876432      456999964  34455677888877432  222


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      -.......++..+++..+++.+|+.+.+|.     ....||-||||||-|||||+.+|++||||||++|||...++.+++
T Consensus       138 G~y~~~~~~~~~~~a~~lle~~g~~~la~r-----~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~  212 (257)
T COG1119         138 GIYQEDLTAEDLAAAQWLLELLGAKHLADR-----PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLN  212 (257)
T ss_pred             cccccCCCHHHHHHHHHHHHHcchhhhccC-----chhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHH
Confidence            222212234556779999999999776665     455799999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc--CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCC
Q 007344          151 ALRQLAQD--GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP  193 (607)
Q Consensus       151 ~L~~la~~--g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~  193 (607)
                      .|.+++..  +.++|++||++ +++-..|++++++++|+++++|.
T Consensus       213 ~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         213 RLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             HHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence            99999854  78999999996 57888999999999999999874

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.97  E-value=6e-30  Score=288.52  Aligned_cols=170  Identities=22%  Similarity=0.336  Sum_probs=140.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|..+|+     +|+|.+||.++++.     ++.++||+|++.+|+. |+++|+.       +  
T Consensus       374 vG~sGsGKSTl~~ll~g~~~p~-----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~--  438 (555)
T TIGR01194       374 VGENGCGKSTLAKLFCGLYIPQ-----EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG-------E--  438 (555)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc-------c--
Confidence            5999999999999999999987     89999999998653     2459999999998876 8888731       1  


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccc-cccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH-
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADS-NVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR-  153 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~-~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~-  153 (607)
                         +..++.+++.++.+++.+..+. +-|......||||||||++|||+++++|++++|||||++||+.++..+.+.+. 
T Consensus       439 ---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~  515 (555)
T TIGR01194       439 ---HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP  515 (555)
T ss_pred             ---chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence               1223457788999998654322 22323347899999999999999999999999999999999999999998664 


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeee
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVY  190 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~  190 (607)
                      .+..+|+|+|+++|+++  ....+|+|++|++|+++.
T Consensus       516 ~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~  550 (555)
T TIGR01194       516 DLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVK  550 (555)
T ss_pred             HHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEE
Confidence            56667899999999974  456799999999999975

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=1.4e-30  Score=245.66  Aligned_cols=184  Identities=29%  Similarity=0.419  Sum_probs=158.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECC-eeCCCcc------ceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG-KPSSNKA------YKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G-~~~~~~~------~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|||||||||+|++|+|..+|+     +|+|.++| .++....      ..||--+|.+..|+.+||+|||..+.+...+
T Consensus        37 IGpNGAGKTT~mD~ItGKtrp~-----~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~  111 (249)
T COG4674          37 IGPNGAGKTTLMDVITGKTRPQ-----EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKS  111 (249)
T ss_pred             ECCCCCCceeeeeeecccCCCC-----cceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcc
Confidence            6999999999999999999887     89999999 6665432      3488899999999999999999998754321


Q ss_pred             C-----CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           74 E-----ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        74 ~-----~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      -     .....+-+++++++|+..||.+.+|..     ...||.||||++.|++-++++|++|++|||++|+--....+.
T Consensus       112 v~a~L~~r~~~~e~~ride~La~igL~~~~~~~-----A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~t  186 (249)
T COG4674         112 VFASLFARLRAEERRRIDELLATIGLGDERDRL-----AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT  186 (249)
T ss_pred             hHHHhhhhcChhHHHHHHHHHHHcccchhhhhh-----hhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHH
Confidence            0     011233456899999999998777654     456999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      -++|+.++. +++|+++.||. ..+..++|+|.+|++|.+...|+.++
T Consensus       187 aeLl~~la~-~hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL~EGsld~  232 (249)
T COG4674         187 AELLKSLAG-KHSILVVEHDM-GFVREIADKVTVLHEGSVLAEGSLDE  232 (249)
T ss_pred             HHHHHHHhc-CceEEEEeccH-HHHHHhhheeEEEeccceeecccHHH
Confidence            999999986 58999999996 58899999999999999999998766

>PLN03232 ABC transporter C family member; Provisional

Probab=99.97  E-value=4.8e-30  Score=316.16  Aligned_cols=176  Identities=20%  Similarity=0.302  Sum_probs=147.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+++|.|+++++     +|+|.+||.++++.     +++++||||++.+|+. |++|||.+..      .
T Consensus      1268 VG~SGSGKSTL~~lL~rl~~p~-----~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~ 1335 (1495)
T PLN03232       1268 VGRTGAGKSSMLNALFRIVELE-----KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------E 1335 (1495)
T ss_pred             ECCCCCCHHHHHHHHhCCCcCC-----CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------C
Confidence            6999999999999999999987     89999999998653     3569999999999987 9999997532      1


Q ss_pred             CCHHHHHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++    +.++++..++.       +-.||.+|+ ...+||||||||++|||||+++|+||+||||||+||+.+...|
T Consensus      1336 ~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~I 1410 (1495)
T PLN03232       1336 HNDAD----LWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410 (1495)
T ss_pred             CCHHH----HHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence            23333    44455554442       334677765 5678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|++.. +++|+|+++|+++ .+ ..||+|++|++|++++.|++++
T Consensus      1411 q~~L~~~~-~~~TvI~IAHRl~-ti-~~~DrIlVL~~G~ivE~Gt~~e 1455 (1495)
T PLN03232       1411 QRTIREEF-KSCTMLVIAHRLN-TI-IDCDKILVLSSGQVLEYDSPQE 1455 (1495)
T ss_pred             HHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence            99999874 4799999999974 44 4589999999999999999876

>PLN03130 ABC transporter C family member; Provisional

Probab=99.96  E-value=6.2e-30  Score=315.67  Aligned_cols=176  Identities=23%  Similarity=0.311  Sum_probs=148.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+++|.|+++++     +|+|.+||.++++.     ++++++|||++.+|+. |++|||.+..      .
T Consensus      1271 VGrSGSGKSTLl~lL~rl~~p~-----~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~ 1338 (1622)
T PLN03130       1271 VGRTGAGKSSMLNALFRIVELE-----RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------E 1338 (1622)
T ss_pred             ECCCCCCHHHHHHHHhCcCCCC-----CceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------C
Confidence            6999999999999999999987     89999999998754     3569999999999987 9999997642      1


Q ss_pred             CCHHHHHHHHHHHHHHcCC-------CccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++    +.++++..++       ..-.||.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|
T Consensus      1339 ~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I 1413 (1622)
T PLN03130       1339 HNDAD----LWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI 1413 (1622)
T ss_pred             CCHHH----HHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence            23333    4444444443       2345777775 5678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|++.. +++|+|+++|.++ .+ ..||||++|++|++++.|++++
T Consensus      1414 q~~I~~~~-~~~TvI~IAHRL~-tI-~~~DrIlVLd~G~IvE~Gt~~e 1458 (1622)
T PLN03130       1414 QKTIREEF-KSCTMLIIAHRLN-TI-IDCDRILVLDAGRVVEFDTPEN 1458 (1622)
T ss_pred             HHHHHHHC-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHH
Confidence            99999875 4799999999975 44 4589999999999999999877

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.96  E-value=1.8e-29  Score=260.31  Aligned_cols=191  Identities=26%  Similarity=0.354  Sum_probs=166.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQED--LFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~   69 (607)
                      +|.||||||-..+.+.|+++..+....+|+|.++|+++-..         ..+|++++|++  .+.|-.|+...+.-..+
T Consensus        42 VGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~  121 (534)
T COG4172          42 VGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLR  121 (534)
T ss_pred             EecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHH
Confidence            69999999999999999998866667799999999876321         24699999998  57787898888877666


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ++  +..++++.++++.++|+.+|+.+-...  -+.++++|||||||||.||+||+++|++||.||||+.||...+.+|+
T Consensus       122 ~H--rg~~~~~Ar~r~lelL~~VgI~~p~~r--l~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL  197 (534)
T COG4172         122 LH--RGLSRAAARARALELLELVGIPEPEKR--LDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQIL  197 (534)
T ss_pred             HH--hcccHHHHHHHHHHHHHHcCCCchhhh--hhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHH
Confidence            54  356778888999999999999754422  35689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++|++|. +.|.+++++|||. .-+.+++|||.+|.+|++++.|++++
T Consensus       198 ~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~~~t~~  244 (534)
T COG4172         198 DLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVETGTTET  244 (534)
T ss_pred             HHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeecCcHHH
Confidence            9999996 6699999999996 57889999999999999999998665

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.96  E-value=3.6e-29  Score=240.89  Aligned_cols=127  Identities=31%  Similarity=0.454  Sum_probs=112.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+|+|+|+++++     +|+|.++|..       ++|++|+..                           
T Consensus        31 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~-------i~~~~q~~~---------------------------   71 (177)
T cd03222          31 VGPNGTGKTTAVKILAGQLIPN-----GDNDEWDGIT-------PVYKPQYID---------------------------   71 (177)
T ss_pred             ECCCCChHHHHHHHHHcCCCCC-----CcEEEECCEE-------EEEEcccCC---------------------------
Confidence            5999999999999999999887     8999999853       789888532                           


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG-  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g-  159 (607)
                                                   ||||||||++||++|+.+|++++|||||+|||+.++..+.+.++++++++ 
T Consensus        72 -----------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~  122 (177)
T cd03222          72 -----------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGK  122 (177)
T ss_pred             -----------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCC
Confidence                                         99999999999999999999999999999999999999999999998765 


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCCeeeee--CCCCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYA--GPARD  196 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~--G~~~~  196 (607)
                      .|+|+++|++ ..+...+|++++|+++-.++.  |++..
T Consensus       123 ~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~  160 (177)
T cd03222         123 KTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKG  160 (177)
T ss_pred             CEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcc
Confidence            8999999996 467778999999988766654  55543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.96  E-value=3.8e-29  Score=281.99  Aligned_cols=165  Identities=27%  Similarity=0.355  Sum_probs=135.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-LFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +|||||||||||++|+|+++|+     +|+|.+++.      .++||++|+. .+++.+||+|++.+......   ....
T Consensus       356 ~G~NGsGKSTLl~~i~G~~~p~-----~G~i~~~~~------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~  421 (556)
T PRK11819        356 IGPNGAGKSTLFKMITGQEQPD-----SGTIKIGET------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR  421 (556)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCc------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc
Confidence            6999999999999999999887     899998542      2699999996 78889999999988653221   1111


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                        +..++++++.+|+.+.    ..++.+++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.  |
T Consensus       422 --~~~~~~~l~~~~l~~~----~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~  493 (556)
T PRK11819        422 --EIPSRAYVGRFNFKGG----DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G  493 (556)
T ss_pred             --HHHHHHHHHhCCCChh----HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C
Confidence              1234578999999521    1234577899999999999999999999999999999999999999999999873  4


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecC-Ceee
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTE-GKLV  189 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~-G~iv  189 (607)
                       |||++||++ ..+...||++++|++ |++.
T Consensus       494 -tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~  522 (556)
T PRK11819        494 -CAVVISHDR-WFLDRIATHILAFEGDSQVE  522 (556)
T ss_pred             -eEEEEECCH-HHHHHhCCEEEEEECCCeEE
Confidence             899999996 478888999999985 7776

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.96  E-value=4.3e-29  Score=281.38  Aligned_cols=165  Identities=27%  Similarity=0.356  Sum_probs=135.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-LFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +|||||||||||++|+|..+++     +|+|.+++.      .++||++|+. .+++.+||.|++.+......   ....
T Consensus       354 ~G~NGsGKSTLl~~l~G~~~p~-----~G~i~~~~~------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~  419 (552)
T TIGR03719       354 IGPNGAGKSTLFRMITGQEQPD-----SGTIKIGET------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR  419 (552)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCC-----CeEEEECCc------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc
Confidence            5999999999999999999887     899998542      2699999986 47888999999988653221   1111


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                        +..++++++.+|+.+.    ..++.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.   
T Consensus       420 --~~~~~~~l~~~~l~~~----~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---  490 (552)
T TIGR03719       420 --EVPSRAYVGRFNFKGS----DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---  490 (552)
T ss_pred             --hHHHHHHHHhCCCChh----HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---
Confidence              2235578999999531    1234567899999999999999999999999999999999999999999999983   


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecC-Ceee
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTE-GKLV  189 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~-G~iv  189 (607)
                      .|||++||++ ..+...||++++|++ |+++
T Consensus       491 ~~viivsHd~-~~~~~~~d~i~~l~~~~~~~  520 (552)
T TIGR03719       491 GCAVVISHDR-WFLDRIATHILAFEGDSHVE  520 (552)
T ss_pred             CeEEEEeCCH-HHHHHhCCEEEEEECCCeEE
Confidence            3899999996 477888999999986 5776

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.96  E-value=1.9e-29  Score=308.70  Aligned_cols=177  Identities=23%  Similarity=0.344  Sum_probs=141.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEEC-CeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHc-cC-
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVN-GKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAEL-QL-   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~-G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~-~~-   72 (607)
                      +||||||||||+++|+|+++|+     +|+|.++ |.+++..     ++++|||+|++.+|+. ||+||+.++... +. 
T Consensus       417 vG~SGsGKSTLl~lL~gl~~p~-----~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~  490 (1466)
T PTZ00265        417 VGESGCGKSTILKLIERLYDPT-----EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDL  490 (1466)
T ss_pred             ECCCCCCHHHHHHHHHHhccCC-----CCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCcccc
Confidence            6999999999999999999987     8999995 6766432     3459999999999985 999999986310 00 


Q ss_pred             -------CCC----------------------------------C-----CHHHHHHHHHHHHHHcCCC-------cccc
Q 007344           73 -------PEI----------------------------------L-----SVEERDEYVNSLLFKLGLV-------SCAD   99 (607)
Q Consensus        73 -------~~~----------------------------------~-----~~~~~~~~v~~~l~~lgL~-------~~~d   99 (607)
                             ...                                  .     .....++.+.++++.+++.       +..|
T Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~d  570 (1466)
T PTZ00265        491 EALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYE  570 (1466)
T ss_pred             chhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccC
Confidence                   000                                  0     0001124566677776654       3446


Q ss_pred             ccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCeEEEEecCChhHHHhhhc
Q 007344          100 SNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFD  178 (607)
Q Consensus       100 ~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D  178 (607)
                      |.+|. ....||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++++ +|+|+|+++|+++ .+ ..||
T Consensus       571 T~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD  647 (1466)
T PTZ00265        571 TLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-TI-RYAN  647 (1466)
T ss_pred             ceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCC
Confidence            77765 4788999999999999999999999999999999999999999999999975 6899999999975 44 6799


Q ss_pred             ceeeecCC
Q 007344          179 DIVLLTEG  186 (607)
Q Consensus       179 ~v~lL~~G  186 (607)
                      +|++|++|
T Consensus       648 ~Iivl~~g  655 (1466)
T PTZ00265        648 TIFVLSNR  655 (1466)
T ss_pred             EEEEEeCC
Confidence            99999886

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.96  E-value=2e-29  Score=311.16  Aligned_cols=176  Identities=21%  Similarity=0.306  Sum_probs=147.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+++|.|+++++     +|+|.+||.++++.     +++++||||++.+|+. |+||||....      .
T Consensus      1318 VGrTGsGKSTL~~lL~rl~~~~-----~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~ 1385 (1522)
T TIGR00957      1318 VGRTGAGKSSLTLGLFRINESA-----EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------Q 1385 (1522)
T ss_pred             ECCCCCCHHHHHHHHhcCccCC-----CCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------C
Confidence            6999999999999999999987     89999999998764     3569999999999997 9999996321      2


Q ss_pred             CCHHHHHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++    +.++++..++.       +-.|+.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|
T Consensus      1386 ~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~I 1460 (1522)
T TIGR00957      1386 YSDEE----VWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLI 1460 (1522)
T ss_pred             CCHHH----HHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence            23333    44555555543       345677765 5678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|++.. +++|+|+++|+++ . ...+|||++|++|++++.|++++
T Consensus      1461 q~~l~~~~-~~~TvI~IAHRl~-t-i~~~DrIlVld~G~IvE~G~~~e 1505 (1522)
T TIGR00957      1461 QSTIRTQF-EDCTVLTIAHRLN-T-IMDYTRVIVLDKGEVAEFGAPSN 1505 (1522)
T ss_pred             HHHHHHHc-CCCEEEEEecCHH-H-HHhCCEEEEEECCEEEEECCHHH
Confidence            99998864 4799999999974 3 44589999999999999999876

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=99.96  E-value=2e-29  Score=310.69  Aligned_cols=176  Identities=25%  Similarity=0.356  Sum_probs=148.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+++|.|+++++     +|+|.+||.++++.     +++++||||++.+|+. ||+|||....      .
T Consensus      1342 VGrTGSGKSTLl~lLlrl~~p~-----~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~ 1409 (1560)
T PTZ00243       1342 VGRTGSGKSTLLLTFMRMVEVC-----GGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------E 1409 (1560)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------C
Confidence            6999999999999999999987     89999999998653     3569999999999987 9999995421      2


Q ss_pred             CCHHHHHHHHHHHHHHcCCCc-------cccccccCCcCCCCCHHHHHHHHHHHHHhhC-CCeEEEeCCCCCCCHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVS-------CADSNVGDAKVRGISGGEKKRLSLACELIAS-PSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~-p~illLDEPtsGLD~~~~~~  147 (607)
                      .+.    +.+.++++..||.+       -.||.+|+ ....||||||||++|||||+++ |+||+||||||+||+.+...
T Consensus      1410 ~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~ 1484 (1560)
T PTZ00243       1410 ASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQ 1484 (1560)
T ss_pred             CCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHH
Confidence            233    34566666666643       35777775 5678999999999999999996 89999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       148 i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |.+.|++.. +++|+|+++|+++  ....||+|++|++|++++.|++++
T Consensus      1485 Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~e 1530 (1560)
T PTZ00243       1485 IQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRE 1530 (1560)
T ss_pred             HHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence            999999864 4799999999964  456689999999999999999876

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.96  E-value=7.7e-29  Score=238.38  Aligned_cols=142  Identities=30%  Similarity=0.370  Sum_probs=115.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||||+|.+    .     +|+|.++|......+.+++|++|                              
T Consensus        27 ~G~nG~GKSTLl~~il~----~-----~G~v~~~~~~~~~~~~~~~~~~q------------------------------   67 (176)
T cd03238          27 TGVSGSGKSTLVNEGLY----A-----SGKARLISFLPKFSRNKLIFIDQ------------------------------   67 (176)
T ss_pred             ECCCCCCHHHHHHHHhh----c-----CCcEEECCcccccccccEEEEhH------------------------------
Confidence            59999999999999964    2     68899988743222334788877                              


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIAS--PSVIYADEPTTGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~--p~illLDEPtsGLD~~~~~~i~~~L~~la~~  158 (607)
                           .+.++.++|...    ..+++++.||||||||++||++|+.+  |++++|||||+|||+.++..+.+.|++++++
T Consensus        68 -----~~~l~~~~L~~~----~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~  138 (176)
T cd03238          68 -----LQFLIDVGLGYL----TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL  138 (176)
T ss_pred             -----HHHHHHcCCCcc----ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence                 235677787532    12346788999999999999999999  9999999999999999999999999999878


Q ss_pred             CCeEEEEecCChhHHHhhhcceeeecCCeeeeeC
Q 007344          159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       159 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G  192 (607)
                      |+|||+++|++. .+ ..+|++++|.+|+..+.|
T Consensus       139 g~tvIivSH~~~-~~-~~~d~i~~l~~g~~~~~~  170 (176)
T cd03238         139 GNTVILIEHNLD-VL-SSADWIIDFGPGSGKSGG  170 (176)
T ss_pred             CCEEEEEeCCHH-HH-HhCCEEEEECCCCCCCCc
Confidence            999999999975 44 579999999776554433

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=6.5e-29  Score=283.70  Aligned_cols=167  Identities=30%  Similarity=0.482  Sum_probs=137.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED--LFFSQLTVRETLSLAAELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~   78 (607)
                      +||||||||||||+|+|..+|+     +|+|.+++.      .++||++|+.  .+.+..|+.+++..   .. +     
T Consensus       344 ~G~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~~------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~-~-----  403 (638)
T PRK10636        344 LGRNGAGKSTLIKLLAGELAPV-----SGEIGLAKG------IKLGYFAQHQLEFLRADESPLQHLAR---LA-P-----  403 (638)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CCeEEECCC------EEEEEecCcchhhCCccchHHHHHHH---hC-c-----
Confidence            6999999999999999999887     899999742      3699999974  35566788777531   11 1     


Q ss_pred             HHHHHHHHHHHHHcCCCc-cccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           79 EERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      ...++.+.++++.+++.. ..+     ++++.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++  
T Consensus       404 ~~~~~~~~~~L~~~~l~~~~~~-----~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--  476 (638)
T PRK10636        404 QELEQKLRDYLGGFGFQGDKVT-----EETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--  476 (638)
T ss_pred             hhhHHHHHHHHHHcCCChhHhc-----CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--
Confidence            123456889999999952 333     456789999999999999999999999999999999999999999999987  


Q ss_pred             cCCeEEEEecCChhHHHhhhcceeeecCCeee-eeCCCCC
Q 007344          158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPARD  196 (607)
Q Consensus       158 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv-~~G~~~~  196 (607)
                      .| |||++|||+ ..+..+||++++|++|+++ +.|+.++
T Consensus       477 ~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~  514 (638)
T PRK10636        477 EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLED  514 (638)
T ss_pred             CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHH
Confidence            34 999999995 5788899999999999997 7787554

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.96  E-value=8.9e-29  Score=304.63  Aligned_cols=175  Identities=25%  Similarity=0.346  Sum_probs=147.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+++|.|+.+ .     +|+|.+||.+++..     +++++||||++.+|+. ||||||....      .
T Consensus      1251 vGrSGsGKSTLl~lL~rl~~-~-----~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~ 1317 (1490)
T TIGR01271      1251 LGRTGSGKSTLLSALLRLLS-T-----EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------Q 1317 (1490)
T ss_pred             ECCCCCCHHHHHHHHhhhcC-C-----CcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------C
Confidence            59999999999999999985 3     79999999998753     3569999999999997 9999995421      1


Q ss_pred             CCHHHHHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+    ++.+.++++..+|.       +-.|+.+++ ...+||||||||++|||||+++|+||+||||||+||+.+...|
T Consensus      1318 ~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I 1392 (1490)
T TIGR01271      1318 WS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII 1392 (1490)
T ss_pred             CC----HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHH
Confidence            22    23466677777663       235677765 4568999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|++.. +++|||+++|.++  ....||+|++|++|++++.|++.+
T Consensus      1393 ~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~~ 1437 (1490)
T TIGR01271      1393 RKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQK 1437 (1490)
T ss_pred             HHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999864 4799999999974  344589999999999999998766

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.96  E-value=1.7e-28  Score=280.53  Aligned_cols=166  Identities=30%  Similarity=0.390  Sum_probs=137.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-LFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +||||||||||||+|+|.++|+     +|+|.+ |.+     .++||++|+. .+++.+||.|++.+.....   ...  
T Consensus       351 ~G~NGsGKSTLlk~l~G~~~p~-----~G~i~~-~~~-----~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--  414 (635)
T PRK11147        351 IGPNGCGKTTLLKLMLGQLQAD-----SGRIHC-GTK-----LEVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--  414 (635)
T ss_pred             ECCCCCcHHHHHHHHhCCCCCC-----CcEEEE-CCC-----cEEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--
Confidence            6999999999999999999887     899988 432     2699999985 5889999999998753211   011  


Q ss_pred             HHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344           80 ERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~  158 (607)
                      .....+.++++.+++. +..     ++.++.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++   
T Consensus       415 ~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---  486 (635)
T PRK11147        415 GRPRHVLGYLQDFLFHPKRA-----MTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---  486 (635)
T ss_pred             chHHHHHHHHHhcCCCHHHH-----hChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---
Confidence            1234578889999984 233     3456789999999999999999999999999999999999999999999876   


Q ss_pred             CCeEEEEecCChhHHHhhhcceeeec-CCeeeee
Q 007344          159 GHTVICSIHQPRGSVYFKFDDIVLLT-EGKLVYA  191 (607)
Q Consensus       159 g~tvi~~~H~p~~~i~~~~D~v~lL~-~G~iv~~  191 (607)
                      +.|||++|||. ..+...||++++++ +|++..+
T Consensus       487 ~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~  519 (635)
T PRK11147        487 QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRY  519 (635)
T ss_pred             CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEc
Confidence            45999999995 57888999999997 8998654

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=4.1e-28  Score=226.52  Aligned_cols=184  Identities=26%  Similarity=0.411  Sum_probs=161.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCC--CCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQED--LFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +|.||||||||.|+|+|+++|+     +|+|.+||+++.-.     .++|-+++||+  .+.|.+.+.+-|....++  .
T Consensus        45 IG~NGSGKSTLakMlaGmi~PT-----sG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~  117 (267)
T COG4167          45 IGENGSGKSTLAKMLAGMIEPT-----SGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--N  117 (267)
T ss_pred             EccCCCcHhHHHHHHhcccCCC-----CceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhh--c
Confidence            6999999999999999999998     89999999987532     24599999997  467778888877776554  4


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                      ..+..+.+++++.+.|+.+||-.    ...+-+++.||-||||||++||||+.+|+|++.||...+||...+.++++++-
T Consensus       118 T~~~~~~R~~~i~~TL~~VGL~P----dhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~L  193 (267)
T COG4167         118 TDLEPEQRRKQIFETLRMVGLLP----DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLML  193 (267)
T ss_pred             ccCChHHHHHHHHHHHHHhccCc----cccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHH
Confidence            56778888999999999999953    22355788999999999999999999999999999999999999999999999


Q ss_pred             HHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +|. +.|.+-|.++.+. ..+.++.|+|++|++|++++.|.+.+
T Consensus       194 eLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~t~~  236 (267)
T COG4167         194 ELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGSTAD  236 (267)
T ss_pred             HHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecCChhh
Confidence            997 5699999999884 68999999999999999999999877

>PRK13409 putative ATPase RIL; Provisional

Probab=99.96  E-value=1.7e-28  Score=276.91  Aligned_cols=162  Identities=28%  Similarity=0.422  Sum_probs=133.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEE-----------ECCeeCCCc-------cceEEEEccCCCCCCC---CC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLE-----------VNGKPSSNK-------AYKFAYVRQEDLFFSQ---LT   59 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~-----------~~G~~~~~~-------~~~i~yv~Q~~~l~~~---lT   59 (607)
                      +||||||||||||+|+|.++|+     +|+|.           ++|.++...       ..++++.+|.....+.   .|
T Consensus       105 vG~NGaGKSTLlkiL~G~l~p~-----~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~t  179 (590)
T PRK13409        105 LGPNGIGKTTAVKILSGELIPN-----LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGK  179 (590)
T ss_pred             ECCCCCCHHHHHHHHhCCccCC-----CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcch
Confidence            6999999999999999999987     79987           899775321       1235666664333332   29


Q ss_pred             HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 007344           60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTG  139 (607)
Q Consensus        60 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsG  139 (607)
                      |+|++...            +..++++++++.+||.+..|+     .+++|||||||||+||++|+.+|++|+|||||+|
T Consensus       180 v~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~-----~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~  242 (590)
T PRK13409        180 VRELLKKV------------DERGKLDEVVERLGLENILDR-----DISELSGGELQRVAIAAALLRDADFYFFDEPTSY  242 (590)
T ss_pred             HHHHHHhh------------hHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            99998631            123468899999999765544     5678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCC
Q 007344          140 LDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEG  186 (607)
Q Consensus       140 LD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G  186 (607)
                      ||+.++..+.+.|+++++ |+|||+++|++ ..+..++|++++|++|
T Consensus       243 LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        243 LDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE  287 (590)
T ss_pred             CCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence            999999999999999988 99999999996 4778889999999764

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.95  E-value=2.1e-28  Score=280.41  Aligned_cols=165  Identities=21%  Similarity=0.276  Sum_probs=132.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+|+|+|+.+++     +|+|.+++      +++++||+|++.+++. |++||+.+........  ..+.
T Consensus       484 vG~nGsGKSTLl~lL~Gl~~~~-----~G~i~~~~------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~  549 (659)
T TIGR00954       484 CGPNGCGKSSLFRILGELWPVY-----GGRLTKPA------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGL  549 (659)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CCeEeecC------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCC
Confidence            6999999999999999999876     79998764      3469999999998887 9999998754221000  0011


Q ss_pred             HHHHHHHHHHHcCCCcccccccc----CCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVG----DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg----~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      .++.++++++.+|+.+..+...|    ....+.||||||||++|||+|+++|++++|||||+|||+.++..+.+.+++  
T Consensus       550 ~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~--  627 (659)
T TIGR00954       550 SDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--  627 (659)
T ss_pred             CHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH--
Confidence            23457788999999765543221    113578999999999999999999999999999999999999999998876  


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeec
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                       .|+|+|+++|+++  ....+|++++|+
T Consensus       628 -~~~tvI~isH~~~--~~~~~d~il~l~  652 (659)
T TIGR00954       628 -FGITLFSVSHRKS--LWKYHEYLLYMD  652 (659)
T ss_pred             -cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence             3899999999975  346799999996

>PLN03073 ABC transporter F family; Provisional

Probab=99.95  E-value=5.7e-28  Score=277.54  Aligned_cols=169  Identities=25%  Similarity=0.405  Sum_probs=134.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||||+|+|.++|+     +|+|.+++.      .++||++|+.  ...+++.++.........+ ...   
T Consensus       541 vG~NGsGKSTLLk~L~Gll~p~-----~G~I~~~~~------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~---  603 (718)
T PLN03073        541 VGPNGIGKSTILKLISGELQPS-----SGTVFRSAK------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP---  603 (718)
T ss_pred             ECCCCCcHHHHHHHHhCCCCCC-----CceEEECCc------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC---
Confidence            6999999999999999999887     799998752      4699999985  3455666664332211111 111   


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH  160 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~  160 (607)
                       +++++++++.+|+.+    ...+..++.|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|++.  . .
T Consensus       604 -~~~i~~~L~~~gl~~----~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-g  675 (718)
T PLN03073        604 -EQKLRAHLGSFGVTG----NLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-G  675 (718)
T ss_pred             -HHHHHHHHHHCCCCh----HHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-C
Confidence             345788999999952    1223467889999999999999999999999999999999999999998888765  3 4


Q ss_pred             eEEEEecCChhHHHhhhcceeeecCCeee-eeCCCC
Q 007344          161 TVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPAR  195 (607)
Q Consensus       161 tvi~~~H~p~~~i~~~~D~v~lL~~G~iv-~~G~~~  195 (607)
                      |||++||++ ..+...||++++|++|+++ +.|+.+
T Consensus       676 tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~  710 (718)
T PLN03073        676 GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFH  710 (718)
T ss_pred             EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHH
Confidence            999999996 4788889999999999998 677543

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.95  E-value=4.8e-28  Score=225.89  Aligned_cols=113  Identities=38%  Similarity=0.555  Sum_probs=104.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+++|+|..++.     +|+|.++|.      +.++|++|                              
T Consensus        32 ~G~nGsGKStLl~~l~G~~~~~-----~G~i~~~~~------~~i~~~~~------------------------------   70 (144)
T cd03221          32 VGRNGAGKSTLLKLIAGELEPD-----EGIVTWGST------VKIGYFEQ------------------------------   70 (144)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCC-----ceEEEECCe------EEEEEEcc------------------------------
Confidence            5999999999999999999886     899999984      46999998                              


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH  160 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~  160 (607)
                                                   ||+||+||++||++|+.+|+++++||||+|||+.++..+.+.++++   ++
T Consensus        71 -----------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~  118 (144)
T cd03221          71 -----------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PG  118 (144)
T ss_pred             -----------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CC
Confidence                                         9999999999999999999999999999999999999999999987   47


Q ss_pred             eEEEEecCChhHHHhhhcceeeecCCe
Q 007344          161 TVICSIHQPRGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       161 tvi~~~H~p~~~i~~~~D~v~lL~~G~  187 (607)
                      |+++++|++ ..+...+|++++|++|+
T Consensus       119 til~~th~~-~~~~~~~d~v~~l~~g~  144 (144)
T cd03221         119 TVILVSHDR-YFLDQVATKIIELEDGK  144 (144)
T ss_pred             EEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence            999999996 46778899999999885

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.6e-28  Score=228.04  Aligned_cols=155  Identities=28%  Similarity=0.396  Sum_probs=135.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc----ceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA----YKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~----~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      .||||||||||||+|+|+.+|+     +|+|.++|.+++..+    +.+-|+-.++-+=+.+||.|||.|-.+....   
T Consensus        34 ~G~NG~GKTtLLRilaGLl~p~-----~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~---  105 (209)
T COG4133          34 TGPNGAGKTTLLRILAGLLRPD-----AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS---  105 (209)
T ss_pred             ECCCCCcHHHHHHHHHcccCCC-----CCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC---
Confidence            3999999999999999999998     899999999886653    3477888888888999999999998776432   


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                         .....+.+.++.+||....|.     +++.||-||||||+|||-+++.+++.|||||+++||......+-.++..-+
T Consensus       106 ---~~~~~i~~Al~~vgL~g~~dl-----p~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~  177 (209)
T COG4133         106 ---GNAATIWEALAQVGLAGLEDL-----PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA  177 (209)
T ss_pred             ---CchhhHHHHHHHcCccccccc-----chhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHh
Confidence               113457889999999766655     456799999999999999999999999999999999999999999999989


Q ss_pred             hcCCeEEEEecCChh
Q 007344          157 QDGHTVICSIHQPRG  171 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~  171 (607)
                      .+|..||.+||||..
T Consensus       178 ~~GGiVllttHq~l~  192 (209)
T COG4133         178 AQGGIVLLTTHQPLP  192 (209)
T ss_pred             cCCCEEEEecCCccC
Confidence            999999999999864

>PLN03130 ABC transporter C family member; Provisional

Probab=99.95  E-value=3.9e-28  Score=299.79  Aligned_cols=168  Identities=26%  Similarity=0.422  Sum_probs=138.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccc-eEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLS-GLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~-G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +||||||||||+++|.|.+++.     + |+|.+.        .+++||+|++.+++. |++||+.|+..      .++ 
T Consensus       649 vG~sGSGKSTLl~lLlG~~~~~-----~GG~I~l~--------~~Iayv~Q~p~Lfng-TIreNI~fg~~------~d~-  707 (1622)
T PLN03130        649 VGSTGEGKTSLISAMLGELPPR-----SDASVVIR--------GTVAYVPQVSWIFNA-TVRDNILFGSP------FDP-  707 (1622)
T ss_pred             ECCCCCCHHHHHHHHHHhhccC-----CCceEEEc--------CeEEEEcCccccCCC-CHHHHHhCCCc------ccH-
Confidence            5999999999999999999886     7 898764        369999999999986 99999998642      122 


Q ss_pred             HHHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-H
Q 007344           80 ERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME-A  151 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~-~  151 (607)
                         ++.+++++..+|.       +-.+|.+|++ ...||||||||++||||+.++|+|++||||||+||+.+++.+++ .
T Consensus       708 ---e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~  783 (1622)
T PLN03130        708 ---ERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKC  783 (1622)
T ss_pred             ---HHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHH
Confidence               3344555555543       3446888864 67899999999999999999999999999999999999999875 5


Q ss_pred             HHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       152 L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++.+. +|+|+|++||++.  ....+|+|++|++|++++.|+.++
T Consensus       784 l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~e  825 (1622)
T PLN03130        784 IKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEE  825 (1622)
T ss_pred             hhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHH
Confidence            55543 5899999999974  456799999999999999998765

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.95  E-value=1.4e-27  Score=234.34  Aligned_cols=182  Identities=27%  Similarity=0.375  Sum_probs=159.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +|+||||||||||+|+|.++|+     +|+|.++|+-..-..-..|       +-|++|.+||+.+.+.+.   .+++++
T Consensus        59 iG~NGaGKSTLlkliaGi~~Pt-----~G~v~v~G~v~~li~lg~G-------f~pelTGreNi~l~~~~~---G~~~~e  123 (249)
T COG1134          59 IGHNGAGKSTLLKLIAGIYKPT-----SGKVKVTGKVAPLIELGAG-------FDPELTGRENIYLRGLIL---GLTRKE  123 (249)
T ss_pred             ECCCCCcHHHHHHHHhCccCCC-----CceEEEcceEehhhhcccC-------CCcccchHHHHHHHHHHh---CccHHH
Confidence            6999999999999999999998     8999999975432222233       346799999999987764   467899


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH  160 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~  160 (607)
                      .+++++++++.-+|.+..|.     +++.+|-||+-|++.|.+...+|+||++||-.+--|+.-+++..+.++++.++++
T Consensus       124 i~~~~~eIieFaELG~fi~~-----PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~  198 (249)
T COG1134         124 IDEKVDEIIEFAELGDFIDQ-----PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNK  198 (249)
T ss_pred             HHHHHHHHHHHHHHHHHhhC-----chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999766655     5678999999999999999999999999999999999999999999999988889


Q ss_pred             eEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhhh
Q 007344          161 TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSR  204 (607)
Q Consensus       161 tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~  204 (607)
                      |+|+++|++ ..+.+.||++++|++|++.+.|.+++ +.++++.
T Consensus       199 tiv~VSHd~-~~I~~~Cd~~i~l~~G~i~~~G~~~~-vi~~Y~~  240 (249)
T COG1134         199 TIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEGSPEE-VIPAYEE  240 (249)
T ss_pred             EEEEEECCH-HHHHHhcCeeEEEeCCEEEEcCCHHH-HHHHHHH
Confidence            999999996 58999999999999999999999998 5555543

>PLN03232 ABC transporter C family member; Provisional

Probab=99.95  E-value=5.6e-28  Score=297.97  Aligned_cols=169  Identities=26%  Similarity=0.386  Sum_probs=136.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+++|.|.+++.     +|.+.       ..+..++||+|++.+++. |++||+.|+..      .+++ 
T Consensus       649 vG~sGSGKSTLl~lLlG~~~~~-----~G~i~-------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~~~e-  708 (1495)
T PLN03232        649 VGGTGEGKTSLISAMLGELSHA-----ETSSV-------VIRGSVAYVPQVSWIFNA-TVRENILFGSD------FESE-  708 (1495)
T ss_pred             ECCCCCcHHHHHHHHhCCCccc-----CCCEE-------EecCcEEEEcCccccccc-cHHHHhhcCCc------cCHH-
Confidence            5999999999999999999886     55542       123469999999999986 99999998742      2222 


Q ss_pred             HHHHHHHHHHHcCC-------CccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-H
Q 007344           81 RDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA-L  152 (607)
Q Consensus        81 ~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~-L  152 (607)
                         +.+++++..+|       .+-.+|.+|++ ..+||||||||++||||++++|+|++||||||+||+.++..+++. +
T Consensus       709 ---~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l  784 (1495)
T PLN03232        709 ---RYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCM  784 (1495)
T ss_pred             ---HHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHh
Confidence               34444444443       34456888874 678999999999999999999999999999999999999999775 4


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.+ .+|+|+|++||+++  ....+|+|++|++|++++.|+.++
T Consensus       785 ~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~e  825 (1495)
T PLN03232        785 KDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAE  825 (1495)
T ss_pred             hhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHH
Confidence            443 46899999999974  456799999999999999998765

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=273.57  Aligned_cols=173  Identities=27%  Similarity=0.341  Sum_probs=133.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHH------------
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAA------------   68 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~------------   68 (607)
                      +||||||||||||+|+|.++|+     +|+|.++|.      .+++|++|+...+ ..|+.+.+.-..            
T Consensus        33 vG~NGsGKSTLLkiL~G~~~pd-----~G~I~~~~~------~~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~  100 (638)
T PRK10636         33 VGKNGCGKSTLLALLKNEISAD-----GGSYTFPGN------WQLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHD  100 (638)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEecCC------CEEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHH
Confidence            6999999999999999998887     899999874      2489999865333 246555442110            


Q ss_pred             -----------HccC-CCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 007344           69 -----------ELQL-PEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADE  135 (607)
Q Consensus        69 -----------~~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDE  135 (607)
                                 .+.. .......+.+.+++++++.+|+. +..+     +.+..|||||||||+||++|+.+|++|||||
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~-----~~~~~LSgGerqRv~LA~aL~~~P~lLLLDE  175 (638)
T PRK10636        101 ANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLE-----RPVSDFSGGWRMRLNLAQALICRSDLLLLDE  175 (638)
T ss_pred             HhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhc-----CchhhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence                       0000 00000112345788999999995 3333     4567899999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeee-eeCCC
Q 007344          136 PTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPA  194 (607)
Q Consensus       136 PtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv-~~G~~  194 (607)
                      ||+|||+.+...+.+.|+++   +.|||+++|+. ..+...||++++|++|+++ |.|+.
T Consensus       176 Ptn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~  231 (638)
T PRK10636        176 PTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKIIHIEQQSLFEYTGNY  231 (638)
T ss_pred             CCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEEEEEeCCEEEEecCCH
Confidence            99999999999999998875   56999999995 5788899999999999996 55643

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.95  E-value=3.8e-29  Score=261.88  Aligned_cols=181  Identities=27%  Similarity=0.427  Sum_probs=149.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||+||||++++|....+.+     +|.|.+||++++.-     +..||.||||..+|++ |+..|+.|+..     .
T Consensus       570 VG~SGaGKSTimRlLfRffdv~-----sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~-----~  638 (790)
T KOG0056|consen  570 VGPSGAGKSTIMRLLFRFFDVN-----SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKP-----S  638 (790)
T ss_pred             ECCCCCchhHHHHHHHHHhhcc-----CceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCC-----C
Confidence            6999999999999999998776     89999999998653     3459999999999987 99999988632     2


Q ss_pred             CCHHHHHHHH--HHHH-HHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           76 LSVEERDEYV--NSLL-FKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        76 ~~~~~~~~~v--~~~l-~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                      .+.++..+.+  ..+= +.++..+-.+|.+|++ .-.|||||||||+|||+++++|.+++|||.||.||..+.+.|-..|
T Consensus       639 AsneevyaAAkAA~IHdrIl~fPegY~t~VGER-GLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL  717 (790)
T KOG0056|consen  639 ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGER-GLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAAL  717 (790)
T ss_pred             CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhc-ccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHH
Confidence            2334333221  1121 2367888899999975 4459999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+++. |+|.|++.|..+ .+. .+|.|+++++|+|++.|..++
T Consensus       718 ~rlca-~RTtIVvAHRLS-Tiv-nAD~ILvi~~G~IvErG~Hee  758 (790)
T KOG0056|consen  718 ARLCA-NRTTIVVAHRLS-TIV-NADLILVISNGRIVERGRHEE  758 (790)
T ss_pred             HHHhc-CCceEEEeeeeh-hee-cccEEEEEeCCeEeecCcHHH
Confidence            99986 688999999865 343 479999999999999997655

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.95  E-value=5.1e-28  Score=219.34  Aligned_cols=158  Identities=28%  Similarity=0.422  Sum_probs=136.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      ||||||||||||..+.|.+.+.  ..++|++.+|++.++..   .+++|..+||+.+||.++|.+||.|+.    |....
T Consensus        34 MGPSGcGKSTLls~~~G~La~~--F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~K  107 (213)
T COG4136          34 MGPSGCGKSTLLSWMIGALAGQ--FSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL----PATLK  107 (213)
T ss_pred             ECCCCccHHHHHHHHHhhcccC--cceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEec----Ccccc
Confidence            7999999999999999998765  35799999999987653   467999999999999999999999975    33444


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHH
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL-RQLA  156 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L-~~la  156 (607)
                      -+.+++.++..+++.||....+.     .+..||||||-||++-|+|+..|+.++||||+|.||..-+.++.+.. .+.+
T Consensus       108 G~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r  182 (213)
T COG4136         108 GNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVR  182 (213)
T ss_pred             cHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHH
Confidence            45677789999999999765543     46789999999999999999999999999999999999999998865 4455


Q ss_pred             hcCCeEEEEecCC
Q 007344          157 QDGHTVICSIHQP  169 (607)
Q Consensus       157 ~~g~tvi~~~H~p  169 (607)
                      ..|..+|.+|||.
T Consensus       183 ~agiPtv~VTHD~  195 (213)
T COG4136         183 AAGIPTVQVTHDL  195 (213)
T ss_pred             hcCCCeEEEeccc
Confidence            7799999999995

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.95  E-value=2.9e-27  Score=270.40  Aligned_cols=172  Identities=28%  Similarity=0.391  Sum_probs=132.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHH-------------
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLA-------------   67 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~-------------   67 (607)
                      +||||||||||||+|+|..+++     +|+|.++|..      .++|++|.+......||.+++..+             
T Consensus        35 vG~NGsGKSTLLriiaG~~~p~-----~G~I~~~~~~------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  103 (635)
T PRK11147         35 VGRNGAGKSTLMKILNGEVLLD-----DGRIIYEQDL------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHD  103 (635)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCC-----CeEEEeCCCC------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHH
Confidence            6999999999999999999887     8999998631      367888765433334666554211             


Q ss_pred             -----------------HHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCC
Q 007344           68 -----------------AELQLP-EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS  129 (607)
Q Consensus        68 -----------------~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~  129 (607)
                                       ..+... ......+.+.+++++++.+|+..       ++.+..|||||||||+||++|+.+|+
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-------~~~~~~LSgGekqRv~LAraL~~~P~  176 (635)
T PRK11147        104 ISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP-------DAALSSLSGGWLRKAALGRALVSNPD  176 (635)
T ss_pred             HHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC-------CCchhhcCHHHHHHHHHHHHHhcCCC
Confidence                             000000 00000123456889999999941       45678899999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeee-eeCCC
Q 007344          130 VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPA  194 (607)
Q Consensus       130 illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv-~~G~~  194 (607)
                      ||||||||+|||+.+...+.+.|+++.   .|||+++|++ ..+...||+++.|++|+++ |.|+.
T Consensus       177 lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~  238 (635)
T PRK11147        177 VLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDR-SFIRNMATRIVDLDRGKLVSYPGNY  238 (635)
T ss_pred             EEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCH-HHHHHhcCeEEEEECCEEEEecCCH
Confidence            999999999999999999999999873   5999999995 5788889999999999997 45654

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.95  E-value=2.7e-27  Score=291.59  Aligned_cols=170  Identities=24%  Similarity=0.386  Sum_probs=137.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +|||||||||||++|+|..++.     +|+|.++|        +++||+|++.+++. ||+||+.|+...      ..+.
T Consensus       458 ~G~~GsGKSTLl~~l~G~~~~~-----~G~i~~~g--------~iayv~Q~~~l~~~-Ti~eNI~~g~~~------~~~~  517 (1490)
T TIGR01271       458 AGSTGSGKSSLLMMIMGELEPS-----EGKIKHSG--------RISFSPQTSWIMPG-TIKDNIIFGLSY------DEYR  517 (1490)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECC--------EEEEEeCCCccCCc-cHHHHHHhcccc------chHH
Confidence            5999999999999999999987     89999998        49999999999885 999999987421      1111


Q ss_pred             HHHH-----HHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-HHH
Q 007344           81 RDEY-----VNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA-LRQ  154 (607)
Q Consensus        81 ~~~~-----v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~-L~~  154 (607)
                      .++.     .++.++.+.  +..+|.+|. ....|||||||||+||||++.+|++++|||||+|||+.++..+++. +++
T Consensus       518 ~~~~~~~~~L~~~l~~l~--~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~  594 (1490)
T TIGR01271       518 YTSVIKACQLEEDIALFP--EKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK  594 (1490)
T ss_pred             HHHHHHHHhHHHHHHhcc--ccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            1111     122233322  223456665 4789999999999999999999999999999999999999999984 666


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +. +|+|+|++||++. .+ ..+|++++|++|+++..|+.++
T Consensus       595 ~~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~  633 (1490)
T TIGR01271       595 LM-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSE  633 (1490)
T ss_pred             Hh-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHH
Confidence            64 4899999999975 34 4599999999999999998765

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.95  E-value=1.5e-27  Score=294.55  Aligned_cols=173  Identities=25%  Similarity=0.415  Sum_probs=138.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +|||||||||||++|+|.+++.     +|+|.++|        +++||+|++.+++ .||+||+.|+..      .+.++
T Consensus       670 vG~~GsGKSTLl~~l~g~~~~~-----~G~i~~~g--------~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~  729 (1522)
T TIGR00957       670 VGQVGCGKSSLLSALLAEMDKV-----EGHVHMKG--------SVAYVPQQAWIQN-DSLRENILFGKA------LNEKY  729 (1522)
T ss_pred             ECCCCCCHHHHHHHHhCCCccC-----CcEEEECC--------EEEEEcCCccccC-CcHHHHhhcCCc------cCHHH
Confidence            5999999999999999999887     89999987        4999999998875 599999998632      12222


Q ss_pred             HHHHHH--HHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH--
Q 007344           81 RDEYVN--SLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL--  155 (607)
Q Consensus        81 ~~~~v~--~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l--  155 (607)
                      .++.++  .+.+.++.. +-.+|.+|+ ...+||||||||++||||++.+|++++||||||+||+.++..+++.+.+.  
T Consensus       730 ~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~  808 (1522)
T TIGR00957       730 YQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEG  808 (1522)
T ss_pred             HHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh
Confidence            222111  122333332 233466665 57889999999999999999999999999999999999999999999754  


Q ss_pred             HhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       156 a~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ..+|+|+|++||++. .+ ..+|+|++|++|+++..|+.++
T Consensus       809 ~~~~~tvIlvTH~~~-~l-~~~D~ii~l~~G~i~~~g~~~~  847 (1522)
T TIGR00957       809 VLKNKTRILVTHGIS-YL-PQVDVIIVMSGGKISEMGSYQE  847 (1522)
T ss_pred             hhcCCEEEEEeCChh-hh-hhCCEEEEecCCeEEeeCCHHH
Confidence            245799999999975 34 4599999999999999998765

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.95  E-value=4.5e-27  Score=222.15  Aligned_cols=122  Identities=41%  Similarity=0.733  Sum_probs=110.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+++|+|.+++.     +|+|.++|.+....     .+.++|++|                         
T Consensus        31 ~G~nGsGKStll~~l~g~~~~~-----~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------------------------   80 (157)
T cd00267          31 VGPNGSGKSTLLRAIAGLLKPT-----SGEILIDGKDIAKLPLEELRRRIGYVPQ-------------------------   80 (157)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ccEEEECCEEcccCCHHHHHhceEEEee-------------------------
Confidence            5999999999999999999876     89999999876542     245889888                         


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                                                        |||||+||++||++++.+|++++|||||+|||..++..+.+.++++
T Consensus        81 ----------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~  126 (157)
T cd00267          81 ----------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL  126 (157)
T ss_pred             ----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence                                              9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344          156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       156 a~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  187 (607)
                      ++.++|+++++|++ ..+...||+++++++|+
T Consensus       127 ~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~  157 (157)
T cd00267         127 AEEGRTVIIVTHDP-ELAELAADRVIVLKDGK  157 (157)
T ss_pred             HHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence            87789999999996 46777789999999875

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.6e-26  Score=214.30  Aligned_cols=181  Identities=25%  Similarity=0.394  Sum_probs=141.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCe---eCC-----Cc-cc-----eEEEEccCCC--CC----CCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK---PSS-----NK-AY-----KFAYVRQEDL--FF----SQLTV   60 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~---~~~-----~~-~~-----~i~yv~Q~~~--l~----~~lTV   60 (607)
                      +|.|||||||||+||++++.|+     .|+|.+.-.   +.+     +. ++     ..|+|.|++.  +-    ..-.+
T Consensus        38 VGESGSGKtTLL~~is~rl~p~-----~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~Ni  112 (258)
T COG4107          38 VGESGSGKTTLLKCISGRLTPD-----AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNI  112 (258)
T ss_pred             EecCCCcHHhHHHHHhcccCCC-----CCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCcc
Confidence            5999999999999999999998     799988643   221     11 11     2799999863  22    22234


Q ss_pred             HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 007344           61 RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGL  140 (607)
Q Consensus        61 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGL  140 (607)
                      .|-++-...      .....+++.+.++|+++.+...    --+..++..|||+|||+.|||-|++.|++.|+||||-||
T Consensus       113 GERlma~G~------RHYG~iR~~a~~WL~~VEI~~~----RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGL  182 (258)
T COG4107         113 GERLMAIGA------RHYGNIRAEAQDWLEEVEIDLD----RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL  182 (258)
T ss_pred             chhHHhhhh------hhhhhHHHHHHHHHHhcccCcc----cccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCc
Confidence            444432211      1224456678889999988532    224578999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCc
Q 007344          141 DAFQAEKVMEALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE  197 (607)
Q Consensus       141 D~~~~~~i~~~L~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~  197 (607)
                      |...+..++++++.|. +-|.+++++|||. .-+.-++||+++|++|++++.|-++.+
T Consensus       183 DVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk~g~vve~GLTDrv  239 (258)
T COG4107         183 DVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMKQGQVVESGLTDRV  239 (258)
T ss_pred             chhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeecCCCEecccccccc
Confidence            9999999999999997 5688999999995 456677999999999999999988763

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=8.8e-28  Score=249.35  Aligned_cols=179  Identities=26%  Similarity=0.477  Sum_probs=148.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||+||||++++|-..+++.     +|.|.++|+++...     ++-||.||||..||.+ |...|+.++..     .
T Consensus       295 Vg~SG~gKsTI~rllfRFyD~~-----sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~-----~  363 (497)
T COG5265         295 VGESGAGKSTILRLLFRFYDVN-----SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRP-----D  363 (497)
T ss_pred             EeCCCCcHHHHHHHHHHHhCCc-----CceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCc-----c
Confidence            5999999999999999999887     89999999987653     2449999999999886 99999988642     2


Q ss_pred             CCHHHHHHH-----HHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           76 LSVEERDEY-----VNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        76 ~~~~~~~~~-----v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      .+.+++.+.     +...++.  +.+..|+.||.+. -.|||||||||+|||+++++|+||++||.||.||..+.++|..
T Consensus       364 at~eev~aaa~~aqi~~fi~~--lP~gy~t~Vgerg-lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~  440 (497)
T COG5265         364 ATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGERG-LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA  440 (497)
T ss_pred             ccHHHHHHHHHHhhhhHHHHh--Cchhhhcccchhe-eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH
Confidence            344444332     2333433  4566789998754 4599999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .|++.+ .|+|.+++.|..+ .+. -+|.|++|++|++++.|..++
T Consensus       441 ~l~~~~-~~rttlviahrls-ti~-~adeiivl~~g~i~erg~h~~  483 (497)
T COG5265         441 ALREVS-AGRTTLVIAHRLS-TII-DADEIIVLDNGRIVERGTHEE  483 (497)
T ss_pred             HHHHHh-CCCeEEEEeehhh-hcc-CCceEEEeeCCEEEecCcHHH
Confidence            999987 5899999999865 344 479999999999999998655

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.94  E-value=1.1e-26  Score=256.72  Aligned_cols=171  Identities=32%  Similarity=0.422  Sum_probs=139.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHcc---------
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQ---------   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~---------   71 (607)
                      +|+||||||||||+|+|...++     +|+|...+      ..+++|++|+....+..||.+.+.-+..-.         
T Consensus        35 vG~NGaGKSTLLkilaG~~~~~-----~G~i~~~~------~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~  103 (530)
T COG0488          35 VGRNGAGKSTLLKILAGELEPD-----SGEVTRPK------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEE  103 (530)
T ss_pred             ECCCCCCHHHHHHHHcCCCcCC-----CCeEeecC------CceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHH
Confidence            6999999999999999999887     89987653      246999999999999999999886653210         


Q ss_pred             ----CCCC--------------CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 007344           72 ----LPEI--------------LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYA  133 (607)
Q Consensus        72 ----~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illL  133 (607)
                          ++..              ...-+.+.+++.++..+|+.+.      ++.+++||||||.||+||++|+.+|++|+|
T Consensus       104 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~------~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLL  177 (530)
T COG0488         104 AYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE------DRPVSSLSGGWRRRVALARALLEEPDLLLL  177 (530)
T ss_pred             HHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc------cCchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence                0000              0001123567888998998544      445678999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeee-eeC
Q 007344          134 DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAG  192 (607)
Q Consensus       134 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv-~~G  192 (607)
                      ||||++||..+...+-+.|++.  .| |+|++||| +..+-..|++|+-++.|++. |.|
T Consensus       178 DEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~t~I~~ld~g~l~~y~G  233 (530)
T COG0488         178 DEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVATHILELDRGKLTPYKG  233 (530)
T ss_pred             cCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHhhheEEecCCceeEecC
Confidence            9999999999999999999854  46 99999999 88999999999999999875 444

>PTZ00243 ABC transporter; Provisional

Probab=99.94  E-value=1.2e-26  Score=286.32  Aligned_cols=169  Identities=33%  Similarity=0.473  Sum_probs=133.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +|||||||||||++|+|.++++     +|+|.++        +++|||+|++.+++ .||+||+.|....      ..+.
T Consensus       692 iG~nGsGKSTLL~~i~G~~~~~-----~G~i~~~--------~~i~yv~Q~~~l~~-~Tv~enI~~~~~~------~~~~  751 (1560)
T PTZ00243        692 LGATGSGKSTLLQSLLSQFEIS-----EGRVWAE--------RSIAYVPQQAWIMN-ATVRGNILFFDEE------DAAR  751 (1560)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCC-----CcEEEEC--------CeEEEEeCCCccCC-CcHHHHHHcCChh------hHHH
Confidence            6999999999999999999887     7999864        36999999998875 6999999985211      1111


Q ss_pred             HH-----HHHHHHHHHc--CCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           81 RD-----EYVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        81 ~~-----~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                      .+     ..+++.++.+  |+    ++.+|. +...|||||||||+|||||+.+|++++|||||++||+.++..+++.+.
T Consensus       752 ~~~~~~~~~l~~~l~~l~~g~----~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~  826 (1560)
T PTZ00243        752 LADAVRVSQLEADLAQLGGGL----ETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF  826 (1560)
T ss_pred             HHHHHHHhhhHHHHHHhhccc----hHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence            11     1233445554  44    345554 578999999999999999999999999999999999999999987543


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ....+|+|+|++||++. .+ ..+|++++|++|++++.|+.++
T Consensus       827 ~~~~~~~TvIlvTH~~~-~~-~~ad~ii~l~~G~i~~~G~~~~  867 (1560)
T PTZ00243        827 LGALAGKTRVLATHQVH-VV-PRADYVVALGDGRVEFSGSSAD  867 (1560)
T ss_pred             HHhhCCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEecCHHH
Confidence            22335899999999975 33 5699999999999999998665

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.94  E-value=7.3e-26  Score=230.42  Aligned_cols=135  Identities=28%  Similarity=0.344  Sum_probs=113.0

Q ss_pred             EEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHH
Q 007344           45 FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACEL  124 (607)
Q Consensus        45 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL  124 (607)
                      +.|..++...+..+||.|++.|.....         ..+++.++++.+||.+.    ..++.++.||||||||+.||++|
T Consensus       118 ~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~~l----~l~~~~~~LSgGe~QRl~LAraL  184 (261)
T cd03271         118 VRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLGYI----KLGQPATTLSGGEAQRIKLAKEL  184 (261)
T ss_pred             cCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCchh----hhcCccccCCHHHHHHHHHHHHH
Confidence            446666666677899999999986542         12356789999999542    12446778999999999999999


Q ss_pred             hhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCC
Q 007344          125 IAS---PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPA  194 (607)
Q Consensus       125 ~~~---p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~  194 (607)
                      +.+   |++++|||||+|||+.....+.+.|++++++|.|||+++|++. .+ ..+|+++.|      ++|++++.|++
T Consensus       185 ~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         185 SKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-VI-KCADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             hcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence            996   7999999999999999999999999999988999999999975 44 569999999      89999999874

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.93  E-value=4e-24  Score=253.25  Aligned_cols=169  Identities=30%  Similarity=0.473  Sum_probs=141.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||-|||||+||.+|.|..+..     +|+|.++|.        ++||+|++-+++. |||||+.|+...      +++ 
T Consensus       553 vG~vGsGKSSLL~AiLGEm~~~-----sG~v~v~gs--------iaYv~Q~pWI~ng-TvreNILFG~~~------d~~-  611 (1381)
T KOG0054|consen  553 VGPVGSGKSSLLSAILGEMPKL-----SGSVAVNGS--------VAYVPQQPWIQNG-TVRENILFGSPY------DEE-  611 (1381)
T ss_pred             ECCCCCCHHHHHHHHhcCcccc-----cceEEEcCe--------EEEeccccHhhCC-cHHHhhhcCccc------cHH-
Confidence            5999999999999999998765     899999985        8999999998886 999999997543      222 


Q ss_pred             HHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           81 RDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                         +-+++++...|.       +.-.|.+|+ +.-+||||||||+++|||+-++++|++||.|.|.+|+.....+++..-
T Consensus       612 ---rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE-rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci  687 (1381)
T KOG0054|consen  612 ---RYDKVIKACALKKDLEILPFGDLTEIGE-RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECI  687 (1381)
T ss_pred             ---HHHHHHHHccCHhHHhhcCCCCcceecC-CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHH
Confidence               233344433332       334467776 567899999999999999999999999999999999999999988665


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +..-+++|+|++|||.  +....+|.|++|++|+++..|+.++
T Consensus       688 ~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~e  728 (1381)
T KOG0054|consen  688 RGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEE  728 (1381)
T ss_pred             HhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHH
Confidence            5555689999999984  4667799999999999999999877

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.93  E-value=1e-24  Score=218.55  Aligned_cols=101  Identities=26%  Similarity=0.427  Sum_probs=89.3

Q ss_pred             HHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEE
Q 007344           86 NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP--SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI  163 (607)
Q Consensus        86 ~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p--~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi  163 (607)
                      .+.++.+||.+.    ..+.+++.|||||||||+||++|+.+|  ++++|||||+|||+.++..+.+.|++++++|.|+|
T Consensus       118 ~~~l~~~~l~~~----~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii  193 (226)
T cd03270         118 LGFLVDVGLGYL----TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVL  193 (226)
T ss_pred             HHHHHHCCCCcc----cccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            468899999531    234567899999999999999999998  59999999999999999999999999988899999


Q ss_pred             EEecCChhHHHhhhcceeee------cCCeeeeeC
Q 007344          164 CSIHQPRGSVYFKFDDIVLL------TEGKLVYAG  192 (607)
Q Consensus       164 ~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G  192 (607)
                      +++|++. .+ ..||++++|      ++|+++++|
T Consensus       194 ~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         194 VVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             EEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence            9999975 44 589999999      999999876

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.92  E-value=1.5e-25  Score=219.96  Aligned_cols=152  Identities=17%  Similarity=0.181  Sum_probs=116.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCC----CccceEEEECCeeCCCc--cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPR----LHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~----~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+++|+|..++...    ....|++.++|++....  .++++||+|++..+          |.  ..   
T Consensus        28 ~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~----------~~--~~---   92 (197)
T cd03278          28 VGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR----------YS--II---   92 (197)
T ss_pred             ECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----------ee--EE---
Confidence            599999999999999998754311    12245788888765332  35699999998665          11  00   


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI----ASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~----~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                            ..++++++++.   .+..     +..++.||||||||++||++|+    .+|++++|||||+|||+.....+.+
T Consensus        93 ------~~~~~~~~l~~---~~~~-----~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~  158 (197)
T cd03278          93 ------SQGDVSEIIEA---PGKK-----VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR  158 (197)
T ss_pred             ------ehhhHHHHHhC---CCcc-----ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHH
Confidence                  02356666666   2222     3467789999999999999997    4669999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhhhcceeeec
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                      .|+++++ +.|||+++|++. . ...+|+++.+.
T Consensus       159 ~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~  189 (197)
T cd03278         159 LLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVT  189 (197)
T ss_pred             HHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEE
Confidence            9999976 689999999975 3 46799999995

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.92  E-value=2e-26  Score=213.85  Aligned_cols=177  Identities=30%  Similarity=0.425  Sum_probs=148.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|||||||||||-.++|+++.      +|+|.++|.++...     .+..+|..|+..-...+-|...|...    .|  
T Consensus        31 iGPNGaGKSTLLA~lAGm~~~------sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~----qP--   98 (248)
T COG4138          31 VGPNGAGKSTLLARMAGMTSG------SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH----QP--   98 (248)
T ss_pred             ECCCCccHHHHHHHHhCCCCC------CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc----Cc--
Confidence            699999999999999999865      79999999987542     35578999887666667888877653    22  


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhh-----CC--CeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA-----SP--SVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~-----~p--~illLDEPtsGLD~~~~~~i  148 (607)
                        .+++...++++...++|.+.    . .+.+..|||||-|||-+|...+.     ||  ++|+||||.++||......+
T Consensus        99 --~~~~a~~i~~i~~~L~l~DK----L-~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL  171 (248)
T COG4138          99 --DKTRTELLNDVAGALALDDK----L-GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL  171 (248)
T ss_pred             --hHHHHHHHHHHHhhhcccch----h-hhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH
Confidence              35566778899999999532    2 34678999999999999987764     33  69999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCc
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE  197 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~  197 (607)
                      -++|.+++.+|.+||++.||.+ ...+.+|++++|++|++...|..+++
T Consensus       172 drll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~~eV  219 (248)
T COG4138         172 DRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRREEV  219 (248)
T ss_pred             HHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecchhhh
Confidence            9999999999999999999976 45667899999999999999998874

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.92  E-value=1.4e-25  Score=206.38  Aligned_cols=116  Identities=46%  Similarity=0.731  Sum_probs=102.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+||||||||+++|+|..++.     +|+|.++|.++...     +..++|++|++.+++.+||+|+            
T Consensus        17 ~G~nGsGKStLl~~l~g~~~~~-----~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~------------   79 (137)
T PF00005_consen   17 VGPNGSGKSTLLKALAGLLPPD-----SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN------------   79 (137)
T ss_dssp             EESTTSSHHHHHHHHTTSSHES-----EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH------------
T ss_pred             EccCCCccccceeeeccccccc-----ccccccccccccccccccccccccccccccccccccccccc------------
Confidence            5999999999999999999876     89999999998762     3459999999999999999999            


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT  138 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPts  138 (607)
                          ..+++++++++.+++.+..++.++. ..+.|||||||||+||++|+.+|++++|||||+
T Consensus        80 ----~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   80 ----ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             ----HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ----ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence                2345688999999998877776654 458999999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PLN03073 ABC transporter F family; Provisional

Probab=99.92  E-value=3.7e-25  Score=254.33  Aligned_cols=106  Identities=27%  Similarity=0.334  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCe
Q 007344           82 DEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHT  161 (607)
Q Consensus        82 ~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~t  161 (607)
                      ++++.++++.+|+.+    ...++.++.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++   +.|
T Consensus       321 ~~r~~~~L~~lgl~~----~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~t  393 (718)
T PLN03073        321 EARAASILAGLSFTP----EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKT  393 (718)
T ss_pred             HHHHHHHHHHCCCCh----HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCE
Confidence            445667777788741    1123456789999999999999999999999999999999999999999999886   689


Q ss_pred             EEEEecCChhHHHhhhcceeeecCCeee-eeCCCC
Q 007344          162 VICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPAR  195 (607)
Q Consensus       162 vi~~~H~p~~~i~~~~D~v~lL~~G~iv-~~G~~~  195 (607)
                      ||+++|+. ..+...||++++|++|+++ |.|+.+
T Consensus       394 viivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~  427 (718)
T PLN03073        394 FIVVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYD  427 (718)
T ss_pred             EEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHH
Confidence            99999995 5788889999999999996 566543

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.91  E-value=2.4e-25  Score=226.67  Aligned_cols=176  Identities=15%  Similarity=0.175  Sum_probs=130.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCe-eC-C------CccceEEEEccCC---------CCCCCCCHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK-PS-S------NKAYKFAYVRQED---------LFFSQLTVRET   63 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~-~~-~------~~~~~i~yv~Q~~---------~l~~~lTV~E~   63 (607)
                      +||||||||||+++|++.+.+..    .|++...|. ++ .      ....++++++|++         .+.+.+||.++
T Consensus        31 vG~NGsGKStll~Ai~~ll~~~~----~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~  106 (251)
T cd03273          31 TGLNGSGKSNILDAICFVLGITN----LSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQ  106 (251)
T ss_pred             ECCCCCCHHHHHHHHHHHhcccc----cccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEEE
Confidence            69999999999999999986541    356666554 21 1      1123689999985         34567899988


Q ss_pred             HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCCcCCCCCHHHHHHHHHHHHHh---
Q 007344           64 LSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADS---------------NVGDAKVRGISGGEKKRLSLACELI---  125 (607)
Q Consensus        64 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~---------------~vg~~~~~~LSGGerqRvsIa~aL~---  125 (607)
                      +......+.... .+....+.+.++++.+|+..-...               ...+.+++.||||||||++||++|+   
T Consensus       107 I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~  185 (251)
T cd03273         107 IVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLL  185 (251)
T ss_pred             EEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhh
Confidence            865432211000 122334678899999998511000               1234567899999999999999998   


Q ss_pred             -hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeec
Q 007344          126 -ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       126 -~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                       .+|+++++||||+|||+.....+.+.|++++ +|.|+|+++|++  ++.+.+|+++-+.
T Consensus       186 ~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~  242 (251)
T cd03273         186 FKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR  242 (251)
T ss_pred             ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence             5789999999999999999999999999985 488999999994  6777899998875

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=9.6e-25  Score=201.91  Aligned_cols=171  Identities=25%  Similarity=0.311  Sum_probs=140.0

Q ss_pred             CCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCee--CC-----C------ccceEEEEccCCCCCCCCCHHHHHHHHH
Q 007344            2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP--SS-----N------KAYKFAYVRQEDLFFSQLTVRETLSLAA   68 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~--~~-----~------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~   68 (607)
                      ||||||||||||+|-|-+.++     +|+|.+.-..  ++     +      .++.+|||.|--...|..+..|-++-.+
T Consensus        44 G~SG~GKStllr~LYaNY~~d-----~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePl  118 (235)
T COG4778          44 GPSGSGKSTLLRSLYANYLPD-----EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPL  118 (235)
T ss_pred             CCCCCcHHHHHHHHHhccCCC-----CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHH
Confidence            899999999999999999988     8999875321  11     1      1234999999888888777666655444


Q ss_pred             HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .-   ...+.+..+.++..++.+|++.+....    -.+...||||+|||.|||.++.+-+||+|||||+.||..++..+
T Consensus       119 l~---~gv~~~~a~~~a~~Ll~rLnlperLW~----LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vV  191 (235)
T COG4778         119 LA---RGVPREVARAKAADLLTRLNLPERLWS----LAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV  191 (235)
T ss_pred             HH---cCCCHHHHHHHHHHHHHHcCCCHHHhc----CCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHH
Confidence            32   346677788889999999999654332    24678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTE  185 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  185 (607)
                      ++++++-+..|..+|=+-|| .+.-...+||++-+..
T Consensus       192 veli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~  227 (235)
T COG4778         192 VELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA  227 (235)
T ss_pred             HHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence            99999998899999999999 4455667999988753

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.91  E-value=1.1e-24  Score=220.45  Aligned_cols=173  Identities=17%  Similarity=0.211  Sum_probs=117.3

Q ss_pred             CCCCCCcHHHHHHHHHcC----------------cCCCCC-Cccce--EEEECCee----CCC----ccceEEEEccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQ----------------LMASPR-LHLSG--LLEVNGKP----SSN----KAYKFAYVRQEDL   53 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~----------------~~~~~~-~~~~G--~I~~~G~~----~~~----~~~~i~yv~Q~~~   53 (607)
                      +|||||||||||++|++.                +.++.+ ...++  +|.+++.+    ...    ..++++|++|+..
T Consensus        29 ~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~  108 (243)
T cd03272          29 VGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYF  108 (243)
T ss_pred             ECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEE
Confidence            699999999999999843                222210 01122  44555521    111    1245899999887


Q ss_pred             CCC-CCCHHHHHHHHHHccCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhh----C
Q 007344           54 FFS-QLTVRETLSLAAELQLPEILSV-EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA----S  127 (607)
Q Consensus        54 l~~-~lTV~E~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~----~  127 (607)
                      +++ ..|..|...+............ .....++.+   .+++.+..     +..++.||||||||++||++|+.    +
T Consensus       109 l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~---l~~l~~~~-----~~~~~~lS~G~~~r~~la~~l~~~~~~~  180 (243)
T cd03272         109 LDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINS---LTNMKQDE-----QQEMQQLSGGQKSLVALALIFAIQKCDP  180 (243)
T ss_pred             ECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH---hhhccccc-----cccccccCHHHHHHHHHHHHHHHhccCC
Confidence            777 4677776666555432211000 000112222   33443222     34577899999999999999974    5


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeec
Q 007344          128 PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       128 p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                      |+++++||||+|||+.++..+.+.|+++++ +.++|+++|++  ++...+|++++|.
T Consensus       181 ~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~  234 (243)
T cd03272         181 APFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK  234 (243)
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence            899999999999999999999999999866 77888888874  5778999999995

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.91  E-value=2.1e-23  Score=225.76  Aligned_cols=184  Identities=24%  Similarity=0.407  Sum_probs=154.2

Q ss_pred             CCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc------ceEEEEccC---CCCCCCCCHHHHHHHHHHccC
Q 007344            2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA------YKFAYVRQE---DLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~------~~i~yv~Q~---~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      |-=|||+|-|+++|.|..+..     +|+|.+||+++....      ..++|||.|   +-++..++|++|+.++...+.
T Consensus       292 GLvGaGRTEl~~~lfG~~~~~-----~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~  366 (500)
T COG1129         292 GLVGAGRTELARALFGARPAS-----SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRF  366 (500)
T ss_pred             ccccCCHHHHHHHHhCCCcCC-----CceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhh
Confidence            556999999999999976665     899999999876542      349999987   468899999999998833221


Q ss_pred             C-C-CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           73 P-E-ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        73 ~-~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      . . ..+....++.+++..+.|++.    +.-.+..+..||||.+|||.||+.|.++|++|||||||.|.|..+..+|.+
T Consensus       367 ~~~~~i~~~~e~~~~~~~~~~l~Ik----~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~  442 (500)
T COG1129         367 SRRGLIDRRKERALAERYIRRLRIK----TPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR  442 (500)
T ss_pred             ccccccChHHHHHHHHHHHHhcCcc----cCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHH
Confidence            1 1 345555667789999999984    222345678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCC
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPAR  195 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~  195 (607)
                      ++++++++|++||+++.+. +++..+||||++|++|+++..=+.+
T Consensus       443 li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~~  486 (500)
T COG1129         443 LIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDRE  486 (500)
T ss_pred             HHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEeccc
Confidence            9999999999999999995 6899999999999999998754443

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.90  E-value=4.4e-24  Score=210.65  Aligned_cols=152  Identities=25%  Similarity=0.274  Sum_probs=114.3

Q ss_pred             CCCCCCcHHHHHHHHH----cCcCCCCCCccceEEEECCeeCC--CccceEEEEccCC-----CCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLA----GQLMASPRLHLSGLLEVNGKPSS--NKAYKFAYVRQED-----LFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~La----G~~~~~~~~~~~G~I~~~G~~~~--~~~~~i~yv~Q~~-----~l~~~lTV~E~l~~~~~   69 (607)
                      +|||||||||||++|.    |..+++     .|.+..+...+.  .....+++++|++     .....+||.|++.+.  
T Consensus        28 ~G~NGsGKTTLl~ai~~~l~G~~~~~-----~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~--  100 (204)
T cd03240          28 VGQNGAGKTTIIEALKYALTGELPPN-----SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFC--  100 (204)
T ss_pred             ECCCCCCHHHHHHHHHHHHcCCCCcc-----cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeee--
Confidence            5999999999999995    887664     344431211121  2234699999987     444556888887542  


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHH------HHHHHHHhhCCCeEEEeCCCCCCCHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR------LSLACELIASPSVIYADEPTTGLDAF  143 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR------vsIa~aL~~~p~illLDEPtsGLD~~  143 (607)
                             ..++    +++.+              ++.++.||+|||||      ++||++++.+|+++++||||++||+.
T Consensus       101 -------~~~~----~~~~~--------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~  155 (204)
T cd03240         101 -------HQGE----SNWPL--------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEE  155 (204)
T ss_pred             -------chHH----HHHHH--------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHH
Confidence                   1122    22232              33567899999996      78999999999999999999999999


Q ss_pred             HHH-HHHHHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeec-CC
Q 007344          144 QAE-KVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLT-EG  186 (607)
Q Consensus       144 ~~~-~i~~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~-~G  186 (607)
                      .+. .+.+.|++++++ |.|||+++|++.  ....+|+++.|. +|
T Consensus       156 ~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~  199 (204)
T cd03240         156 NIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDG  199 (204)
T ss_pred             HHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCC
Confidence            999 999999999876 889999999964  346799999995 44

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.90  E-value=5.1e-23  Score=227.66  Aligned_cols=162  Identities=34%  Similarity=0.402  Sum_probs=133.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-LFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +||||+|||||||+|+|...+.     +|+|.+.-      .-++||..|+. .+.++.|+.|++.-...    . .   
T Consensus       354 iG~NG~GKSTLlk~l~g~~~~~-----~G~v~~g~------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~----~-~---  414 (530)
T COG0488         354 VGPNGAGKSTLLKLLAGELGPL-----SGTVKVGE------TVKIGYFDQHRDELDPDKTVLEELSEGFP----D-G---  414 (530)
T ss_pred             ECCCCCCHHHHHHHHhhhcccC-----CceEEeCC------ceEEEEEEehhhhcCccCcHHHHHHhhCc----c-c---
Confidence            6999999999999999988776     79887652      24699999986 44577899998765421    1 1   


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                       .+..+...|..+++..-    .-.++++.||||||.||.+|+.++.+|.+|+|||||+.||..+...+.+.|...   .
T Consensus       415 -~e~~~r~~L~~f~F~~~----~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~  486 (530)
T COG0488         415 -DEQEVRAYLGRFGFTGE----DQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---E  486 (530)
T ss_pred             -cHHHHHHHHHHcCCChH----HHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---C
Confidence             15668899999999532    124567899999999999999999999999999999999999999999988775   4


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCCeeeee
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYA  191 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~  191 (607)
                      .|||++||| +..+...+++++.+.+ ++..+
T Consensus       487 Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~  516 (530)
T COG0488         487 GTVLLVSHD-RYFLDRVATRIWLVED-KVEEF  516 (530)
T ss_pred             CeEEEEeCC-HHHHHhhcceEEEEcC-ceeEc
Confidence            699999999 6789999999999987 54433

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.89  E-value=3.8e-25  Score=219.49  Aligned_cols=162  Identities=17%  Similarity=0.148  Sum_probs=119.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-cceEEEEccCCCCCCCCCHHHHHHHHHHccCC-----C
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-----E   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-----~   74 (607)
                      +||||||||||+++|.-.               +|.+.... ..++++++|+..+++.+|+.|.+.+.......     .
T Consensus        31 vGpNGaGKSTll~~i~~~---------------~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   95 (212)
T cd03274          31 VGPNGSGKSNVIDSMLFV---------------FGFRASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSK   95 (212)
T ss_pred             ECCCCCCHHHHHHHHHHH---------------hccCHHHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHC
Confidence            699999999999999722               12221111 24589999999888999999887766543210     0


Q ss_pred             CCCHHHHHH--HHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHH
Q 007344           75 ILSVEERDE--YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA----SPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        75 ~~~~~~~~~--~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~----~p~illLDEPtsGLD~~~~~~i  148 (607)
                      ....++...  ..+++++.++|.+..++     .++.+|+|||||++||++++.    +|+++++||||+|||+.+...+
T Consensus        96 g~~~~~~~~~v~~~~~~~~~~L~~~~~~-----~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l  170 (212)
T cd03274          96 GIDLDHNRFLILQGEVEQIAQMPKKSWK-----NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIV  170 (212)
T ss_pred             CcCCCCCceEEcCCcEEEeecccccccc-----chhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHH
Confidence            011111110  12556677777655544     456899999999999999974    4799999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTE  185 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  185 (607)
                      .+.++++++ +.|+|+++|++  ++...||++++|..
T Consensus       171 ~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~  204 (212)
T cd03274         171 ANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK  204 (212)
T ss_pred             HHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence            999999864 57888888985  67889999999963

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.89  E-value=2e-23  Score=207.36  Aligned_cols=163  Identities=20%  Similarity=0.149  Sum_probs=111.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECC----eeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG----KPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G----~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +|||||||||||++|++.+-..    ..+....+.    .........+++++|++....  ++.+..          ..
T Consensus        34 ~G~NGsGKSTll~~i~~~l~g~----~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~----------gl   97 (213)
T cd03279          34 CGPTGAGKSTILDAITYALYGK----TPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR----------GL   97 (213)
T ss_pred             ECCCCCCHHHHHHHheeeEecC----ccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec----------CC
Confidence            5999999999999999654211    122222211    011122346899998863211  221111          22


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA----------SPSVIYADEPTTGLDAFQAE  146 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~----------~p~illLDEPtsGLD~~~~~  146 (607)
                      +.++..+.+  .++..++.+     ..+..++.||||||||++||++|+.          +|+++++||||+|||+.+..
T Consensus        98 ~~~~~~~~~--~l~~g~l~~-----~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~  170 (213)
T cd03279          98 DYDQFTRIV--LLPQGEFDR-----FLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALE  170 (213)
T ss_pred             CHHHHHHhh--hhhhcchHH-----HhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHH
Confidence            333222211  133333422     2244677899999999999999985          57899999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344          147 KVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       147 ~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  187 (607)
                      .+.+.|++++++|+|+|+++|++. .+...+|+++++++|.
T Consensus       171 ~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~  210 (213)
T cd03279         171 AVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG  210 (213)
T ss_pred             HHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence            999999999877999999999974 6778899999998874

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.89  E-value=1.1e-24  Score=212.99  Aligned_cols=209  Identities=25%  Similarity=0.425  Sum_probs=191.0

Q ss_pred             HHHHHHHHHHHHHHhcChhHH-HHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007344          285 RQFWLLLRRAWMQASRDGPTN-KVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKER  363 (607)
Q Consensus       285 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~i~~ali~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er  363 (607)
                      +|++.|++|+++..+||+... ...++..++.++++|.+|.+++++.++. ++.|++++.++..++.........+.+||
T Consensus         1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (210)
T PF01061_consen    1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER   79 (210)
T ss_pred             CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence            599999999999999999888 8999999999999999999988555555 77888877777777666666656788999


Q ss_pred             HHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 007344          364 AIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPT  443 (607)
Q Consensus       364 ~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i~a~~~s  443 (607)
                      ..+.||+.++.|++.+|++||.+.+++..++.++++.++.|++.|++.+  +|+.+++++++..+++.++|.++++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~  157 (210)
T PF01061_consen   80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS  157 (210)
T ss_pred             cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence            9999999999999999999999999999999999999999999999887  67778888888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhcccHHHHHHHHHHHHhh
Q 007344          444 TEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEF  496 (607)
Q Consensus       444 ~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef  496 (607)
                      .+.+..+.+++..+++++||.++|.+++|.|++|+.|+||++|++|++..++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f  210 (210)
T PF01061_consen  158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF  210 (210)
T ss_pred             hhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999998876

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.89  E-value=4.7e-23  Score=244.21  Aligned_cols=176  Identities=24%  Similarity=0.337  Sum_probs=144.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|+.|||||||+++|-++..+.     +|+|.+||.++.+.     +.+++.+|||+.+|.. |||.||.-..+      
T Consensus      1172 VGRTGaGKSSL~~aLFRl~e~~-----~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e------ 1239 (1381)
T KOG0054|consen 1172 VGRTGAGKSSLILALFRLVEPA-----EGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDE------ 1239 (1381)
T ss_pred             eCCCCCCHHHHHHHHHHhcCcc-----CCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCcccc------
Confidence            6999999999999999999876     89999999998764     4679999999999998 99999874322      


Q ss_pred             CCHHHHHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .++++    +-+.|+..+|.       ...|+.+.+ ...++|-||||.+++||||+++++||+|||.|++.|+.+-..|
T Consensus      1240 ~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lI 1314 (1381)
T KOG0054|consen 1240 YSDDE----IWEALERCQLKDVVSSLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 1314 (1381)
T ss_pred             cCHHH----HHHHHHHhChHHHHhhCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHH
Confidence            23333    33344444332       223444432 4678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      -+.+|+- =+++||+.+.|..+ .+.. +|||++|++|+++++|+|.+
T Consensus      1315 Q~tIR~~-F~dcTVltIAHRl~-TVmd-~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1315 QKTIREE-FKDCTVLTIAHRLN-TVMD-SDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred             HHHHHHH-hcCCeEEEEeeccc-hhhh-cCeEEEeeCCeEeecCChHH
Confidence            9999884 34689999999965 5655 69999999999999999876

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.86  E-value=4.4e-21  Score=233.00  Aligned_cols=136  Identities=28%  Similarity=0.360  Sum_probs=110.5

Q ss_pred             CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHh---hCCCe
Q 007344           54 FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI---ASPSV  130 (607)
Q Consensus        54 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~---~~p~i  130 (607)
                      .+...||.|+|.+...-........++..+++ ++++.+||.+.    ..++.+..||||||||++||++|+   .+|++
T Consensus       759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l----~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~L  833 (1809)
T PRK00635        759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYL----PLGRPLSSLSGGEIQRLKLAYELLAPSKKPTL  833 (1809)
T ss_pred             ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcch----hhcCccccCCHHHHHHHHHHHHHhhcCCCCCE
Confidence            56678999999887652211112234455666 58899999543    123456789999999999999998   69999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeec------CCeeeeeCCCCC
Q 007344          131 IYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT------EGKLVYAGPARD  196 (607)
Q Consensus       131 llLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~------~G~iv~~G~~~~  196 (607)
                      ++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..+|++++|.      +|++++.|++++
T Consensus       834 LILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpee  903 (1809)
T PRK00635        834 YVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEE  903 (1809)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence            9999999999999999999999999988999999999975 45 7899999996      789999998765

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.85  E-value=4.3e-22  Score=202.27  Aligned_cols=171  Identities=20%  Similarity=0.209  Sum_probs=112.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECC--------eeCC--Cccc--eEEEEccCCCC-CCCCCHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG--------KPSS--NKAY--KFAYVRQEDLF-FSQLTVRETLSLA   67 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G--------~~~~--~~~~--~i~yv~Q~~~l-~~~lTV~E~l~~~   67 (607)
                      +|||||||||||++|++.+.+.     .|++..++        ....  ....  .+.|..|++.. .-..++++..   
T Consensus        28 ~G~NGsGKStll~ai~~~l~~~-----~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~---   99 (247)
T cd03275          28 IGPNGSGKSNLMDAISFVLGEK-----SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS---   99 (247)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCC-----cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc---
Confidence            5999999999999999987543     23333222        1110  0111  24555554321 0011111110   


Q ss_pred             HHccCCCCCCHHHHHHHHHHHHHHcCCCcccc---------cccc--------CCcCCCCCHHHHHHHHHHHHHhhC---
Q 007344           68 AELQLPEILSVEERDEYVNSLLFKLGLVSCAD---------SNVG--------DAKVRGISGGEKKRLSLACELIAS---  127 (607)
Q Consensus        68 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d---------~~vg--------~~~~~~LSGGerqRvsIa~aL~~~---  127 (607)
                      ...+.. .  +....+.++++++.+|+.....         +.+.        +..+..||||||||++||++++.+   
T Consensus       100 ~~~~in-g--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~  176 (247)
T cd03275         100 SSYRIN-G--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQ  176 (247)
T ss_pred             eEEEEC-C--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccC
Confidence            000111 0  0111234578888899853211         1111        123488999999999999999875   


Q ss_pred             -CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeec
Q 007344          128 -PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       128 -p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                       |+++++||||+|||+..+..+.+.|++++++|.++|+++|++  ++...+|+++++.
T Consensus       177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~  232 (247)
T cd03275         177 PAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVY  232 (247)
T ss_pred             CCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEE
Confidence             899999999999999999999999999987799999999994  4567899999995

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.85  E-value=3.1e-21  Score=189.48  Aligned_cols=158  Identities=17%  Similarity=0.174  Sum_probs=107.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCe-eCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK-PSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~-~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +|||||||||||.+|.............|.. +... ........+..++|+..++++             .    .. .
T Consensus        27 ~G~NGsGKStll~ai~~~l~~~~~~~~r~~~-~~~~i~~~~~~~~i~~~~~~~~~~~~-------------~----~~-~   87 (198)
T cd03276          27 VGNNGSGKSAILTALTIGLGGKASDTNRGSS-LKDLIKDGESSAKITVTLKNQGLDAN-------------P----LC-V   87 (198)
T ss_pred             ECCCCCcHHHHHHHHHHHhcCCccccccccc-HHHHhhCCCCeEEEEEEEEcCCccCC-------------c----CC-H
Confidence            5999999999999997533221000001110 0000 001112347788887655541             0    11 1


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACEL----IASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL----~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      ..+..++++++.   .+..     +++++.||+|||||++||+++    +.+|++++|||||+|||..+...+.+.|+++
T Consensus        88 ~~~~~~~~~l~~---~~~~-----~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~  159 (198)
T cd03276          88 LSQDMARSFLTS---NKAA-----VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKE  159 (198)
T ss_pred             HHHHHHHHHhcc---cccc-----CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHH
Confidence            123456677765   3333     346778999999999999999    5899999999999999999999999999998


Q ss_pred             Hhc---CCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344          156 AQD---GHTVICSIHQPRGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       156 a~~---g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  187 (607)
                      +++   +.||++++|++. .+.. +|+|.+|..|+
T Consensus       160 ~~~~~~~~~iii~th~~~-~i~~-~d~v~~~~~~~  192 (198)
T cd03276         160 AKKQPGRQFIFITPQDIS-GLAS-SDDVKVFRMKD  192 (198)
T ss_pred             HhcCCCcEEEEEECCccc-cccc-ccceeEEEecC
Confidence            653   358999999975 5555 49999998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.84  E-value=7.1e-21  Score=209.86  Aligned_cols=162  Identities=30%  Similarity=0.390  Sum_probs=128.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      .||||||||||+|+|+|+-|-.     +|+|..-      ....+-|+||.+.+... |.||.+.+....   ...+   
T Consensus       425 ~G~SG~GKTsLlRaiaGLWP~g-----~G~I~~P------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~---~~~~---  486 (604)
T COG4178         425 TGESGAGKTSLLRALAGLWPWG-----SGRISMP------ADSALLFLPQRPYLPQG-TLREALCYPNAA---PDFS---  486 (604)
T ss_pred             ECCCCCCHHHHHHHHhccCccC-----CCceecC------CCCceEEecCCCCCCCc-cHHHHHhCCCCC---CCCC---
Confidence            4999999999999999999876     6776543      23458999999998877 999998875322   1122   


Q ss_pred             HHHHHHHHHHHcCCCcccccccc-CCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVG-DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg-~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                       ++.+.++|.++||.+..+..-+ ++--+.||+|||||+++||.|+++|++++|||.|++||+.+...+.+.+++-. .+
T Consensus       487 -d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~  564 (604)
T COG4178         487 -DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PD  564 (604)
T ss_pred             -hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CC
Confidence             3457789999999877654322 23457899999999999999999999999999999999999999999998843 36


Q ss_pred             CeEEEEecCChhHHHhhhcceeeec
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                      .|||-+.|.+.  +....++.+-+.
T Consensus       565 ~tvISV~Hr~t--l~~~h~~~l~l~  587 (604)
T COG4178         565 ATVISVGHRPT--LWNFHSRQLELL  587 (604)
T ss_pred             CEEEEeccchh--hHHHHhhheeec
Confidence            89999999875  445556655553

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.84  E-value=3.2e-20  Score=217.10  Aligned_cols=124  Identities=30%  Similarity=0.385  Sum_probs=104.9

Q ss_pred             CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC---CeEEEe
Q 007344           58 LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP---SVIYAD  134 (607)
Q Consensus        58 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p---~illLD  134 (607)
                      +||.|++.|...+.        .. ....+.++.+||.+.    ..++.+..||||||||+.||++|+.+|   ++++||
T Consensus       792 ltv~E~l~~f~~~~--------~i-~~~l~~L~~vgL~~l----~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILD  858 (943)
T PRK00349        792 MTVEEALEFFEAIP--------KI-ARKLQTLVDVGLGYI----KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILD  858 (943)
T ss_pred             CcHHHHHHHHHhch--------hh-hHHHHHHHHCCCCcc----cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence            79999999976542        11 234678999999532    123456789999999999999999999   999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344          135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD  196 (607)
Q Consensus       135 EPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~  196 (607)
                      |||+|||+.+...+++.|+++.++|.|||+++|++. .+ ..+|+++.|      ++|++++.|++++
T Consensus       859 EPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~e  924 (943)
T PRK00349        859 EPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEE  924 (943)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHH
Confidence            999999999999999999999988999999999974 44 579999999      7999999998765

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.83  E-value=7.1e-20  Score=194.87  Aligned_cols=185  Identities=26%  Similarity=0.404  Sum_probs=157.9

Q ss_pred             CCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeC-CCc------cceEEEEccCC---CCCCCCCHHHHHHHHHHcc
Q 007344            2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS-SNK------AYKFAYVRQED---LFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~-~~~------~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~   71 (607)
                      |-+|-|-+.|+.+|+|+.++.     +|+|.++|++. ...      ...++|||.|.   -+.+.+|+.||+.+...-+
T Consensus       291 GV~GNGQ~eL~eaisGlr~~~-----~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~  365 (501)
T COG3845         291 GVAGNGQSELVEAISGLRKPA-----SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDK  365 (501)
T ss_pred             ecCCCCHHHHHHHHhCCCccC-----CceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccc
Confidence            778999999999999998765     69999999986 221      12489999986   4678899999998876532


Q ss_pred             C----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344           72 L----PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        72 ~----~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~  147 (607)
                      .    .......+.++.+.++++++++....    -..+.+.||||.+||+-+||+|.++|++|+..+||.|||..+++.
T Consensus       366 ~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~----~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~  441 (501)
T COG3845         366 KPFSRGGFLDRRAIRKFARELIEEFDVRAPS----PDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEF  441 (501)
T ss_pred             cccccccccCHHHHHHHHHHHHHHcCccCCC----CCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHH
Confidence            1    12356678888999999999985221    133578999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       148 i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |.+.|.+++++|+.|++++.+. ++++.++|||.+|.+|+++...++++
T Consensus       442 I~~~l~e~r~~G~AVLLiS~dL-DEil~lsDrIaVi~~Gri~~~~~~~~  489 (501)
T COG3845         442 IHERLLELRDAGKAVLLISEDL-DEILELSDRIAVIYEGRIVGIVPPEE  489 (501)
T ss_pred             HHHHHHHHHhcCCEEEEEehhH-HHHHHhhheeeeeeCCceeccccccc
Confidence            9999999999999999999994 69999999999999999998887765

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.82  E-value=4.6e-20  Score=193.39  Aligned_cols=157  Identities=25%  Similarity=0.340  Sum_probs=125.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||-||||+.++|||.++|+     +|.         ...-+++|=||--.--...||++-|.-....+...      
T Consensus       373 lGpNgiGKTTFvk~LAG~ikPd-----eg~---------~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~------  432 (591)
T COG1245         373 LGPNGIGKTTFVKLLAGVIKPD-----EGS---------EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGS------  432 (591)
T ss_pred             ECCCCcchHHHHHHHhccccCC-----CCC---------CccceEeecceeecCCCCCcHHHHHHHhhhhhccc------
Confidence            6999999999999999999998     565         12346889999754445679999877655432111      


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g  159 (607)
                       .-...++++-|+|++..+.     .+.+|||||.|||+||.+|.+++++++||||++.||...+..+.+.+++.. ..+
T Consensus       433 -s~~~~ei~~pl~l~~i~e~-----~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~  506 (591)
T COG1245         433 -SYFKTEIVKPLNLEDLLER-----PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNE  506 (591)
T ss_pred             -chhHHhhcCccchHHHHhc-----ccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcC
Confidence             1134567788888655544     567899999999999999999999999999999999999999999999998 457


Q ss_pred             CeEEEEecCChhHHHhhhcceeeec
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                      +|.+++-||. ..+-.+.||+++..
T Consensus       507 kta~vVdHDi-~~~dyvsDr~ivF~  530 (591)
T COG1245         507 KTALVVDHDI-YMIDYVSDRLIVFE  530 (591)
T ss_pred             ceEEEEecce-ehhhhhhceEEEEe
Confidence            8999999995 46666788887763

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.82  E-value=1.2e-19  Score=212.03  Aligned_cols=125  Identities=29%  Similarity=0.370  Sum_probs=103.6

Q ss_pred             CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhh---CCCeEEE
Q 007344           57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA---SPSVIYA  133 (607)
Q Consensus        57 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~---~p~illL  133 (607)
                      .+||.|.+.|...+..        . .+..++++.+||...    ..++.++.|||||+||+.||++|+.   +|++++|
T Consensus       789 ~~tv~e~~~f~~~~~~--------i-~~~l~~L~~~gL~~l----~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llIL  855 (924)
T TIGR00630       789 DMTVEEAYEFFEAVPS--------I-SRKLQTLCDVGLGYI----KLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYIL  855 (924)
T ss_pred             CCcHHHHHHHHHhccc--------h-hHHHHHHHHcCCCch----hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEE
Confidence            4788888888765421        1 134578889999532    1234677899999999999999997   5999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344          134 DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD  196 (607)
Q Consensus       134 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~  196 (607)
                      ||||+|||+.....+++.|+++.++|.|||+++|++. .+ ..+|+++.|      ++|++++.|++++
T Consensus       856 DEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~  922 (924)
T TIGR00630       856 DEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEE  922 (924)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHH
Confidence            9999999999999999999999988999999999975 44 569999999      7999999998765

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.81  E-value=1.2e-20  Score=194.62  Aligned_cols=171  Identities=27%  Similarity=0.366  Sum_probs=133.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc----c-eEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA----Y-KFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~----~-~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +|.||||||||++.|.|+.+|+     +|+|.+||+|++...    | -++-|+-|-.+|+.+--            +..
T Consensus       355 iG~NGsGKST~~~LLtGL~~Pq-----sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~------------~e~  417 (546)
T COG4615         355 IGGNGSGKSTLAMLLTGLYQPQ-----SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG------------PEG  417 (546)
T ss_pred             ECCCCCcHHHHHHHHhcccCCC-----CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC------------Ccc
Confidence            6999999999999999999998     899999999987653    1 14556666666654211            111


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH-
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ-  154 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~-  154 (607)
                      .   ...+.++..++++.|.+.-.-.-|+-..-.||-|||||+++-.||+-+-+|+++||=-+-.||.-++.+.+.+-- 
T Consensus       418 ~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~  494 (546)
T COG4615         418 K---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPL  494 (546)
T ss_pred             C---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHH
Confidence            1   112457778888887654322223334567999999999999999999999999999999999999999886655 


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP  193 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~  193 (607)
                      +.++|+||+.++||.  .-|..+||++.+.+|++++.-+
T Consensus       495 LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~tg  531 (546)
T COG4615         495 LKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELTG  531 (546)
T ss_pred             HHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeeccc
Confidence            568899999999985  4678899999999999987553

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.79  E-value=1.5e-19  Score=193.30  Aligned_cols=165  Identities=24%  Similarity=0.369  Sum_probs=126.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccC--CCCCCCCCHHHHHHHHHHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE--DLFFSQLTVRETLSLAAELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~--~~l~~~lTV~E~l~~~~~~~~~~~~~~   78 (607)
                      +||||+|||||||++.|.+.|.     .|.|.-.      ...++++..|+  +.+--+.++.|++.-..    +    .
T Consensus       422 VGPNG~GKsTLlKl~~gdl~p~-----~G~vs~~------~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~----~----~  482 (614)
T KOG0927|consen  422 VGPNGAGKSTLLKLITGDLQPT-----IGMVSRH------SHNKLPRYNQHLAEQLDLDKSSLEFMMPKF----P----D  482 (614)
T ss_pred             ecCCCCchhhhHHHHhhccccc-----ccccccc------ccccchhhhhhhHhhcCcchhHHHHHHHhc----c----c
Confidence            6999999999999999999987     6776432      12345555565  34444567777665332    1    1


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344           79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~  158 (607)
                      +...+.+..+|.++||...+    -+.+++.||+|||+||..|+.++..|.+|+|||||+|||..+...+-+.|.+.   
T Consensus       483 ~~~~e~~r~ilgrfgLtgd~----q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---  555 (614)
T KOG0927|consen  483 EKELEEMRSILGRFGLTGDA----QVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---  555 (614)
T ss_pred             cchHHHHHHHHHHhCCCccc----cccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---
Confidence            23345688899999996333    23467899999999999999999999999999999999999999888888765   


Q ss_pred             CCeEEEEecCChhHHHhhhcceeeecCCee-eeeC
Q 007344          159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKL-VYAG  192 (607)
Q Consensus       159 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i-v~~G  192 (607)
                      ..+||+++||- ..+-+.++++.+..+|.+ .+.|
T Consensus       556 ~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G  589 (614)
T KOG0927|consen  556 PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDG  589 (614)
T ss_pred             CCceeeeechh-hHHHHHHHHhHhhccCceeecCc
Confidence            45899999995 478889999999987755 4444

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.78  E-value=5.9e-19  Score=188.74  Aligned_cols=109  Identities=28%  Similarity=0.381  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344           79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~  158 (607)
                      +..+.++.++|..+|-.    ...-++.++++|||+|.|+++||+|..+|++|+|||||+|||..+...+-+.|.+.-+ 
T Consensus       195 ~~~~~k~~~il~glgf~----~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-  269 (614)
T KOG0927|consen  195 DTFEAKAAKILHGLGFL----SEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-  269 (614)
T ss_pred             hhHHHHHHHHHHhcCCC----HhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-
Confidence            44556677788888763    2233456789999999999999999999999999999999999999999888877532 


Q ss_pred             CCeEEEEecCChhHHHhhhcceeeecCCee-eeeCCC
Q 007344          159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKL-VYAGPA  194 (607)
Q Consensus       159 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i-v~~G~~  194 (607)
                       .++|+++|. .+.+-..|.+|+-|.+++. .|.|+-
T Consensus       270 -~~lVi~sh~-QDfln~vCT~Ii~l~~kkl~~y~Gny  304 (614)
T KOG0927|consen  270 -IILVIVSHS-QDFLNGVCTNIIHLDNKKLIYYEGNY  304 (614)
T ss_pred             -ceEEEEecc-hhhhhhHhhhhheecccceeeecCCH
Confidence             188888887 6788889999999999995 555654

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.78  E-value=8.3e-19  Score=174.19  Aligned_cols=82  Identities=18%  Similarity=0.201  Sum_probs=68.6

Q ss_pred             CcCCCCCHHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc-C-CeEEEEecCChhHHHhhhc
Q 007344          105 AKVRGISGGEKKRLSLACEL----IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-G-HTVICSIHQPRGSVYFKFD  178 (607)
Q Consensus       105 ~~~~~LSGGerqRvsIa~aL----~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~-g-~tvi~~~H~p~~~i~~~~D  178 (607)
                      ..+..||||||||+.++.+|    +.+|+++++||||+|||+.++..+++.|++++++ | .|+|+++|+.. .....+|
T Consensus       122 ~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~  200 (213)
T cd03277         122 LDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHE  200 (213)
T ss_pred             cchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccC
Confidence            35678999999998877554    5799999999999999999999999999999866 6 48999999864 3445555


Q ss_pred             --ceeeecCCe
Q 007344          179 --DIVLLTEGK  187 (607)
Q Consensus       179 --~v~lL~~G~  187 (607)
                        ++++|++|+
T Consensus       201 ~~~v~~l~~g~  211 (213)
T cd03277         201 KMTVLCVYNGP  211 (213)
T ss_pred             ceEEEEEecCc
Confidence              788888886

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=2.5e-18  Score=183.05  Aligned_cols=164  Identities=23%  Similarity=0.383  Sum_probs=129.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +|+||+||||++|++.|...|.     .|.+.+++      +.+++|-.|...=+-.+.|-+ +.+..+++..  ..   
T Consensus       396 vg~ng~gkst~lKi~~~~l~~~-----rgi~~~~~------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~pG--~~---  458 (582)
T KOG0062|consen  396 VGENGDGKSTLLKILKGDLTPT-----RGIVGRHP------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSFPG--KT---  458 (582)
T ss_pred             eccCchhHHHHHHHHhccCCcc-----cceeeecc------cceecchhHhhhhHHHHHhHH-HHHHHHhCCC--CC---
Confidence            5999999999999999988765     57665542      457999999765444445543 3444444321  23   


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH  160 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~  160 (607)
                       ++.+++-+..+||+    ..+....+.+||||||-||++|.....+|-+|+|||||+.||-.+-..+.+.|+..   +.
T Consensus       459 -~ee~r~hl~~~Gl~----g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~G  530 (582)
T KOG0062|consen  459 -EEEIRRHLGSFGLS----GELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NG  530 (582)
T ss_pred             -HHHHHHHHHhcCCC----chhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CC
Confidence             33466778999995    34444557899999999999999999999999999999999999998888888776   56


Q ss_pred             eEEEEecCChhHHHhhhcceeeecCCeeee
Q 007344          161 TVICSIHQPRGSVYFKFDDIVLLTEGKLVY  190 (607)
Q Consensus       161 tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~  190 (607)
                      .||+++|+ ...+...|+.+++.++|++.-
T Consensus       531 GVv~VSHd-~~fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  531 GVVLVSHD-EEFISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             cEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence            89999999 568899999999999999864

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.76  E-value=4.7e-18  Score=164.17  Aligned_cols=74  Identities=20%  Similarity=0.284  Sum_probs=67.9

Q ss_pred             CCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecC
Q 007344          110 ISGGEKKRLSLACELI----ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTE  185 (607)
Q Consensus       110 LSGGerqRvsIa~aL~----~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  185 (607)
                      ||||||||++||++++    .+|+++++|||++|||+..+..+.+.|++++++|.|+|+++|++.  ....+|+++.+..
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~  172 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF  172 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence            9999999999999996    699999999999999999999999999999877899999999964  4567999999964

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.75  E-value=1.9e-18  Score=181.34  Aligned_cols=164  Identities=29%  Similarity=0.405  Sum_probs=118.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEE-------EECCeeCCC-------ccceE----EEEccCCCCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLL-------EVNGKPSSN-------KAYKF----AYVRQEDLFFSQLTVRE   62 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I-------~~~G~~~~~-------~~~~i----~yv~Q~~~l~~~lTV~E   62 (607)
                      +||||-||||-+|+|+|.+.|.- +..++.-       .+.|..+.+       ...++    -||.--+..+.. ||.|
T Consensus       106 lG~NGiGKsTalkILaGel~PNL-G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG-~v~e  183 (591)
T COG1245         106 LGPNGIGKSTALKILAGELKPNL-GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKG-KVGE  183 (591)
T ss_pred             EcCCCccHHHHHHHHhCccccCC-CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhcc-hHHH
Confidence            69999999999999999998861 1111110       011111110       01122    233333333333 6666


Q ss_pred             HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 007344           63 TLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDA  142 (607)
Q Consensus        63 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~  142 (607)
                      -|.-..            -+...+++++.++|.+..|.     .++.|||||.||++||.+++++++++++|||||-||.
T Consensus       184 lLk~~d------------e~g~~devve~l~L~nvl~r-----~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi  246 (591)
T COG1245         184 LLKKVD------------ERGKFDEVVERLGLENVLDR-----DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDI  246 (591)
T ss_pred             HHHhhh------------hcCcHHHHHHHhcchhhhhh-----hhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccH
Confidence            554321            12357889999999666554     4668999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeec
Q 007344          143 FQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       143 ~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                      ..+....+.++++++.+++||++.||. .-+-.+.|-|.++.
T Consensus       247 ~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~Y  287 (591)
T COG1245         247 RQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILY  287 (591)
T ss_pred             HHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEe
Confidence            999999999999998899999999995 35666778887775

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.74  E-value=2.2e-18  Score=164.67  Aligned_cols=192  Identities=19%  Similarity=0.232  Sum_probs=141.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC---Cc-c-----ceEEEEccCCC--CCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS---NK-A-----YKFAYVRQEDL--FFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~---~~-~-----~~i~yv~Q~~~--l~~~lTV~E~l~~~~~   69 (607)
                      +|.||||||-..|+|+|..+..=. .......+++.++-   +. +     +.+++++|++.  +-|.-+|...|.-...
T Consensus        39 VGESGSGKSLiAK~Ic~v~kdnW~-vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP  117 (330)
T COG4170          39 VGESGSGKSLIAKAICGVNKDNWR-VTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIP  117 (330)
T ss_pred             eccCCCchhHHHHHHhcccccceE-EEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCc
Confidence            699999999999999998765311 01122334444321   11 1     23789999984  4444444443332211


Q ss_pred             cc--CCCCCC-HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 007344           70 LQ--LPEILS-VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE  146 (607)
Q Consensus        70 ~~--~~~~~~-~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~  146 (607)
                      .+  ..+++. -..+++++-++|.++|+.+..|-  -..++.+|.-||-|+|.||.|++..|++|+.||||+.+|+.++.
T Consensus       118 ~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDI--M~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~  195 (330)
T COG4170         118 AWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDI--MRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQA  195 (330)
T ss_pred             cccccchHhhhhchhHHHHHHHHHHhccccHHHH--HHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHH
Confidence            10  001111 12345678899999999876543  34578899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          147 KVMEALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       147 ~i~~~L~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +|.++|.++. .+|.||++++||. ..+-+-||++-+|.-|+-++.++.++
T Consensus       196 QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ~~ESa~~e~  245 (330)
T COG4170         196 QIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQTVESAPSEE  245 (330)
T ss_pred             HHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEecccccccchhH
Confidence            9999999997 5689999999995 57888999999999999999888766

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=2.5e-18  Score=183.08  Aligned_cols=164  Identities=28%  Similarity=0.359  Sum_probs=113.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCC-CCCCCCCHHHHHHHHH-HccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-LFFSQLTVRETLSLAA-ELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~-~~~~~~~~~~   78 (607)
                      +|+||+|||||||+|+.           |.|  .+.+.... .+--|++-.. .+..+ |.++.+...- .+.     ..
T Consensus       112 vGrNG~GKsTLLRaia~-----------~~v--~~f~veqE-~~g~~t~~~~~~l~~D-~~~~dfl~~e~~l~-----~~  171 (582)
T KOG0062|consen  112 VGRNGIGKSTLLRAIAN-----------GQV--SGFHVEQE-VRGDDTEALQSVLESD-TERLDFLAEEKELL-----AG  171 (582)
T ss_pred             eCCCCCcHHHHHHHHHh-----------cCc--CccCchhh-eeccchHHHhhhhhcc-HHHHHHHHhhhhhh-----cc
Confidence            59999999999999997           111  12222111 1122333222 22233 4444332211 110     01


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344           79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~  158 (607)
                      -+.++...++|..+|..+    ..-...++.+|||=|-|+++||||..+|+||+|||||+.||..+...+.+.|+.+   
T Consensus       172 ~~l~ei~~~~L~glGFt~----emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---  244 (582)
T KOG0062|consen  172 LTLEEIYDKILAGLGFTP----EMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---  244 (582)
T ss_pred             chHHHHHHHHHHhCCCCH----HHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---
Confidence            033444555899999853    2334567899999999999999999999999999999999999999999999876   


Q ss_pred             CCeEEEEecCChhHHHhhhcceeeecCCee-eeeC
Q 007344          159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKL-VYAG  192 (607)
Q Consensus       159 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i-v~~G  192 (607)
                      +.|+|+++|| +..+-..|..|+-+++-|+ .|.|
T Consensus       245 ~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkG  278 (582)
T KOG0062|consen  245 KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKG  278 (582)
T ss_pred             CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcC
Confidence            4799999999 7788889999998887666 3445

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.74  E-value=5.2e-18  Score=166.91  Aligned_cols=83  Identities=16%  Similarity=0.161  Sum_probs=74.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecC
Q 007344          107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM-EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTE  185 (607)
Q Consensus       107 ~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~-~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  185 (607)
                      ...+|+|||||+.|+++ +.+|+++++|||++|||+.....+. ..++++.+.|.++|++||++  ++...+|+++.+.+
T Consensus        89 ~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~  165 (200)
T cd03280          89 LSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVEN  165 (200)
T ss_pred             cchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEE
Confidence            34699999999999987 5899999999999999999999996 47888887799999999973  57789999999999


Q ss_pred             CeeeeeC
Q 007344          186 GKLVYAG  192 (607)
Q Consensus       186 G~iv~~G  192 (607)
                      |++.+.+
T Consensus       166 g~l~~~~  172 (200)
T cd03280         166 ASMEFDP  172 (200)
T ss_pred             EEEEEec
Confidence            9999874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=8.6e-18  Score=174.92  Aligned_cols=155  Identities=30%  Similarity=0.421  Sum_probs=118.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED--LFFSQLTVRETLSLAAELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~   78 (607)
                      +||||.||||||++|.|.+.|.     .|+..      ++.+-+||+..|+.  .+-..-|.-|.|.-...      .+.
T Consensus       619 VGPNGVGKSTlLkLL~Gkl~P~-----~GE~R------KnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lpy  681 (807)
T KOG0066|consen  619 VGPNGVGKSTLLKLLIGKLDPN-----DGELR------KNHRLRIGWFDQHANEALNGEETPVEYLQRKFN------LPY  681 (807)
T ss_pred             ECCCCccHHHHHHHHhcCCCCC-----cchhh------ccceeeeechhhhhHHhhccccCHHHHHHHhcC------CCh
Confidence            6999999999999999999887     67643      23445799988874  45555677776653322      222


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344           79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~  158 (607)
                      +    .+...|-.+||...++|.    .++.||||||-||++|.--+..|+||||||||++||..+...+.+.+++.   
T Consensus       682 q----~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---  750 (807)
T KOG0066|consen  682 Q----EARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---  750 (807)
T ss_pred             H----HHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---
Confidence            2    345678889999888875    57889999999999999999999999999999999999988888877765   


Q ss_pred             CCeEEEEecCChhHHHhhhcceeeec
Q 007344          159 GHTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       159 g~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                      ...||+++|+-+ .+.+.--.++++.
T Consensus       751 ~GgVi~VsHDeR-Li~eT~C~LwVvE  775 (807)
T KOG0066|consen  751 NGGVIMVSHDER-LIVETDCNLWVVE  775 (807)
T ss_pred             cCcEEEEecccc-eeeecCceEEEEc
Confidence            468999999965 2333333455554

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.73  E-value=1.2e-17  Score=179.89  Aligned_cols=169  Identities=23%  Similarity=0.262  Sum_probs=126.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||+|||+|+|+.+..     +|++..-...   ..+.+-||||.|.+--. |.||.+.|....-.+  .++..
T Consensus       467 tG~sG~GKtSLlRvlggLWp~~-----~G~l~k~~~~---~~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~  535 (659)
T KOG0060|consen  467 TGPSGCGKTSLLRVLGGLWPST-----GGKLTKPTDG---GPKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSA  535 (659)
T ss_pred             ECCCCCchhHHHHHHhcccccC-----CCeEEecccC---CCCceEEecCCCCcccc-chhheeeccCccccc--cccCC
Confidence            5999999999999999999865     7887654322   12448999999987666 999999886322111  11222


Q ss_pred             HHHHHHHHHHHcCCCcccccccc------CCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVG------DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg------~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      .++++.+.|+.++|.|..+..=|      -.....||+||+||++.||-+.++|++-+|||-||++|......+.+.+++
T Consensus       536 ~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~  615 (659)
T KOG0060|consen  536 SDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE  615 (659)
T ss_pred             CHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH
Confidence            34456677777777665433222      123467999999999999999999999999999999999999998888876


Q ss_pred             HHhcCCeEEEEecCChhHHHhhhcceeeecC
Q 007344          155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTE  185 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  185 (607)
                      +   |.|.|-+.|.++  +...=|.++-|+.
T Consensus       616 ~---giT~iSVgHRkS--L~kfHd~~L~~~g  641 (659)
T KOG0060|consen  616 M---GITFISVGHRKS--LWKFHDYVLRMDG  641 (659)
T ss_pred             c---CCeEEEeccHHH--HHhhhhEEEEecC
Confidence            5   899999999765  4444477777763

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.72  E-value=2.4e-17  Score=193.16  Aligned_cols=135  Identities=27%  Similarity=0.428  Sum_probs=108.0

Q ss_pred             CCCCCHHHHHHHHHHccCCCCCC------HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC
Q 007344           55 FSQLTVRETLSLAAELQLPEILS------VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP  128 (607)
Q Consensus        55 ~~~lTV~E~l~~~~~~~~~~~~~------~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p  128 (607)
                      +..+||.|.+.|...+..+....      ..+..++++ .++.+||.+.    ..++.+..|||||||||.||++|..+|
T Consensus       434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l----~l~r~~~~LSgGE~QRv~LA~aL~~~~  508 (943)
T PRK00349        434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYL----TLSRSAGTLSGGEAQRIRLATQIGSGL  508 (943)
T ss_pred             HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCC----CCCCchhhCCHHHHHHHHHHHHHhhCC
Confidence            45689999999965543221000      123344554 6888888543    124567789999999999999999997


Q ss_pred             --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344          129 --SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD  196 (607)
Q Consensus       129 --~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~  196 (607)
                        ++++|||||+|||+..+..+++.|++++++|.|||+++|++. .+. .+|+|++|      ++|++++.|++++
T Consensus       509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e  582 (943)
T PRK00349        509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TIR-AADYIVDIGPGAGVHGGEVVASGTPEE  582 (943)
T ss_pred             CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHH-hCCEEEEeccccCCCCCEEeeccCHHH
Confidence              999999999999999999999999999988999999999975 454 59999999      9999999998765

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.71  E-value=3e-17  Score=192.00  Aligned_cols=135  Identities=26%  Similarity=0.401  Sum_probs=105.9

Q ss_pred             CCCCCHHHHHHHHHHccCCCCCCH------HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC
Q 007344           55 FSQLTVRETLSLAAELQLPEILSV------EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP  128 (607)
Q Consensus        55 ~~~lTV~E~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p  128 (607)
                      +..|||.|.+.|...+........      .+..+++ +.+..+||...    ..++.+.+|||||+|||.||++|+.+|
T Consensus       432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l----~l~r~~~tLSGGE~QRv~LA~aL~~~~  506 (924)
T TIGR00630       432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYL----TLSRAAGTLSGGEAQRIRLATQIGSGL  506 (924)
T ss_pred             HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhcccccc----ccCCCcCcCCHHHHHHHHHHHHHhhCC
Confidence            346899999999876543210000      1122222 23667777432    124567899999999999999999986


Q ss_pred             --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344          129 --SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD  196 (607)
Q Consensus       129 --~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~  196 (607)
                        ++++|||||+|||+.....+++.|++++++|.|||+++|++. .+ ..+|++++|      ++|++++.|++++
T Consensus       507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~e  580 (924)
T TIGR00630       507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEE  580 (924)
T ss_pred             CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHH
Confidence              899999999999999999999999999988999999999964 45 489999999      8999999998765

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.70  E-value=3.5e-17  Score=155.67  Aligned_cols=75  Identities=28%  Similarity=0.352  Sum_probs=67.3

Q ss_pred             CCCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeec
Q 007344          109 GISGGEKKRLSLACELIA----SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       109 ~LSGGerqRvsIa~aL~~----~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                      +||+||+||+++|++|..    +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++.  +...+|+++.|.
T Consensus        77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~  154 (162)
T cd03227          77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK  154 (162)
T ss_pred             eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence            399999999999999987    78999999999999999999999999998766889999999964  456789999985


Q ss_pred             C
Q 007344          185 E  185 (607)
Q Consensus       185 ~  185 (607)
                      .
T Consensus       155 ~  155 (162)
T cd03227         155 K  155 (162)
T ss_pred             E
Confidence            3

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.67  E-value=1.6e-16  Score=151.61  Aligned_cols=173  Identities=23%  Similarity=0.354  Sum_probs=124.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-----ccceEEEEccC----------CCCCCCCCHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-----KAYKFAYVRQE----------DLFFSQLTVRETLS   65 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~----------~~l~~~lTV~E~l~   65 (607)
                      +|.||||||||||+|+|..-..     .|.|.++|.+.-.     ......|+--+          -.+-.+.++. .+.
T Consensus        46 VGaNGaGKtTlLKiLsGKhmv~-----~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae-~mi  119 (291)
T KOG2355|consen   46 VGANGAGKTTLLKILSGKHMVG-----GGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAE-HMI  119 (291)
T ss_pred             EecCCCchhhhHHHhcCccccc-----CCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHH-HHH
Confidence            5999999999999999976543     5889999976421     11123343221          1222345553 444


Q ss_pred             HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 007344           66 LAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQA  145 (607)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~  145 (607)
                      |+..     .... +   +-+++++.|.+. .      ..+.+.+|-||||||.|++.|++.-++|+|||-|--||..++
T Consensus       120 fgV~-----g~dp-~---Rre~LI~iLDId-l------~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlAR  183 (291)
T KOG2355|consen  120 FGVG-----GDDP-E---RREKLIDILDID-L------RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLAR  183 (291)
T ss_pred             hhcc-----CCCh-h---Hhhhhhhheecc-c------eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHH
Confidence            5432     1122 2   334566666552 1      234678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          146 EKVMEALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       146 ~~i~~~L~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ..+++.|++-+ ..|.||+..||-- +-+..-..+++.+++|+++-.-+..+
T Consensus       184 adLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gkl~~~l~~~~  234 (291)
T KOG2355|consen  184 ADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGKLVDNLKYQK  234 (291)
T ss_pred             HHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCeeeeccccch
Confidence            99999999988 4688999999974 45666778999999999986554443

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.67  E-value=1.9e-16  Score=163.52  Aligned_cols=77  Identities=32%  Similarity=0.439  Sum_probs=68.6

Q ss_pred             CCCCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee
Q 007344          108 RGISGGEKKRLSLACELIA----SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL  183 (607)
Q Consensus       108 ~~LSGGerqRvsIa~aL~~----~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL  183 (607)
                      ..||||||||+++|++++.    +|+++++||||+|||+.....+.+.|+++.+ +.|+|+++|+|.  +...+|+++.+
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l  245 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLV  245 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEE
Confidence            4599999999999987654    9999999999999999999999999999865 789999999975  45789999999


Q ss_pred             cCCe
Q 007344          184 TEGK  187 (607)
Q Consensus       184 ~~G~  187 (607)
                      .+|.
T Consensus       246 ~~~~  249 (276)
T cd03241         246 EKEV  249 (276)
T ss_pred             EEec
Confidence            7653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.65  E-value=1.7e-15  Score=168.78  Aligned_cols=126  Identities=32%  Similarity=0.426  Sum_probs=104.4

Q ss_pred             CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC---CeEEE
Q 007344           57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP---SVIYA  133 (607)
Q Consensus        57 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p---~illL  133 (607)
                      .|||.|...|....      +   .-.+.-+.|.++||.-.   .+| +..-.|||||.|||-+|.+|..+.   .+++|
T Consensus       783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL  849 (935)
T COG0178         783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL  849 (935)
T ss_pred             hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence            47888888887642      1   12234467778898422   223 466789999999999999999887   89999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCCc
Q 007344          134 DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARDE  197 (607)
Q Consensus       134 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~~  197 (607)
                      ||||+||-.....++++.|.+|.++|.|||++.|+.  ++...+|.|+=|      ..|++++.|+|+++
T Consensus       850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeev  917 (935)
T COG0178         850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEV  917 (935)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHH
Confidence            999999999999999999999999999999999985  577889999999      35899999999884

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.65  E-value=2.1e-16  Score=155.32  Aligned_cols=118  Identities=19%  Similarity=0.263  Sum_probs=89.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||||+|+|...          +...|.++...    .+++|.+.+++.+|+.|++.+....      ...+
T Consensus        31 tGpNg~GKSTllr~i~~~~~----------l~~~G~~v~a~----~~~~q~~~l~~~~~~~d~l~~~~s~------~~~e   90 (199)
T cd03283          31 TGSNMSGKSTFLRTIGVNVI----------LAQAGAPVCAS----SFELPPVKIFTSIRVSDDLRDGISY------FYAE   90 (199)
T ss_pred             ECCCCCChHHHHHHHHHHHH----------HHHcCCEEecC----ccCcccceEEEeccchhccccccCh------HHHH
Confidence            59999999999999998542          11233333221    3667778899999999999775321      1233


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhcC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME-ALRQLAQDG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~-~L~~la~~g  159 (607)
                      . +++.++++.+++                               .+|+++++|||++|+|+.....+.. .++++.+.|
T Consensus        91 ~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~  138 (199)
T cd03283          91 L-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKN  138 (199)
T ss_pred             H-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCC
Confidence            3 557778877652                               6999999999999999999988754 788888789


Q ss_pred             CeEEEEecCCh
Q 007344          160 HTVICSIHQPR  170 (607)
Q Consensus       160 ~tvi~~~H~p~  170 (607)
                      .|+|++||++.
T Consensus       139 ~tiiivTH~~~  149 (199)
T cd03283         139 TIGIISTHDLE  149 (199)
T ss_pred             CEEEEEcCcHH
Confidence            99999999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.61  E-value=2.8e-15  Score=183.04  Aligned_cols=135  Identities=25%  Similarity=0.432  Sum_probs=104.3

Q ss_pred             CCCCCHHHHHHHHHHccCCCCCC---HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC--C
Q 007344           55 FSQLTVRETLSLAAELQLPEILS---VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP--S  129 (607)
Q Consensus        55 ~~~lTV~E~l~~~~~~~~~~~~~---~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p--~  129 (607)
                      +..|++.|.+.|...+.......   ..+..+++ +.|..+||.+..    .++.+..|||||+|||.||++|..+|  +
T Consensus       424 ~~~m~i~~l~~~~~~l~~~~~~~~~il~ei~~RL-~~L~~vGL~~L~----ldR~~~tLSGGE~QRV~LAraL~~~p~g~  498 (1809)
T PRK00635        424 FQQMSLQELFIFLSQLPSKSLSIEEVLQGLKSRL-SILIDLGLPYLT----PERALATLSGGEQERTALAKHLGAELIGI  498 (1809)
T ss_pred             HhcCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHHhccccCCC----CCCchhhCCHHHHHHHHHHHHHhcCCCCc
Confidence            34688999888876653100000   01122222 234567885431    23456789999999999999999999  8


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeec------CCeeeeeCCCCC
Q 007344          130 VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT------EGKLVYAGPARD  196 (607)
Q Consensus       130 illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~------~G~iv~~G~~~~  196 (607)
                      +++|||||+|||+.++..+.+.|++++++|.|||+++|++.  +...+|++++|.      +|++++.|++++
T Consensus       499 lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~~e  569 (1809)
T PRK00635        499 TYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSPRE  569 (1809)
T ss_pred             EEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCHHH
Confidence            99999999999999999999999999988999999999974  568899999996      789999998765

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.60  E-value=1.1e-15  Score=162.98  Aligned_cols=151  Identities=23%  Similarity=0.341  Sum_probs=109.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHH---ccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAE---LQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~---~~~~~~~~   77 (607)
                      +||||||||+|.++|+|+.|-.     .|.      -..+...++-|+||.|.+- .-|.||.+.+.-.   ++ .+..+
T Consensus       514 tGPNGCGKSSLfRILggLWPvy-----~g~------L~~P~~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~-~kg~~  580 (728)
T KOG0064|consen  514 TGPNGCGKSSLFRILGGLWPVY-----NGL------LSIPRPNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMK-RKGYT  580 (728)
T ss_pred             ECCCCccHHHHHHHHhccCccc-----CCe------eecCCCcceEeccCCCccC-cCcccceeecCCcHHHHH-hcCCC
Confidence            5999999999999999998753     343      3334445699999998765 3477776655211   11 01222


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCC----cCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDA----KVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~----~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                          ++..+.+|+.+.|++......|=.    .-.-||||||||+.+||.+-++|+.-+|||-||+..+.....+.+..+
T Consensus       581 ----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak  656 (728)
T KOG0064|consen  581 ----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK  656 (728)
T ss_pred             ----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH
Confidence                233556666666665544333311    234699999999999999999999999999999999998888887776


Q ss_pred             HHHhcCCeEEEEecCChh
Q 007344          154 QLAQDGHTVICSIHQPRG  171 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~  171 (607)
                      .   .|.+.+-++|+|+.
T Consensus       657 ~---~gi~llsithrpsl  671 (728)
T KOG0064|consen  657 D---AGISLLSITHRPSL  671 (728)
T ss_pred             h---cCceEEEeecCccH
Confidence            5   48999999999974

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.59  E-value=1.2e-14  Score=149.56  Aligned_cols=78  Identities=18%  Similarity=0.217  Sum_probs=63.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhh
Q 007344          106 KVRGISGGEKKRLSLACELI---------ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK  176 (607)
Q Consensus       106 ~~~~LSGGerqRvsIa~aL~---------~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~  176 (607)
                      ..+-+|+||||+++||++|+         .+|+++++||||++||+..+..+.+.++++.    .+++++|+. ..+...
T Consensus       180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~-~~~~~~  254 (270)
T cd03242         180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDL-ADFDAL  254 (270)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCc-hhccch
Confidence            34568999999999999985         7999999999999999999999999998753    355555553 345555


Q ss_pred             h---cceeeecCCee
Q 007344          177 F---DDIVLLTEGKL  188 (607)
Q Consensus       177 ~---D~v~lL~~G~i  188 (607)
                      +   ++++.+++|++
T Consensus       255 ~~~~~~i~~l~~g~i  269 (270)
T cd03242         255 WLRRAQIFRVDAGTL  269 (270)
T ss_pred             hccCccEEEEeCcEE
Confidence            5   67899999985

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.58  E-value=7.9e-16  Score=153.81  Aligned_cols=97  Identities=18%  Similarity=0.159  Sum_probs=77.2

Q ss_pred             HHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHH--hhCCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHh-cC
Q 007344           86 NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACEL--IASPSVIYADEP---TTGLDAFQAEKVMEALRQLAQ-DG  159 (607)
Q Consensus        86 ~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL--~~~p~illLDEP---tsGLD~~~~~~i~~~L~~la~-~g  159 (607)
                      +++++.+|+.+.        ..+++|.|+++++.+++++  +++|++++||||   |++||+......  .++.+.+ .|
T Consensus        74 ~~il~~~~l~d~--------~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~  143 (222)
T cd03285          74 DCILARVGASDS--------QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIK  143 (222)
T ss_pred             ceeEeeeccccc--------hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCC
Confidence            345555666421        2468999999999999999  899999999999   999999888643  3345543 58


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCCeeeeeCCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA  194 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~  194 (607)
                      .++|++||+  .++..++|++..+++|++...+..
T Consensus       144 ~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~~  176 (222)
T cd03285         144 CFCLFATHF--HELTALADEVPNVKNLHVTALTDD  176 (222)
T ss_pred             CeEEEEech--HHHHHHhhcCCCeEEEEEEEEEeC
Confidence            899999996  478889999999999999877653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.56  E-value=3.8e-15  Score=146.75  Aligned_cols=85  Identities=12%  Similarity=0.049  Sum_probs=69.8

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344          109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME-ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       109 ~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~-~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  187 (607)
                      .+|++++ |++.+.+++.+|+++++||||+|+|+.....+.. +++.+.+.+.++|++||++  ++...+|++..+..|+
T Consensus        91 ~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~  167 (202)
T cd03243          91 TFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLH  167 (202)
T ss_pred             eHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEE
Confidence            4555555 5777788899999999999999999999888765 5677777789999999985  5667789999999999


Q ss_pred             eeeeCCCCC
Q 007344          188 LVYAGPARD  196 (607)
Q Consensus       188 iv~~G~~~~  196 (607)
                      +...+...+
T Consensus       168 ~~~~~~~~~  176 (202)
T cd03243         168 MEELITTGG  176 (202)
T ss_pred             EEEEecCCe
Confidence            998887544

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=99.54  E-value=1.4e-12  Score=131.31  Aligned_cols=226  Identities=11%  Similarity=0.125  Sum_probs=160.3

Q ss_pred             HHHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCC-CCC--hhh--HHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 007344          293 RAWMQASRDGPTNKVRARMSIASAIIFGSVFWRM-GRS--QTS--IQD--RMGLLQVAAINTAMAALTKTVGV-FPKERA  364 (607)
Q Consensus       293 R~~~~~~Rd~~~~~~r~~~~i~~ali~G~~f~~~-~~~--~~~--~~~--~~g~lf~~~~~~~~~~~~~~~~~-f~~er~  364 (607)
                      |+++...|||.....-+++-++..+++|.++-.. +..  ..+  ..+  -.|++.+..+..+...   .... ..+|+.
T Consensus         1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~---~~~~~~~~~~g   77 (236)
T TIGR01247         1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFS---GISVIWDRQFG   77 (236)
T ss_pred             CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHhC
Confidence            6778899999998888888888888888887442 111  111  111  1233332222222221   1222 223334


Q ss_pred             HHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Q 007344          365 IVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTT  444 (607)
Q Consensus       365 v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i~a~~~s~  444 (607)
                      ++.|=.. .-.++..|+++|.+.+++..++..+++..+.+++.+++.  ..++.+++.+++..++..++|.++++.+++.
T Consensus        78 ~~~~~~~-~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~  154 (236)
T TIGR01247        78 FLKEILV-APASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSM  154 (236)
T ss_pred             HHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            4444333 335788999999999999999998888888888777554  3445455556666778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhcccHHHHHHHHHHHHhhCCCccccCCCCCcccHHHHHhhcCCCCC
Q 007344          445 EAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGS  524 (607)
Q Consensus       445 ~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~~~~~~~~G~~~L~~~g~~~~  524 (607)
                      +.++.+.+++..+++.+||.+.|.+.+|.|++|+.+++|.+|+.|++-..-..+.                      +..
T Consensus       155 ~~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~----------------------~~~  212 (236)
T TIGR01247       155 EGFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVS----------------------PTF  212 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCC----------------------ccc
Confidence            9999999999999999999999999999999999999999999998654322211                      112


Q ss_pred             CchhHHHHHHHHHHHHHHHHHH
Q 007344          525 RISDTVMAQSRILLFWYCTTYL  546 (607)
Q Consensus       525 ~~~~~~~il~~~~~~~~~l~~~  546 (607)
                      +.+.++++++.+.+++.+++..
T Consensus       213 ~~~~~~~~l~~~~~~~~~l~~~  234 (236)
T TIGR01247       213 PLEQDLLVLTLLAVIFVGIAAV  234 (236)
T ss_pred             chHHHHHHHHHHHHHHHHHHHH
Confidence            4566788888888888877653

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.51  E-value=4e-14  Score=145.07  Aligned_cols=132  Identities=28%  Similarity=0.272  Sum_probs=89.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+++|+|.++++     +|+|.++|+++...      ...+++++|++. ...++|.++..-        
T Consensus       117 ~g~~g~GKttl~~~l~~~~~~~-----~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~k--------  182 (270)
T TIGR02858       117 ISPPQCGKTTLLRDLARILSTG-----ISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCPK--------  182 (270)
T ss_pred             EcCCCCCHHHHHHHHhCccCCC-----CceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccchH--------
Confidence            5999999999999999999887     89999999987421      123677788653 344455443110        


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                          .      +                          |     ........+|+++++|||++      ...+..+++.
T Consensus       183 ----~------~--------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~  215 (270)
T TIGR02858       183 ----A------E--------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEA  215 (270)
T ss_pred             ----H------H--------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHH
Confidence                0      0                          0     01222336999999999974      2334445555


Q ss_pred             HHhcCCeEEEEecCChhHHH------------hhhcceeeecCCeeeeeCCCCC
Q 007344          155 LAQDGHTVICSIHQPRGSVY------------FKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       155 la~~g~tvi~~~H~p~~~i~------------~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      + ++|.++|+++|++...-.            ..|||+++|++|+  ..|.+++
T Consensus       216 ~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~  266 (270)
T TIGR02858       216 L-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA  266 (270)
T ss_pred             H-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence            4 469999999998654222            5689999999887  5565544

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.50  E-value=4.9e-14  Score=147.30  Aligned_cols=157  Identities=27%  Similarity=0.380  Sum_probs=120.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +|.||.|||||+++++|+++|+.    .|+|-.         -.++|=||...-=..-|||+.+.--.  |     +.-.
T Consensus       373 lgEngtgkTTfi~mlag~~~pd~----~~e~p~---------lnVSykpqkispK~~~tvR~ll~~kI--r-----~ay~  432 (592)
T KOG0063|consen  373 LGENGTGKTTFIRMLAGRLKPDE----GGEIPV---------LNVSYKPQKISPKREGTVRQLLHTKI--R-----DAYM  432 (592)
T ss_pred             EccCCcchhHHHHHHhcCCCCCc----cCcccc---------cceeccccccCccccchHHHHHHHHh--H-----hhhc
Confidence            69999999999999999998872    344321         23778888765444568988764321  1     0111


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g  159 (607)
                      .-+.+.++++-|.+++..|.     .+.+|||||+|||++|..|=..+++++.|||.+-||+..+...-+.+++.- +.+
T Consensus       433 ~pqF~~dvmkpL~ie~i~dq-----evq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhak  507 (592)
T KOG0063|consen  433 HPQFVNDVMKPLQIENIIDQ-----EVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAK  507 (592)
T ss_pred             CHHHHHhhhhhhhHHHHHhH-----HhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhcc
Confidence            23467788888888766554     456899999999999999999999999999999999999999999999865 667


Q ss_pred             CeEEEEecCChhHHHhhhcceeee
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLL  183 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL  183 (607)
                      +|-.++.|+-- ..-.++||+++.
T Consensus       508 ktafvVEhdfI-maTYladrvivf  530 (592)
T KOG0063|consen  508 KTAFVVEHDFI-MATYLADRVIVF  530 (592)
T ss_pred             chhhhhhhHHH-HHHhhcceeEEE
Confidence            89999999854 333457888765

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.47  E-value=1.1e-13  Score=144.20  Aligned_cols=168  Identities=30%  Similarity=0.346  Sum_probs=118.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCC---CccceEEEECCeeCCCccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPR---LHLSGLLEVNGKPSSNKAYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~---~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +|+|||||||||++|+|.....+.   ..-+|.|.+--..      -.+.+|-+.. -|..-|+.|++.--     +.+ 
T Consensus       415 vGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~~~tilehl~s~-----tGD-  482 (593)
T COG2401         415 VGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFGEVTILEHLRSK-----TGD-  482 (593)
T ss_pred             EecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccCchhHHHHHhhc-----cCc-
Confidence            499999999999999997532100   0114555442211      1344554432 23345666664311     111 


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                           -....++|.+.||.+   ...-.+..+.||-|||.|+.||..+..+|.+++.||-.+.||+.++..+.+-+.+++
T Consensus       483 -----~~~AveILnraGlsD---AvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisela  554 (593)
T COG2401         483 -----LNAAVEILNRAGLSD---AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA  554 (593)
T ss_pred             -----hhHHHHHHHhhccch---hhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHH
Confidence                 123567899999863   333345678999999999999999999999999999999999999999999999998


Q ss_pred             -hcCCeEEEEecCChhHHHhh-hcceeeecCCeee
Q 007344          157 -QDGHTVICSIHQPRGSVYFK-FDDIVLLTEGKLV  189 (607)
Q Consensus       157 -~~g~tvi~~~H~p~~~i~~~-~D~v~lL~~G~iv  189 (607)
                       +.|.|++++||+|. .+-.+ -|+++++.-|++.
T Consensus       555 Re~giTlivvThrpE-v~~AL~PD~li~vgYg~v~  588 (593)
T COG2401         555 REAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP  588 (593)
T ss_pred             HHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence             45899999999974 34444 5888888766554

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=99.47  E-value=2.7e-11  Score=123.58  Aligned_cols=237  Identities=10%  Similarity=0.074  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHhcCCCCChh--hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 007344          287 FWLLLRRAWMQASRD-GPTNKVRARMSIASAIIFGSVFWRMGRSQT--SIQDRM--GLLQVAAINTAMAALTKTVGVFPK  361 (607)
Q Consensus       287 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~i~~ali~G~~f~~~~~~~~--~~~~~~--g~lf~~~~~~~~~~~~~~~~~f~~  361 (607)
                      ...+.+|+++..+|+ |......+++.++.-+++|..+-....+..  +..+..  |++-+++++.++....  ...+.+
T Consensus         7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~--~~~~~~   84 (253)
T TIGR01291         7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETI--YATFAR   84 (253)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            345669999999999 888888888888888888888643211111  111211  3332322222211111  112222


Q ss_pred             --HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007344          362 --ERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGA  439 (607)
Q Consensus       362 --er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i~a  439 (607)
                        |+..++|-+..- -++..++++|++.+.-..++..++...+.++ .|..+. ......+.++++..++..++|.++|+
T Consensus        85 ~r~~g~~~~l~~~P-v~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~  161 (253)
T TIGR01291        85 MRVTRTWEAMLYTP-ITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVAA  161 (253)
T ss_pred             HHHcccHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              333444444333 3788999999998877766666555444443 354443 23444445556677778899999999


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhcccHHHHHHHHHHHHhhCCCccccCCCCCcccHHHHHhhc
Q 007344          440 MVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERL  519 (607)
Q Consensus       440 ~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~~~~~~~~G~~~L~~~  519 (607)
                      ++++.+.+..+..++..+++.+||.+.|.+.+|.|++|+.+++|+.|+.|++-.. +.+.                    
T Consensus       162 ~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~-~~g~--------------------  220 (253)
T TIGR01291       162 LAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPV-MLGG--------------------  220 (253)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHH-HhCC--------------------
Confidence            9999999999999999999999999999999999999999999999999996433 3211                    


Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 007344          520 SFGGSRISDTVMAQSRILLFWYCTTYLLLEKK  551 (607)
Q Consensus       520 g~~~~~~~~~~~il~~~~~~~~~l~~~~l~~~  551 (607)
                        +..+.|.+++++.++.+++..++....|++
T Consensus       221 --~~~~~~~~~~~l~~~~vv~~~la~~~fr~~  250 (253)
T TIGR01291       221 --PGTQVGLHLGALCLYAVVPFFISAALLRRR  250 (253)
T ss_pred             --CcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              111245678888888888888888777654

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=99.46  E-value=1.5e-12  Score=128.62  Aligned_cols=151  Identities=17%  Similarity=0.131  Sum_probs=124.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007344          375 YALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSL  454 (607)
Q Consensus       375 Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~  454 (607)
                      -+...++++|++..++..+++.+++..+.|++.|++..  .++.+++++++..++..++|.++++++++...+.  ..++
T Consensus        57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~  132 (208)
T TIGR03062        57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVL  132 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHH
Confidence            45567899999999999999999998999999999864  4667777778888999999999999999765443  4445


Q ss_pred             HHHHHHHhccccCCCCccchhhhhhcccHHHHHHHHHHHHhhCCCccccCCCCCcccHHHHHhhcCCCCCCchhHHHHHH
Q 007344          455 MTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMAQS  534 (607)
Q Consensus       455 ~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~~~~il~  534 (607)
                      +.++++++|.+.|.+.+|.|++|+.+++|.+|+.+++-...+.+.                       ....|.++++++
T Consensus       133 ~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~-----------------------~~~~~~~~~~L~  189 (208)
T TIGR03062       133 LVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN-----------------------DGTLWQAVAVLL  189 (208)
T ss_pred             HHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc-----------------------HHHHHHHHHHHH
Confidence            567777899999999999999999999999999999976655331                       123578889999


Q ss_pred             HHHHHHHHHHHHHHHhcC
Q 007344          535 RILLFWYCTTYLLLEKKK  552 (607)
Q Consensus       535 ~~~~~~~~l~~~~l~~~~  552 (607)
                      ++.+++.++++...|+++
T Consensus       190 ~~~~v~~~la~~~~~~~~  207 (208)
T TIGR03062       190 LILVVFLALSLLSARRKR  207 (208)
T ss_pred             HHHHHHHHHHHHHHhhhc
Confidence            999999999998887665

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=6.3e-14  Score=146.40  Aligned_cols=177  Identities=27%  Similarity=0.334  Sum_probs=122.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC------------ccceEEEEccCCC-----CCCCCCHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------------KAYKFAYVRQEDL-----FFSQLTVRET   63 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~------------~~~~i~yv~Q~~~-----l~~~lTV~E~   63 (607)
                      +||||-||||||+.|+.+--.-+.   .=.|++..+.+-.            ..++...+..++.     --...|+.|-
T Consensus       296 VGPNG~GKTTLLkHIa~RalaIPp---nIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaEr  372 (807)
T KOG0066|consen  296 VGPNGMGKTTLLKHIAARALAIPP---NIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAER  372 (807)
T ss_pred             cCCCCCchHHHHHHHHhhhccCCC---CCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            699999999999999987421110   1123333332110            0112222221111     1234567666


Q ss_pred             HHH-HHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 007344           64 LSL-AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDA  142 (607)
Q Consensus        64 l~~-~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~  142 (607)
                      |.- +..+|...   ....+.++.++|.-||.+.    ..-++.....|||=|-||++||||...|.+|.|||||+.||-
T Consensus       373 l~~v~~ELraiG---A~sAEarARRILAGLGFsk----EMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDL  445 (807)
T KOG0066|consen  373 LKEVADELRAIG---ADSAEARARRILAGLGFSK----EMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDL  445 (807)
T ss_pred             HHHHHHHHHHhc---cccchhHHHHHHhhcCCCh----hHhcCCccccCCceeeehhHHHHHhcCceeeeecCCcccccc
Confidence            643 23344221   2234456788999999863    334566778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeee
Q 007344          143 FQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYA  191 (607)
Q Consensus       143 ~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~  191 (607)
                      .....+-+.|+.+.   +|.++++|+- ..+-..|..|+-|++-++-|+
T Consensus       446 NAVIWLdNYLQgWk---KTLLIVSHDQ-gFLD~VCtdIIHLD~qkLhyY  490 (807)
T KOG0066|consen  446 NAVIWLDNYLQGWK---KTLLIVSHDQ-GFLDSVCTDIIHLDNQKLHYY  490 (807)
T ss_pred             ceeeehhhHHhhhh---heeEEEeccc-chHHHHHHHHhhhhhhhhhhh
Confidence            99999989998874   5999999995 578889999999988777543

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=99.42  E-value=9.9e-11  Score=119.30  Aligned_cols=237  Identities=11%  Similarity=0.070  Sum_probs=160.4

Q ss_pred             HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCC-CC------Ch-hhH--HHHHHHHHHHHHHHHHHHHH
Q 007344          284 WRQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRM-GR------SQ-TSI--QDRMGLLQVAAINTAMAALT  353 (607)
Q Consensus       284 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~ali~G~~f~~~-~~------~~-~~~--~~~~g~lf~~~~~~~~~~~~  353 (607)
                      +++++.+++|+++...|||.....-+++.++.-+++|.+|-.. +.      +. .+.  .--.|++-+..+..++....
T Consensus         1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~   80 (253)
T TIGR03861         1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSL   80 (253)
T ss_pred             ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3688999999999999999999999999999999999888432 11      11 111  11123332222222222111


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHH
Q 007344          354 KTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAM  433 (607)
Q Consensus       354 ~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~  433 (607)
                        -....+|+..+.+=+... .+...+.++|++...-..++..+++..+.+. .|.+.....+......+++..++..++
T Consensus        81 --~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l  156 (253)
T TIGR03861        81 --SMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL  156 (253)
T ss_pred             --HhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence              112233333444445443 5888899999999987777766554444432 366554333443344445566778899


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCc---cchhhhhhcccHHHHHHHHHHHHhhCCCccccCCCCCcc
Q 007344          434 GLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNT---PIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQ  510 (607)
Q Consensus       434 g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~~~~~~~  510 (607)
                      |+++|+++++.+.+..+.++++.+++.+||.+.|.+.+   |.|++|+.++||+.|..|++-.. +.|.           
T Consensus       157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g~-----------  224 (253)
T TIGR03861       157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYGQ-----------  224 (253)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhCC-----------
Confidence            99999999999999999999999999999999998766   88999999999999999988532 2110           


Q ss_pred             cHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 007344          511 TGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEK  550 (607)
Q Consensus       511 ~G~~~L~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~l~~  550 (607)
                                .    -|..+.++.++.+++..++....|+
T Consensus       225 ----------~----~~~~~~~~~~~~~v~~~~~~~~fr~  250 (253)
T TIGR03861       225 ----------L----NLPALGWTLGATTLFTLLAFWGFDP  250 (253)
T ss_pred             ----------c----chhHHHHHHHHHHHHHHHHHHHhhc
Confidence                      0    1455666777777777777766554

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=99.41  E-value=7.5e-11  Score=118.63  Aligned_cols=223  Identities=13%  Similarity=0.062  Sum_probs=145.1

Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhCCCC
Q 007344          299 SRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQD-RMGLLQVAAINTAMAALTKTVGVFPK--ERAIVDRERAKGSY  375 (607)
Q Consensus       299 ~Rd~~~~~~r~~~~i~~ali~G~~f~~~~~~~~~~~~-~~g~lf~~~~~~~~~~~~~~~~~f~~--er~v~~rE~~~g~Y  375 (607)
                      +|||.....-+.+.+++-++++.+|-+. .+.+..+. -.|.+-+..+..+...   .-.....  |+..+.|=+... .
T Consensus         2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~er~~G~l~rl~~~P-~   76 (232)
T TIGR00025         2 LRVGAQIILTMFIPITFMVGLNLLPGGS-VTHNRGATFIPVLMALAAISTAFTG---QAIAVARDRRYGALKRLGATP-L   76 (232)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcCCc-cCCcchhHhhHHHHHHHHHHHHHHH---HHHHHHHHHHhCHHHHHhcCC-C
Confidence            5899888888888888877777777542 11122221 2222212222221111   1122233  344555655554 5


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---CHHHHHHHHH
Q 007344          376 ALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVP---TTEAAMAVGP  452 (607)
Q Consensus       376 ~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i~a~~~---s~~~A~~~~~  452 (607)
                      ++..|+++|++..++..++..+++. +++++.|++.....+ .+++.+.+....+.+++.+++++++   +.+.+..+..
T Consensus        77 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~  154 (232)
T TIGR00025        77 PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVAN  154 (232)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            8899999999988888766655554 556677888654332 3333334444556667777777764   4555588888


Q ss_pred             HHHHHHHHHhccccCCCCccchhhhhhcccHHHHHHHHHHHHhhCCCccccCCCCCcccHHHHHhhcCCCCCCchhHHHH
Q 007344          453 SLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLSFGGSRISDTVMA  532 (607)
Q Consensus       453 ~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~~~~i  532 (607)
                      ++..+++++||.+.|.+.+|.|++|+.+++|++|+.+++-.--..+                      -+....|.++.+
T Consensus       155 ~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~----------------------~~~~~~~~~~~~  212 (232)
T TIGR00025       155 LVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVS----------------------VDTFGAVRDLVV  212 (232)
T ss_pred             HHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCC----------------------CChhhHHHHHHH
Confidence            8889999999999999999999999999999999999875332221                      112345678888


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 007344          533 QSRILLFWYCTTYLLLEK  550 (607)
Q Consensus       533 l~~~~~~~~~l~~~~l~~  550 (607)
                      ++++.+++..++....++
T Consensus       213 l~~~~~v~~~la~~~~~r  230 (232)
T TIGR00025       213 VLAFWVALAALAAIRLRR  230 (232)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            888888888777766554

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.39  E-value=9.9e-13  Score=131.01  Aligned_cols=139  Identities=14%  Similarity=0.140  Sum_probs=91.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      .||||||||||||+|++..-.       |.   .|........+++++.|   +++.+++.|++..+...          
T Consensus        36 ~Gpn~sGKstllr~i~~~~~l-------~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~ls~g~s~----------   92 (216)
T cd03284          36 TGPNMAGKSTYLRQVALIALL-------AQ---IGSFVPASKAEIGVVDR---IFTRIGASDDLAGGRST----------   92 (216)
T ss_pred             ECCCCCChHHHHHHHHHHHHH-------hc---cCCeeccccceecceee---EeccCCchhhhccCcch----------
Confidence            599999999999999875321       21   12222223345777755   56777777766432100          


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHh
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEP---TTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEP---tsGLD~~~~~~i~~~L~~la~  157 (607)
                         .                           ..|+++++-+...+.+|++++||||   |+++|....  ....++.+.+
T Consensus        93 ---f---------------------------~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~  140 (216)
T cd03284          93 ---F---------------------------MVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHE  140 (216)
T ss_pred             ---H---------------------------HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHh
Confidence               0                           1122333333344679999999999   888887552  2345555555


Q ss_pred             c-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      . +.++|++||+.  ++..++|++..+.+|++...+..++
T Consensus       141 ~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~  178 (216)
T cd03284         141 KIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGG  178 (216)
T ss_pred             ccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCe
Confidence            5 88999999984  6778889988888999888776655

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.38  E-value=6.7e-13  Score=129.06  Aligned_cols=82  Identities=12%  Similarity=0.099  Sum_probs=59.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeec
Q 007344          107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM-EALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       107 ~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~-~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                      ...+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++  ++...+|+.--+.
T Consensus        59 ~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~  135 (185)
T smart00534       59 LSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVR  135 (185)
T ss_pred             ccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccce
Confidence            3468887776433333 34599999999999999999888875 566777764 89999999996  4677777644445


Q ss_pred             CCeeeee
Q 007344          185 EGKLVYA  191 (607)
Q Consensus       185 ~G~iv~~  191 (607)
                      .+++...
T Consensus       136 ~~~~~~~  142 (185)
T smart00534      136 NLHMSAD  142 (185)
T ss_pred             EEEEEEE
Confidence            5555443

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.32  E-value=7.6e-13  Score=131.84  Aligned_cols=87  Identities=24%  Similarity=0.413  Sum_probs=65.1

Q ss_pred             HHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344           83 EYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI----ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus        83 ~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~----~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~  158 (607)
                      +.+.+.+...++..           ..+|||||.+++||.-|+    .+.++++||||.++||...+..+.++|+++.+ 
T Consensus       121 ~~~~~~l~~~~i~~-----------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-  188 (220)
T PF02463_consen  121 KDLEELLPEVGISP-----------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-  188 (220)
T ss_dssp             HHHHHHHHCTTTTT-----------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred             cccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            34556666666632           279999999999997764    46789999999999999999999999999875 


Q ss_pred             CCeEEEEecCChhHHHhhhcceeee
Q 007344          159 GHTVICSIHQPRGSVYFKFDDIVLL  183 (607)
Q Consensus       159 g~tvi~~~H~p~~~i~~~~D~v~lL  183 (607)
                      +.-+|++||++  .++..+|+.+.+
T Consensus       189 ~~Q~ii~Th~~--~~~~~a~~~~~v  211 (220)
T PF02463_consen  189 QSQFIITTHNP--EMFEDADKLIGV  211 (220)
T ss_dssp             TSEEEEE-S-H--HHHTT-SEEEEE
T ss_pred             ccccccccccc--cccccccccccc
Confidence            46789999985  578888988776

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.31  E-value=1.8e-12  Score=127.98  Aligned_cols=63  Identities=14%  Similarity=0.183  Sum_probs=52.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCeEEEEecCCh
Q 007344          107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV-MEALRQLAQDGHTVICSIHQPR  170 (607)
Q Consensus       107 ~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i-~~~L~~la~~g~tvi~~~H~p~  170 (607)
                      .+.+|+|++|+ +.+.+++++|+++++|||++|+|+.....+ ...++.+.+.|.++|++||+..
T Consensus        89 ~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~  152 (204)
T cd03282          89 LSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRD  152 (204)
T ss_pred             hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence            45689998865 566778899999999999999999876665 4567778888999999999853

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.28  E-value=7.4e-12  Score=124.46  Aligned_cols=58  Identities=24%  Similarity=0.280  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhcC---CeEEEEecCCh
Q 007344          113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV-MEALRQLAQDG---HTVICSIHQPR  170 (607)
Q Consensus       113 GerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i-~~~L~~la~~g---~tvi~~~H~p~  170 (607)
                      -|.||++++++++.+|+++++|||++|+|+.....+ ...++++.+.|   .++|++||++.
T Consensus        94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~  155 (213)
T cd03281          94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE  155 (213)
T ss_pred             HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence            467899999999999999999999999999875555 56888887642   48999999964

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00634 recN DNA repair protein RecN

Probab=99.27  E-value=7.8e-12  Score=141.57  Aligned_cols=77  Identities=29%  Similarity=0.421  Sum_probs=69.8

Q ss_pred             CCCCHHHHHHHHHHHHHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee
Q 007344          108 RGISGGEKKRLSLACELIAS----PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL  183 (607)
Q Consensus       108 ~~LSGGerqRvsIa~aL~~~----p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL  183 (607)
                      +.+||||+||++||++++..    |+++++||||+|||+.++..+.+.|+++++ +++||++||+|.  +...+|+++++
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l  515 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV  515 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence            57899999999999999985    699999999999999999999999999975 899999999974  34689999999


Q ss_pred             cCCe
Q 007344          184 TEGK  187 (607)
Q Consensus       184 ~~G~  187 (607)
                      ++|.
T Consensus       516 ~k~~  519 (563)
T TIGR00634       516 EKEG  519 (563)
T ss_pred             EEcc
Confidence            8764

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK15066 inner membrane transport permease; Provisional

Probab=99.27  E-value=4.1e-09  Score=107.74  Aligned_cols=241  Identities=13%  Similarity=0.150  Sum_probs=151.3

Q ss_pred             HHHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHhcCC-CC-ChhhHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 007344          284 WRQFWLLLRRAWMQASRDGPT-NKVRARMSIASAIIFGSVFWRM-GR-SQTSIQDR--MGLLQVAAINTAMAALTKTVGV  358 (607)
Q Consensus       284 ~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~i~~ali~G~~f~~~-~~-~~~~~~~~--~g~lf~~~~~~~~~~~~~~~~~  358 (607)
                      |+-++.+.+|+++...||+.. ...-+++.++..+++|.++-.. +. +..+....  .|++-+..+..++   +.....
T Consensus         7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~---~~~~~~   83 (257)
T PRK15066          7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSY---SNVASS   83 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            677889999999999999854 3344455556667777665321 11 11111111  2333222222222   222222


Q ss_pred             HHHHHHH-HHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007344          359 FPKERAI-VDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTV  437 (607)
Q Consensus       359 f~~er~v-~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i  437 (607)
                      +..+|.. ..++...--.++..+.+++++...-..+++.++...+.+...|.+..  ....++..+++..++....|+++
T Consensus        84 i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~  161 (257)
T PRK15066         84 FFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLIN  161 (257)
T ss_pred             HHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333311 01111222368888999999987766666655554444444466543  22233333333333344458999


Q ss_pred             HHccCCHHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhcccHHHHHHHHHHHHhhCCCccccCCCCCcccHHHHHh
Q 007344          438 GAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALE  517 (607)
Q Consensus       438 ~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~~~~~~~~G~~~L~  517 (607)
                      +++.++.+.+..+.++++.+++..||.+.|.+++|.|++|+.++||+.|..|++=..-+ +                   
T Consensus       162 a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~-g-------------------  221 (257)
T PRK15066        162 AVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFL-G-------------------  221 (257)
T ss_pred             HHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHc-C-------------------
Confidence            99999998888999999999999999999999999999999999999999998843211 1                   


Q ss_pred             hcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007344          518 RLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKK  552 (607)
Q Consensus       518 ~~g~~~~~~~~~~~il~~~~~~~~~l~~~~l~~~~  552 (607)
                         .+....|.++++++++.+++.+++....|+++
T Consensus       222 ---~~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~  253 (257)
T PRK15066        222 ---ISDVPLWLAFAVLLVFIVVLYLLAWYLLERGR  253 (257)
T ss_pred             ---CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence               11123477888999999999998888776544

>PRK10869 recombination and repair protein; Provisional

Probab=99.24  E-value=1.8e-11  Score=137.71  Aligned_cols=76  Identities=29%  Similarity=0.404  Sum_probs=69.1

Q ss_pred             CCCCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee
Q 007344          108 RGISGGEKKRLSLACELIA----SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL  183 (607)
Q Consensus       108 ~~LSGGerqRvsIa~aL~~----~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL  183 (607)
                      +.+||||+||++||++++.    +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|.  +...+|+.+.+
T Consensus       429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v  505 (553)
T PRK10869        429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV  505 (553)
T ss_pred             hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence            4589999999999999997    5899999999999999999999999999975 689999999984  45789999999


Q ss_pred             cCC
Q 007344          184 TEG  186 (607)
Q Consensus       184 ~~G  186 (607)
                      .++
T Consensus       506 ~k~  508 (553)
T PRK10869        506 SKE  508 (553)
T ss_pred             ecc
Confidence            765

>TIGR00618 sbcc exonuclease SbcC

Probab=99.23  E-value=2.3e-11  Score=147.10  Aligned_cols=82  Identities=18%  Similarity=0.151  Sum_probs=74.9

Q ss_pred             CCcCCCCCHHHHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHH
Q 007344          104 DAKVRGISGGEKKRLSLACELIA----------SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV  173 (607)
Q Consensus       104 ~~~~~~LSGGerqRvsIa~aL~~----------~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i  173 (607)
                      ++.++.|||||++||+||++|+.          +|++||+||||+|||+.+...+++.|+++...|++|++++|++. ..
T Consensus       945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~ 1023 (1042)
T TIGR00618       945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FR 1023 (1042)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HH
Confidence            45688999999999999999986          79999999999999999999999999999888999999999964 67


Q ss_pred             HhhhcceeeecCC
Q 007344          174 YFKFDDIVLLTEG  186 (607)
Q Consensus       174 ~~~~D~v~lL~~G  186 (607)
                      ...+|+|.+++.|
T Consensus      1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred             HhhCCEEEEEECC
Confidence            8889999999643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.22  E-value=2e-11  Score=138.39  Aligned_cols=79  Identities=25%  Similarity=0.342  Sum_probs=69.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHh----------hCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHH
Q 007344          106 KVRGISGGEKKRLSLACELI----------ASPSVIYADEPT-TGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY  174 (607)
Q Consensus       106 ~~~~LSGGerqRvsIa~aL~----------~~p~illLDEPt-sGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~  174 (607)
                      .+..||||||||++||++|+          .+|++++||||| ++||+.....+.+.|+++  +|.|||+++|++.  ..
T Consensus       465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~  540 (562)
T PHA02562        465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP  540 (562)
T ss_pred             ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence            45789999999999999887          599999999998 789999999999999998  5899999999964  45


Q ss_pred             hhhcceeeecC-Cee
Q 007344          175 FKFDDIVLLTE-GKL  188 (607)
Q Consensus       175 ~~~D~v~lL~~-G~i  188 (607)
                      ..+|++++|.+ |+.
T Consensus       541 ~~~d~~~~l~~~~~~  555 (562)
T PHA02562        541 QKFDRHLKMEKVGRF  555 (562)
T ss_pred             hhhhcEEEEEEECCe
Confidence            67899999975 554

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.21  E-value=1.9e-11  Score=121.40  Aligned_cols=45  Identities=24%  Similarity=0.315  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHhhCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 007344          113 GEKKRLSLACELIASPSVIYADEPT-----TGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus       113 GerqRvsIa~aL~~~p~illLDEPt-----sGLD~~~~~~i~~~L~~la~  157 (607)
                      -|++++.||++++.+|+++++||||     +|||+.+...+.+.++++++
T Consensus       156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            3999999999999999999999999     99999999999999999974

>TIGR01069 mutS2 MutS2 family protein

Probab=99.13  E-value=5.2e-11  Score=138.44  Aligned_cols=64  Identities=19%  Similarity=0.231  Sum_probs=56.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCeEEEEecCChh
Q 007344          107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV-MEALRQLAQDGHTVICSIHQPRG  171 (607)
Q Consensus       107 ~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i-~~~L~~la~~g~tvi~~~H~p~~  171 (607)
                      ...+|+|+++++.|++.+ .+|+++++|||++|+|+.....+ ..+++.+++.|.++|++||+...
T Consensus       383 LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL  447 (771)
T TIGR01069       383 LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL  447 (771)
T ss_pred             hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence            346999999999998876 89999999999999999999998 57888888889999999999643

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.12  E-value=4.4e-10  Score=126.27  Aligned_cols=135  Identities=25%  Similarity=0.408  Sum_probs=103.9

Q ss_pred             CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHH------HHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC
Q 007344           55 FSQLTVRETLSLAAELQLPEILSVEERDEYVNSL------LFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP  128 (607)
Q Consensus        55 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p  128 (607)
                      +..+++.|.+.|...+.+.. ....-.+..+.++      |-.+||.-    .-.++....|||||.||+-+|..+=++=
T Consensus       426 ~~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~Y----LtL~R~a~TLSGGEaQRIRLAtqiGS~L  500 (935)
T COG0178         426 ISEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGY----LTLSRSAGTLSGGEAQRIRLATQIGSGL  500 (935)
T ss_pred             HhhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCc----ccccccCCCcChhHHHHHHHHHHhcccc
Confidence            45689999999988776421 1111122223333      33456632    2235567899999999999999997763


Q ss_pred             --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344          129 --SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD  196 (607)
Q Consensus       129 --~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~  196 (607)
                        =+++||||+-||-+..-.++++.|++|++.|-|+|++.||+  +....+|+|+=+      +.|++++.|++++
T Consensus       501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~  574 (935)
T COG0178         501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEE  574 (935)
T ss_pred             eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHH
Confidence              46799999999999999999999999999999999999995  567779999988      4689999999877

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.12  E-value=1.2e-10  Score=122.36  Aligned_cols=95  Identities=26%  Similarity=0.291  Sum_probs=81.8

Q ss_pred             HHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEE
Q 007344           84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI  163 (607)
Q Consensus        84 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi  163 (607)
                      ..+++++.+.|.+..|.     -+..|||||-||.+||++.+++.++.++|||.+-||...+.+-...++.+....+=||
T Consensus       193 ~~~~~~~~~~L~~~~~r-----e~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiI  267 (592)
T KOG0063|consen  193 NKEEVCDQLDLNNLLDR-----EVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYII  267 (592)
T ss_pred             cHHHHHHHHHHhhHHHh-----hhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEE
Confidence            45677788888655544     4567999999999999999999999999999999999999999999999998889999


Q ss_pred             EEecCChhHHHhhhcceeeec
Q 007344          164 CSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       164 ~~~H~p~~~i~~~~D~v~lL~  184 (607)
                      ++.||.+ -+-.+.|-+..|.
T Consensus       268 VVEHDLs-VLDylSDFiCcLY  287 (592)
T KOG0063|consen  268 VVEHDLS-VLDYLSDFICCLY  287 (592)
T ss_pred             EEEeech-HHHhhhcceeEEe
Confidence            9999965 5556678888885

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.08  E-value=3.2e-10  Score=112.59  Aligned_cols=64  Identities=33%  Similarity=0.516  Sum_probs=54.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCCh
Q 007344          107 VRGISGGEKKRLSLACELIASP---SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR  170 (607)
Q Consensus       107 ~~~LSGGerqRvsIa~aL~~~p---~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~  170 (607)
                      ...+|.|+||.+.|...|...+   .++++|||-++|+|..+..+++.|+++++.+.-+|+|||.|.
T Consensus       234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~  300 (303)
T PF13304_consen  234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF  300 (303)
T ss_dssp             GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred             eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence            4567999999999999988876   899999999999999999999999888777889999999874

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.06  E-value=9.5e-10  Score=106.24  Aligned_cols=81  Identities=17%  Similarity=0.071  Sum_probs=66.3

Q ss_pred             CCcCCCCCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCeEEEEecCChh---
Q 007344          104 DAKVRGISGGEKK------RLSLACELIASPSVIYADEPTTGLD---AFQAEKVMEALRQLAQDGHTVICSIHQPRG---  171 (607)
Q Consensus       104 ~~~~~~LSGGerq------RvsIa~aL~~~p~illLDEPtsGLD---~~~~~~i~~~L~~la~~g~tvi~~~H~p~~---  171 (607)
                      +..+..+|+|++|      +.........+|+++++|||++.+|   ......+.+.++.+++.|.|+|+++|....   
T Consensus        66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~  145 (187)
T cd01124          66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGT  145 (187)
T ss_pred             ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCc
Confidence            3455678999998      4445555667999999999999999   888888899999998889999999998653   


Q ss_pred             -----HHHhhhcceeeec
Q 007344          172 -----SVYFKFDDIVLLT  184 (607)
Q Consensus       172 -----~i~~~~D~v~lL~  184 (607)
                           .+..++|.++.|+
T Consensus       146 ~~~~~~~~~~aD~ii~l~  163 (187)
T cd01124         146 GFGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             ccCcCceeEeeeEEEEEE
Confidence                 2567889999886

A related protein is found in archaea.

>PRK03918 chromosome segregation protein; Provisional

Probab=99.04  E-value=4.2e-10  Score=134.25  Aligned_cols=78  Identities=23%  Similarity=0.291  Sum_probs=68.8

Q ss_pred             CcCCCCCHHHHHH------HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhc
Q 007344          105 AKVRGISGGEKKR------LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD  178 (607)
Q Consensus       105 ~~~~~LSGGerqR------vsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D  178 (607)
                      ..+..|||||+++      +++|++++.+|+++++||||+|||+..+..+.+.|+.++..+.+||++||++  .+...||
T Consensus       784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d  861 (880)
T PRK03918        784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAAD  861 (880)
T ss_pred             CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCC
Confidence            3567899999995      5555678899999999999999999999999999999887788999999996  3567899


Q ss_pred             ceeeec
Q 007344          179 DIVLLT  184 (607)
Q Consensus       179 ~v~lL~  184 (607)
                      ++++|.
T Consensus       862 ~~~~l~  867 (880)
T PRK03918        862 YVIRVS  867 (880)
T ss_pred             eEEEEE
Confidence            999996

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.03  E-value=6.9e-10  Score=133.92  Aligned_cols=80  Identities=25%  Similarity=0.215  Sum_probs=69.0

Q ss_pred             CcCCCCCHHHHHHHHHHHHHhh--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhh
Q 007344          105 AKVRGISGGEKKRLSLACELIA--------SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK  176 (607)
Q Consensus       105 ~~~~~LSGGerqRvsIa~aL~~--------~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~  176 (607)
                      +.++.|||||++|++||++|+.        +|++||+||||+|||+.+...+++.|..+++.|+||+++||.+ .....+
T Consensus       945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i 1023 (1047)
T PRK10246        945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERI 1023 (1047)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhc
Confidence            5688999999999999999996        8999999999999999999999999999998899999999974 334444


Q ss_pred             hcceeeecC
Q 007344          177 FDDIVLLTE  185 (607)
Q Consensus       177 ~D~v~lL~~  185 (607)
                      -.+|.|-+.
T Consensus      1024 ~~qi~V~k~ 1032 (1047)
T PRK10246       1024 PVQIKVKKI 1032 (1047)
T ss_pred             cceEEEEEC
Confidence            455555543

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.00  E-value=1.2e-09  Score=103.81  Aligned_cols=68  Identities=24%  Similarity=0.375  Sum_probs=56.4

Q ss_pred             ccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCCh
Q 007344          102 VGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR  170 (607)
Q Consensus       102 vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~  170 (607)
                      +|......-|.||-=---+.+. .++--+++||||-++|.+.-+.+++..|+++++.|.-+|+.||.|-
T Consensus       122 ~~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi  189 (233)
T COG3910         122 YGGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI  189 (233)
T ss_pred             cCCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence            4455567789999654444433 4577899999999999999999999999999999999999999884

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.97  E-value=5.3e-10  Score=130.37  Aligned_cols=82  Identities=15%  Similarity=0.191  Sum_probs=65.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecC
Q 007344          107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME-ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTE  185 (607)
Q Consensus       107 ~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~-~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  185 (607)
                      ...+|+|+++++.|++++ ++|+++++|||++|+|+.....+.. +++.+.+.|.++|++||++. .....+|+..+. +
T Consensus       388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~~v~-~  464 (782)
T PRK00409        388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNREGVE-N  464 (782)
T ss_pred             hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCCCeE-E
Confidence            457999999999999988 8999999999999999999988864 67778888999999999954 333344554443 4


Q ss_pred             Ceeeee
Q 007344          186 GKLVYA  191 (607)
Q Consensus       186 G~iv~~  191 (607)
                      +.+.+.
T Consensus       465 ~~~~~d  470 (782)
T PRK00409        465 ASVEFD  470 (782)
T ss_pred             EEEEEe
Confidence            556553

>PRK13695 putative NTPase; Provisional

Probab=98.96  E-value=5.4e-10  Score=107.40  Aligned_cols=81  Identities=20%  Similarity=0.215  Sum_probs=65.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeec
Q 007344          107 VRGISGGEKKRLSLACELIASPSVIYADEP--TTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       107 ~~~LSGGerqRvsIa~aL~~~p~illLDEP--tsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                      ...+||+|+.+..+.+..+.+|+++++|||  +.++|    ..+.+.+.++.+.|+++|+++|+.  .+....|++..+.
T Consensus        76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~  149 (174)
T PRK13695         76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRP  149 (174)
T ss_pred             EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccC
Confidence            446999999999999999999999999995  44444    445677777667799999999983  4556789999999


Q ss_pred             CCeeeeeCC
Q 007344          185 EGKLVYAGP  193 (607)
Q Consensus       185 ~G~iv~~G~  193 (607)
                      +|++...-+
T Consensus       150 ~~~i~~~~~  158 (174)
T PRK13695        150 GGRVYELTP  158 (174)
T ss_pred             CcEEEEEcc
Confidence            999977643

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.93  E-value=2e-09  Score=109.36  Aligned_cols=77  Identities=18%  Similarity=0.173  Sum_probs=64.3

Q ss_pred             cCCCCCHHH--------HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCCeEEEEecCChhHHHhh
Q 007344          106 KVRGISGGE--------KKRLSLACELIASPSVIYADEPTTGLDAFQAEK-VMEALRQLAQDGHTVICSIHQPRGSVYFK  176 (607)
Q Consensus       106 ~~~~LSGGe--------rqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~-i~~~L~~la~~g~tvi~~~H~p~~~i~~~  176 (607)
                      ..+.+|||+        +||+++|+++..+++|.+|  ||+.+|+.+... ++  +.++...+.|.|+.+|+.  .....
T Consensus       126 ~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~l--a~~~~  199 (249)
T cd01128         126 SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRL--AERRI  199 (249)
T ss_pred             CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHH--hhCCC
Confidence            345689999        9999999999999999999  999999766554 55  556655688999999985  34567


Q ss_pred             hcceeeecCCee
Q 007344          177 FDDIVLLTEGKL  188 (607)
Q Consensus       177 ~D~v~lL~~G~i  188 (607)
                      +|.|.+|+.|+.
T Consensus       200 ~paI~vl~s~sr  211 (249)
T cd01128         200 FPAIDILKSGTR  211 (249)
T ss_pred             CCeEEEcCCCCc
Confidence            899999999987

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.92  E-value=6.8e-09  Score=104.50  Aligned_cols=76  Identities=14%  Similarity=0.140  Sum_probs=53.6

Q ss_pred             CCCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCeEEEEecCChh------HHH
Q 007344          109 GISGGEKKRLSLACELI----ASPSVIYADEPTTGL----DAFQAEKVMEALRQLAQDGHTVICSIHQPRG------SVY  174 (607)
Q Consensus       109 ~LSGGerqRvsIa~aL~----~~p~illLDEPtsGL----D~~~~~~i~~~L~~la~~g~tvi~~~H~p~~------~i~  174 (607)
                      .+|+++.++-.+.+.+-    .+|+++++||||+++    |+.....+.+.+++++++|.|+++++|+...      .+.
T Consensus        95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~  174 (230)
T PRK08533         95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILR  174 (230)
T ss_pred             cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEE
Confidence            36666655544443332    369999999999999    8888889999999998888887776654321      123


Q ss_pred             hhhcceeeec
Q 007344          175 FKFDDIVLLT  184 (607)
Q Consensus       175 ~~~D~v~lL~  184 (607)
                      .++|-++.|+
T Consensus       175 ~~~DgvI~L~  184 (230)
T PRK08533        175 TAATMLIRLE  184 (230)
T ss_pred             EeeeEEEEEE
Confidence            4567777775

>TIGR00606 rad50 rad50

Probab=98.92  E-value=4.1e-09  Score=130.29  Aligned_cols=76  Identities=29%  Similarity=0.312  Sum_probs=64.1

Q ss_pred             cccccCCcCCCCCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----hcCCeEEEEec
Q 007344           99 DSNVGDAKVRGISGGEKK------RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-----QDGHTVICSIH  167 (607)
Q Consensus        99 d~~vg~~~~~~LSGGerq------RvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-----~~g~tvi~~~H  167 (607)
                      |+.++  ..+.|||||||      |++||++++.+|++|+|||||+|||+.+...+.+.|.++.     ..|.+||++||
T Consensus      1191 ~~~~~--~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606      1191 DTALD--MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred             CeecC--CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence            44443  34689999999      9999999999999999999999999999999999998874     24789999999


Q ss_pred             CChhHHHhhh
Q 007344          168 QPRGSVYFKF  177 (607)
Q Consensus       168 ~p~~~i~~~~  177 (607)
                      ++. .+..+|
T Consensus      1269 d~~-~~~~~~ 1277 (1311)
T TIGR00606      1269 DED-FVELLG 1277 (1311)
T ss_pred             CHH-HHHHHh
Confidence            964 555553

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK01156 chromosome segregation protein; Provisional

Probab=98.91  E-value=3.3e-09  Score=126.81  Aligned_cols=77  Identities=23%  Similarity=0.252  Sum_probs=66.6

Q ss_pred             cCCCCCHHHHHHHHH------HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hc-C-CeEEEEecCChhHHHhh
Q 007344          106 KVRGISGGEKKRLSL------ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QD-G-HTVICSIHQPRGSVYFK  176 (607)
Q Consensus       106 ~~~~LSGGerqRvsI------a~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~-g-~tvi~~~H~p~~~i~~~  176 (607)
                      .+..||||||+|++|      |++++.+|++++|||||+|||+.....+.+.++... .. | .++|++||++.  ....
T Consensus       798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~  875 (895)
T PRK01156        798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV  875 (895)
T ss_pred             ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence            578899999999976      488999999999999999999999999999998654 43 3 48999999974  4478


Q ss_pred             hcceeeec
Q 007344          177 FDDIVLLT  184 (607)
Q Consensus       177 ~D~v~lL~  184 (607)
                      ||+++.+.
T Consensus       876 ~d~ii~~~  883 (895)
T PRK01156        876 ADVAYEVK  883 (895)
T ss_pred             cCeEEEEE
Confidence            99999996

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=98.88  E-value=2.2e-07  Score=94.51  Aligned_cols=168  Identities=16%  Similarity=0.155  Sum_probs=119.3

Q ss_pred             HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-Hc
Q 007344          362 ERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVG-AM  440 (607)
Q Consensus       362 er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i~-a~  440 (607)
                      ++..+.|=..+..-+ ..+++++.+.......+...+...++.+..|... ...+..+..++.+..+...++|.+++ ..
T Consensus       116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~~  193 (286)
T COG0842         116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPF-LGSLLLLLLLLLLLLLATVALGLLLSTFA  193 (286)
T ss_pred             hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444333 5566666666665555555444445555556332 23455566666666777788888666 36


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhcccHHHHHHHHHHHHhhCCCccccCCCCCcccHHHHHhhcC
Q 007344          441 VPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALERLS  520 (607)
Q Consensus       441 ~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~~~~~~~~G~~~L~~~g  520 (607)
                      .++.+.+..++.++..++..++|.+.|.+.+|.|++|+.+++|..|+.+++-.....+...                   
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~~-------------------  254 (286)
T COG0842         194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRN-------------------  254 (286)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCch-------------------
Confidence            6778888888889999999999999999999999999999999999999986544432111                   


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCc
Q 007344          521 FGGSRISDTVMAQSRILLFWYCTTYLLLEKKKP  553 (607)
Q Consensus       521 ~~~~~~~~~~~il~~~~~~~~~l~~~~l~~~~~  553 (607)
                         ...+.++.++.++.+++.+++...++++..
T Consensus       255 ---~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~  284 (286)
T COG0842         255 ---DGIWISLLILLLFAVVFLLLGLLLLRRRRK  284 (286)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence               126888999999999999999998887654

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.86  E-value=4.1e-09  Score=98.45  Aligned_cols=64  Identities=22%  Similarity=0.229  Sum_probs=49.1

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhH
Q 007344          109 GISGGEKKRLSLACELIASPSVIYADEPTT----------GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS  172 (607)
Q Consensus       109 ~LSGGerqRvsIa~aL~~~p~illLDEPts----------GLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~  172 (607)
                      ..+.++.++...+.+...+|+++++||+++          +.|......+.+++....+.+.|+|+++|.+...
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~  140 (165)
T cd01120          67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD  140 (165)
T ss_pred             CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence            345666677888888899999999999994          5555556666666666656789999999987543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.84  E-value=3.8e-09  Score=129.31  Aligned_cols=77  Identities=22%  Similarity=0.252  Sum_probs=67.6

Q ss_pred             CcCCCCCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcce
Q 007344          105 AKVRGISGGEKKRLSLACELI----ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI  180 (607)
Q Consensus       105 ~~~~~LSGGerqRvsIa~aL~----~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v  180 (607)
                      ..++.||||||+|++||++++    .+|++++|||||+|||+.+...+.++|+++++ +.++|++||++.  ....||++
T Consensus      1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168      1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred             ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhH
Confidence            467899999999999999985    67799999999999999999999999999875 478999999975  34679999


Q ss_pred             eeec
Q 007344          181 VLLT  184 (607)
Q Consensus       181 ~lL~  184 (607)
                      +.+.
T Consensus      1162 ~~~~ 1165 (1179)
T TIGR02168      1162 YGVT 1165 (1179)
T ss_pred             eeee
Confidence            8764

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR01248 drrC daunorubicin resistance protein C

Probab=98.81  E-value=1.3e-07  Score=89.07  Aligned_cols=132  Identities=12%  Similarity=-0.049  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHH--HHHHHHHHHHHHHHHHHHHHH
Q 007344          358 VFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLS--RFGKFCGIVTVESFAASAMGL  435 (607)
Q Consensus       358 ~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~--~F~~f~~~~~l~~~~~~~~g~  435 (607)
                      ...+|+.++.|-+..- -++..|+++|++...-..+++.++..++.+. .|.+....  ..+.++++..+...+...++.
T Consensus        13 ~~dr~~G~~~~l~~tP-~~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~   90 (152)
T TIGR01248        13 TIDREIGLLSRLWVLP-IHRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVM   90 (152)
T ss_pred             HHHHHhHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778888888776 5889999999999998888888766666654 48776532  222333333444555556666


Q ss_pred             HHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhcccHHHHHHHHHH
Q 007344          436 TVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLC  492 (607)
Q Consensus       436 ~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~eal~  492 (607)
                      .++...++.+..+ ...++..++++.+|.+.|.+++|.|++|+.+++|++|+.+++=
T Consensus        91 ~~a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R  146 (152)
T TIGR01248        91 AMALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA  146 (152)
T ss_pred             HHHHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence            6665556655444 4566778888999999999999999999999999999999884

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.79  E-value=6.8e-08  Score=113.90  Aligned_cols=68  Identities=21%  Similarity=0.203  Sum_probs=59.4

Q ss_pred             hhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCeEEEEecCChhHH--------HhhhcceeeecCCeeeeeC
Q 007344          125 IASPSVIYADEPTTGL-DAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV--------YFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       125 ~~~p~illLDEPtsGL-D~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i--------~~~~D~v~lL~~G~iv~~G  192 (607)
                      ..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||++....        .+.||.+++|.+|++...|
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~  726 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPG  726 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccc
Confidence            5799999999999999 799999999999999999999999999986432        3679999999999876554

>PRK00064 recF recombination protein F; Reviewed

Probab=98.77  E-value=1.6e-08  Score=108.49  Aligned_cols=79  Identities=23%  Similarity=0.294  Sum_probs=65.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhh
Q 007344          106 KVRGISGGEKKRLSLACELI---------ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK  176 (607)
Q Consensus       106 ~~~~LSGGerqRvsIa~aL~---------~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~  176 (607)
                      ..+.+|.||+|++.||+.|+         .+|+|++||||+++||+..+..+++.+.++   +..+++++|++. .+...
T Consensus       270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~  345 (361)
T PRK00064        270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADL  345 (361)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhh
Confidence            34679999999999999886         699999999999999999999999988764   457889999854 34444


Q ss_pred             h--cceeeecCCee
Q 007344          177 F--DDIVLLTEGKL  188 (607)
Q Consensus       177 ~--D~v~lL~~G~i  188 (607)
                      +  ++++.+++|++
T Consensus       346 ~~~~~i~~v~~G~i  359 (361)
T PRK00064        346 LENAKIFHVEQGKI  359 (361)
T ss_pred             hccCcEEEEeCCEE
Confidence            3  47888999986

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.76  E-value=3.6e-08  Score=98.58  Aligned_cols=56  Identities=20%  Similarity=0.198  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhc-CCeEEEEecCCh
Q 007344          115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKV-MEALRQLAQD-GHTVICSIHQPR  170 (607)
Q Consensus       115 rqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i-~~~L~~la~~-g~tvi~~~H~p~  170 (607)
                      -+|++-...-+++++++++|||.+|.|+.....+ ...++.+.+. +.++|++||++.
T Consensus        98 ~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~  155 (222)
T cd03287          98 LSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS  155 (222)
T ss_pred             HHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence            3344444444668999999999999998777775 5677777765 889999999964

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.76  E-value=8.1e-08  Score=104.96  Aligned_cols=154  Identities=19%  Similarity=0.234  Sum_probs=95.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeC---CC----------ccceEEEEccCCCCCCCCCHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS---SN----------KAYKFAYVRQEDLFFSQLTVRETLSLA   67 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~---~~----------~~~~i~yv~Q~~~l~~~lTV~E~l~~~   67 (607)
                      +|+||+|||||+++|+|..+++     .|.|.+.|+.-   .+          ..+.+++|.+.+.-.   -.+....+.
T Consensus       164 ~G~sG~GKStLl~~I~~~~~~~-----~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~---~~r~~~~~~  235 (438)
T PRK07721        164 FAGSGVGKSTLMGMIARNTSAD-----LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPA---LMRIKGAYT  235 (438)
T ss_pred             ECCCCCCHHHHHHHHhcccCCC-----eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCH---HHHHHHHHH
Confidence            5999999999999999998876     68888865432   21          124588887654311   011111111


Q ss_pred             HHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHH-HHHhhCCCeEEEeCC--CCCCCHHH
Q 007344           68 AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA-CELIASPSVIYADEP--TTGLDAFQ  144 (607)
Q Consensus        68 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa-~aL~~~p~illLDEP--tsGLD~~~  144 (607)
                      +-              .+.+.+..-|-    |-.+   ...+++     |.+-| |++.     +.+.||  |+|+|+..
T Consensus       236 a~--------------~iAEyfr~~g~----~Vll---~~Dslt-----r~A~A~rEis-----l~~ge~P~~~G~dp~~  284 (438)
T PRK07721        236 AT--------------AIAEYFRDQGL----NVML---MMDSVT-----RVAMAQREIG-----LAVGEPPTTKGYTPSV  284 (438)
T ss_pred             HH--------------HHHHHHHHCCC----cEEE---EEeChH-----HHHHHHHHHH-----HhcCCCCccccCCHHH
Confidence            10              11122222231    0100   011222     11111 1111     123564  77999999


Q ss_pred             HHHHHHHHHHHHh--cCC-----eEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          145 AEKVMEALRQLAQ--DGH-----TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       145 ~~~i~~~L~~la~--~g~-----tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ...+.++++++..  +|.     ||++.+|+..+   ..+|++..+.+|+++..+...+
T Consensus       285 ~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~  340 (438)
T PRK07721        285 FAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN  340 (438)
T ss_pred             HHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence            9999999999973  675     99999999763   7799999999999999998765

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.74  E-value=5.1e-08  Score=102.47  Aligned_cols=67  Identities=19%  Similarity=0.270  Sum_probs=51.8

Q ss_pred             HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-eEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH-TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       120 Ia~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~-tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +..+|-.+|+++++|||.+       .+..+.++.+. .|. +++.|+|..+  .....||+..|..|++...|.+.+
T Consensus       211 l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~-~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~  278 (308)
T TIGR02788       211 LQSCLRMRPDRIILGELRG-------DEAFDFIRAVN-TGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFA  278 (308)
T ss_pred             HHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh-cCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHH
Confidence            4445677999999999996       34566777765 455 6799999875  455689999999999888887665

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.73  E-value=1.7e-08  Score=123.74  Aligned_cols=76  Identities=22%  Similarity=0.231  Sum_probs=67.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhccee
Q 007344          106 KVRGISGGEKKRLSLACELIA----SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIV  181 (607)
Q Consensus       106 ~~~~LSGGerqRvsIa~aL~~----~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~  181 (607)
                      .+..||||||++++||.+++.    .|++++||||++|||+.....+.+.|++++. +..+|++||++.  ....||+++
T Consensus      1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169      1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred             cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence            467899999999999999985    6799999999999999999999999999865 478999999963  568899998


Q ss_pred             eec
Q 007344          182 LLT  184 (607)
Q Consensus       182 lL~  184 (607)
                      .+.
T Consensus      1148 ~~~ 1150 (1164)
T TIGR02169      1148 GVT 1150 (1164)
T ss_pred             eEE
Confidence            885

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=98.72  E-value=2.4e-08  Score=119.33  Aligned_cols=77  Identities=23%  Similarity=0.364  Sum_probs=66.7

Q ss_pred             CCCCCHHHHH------HHHHHHHHhhC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-eEEEEecCChhHH
Q 007344          107 VRGISGGEKK------RLSLACELIAS-----P-SVIYADEPTTGLDAFQAEKVMEALRQLAQDGH-TVICSIHQPRGSV  173 (607)
Q Consensus       107 ~~~LSGGerq------RvsIa~aL~~~-----p-~illLDEPtsGLD~~~~~~i~~~L~~la~~g~-tvi~~~H~p~~~i  173 (607)
                      +..||||||+      |++++++++.+     | +++++||||++||+.....+++.|+.+...|. +||++||++.  .
T Consensus       779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~  856 (880)
T PRK02224        779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L  856 (880)
T ss_pred             hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence            5789999999      89999988864     3 67999999999999999999999999987665 8999999974  3


Q ss_pred             HhhhcceeeecC
Q 007344          174 YFKFDDIVLLTE  185 (607)
Q Consensus       174 ~~~~D~v~lL~~  185 (607)
                      ...+|+++.+..
T Consensus       857 ~~~ad~~~~~~~  868 (880)
T PRK02224        857 VGAADDLVRVEK  868 (880)
T ss_pred             HHhcCeeEEeec
Confidence            467999999964

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.66  E-value=1e-07  Score=93.77  Aligned_cols=57  Identities=25%  Similarity=0.292  Sum_probs=42.6

Q ss_pred             HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeec
Q 007344          119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       119 sIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                      +|+++|..+|+++++|||.   |..+...    +.+.+..|+.++.|+|.++  .....||++.+.
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~~----~l~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~  122 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIRL----ALTAAETGHLVMSTLHTNS--AAKTIDRIIDVF  122 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHHH----HHHHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence            4778888999999999996   5554333    3345677999999999975  345679987763

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.57  E-value=5.1e-08  Score=97.21  Aligned_cols=57  Identities=18%  Similarity=0.153  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhc-CCeEEEEecCCh
Q 007344          114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA-LRQLAQD-GHTVICSIHQPR  170 (607)
Q Consensus       114 erqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~-L~~la~~-g~tvi~~~H~p~  170 (607)
                      |-+|++-....+++|+++++|||.+|+|+.....+... ++.+.+. +.++|++||++.
T Consensus        96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e  154 (218)
T cd03286          96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS  154 (218)
T ss_pred             HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence            33444444444578999999999999999999998887 7778765 899999999964

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.54  E-value=5.7e-07  Score=90.61  Aligned_cols=76  Identities=21%  Similarity=0.129  Sum_probs=58.4

Q ss_pred             CCCHHHHHHHHHHHHHhh--CCCeEEEeCCCCC---CCHHHHHHHHHHHHHHHhcCCeEEEEecCChh------HHHhhh
Q 007344          109 GISGGEKKRLSLACELIA--SPSVIYADEPTTG---LDAFQAEKVMEALRQLAQDGHTVICSIHQPRG------SVYFKF  177 (607)
Q Consensus       109 ~LSGGerqRvsIa~aL~~--~p~illLDEPtsG---LD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~------~i~~~~  177 (607)
                      ..|.++++.+.....++.  +|+++++||||+.   .|.....++++.++.+++.|.|+++++|++..      .+..++
T Consensus       100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~  179 (234)
T PRK06067        100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSIC  179 (234)
T ss_pred             cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence            356788999999999997  9999999999964   55555556666677777889999999998643      145566


Q ss_pred             cceeeec
Q 007344          178 DDIVLLT  184 (607)
Q Consensus       178 D~v~lL~  184 (607)
                      |-++.|+
T Consensus       180 DgvI~L~  186 (234)
T PRK06067        180 DVYLKLR  186 (234)
T ss_pred             EEEEEEE
Confidence            7777775

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.54  E-value=3.6e-07  Score=92.46  Aligned_cols=130  Identities=27%  Similarity=0.380  Sum_probs=78.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC-CccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS-NKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +||+|+|||||+-.++=-..       +|. .+.|.... ....++.|+.=++                        +.+
T Consensus         7 ~g~~G~GKS~lal~la~~va-------~G~-~~~g~~~~~~~~~~Vlyi~~Ed------------------------~~~   54 (239)
T cd01125           7 VAPGGTGKSSLLLVLALAMA-------LGK-NLFGGGLKVTEPGRVVYLSAED------------------------PRE   54 (239)
T ss_pred             EcCCCCCHHHHHHHHHHHHh-------cCc-cccCCccccCCCceEEEEECCC------------------------CHH
Confidence            59999999999888864322       222 11221011 1123456654332                        123


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHH----------------HHhhCCCeEEEeCCCC-----
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLAC----------------ELIASPSVIYADEPTT-----  138 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~----------------aL~~~p~illLDEPts-----  138 (607)
                      +..+++..+...+++.+..+...       +.+|+.|++.+++                ....+|+++++| |++     
T Consensus        55 ~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~  126 (239)
T cd01125          55 EIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGV  126 (239)
T ss_pred             HHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCC
Confidence            34445556666665533322111       1244555544433                235799999999 765     


Q ss_pred             -CCCHHHHHHHHHHHHHHHh-cCCeEEEEecCCh
Q 007344          139 -GLDAFQAEKVMEALRQLAQ-DGHTVICSIHQPR  170 (607)
Q Consensus       139 -GLD~~~~~~i~~~L~~la~-~g~tvi~~~H~p~  170 (607)
                       .+|+.....+++.|+++++ .|.||+++.|...
T Consensus       127 ~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K  160 (239)
T cd01125         127 SENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK  160 (239)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence             4799999999999999985 5889999999853

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR00611 recf recF protein

Probab=98.50  E-value=1.7e-07  Score=100.63  Aligned_cols=60  Identities=23%  Similarity=0.277  Sum_probs=55.2

Q ss_pred             CCCCHHHHHHHHHHHHHhh---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCCh
Q 007344          108 RGISGGEKKRLSLACELIA---------SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR  170 (607)
Q Consensus       108 ~~LSGGerqRvsIa~aL~~---------~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~  170 (607)
                      ..+|.||+|++.||..|+.         +|+|++||||+++||+..+..+++.|++.   |.+|++|+|++.
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~  342 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD  342 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence            3589999999999999999         99999999999999999999999999764   779999999864

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.49  E-value=6.1e-08  Score=85.36  Aligned_cols=53  Identities=21%  Similarity=0.148  Sum_probs=40.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLA   67 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~   67 (607)
                      +||||||||||++++.           +|++.++|.++...     .+.++|++|+  ++. -|++|||.+.
T Consensus        21 ~GpSGsGKSTLl~~l~-----------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~~Ni~~~   78 (107)
T cd00820          21 TGDSGIGKTELALELI-----------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLRLNIFLI   78 (107)
T ss_pred             EcCCCCCHHHHHHHhh-----------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHHhhceee
Confidence            5999999999999986           37899999876432     2346777777  444 3899999873

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=98.49  E-value=6e-05  Score=76.46  Aligned_cols=219  Identities=14%  Similarity=0.065  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhcC---C-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007344          288 WLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWR---M-GRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKER  363 (607)
Q Consensus       288 ~~L~~R~~~~~~Rd~~~~~~r~~~~i~~ali~G~~f~~---~-~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er  363 (607)
                      +.+.||+++..+|.|..+..-.+..++.|+.. ..+..   . ..+.++.+.-.+...+  +...+..+. +.       
T Consensus         2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~p~l-~~-------   70 (240)
T TIGR03518         2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPW--VFLFLIPAI-TM-------   70 (240)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHH--HHHHHHHHH-HH-------
Confidence            46789999999999999887777766666442 22211   0 1111222222221111  111111111 22       


Q ss_pred             HHHHHHhhCCCC--------ChHHHHHHHHHHHHHHHHHHHH---hhhhhhhcccccc---ccHHHHHHHHHHHHHHHHH
Q 007344          364 AIVDRERAKGSY--------ALGPYLLSKLIAEIPVGAAFPL---MFGAVLYPMARLH---PTLSRFGKFCGIVTVESFA  429 (607)
Q Consensus       364 ~v~~rE~~~g~Y--------~~~~y~la~~l~~lp~~~~~~~---if~~i~Y~~~gl~---~~~~~F~~f~~~~~l~~~~  429 (607)
                      ..+.+||++|..        +...++++|.++-+-+.++..+   ++.....+ .|.+   .+...++..++..++...+
T Consensus        71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~  149 (240)
T TIGR03518        71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQ-LGNPVGNLDIGSTFGSYIGLLLLGSV  149 (240)
T ss_pred             HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccccccHHHHHHHHHHHHHHHHH
Confidence            334455666653        5688999999987655333221   12222221 1222   2344444444444566667


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCc--cchhhhhhcccHHHHHHHHHHHHhhCCCccccCCCC
Q 007344          430 ASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNT--PIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSF  507 (607)
Q Consensus       430 ~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~~~~  507 (607)
                      ..++|.++|+++++...|..++..+...  ++.|+.. ..++  |.+.+|+.|+||.+|-.+.. .    | .++     
T Consensus       150 ~~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~-~----g-~i~-----  215 (240)
T TIGR03518       150 YTAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDG-LASLLWGGSAYTISELGLSYHYESIS-R----G-VID-----  215 (240)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-c----C-ccc-----
Confidence            8899999999999988886655433222  2222211 2333  78899999999987754433 1    1 111     


Q ss_pred             CcccHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 007344          508 DIQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKK  551 (607)
Q Consensus       508 ~~~~G~~~L~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~l~~~  551 (607)
                                         ++++.....+++++..++...+++|
T Consensus       216 -------------------~~~~v~~~~~~~~~l~l~~~~~~~r  240 (240)
T TIGR03518       216 -------------------SRDVIYFLSITVLFLALTKLQLKSR  240 (240)
T ss_pred             -------------------HhHHHHHHHHHHHHHHHHHHHHhcC
Confidence                               4667777788888888888777654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.48  E-value=3.3e-07  Score=109.78  Aligned_cols=79  Identities=29%  Similarity=0.394  Sum_probs=70.6

Q ss_pred             CcCCCCCHHHHHHHHHHHHHh------hC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhh
Q 007344          105 AKVRGISGGEKKRLSLACELI------AS--PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK  176 (607)
Q Consensus       105 ~~~~~LSGGerqRvsIa~aL~------~~--p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~  176 (607)
                      +.+..|||||+-.++||.+|+      .+  -++|||||||..||+.+...++++|..+...|.+|++|||++  ++...
T Consensus       811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~  888 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER  888 (908)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence            467899999999988888776      35  699999999999999999999999999998899999999985  67788


Q ss_pred             hcceeeecC
Q 007344          177 FDDIVLLTE  185 (607)
Q Consensus       177 ~D~v~lL~~  185 (607)
                      +|.++.++.
T Consensus       889 ~~~~i~V~k  897 (908)
T COG0419         889 ADVRIRVKK  897 (908)
T ss_pred             CCeEEEEEe
Confidence            999999863

>PRK14079 recF recombination protein F; Provisional

Probab=98.48  E-value=2.9e-07  Score=98.39  Aligned_cols=75  Identities=20%  Similarity=0.260  Sum_probs=62.7

Q ss_pred             CCCCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhc
Q 007344          108 RGISGGEKKRLSLACELI---------ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD  178 (607)
Q Consensus       108 ~~LSGGerqRvsIa~aL~---------~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D  178 (607)
                      .-+|+||+|++.+|..|+         .+|++++||||+++||...+..+++.|.+.   ..++|.+++.|     ..+|
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~  333 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAA  333 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCc
Confidence            358999999999999999         899999999999999999999999888653   24555555544     4589


Q ss_pred             ceeeecCCeeee
Q 007344          179 DIVLLTEGKLVY  190 (607)
Q Consensus       179 ~v~lL~~G~iv~  190 (607)
                      +++.+.+|++.-
T Consensus       334 ~~~~~~~~~~~~  345 (349)
T PRK14079        334 LTLRIEAGVFTP  345 (349)
T ss_pred             eEEEEeccEecC
Confidence            999999998753

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.45  E-value=3.7e-07  Score=99.17  Aligned_cols=137  Identities=20%  Similarity=0.182  Sum_probs=93.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +|+||+|||||+++|+|..+++     .|.|.+.|+..                   .+|.|.+.....           
T Consensus       162 ~G~sG~GKTtLl~~Ia~~~~~~-----~gvI~~iGerg-------------------~ev~e~~~~~l~-----------  206 (432)
T PRK06793        162 FAGSGVGKSTLLGMIAKNAKAD-----INVISLVGERG-------------------REVKDFIRKELG-----------  206 (432)
T ss_pred             ECCCCCChHHHHHHHhccCCCC-----eEEEEeCCCCc-------------------ccHHHHHHHHhh-----------
Confidence            4899999999999999988765     56665555321                   366665543211           


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHh-------hCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI-------ASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~-------~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                                .-|+.+   +.+ -.....-|.|+|+|+..+...+       .++-++++|+||++.|+.  .++-..+.
T Consensus       207 ----------~~gl~~---tvv-v~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~  270 (432)
T PRK06793        207 ----------EEGMRK---SVV-VVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVK  270 (432)
T ss_pred             ----------hcccce---eEE-EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhc
Confidence                      112211   111 0124568999999999998887       789999999999999996  55555666


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP  193 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~  193 (607)
                      +....|.+..+.+|.+  .+   ++|.-...+|.+...+.
T Consensus       271 e~p~~G~~~~~~s~l~--~L---~ERag~~~~GSiT~~~t  305 (432)
T PRK06793        271 ELPIGGKTLLMESYMK--KL---LERSGKTQKGSITGIYT  305 (432)
T ss_pred             CCCCCCeeeeeeccch--hH---HHHhccCCCcceEEEEE
Confidence            6665588888888853  23   44544557888766553

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=98.41  E-value=0.00011  Score=75.24  Aligned_cols=166  Identities=15%  Similarity=0.190  Sum_probs=93.2

Q ss_pred             HHHHHhhCCC--------CChHHHHHHHHHHHHHHHHH--HHHhhh--h-hhhc-cccccccHHHHHHHHHHHHHHHH--
Q 007344          365 IVDRERAKGS--------YALGPYLLSKLIAEIPVGAA--FPLMFG--A-VLYP-MARLHPTLSRFGKFCGIVTVESF--  428 (607)
Q Consensus       365 v~~rE~~~g~--------Y~~~~y~la~~l~~lp~~~~--~~~if~--~-i~Y~-~~gl~~~~~~F~~f~~~~~l~~~--  428 (607)
                      .+-+|+++|.        ++...++++|.++.+...++  ...+.+  + ..++ ..|.+.+...+........+..+  
T Consensus        89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (277)
T PF12679_consen   89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV  168 (277)
T ss_pred             HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence            4555666553        67889999999998876432  111111  1 1111 23444455554443332222222  


Q ss_pred             -HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcccc-CCCCc--cchh--hhhhcccHHHHHHHHHHHHhhCCCccc
Q 007344          429 -AASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYV-NADNT--PIIF--RWIPRVSLIRWAFQGLCINEFSGLQFD  502 (607)
Q Consensus       429 -~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i-~~~~i--p~~~--~Wl~yiSp~~y~~eal~~nef~~~~~~  502 (607)
                       +..+++.++|++++|...|+.++..+............ ..++.  ..+.  ..+.+++|..+ ++.+......+....
T Consensus       169 ~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~  247 (277)
T PF12679_consen  169 LVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-FNLLIGSILGGGFVW  247 (277)
T ss_pred             HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-HHHHHHHhhccccch
Confidence             56899999999999999888887766554433333222 11111  1111  23456666542 222222222211000


Q ss_pred             cCCCCCcccHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007344          503 HQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKK  552 (607)
Q Consensus       503 ~~~~~~~~~G~~~L~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~l~~~~  552 (607)
                                           ...|.++++++++.+++.++++...++++
T Consensus       248 ---------------------~~~~~~~~~~~~~~~v~l~la~~~F~rrD  276 (277)
T PF12679_consen  248 ---------------------LSTWPSLLILLAYTLVFLALAYYRFQRRD  276 (277)
T ss_pred             ---------------------hHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                                 45678899999999999999997776653

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.39  E-value=5.2e-06  Score=74.37  Aligned_cols=60  Identities=32%  Similarity=0.262  Sum_probs=46.0

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH------HHHHHHhcCCeEEEEec
Q 007344          108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME------ALRQLAQDGHTVICSIH  167 (607)
Q Consensus       108 ~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~------~L~~la~~g~tvi~~~H  167 (607)
                      ....+++..+..+.++--.+|+++++||+..-.+.........      ........+..+|+++|
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  124 (148)
T smart00382       59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN  124 (148)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence            3567777888777777777789999999999999998887765      23333355678888888

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.26  E-value=1.4e-06  Score=107.84  Aligned_cols=61  Identities=23%  Similarity=0.337  Sum_probs=53.9

Q ss_pred             CcCCCCCHHHHHHHH----HHHH--------HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 007344          105 AKVRGISGGEKKRLS----LACE--------LIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ  168 (607)
Q Consensus       105 ~~~~~LSGGerqRvs----Ia~a--------L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~  168 (607)
                      ...++||||||||+.    +|++        +..+|++++|||||+|||+.+...+++++.++   |.++|+++|.
T Consensus      1243 ~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680      1243 HRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred             ccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence            346899999999996    5644        45799999999999999999999999999988   7889999986

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.19  E-value=0.00043  Score=71.05  Aligned_cols=237  Identities=11%  Similarity=0.096  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHHHHHHhcChhHHHH-----HHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHH-HHHHHH
Q 007344          283 WWRQFWLLLRRAWMQASRDGPTNKV-----RARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMA-ALTKTV  356 (607)
Q Consensus       283 ~~~Q~~~L~~R~~~~~~Rd~~~~~~-----r~~~~i~~ali~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~-~~~~~~  356 (607)
                      .++.++.|.+|.++..+|+...-..     -+++.+++++++|.++-+-+.+ --..--.|.+...    .+. +.....
T Consensus        16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~-~~~~l~~G~~~w~----f~~~~i~~~~   90 (263)
T COG1682          16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLN-FLAYLLAGLILWF----FFSEAISEGA   90 (263)
T ss_pred             HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHH----HHHHHHHhHH
Confidence            3677888999999998887643222     2334445555555555332111 0111222322111    111 223344


Q ss_pred             HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 007344          357 GVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLT  436 (607)
Q Consensus       357 ~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~  436 (607)
                      ..+.+...++.|-    ..++..+.+++++.++--..+..++....+-+.-+ .++ ..+..+...+.+..+.+.++|++
T Consensus        91 ~s~~~n~~li~k~----~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~-~~s-~~~l~~~~~l~~l~l~~~g~~l~  164 (263)
T COG1682          91 GSVVANAALIKKI----NFPPLILPVARTLSRLFNFLIHLIIILIFLIILGV-EPS-WHWLLLLPALLLLILFSVGLGLI  164 (263)
T ss_pred             HHhhhhHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555554432    24889999999999887655555444433333333 333 34344444445555667788888


Q ss_pred             HHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhcccHHHHHHHHHHHHhhCCCccccCCCCCcccHHHHH
Q 007344          437 VGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQAL  516 (607)
Q Consensus       437 i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~~~~~~~~G~~~L  516 (607)
                      +|+++.-..--..+.+.++-+++..+|.+-+.+++|..++|+.++||+.+-.|.+=..-+.+...               
T Consensus       165 ~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~~~---------------  229 (263)
T COG1682         165 LASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGDVP---------------  229 (263)
T ss_pred             HHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCCcc---------------
Confidence            88887776666666677888899999999999999999999999999999999886554433211               


Q ss_pred             hhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 007344          517 ERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKKPK  554 (607)
Q Consensus       517 ~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~l~~~~~~  554 (607)
                               -+.+.....++.++..+++++..++.+++
T Consensus       230 ---------~~~~~~~~~~~~li~l~vg~~~~~~~~~~  258 (263)
T COG1682         230 ---------DLHLLVYILLLTLILLFVGLLLFRKFRKR  258 (263)
T ss_pred             ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                     12334444555566666666666655444

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.19  E-value=6.7e-06  Score=87.77  Aligned_cols=56  Identities=25%  Similarity=0.337  Sum_probs=43.0

Q ss_pred             HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee
Q 007344          119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL  183 (607)
Q Consensus       119 sIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL  183 (607)
                      .+..+|-.+|+++++||+.   |+.++...++    .+..|++|+.|+|..+  .....+|++-|
T Consensus       187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~  242 (343)
T TIGR01420       187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV  242 (343)
T ss_pred             HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence            3566788899999999997   8888765444    4577999999999854  34567887665

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=98.15  E-value=4.3e-07  Score=94.61  Aligned_cols=155  Identities=17%  Similarity=0.246  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc---ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007344          361 KERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMAR---LHPTLSRFGKFCGIVTVESFAASAMGLTV  437 (607)
Q Consensus       361 ~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~g---l~~~~~~F~~f~~~~~l~~~~~~~~g~~i  437 (607)
                      +|+.+..|-+..| .+...|+++|++..+.+.++..+++..+   +.|   ++..  .++..++++++..++..+++.++
T Consensus       186 k~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~i  259 (344)
T PF12698_consen  186 KESGTRERLLSSG-VSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISFGFLI  259 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhhhHhhhccc-CCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555666 5889999999999999888877666554   334   4443  45555567778888899999999


Q ss_pred             HHccCCHHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhcccHHHHHHHHHHHHhhCCCccccCCCCCcccHHHHHh
Q 007344          438 GAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQALE  517 (607)
Q Consensus       438 ~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~~~~~~~~G~~~L~  517 (607)
                      +.++++...|..+++++..+.+.++|.+.+.+++|.+++|+.++.|..|..+++..--+.+                   
T Consensus       260 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~~~~~-------------------  320 (344)
T PF12698_consen  260 SSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNIIYGD-------------------  320 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHHHHhc-------------------
Confidence            9999999999988888887677777777889999999999999999999888875332110                   


Q ss_pred             hcCCCCCCchhHHHHHHHHHHHHHHHHH
Q 007344          518 RLSFGGSRISDTVMAQSRILLFWYCTTY  545 (607)
Q Consensus       518 ~~g~~~~~~~~~~~il~~~~~~~~~l~~  545 (607)
                           ...+|.++++++++.+++.++++
T Consensus       321 -----~~~~~~~~~~l~~~~~v~~~l~~  343 (344)
T PF12698_consen  321 -----WSEIWISLIILLLFAVVYLLLAI  343 (344)
T ss_dssp             ----------------------------
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHh
Confidence                 01256677777777777776654

>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.13  E-value=3.3e-06  Score=74.19  Aligned_cols=56  Identities=18%  Similarity=0.062  Sum_probs=49.4

Q ss_pred             CcccHHHHHh-hcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCC
Q 007344          508 DIQTGEQALE-RLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKKPKYQQLELPNP  563 (607)
Q Consensus       508 ~~~~G~~~L~-~~g~~~~~~~~~~~il~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~  563 (607)
                      .+++|+++|+ +|||..+|+|||++|+++|+++|+++.++++++.+....+.+.+.=
T Consensus        29 ~~V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~~~~l~f   85 (103)
T PF06422_consen   29 TYVSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEKSGGEVLVF   85 (103)
T ss_pred             cEEeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEE
Confidence            4789999997 8999999999999999999999999999999998887666555544

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.13  E-value=8.1e-06  Score=90.08  Aligned_cols=133  Identities=17%  Similarity=0.203  Sum_probs=79.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||+||||++..|++.+...     .|.            .+++++.+|.   ...++.|+|.+.++....   +...
T Consensus       262 vGpnGvGKTTTiaKLA~~~~~~-----~G~------------~kV~LI~~Dt---~RigA~EQLr~~AeilGV---pv~~  318 (484)
T PRK06995        262 MGPTGVGKTTTTAKLAARCVMR-----HGA------------SKVALLTTDS---YRIGGHEQLRIYGKILGV---PVHA  318 (484)
T ss_pred             ECCCCccHHHHHHHHHHHHHHh-----cCC------------CeEEEEeCCc---cchhHHHHHHHHHHHhCC---Ceec
Confidence            6999999999999999976433     232            2578888875   346899999988775421   1111


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHH-HHHHHHHHhhCC-----CeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK-RLSLACELIASP-----SVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq-RvsIa~aL~~~p-----~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      .....+...+..+|.+..+.     .+.+...+++. .+.-..+++.++     .+|+||.++.+      ..+.+.++.
T Consensus       319 ~~~~~Dl~~aL~~L~d~d~V-----LIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~------~~l~~i~~~  387 (484)
T PRK06995        319 VKDAADLRLALSELRNKHIV-----LIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG------DTLNEVVQA  387 (484)
T ss_pred             cCCchhHHHHHHhccCCCeE-----EeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH------HHHHHHHHH
Confidence            11223334445566544322     23333333332 234445555555     68999999888      334455555


Q ss_pred             HHhcCCeEEEEec
Q 007344          155 LAQDGHTVICSIH  167 (607)
Q Consensus       155 la~~g~tvi~~~H  167 (607)
                      ....+.+-++.|+
T Consensus       388 f~~~~~~g~IlTK  400 (484)
T PRK06995        388 YRGPGLAGCILTK  400 (484)
T ss_pred             hccCCCCEEEEeC
Confidence            5555665455554

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.10  E-value=5.6e-06  Score=70.91  Aligned_cols=50  Identities=36%  Similarity=0.516  Sum_probs=38.8

Q ss_pred             CcCCCCCHHHH-HHHHHHHHHh------h------CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344          105 AKVRGISGGEK-KRLSLACELI------A------SPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus       105 ~~~~~LSGGer-qRvsIa~aL~------~------~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      +..+++||||| ..+.++.+++      .      .|++++||||+++||+.....++++|++
T Consensus        28 ~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   28 RSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             ccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            35678999999 4455544433      2      3789999999999999999999999874

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.09  E-value=1.2e-06  Score=97.84  Aligned_cols=69  Identities=17%  Similarity=0.224  Sum_probs=54.3

Q ss_pred             cCCCCCHHHHHHHHHH--HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhH--------HHh
Q 007344          106 KVRGISGGEKKRLSLA--CELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS--------VYF  175 (607)
Q Consensus       106 ~~~~LSGGerqRvsIa--~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~--------i~~  175 (607)
                      ..+.+|+|++|||.|+  .++..+|+..          ...+..+.++++.+++.|.|+|+++|++...        ...
T Consensus       112 i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~  181 (484)
T TIGR02655       112 INYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEF  181 (484)
T ss_pred             HHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeE
Confidence            3457999999999999  6666665443          4677889999999998999999999986421        255


Q ss_pred             hhcceeeec
Q 007344          176 KFDDIVLLT  184 (607)
Q Consensus       176 ~~D~v~lL~  184 (607)
                      ++|.|+.|+
T Consensus       182 laDgVI~L~  190 (484)
T TIGR02655       182 VSDNVVILR  190 (484)
T ss_pred             eeeeEEEEE
Confidence            789999986

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.98  E-value=1.2e-05  Score=78.31  Aligned_cols=66  Identities=23%  Similarity=0.284  Sum_probs=48.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC--ccceEEEEccCC--CCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--KAYKFAYVRQED--LFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~--~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||+++|+|.++++     .|.|.+.+.....  ....++++.|.+  ...+..|+.+.+..+.+.+
T Consensus        31 ~G~tGSGKTTll~aL~~~i~~~-----~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~  100 (186)
T cd01130          31 SGGTGSGKTTLLNALLAFIPPD-----ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMR  100 (186)
T ss_pred             ECCCCCCHHHHHHHHHhhcCCC-----CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccC
Confidence            5999999999999999999876     6888887753222  123456655543  4567789999988877654

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional

Probab=97.98  E-value=0.0043  Score=63.87  Aligned_cols=104  Identities=9%  Similarity=0.042  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhcccHHHHHHHHHHHHhhCCCccccCC
Q 007344          426 ESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQH  505 (607)
Q Consensus       426 ~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~~~~~  505 (607)
                      ..+.+.++|+++|+++.-..-...+.++++.+++..+|.+-+.+.+|.+++|+.+.||+.+..|+.=..-+.+..     
T Consensus       158 ~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~~~~~-----  232 (264)
T PRK15176        158 AWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMFEGYH-----  232 (264)
T ss_pred             HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHhcCcC-----
Confidence            344456666666665544444444556777888899999989999999999999999999999988655553311     


Q ss_pred             CCCcccHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCc
Q 007344          506 SFDIQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKKP  553 (607)
Q Consensus       506 ~~~~~~G~~~L~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~l~~~~~  553 (607)
                                         .-|.+.....++.++..+++++..++.+.
T Consensus       233 -------------------~~~~~~~~~~~~~~~~l~~G~~~~~~~~~  261 (264)
T PRK15176        233 -------------------SLYLEPFYPLAFSATLFLAGLIFHLICDT  261 (264)
T ss_pred             -------------------ccccChHHHHHHHHHHHHHHHHHHHHHHh
Confidence                               00122355556677777777777776654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.96  E-value=6.7e-06  Score=80.55  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=61.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHH-ccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAE-LQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-~~~~~~~~~~   79 (607)
                      .||||||||||.++|++.+.       .|.              +.++++++.+ ..++..+....... ...+....  
T Consensus         5 ~G~~GsGKSTl~~~l~~~l~-------~~~--------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~--   60 (198)
T cd02023           5 AGGSGSGKTTVAEEIIEQLG-------NPK--------------VVIISQDSYY-KDLSHEELEERKNNNYDHPDAFD--   60 (198)
T ss_pred             ECCCCCCHHHHHHHHHHHhC-------CCC--------------eEEEEecccc-cccccccHHHhccCCCCCCCccc--
Confidence            49999999999999999762       122              2344444322 22333333221111 01111111  


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDA  142 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~  142 (607)
                        .+...+.++.+...+..     +.+....|.|++++..+   .+.+++++++|+|..+.++
T Consensus        61 --~~~~~~~l~~l~~~~~~-----~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~  113 (198)
T cd02023          61 --FDLLISHLQDLKNGKSV-----EIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK  113 (198)
T ss_pred             --HHHHHHHHHHHHCCCCE-----eccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence              12334556665543221     22345677887776555   4678999999999999986

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=97.82  E-value=1.2e-05  Score=80.48  Aligned_cols=40  Identities=18%  Similarity=0.120  Sum_probs=26.8

Q ss_pred             HHHHHHHHHH-HHhcCCeEEEEecCCh-------hHHHhhhcceeeec
Q 007344          145 AEKVMEALRQ-LAQDGHTVICSIHQPR-------GSVYFKFDDIVLLT  184 (607)
Q Consensus       145 ~~~i~~~L~~-la~~g~tvi~~~H~p~-------~~i~~~~D~v~lL~  184 (607)
                      ..+++..|++ +++.|.|+++++|...       ..+..++|.|+.|+
T Consensus       141 ~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~  188 (229)
T TIGR03881       141 ARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR  188 (229)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence            3455554555 4567999999999532       12455788888886

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=97.77  E-value=0.0003  Score=68.16  Aligned_cols=68  Identities=18%  Similarity=0.157  Sum_probs=45.6

Q ss_pred             HHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHH--HHHHHhh-CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS--LACELIA-SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        84 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs--Ia~aL~~-~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                      .+.+.++..++.-   -.+++ +...+|+||++++.  +...+-. +++++    |+|++|.....++.+.|.++.+++
T Consensus       126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~~  196 (196)
T PRK00454        126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAEA  196 (196)
T ss_pred             HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcCC
Confidence            3445566555421   12233 56678999999977  4444433 34443    999999999999999999887653

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.76  E-value=0.00016  Score=79.87  Aligned_cols=99  Identities=12%  Similarity=0.154  Sum_probs=66.5

Q ss_pred             hCCCeEEEeCCCCCCCHH-HHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhccee-eecCCeeeeeCCCCCc-----h
Q 007344          126 ASPSVIYADEPTTGLDAF-QAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIV-LLTEGKLVYAGPARDE-----P  198 (607)
Q Consensus       126 ~~p~illLDEPtsGLD~~-~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~-lL~~G~iv~~G~~~~~-----~  198 (607)
                      .++++|++|||...+|.. +..++..++..+.+.|+.+|++++++..++..+.|++. -+..|-++...+++.+     +
T Consensus       193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL  272 (440)
T PRK14088        193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA  272 (440)
T ss_pred             hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence            379999999999988765 45678899999888888888877444456656656655 4677888888888763     2


Q ss_pred             hhHhhhcCCCCCCCCCHHHHHHHhhccC
Q 007344          199 LAYFSRFGYTCPDHVNPAEFLADLISVD  226 (607)
Q Consensus       199 ~~~f~~~g~~~p~~~~~ad~~~~~~~~~  226 (607)
                      ....+..+...|  .+..+|+.+-...+
T Consensus       273 ~~~~~~~~~~l~--~ev~~~Ia~~~~~~  298 (440)
T PRK14088        273 RKMLEIEHGELP--EEVLNFVAENVDDN  298 (440)
T ss_pred             HHHHHhcCCCCC--HHHHHHHHhccccC
Confidence            222233344443  34566766654433

>PLN03210 Resistant to P

Probab=97.73  E-value=7.6e-05  Score=91.86  Aligned_cols=32  Identities=28%  Similarity=0.396  Sum_probs=26.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCe
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK   36 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~   36 (607)
                      +|++|+|||||++++++.....    ..|.+.+++.
T Consensus       213 ~G~gGiGKTTLA~~l~~~l~~~----F~g~vfv~~~  244 (1153)
T PLN03210        213 WGSSGIGKTTIARALFSRLSRQ----FQSSVFIDRA  244 (1153)
T ss_pred             EcCCCCchHHHHHHHHHHHhhc----CCeEEEeecc
Confidence            5999999999999998876543    4788888753

syringae 6; Provisional

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=97.66  E-value=0.00056  Score=81.18  Aligned_cols=48  Identities=27%  Similarity=0.272  Sum_probs=43.7

Q ss_pred             HhhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCeEEEEecCChh
Q 007344          124 LIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGHTVICSIHQPRG  171 (607)
Q Consensus       124 L~~~p~illLDEPtsGLD-~~~~~~i~~~L~~la~~g~tvi~~~H~p~~  171 (607)
                      +..+|.++++|||..+|| +..+..+.+.++.+++.|..++++||+|..
T Consensus       639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d  687 (800)
T PRK13898        639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED  687 (800)
T ss_pred             hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            456899999999999999 888999999999999999999999999854

>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]

Probab=97.66  E-value=0.0059  Score=62.79  Aligned_cols=252  Identities=11%  Similarity=0.098  Sum_probs=147.8

Q ss_pred             HHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhc-CCC--C-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007344          285 RQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFW-RMG--R-SQTSIQDRMGLLQVAAINTAMAALTKTVGVFP  360 (607)
Q Consensus       285 ~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~ali~G~~f~-~~~--~-~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~  360 (607)
                      .+++.+.+++++...|+|..........+..++.....+- ...  . .......-.....+......+...   +..+ 
T Consensus         2 ~~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-   77 (278)
T COG1277           2 SNILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLLFLSSVSLVFSFFLPL---LAIL-   77 (278)
T ss_pred             chhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhhhhhhHHHHHHHHHHH---HHHH-
Confidence            3577889999999999998877766555666666655552 111  1 111110101111111111122221   1112 


Q ss_pred             HHHHHHHHHhhCCC--------CChHHHHHHHHHHHHHHHHHHHHhhh---hhhhcccccccc---HHHHHHHHHHHHHH
Q 007344          361 KERAIVDRERAKGS--------YALGPYLLSKLIAEIPVGAAFPLMFG---AVLYPMARLHPT---LSRFGKFCGIVTVE  426 (607)
Q Consensus       361 ~er~v~~rE~~~g~--------Y~~~~y~la~~l~~lp~~~~~~~if~---~i~Y~~~gl~~~---~~~F~~f~~~~~l~  426 (607)
                      .--.++-+|+.+|.        .++.--+++|.++-+-..++..++..   ...+...|..++   ...+..+....++.
T Consensus        78 l~~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~  157 (278)
T COG1277          78 LGADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLY  157 (278)
T ss_pred             HccchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH
Confidence            22456677777775        55667788898887665544443332   223334454443   33556666777777


Q ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccccCC-----CCccchhhhhhcccHHHHHHHHHHHHhhCCCcc
Q 007344          427 SFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNA-----DNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQF  501 (607)
Q Consensus       427 ~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~-----~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~  501 (607)
                      .++..+++.+++...++...+..++..+...+.+..+.....     ....+....+.+.+|..+..+......... .+
T Consensus       158 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~  236 (278)
T COG1277         158 GLVLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYLLAELAFTILLQS-GF  236 (278)
T ss_pred             HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhccCHHHHHHHHhhhhcccc-cc
Confidence            888889999999999999888888777766655544433221     111114567778888888877765433321 01


Q ss_pred             ccCCCCCcccHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007344          502 DHQHSFDIQTGEQALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKK  552 (607)
Q Consensus       502 ~~~~~~~~~~G~~~L~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~l~~~~  552 (607)
                      ..           ......-.....|.+..++.++.+.+..++++..+++.
T Consensus       237 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~d  276 (278)
T COG1277         237 SD-----------SILTLNESLLLAWFNILILIIYILIFLSIAYLIFKRRD  276 (278)
T ss_pred             cc-----------ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            00           00111112334688899999999999999999887765

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=97.65  E-value=4.2e-05  Score=71.14  Aligned_cols=64  Identities=14%  Similarity=0.087  Sum_probs=41.9

Q ss_pred             HHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHh-----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI-----ASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        84 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~-----~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      .+.+.+...+..   -..+.+ +...++++++++.....+..     ..++++    |+|++|.....++++.|.++
T Consensus       101 ~~~~~l~~~~~~---vi~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         101 EMLDWLEELGIP---FLVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             HHHHHHHHcCCC---EEEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence            344556655531   012333 45668999988876665532     345555    99999999999999988764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=97.64  E-value=1.7e-05  Score=75.55  Aligned_cols=57  Identities=23%  Similarity=0.181  Sum_probs=36.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---c-ceEEEEccCCCCCCCCCHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---A-YKFAYVRQEDLFFSQLTVRETLSL   66 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~-~~i~yv~Q~~~l~~~lTV~E~l~~   66 (607)
                      ||+||||||||+++|++++         |.+.++|......   . ...|+.+|+....+.+++.++..+
T Consensus         1 ~G~sGsGKSTla~~la~~l---------~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   61 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQL---------HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAF   61 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHh---------CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHH
Confidence            7999999999999999975         4566776433211   1 124677776544444444444444

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.63  E-value=9.2e-05  Score=66.90  Aligned_cols=55  Identities=22%  Similarity=0.280  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-----cCCeEEEEecCCh
Q 007344          115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-----DGHTVICSIHQPR  170 (607)
Q Consensus       115 rqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-----~g~tvi~~~H~p~  170 (607)
                      ++..........++.++++||.-.. +......+.+.+.....     .+.++|++++.+.
T Consensus        72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            3444445556678999999998775 56667778888887753     4678888888643

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=97.63  E-value=6.1e-05  Score=89.42  Aligned_cols=68  Identities=18%  Similarity=0.102  Sum_probs=46.7

Q ss_pred             CCCCHHHHHHHHHHHHH--hhCCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHhc-CCeEEEEecCChhHHHhhhcc
Q 007344          108 RGISGGEKKRLSLACEL--IASPSVIYADEP---TTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDD  179 (607)
Q Consensus       108 ~~LSGGerqRvsIa~aL--~~~p~illLDEP---tsGLD~~~~~~i~~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~  179 (607)
                      +|.|-=+.....++..|  +++++++++|||   |+.+|..+  ....+++.+.+. |.+++++||..  ++..++++
T Consensus       665 ~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~  738 (854)
T PRK05399        665 SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK  738 (854)
T ss_pred             cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence            35555544555555544  448999999999   88888444  345566666655 58999999983  56677665

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.62  E-value=9.5e-05  Score=84.79  Aligned_cols=108  Identities=22%  Similarity=0.276  Sum_probs=64.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCC---ccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRL---HLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~---~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||+|||||+++|.+..++...-   .-.+-|.+||.......+.               + ++-.+.       .. 
T Consensus       181 ~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~---------------i-~~~llg-------~~-  236 (615)
T TIGR02903       181 YGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE---------------V-TNPLLG-------SV-  236 (615)
T ss_pred             ECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH---------------H-hHHhcC-------Cc-
Confidence            4999999999999999876432100   0123355665433110000               0 011111       01 


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                      .+...+.+.+.++..|+.+..+     ..+..+|||                +||+|| +..||+..+..+.+.|++
T Consensus       237 ~~~~~~~a~~~l~~~gl~~~~~-----g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~  291 (615)
T TIGR02903       237 HDPIYQGARRDLAETGVPEPKT-----GLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED  291 (615)
T ss_pred             cHHHHHHHHHHHHHcCCCchhc-----CchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence            1112223455677788854333     245678888                999999 899999999998888865

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR00152 dephospho-CoA kinase

Probab=97.57  E-value=5.9e-05  Score=73.38  Aligned_cols=72  Identities=15%  Similarity=0.121  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChh-HHHhhhcceeeecCC
Q 007344          113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG-SVYFKFDDIVLLTEG  186 (607)
Q Consensus       113 GerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~-~i~~~~D~v~lL~~G  186 (607)
                      |+-.|..||..+..+|+.+..+|  +.+||....++.+.+++..++|.+|++.+|.... .....||.+++++.+
T Consensus        61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~  133 (188)
T TIGR00152        61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS  133 (188)
T ss_pred             CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence            78899999999999999988887  8999999999999998887667899999997632 256678998887644

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=97.47  E-value=0.00095  Score=73.38  Aligned_cols=62  Identities=19%  Similarity=0.205  Sum_probs=50.9

Q ss_pred             EEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-------eEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          132 YADEP--TTGLDAFQAEKVMEALRQLAQDGH-------TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       132 lLDEP--tsGLD~~~~~~i~~~L~~la~~g~-------tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.||  +.|+|+.....+-+++.+....+.       ||++..|+..   ...+|++..+.+|+++.....++
T Consensus       275 ~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~  345 (440)
T TIGR01026       275 AAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQ  345 (440)
T ss_pred             hcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhh
Confidence            35675  459999999999999999886666       7888888864   34689999999999999887655

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK06893 DNA replication initiation factor; Validated

Probab=97.45  E-value=0.00057  Score=68.78  Aligned_cols=97  Identities=14%  Similarity=0.206  Sum_probs=56.1

Q ss_pred             hCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCeEEEEec-CChhHHHhhhcc-eeeecCCeeeeeCCCCCc-hhhH
Q 007344          126 ASPSVIYADEPTTGL-DAFQAEKVMEALRQLAQDGHTVICSIH-QPRGSVYFKFDD-IVLLTEGKLVYAGPARDE-PLAY  201 (607)
Q Consensus       126 ~~p~illLDEPtsGL-D~~~~~~i~~~L~~la~~g~tvi~~~H-~p~~~i~~~~D~-v~lL~~G~iv~~G~~~~~-~~~~  201 (607)
                      .++++|++||..... |......+.+++.+..++|++++++++ .+..++....++ .--+..|.++...+++++ ....
T Consensus        90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i  169 (229)
T PRK06893         90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV  169 (229)
T ss_pred             ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence            368999999998864 666677888999888777877655544 433222111011 111445777777777663 2223


Q ss_pred             hh----hcCCCCCCCCCHHHHHHHhhc
Q 007344          202 FS----RFGYTCPDHVNPAEFLADLIS  224 (607)
Q Consensus       202 f~----~~g~~~p~~~~~ad~~~~~~~  224 (607)
                      +.    ..|...+  ....+|+..-..
T Consensus       170 L~~~a~~~~l~l~--~~v~~~L~~~~~  194 (229)
T PRK06893        170 LQRNAYQRGIELS--DEVANFLLKRLD  194 (229)
T ss_pred             HHHHHHHcCCCCC--HHHHHHHHHhcc
Confidence            32    2343333  345566665543

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=97.44  E-value=0.0081  Score=59.90  Aligned_cols=157  Identities=18%  Similarity=0.185  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007344          287 FWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTS-IQDRMGLLQVAAINTAMAALTKTVGVFPKERAI  365 (607)
Q Consensus       287 ~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~ali~G~~f~~~~~~~~~-~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v  365 (607)
                      ++.++||.++.-+|++.....-+...+..-.++...   ++.+.+. .+.-.|+++.+..+.+..++         +| .
T Consensus         1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~~a---l~~~~~~l~~~~~gllWi~~lfa~~l~~---------~r-~   67 (215)
T PF03379_consen    1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFSFA---LGPDPDLLARVAPGLLWIALLFASLLGL---------NR-S   67 (215)
T ss_pred             CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHhh---cCCchhHHHHHhHHHHHHHHHHHHHHHh---------hH-h
Confidence            468899999999999887666666555554455444   3443332 23335666655544443332         12 3


Q ss_pred             HHHHhhCCC--------CChHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007344          366 VDRERAKGS--------YALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTV  437 (607)
Q Consensus       366 ~~rE~~~g~--------Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~f~~~~~l~~~~~~~~g~~i  437 (607)
                      |.+|+++|.        .++.+++++|.++..-+..+..++...+...+-|++.  .....+.+++.+.+.+-..+|-+.
T Consensus        68 f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igtl~  145 (215)
T PF03379_consen   68 FAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGTLL  145 (215)
T ss_pred             HHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHHHH
Confidence            566666665        2467899999999876655544444444444446553  345556666677777777777777


Q ss_pred             HHccCCHHHHHHHHHHHHHHH
Q 007344          438 GAMVPTTEAAMAVGPSLMTVF  458 (607)
Q Consensus       438 ~a~~~s~~~A~~~~~~~~~~~  458 (607)
                      ++++-+......+.+++..|.
T Consensus       146 aal~~~~r~~~~Ll~lL~lPl  166 (215)
T PF03379_consen  146 AALAAGARGREILLPLLLLPL  166 (215)
T ss_pred             HHHHHhccccCHHHHHHHHHH
Confidence            777655444444445444443

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.38  E-value=7.1e-05  Score=72.26  Aligned_cols=57  Identities=21%  Similarity=0.172  Sum_probs=36.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSL   66 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~   66 (607)
                      +|+||||||||+++|+|++.+         +.++|.++...    ....|+.+|+...++..++.++..+
T Consensus         9 ~G~sGsGKSTl~~~la~~l~~---------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~   69 (176)
T PRK09825          9 MGVSGSGKSLIGSKIAALFSA---------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY   69 (176)
T ss_pred             ECCCCCCHHHHHHHHHHhcCC---------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence            599999999999999998643         36677665332    1124666666544444555555444

>PRK13764 ATPase; Provisional

Probab=97.37  E-value=0.00092  Score=75.86  Aligned_cols=63  Identities=19%  Similarity=0.357  Sum_probs=48.3

Q ss_pred             HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEec---------------CChhHHHhhhcceeeecCCee
Q 007344          124 LIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH---------------QPRGSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       124 L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H---------------~p~~~i~~~~D~v~lL~~G~i  188 (607)
                      |..+|+++++||.-..-|       ++.+..++..|..++.|.|               +. ..+...+|+++.+++|++
T Consensus       321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~G~I  392 (602)
T PRK13764        321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIEDGEV  392 (602)
T ss_pred             HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeCCEE
Confidence            678999999999985322       4555555566888999999               53 356668999999999999


Q ss_pred             --eeeCCC
Q 007344          189 --VYAGPA  194 (607)
Q Consensus       189 --v~~G~~  194 (607)
                        +|.+..
T Consensus       393 ~~v~~~~~  400 (602)
T PRK13764        393 SKVYDLEF  400 (602)
T ss_pred             EEEEeeee
Confidence              777653

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=97.32  E-value=0.00015  Score=79.12  Aligned_cols=153  Identities=18%  Similarity=0.181  Sum_probs=90.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-----------ccceEEEEccCCCCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-----------KAYKFAYVRQEDLFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-----------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~   69 (607)
                      +|+||+|||||+++|+|..+++.  .+-|.|-.+|.+..+           .+..+++++|++..+..+++.|++.+.++
T Consensus       161 ~G~sGaGKSTLl~~I~g~~~~dv--~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAE  238 (434)
T PRK07196        161 MAGSGVGKSVLLGMITRYTQADV--VVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIAT  238 (434)
T ss_pred             ECCCCCCccHHHHHHhcccCCCe--EEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHHHHHHHH
Confidence            59999999999999999887652  223556566654322           12248999999999999999999988776


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHH-HHHHHHHhhCCCeEEEeCC--CCCCCHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR-LSLACELIASPSVIYADEP--TTGLDAFQAE  146 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR-vsIa~aL~~~p~illLDEP--tsGLD~~~~~  146 (607)
                      ......       +.|--+++.  +     |..          -+-+| +++           .+-||  +.|-.+....
T Consensus       239 yfr~~g-------~~Vll~~Ds--l-----tr~----------a~A~REisl-----------~~ge~P~~~Gyp~svf~  283 (434)
T PRK07196        239 YYRDKG-------HDVLLLVDS--L-----TRY----------AMAQREIAL-----------SLGEPPATKGYPPSAFS  283 (434)
T ss_pred             Hhhhcc-------CCEEEeecc--h-----hHH----------HhhhhHHHH-----------hcCCCCcccCcCHHHHH
Confidence            532110       001000000  0     000          00011 111           22344  3377777777


Q ss_pred             HHHHHHHHHH--h-cC-CeEEEEecCChhHH-HhhhcceeeecCCeeee
Q 007344          147 KVMEALRQLA--Q-DG-HTVICSIHQPRGSV-YFKFDDIVLLTEGKLVY  190 (607)
Q Consensus       147 ~i~~~L~~la--~-~g-~tvi~~~H~p~~~i-~~~~D~v~lL~~G~iv~  190 (607)
                      .+-+++.+..  + .| .|.+-+..-+.+++ .-..|.+.-+-+|+++.
T Consensus       284 ~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivL  332 (434)
T PRK07196        284 IIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVL  332 (434)
T ss_pred             HhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEE
Confidence            7777777753  1 23 36666665544332 23567788888999985

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=97.31  E-value=0.00016  Score=79.05  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=27.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccce-EEEECCeeCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSG-LLEVNGKPSSN   40 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G-~I~~~G~~~~~   40 (607)
                      +|||||||||||+  +|+..++     +| +|.++|.++..
T Consensus        38 ~G~SGsGKSTLLr--~~l~~~~-----sGg~I~ldg~~~~~   71 (504)
T TIGR03238        38 CGSSGDGKSEILA--ENKRKFS-----EGYEFFLDATHSFS   71 (504)
T ss_pred             ECCCCCCHHHHHh--cCCCCCC-----CCCEEEECCEECCC
Confidence            6999999999999  6777665     45 89999988754

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=97.29  E-value=0.00058  Score=64.49  Aligned_cols=65  Identities=23%  Similarity=0.181  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHH-hcC-CeEEEEecCChhHHHhhhccee
Q 007344          112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL-RQLA-QDG-HTVICSIHQPRGSVYFKFDDIV  181 (607)
Q Consensus       112 GGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L-~~la-~~g-~tvi~~~H~p~~~i~~~~D~v~  181 (607)
                      -+++++..+++++...|-++++    +..|......+.+.. +... ..+ ..+.++.|+ ...+.++++.+.
T Consensus       106 ~~~~~~~~~~~~~~~~p~ivv~----NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~gl~~l~~~l~  173 (176)
T cd01881         106 LKLYDLETILGLLTAKPVIYVL----NKIDLDDAEELEEELVRELALEEGAEVVPISAKT-EEGLDELIRAIY  173 (176)
T ss_pred             HHHhhhhhHHHHHhhCCeEEEE----EchhcCchhHHHHHHHHHHhcCCCCCEEEEehhh-hcCHHHHHHHHH
Confidence            3445666677778889999998    888876555554431 1122 223 355555555 445666666543

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	607
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		3e-13
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		3e-11
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		5e-11
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		7e-11
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		7e-11
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		7e-11
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		9e-11
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		1e-10
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		2e-10
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		8e-10
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		1e-09
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		2e-09
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		4e-09
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		4e-09
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		5e-09
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		1e-08
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		1e-08
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		1e-08
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		1e-08
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		2e-08
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		2e-08
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		3e-08
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		4e-08
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		4e-08
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		5e-08
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		6e-08
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		6e-08
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		1e-07
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		1e-07
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		1e-07
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		2e-07
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		2e-07
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		2e-07
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		2e-07
1g29_1	372	Malk Length = 372		2e-07
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		3e-07
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		3e-07
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		4e-07
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		4e-07
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		6e-07
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		6e-07
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		6e-07
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		6e-07
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		6e-07
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		9e-07
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		1e-06
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		1e-06
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		1e-06
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		2e-06
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		2e-06
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		3e-06
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		3e-06
1yqt_A	538	Rnase-L Inhibitor Length = 538		3e-06
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		7e-06
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		1e-05
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		1e-05
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		2e-05
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		2e-05
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		2e-05
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		3e-05
4dbl_C	249	Crystal Structure Of E159q Mutant Of Btucdf Length		4e-05
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		5e-05
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		5e-05
4fi3_C	249	Structure Of Vitamin B12 Transporter Btucd-F In A N		5e-05
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		6e-05
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		1e-04
2qi9_C	249	Abc-Transporter Btucd In Complex With Its Periplasm		2e-04
1sgw_A	214	Putative Abc Transporter (Atp-Binding Protein) From		2e-04
3pih_A	916	T. Maritima Uvra In Complex With Fluorescein-Modifi		2e-04
1l7v_C	249	Bacterial Abc Transporter Involved In B12 Uptake Le		3e-04
2vf7_A	842	Crystal Structure Of Uvra2 From Deinococcus Radiodu		3e-04
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		4e-04
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		6e-04

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 21/203 (10%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKP-----SSNKAYKFAYVRQEDL 53
           +G SG GK+TL+N++       PR +   SG + ++G       + +   +   V+Q+++
Sbjct: 373 VGMSGGGKSTLINLI-------PRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 425
Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
            FS  TV+E + L       E   V E  +  N+  F + L    D+ VG+  V+ +SGG
Sbjct: 426 LFSD-TVKENILLGRPTATDE--EVVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSGG 481
Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
           +K+RLS+A   + +P ++  DE T+ LD      + EAL  L++D  T+I +    R S 
Sbjct: 482 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVA---HRLST 538
Query: 174 YFKFDDIVLLTEGKLVYAGPARD 196
               D IV++  G +V  G  R+
Sbjct: 539 ITHADKIVVIENGHIVETGTHRE 561

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 29/200 (14%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHL--SGLLEVNGKPSSN---KAYKFAYVRQEDLFF 55
           +GP+G+GKT  L ++AG        H+  SG + ++GK  ++   + +  A+V Q    F
Sbjct: 32  LGPTGAGKTLFLELIAG-------FHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLF 84
Query: 56  SQLTVRETLSLA---AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
             + V++ L       +++ P+ +    RD  +  LL              D     +SG
Sbjct: 85  PHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL--------------DRNPLTLSG 130
Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
           GE++R++LA  L+ +P ++  DEP + LD    E   E L  L +     +  I   +  
Sbjct: 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190
Query: 173 VYFKFDDIVLLTEGKLVYAG 192
                D I ++ +GKL+  G
Sbjct: 191 ARIMADRIAVVMDGKLIQVG 210

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 41/188 (21%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY------------KFAYV 48
           MGPSGSGK+T+LN++             G L+   KP+  + Y            +   +
Sbjct: 37  MGPSGSGKSTMLNII-------------GCLD---KPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 49  RQEDL--FFSQLTVRETLSLAAELQLPEI------LSVEERDEYVNSLLFKLGLVSCADS 100
           R++ +   F Q  +   L+    ++LP I      +S EER +     L     ++  + 
Sbjct: 81  RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECL----KMAELEE 136
Query: 101 NVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDG 159
              + K   +SGG+++R+++A  L  +P +I AD+PT  LD+   EK+M+ L++L  +DG
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG 196
Query: 160 HTVICSIH 167
            TV+   H
Sbjct: 197 KTVVVVTH 204

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 98/194 (50%), Gaps = 14/194 (7%)
Query: 1   MGPSGSGKTTLLNVLAG-QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +GPSG GK+TLL ++AG + + S  L + G   +N  P + +     +  Q    +  L+
Sbjct: 35  VGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPAERGVGMVF--QSYALYPHLS 91
Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           V E +S   +L   +   + +R   VN +   L L     +++ D K + +SGG+++R++
Sbjct: 92  VAENMSFGLKLAGAKKEVINQR---VNQVAEVLQL-----AHLLDRKPKALSGGQRQRVA 143
Query: 120 LACELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
           +   L+A PSV   DEP + LD A + +  +E  R   + G T+I   H    ++    D
Sbjct: 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA-D 202
Query: 179 DIVLLTEGKLVYAG 192
            IV+L  G++   G
Sbjct: 203 KIVVLDAGRVAQVG 216

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 19/177 (10%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEV-NGKPSSNKAYKFAYVRQEDL--FFSQ 57
           MGPSGSGK+T+LN++    +  P     G + + N K +     +   +R++ +   F Q
Sbjct: 37  MGPSGSGKSTMLNIIG--CLDKP---TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91
Query: 58  LTVRETLSLAAELQLPEI------LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
             +   L+    ++LP I      +S EER +     L    L    +    + K   +S
Sbjct: 92  FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL----EERFANHKPNQLS 147
Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIH 167
           GG+++R+++A  L  +P +I AD+PT  LD+   EK+M+ L++L  +DG TV+   H
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 98/194 (50%), Gaps = 14/194 (7%)
Query: 1   MGPSGSGKTTLLNVLAG-QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +GPSG GK+TLL ++AG + + S  L + G   +N  P + +     +  Q    +  L+
Sbjct: 35  VGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPAERGVGMVF--QSYALYPHLS 91
Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           V E +S   +L   +   + +R   VN +   L L     +++ D K + +SGG+++R++
Sbjct: 92  VAENMSFGLKLAGAKKEVINQR---VNQVAEVLQL-----AHLLDRKPKALSGGQRQRVA 143
Query: 120 LACELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
           +   L+A PSV   DEP + LD A + +  +E  R   + G T+I   H    ++    D
Sbjct: 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA-D 202
Query: 179 DIVLLTEGKLVYAG 192
            IV+L  G++   G
Sbjct: 203 KIVVLDAGRVAQVG 216

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 24/202 (11%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKP--SSNKAY---KFAYVRQEDL 53
           +GPSGSGK+T+L++L        RL+   SG + ++G      N  +   K   V QE +
Sbjct: 376 VGPSGSGKSTVLSLLL-------RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 428
Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERD---EYVNSLLFKLGLVSCADSNVGDAKVRGI 110
            FS  ++ E ++  A+   P  ++ EE     E  N++ F        ++ VG+  V  +
Sbjct: 429 LFS-CSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-L 484
Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
           SGG+K+R+++A  L+ +P ++  DE T+ LDA     V EAL +L  DG TV+   H  R
Sbjct: 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAH--R 541
Query: 171 GSVYFKFDDIVLLTEGKLVYAG 192
            S     + + +L +GK+   G
Sbjct: 542 LSTIKNANMVAVLDQGKITEYG 563

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 24/202 (11%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKP--SSNKAY---KFAYVRQEDL 53
           +GPSGSGK+T+L++L        RL+   SG + ++G      N  +   K   V QE +
Sbjct: 407 VGPSGSGKSTVLSLLL-------RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 459
Query: 54  FFSQLTVRETLSLAAELQLPEILSVEERD---EYVNSLLFKLGLVSCADSNVGDAKVRGI 110
            FS  ++ E ++  A+   P  ++ EE     E  N++ F        ++ VG+  V  +
Sbjct: 460 LFS-CSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-L 515
Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
           SGG+K+R+++A  L+ +P ++  DE T+ LDA     V EAL +L  DG TV+   H   
Sbjct: 516 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHHL- 573
Query: 171 GSVYFKFDDIVLLTEGKLVYAG 192
            S     + + +L +GK+   G
Sbjct: 574 -STIKNANMVAVLDQGKITEYG 594

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 14/194 (7%)
Query: 1   MGPSGSGKTTLLNVLAG-QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +GPSG GK+TLL ++AG + + S  L + G   +N  P + +     +  Q    +  L+
Sbjct: 35  VGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPAERGVGMVF--QSYALYPHLS 91
Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           V E +S   +L   +   + +R   VN +   L L     +++ D K + +SGG+++R++
Sbjct: 92  VAENMSFGLKLAGAKKEVINQR---VNQVAEVLQL-----AHLLDRKPKALSGGQRQRVA 143
Query: 120 LACELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
           +   L+A PSV   D+P + LD A + +  +E  R   + G T+I   H    ++    D
Sbjct: 144 IGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA-D 202
Query: 179 DIVLLTEGKLVYAG 192
            IV+L  G++   G
Sbjct: 203 KIVVLDAGRVAQVG 216

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 18/199 (9%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASP-RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +GP+G+GK+TLL +L G L  S    HL G   +N       A   A +RQ    +S+L 
Sbjct: 43  IGPNGAGKSTLLRLLTGYLSPSHGECHLLGQ-NLNSWQPKALARTRAVMRQ----YSELA 97
Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
              ++S   ++        ++R + +  ++ +   ++ A  +      R +SGGE++R+ 
Sbjct: 98  FPFSVSEVIQMGRAPYGGSQDR-QALQQVMAQTDCLALAQRDY-----RVLSGGEQQRVQ 151
Query: 120 LACELIA------SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
           LA  L        +P  ++ DEPT+ LD +  +  +  LRQL +     +C +       
Sbjct: 152 LARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLA 211
Query: 174 YFKFDDIVLLTEGKLVYAG 192
               D I+LL +GKLV  G
Sbjct: 212 ALYADRIMLLAQGKLVACG 230

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 18/200 (9%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK----FAYVRQEDLFFS 56
           +GP+G+GKTT L +++  +  S     SG++ V GK    + ++     +Y+ +E   + 
Sbjct: 47  IGPNGAGKTTTLRIISTLIKPS-----SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYR 101
Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
            +   E L   A         +EE  E           ++     + D +V   S G  +
Sbjct: 102 NMQGIEYLRFVAGFYASSSSEIEEMVERATE-------IAGLGEKIKD-RVSTYSKGMVR 153
Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           +L +A  L+ +P +   DEPT+GLD   A +V + L+Q +Q+G T++ S H     V F 
Sbjct: 154 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFL 212
Query: 177 FDDIVLLTEGKLVYAGPARD 196
            D I L+  G +V  G   +
Sbjct: 213 CDRIALIHNGTIVETGTVEE 232

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 19/176 (10%)
Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEV-NGKPSSNKAYKFAYVRQEDL--FFSQL 58
           GPSGSGK+T LN++    +  P     G + + N K +     +   +R++ +   F Q 
Sbjct: 38  GPSGSGKSTXLNIIG--CLDKP---TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92
Query: 59  TVRETLSLAAELQLPEIL------SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
            +   L+    ++LP I       S EER +     L    L    +    + K   +SG
Sbjct: 93  NLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAEL----EERFANHKPNQLSG 148
Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIH 167
           G+++R+++A  L  +P +I ADEPT  LD+   EK+ + L++L  +DG TV+   H
Sbjct: 149 GQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 25/206 (12%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQ---------E 51
           +G +G GK+TL     G L  S     SG +  + KP          +R+         +
Sbjct: 40  LGGNGVGKSTLFQNFNGILKPS-----SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPD 94
Query: 52  DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
           +  FS    ++    A  ++LPE    +E  + V++ L + G+      ++ D     +S
Sbjct: 95  NQLFSASVYQDVSFGAVNMKLPE----DEIRKRVDNALKRTGI-----EHLKDKPTHCLS 145
Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPR 170
            G+KKR+++A  L+  P V+  DEPT GLD     ++M+ L ++ ++ G T+I + H   
Sbjct: 146 FGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI- 204
Query: 171 GSVYFKFDDIVLLTEGKLVYAGPARD 196
             V    D++ ++ EG+++  G  ++
Sbjct: 205 DIVPLYCDNVFVMKEGRVILQGNPKE 230

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 99/202 (49%), Gaps = 17/202 (8%)
Query: 1   MGPSGSGKTTLLNVLAG-QLMASPRLHLSG-LLEVNGK---PSSNKAYKFAYVRQEDLFF 55
           +GPSG+GKTT + ++AG  + ++  L+    L+  NGK   P  ++  K   V Q    +
Sbjct: 37  LGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR--KIGMVFQTWALY 94
Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
             LT  E ++            + +R E V  +L           +V +   R +SGG++
Sbjct: 95  PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL--------DIHHVLNHFPRELSGGQQ 146
Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIHQPRGSVY 174
           +R++LA  L+  PS++  DEP + LDA   +     ++++ ++ G T++   H P   ++
Sbjct: 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIF 205
Query: 175 FKFDDIVLLTEGKLVYAGPARD 196
              D + +L +GKLV  G   D
Sbjct: 206 AIADRVGVLVKGKLVQVGKPED 227

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 21/200 (10%)
Query: 1    MGPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNG------KPSSNKAYKFAYVRQED 52
            +GPSG GK+T++ +L        R +  L G + ++G       P   ++ + A V QE 
Sbjct: 1111 VGPSGCGKSTVVALL-------ERFYDTLGGEIFIDGSEIKTLNPEHTRS-QIAIVSQEP 1162
Query: 53   LFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
              F   ++ E +    +     +  VEE     N   F   L    ++ VGD   + +SG
Sbjct: 1163 TLF-DCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQ-LSG 1220
Query: 113  GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
            G+K+R+++A  L+ +P ++  DE T+ LD  ++EKV++     A++G T I   H  R +
Sbjct: 1221 GQKQRIAIARALVRNPKILLLDEATSALDT-ESEKVVQEALDRAREGRTCIVIAH--RLN 1277
Query: 173  VYFKFDDIVLLTEGKLVYAG 192
                 D I +++ G ++  G
Sbjct: 1278 TVMNADCIAVVSNGTIIEKG 1297

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 25/199 (12%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-----AYVRQEDLFF 55
           +G SG GK+T +     QLM      L G++ ++G+       ++       V QE + F
Sbjct: 422 VGNSGCGKSTTV-----QLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 56  SQLTVRETLSLAAE-LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRG--ISG 112
           +  T+ E +    E + + EI   E+  +  N+  F + L    D+ VG+   RG  +SG
Sbjct: 477 AT-TIAENIRYGREDVTMDEI---EKAVKEANAYDFIMKLPHQFDTLVGE---RGAQLSG 529
Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ---- 168
           G+K+R+++A  L+ +P ++  DE T+ LD  ++E V++A    A++G T I   H+    
Sbjct: 530 GQKQRIAIARALVRNPKILLLDEATSALDT-ESEAVVQAALDKAREGRTTIVIAHRLSTV 588
Query: 169 PRGSVYFKFDDIVLLTEGK 187
               V   FD  V++ +G 
Sbjct: 589 RNADVIAGFDGGVIVEQGN 607

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 112/251 (44%), Gaps = 24/251 (9%)
Query: 1   MGPSGSGKTTLLNVLAGQLM-ASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +GPSG GKTT L +LAG     S  ++   +L VN  P   K  +   V Q    +  +T
Sbjct: 35  LGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVL-VNDIPP--KYREVGMVFQNYALYPHMT 91
Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           V E ++     +    +S +E ++ V  +  KL +      N+ D K   +SGG+++R++
Sbjct: 92  VFENIAFPLRARR---ISKDEVEKRVVEIARKLLI-----DNLLDRKPTQLSGGQQQRVA 143
Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEA-LRQLAQD-GHTVICSIHQPRGSVYFKF 177
           LA  L+  P V+  DEP + LDA     +M A ++ L Q+ G T +   H  +       
Sbjct: 144 LARALVKQPKVLLFDEPLSNLDA-NLRMIMRAEIKHLQQELGITSVYVTHD-QAEAMTMA 201
Query: 178 DDIVLLTEGKLV-YAGPAR--DEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVY 234
             I +  +GKLV Y  P    D P   F       P    P  FL D  SV   + +++ 
Sbjct: 202 SRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNP----PTNFLRDF-SVSVENKQTIL 256
Query: 235 LSQKRIDSLAE 245
                I  L E
Sbjct: 257 KRDDVIIKLPE 267

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 21/197 (10%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-----AYVRQEDLFF 55
           +G SG GK+T +     QLM      L G++ ++G+       ++       V QE + F
Sbjct: 422 VGNSGCGKSTTV-----QLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 56  SQLTVRETLSLAAE-LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
           +  T+ E +    E + + EI   E+  +  N+  F + L    D+ VG+   + +SGG+
Sbjct: 477 AT-TIAENIRYGREDVTMDEI---EKAVKEANAYDFIMKLPHQFDTLVGERGAQ-LSGGQ 531
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ----PR 170
           K+R+++A  L+ +P ++  DE T+ LD  ++E V++A    A++G T I   H+      
Sbjct: 532 KQRIAIARALVRNPKILLLDEATSALDT-ESEAVVQAALDKAREGRTTIVIAHRLSTVRN 590
Query: 171 GSVYFKFDDIVLLTEGK 187
             V   FD  V++ +G 
Sbjct: 591 ADVIAGFDGGVIVEQGN 607

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 28/180 (15%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP---------SSNKAYKFAYVRQE 51
           +G SGSGK+TLL +L   L+ +P     G + + GK          S  +  K  +V Q 
Sbjct: 36  IGASGSGKSTLLYILG--LLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQF 90
Query: 52  DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRG-- 109
                +LT  E + +            +ER EY   LL +LGL        GD   R   
Sbjct: 91  HYLIPELTALENVIVPMLKMGKPKKEAKERGEY---LLSELGL--------GDKLSRKPY 139
Query: 110 -ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
            +SGGE++R+++A  L   P +++ADEPT  LD+   ++VM+   ++ + G +++   H+
Sbjct: 140 ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 17/202 (8%)
Query: 1   MGPSGSGKTTLLNVLAG-QLMASPRLHLSG-LLEVNGK---PSSNKAYKFAYVRQEDLFF 55
           +GPSG+GKTT + ++AG  + ++  L+    L+  NGK   P  ++  K   V Q    +
Sbjct: 37  LGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR--KIGMVFQTWALY 94
Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
             LT  E ++            + +R E V  +L           +V +   R +SG ++
Sbjct: 95  PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL--------DIHHVLNHFPRELSGAQQ 146
Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIHQPRGSVY 174
           +R++LA  L+  PS++  DEP + LDA   +     ++++ ++ G T++   H P   ++
Sbjct: 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIF 205
Query: 175 FKFDDIVLLTEGKLVYAGPARD 196
              D + +L +GKLV  G   D
Sbjct: 206 AIADRVGVLVKGKLVQVGKPED 227

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 26/201 (12%)
Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-----KFAYVRQEDLFFS 56
           GPSG GK+T+ ++L  +    P    +G + ++G+P  N +      +  +V Q+    +
Sbjct: 35  GPSGGGKSTIFSLL--ERFYQP---TAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA 89
Query: 57  QLTVRETLSLAAE-----LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
             T+RE L+   E       L ++L +     +V ++  +L      ++ VG+  V+ IS
Sbjct: 90  G-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL------NTEVGERGVK-IS 141
Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171
           GG+++RL++A   + +P ++  DE T  LD+     V +AL  L + G T +   H  R 
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAH--RL 198
Query: 172 SVYFKFDDIVLLTEGKLVYAG 192
           S     D I  + +G++  +G
Sbjct: 199 STIVDADKIYFIEKGQITGSG 219

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQ 57
           +GPSGSGKTT+L ++AG  +  P     G + + GK  ++   +      V Q    F  
Sbjct: 47  LGPSGSGKTTILRLIAG--LERP---TKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQH 101
Query: 58  LTVRETLSLA-AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
           +TV + +S    E ++P+    +E D  V  LL  + L S A+    +     +SGG+++
Sbjct: 102 MTVYDNVSFGLREKRVPK----DEMDARVRELLRFMRLESYANRFPHE-----LSGGQQQ 152
Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYF 175
           R++LA  L   P V+  DEP   +D     ++   +RQ+  + G T +   H    ++  
Sbjct: 153 RVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV 212
Query: 176 KFDDIVLLTEGKL 188
             D +++L EG +
Sbjct: 213 A-DRVLVLHEGNV 224

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 33/229 (14%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-------L 53
           +GPSGSGK+T L  L   L+        G + ++G     K      VR+E         
Sbjct: 56  IGPSGSGKSTFLRCL--NLLED---FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN 110
Query: 54  FFSQLTVRETLSLA--AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
            F  +TV   ++LA     + P     E+ +     LL K+GL   A      A    +S
Sbjct: 111 LFPHMTVLNNITLAPMKVRKWPR----EKAEAKAMELLDKVGLKDKAH-----AYPDSLS 161
Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171
           GG+ +R+++A  L   P ++  DEPT+ LD     +V+  ++QLA +G T++   H+  G
Sbjct: 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE-MG 220
Query: 172 SVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLA 220
                 D ++ +  G ++  G   D     F R     P H     FL+
Sbjct: 221 FAREVGDRVLFMDGGYIIEEGKPED----LFDR-----PQHERTKAFLS 260

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 33/229 (14%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-------L 53
           +GPSGSGK+T L  L   L+        G + ++G     K      VR+E         
Sbjct: 35  IGPSGSGKSTFLRCL--NLLED---FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN 89
Query: 54  FFSQLTVRETLSLA--AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
            F  +TV   ++LA     + P     E+ +     LL K+GL   A      A    +S
Sbjct: 90  LFPHMTVLNNITLAPMKVRKWPR----EKAEAKAMELLDKVGLKDKAH-----AYPDSLS 140
Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171
           GG+ +R+++A  L   P ++  DEPT+ LD     +V+  ++QLA +G T++   H+  G
Sbjct: 141 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE-MG 199
Query: 172 SVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLA 220
                 D ++ +  G ++  G   D     F R     P H     FL+
Sbjct: 200 FAREVGDRVLFMDGGYIIEEGKPED----LFDR-----PQHERTKAFLS 239

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 25/205 (12%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK-----FAYVRQEDLFF 55
           +G +GSGK+TL+N++  +L+   R    G +EV+         K      + V QE + F
Sbjct: 375 LGETGSGKSTLMNLIP-RLIDPER----GRVEVDELDVRTVKLKDLRGHISAVPQETVLF 429
Query: 56  SQLTVRETLSL----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
           S  T++E L      A + ++ E   + +  +++      + L    DS V     R  S
Sbjct: 430 SG-TIKENLKWGREDATDDEIVEAAKIAQIHDFI------ISLPEGYDSRVERGG-RNFS 481
Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171
           GG+K+RLS+A  L+  P V+  D+ T+ +D    +++++ L++  +   T I +   P  
Sbjct: 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTA 541
Query: 172 SVYFKFDDIVLLTEGKLVYAGPARD 196
            +    D I++L EGK+   G  ++
Sbjct: 542 LLA---DKILVLHEGKVAGFGTHKE 563

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 22/210 (10%)
Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF------AYVRQEDLFF 55
           G +GSGK+TLL ++AG +  +     SG +  +G+    K Y+       A+   ED FF
Sbjct: 40  GNTGSGKSTLLQIVAGLIEPT-----SGDVLYDGE--RKKGYEIRRNIGIAFQYPEDQFF 92
Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
           ++  V + ++ A +   P+      RD  V  +   +  V     +  D     +SGGEK
Sbjct: 93  AE-RVFDEVAFAVKNFYPD------RDP-VPLVKKAMEFVGLDFDSFKDRVPFFLSGGEK 144
Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
           +R+++A  ++  P ++  DEP  GLD      ++  + +    G TVI   H    +V  
Sbjct: 145 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVIN 203
Query: 176 KFDDIVLLTEGKLVYAGPARDEPLAYFSRF 205
             D +V+L +GK V+ G   +    Y  RF
Sbjct: 204 HVDRVVVLEKGKKVFDGTRMEFLEKYDPRF 233

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 22/210 (10%)
Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF------AYVRQEDLFF 55
           G +GSGK+TLL ++AG +  +     SG +  +G+    K Y+       A+   ED FF
Sbjct: 42  GNTGSGKSTLLQIVAGLIEPT-----SGDVLYDGE--RKKGYEIRRNIGIAFQYPEDQFF 94
Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
           ++  V + ++ A +   P+      RD  V  +   +  V     +  D     +SGGEK
Sbjct: 95  AE-RVFDEVAFAVKNFYPD------RDP-VPLVKKAMEFVGLDFDSFKDRVPFFLSGGEK 146
Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
           +R+++A  ++  P ++  DEP  GLD      ++  + +    G TVI   H    +V  
Sbjct: 147 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVIN 205
Query: 176 KFDDIVLLTEGKLVYAGPARDEPLAYFSRF 205
             D +V+L +GK V+ G   +    Y  RF
Sbjct: 206 HVDRVVVLEKGKKVFDGTRMEFLEKYDPRF 235

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 27/199 (13%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS------NKAYKFAYVRQEDLF 54
           +G +GSGKTTLL +LAG L A+  + L      +G P+       N  Y F     + + 
Sbjct: 43  VGKNGSGKTTLLKILAGLLAAAGEIFL------DGSPADPFLLRKNVGYVFQNPSSQII- 95
Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
               TV E ++ + E+     L   E  + +  +L  +GL     S +  A    +SGG+
Sbjct: 96  --GATVEEDVAFSLEIMG---LDESEMRKRIKKVLELVGL-----SGLAAADPLNLSGGQ 145
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
           K+RL++A  L      +  DEP + LD     ++ + L  L  +G  +I   H+     Y
Sbjct: 146 KQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELE---Y 202
Query: 175 FKFDDIVL-LTEGKLVYAG 192
               D +L ++ G + + G
Sbjct: 203 LDDMDFILHISNGTIDFCG 221

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 21/210 (10%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASP-RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +GP+GSGK+TL+NV+ G L A   R++       N +P+    Y      Q      ++T
Sbjct: 39  IGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMT 98
Query: 60  VRETLSLAAELQLPE-----------ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
           V E L L  E+   E           I   EE  E    +L  L L    D   G+    
Sbjct: 99  VLENL-LIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE---- 153
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
            +SGG+ K + +   L+ +P +I  DEP  G+    A  +   + +L   G T +   H 
Sbjct: 154 -LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEH- 211
Query: 169 PRGSVYFKF-DDIVLLTEGKLVYAGPARDE 197
            R  +   + D + ++  G+++  G   +E
Sbjct: 212 -RLDIVLNYIDHLYVMFNGQIIAEGRGEEE 240

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 91/191 (47%), Gaps = 9/191 (4%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK--PSSNKAYKFAYVRQEDLFFSQL 58
           +G SG+GK+TL+  +   L+  P     G + V+G+   + +++      RQ  + F   
Sbjct: 37  IGASGAGKSTLIRCV--NLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHF 91
Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
            +  + ++   + LP  L    +DE    +   L LV   D +  D+    +SGG+K+R+
Sbjct: 92  NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH--DSYPSNLSGGQKQRV 149
Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
           ++A  L ++P V+  DE T+ LD      ++E L+ + +     I  I      V    D
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICD 209
Query: 179 DIVLLTEGKLV 189
            + +++ G+L+
Sbjct: 210 CVAVISNGELI 220

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 20/202 (9%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK------FAYVRQEDLF 54
           +G +G+GKTT L+ +AG + A       G +  NG+  +NK          A V +    
Sbjct: 38  IGANGAGKTTTLSAIAGLVRAQ-----KGKIIFNGQDITNKPAHVINRXGIALVPEGRRI 92
Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
           F +LTV E L   A     +   ++   E++ SL  +L         +G      +SGGE
Sbjct: 93  FPELTVYENLXXGA-YNRKDKEGIKRDLEWIFSLFPRL---KERLKQLGGT----LSGGE 144
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
           ++ L++   L + P ++  DEP+ GL      +V E ++++ Q+G T++       G++ 
Sbjct: 145 QQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALK 204
Query: 175 FKFDDIVLLTEGKLVYAGPARD 196
                 VL T G++V  G A +
Sbjct: 205 VAHYGYVLET-GQIVLEGKASE 225

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 17/175 (9%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK-PSSNKAYKFAYVRQEDLFFSQLT 59
           +GP+G+GKTT + +LAGQL+ +       L E N    +  +A++   ++    +F +L 
Sbjct: 123 VGPNGTGKTTAVKILAGQLIPN-------LCEDNDSWDNVIRAFRGNELQN---YFERLK 172
Query: 60  ---VRETLSLAAELQLPEILS--VEERDEYVNSL-LFKLGLVSCADSNVGDAKVRGISGG 113
              +R  +       LP+ +   V E  + V+ +  F+  +      NV D ++  +SGG
Sbjct: 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGG 232
Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           E +R+++A  L+      + DEP++ LD  Q  KV   +R+LA +G  V+   H 
Sbjct: 233 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 98/197 (49%), Gaps = 8/197 (4%)
Query: 1   MGPSGSGKTTLLNVLAGQL-MASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +G SGSGK+T+ N+      + S  + L G  +V     +N    FA V Q    F+  T
Sbjct: 375 VGRSGSGKSTIANLFTRFYDVDSGSICLDG-HDVRDYKLTNLRRHFALVSQNVHLFND-T 432
Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           +   ++ AAE +      +E+     +++ F   +    D+ +G+     +SGG+++R++
Sbjct: 433 IANNIAYAAEGEYTR-EQIEQAARQAHAMEFIENMPQGLDTVIGENGT-SLSGGQRQRVA 490
Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD 179
           +A  L+    V+  DE T+ LD  ++E+ ++A     Q   TV+   H  R S   + D+
Sbjct: 491 IARALLRDAPVLILDEATSALDT-ESERAIQAALDELQKNKTVLVIAH--RLSTIEQADE 547
Query: 180 IVLLTEGKLVYAGPARD 196
           I+++ EG+++  G   D
Sbjct: 548 ILVVDEGEIIERGRHAD 564

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 17/175 (9%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK-PSSNKAYKFAYVRQEDLFFSQLT 59
           +GP+G+GKTT + +LAGQL+ +       L E N    +  +A++   ++    +F +L 
Sbjct: 109 VGPNGTGKTTAVKILAGQLIPN-------LCEDNDSWDNVIRAFRGNELQN---YFERLK 158
Query: 60  ---VRETLSLAAELQLPEILS--VEERDEYVNSL-LFKLGLVSCADSNVGDAKVRGISGG 113
              +R  +       LP+ +   V E  + V+ +  F+  +      NV D ++  +SGG
Sbjct: 159 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGG 218
Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           E +R+++A  L+      + DEP++ LD  Q  KV   +R+LA +G  V+   H 
Sbjct: 219 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 102/244 (41%), Gaps = 41/244 (16%)
Query: 1   MGPSGSGKTTLLNVLAG-------------QLMASPRLHLSGLLEVNGKPSSNKAYKFAY 47
           +GPSG GKTT L ++AG             +L+A P           G     K    A 
Sbjct: 35  LGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPE---------KGIFVPPKDRDIAM 85
Query: 48  VRQEDLFFSQLTVRETLSLAAEL-QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAK 106
           V Q    +  +TV + ++   +L ++P     +E D+ V  +   LGL    +      K
Sbjct: 86  VFQSYALYPHMTVYDNIAFPLKLRKVPR----QEIDQRVREVAELLGLTELLNR-----K 136
Query: 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICS 165
            R +SGG+++R++L   ++  P V   DEP + LDA    ++   L++L  Q G T I  
Sbjct: 137 PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYV 196
Query: 166 IHQPRGSVYFKFDDIVLLTEGKLVYAG---PARDEPLAYFSRFGYTCPDHVNPAEFLADL 222
            H    ++    D I ++  G L   G      D+P   F       P    P  FL  +
Sbjct: 197 THDQVEAMTMG-DRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSP----PMNFLDAI 251
Query: 223 ISVD 226
           ++ D
Sbjct: 252 VTED 255

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 21/210 (10%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASP-RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +GP+GSGK+TL+NV+ G L A   R++       N +P+    Y      Q      ++T
Sbjct: 39  IGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMT 98
Query: 60  VRETLSLAAELQLPE-----------ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
           V E L L  E+   E           I   EE  E    +L  L L    D   G+    
Sbjct: 99  VLENL-LIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE---- 153
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
            +SGG+ K + +   L+ +P +I  DEP  G+    A  +   + +L   G T +   H 
Sbjct: 154 -LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEH- 211
Query: 169 PRGSVYFKF-DDIVLLTEGKLVYAGPARDE 197
            R  +   + D + ++  G+++  G   +E
Sbjct: 212 -RLDIVLNYIDHLYVMFNGQIIAEGRGEEE 240

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 21/210 (10%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASP-RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +GP+GSGK+TL+NV+ G L A   R++       N +P+    Y      Q      ++T
Sbjct: 39  IGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMT 98
Query: 60  VRETLSLAAELQLPE-----------ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
           V E L L  E+   E           I   EE  E    +L  L L    D   G+    
Sbjct: 99  VLENL-LIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE---- 153
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
            +SGG+ K + +   L+ +P +I  D+P  G+    A  +   + +L   G T +   H 
Sbjct: 154 -LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEH- 211
Query: 169 PRGSVYFKF-DDIVLLTEGKLVYAGPARDE 197
            R  +   + D + ++  G+++  G   +E
Sbjct: 212 -RLDIVLNYIDHLYVMFNGQIIAEGRGEEE 240

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 91/191 (47%), Gaps = 9/191 (4%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK--PSSNKAYKFAYVRQEDLFFSQL 58
           +G SG+GK+TL+  +   L+  P     G + V+G+   + +++      RQ  + F   
Sbjct: 60  IGASGAGKSTLIRCV--NLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHF 114
Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
            +  + ++   + LP  L    +DE    +   L LV   D +  D+    +SGG+K+R+
Sbjct: 115 NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH--DSYPSNLSGGQKQRV 172
Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
           ++A  L ++P V+  D+ T+ LD      ++E L+ + +     I  I      V    D
Sbjct: 173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICD 232
Query: 179 DIVLLTEGKLV 189
            + +++ G+L+
Sbjct: 233 CVAVISNGELI 243

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 18/196 (9%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQ 57
           +GPSGSGK+TLL  +AG    +     SG +  + K  +    K      V Q    +  
Sbjct: 35  LGPSGSGKSTLLYTIAGIYKPT-----SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPH 89
Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           +TV + ++   EL+      ++++   V  +L    L++             +SGG+++R
Sbjct: 90  MTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ--------LSGGQQQR 141
Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFK 176
           +++A  L+  P V+  DEP + LDA    +V   L++L ++ G T +   H    ++   
Sbjct: 142 VAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMA 201
Query: 177 FDDIVLLTEGKLVYAG 192
            D I ++ EG+++  G
Sbjct: 202 -DRIAVIREGEILQVG 216

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           G+SGG+++R+++A  L+ +P ++  DE T+ LD      +M  + ++ + G TVI   H 
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH- 196
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD---EPLAYFS 203
            R S     D I+++ +GK+V  G  ++   EP + +S
Sbjct: 197 -RLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 233

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           G+SGG+++R+++A  L+ +P ++  DE T+ LD      +M  + ++ + G TVI   H 
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH- 202
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD---EPLAYFS 203
            R S     D I+++ +GK+V  G  ++   EP + +S
Sbjct: 203 -RLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 29/203 (14%)
Query: 1   MGPSGSGKTTLLNVLA-------GQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDL 53
           +GP+GSGKTT++N+L        GQ++          +++     S+       V Q+ +
Sbjct: 387 VGPTGSGKTTIVNLLMRFYDVDRGQILVDG-------IDIRKIKRSSLRSSIGIVLQDTI 439
Query: 54  FFSQLTVRETLSL----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRG 109
            FS  TV+E L      A + ++ E   +   D ++  L    G  +    N  D     
Sbjct: 440 LFST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHL--PEGYETVLTDNGED----- 491
Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
           +S G+++ L++    +A+P ++  DE T+ +D  + EK ++A      +G T I   H  
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDT-KTEKSIQAAMWKLMEGKTSIIIAH-- 548
Query: 170 RGSVYFKFDDIVLLTEGKLVYAG 192
           R +     D I++L +G++V  G
Sbjct: 549 RLNTIKNADLIIVLRDGEIVEMG 571

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           G+SGG+++R+++A  L+ +P ++  DE T+ LD      +M  + ++ + G TVI   H 
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH- 198
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD---EPLAYFS 203
            R S     D I+++ +GK+V  G  ++   EP + +S
Sbjct: 199 -RLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 235

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           G+SGG+++R+++A  L+ +P ++  DE T+ LD      +M  + ++ + G TVI   H 
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH- 198
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD---EPLAYFS 203
            R S     D I+++ +GK+V  G  ++   EP + +S
Sbjct: 199 -RLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 235

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-----KAYKFAYVRQEDLFF 55
           +GPSG GKTT L  +AG L    R  +     +   P        K    A V Q    +
Sbjct: 38  LGPSGCGKTTTLRXIAG-LEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQSYALY 96
Query: 56  SQLTVRETLSLAAEL-QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
              TV + ++   +L ++P+    +E D+ V  +   LGL    +      K R +SGG+
Sbjct: 97  PHXTVYDNIAFPLKLRKVPK----QEIDKRVREVAEXLGLTELLNR-----KPRELSGGQ 147
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICSIHQ 168
           ++R++L   +I  P V   DEP + LDA    K    L++L  Q G T I   H 
Sbjct: 148 RQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHD 202

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 44  KFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVG 103
           +   V Q    +S +TV E + + A +Q   +L + + D    +L + L  V   +   G
Sbjct: 94  RLTMVFQHFNLWSHMTVLENV-MEAPIQ---VLGLSKHDARERALKY-LAKVGIDERAQG 148
Query: 104 DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
              V  +SGG+++R+S+A  L   P V+  DEPT+ LD     +V+  ++QLA++G T++
Sbjct: 149 KYPVH-LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 207
Query: 164 CSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192
              H+  G        ++ L +GK+   G
Sbjct: 208 VVTHE-MGFARHVSSHVIFLHQGKIEEEG 235

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 9/191 (4%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK--PSSNKAYKFAYVRQEDLFFSQL 58
           +G SG+GK+TL+  +   L+  P     G + V+G+   + +++      RQ    F   
Sbjct: 60  IGASGAGKSTLIRCV--NLLERPT---EGSVLVDGQELTTLSESELTKARRQIGXIFQHF 114
Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
            +  + ++   + LP  L    +DE    +   L LV   D +  D+    +SGG+K+R+
Sbjct: 115 NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH--DSYPSNLSGGQKQRV 172
Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
           ++A  L ++P V+  D+ T+ LD      ++E L+ + +     I  I      V    D
Sbjct: 173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICD 232
Query: 179 DIVLLTEGKLV 189
            + +++ G+L+
Sbjct: 233 CVAVISNGELI 243

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           G+SGG+++R+++A  L+ +P ++  D+ T+ LD      +M  + ++ + G TVI   H 
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK-GRTVIIIAH- 202
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD---EPLAYFS 203
            R S     D I+++ +GK+V  G  ++   EP + +S
Sbjct: 203 -RLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 14/199 (7%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +G +GSGK+T+  +L     A   + + G   VN    ++       V Q+ + F++   
Sbjct: 52  VGHTGSGKSTIAKLLYRFYDAEGDIKIGGK-NVNKYNRNSIRSIIGIVPQDTILFNETIK 110
Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
              L    +    E++   +  +  +   F   L    D+ VG+  ++ +SGGE++R+++
Sbjct: 111 YNILYGKLDATDEEVIKATKSAQLYD---FIEALPKKWDTIVGNKGMK-LSGGERQRIAI 166
Query: 121 ACELIASPSVIYADEPTTGLDA---FQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           A  L+  P ++  DE T+ LD+   +  +K +E LR+      T+I   H  R S     
Sbjct: 167 ARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK----NRTLIIIAH--RLSTISSA 220
Query: 178 DDIVLLTEGKLVYAGPARD 196
           + I+LL +GK+V  G  +D
Sbjct: 221 ESIILLNKGKIVEKGTHKD 239

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 10/197 (5%)
Query: 1   MGPSGSGKTTLLNVLAGQ---LMASPRLHLSG--LLEVNGKPSSNKAYKFAYVRQEDLFF 55
           MGP+G+GK+TL  +LAG     +    + L G  +LE++    + K    A+  Q  +  
Sbjct: 35  MGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAF--QYPVEV 92
Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
             +T+   L LA + +L   + V E   +   +   L L+   +S +      G SGGEK
Sbjct: 93  PGVTIANFLRLALQAKLGREVGVAE---FWTKVKKALELLDWDESYLSRYLNEGFSGGEK 149
Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
           KR  +   L+  P+    DE  +GLD    + V   +  +       +   H  R   Y 
Sbjct: 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYI 209
Query: 176 KFDDIVLLTEGKLVYAG 192
           + D + ++ +G++V  G
Sbjct: 210 QPDKVHVMMDGRVVATG 226

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           G+SGG+++R+++A  L+ +P ++  DE T+ LD      +M  + ++ + G TVI  I  
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVI--IIA 195
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD---EPLAYFS 203
            R S     D I+++ +GK+V  G  ++   EP + +S
Sbjct: 196 ARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 233

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           G+SGG+++R+++A  L+ +P ++  DE T+ LD      +M  + ++ + G TVI  I  
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVI--IIA 201
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD---EPLAYFS 203
            R S     D I+++ +GK+V  G  ++   EP + +S
Sbjct: 202 ARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 15/174 (8%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRL-----HLSGLLEV-NGKPSSNKAYKFAYVRQEDLF 54
           +GP+G+GK+T + +LAGQL+  P L        G++    G    N   K        + 
Sbjct: 53  VGPNGTGKSTAVKILAGQLI--PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVV 110
Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
             Q    + +  A + ++ E+L   +    +  ++  L L      NV + +++ +SGGE
Sbjct: 111 KPQYV--DLIPKAVKGKVIELLKKADETGKLEEVVKALEL-----ENVLEREIQHLSGGE 163
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
            +R+++A  L+ + +  + DEP++ LD  Q      A+R+L+++G +V+   H 
Sbjct: 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 18/199 (9%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG---KPSSNKAYKFAYVRQEDLFFSQ 57
           +GP+G+GK+  L ++AG  +  P     G + +NG    P   +     +V Q+   F  
Sbjct: 30  LGPTGAGKSVFLELIAG--IVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH 84
Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           L+V   ++              ERD  V  +  KLG+     +++ D K   +SGGE++R
Sbjct: 85  LSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGI-----AHLLDRKPARLSGGERQR 134
Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           ++LA  L+  P ++  DEP + +D      +ME LR + ++    I  +           
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLA 194
Query: 178 DDIVLLTEGKLVYAGPARD 196
           D++ ++  G++V  G  ++
Sbjct: 195 DEVAVMLNGRIVEKGKLKE 213

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 23/207 (11%)
Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           G +G+GKTTLLN+L     A+     SG + + GK      Y    VRQ   F S   + 
Sbjct: 54  GLNGAGKTTLLNILNAYEPAT-----SGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLE 108
Query: 62  E------TLSLAAELQLPEILSVEERDEYV----NSLLFKLGLVSCADSNVGDAKVRGIS 111
           +       + +        I   ++ D+ +    + LL  +G  + A   +G      +S
Sbjct: 109 KFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGY-----LS 163
Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR- 170
            GEK+R+ +A  L   P V+  DEP  GLD F A + + ++     D +  +  I+    
Sbjct: 164 TGEKQRVXIARALXGQPQVLILDEPAAGLD-FIARESLLSILDSLSDSYPTLAXIYVTHF 222
Query: 171 -GSVYFKFDDIVLLTEGKLVYAGPARD 196
              +   F  I+LL +G+ +  G   D
Sbjct: 223 IEEITANFSKILLLKDGQSIQQGAVED 249

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 16/202 (7%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK------PSSNKA----YKFAYVRQ 50
           MGP+GSGK+TL   LAG+          G +E  GK      P           F Y  +
Sbjct: 52  MGPNGSGKSTLSATLAGR---EDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVE 108
Query: 51  EDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
                +Q  ++  L+     +  E L   +R ++ + +  K+ L+   +  +  +   G 
Sbjct: 109 IPGVSNQFFLQTALNAVRSYRGQETL---DRFDFQDLMEEKIALLKMPEDLLTRSVNVGF 165
Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
           SGGEKKR  +    +  P +   DE  +GLD    + V + +  L     + I   H  R
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225
Query: 171 GSVYFKFDDIVLLTEGKLVYAG 192
              Y K D + +L +G++V +G
Sbjct: 226 ILDYIKPDYVHVLYQGRIVKSG 247

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 16/202 (7%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK------PSSNKA----YKFAYVRQ 50
           MGP+GSGK+TL   LAG+          G +E  GK      P           F Y  +
Sbjct: 33  MGPNGSGKSTLSATLAGR---EDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVE 89
Query: 51  EDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
                +Q  ++  L+     +  E L   +R ++ + +  K+ L+   +  +  +   G 
Sbjct: 90  IPGVSNQFFLQTALNAVRSYRGQETL---DRFDFQDLMEEKIALLKMPEDLLTRSVNVGF 146
Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
           SGGEKKR  +    +  P +   DE  +GLD    + V + +  L     + I   H  R
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 206
Query: 171 GSVYFKFDDIVLLTEGKLVYAG 192
              Y K D + +L +G++V +G
Sbjct: 207 ILDYIKPDYVHVLYQGRIVKSG 228

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 89/195 (45%), Gaps = 16/195 (8%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASP---RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQ 57
           +GPSG GKTT L ++AG  +  P   R++  G  +V   P  ++     +  Q    +  
Sbjct: 43  LGPSGCGKTTTLRMIAG--LEEPTEGRIYF-GDRDVTYLPPKDRNISMVF--QSYAVWPH 97
Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           +TV E ++   +++      +++R  +   LL    L++   +         +SGG+++R
Sbjct: 98  MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ--------LSGGQRQR 149
Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           +++A  ++  P V+  DEP + LDA     +   +++L Q        +   +       
Sbjct: 150 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 209
Query: 178 DDIVLLTEGKLVYAG 192
           D I ++  G+L+  G
Sbjct: 210 DRIAVMNRGQLLQIG 224

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 89/195 (45%), Gaps = 16/195 (8%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASP---RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQ 57
           +GPSG GKTT L ++AG  +  P   R++  G  +V   P  ++     +  Q    +  
Sbjct: 44  LGPSGCGKTTTLRMIAG--LEEPTEGRIYF-GDRDVTYLPPKDRNISMVF--QSYAVWPH 98
Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           +TV E ++   +++      +++R  +   LL    L++   +         +SGG+++R
Sbjct: 99  MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ--------LSGGQRQR 150
Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           +++A  ++  P V+  DEP + LDA     +   +++L Q        +   +       
Sbjct: 151 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 210
Query: 178 DDIVLLTEGKLVYAG 192
           D I ++  G+L+  G
Sbjct: 211 DRIAVMNRGQLLQIG 225

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 98/210 (46%), Gaps = 19/210 (9%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +GPSG+GK+T+L +L      S     SG + ++G+  S      A +R       Q TV
Sbjct: 86  VGPSGAGKSTILRLLFRFYDIS-----SGCIRIDGQDISQVTQ--ASLRSHIGVVPQDTV 138
Query: 61  RETLSLAAELQLPEILS----VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
               ++A  ++   + +    VE   +        +       + VG+  ++ +SGGEK+
Sbjct: 139 LFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQ 197
Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           R+++A  ++ +P +I  DE T+ LD      +  +L ++  +  T++ +    R S    
Sbjct: 198 RVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVA---HRLSTVVN 254
Query: 177 FDDIVLLTEGKLVYAGPARDEPLAYFSRFG 206
            D I+++ +G +V  G  R E L   SR G
Sbjct: 255 ADQILVIKDGCIVERG--RHEAL--LSRGG 280

>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLT 59
           +GP+G+GK+TLL  +AG  M S +    G ++  G+P  +  A K A  R    + SQ  
Sbjct: 32  VGPNGAGKSTLLARMAG--MTSGK----GSIQFAGQPLEAWSATKLALHRA---YLSQ-- 80
Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
            ++T   A  +     L++ + D+    LL  +      D  +G +  + +SGGE +R+ 
Sbjct: 81  -QQTPPFATPVW--HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQ-LSGGEWQRVR 136
Query: 120 LACELI-----ASPS--VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
           LA  ++     A+P+  ++  D+P   LD  Q   + + L  L+Q G  ++ S H    +
Sbjct: 137 LAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHT 196
Query: 173 VYFKFDDIVLLTEGKLVYAGPARDEPL 199
           +        LL  GK++ +G  R+E L
Sbjct: 197 LRHAH-RAWLLKGGKMLASG-RREEVL 221

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 93/202 (46%), Gaps = 18/202 (8%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQL-- 58
           +G SGSGK+T+ +++        R +     E+       + Y  A +R +    SQ   
Sbjct: 375 VGRSGSGKSTIASLIT-------RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVH 427
Query: 59  ----TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
               TV   ++ A   Q      +EE      ++ F   + +  D+ +G+  V  +SGG+
Sbjct: 428 LFNDTVANNIAYARTEQYSR-EQIEEAARMAYAMDFINKMDNGLDTVIGENGVL-LSGGQ 485
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
           ++R+++A  L+    ++  DE T+ LD  ++E+ ++A     Q   T +   H  R S  
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDT-ESERAIQAALDELQKNRTSLVIAH--RLSTI 542
Query: 175 FKFDDIVLLTEGKLVYAGPARD 196
            K D+IV++ +G +V  G   D
Sbjct: 543 EKADEIVVVEDGVIVERGTHND 564

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 16/157 (10%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-----AYVRQEDLFF 55
           +GP+GSGK+T+  +L  Q +  P     G L ++GKP     +++     A V QE   F
Sbjct: 49  VGPNGSGKSTVAALL--QNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF 103
Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
            + +++E ++     Q P +  +        +  F  GL    D+ V +A  + +SGG++
Sbjct: 104 GR-SLQENIAYGLT-QKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQ-LSGGQR 160
Query: 116 KRLSLACELIASPSVIYADEPTTGLDA---FQAEKVM 149
           + ++LA  LI  P V+  D+ T+ LDA    Q E+++
Sbjct: 161 QAVALARALIRKPCVLILDDATSALDANSQLQVEQLL 197

>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLT 59
           +GP+G+GK+TLL  +AG  M S +    G ++  G+P  +  A K A  R    + SQ  
Sbjct: 32  VGPNGAGKSTLLARMAG--MTSGK----GSIQFAGQPLEAWSATKLALHRA---YLSQ-- 80
Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
            ++T   A  +     L++ + D+    LL  +      D  +G +  + +SGGE +R+ 
Sbjct: 81  -QQTPPFATPVW--HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQ-LSGGEWQRVR 136
Query: 120 LACELI-----ASPS--VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
           LA  ++     A+P+  ++  D+P   LD  Q   + + L  L+Q G  ++ S H    +
Sbjct: 137 LAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHT 196
Query: 173 VYFKFDDIVLLTEGKLVYAGPARDEPL 199
           +        LL  GK++ +G  R+E L
Sbjct: 197 LRHAH-RAWLLKGGKMLASG-RREEVL 221

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-----AYVRQEDLFF 55
           +GP+GSGK+T+  +L  Q +  P     G + ++G+P     + +     A V QE L F
Sbjct: 51  VGPNGSGKSTVAALL--QNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLF 105
Query: 56  SQLTVRETLS--LAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
            + + RE ++  L     + EI +V       +   F  G     D+ VG+   + +SGG
Sbjct: 106 GR-SFRENIAYGLTRTPTMEEITAVAMESGAHD---FISGFPQGYDTEVGETGNQ-LSGG 160
Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DGHTVICSIHQPRGS 172
           +++ ++LA  LI  P ++  D+ T+ LDA    +V   L +  +    TV+   HQ   S
Sbjct: 161 QRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQL--S 218
Query: 173 VYFKFDDIVLLTEGKLVYAG 192
           +  +   I+ L EG +   G
Sbjct: 219 LAERAHHILFLKEGSVCEQG 238

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 82/173 (47%), Gaps = 17/173 (9%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +G +G GKTT+L +LAG+++ +         + N K   ++  K    ++   +F +L  
Sbjct: 31  LGKNGVGKTTVLKILAGEIIPN-------FGDPNSKVGKDEVLKRFRGKEIYNYFKELYS 83
Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCAD--------SNVGDAKVRGISG 112
            E L +  ++Q  E  S   +   VN +L K+      D        +N+ +     +SG
Sbjct: 84  NE-LKIVHKIQYVEYASKFLKGT-VNEILTKIDERGKKDEVKELLNMTNLWNKDANILSG 141
Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICS 165
           G  +RL +A  L+    V   D+P++ LD  +   + +A+R+L ++ + ++  
Sbjct: 142 GGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVD 194

>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 23/175 (13%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLT 59
           +GP+G+GK+TLL   AG           G ++  G+P  +  A K A  R    + SQ  
Sbjct: 32  VGPNGAGKSTLLARXAGXTSGK------GSIQFAGQPLEAWSATKLALHRA---YLSQ-- 80
Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
            ++T   A  +     L++ + D+    LL  +      D  +G +  + +SGGE +R+ 
Sbjct: 81  -QQTPPFATPVW--HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQ-LSGGEWQRVR 136
Query: 120 LACELI-----ASPS--VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           LA  ++     A+P+  ++  DEP   LD  Q   + + L  L+Q G  ++ S H
Sbjct: 137 LAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSH 191

>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           GP+G GKTTLL  ++  L       L G +  NG P +    K  ++ +E +   +++V 
Sbjct: 42  GPNGIGKTTLLKTISTYLKP-----LKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVE 96
Query: 62  ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA 121
           + L   A L   ++          N ++  L  V   D      K+  +S G  +R+ LA
Sbjct: 97  DYLKAVASLYGVKVNK--------NEIMDALESVEVLDLK---KKLGELSQGTIRRVQLA 145
Query: 122 CELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICS 165
             L+ +  +   D+P   +D     KV++++ ++ ++   VI S
Sbjct: 146 STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 189

>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 55  FSQLTVRETLSLAAELQLPE---------ILSVEERDEYVNSLLFKLGLVSCADSNVGDA 105
           F++L++ E L     L L E         +  +E+R E+    L  +GL     S     
Sbjct: 409 FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEF----LVDVGLEYLTLSRSATT 464
Query: 106 KVRGISGGEKKRLSLACELIAS-PSVIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
               +SGGE +R+ LA ++ +    VIY  DEPT GL     E++++ L++L   G+TVI
Sbjct: 465 ----LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVI 520
Query: 164 CSIHQ 168
              H 
Sbjct: 521 VVEHD 525

>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 23/175 (13%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLT 59
           +GP+G+GK+TLL   AG           G ++  G+P  +  A K A  R    + SQ  
Sbjct: 32  VGPNGAGKSTLLARXAGXTSGK------GSIQFAGQPLEAWSATKLALHRA---YLSQ-- 80
Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
            ++T   A  +     L++ + D+    LL  +      D  +G +  + +SGGE +R+ 
Sbjct: 81  -QQTPPFATPVW--HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQ-LSGGEWQRVR 136
Query: 120 LACELI-----ASPS--VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           LA  ++     A+P+  ++  DEP   LD  Q   + + L  L Q G  ++ S H
Sbjct: 137 LAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSH 191

>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 110 ISGGEKKRLSLACELIASP---SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
           +SGGE +R+ LA EL  S    +V   DEPTTGL     E++   L +L   G+TVI   
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 167 HQ 168
           H+
Sbjct: 791 HK 792

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 18/199 (9%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-----AYVRQEDLFF 55
           +GP+GSGK+T+  +L  Q +  P     G + ++G+P     + +     A V QE L F
Sbjct: 51  VGPNGSGKSTVAALL--QNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLF 105
Query: 56  SQLTVRETLS--LAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
            + + RE ++  L     + EI +V       +   F  G     D+ VG+   + +SGG
Sbjct: 106 GR-SFRENIAYGLTRTPTMEEITAVAMESGAHD---FISGFPQGYDTEVGETGNQ-LSGG 160
Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
           +++ ++LA  LI  P ++  D  T+ LDA    +V   L +  +     +  I Q + S+
Sbjct: 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ-QLSL 219
Query: 174 YFKFDDIVLLTEGKLVYAG 192
             +   I+ L EG +   G
Sbjct: 220 AERAHHILFLKEGSVCEQG 238

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 100/213 (46%), Gaps = 31/213 (14%)
Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +G  G GK++LL+ L  ++       + G + + G          AYV Q+  +    ++
Sbjct: 37  VGQVGCGKSSLLSALLAEMD-----KVEGHVAIKGS--------VAYVPQQ-AWIQNDSL 82
Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCAD-SNVGDAKVRGISGGEKKRLS 119
           RE +    +L+ P   SV +      +LL  L ++   D + +G+  V  +SGG+K+R+S
Sbjct: 83  RENILFGCQLEEPYYRSVIQ----ACALLPDLEILPSGDRTEIGEKGVN-LSGGQKQRVS 137
Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEAL---RQLAQDGHTVICSIHQPRGSVYFK 176
           LA  + ++  +   D+P + +DA   + + E +   + + ++  T I   H    S   +
Sbjct: 138 LARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN-KTRILVTHSM--SYLPQ 194
Query: 177 FDDIVLLTEGKLVYAGP-----ARDEPLAYFSR 204
            D I++++ GK+   G      ARD   A F R
Sbjct: 195 VDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	607
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	2e-28
1sgw_A	214	Putative ABC transporter; structural genomics, P p	4e-28
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	4e-25
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-23
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	8e-21
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	1e-22
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	2e-21
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	3e-21
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	3e-20
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	4e-21
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	1e-20
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	2e-20
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	3e-20
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	5e-20
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-18
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-19
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-19
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	1e-17
1g6h_A	257	High-affinity branched-chain amino acid transport	3e-13
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	2e-12
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	6e-12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-11
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-07
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-04
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	6e-11
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-09
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	9e-11
2ghi_A	260	Transport protein; multidrug resistance protein, M	3e-10
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	2e-09
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	1e-08
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	2e-08
1b0u_A	262	Histidine permease; ABC transporter, transport pro	2e-08
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	5e-08
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	6e-08
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	6e-08
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	9e-08
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	9e-08
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	2e-07
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	2e-07
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	2e-07
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	5e-07
1ji0_A	240	ABC transporter; ATP binding protein, structural g	5e-07
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	6e-07
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	1e-06
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	8e-06
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	9e-06
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	2e-05
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	1e-04
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	4e-04
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	5e-04

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  113 bits (285), Expect = 2e-28
 Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 19/171 (11%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK----FAYVRQEDLFFSQ 57
           GP+G+GKTT L +++  +  S     SG++ V GK    + ++     +Y+ +E   +  
Sbjct: 48  GPNGAGKTTTLRIISTLIKPS-----SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 102

Query: 58  LTVRETLSLAAEL-QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
           +   E L   A            E +E V       GL           +V   S G  +
Sbjct: 103 MQGIEYLRFVAGFYASSS----SEIEEMVERATEIAGL-----GEKIKDRVSTYSKGMVR 153

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           +L +A  L+ +P +   DEPT+GLD   A +V + L+Q +Q+G T++ S H
Sbjct: 154 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  111 bits (279), Expect = 4e-28
 Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 20/188 (10%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           GP+G GKTTLL  ++  L         G +  NG P +    K  ++ +E +   +++V 
Sbjct: 42  GPNGIGKTTLLKTISTYLKPL-----KGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVE 96

Query: 62  ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA 121
           + L   A L       V+     +   L  + ++          K+  +S G  +R+ LA
Sbjct: 97  DYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKK------KLGELSQGTIRRVQLA 145

Query: 122 CELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIV 181
             L+ +  +   D+P   +D     KV++++ ++ ++   VI S  +         D   
Sbjct: 146 STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE----ELSYCDVNE 201

Query: 182 LLTEGKLV 189
            L +    
Sbjct: 202 NLHKYSTK 209

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score =  103 bits (259), Expect = 4e-25
 Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 22/202 (10%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           GP+G+GK+TLL  +AG       +  +G   +    ++  A   AY+ Q+        V 
Sbjct: 33  GPNGAGKSTLLARMAGMTSGKGSIQFAGQ-PLEAWSATKLALHRAYLSQQQTPPFATPVW 91

Query: 62  ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA 121
             L+L    Q  +      R E +N +   L L      +        +SGGE +R+ LA
Sbjct: 92  HYLTLH---QHDK-----TRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLA 138

Query: 122 -------CELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
                   +   +  ++  DEP   LD  Q   + + L  L+Q G  ++ S H    ++ 
Sbjct: 139 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLR 198

Query: 175 FKFDDIVLLTEGKLVYAGPARD 196
                  LL  GK++ +G   +
Sbjct: 199 H-AHRAWLLKGGKMLASGRREE 219

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  103 bits (260), Expect = 2e-23
 Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 11/170 (6%)

Query: 2   GPSGSGKTTLLNVLAGQLMASP-RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFF---SQ 57
           GP+G+GKTT + +LAGQL+ +    + S    +     +     F  ++  ++      Q
Sbjct: 124 GPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ 183

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
               + L  A + ++ E+L   +       ++ +L L      NV D ++  +SGGE +R
Sbjct: 184 YV--DLLPKAVKGKVRELLKKVDEVGKFEEVVKELEL-----ENVLDRELHQLSGGELQR 236

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           +++A  L+      + DEP++ LD  Q  KV   +R+LA +G  V+   H
Sbjct: 237 VAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 95.5 bits (238), Expect = 8e-21
 Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 26/164 (15%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +GP+G GKTT + +LAG    +      G +E +   +        Y  Q      + TV
Sbjct: 388 VGPNGIGKTTFVKMLAGVEEPT-----EGKVEWDLTVA--------YKPQYIKAEYEGTV 434

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
            E LS   ++   ++      + Y   LL  LG++   D NV D     +SGGE +R+++
Sbjct: 435 YELLS---KIDSSKL----NSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAI 482

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVI 163
           A  L+    +   DEP+  LD  Q   V  A+R L +    T +
Sbjct: 483 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 97.3 bits (243), Expect = 1e-22
 Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 25/208 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-------KFAYVRQE--D 52
           G +G+GKTTLLN+L     A+     SG + + GK      Y          +V     +
Sbjct: 54  GLNGAGKTTLLNILNAYEPAT-----SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLE 108

Query: 53  LFFSQLTVRET-LS-LAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
            F     V +  +S     + + + +  E R+E  + LL  +G+ + A   +G      +
Sbjct: 109 KFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGMSAKAQQYIGY-----L 162

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH--TVICSIHQ 168
           S GEK+R+ +A  L+  P V+  DEP  GLD    E ++  L  L+       +I   H 
Sbjct: 163 STGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHF 222

Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD 196
               +   F  I+LL +G+ +  G   D
Sbjct: 223 I-EEITANFSKILLLKDGQSIQQGAVED 249

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 93.4 bits (233), Expect = 2e-21
 Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 27/207 (13%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQ---------E 51
           +G +G GK+TL     G L  S     SG +  + KP          +R+         +
Sbjct: 40  LGGNGVGKSTLFQNFNGILKPS-----SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPD 94

Query: 52  DLFFSQLTVRETLSLAAE-LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
           +  FS  +V + +S  A  ++LPE    +E  + V++ L + G+    D          +
Sbjct: 95  NQLFSA-SVYQDVSFGAVNMKLPE----DEIRKRVDNALKRTGIEHLKDKPTHC-----L 144

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQP 169
           S G+KKR+++A  L+  P V+  DEPT GLD     ++M+ L ++ ++ G T+I + H  
Sbjct: 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI 204

Query: 170 RGSVYFKFDDIVLLTEGKLVYAGPARD 196
              V    D++ ++ EG+++  G  ++
Sbjct: 205 D-IVPLYCDNVFVMKEGRVILQGNPKE 230

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 96.6 bits (241), Expect = 3e-21
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 33/220 (15%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFF------ 55
           G +G GKTT+L +LAG+++ +         + N K   ++  K    R ++++       
Sbjct: 32  GKNGVGKTTVLKILAGEIIPN-------FGDPNSKVGKDEVLK--RFRGKEIYNYFKELY 82

Query: 56  -SQLTVR------ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
            ++L +       E  S   +  + EIL+  +     + +   L +      N+ +    
Sbjct: 83  SNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMT-----NLWNKDAN 137

Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
            +SGG  +RL +A  L+    V   D+P++ LD  +   + +A+R+L +    VI   H 
Sbjct: 138 ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDH- 195

Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYT 208
               V     D++ +  G+    G        Y +R G  
Sbjct: 196 -DLIVLDYLTDLIHIIYGESSVYGRVSKS---YAARVGIN 231

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 93.2 bits (232), Expect = 3e-20
 Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 23/163 (14%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +GP+G GKTT   +L G++ A       G +    +  S K        Q        TV
Sbjct: 300 LGPNGIGKTTFARILVGEITAD-----EGSVTPEKQILSYK-------PQRIFPNYDGTV 347

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           ++ L  A++  L           +   +  +L L    +SNV D     +SGGE ++L +
Sbjct: 348 QQYLENASKDAL------STSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYI 396

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           A  L     +   D+P++ LD  +   V +A++++ ++   V 
Sbjct: 397 AATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 91.9 bits (229), Expect = 4e-21
 Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 24/199 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +G +G GK+TLL++L G     P     G +EV             +V Q        +V
Sbjct: 37  LGQNGCGKSTLLDLLLGIH--RPI---QGKIEV--------YQSIGFVPQFFSSPFAYSV 83

Query: 61  RETLSL--AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
            + + +  +  +         +  +     L  L L   A           +SGG+++ +
Sbjct: 84  LDIVLMGRSTHINTFAKPKSHDY-QVAMQALDYLNLTHLAKREFTS-----LSGGQRQLI 137

Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKF 177
            +A  + +   +I  DEPT+ LD    + V+  L  LAQ    TV+ + HQP   V    
Sbjct: 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAI-A 196

Query: 178 DDIVLLTEGKLVYAGPARD 196
           +  +LL   +    G  R+
Sbjct: 197 NKTLLL-NKQNFKFGETRN 214

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 90.7 bits (226), Expect = 1e-20
 Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 18/199 (9%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY--KFAYVRQ--EDLFFSQ 57
           G +GSGK+TLL ++AG +  +     SG +  +G+               Q  ED FF++
Sbjct: 40  GNTGSGKSTLLQIVAGLIEPT-----SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE 94

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
             V + ++ A +   P+     +    V   +  +GL      +  D     +SGGEK+R
Sbjct: 95  -RVFDEVAFAVKNFYPD----RDPVPLVKKAMEFVGL---DFDSFKDRVPFFLSGGEKRR 146

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
           +++A  ++  P ++  DEP  GLD      ++  + +    G TVI   H    +V    
Sbjct: 147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHV 205

Query: 178 DDIVLLTEGKLVYAGPARD 196
           D +V+L +GK V+ G   +
Sbjct: 206 DRVVVLEKGKKVFDGTRME 224

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 89.1 bits (222), Expect = 2e-20
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 28/181 (15%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKFAYVRQEDLFF---- 55
           +G SGSGK+TLL +L   L+ +P     G + + GK        + + +R   L F    
Sbjct: 36  IGASGSGKSTLLYILG--LLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQF 90

Query: 56  ----SQLTVRETLSLAAELQLPEI---LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
                +LT  E +       +P +      +E  E    LL +LGL      +    K  
Sbjct: 91  HYLIPELTALENV------IVPMLKMGKPKKEAKERGEYLLSELGL-----GDKLSRKPY 139

Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
            +SGGE++R+++A  L   P +++ADEPT  LD+   ++VM+   ++ + G +++   H+
Sbjct: 140 ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199

Query: 169 P 169
            
Sbjct: 200 R 200

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 88.8 bits (221), Expect = 3e-20
 Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 19/179 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKFAYVRQEDLFF---- 55
           MGPSGSGK+T+LN++    +  P     G + ++   +++    +   +R++ + F    
Sbjct: 37  MGPSGSGKSTMLNIIG--CLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91

Query: 56  ----SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
                 LT  E + L    +    +S EER +     L    L    +    + K   +S
Sbjct: 92  FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL----EERFANHKPNQLS 147

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIHQP 169
           GG+++R+++A  L  +P +I AD+PT  LD+   EK+M+ L++L  +DG TV+   H  
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 92.7 bits (231), Expect = 5e-20
 Identities = 42/173 (24%), Positives = 88/173 (50%), Gaps = 15/173 (8%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRL---HLSGLLEVNGKPSSNKAYKFAYVRQEDLFF-- 55
           +GP+G+GK+T + +LAGQL+  P L   + S    +     +     F  ++  ++    
Sbjct: 53  VGPNGTGKSTAVKILAGQLI--PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVV 110

Query: 56  -SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
             Q    + +  A + ++ E+L   +    +  ++  L L      NV + +++ +SGGE
Sbjct: 111 KPQYV--DLIPKAVKGKVIELLKKADETGKLEEVVKALEL-----ENVLEREIQHLSGGE 163

Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
            +R+++A  L+ + +  + DEP++ LD  Q      A+R+L+++G +V+   H
Sbjct: 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 88.1 bits (219), Expect = 1e-18
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 26/164 (15%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +GP+G GKTT + +LAG    +      G +E +   +    YK  Y++ +     + TV
Sbjct: 318 VGPNGIGKTTFVKMLAGVEEPT-----EGKIEWDLTVA----YKPQYIKAD----YEGTV 364

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
            E L   +++   ++      + Y   LL  LG++   D  V +     +SGGE +R+++
Sbjct: 365 YELL---SKIDASKL----NSNFYKTELLKPLGIIDLYDREVNE-----LSGGELQRVAI 412

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVI 163
           A  L+    +   DEP+  LD  Q   V  A+R L  ++  T +
Sbjct: 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 92.0 bits (229), Expect = 1e-19
 Identities = 41/178 (23%), Positives = 66/178 (37%), Gaps = 20/178 (11%)

Query: 2   GPSGSGKTTLLNVLAGQL-MASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDL----- 53
           G +G GK+T L +LAG+      R       +   K          F  + ++D+     
Sbjct: 110 GTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIK 169

Query: 54  ----FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRG 109
                     ++  +    EL     L +E+  E V   +  L L      NV    +  
Sbjct: 170 PQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQL-----ENVLKRDIEK 221

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           +SGGE +R ++    +    V   DEP++ LD  Q     + +R L      VIC  H
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 32/167 (19%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS---NKAYKFAYVRQEDLFFSQ 57
           MG +G+GKTTL+ +LAG L                KP           +   Q+      
Sbjct: 384 MGENGTGKTTLIKLLAGAL----------------KPDEGQDIPKLNVSMKPQKIAPKFP 427

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
            TVR+      +    + L+ + + +    ++  L +    D  V       +SGGE +R
Sbjct: 428 GTVRQLF---FKKIRGQFLNPQFQTD----VVKPLRIDDIIDQEVQH-----LSGGELQR 475

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVI 163
           +++   L     +   DEP+  LD+ Q     + +R+       T  
Sbjct: 476 VAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 21/197 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFFSQLT 59
           +GP+GSGKTTLL  ++G L+       SG + +NG           Y     + +   +T
Sbjct: 36  LGPNGSGKTTLLRAISG-LLPY-----SGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVT 89

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           V + + L       E+  ++   +    +L  L L       +   K+  +S G+   + 
Sbjct: 90  VNDIVYLY-----EELKGLDR--DLFLEMLKALKL----GEEILRRKLYKLSAGQSVLVR 138

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD 179
            +  L + P ++  DEP   +DA +   +   +++    G   I   H+      +K   
Sbjct: 139 TSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTHELDMLNLYKEYK 195

Query: 180 IVLLTEGKLVYAGPARD 196
              L   +L       +
Sbjct: 196 AYFLVGNRLQGPISVSE 212

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 69.1 bits (170), Expect = 3e-13
 Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 26/178 (14%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKFAY---VR--QEDLFF 55
           GP+GSGK+TL+NV+ G L A       G +    K  +N +  +  +   VR  Q     
Sbjct: 40  GPNGSGKSTLINVITGFLKAD-----EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 94

Query: 56  SQLTVRETLSLAAELQLPEILSV--------EERD--EYVNSLLFKLGLVSCADSNVGDA 105
            ++TV E L +         L+         +E +  E    +L  L L    D   G+ 
Sbjct: 95  KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE- 153

Query: 106 KVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
               +SGG+ K + +   L+ +P +I  DEP  G+    A  +   + +L   G T +
Sbjct: 154 ----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFL 207

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 33/181 (18%)

Query: 1   MGPSGSGKTTLL---NVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE------ 51
           +GPSGSGK+T L   N+L             G + ++G     K      VR+E      
Sbjct: 56  IGPSGSGKSTFLRCLNLL--------EDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQ 107

Query: 52  --DLFFSQLTVRETLSLAAELQLPEIL---SVEERDEYVNSLLFKLGLVSCADSNVGDAK 106
             +L F  +TV   ++LA     P  +     E+ +     LL K+GL   A      A 
Sbjct: 108 RFNL-FPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKDKA-----HAY 156

Query: 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
              +SGG+ +R+++A  L   P ++  DEPT+ LD     +V+  ++QLA +G T++   
Sbjct: 157 PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVT 216

Query: 167 H 167
           H
Sbjct: 217 H 217

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 64.8 bits (159), Expect = 6e-12
 Identities = 53/206 (25%), Positives = 100/206 (48%), Gaps = 36/206 (17%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKPSSNKAYK-----FAYVRQEDLF 54
           GPSG GK+T+ ++L        R +   +G + ++G+P  N + +       +V Q+   
Sbjct: 35  GPSGGGKSTIFSLL-------ERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAI 87

Query: 55  FSQLTVRETLSLAAELQLP--EILSVEER---DEYVNSLLFKLGLVSCADSNVGDAKVRG 109
            +  T+RE L+   E      ++  V +      +V ++     L    ++ VG+   RG
Sbjct: 88  MAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM--PDQL----NTEVGE---RG 137

Query: 110 I--SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK-VMEALRQLAQDGHTVICSI 166
           +  SGG+++RL++A   + +P ++  DE T  LD+ ++E  V +AL  L + G T +   
Sbjct: 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDS-ESESMVQKALDSLMK-GRTTLVIA 195

Query: 167 HQPRGSVYFKFDDIVLLTEGKLVYAG 192
           H  R S     D I  + +G++  +G
Sbjct: 196 H--RLSTIVDADKIYFIEKGQITGSG 219

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 66.6 bits (162), Expect = 1e-11
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 29/141 (20%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFF-SQLTV 60
           GP+G GK+TL+  +A               +V+G P+  +  +  YV  +     S  +V
Sbjct: 468 GPNGCGKSTLMRAIANG-------------QVDGFPTQEEC-RTVYVEHDIDGTHSDTSV 513

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
            + +  +               E +   L + G        +    +  +SGG K +L+L
Sbjct: 514 LDFVFESGV----------GTKEAIKDKLIEFGF----TDEMIAMPISALSGGWKMKLAL 559

Query: 121 ACELIASPSVIYADEPTTGLD 141
           A  ++ +  ++  DEPT  LD
Sbjct: 560 ARAVLRNADILLLDEPTNHLD 580

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 51.6 bits (123), Expect = 7e-07
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 13/115 (11%)

Query: 79  EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT 138
               + +      LGL       V  +++RG+SGG+K +L LA      P +I  DEPT 
Sbjct: 874 PLTRKEIEEHCSMLGL---DPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 930

Query: 139 GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF---KFDDIVLLTEGKLVY 190
            LD      + +AL++       VI   H    S  F     +++  + +G++  
Sbjct: 931 YLDRDSLGALSKALKEF---EGGVIIITH----SAEFTKNLTEEVWAVKDGRMTP 978

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 25/151 (16%), Positives = 55/151 (36%), Gaps = 19/151 (12%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           GP+G+GK+TL+NVL G+L+ +           +G+  +++  + AY++Q      +  + 
Sbjct: 706 GPNGAGKSTLINVLTGELLPT-----------SGEVYTHENCRIAYIKQHAFAHIESHLD 754

Query: 62  ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA 121
           +T S   + +       E  D     +          +      K+  I G  ++   + 
Sbjct: 755 KTPSEYIQWRFQTGEDRETMDRANRQINE--------NDAEAMNKIFKIEGTPRRIAGIH 806

Query: 122 CELIASPSVIYADEPTTGLDAFQAEKVMEAL 152
                  +  Y      G +     +    +
Sbjct: 807 SRRKFKNTYEYECSFLLGENIGMKSERWVPM 837

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 64.7 bits (158), Expect = 6e-11
 Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 25/201 (12%)

Query: 2    GPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKPSSN---KAY--KFAYVRQEDLF 54
            G SG GK+T++ +L        R +  ++G + ++GK       +    +   V QE + 
Sbjct: 1066 GSSGCGKSTVVQLLE-------RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPIL 1118

Query: 55   FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRG--ISG 112
            F   ++ E ++     ++     +    +  N   F   L    ++ VGD   +G  +SG
Sbjct: 1119 F-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD---KGTQLSG 1174

Query: 113  GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK-VMEALRQLAQDGHTVICSIHQPRG 171
            G+K+R+++A  L+  P ++  DE T+ LD  ++EK V EAL +  + G T I   H  R 
Sbjct: 1175 GQKQRIAIARALVRQPHILLLDEATSALDT-ESEKVVQEALDKARE-GRTCIVIAH--RL 1230

Query: 172  SVYFKFDDIVLLTEGKLVYAG 192
            S     D IV++  GK+   G
Sbjct: 1231 STIQNADLIVVIQNGKVKEHG 1251

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 71/311 (22%), Positives = 124/311 (39%), Gaps = 47/311 (15%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKP--SSNKAY---KFAYVRQEDLF 54
           G SG GK+T + ++        RL+  L G++ ++G+   + N  Y       V QE + 
Sbjct: 423 GNSGCGKSTTVQLM-------QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVL 475

Query: 55  FSQLTVRETLSLAAE-LQLPEILSVEER---DEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
           F+  T+ E +    E + + EI    +     +++  L  +       D+ VG+   RG 
Sbjct: 476 FAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF------DTLVGE---RGA 525

Query: 111 --SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK-VMEALRQLAQDGHTVICSIH 167
             SGG+K+R+++A  L+ +P ++  DE T+ LD  ++E  V  AL +  + G T I   H
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDT-ESEAVVQAALDKARE-GRTTIVIAH 583

Query: 168 QPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLA----YFS-----RFGYTCPDHVNPAEF 218
             R S     D I     G +V  G   DE +     YF        G          + 
Sbjct: 584 --RLSTVRNADVIAGFDGGVIVEQGN-HDELMREKGIYFKLVMTQTAGNEIELGNEACKS 640

Query: 219 LADLISVDYSSAESVYLSQKRIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVK 278
             ++ ++D SS +S     +R  +              ++     E    +      I+K
Sbjct: 641 KDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASF--WRILK 698

Query: 279 KKGGWWRQFWL 289
                W  F +
Sbjct: 699 LNSTEWPYFVV 709

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 61.3 bits (150), Expect = 9e-11
 Identities = 50/201 (24%), Positives = 98/201 (48%), Gaps = 27/201 (13%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKPSSNKAYKF-----AYVRQEDLF 54
           G SGSGK+TL  ++        R +   +G + ++G   +     +       V Q+++ 
Sbjct: 42  GRSGSGKSTLTKLI-------QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVL 94

Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI--SG 112
            ++ ++ + +SLA      E   V    +   +  F   L    ++ VG+   +G   SG
Sbjct: 95  LNR-SIIDNISLANPGMSVE--KVIYAAKLAGAHDFISELREGYNTIVGE---QGAGLSG 148

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK-VMEALRQLAQDGHTVICSIHQPRG 171
           G+++R+++A  L+ +P ++  DE T+ LD  ++E  +M  + ++ + G TVI   H  R 
Sbjct: 149 GQRQRIAIARALVNNPKILIFDEATSALDY-ESEHVIMRNMHKICK-GRTVIIIAH--RL 204

Query: 172 SVYFKFDDIVLLTEGKLVYAG 192
           S     D I+++ +GK+V  G
Sbjct: 205 STVKNADRIIVMEKGKIVEQG 225

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 60.3 bits (147), Expect = 3e-10
 Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 36/205 (17%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLH-LSGLLEVNGKPSSNKAYKFAYVR-------QEDL 53
           G +GSGK+T+  +L        R +   G +++ GK      Y    +R       Q+ +
Sbjct: 53  GHTGSGKSTIAKLL-------YRFYDAEGDIKIGGKNV--NKYNRNSIRSIIGIVPQDTI 103

Query: 54  FFSQLTVRETLSL----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRG 109
            F++ T++  +      A + ++ +     +  +++ +L  K       D+ VG+   +G
Sbjct: 104 LFNE-TIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKW------DTIVGN---KG 153

Query: 110 I--SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
           +  SGGE++R+++A  L+  P ++  DE T+ LD+       +A+  L +   T+I   H
Sbjct: 154 MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAH 212

Query: 168 QPRGSVYFKFDDIVLLTEGKLVYAG 192
             R S     + I+LL +GK+V  G
Sbjct: 213 --RLSTISSAESIILLNKGKIVEKG 235

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 19/166 (11%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYK--FAYVRQEDLFFSQL 58
           GP+G+GK+  L ++AG +         G + +NG   +     +    +V Q+   F  L
Sbjct: 31  GPTGAGKSVFLELIAGIVKPD-----RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
           +V    ++A  L+    +   ERD  V  +  KLG+     +++ D K   +SGGE++R+
Sbjct: 86  SVYR--NIAYGLR---NVERVERDRRVREMAEKLGI-----AHLLDRKPARLSGGERQRV 135

Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVI 163
           +LA  L+  P ++  DEP + +D      +ME LR + ++    ++
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 7e-10
 Identities = 45/308 (14%), Positives = 80/308 (25%), Gaps = 88/308 (28%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY--KFAYVRQEDLFFSQL 58
           +   GSGKT     +A  +  S ++               K +          +     L
Sbjct: 158 VL--GSGKT----WVALDVCLSYKVQCK---------MDFKIFWLNLKNCNSPETVLEML 202

Query: 59  -----TVRETLSLAAELQLPEILSVEERDE----------YVNSLL-------------F 90
                 +    +  ++      L +               Y N LL             F
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 91  KLG---LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147
            L    L++     V D     +S      +SL             D  +  L   + + 
Sbjct: 263 NLSCKILLTTRFKQVTDF----LSAATTTHISL-------------DHHSMTLTPDEVKS 305

Query: 148 V--------MEALRQLAQDGHTVICSI------HQPRGSVYFK---FDDIVLLTEGKLVY 190
           +         + L +     +    SI              +K    D +  + E  L  
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 191 AGPARDEPLAYFSRFGYTCPDHVN-PAEFLADL-ISVDYSSAESVYLSQKRIDSLAESFL 248
             P   E    F R     P   + P   L+ +   V  S    V +++    SL E   
Sbjct: 366 LEP--AEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSLVEKQP 421

Query: 249 QRSSTILY 256
           + S+  + 
Sbjct: 422 KESTISIP 429

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 90/638 (14%), Positives = 160/638 (25%), Gaps = 232/638 (36%)

Query: 26  HLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYV 85
           H+    E        K      V ++  F      ++   +        ILS EE D  +
Sbjct: 6   HMD--FETGEHQYQYK--DILSVFEDA-FVDNFDCKDVQDM-----PKSILSKEEIDHII 55

Query: 86  NS--------LLFKLGLVSCADSNVGDAKVRGISGGEKK-------RLSLACELIASPSV 130
            S         LF   L+S  +  V       +    +         +       +  + 
Sbjct: 56  MSKDAVSGTLRLFWT-LLSKQEEMVQKF----VEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 131 IYAD---------EPTTGLDAFQAEKVM---EALRQLAQDGHTVICSIHQPRGSVYFKFD 178
           +Y +         +     +  + +  +   +AL +L +    V+  I    GS      
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVL--IDGVLGS------ 161

Query: 179 DIVLLTEGKLVYAGPA-RDEPLAYFSRFG--------YTCPDHV-NPAEFLADLISVDYS 228
                  GK   A        +     F            P+ V    + L   I  +++
Sbjct: 162 -------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 229 SAESVYLSQK-RIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQF 287
           S      + K RI S+ ++ L+R         L+  + Y+   L                
Sbjct: 215 SRSDHSSNIKLRIHSI-QAELRR---------LLKSKPYENC-L---------------- 247

Query: 288 WLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINT 347
            L+L             N         +A  F          +  +  R         + 
Sbjct: 248 -LVLLNVQ---------NA-----KAWNA--FN------LSCKILLTTR----FKQVTDF 280

Query: 348 AMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLI----AEIPVGAA--FPL---M 398
             AA T  + +      +   E           LL K +     ++P       P    +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDE------VKS--LLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 399 FGAVLYPMARLHP-TLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTV 457
               +    R    T   +      V  +    + +  ++  + P     M         
Sbjct: 333 IAESI----RDGLATWDNWKH----VNCDKL-TTIIESSLNVLEPAEYRKM--------- 374

Query: 458 FIVFGGYYVNADNTPIIFR---WIPRVSLIRWAFQGLCINEFSGLQFDHQHSFDIQTGEQ 514
           F               +F     IP                                   
Sbjct: 375 FDRLS-----------VFPPSAHIP---------------------------------TI 390

Query: 515 ALERLSFGGSRISDTVMAQSRILLFWYCTTYLLLEKKKPKYQQLELPNPEQTQQKIQLEP 574
            L  + F   +    V+             Y L+E K+PK   + +P+       I LE 
Sbjct: 391 LLSLIWFDVIKSDVMVVVNK-------LHKYSLVE-KQPKESTISIPS-------IYLE- 434

Query: 575 LETDLPPEKE---------QIKSTRQVESESPP-LDMY 602
           L+  L  E            I  T   +   PP LD Y
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 32/205 (15%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKPSS--NKAY---KFAYVRQEDLF 54
           GP+GSGK+T+  +L         L+    G + ++G+P    +  Y   + A V QE L 
Sbjct: 52  GPNGSGKSTVAALL-------QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLL 104

Query: 55  FSQLTVRETLSLAAELQLPEILSVEERDE---YVNSLLFKLGLVSCADSNVGDAKVRGI- 110
           F + + RE ++      L    ++EE         +  F  G     D+ VG+    G  
Sbjct: 105 FGR-SFRENIAYG----LTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE---TGNQ 156

Query: 111 -SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK-VMEALRQLAQD-GHTVICSIH 167
            SGG+++ ++LA  LI  P ++  D  T+ LDA   +  V   L +  +    TV+    
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDA-GNQLRVQRLLYESPEWASRTVLLITQ 215

Query: 168 QPRGSVYFKFDDIVLLTEGKLVYAG 192
             + S+  +   I+ L EG +   G
Sbjct: 216 --QLSLAERAHHILFLKEGSVCEQG 238

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 41/205 (20%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGK-------PSSNKAYKFAYVRQED 52
           GPSG+GK+T+L +L        R +   SG + ++G+        S         V Q+ 
Sbjct: 87  GPSGAGKSTILRLL-------FRFYDISSGCIRIDGQDISQVTQASLRSH--IGVVPQDT 137

Query: 53  LFFSQLTVRETLS---LAAELQLPEILSVEER---DEYVNSLLFKLGLVSCADSNVGDAK 106
           + F+  T+ + +    + A     E+ +  +     + + +  F  G      + VG+  
Sbjct: 138 VLFND-TIADNIRYGRVTAGND--EVEAAAQAAGIHDAIMA--FPEGY----RTQVGE-- 186

Query: 107 VRG--ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVIC 164
            RG  +SGGEK+R+++A  ++ +P +I  DE T+ LD      +  +L ++     T I 
Sbjct: 187 -RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIV 244

Query: 165 SIHQPRGSVYFKFDDIVLLTEGKLV 189
             H  R S     D I+++ +G +V
Sbjct: 245 VAH--RLSTVVNADQILVIKDGCIV 267

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 27/171 (15%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYK--FAYVRQEDLFFSQL 58
           GPSGSGKTT+L ++AG    +      G + + GK  ++    K     V Q    F  +
Sbjct: 48  GPSGSGKTTILRLIAGLERPT-----KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHM 102

Query: 59  TVRETLSLAAELQ-LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           TV + +S     + +P+    +E D  V  LL  + L      +  +     +SGG+++R
Sbjct: 103 TVYDNVSFGLREKRVPK----DEMDARVRELLRFMRL-----ESYANRFPHELSGGQQQR 153

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEA----LRQLAQD-GHTVI 163
           ++LA  L   P V+  DEP   +D     ++       +RQ+  + G T +
Sbjct: 154 VALARALAPRPQVLLFDEPFAAIDT----QIRRELRTFVRQVHDEMGVTSV 200

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 46/221 (20%)

Query: 2   GPSGSGKTTLL---NVL----AGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE--- 51
           G SGSGK+T L   N L     G ++ + +  ++ + + +G+       +   +R     
Sbjct: 39  GSSGSGKSTFLRCINFLEKPSEGAIIVNGQN-INLVRDKDGQLKVADKNQLRLLRTRLTM 97

Query: 52  -----DLFFSQLTVRETLSLAAELQLPEI---LSVEERDEYVNSLLFKLGLVSCADSNVG 103
                +L +S +TV E +  A     P     LS  +  E     L K+G+   A     
Sbjct: 98  VFQHFNL-WSHMTVLENVMEA-----PIQVLGLSKHDARERALKYLAKVGIDERAQ---- 147

Query: 104 DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL---RQLAQDGH 160
                 +SGG+++R+S+A  L   P V+  DEPT+ LD    E V E L   +QLA++G 
Sbjct: 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD---PELVGEVLRIMQQLAEEGK 204

Query: 161 TVICSIHQPRGSVYFKF-----DDIVLLTEGKLVYAGPARD 196
           T++   H+        F       ++ L +GK+   G    
Sbjct: 205 TMVVVTHE------MGFARHVSSHVIFLHQGKIEEEGDPEQ 239

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 111 SGGEKKRLSLACEL-----IASPSVIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           SGGE+  L LA  L     +A    +   DEPT  LD  +  K++  + +  +    VI
Sbjct: 59  SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 54.9 bits (133), Expect = 6e-08
 Identities = 54/203 (26%), Positives = 101/203 (49%), Gaps = 36/203 (17%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKPSSNKAYK-------FAYVRQED 52
           G SGSGK+T+ N+         R +   SG + ++G     + YK       FA V Q  
Sbjct: 376 GRSGSGKSTIANLF-------TRFYDVDSGSICLDGHDV--RDYKLTNLRRHFALVSQNV 426

Query: 53  LFFSQLTVRETLSLAAELQLP--EILSVEER---DEYVNSLLFKLGLVSCADSNVGDAKV 107
             F+  T+   ++ AAE +    +I     +    E++ ++    GL    D+ +G+   
Sbjct: 427 HLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENM--PQGL----DTVIGENGT 479

Query: 108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK-VMEALRQLAQDGHTVICSI 166
             +SGG+++R+++A  L+    V+  DE T+ LD  ++E+ +  AL +L +   TV+   
Sbjct: 480 S-LSGGQRQRVAIARALLRDAPVLILDEATSALDT-ESERAIQAALDELQK-NKTVLVIA 536

Query: 167 HQPRGSVYFKFDDIVLLTEGKLV 189
           H  R S   + D+I+++ EG+++
Sbjct: 537 H--RLSTIEQADEILVVDEGEII 557

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 46/210 (21%), Positives = 79/210 (37%), Gaps = 58/210 (27%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           G +G+GKT+LL ++ G+L         G ++ +G        + ++  Q        T++
Sbjct: 41  GSTGAGKTSLLMMIMGEL---EP--SEGKIKHSG--------RISFCSQFSWIMPG-TIK 86

Query: 62  ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCA---DSNV---GDAKV---RGI-- 110
           E            I+     DEY     ++  + +C    D +     D  V    GI  
Sbjct: 87  EN-----------IIFGVSYDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 131

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDA------FQAEKVMEALRQLAQDGHTVIC 164
           SGG++ R+SLA  +     +   D P   LD       F+   V + +        T I 
Sbjct: 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE-SCVCKLMA-----NKTRIL 185

Query: 165 SIHQPRGSVYF--KFDDIVLLTEGKLVYAG 192
              +    +    K D I++L EG   + G
Sbjct: 186 VTSK----MEHLKKADKILILHEGSSYFYG 211

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 44/209 (21%), Positives = 78/209 (37%), Gaps = 55/209 (26%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           G +G+GKT+LL ++ G+L         G ++ +G        + ++  Q        T++
Sbjct: 71  GSTGAGKTSLLMMIMGEL---EP--SEGKIKHSG--------RISFCSQNSWIMPG-TIK 116

Query: 62  ETLSLAAELQLPEILSVE-ERDEYVN-----SLLFKLGLVSCAD-SNVGDAKVRGI--SG 112
           E            I+ V  +   Y +      L   +   +  D   +G+    GI  SG
Sbjct: 117 EN-----------IIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE---GGITLSG 162

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDA------FQAEKVMEALRQLAQDGHTVICSI 166
           G++ R+SLA  +     +   D P   LD       F+   V + +        T I   
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE-SCVCKLMA-----NKTRILVT 216

Query: 167 HQPRGSVYF--KFDDIVLLTEGKLVYAGP 193
            +    +    K D I++L EG   + G 
Sbjct: 217 SK----MEHLKKADKILILHEGSSYFYGT 241

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 54.1 bits (131), Expect = 9e-08
 Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 44/207 (21%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKPSSNKAYK-------FAYVRQED 52
           G SGSGK+T+ +++        R +    G + ++G     + Y         A V Q  
Sbjct: 376 GRSGSGKSTIASLI-------TRFYDIDEGHILMDGHDL--REYTLASLRNQVALVSQNV 426

Query: 53  LFFSQLTVRETLSLAAELQLPEILSVEE---------RDEYVNSLLFKLGLVSCADSNVG 103
             F+  TV   ++ A      E  S E+           +++N +    GL    D+ +G
Sbjct: 427 HLFND-TVANNIAYAR----TEEYSREQIEEAARMAYAMDFINKM--DNGL----DTIIG 475

Query: 104 DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK-VMEALRQLAQDGHTV 162
           +  V  +SGG+++R+++A  L+    ++  DE T+ LD  ++E+ +  AL +L +   T 
Sbjct: 476 ENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDT-ESERAIQAALDELQK-NRTS 532

Query: 163 ICSIHQPRGSVYFKFDDIVLLTEGKLV 189
           +   H  R S   + D+IV++ +G +V
Sbjct: 533 LVIAH--RLSTIEQADEIVVVEDGIIV 557

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 37/207 (17%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKPSSNKAY-------KFAYVRQE 51
           +G +GSGK+TL+N++       PRL     G +EV+      +           + V QE
Sbjct: 375 LGETGSGKSTLMNLI-------PRLIDPERGRVEVDELDV--RTVKLKDLRGHISAVPQE 425

Query: 52  DLFFSQLTVRETLSL----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKV 107
            + FS  T++E L      A + ++ E   + +  +++ S     G     DS V     
Sbjct: 426 TVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIIS--LPEGY----DSRVER--- 475

Query: 108 RG--ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICS 165
            G   SGG+K+RLS+A  L+  P V+  D+ T+ +D    +++++ L++  +   T I  
Sbjct: 476 GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFI-- 533

Query: 166 IHQPRGSVYFKFDDIVLLTEGKLVYAG 192
           I Q +       D I++L EGK+   G
Sbjct: 534 ITQ-KIPTALLADKILVLHEGKVAGFG 559

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 56/210 (26%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
           G  G GK++LL+ L  ++    +  + G + + G          AYV Q+    +  ++R
Sbjct: 38  GQVGCGKSSLLSALLAEM---DK--VEGHVAIKG--------SVAYVPQQAWIQND-SLR 83

Query: 62  ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCA---DSNV---GDAKV---RGI-- 110
           E            IL   + +E      ++  + +CA   D  +   GD      +G+  
Sbjct: 84  EN-----------ILFGCQLEEP----YYRSVIQACALLPDLEILPSGDRTEIGEKGVNL 128

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDA------FQAEKVMEALRQLAQDGHTVIC 164
           SGG+K+R+SLA  + ++  +   D+P + +DA      F  E V+     L     T I 
Sbjct: 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF--ENVIGPKGMLK--NKTRIL 184

Query: 165 SIHQPRGSVYF--KFDDIVLLTEGKLVYAG 192
             H     + +  + D I++++ GK+   G
Sbjct: 185 VTHS----MSYLPQVDVIIVMSGGKISEMG 210

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 51.2 bits (122), Expect = 5e-07
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 111 SGGEKKRLSLACEL------IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVIC 164
           SGGE+  L LA  L          S++  DEPT  LD  +  K++  + +  +    VI 
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309

Query: 165 SIHQP 169
             H  
Sbjct: 310 VSHDE 314

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 50.1 bits (121), Expect = 5e-07
 Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 31/173 (17%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYK-----FAYVRQEDLFF 55
           G +G+GKTT L+ +AG + A       G +  NG+  +N  A+       A V +    F
Sbjct: 39  GANGAGKTTTLSAIAGLVRAQ-----KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIF 93

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR------G 109
            +LTV E L + A     +   ++   E++ SL  +L             K R       
Sbjct: 94  PELTVYENLMMGA-YNRKDKEGIKRDLEWIFSLFPRL-------------KERLKQLGGT 139

Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTV 162
           +SGGE++ L++   L++ P ++  DEP+ GL      +V E ++++ Q+G T+
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI 192

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 51.0 bits (123), Expect = 6e-07
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 30/171 (17%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYK--FAYVRQEDLFFSQL 58
           GP+G+GKT  L ++AG  +       SG + ++GK  ++    K   A+V Q    F  +
Sbjct: 33  GPTGAGKTLFLELIAGFHVPD-----SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87

Query: 59  TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
            V++  +L   +++ +I    +  + V      L +      ++ D     +SGGE++R+
Sbjct: 88  NVKK--NLEFGMRMKKI----KDPKRVLDTARDLKI-----EHLLDRNPLTLSGGEQQRV 136

Query: 119 SLACELIASPSVIYADEPTTGLDA-----FQAEKVMEALRQLAQD-GHTVI 163
           +LA  L+ +P ++  DEP + LD       +       L  L +    TV+
Sbjct: 137 ALARALVTNPKILLLDEPLSALDPRTQENAREM-----LSVLHKKNKLTVL 182

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 37/178 (20%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYK--FAYVRQEDLF 54
           G SG GKTTLL  LAG          SG + ++GK   +K       +    Y+ QE + 
Sbjct: 37  GASGCGKTTLLRCLAGFEQPD-----SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVL 91

Query: 55  FSQLTVRET----LSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
           F  LTV       L               +  + + ++L   G+     S +       +
Sbjct: 92  FPHLTVYRNIAYGLGNGK-------GRTAQERQRIEAMLELTGI-----SELAGRYPHEL 139

Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ-----LAQDGHTVI 163
           SGG+++R +LA  L   P +I  DEP + LD     ++   +R+     L  +G + +
Sbjct: 140 SGGQQQRAALARALAPDPELILLDEPFSALDE----QLRRQIREDMIAALRANGKSAV 193

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 49/207 (23%), Positives = 96/207 (46%), Gaps = 27/207 (13%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKFAYVRQE-------- 51
           +G SG+GK+TL+  +   L+  P     G + V+G+  +     +    R++        
Sbjct: 60  IGASGAGKSTLIRCV--NLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHF 114

Query: 52  DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
           +L  S  TV   ++L  EL        +E    V  LL  +GL      +  D+    +S
Sbjct: 115 NL-LSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGL-----GDKHDSYPSNLS 165

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPR 170
           GG+K+R+++A  L ++P V+  D+ T+ LD      ++E L+ + +  G T++   H+  
Sbjct: 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM- 224

Query: 171 GSVYFK-FDDIVLLTEGKLVYAGPARD 196
             V  +  D + +++ G+L+      +
Sbjct: 225 -DVVKRICDCVAVISNGELIEQDTVSE 250

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 47.6 bits (114), Expect = 9e-06
 Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 41/205 (20%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKPSSNKAYK-----FAYVRQEDLF 54
           G SG GK+TL+N++       PR +   SG + ++G    +            V+Q+++ 
Sbjct: 374 GMSGGGKSTLINLI-------PRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL 426

Query: 55  FSQLTVRETLSL----AAELQLPEILSVEER---DEYVNSLLFKLGLVSCADSNVGDAKV 107
           FS  TV+E + L    A +    E++   +     +++ +L    G     D+ VG+   
Sbjct: 427 FSD-TVKENILLGRPTATD---EEVVEAAKMANAHDFIMNL--PQGY----DTEVGE--- 473

Query: 108 RG--ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK-VMEALRQLAQDGHTVIC 164
           RG  +SGG+K+RLS+A   + +P ++  DE T+ LD  ++E  + EAL  L++   T + 
Sbjct: 474 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL-ESESIIQEALDVLSK-DRTTLI 531

Query: 165 SIHQPRGSVYFKFDDIVLLTEGKLV 189
             H  R S     D IV++  G +V
Sbjct: 532 VAH--RLSTITHADKIVVIENGHIV 554

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 23/150 (15%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF--------AYVRQEDL 53
           GPSG+GKTT + ++AG  + S     +G L  + +  ++               V Q   
Sbjct: 38  GPSGAGKTTFMRIIAGLDVPS-----TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92

Query: 54  FFSQLTVRETLSLAAELQ-LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
            +  LT  E ++       + +    EE  + V  +   L +      +V +   R +SG
Sbjct: 93  LYPNLTAFENIAFPLTNMKMSK----EEIRKRVEEVAKILDI-----HHVLNHFPRELSG 143

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDA 142
            +++R++LA  L+  PS++  DEP + LDA
Sbjct: 144 AQQQRVALARALVKDPSLLLLDEPFSNLDA 173

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Length = 842

 Score = 44.0 bits (105), Expect = 1e-04
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 111 SGGEKKRLSLACEL--IASPSVIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           SGGE +R+ LA EL        +Y  DEPTTGL     E++   L +L   G+TVI
Sbjct: 732 SGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 12/129 (9%)

Query: 49  RQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
           R       Q  +RE      +  L E  S  +       L           +  G   + 
Sbjct: 222 RIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVEL--TKDFEVRVHAPNGVLTID 279

Query: 109 GISGGEKKRLSLA-----CELIAS---PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160
            +SGGE+  ++L+        +       +I  DEPT  LD  +  K+ E  R++     
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIIL-DEPTVYLDENRRAKLAEIFRKVKSIPQ 338

Query: 161 TVICSIHQP 169
            +I + H  
Sbjct: 339 MIIIT-HHR 346

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Length = 916

 Score = 42.1 bits (100), Expect = 5e-04
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 111 SGGEKKRLSLACEL--IASPSVIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
           SGGE +R+ LA EL    +   +Y  DEPT GL      K++E L +L   G+TVI
Sbjct: 807 SGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	607
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.97
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.97
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.97
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.97
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.97
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.97
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.97
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.97
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.96
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.96
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.96
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.95
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.95
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.95
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.95
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.94
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.93
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.92
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.92
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.92
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.91
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.91
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.88
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.86
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.86
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.86
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.82
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.81
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.8
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.8
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.77
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.77
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.76
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.76
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.76
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.74
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.73
2og2_A	359	Putative signal recognition particle receptor; nuc	99.72
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.72
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.7
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.69
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.68
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.67
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.64
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.61
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.6
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.57
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.56
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.56
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.55
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.55
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.54
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.54
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.54
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.53
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.53
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.52
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.52
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.51
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.51
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.5
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.5
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.48
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.47
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.47
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.44
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.44
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.43
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.42
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.39
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.32
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.31
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.31
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.3
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.29
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.29
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.27
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.27
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.26
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.22
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.21
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.18
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.18
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.17
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.16
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.14
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.09
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.07
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.06
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.04
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.03
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.02
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.0
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.91
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.89
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.86
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.85
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.84
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.83
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.78
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.75
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.72
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.66
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.63
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.56
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.55
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.52
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.45
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.44
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.44
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.43
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.38
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.36
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.35
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.19
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.18
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.15
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.15
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.15
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.11
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.1
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.06
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.97
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.97
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.9
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.84
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.78
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.75
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.7
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.58
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.57
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.52
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.47
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.47
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.43
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.37
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.32
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.2
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.12
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.08
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.04
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.97
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.91
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.91
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.89
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.81
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.79
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.77
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.66
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.61
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.59
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.58
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.57
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.55
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.52
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.48
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.44
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.4
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.38
3bos_A	242	Putative DNA replication factor; P-loop containing	96.34
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.29
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.19
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.17
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.16
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.15
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.14
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.11
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.1
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.99
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.96
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.87
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.65
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.63
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	95.61
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.52
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.51
2qgz_A	308	Helicase loader, putative primosome component; str	95.36
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.33
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.22
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	95.15
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.14
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.07
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.98
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	94.96
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.9
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.82
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.77
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	94.71
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.68
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	94.66
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.6
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	94.51
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.5
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	94.47
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.44
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.31
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.29
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	94.24
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	94.18
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.1
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	94.08
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	94.01
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	93.85
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	93.78
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	93.69
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	93.65
1via_A	175	Shikimate kinase; structural genomics, transferase	93.57
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	93.46
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	93.41
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	93.38
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	93.37
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	93.31
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	93.23
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	93.21
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	93.07
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	93.0
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	92.86
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	92.85
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	92.83
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	92.81
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	92.73
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	92.67
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	92.64
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	92.62
2ged_A	193	SR-beta, signal recognition particle receptor beta	92.62
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	92.53
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	92.53
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.42
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	92.41
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	92.39
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	92.35
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	92.35
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	92.3
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	92.26
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	92.21
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	92.2
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.18
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	92.15
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	92.12
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	92.12
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	92.11
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	92.0
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	91.97
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	91.97
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	91.96
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	91.91
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	91.88
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	91.86
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	91.84
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	91.78
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	91.73
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	91.73
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	91.71
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	91.71
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	91.7
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	91.67
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	91.58
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	91.51
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	91.5
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	91.48
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	91.48
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	91.47
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	91.46
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	91.45
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	91.41
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	91.4
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	91.38
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	91.33
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	91.33
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	91.32
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	91.32
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	91.3
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	91.28
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	91.28
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	91.23
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	91.22
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	91.22
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	91.21
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	91.2
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	91.16
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	91.11
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	91.1
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	90.96
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	90.94
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	90.93
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	90.92
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	90.92
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	90.83
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	90.83
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	90.82
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	90.8
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	90.79
1nrj_B	218	SR-beta, signal recognition particle receptor beta	90.77
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	90.76
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	90.76
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	90.73
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	90.61
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.6
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	90.58
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	90.57
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	90.48
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	90.47
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	90.46
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	90.43
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	90.38
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	90.28
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	90.25
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	90.22
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	90.2
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	90.18
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	90.17
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	90.15
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	90.14
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	90.14
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	90.13
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	90.1
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	90.09
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	90.08
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	90.08
2vli_A	183	Antibiotic resistance protein; transferase, tunica	89.98
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	89.96
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	89.95
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	89.89
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	89.83
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	89.76
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	89.74
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	89.71
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	89.69
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	89.69
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	89.62
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	89.6
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	89.58
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	89.57
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	89.5
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	89.48
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	89.44
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	89.43
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	89.43
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	89.38
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	89.38
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	89.37
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	89.37
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	89.33
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	89.29
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	89.25
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	89.25
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	89.22
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	89.21
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	89.2
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	89.2
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	89.17
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	89.17
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	89.16
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	89.16
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	89.13
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	89.13
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	89.11
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	89.09
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	89.09
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	89.02
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	88.98
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	88.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	88.95
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	88.95
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	88.94
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	88.89
3llu_A	196	RAS-related GTP-binding protein C; structural geno	88.88
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	88.85
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	88.78
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	88.66
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	88.6
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	88.43
2fh5_B	214	SR-beta, signal recognition particle receptor beta	88.39
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	88.35
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	88.32
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	88.29
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	88.23
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	88.16
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	88.14
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	88.09
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	88.02
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	87.92
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	87.91
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	87.89
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	87.87
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	87.85
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	87.78
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	87.61
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	87.55
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	87.2
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	87.15
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	86.99
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	86.92
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	86.86
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	86.85
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	86.79
2chg_A	226	Replication factor C small subunit; DNA-binding pr	86.79
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	86.72
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	86.58
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	86.57
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	86.17
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	86.1
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	86.08
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	86.07
2hf9_A	226	Probable hydrogenase nickel incorporation protein	86.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	85.99
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	85.82
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	85.6
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	85.5
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	85.44
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	85.43
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	85.41
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	85.35
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	85.29
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	85.13
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	84.98
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	84.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	84.88
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	84.86
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	85.16
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	84.68
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	84.42
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	84.37
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	84.35
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	84.29
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	84.27
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	84.16
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	84.09
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	83.99
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	83.98
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	83.67
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	83.64
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	83.45
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	83.31
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	83.3
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	83.26
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	83.17
3ice_A	422	Transcription termination factor RHO; transcriptio	83.03
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	82.79
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	82.78
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	82.72
3pvs_A	447	Replication-associated recombination protein A; ma	82.37
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	82.19
1wxq_A	397	GTP-binding protein; structural genomics, riken st	82.12
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	82.1
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	82.09
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	82.02
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	81.96
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	81.8
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	81.72
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	81.7
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	81.61
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	81.34
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	81.13
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	81.02
3co5_A	143	Putative two-component system transcriptional RES	80.93
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	80.87

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=1.4e-41  Score=341.00  Aligned_cols=185  Identities=29%  Similarity=0.406  Sum_probs=160.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc---------ceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA---------YKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~---------~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|.++....         +++|||+|++.+++.+||+||+.+....+
T Consensus        37 iG~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~  111 (235)
T 3tif_A           37 MGPSGSGKSTMLNIIGCLDKPT-----EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK  111 (235)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred             ECCCCCcHHHHHHHHhcCCCCC-----ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhh
Confidence            6999999999999999999987     899999999875431         24999999999999999999999987654


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                      .....+.++..+++.++++.+||.+..    .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~----~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~  187 (235)
T 3tif_A          112 YRGAMSGEERRKRALECLKMAELEERF----ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL  187 (235)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHTTCCGGG----TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHCCCChhh----hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            222345666778899999999996432    2456788999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       152 L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |++++++ |+|||++||++.  +...||++++|++|+++..+++++
T Consensus       188 l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~  231 (235)
T 3tif_A          188 LKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRG  231 (235)
T ss_dssp             HHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC-
T ss_pred             HHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhh
Confidence            9999865 999999999975  457899999999999999998765

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=9.6e-42  Score=360.66  Aligned_cols=182  Identities=25%  Similarity=0.373  Sum_probs=163.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++|+++...        ++++|||+|++.+++.+||+||+.+....+ 
T Consensus        60 iGpnGaGKSTLlr~i~GL~~p~-----~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~-  133 (366)
T 3tui_C           60 IGASGAGKSTLIRCVNLLERPT-----EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD-  133 (366)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS-
T ss_pred             EcCCCchHHHHHHHHhcCCCCC-----ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc-
Confidence            6999999999999999999987     89999999987642        245999999999999999999999987754 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..++++.+++++++++.+||.+.+     ++++.+|||||||||+|||||+.+|++|||||||||||+.++..++++|
T Consensus       134 --~~~~~~~~~~v~~lL~~vgL~~~~-----~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL  206 (366)
T 3tui_C          134 --NTPKDEVKRRVTELLSLVGLGDKH-----DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL  206 (366)
T ss_dssp             --CCCHHHHHHHHHHHHHHHTCGGGT-----TCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHcCCchHh-----cCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence              245677788999999999996554     4567899999999999999999999999999999999999999999999


Q ss_pred             HHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++ .|.|||++||++ ..+..+||||++|++|++++.|++++
T Consensus       207 ~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~e  250 (366)
T 3tui_C          207 KDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSE  250 (366)
T ss_dssp             HHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred             HHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99975 599999999996 47888999999999999999998755

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=2e-41  Score=360.25  Aligned_cols=182  Identities=30%  Similarity=0.424  Sum_probs=164.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|+|+++++     +|+|.++|+++...   .+.+|||+|+..+++.+||+||+.|..+.+   ..+
T Consensus        35 lGpsGsGKSTLLr~iaGl~~p~-----~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~  106 (381)
T 3rlf_A           35 VGPSGCGKSTLLRMIAGLETIT-----SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAK  106 (381)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCC
T ss_pred             EcCCCchHHHHHHHHHcCCCCC-----CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCC
Confidence            6999999999999999999987     89999999987543   356999999999999999999999988764   346


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      +++.+++++++++.+||.+..     ++++++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.+
T Consensus       107 ~~~~~~~v~~~l~~~~L~~~~-----~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~  181 (381)
T 3rlf_A          107 KEVINQRVNQVAEVLQLAHLL-----DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK  181 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGT-----TCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCchhh-----cCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH
Confidence            777788999999999996544     457789999999999999999999999999999999999999999999999975


Q ss_pred             -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                       .|.|+|++||+. .++..++|||++|++|+++..|++++
T Consensus       182 ~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~  220 (381)
T 3rlf_A          182 RLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLE  220 (381)
T ss_dssp             HHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             hCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHH
Confidence             499999999996 57889999999999999999998765

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=1e-41  Score=360.20  Aligned_cols=182  Identities=26%  Similarity=0.425  Sum_probs=160.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeC----CC---ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS----SN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~----~~---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~   73 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|+++    ..   .++++|||+|+..+++.+||+||+.|+...+  
T Consensus        36 lGpsGsGKSTLLr~iaGl~~p~-----~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~--  108 (359)
T 3fvq_A           36 IGASGCGKTTLLRCLAGFEQPD-----SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG--  108 (359)
T ss_dssp             EESTTSSHHHHHHHHHTSSCCS-----EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS--
T ss_pred             ECCCCchHHHHHHHHhcCCCCC-----CcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc--
Confidence            5999999999999999999987     89999999986    22   1356999999999999999999999976543  


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ..++++.+++++++++.+||.+..     ++++++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+
T Consensus       109 -~~~~~~~~~~v~~~l~~~gL~~~~-----~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~  182 (359)
T 3fvq_A          109 -KGRTAQERQRIEAMLELTGISELA-----GRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMI  182 (359)
T ss_dssp             -SCCSHHHHHHHHHHHHHHTCGGGT-----TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             -CCChHHHHHHHHHHHHHcCCchHh-----cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence             234456677899999999996554     45678899999999999999999999999999999999999999999888


Q ss_pred             HHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++. +.|.|+|++||+. .++..+||||++|++|+++..|++++
T Consensus       183 ~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~e  225 (359)
T 3fvq_A          183 AALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHE  225 (359)
T ss_dssp             HHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHH
Confidence            875 5799999999996 57888999999999999999998765

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=7.6e-41  Score=333.38  Aligned_cols=179  Identities=27%  Similarity=0.368  Sum_probs=157.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------c-ceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------A-YKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~-~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|+++...        + ++++||+|++.+++.+||+||+.+....+
T Consensus        36 iG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~  110 (224)
T 2pcj_A           36 IGASGSGKSTLLYILGLLDAPT-----EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM  110 (224)
T ss_dssp             EECTTSCHHHHHHHHTTSSCCS-----EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence            5999999999999999999987     89999999987542        1 35999999999999999999999976543


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                         ..+.++.+++++++++.+||.+..+     +++++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.
T Consensus       111 ---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~  182 (224)
T 2pcj_A          111 ---GKPKKEAKERGEYLLSELGLGDKLS-----RKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI  182 (224)
T ss_dssp             ---TCCHHHHHHHHHHHHHHTTCTTCTT-----CCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence               2344555678999999999976554     45678999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCC
Q 007344          152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA  194 (607)
Q Consensus       152 L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~  194 (607)
                      |++++++|+|||++||++. .+ ..||++++|++|++++.|+.
T Consensus       183 l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~  223 (224)
T 2pcj_A          183 FLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEITR  223 (224)
T ss_dssp             HHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred             HHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence            9999877999999999964 45 78999999999999998863

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=3.8e-41  Score=345.12  Aligned_cols=182  Identities=28%  Similarity=0.426  Sum_probs=159.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCC-CCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQED-LFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++|+++...       ++++|||+|++ ..+..+||+||+.|..... 
T Consensus        40 iGpnGsGKSTLl~~l~Gl~~p~-----~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~-  113 (275)
T 3gfo_A           40 LGGNGVGKSTLFQNFNGILKPS-----SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM-  113 (275)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS-
T ss_pred             ECCCCCCHHHHHHHHHcCCCCC-----CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc-
Confidence            6999999999999999999987     89999999987421       24699999986 2344789999999987643 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..+.++.+++++++++.+||.+..+     +++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|
T Consensus       114 --~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l  186 (275)
T 3gfo_A          114 --KLPEDEIRKRVDNALKRTGIEHLKD-----KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL  186 (275)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTCGGGTT-----SBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHcCCchhhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence              3456777788999999999965554     467789999999999999999999999999999999999999999999


Q ss_pred             HHHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ ++|+|||++||++. .+..+||++++|++|++++.|++++
T Consensus       187 ~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~  230 (275)
T 3gfo_A          187 VEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKE  230 (275)
T ss_dssp             HHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence            9998 66999999999975 6778899999999999999998766

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=6.8e-41  Score=341.41  Aligned_cols=182  Identities=29%  Similarity=0.398  Sum_probs=158.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC------------------ccceEEEEccCCCCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------------------KAYKFAYVRQEDLFFSQLTVRE   62 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~------------------~~~~i~yv~Q~~~l~~~lTV~E   62 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|+++..                  .++++|||+|++.+++.+||+|
T Consensus        38 iG~nGsGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e  112 (262)
T 1b0u_A           38 IGSSGSGKSTFLRCINFLEKPS-----EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE  112 (262)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHH
Confidence            5999999999999999999987     8999999998751                  1235999999999999999999


Q ss_pred             HHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 007344           63 TLSLAA-ELQLPEILSVEERDEYVNSLLFKLGLVSC-ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGL  140 (607)
Q Consensus        63 ~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGL  140 (607)
                      |+.++. ..+   ..+.++.+++++++++.+||.+. .+     +++.+|||||||||+||+||+.+|++|||||||+||
T Consensus       113 ~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~L  184 (262)
T 1b0u_A          113 NVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG-----KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL  184 (262)
T ss_dssp             HHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT-----SCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTS
T ss_pred             HHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence            999864 332   23445556789999999999655 44     457789999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          141 DAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       141 D~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |+.++..+++.|++++++|+|||++||++ ..+..+||++++|++|++++.|++++
T Consensus       185 D~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (262)
T 1b0u_A          185 DPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQ  239 (262)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999987799999999996 46778899999999999999887654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=9.5e-41  Score=340.18  Aligned_cols=182  Identities=29%  Similarity=0.421  Sum_probs=158.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC--Cc-----cceEEEEccCCCCCCCCCHHHHHHHHH-HccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NK-----AYKFAYVRQEDLFFSQLTVRETLSLAA-ELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~--~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~-~~~~   72 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|+++.  ..     ++++|||+|++.+++.+||+||+.+.. ..+ 
T Consensus        56 iG~NGsGKSTLlk~l~Gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~-  129 (263)
T 2olj_A           56 IGPSGSGKSTFLRCLNLLEDFD-----EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR-  129 (263)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS-
T ss_pred             EcCCCCcHHHHHHHHHcCCCCC-----CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc-
Confidence            5999999999999999999987     899999999874  11     235999999999999999999999864 332 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..+.++.+++++++++.+||.+..+     +++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|
T Consensus       130 --~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l  202 (263)
T 2olj_A          130 --KWPREKAEAKAMELLDKVGLKDKAH-----AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM  202 (263)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTCGGGTT-----SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHCCCchHhc-----CChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence              2344555678999999999965544     467789999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++++|+|||++||++ ..+..+||++++|++|++++.|++++
T Consensus       203 ~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~  245 (263)
T 2olj_A          203 KQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPED  245 (263)
T ss_dssp             HHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99987799999999996 46778899999999999999887654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=1.1e-40  Score=352.30  Aligned_cols=182  Identities=29%  Similarity=0.410  Sum_probs=162.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|+++...   ++++|||+|+..+++.+||+||+.|..+.+   ..+
T Consensus        47 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~  118 (355)
T 1z47_A           47 LGPSGSGKTTILRLIAGLERPT-----KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVP  118 (355)
T ss_dssp             ECSTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCC
T ss_pred             ECCCCCcHHHHHHHHhCCCCCC-----ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCC
Confidence            5999999999999999999987     89999999987542   356999999999999999999999987653   235


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      +++.+++++++++.+||.+..     ++++++|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+
T Consensus       119 ~~~~~~~v~~~l~~~gL~~~~-----~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~  193 (355)
T 1z47_A          119 KDEMDARVRELLRFMRLESYA-----NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD  193 (355)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGT-----TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChhHh-----cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            566778899999999996554     456788999999999999999999999999999999999999999999999975


Q ss_pred             -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                       .|.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus       194 ~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~  232 (355)
T 1z47_A          194 EMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEE  232 (355)
T ss_dssp             HHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             hcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence             499999999996 47888999999999999999998765

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.4e-40  Score=352.63  Aligned_cols=182  Identities=28%  Similarity=0.425  Sum_probs=162.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|+++...   .+++|||+|+..+++++||+||+.|..+.+   ..+
T Consensus        35 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~  106 (362)
T 2it1_A           35 LGPSGSGKSTLLYTIAGIYKPT-----SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAP  106 (362)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCC
T ss_pred             ECCCCchHHHHHHHHhcCCCCC-----ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCC
Confidence            5999999999999999999987     89999999987542   356999999999999999999999987653   234


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      +++.+++++++++.+||.+..+     +++++|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+
T Consensus       107 ~~~~~~~v~~~l~~~~L~~~~~-----r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~  181 (362)
T 2it1_A          107 REEIDKKVREVAKMLHIDKLLN-----RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK  181 (362)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCTT-----CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCchHhh-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence            5666788999999999976554     46778999999999999999999999999999999999999999999999975


Q ss_pred             -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                       .|.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus       182 ~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~  220 (362)
T 2it1_A          182 ELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDE  220 (362)
T ss_dssp             HHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             hCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence             499999999996 47788999999999999999998765

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=2.6e-40  Score=352.25  Aligned_cols=182  Identities=29%  Similarity=0.438  Sum_probs=161.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---------ccceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||||+|+|+++++     +|+|.++|+++..         ..+++|||+|+..+++++||+||+.|..+.+
T Consensus        35 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~  109 (372)
T 1g29_1           35 LGPSGCGKTTTLRMIAGLEEPS-----RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR  109 (372)
T ss_dssp             ECSTTSSHHHHHHHHHTSSCCS-----EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred             ECCCCcHHHHHHHHHHcCCCCC-----ccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence            5999999999999999999987     8999999987633         2356999999999999999999999987654


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                         ..++++.+++++++++.+||.+..     ++++++|||||||||+|||||+.+|++|||||||+|||+.++.++.+.
T Consensus       110 ---~~~~~~~~~~v~~~l~~~~L~~~~-----~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~  181 (372)
T 1g29_1          110 ---KVPRQEIDQRVREVAELLGLTELL-----NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE  181 (372)
T ss_dssp             ---TCCHHHHHHHHHHHHHHHTCGGGT-----TCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHHHHHCCCchHh-----cCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH
Confidence               234566778899999999996554     456788999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       152 L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |+++.+ .|.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus       182 l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~  226 (372)
T 1g29_1          182 LKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDE  226 (372)
T ss_dssp             HHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence            999975 499999999996 57888999999999999999998765

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=1.3e-40  Score=352.68  Aligned_cols=182  Identities=29%  Similarity=0.392  Sum_probs=160.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|+++...   .+++|||+|+..+++++||+||+.|..+.+   ..+
T Consensus        35 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~  106 (359)
T 2yyz_A           35 LGPSGCGKTTTLLMLAGIYKPT-----SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RIS  106 (359)
T ss_dssp             ECSTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSH
T ss_pred             EcCCCchHHHHHHHHHCCCCCC-----ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCC
Confidence            5999999999999999999987     89999999987542   356999999999999999999999976432   233


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      +++.+++++++++.+||.+..     ++++++|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+
T Consensus       107 ~~~~~~~v~~~l~~~~L~~~~-----~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~  181 (359)
T 2yyz_A          107 KDEVEKRVVEIARKLLIDNLL-----DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ  181 (359)
T ss_dssp             HHHTTHHHHHHHHHTTCGGGT-----TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCchHh-----cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence            455567899999999996554     456788999999999999999999999999999999999999999999999975


Q ss_pred             -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                       .|.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus       182 ~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~  220 (359)
T 2yyz_A          182 ELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDE  220 (359)
T ss_dssp             HHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             hcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence             499999999996 47788999999999999999998765

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=9.3e-41  Score=339.50  Aligned_cols=185  Identities=28%  Similarity=0.380  Sum_probs=158.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHc-cCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAEL-QLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~-~~~   73 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|+++...      ++++|||+|++.+++.+||+||+.+.... +..
T Consensus        39 iG~nGsGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~  113 (257)
T 1g6h_A           39 IGPNGSGKSTLINVITGFLKAD-----EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES  113 (257)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSC
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccC
Confidence            5999999999999999999987     89999999987542      23599999999999999999999986532 111


Q ss_pred             C---------CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 007344           74 E---------ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQ  144 (607)
Q Consensus        74 ~---------~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~  144 (607)
                      .         ....++.+++++++++.+||.+..+     ++++.|||||||||+||++|+.+|++|+|||||+|||+.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~  188 (257)
T 1g6h_A          114 PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD-----RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL  188 (257)
T ss_dssp             HHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT-----SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHH
T ss_pred             cccccccccccCCHHHHHHHHHHHHHHcCCchhhC-----CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence            0         0122345567899999999965554     4567899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          145 AEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       145 ~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +..+++.|++++++|+|||+++|++. .+...||++++|++|++++.|++++
T Consensus       189 ~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          189 AHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             HHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence            99999999999878999999999975 6678899999999999999987654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=2.3e-40  Score=336.10  Aligned_cols=182  Identities=31%  Similarity=0.442  Sum_probs=159.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|+++...    ++++|||+|++.+++.+||+||+.+....+   ..
T Consensus        47 ~G~NGsGKSTLlk~l~Gl~~p~-----~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~  118 (256)
T 1vpl_A           47 IGPNGAGKTTTLRIISTLIKPS-----SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---AS  118 (256)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CC
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CC
Confidence            5999999999999999999887     89999999987542    245999999999999999999999976543   12


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      +.++.+++++++++.+||.+..+     ++++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus       119 ~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~  193 (256)
T 1vpl_A          119 SSSEIEEMVERATEIAGLGEKIK-----DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS  193 (256)
T ss_dssp             CHHHHHHHHHHHHHHHCCGGGGG-----SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHCCCchHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence            34455567899999999976554     4567899999999999999999999999999999999999999999999998


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++|+|||++||++ ..+..+||++++|++|++++.|++++
T Consensus       194 ~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~  232 (256)
T 1vpl_A          194 QEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEE  232 (256)
T ss_dssp             HTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred             hCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHH
Confidence            7899999999996 46777899999999999999887654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=1.2e-40  Score=335.26  Aligned_cols=180  Identities=26%  Similarity=0.455  Sum_probs=156.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|+++..   .++++|||+|++.+++.+||+||+.+....+     .
T Consensus        30 iG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~   99 (240)
T 2onk_A           30 LGPTGAGKSVFLELIAGIVKPD-----RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----E   99 (240)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----C
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----C
Confidence            5999999999999999999887     8999999998743   2346999999999999999999998864321     1


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      ....+++++++++.+||.+..+     +++++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus       100 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~  174 (240)
T 2onk_A          100 RVERDRRVREMAEKLGIAHLLD-----RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR  174 (240)
T ss_dssp             HHHHHHHHHHHHHTTTCTTTTT-----CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHcCCHHHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            2223567899999999976554     45678999999999999999999999999999999999999999999999975


Q ss_pred             -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                       +|+|||++||++ .++...||++++|++|++++.|++++
T Consensus       175 ~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~  213 (240)
T 2onk_A          175 EFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKE  213 (240)
T ss_dssp             HHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence             499999999996 46778899999999999999987654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=1.5e-40  Score=351.94  Aligned_cols=182  Identities=28%  Similarity=0.431  Sum_probs=161.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC--------ccceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~--------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|+++..        .++++|||+|+..+++.+||+||+.|..+.+ 
T Consensus        37 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-  110 (353)
T 1oxx_K           37 LGPSGAGKTTFMRIIAGLDVPS-----TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM-  110 (353)
T ss_dssp             ECSCHHHHHHHHHHHHTSSCCS-----EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS-
T ss_pred             ECCCCCcHHHHHHHHhCCCCCC-----ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc-
Confidence            5999999999999999999987     8999999987632        2356999999999999999999999976543 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..++++.+++++++++.+||.+..     ++++++|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|
T Consensus       111 --~~~~~~~~~~v~~~l~~~~L~~~~-----~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  183 (353)
T 1oxx_K          111 --KMSKEEIRKRVEEVAKILDIHHVL-----NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV  183 (353)
T ss_dssp             --SCCHHHHHHHHHHHHHHTTCGGGT-----TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHcCCchHh-----cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence              235566778899999999996554     4567889999999999999999999999999999999999999999999


Q ss_pred             HHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++.+ .|+|+|++||++ .++..++|++++|++|+++..|++++
T Consensus       184 ~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~  227 (353)
T 1oxx_K          184 KEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPED  227 (353)
T ss_dssp             HHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99975 499999999996 47888999999999999999998765

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=2.2e-40  Score=352.38  Aligned_cols=182  Identities=24%  Similarity=0.364  Sum_probs=155.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|+|+++++     +|+|.++|+++...   .+++|||+|+..+++++||+||+.|..+.+   ..+
T Consensus        43 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~  114 (372)
T 1v43_A           43 LGPSGCGKTTTLRMIAGLEEPT-----EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFP  114 (372)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCC
T ss_pred             ECCCCChHHHHHHHHHcCCCCC-----ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCC
Confidence            5999999999999999999987     89999999987542   356999999999999999999999875432   245


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      +++.+++++++++.+||.+..     ++++++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.+
T Consensus       115 ~~~~~~~v~~~l~~~~L~~~~-----~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~  189 (372)
T 1v43_A          115 KDEIDKRVRWAAELLQIEELL-----NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ  189 (372)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGT-----TSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChhHh-----cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence            566778899999999996554     456789999999999999999999999999999999999999999999999975


Q ss_pred             c-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      + |.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus       190 ~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~  228 (372)
T 1v43_A          190 KLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTE  228 (372)
T ss_dssp             HHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             hCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            4 99999999996 47788999999999999999998765

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=2.9e-40  Score=348.73  Aligned_cols=179  Identities=27%  Similarity=0.458  Sum_probs=158.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|+++...   ++++|||+|+..+++.+||+||+.|....+.   .+
T Consensus        32 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~  103 (348)
T 3d31_A           32 LGPTGAGKTLFLELIAGFHVPD-----SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IK  103 (348)
T ss_dssp             ECCCTHHHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CC
T ss_pred             ECCCCccHHHHHHHHHcCCCCC-----CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CC
Confidence            5999999999999999999987     89999999987543   3469999999999999999999999876432   11


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      ++   ++++++++.+||.+..|     +++++|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+
T Consensus       104 ~~---~~v~~~l~~~~L~~~~~-----~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~  175 (348)
T 3d31_A          104 DP---KRVLDTARDLKIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK  175 (348)
T ss_dssp             CH---HHHHHHHHHTTCTTTTT-----SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHcCCchHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence            12   67899999999976554     46778999999999999999999999999999999999999999999999975


Q ss_pred             -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                       .|.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus       176 ~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~  214 (348)
T 3d31_A          176 KNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEE  214 (348)
T ss_dssp             HTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence             599999999996 47788999999999999999998765

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=3e-40  Score=332.43  Aligned_cols=181  Identities=27%  Similarity=0.390  Sum_probs=155.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|+++...      ++++|||+|++.+++.+||+||+.+.....   
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---  109 (240)
T 1ji0_A           38 IGANGAGKTTTLSAIAGLVRAQ-----KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR---  109 (240)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC---
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC---
Confidence            5999999999999999999887     89999999987542      124999999999999999999998864211   


Q ss_pred             CCCHHHHHHHHHHHHHHcC-CCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLG-LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ...++.+++++++++.++ |.+..     +++++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+
T Consensus       110 -~~~~~~~~~~~~~l~~~~~l~~~~-----~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~  183 (240)
T 1ji0_A          110 -KDKEGIKRDLEWIFSLFPRLKERL-----KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ  183 (240)
T ss_dssp             -CCSSHHHHHHHHHHHHCHHHHTTT-----TSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHcccHhhHh-----cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence             122344567888999994 86544     34677899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++|+|||++||++. .+...||++++|++|++++.|++++
T Consensus       184 ~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~  225 (240)
T 1ji0_A          184 KINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASE  225 (240)
T ss_dssp             HHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred             HHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99878999999999964 6778899999999999999887654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=4.4e-40  Score=335.98  Aligned_cols=180  Identities=29%  Similarity=0.465  Sum_probs=157.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|+++++     +|+|.++|+++...     .+.++|++|++.+++.+||+||+.+.....    
T Consensus        43 iG~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~----  113 (266)
T 4g1u_C           43 IGPNGAGKSTLLRLLTGYLSPS-----HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY----  113 (266)
T ss_dssp             ECCTTSCHHHHHHHHTSSSCCS-----SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS----
T ss_pred             ECCCCCcHHHHHHHHhcCCCCC-----CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc----
Confidence            6999999999999999999987     89999999998653     235999999999888899999999876432    


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA------SPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~------~p~illLDEPtsGLD~~~~~~i~  149 (607)
                       ...+.+++++++++.+||.+..+.     .+++|||||||||+|||||+.      +|++|||||||+|||+.++..++
T Consensus       114 -~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~  187 (266)
T 4g1u_C          114 -GGSQDRQALQQVMAQTDCLALAQR-----DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL  187 (266)
T ss_dssp             -CSTTHHHHHHHHHHHTTCSTTTTS-----BGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH
T ss_pred             -CcHHHHHHHHHHHHHcCChhHhcC-----CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH
Confidence             112345678999999999766544     567899999999999999999      99999999999999999999999


Q ss_pred             HHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.|++++++ |+|||++||++ ..+..+||++++|++|++++.|++++
T Consensus       188 ~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~~~~  234 (266)
T 4g1u_C          188 RLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGTPEE  234 (266)
T ss_dssp             HHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            999999865 57999999996 46778899999999999999998765

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=1.5e-39  Score=332.21  Aligned_cols=181  Identities=27%  Similarity=0.368  Sum_probs=154.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--cceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQED-LFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|.++...  ++++|||+|++ ..++.+||+||+.+.....    .+
T Consensus        39 iG~nGsGKSTLl~~i~Gl~~p~-----~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~  109 (266)
T 2yz2_A           39 AGNTGSGKSTLLQIVAGLIEPT-----SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YP  109 (266)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CT
T ss_pred             ECCCCCcHHHHHHHHhCCCCCC-----CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CC
Confidence            5999999999999999999887     89999999987532  34699999995 5667789999999864321    11


Q ss_pred             HHHHHHHHHHHHHHcCCC--ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           78 VEERDEYVNSLLFKLGLV--SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      .++.+++++++++.+||.  +..+     +++++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++
T Consensus       110 ~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l  184 (266)
T 2yz2_A          110 DRDPVPLVKKAMEFVGLDFDSFKD-----RVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW  184 (266)
T ss_dssp             TSCSHHHHHHHHHHTTCCHHHHTT-----CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcCCccccc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence            122345688999999996  5544     456789999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       156 a~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++|+|||++||++. .+..+||++++|++|++++.|++++
T Consensus       185 ~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~  224 (266)
T 2yz2_A          185 KTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRME  224 (266)
T ss_dssp             HHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHH
T ss_pred             HHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            877999999999975 5667899999999999999887654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=5.5e-39  Score=325.14  Aligned_cols=184  Identities=25%  Similarity=0.314  Sum_probs=148.9

Q ss_pred             CCCCCCcHHHHHHHHHcC--cCCCCCCccceEEEECCeeCCCcc------ceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQ--LMASPRLHLSGLLEVNGKPSSNKA------YKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~--~~~~~~~~~~G~I~~~G~~~~~~~------~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+|+|+|+  .+|+     +|+|.++|+++....      ..++||+|++.+++.+||+||+.+......
T Consensus        35 ~G~nGsGKSTLlk~l~Gl~~~~p~-----~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  109 (250)
T 2d2e_A           35 MGPNGAGKSTLGKILAGDPEYTVE-----RGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKL  109 (250)
T ss_dssp             ECSTTSSHHHHHHHHHTCTTCEEE-----EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCC-----ceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhc
Confidence            599999999999999998  5565     899999999875421      238999999999999999999998653211


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCC-CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRG-ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~-LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      .......+..++++++++.+||. +..|     +++.. |||||||||+||++|+.+|++|+|||||+|||+.++..+++
T Consensus       110 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~  184 (250)
T 2d2e_A          110 GREVGVAEFWTKVKKALELLDWDESYLS-----RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR  184 (250)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHTCCGGGGG-----SBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHcCCChhHhc-----CCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence            11123344556789999999993 4444     45667 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhh-hcceeeecCCeeeeeCCCC
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFK-FDDIVLLTEGKLVYAGPAR  195 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~-~D~v~lL~~G~iv~~G~~~  195 (607)
                      .|++++++|+|||++||++. .+... ||++++|++|++++.|+++
T Consensus       185 ~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~  229 (250)
T 2d2e_A          185 GVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPE  229 (250)
T ss_dssp             HHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHH
T ss_pred             HHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHH
Confidence            99999877999999999975 55566 5999999999999988754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=4.2e-38  Score=321.67  Aligned_cols=185  Identities=25%  Similarity=0.306  Sum_probs=153.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc--CCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHH-cc
Q 007344            1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAE-LQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~--~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-~~   71 (607)
                      +||||||||||||+|+|+.  +++     +|+|.++|+++...      +..++||+|++.+++.+||.|++.+... .+
T Consensus        52 ~G~NGsGKSTLlk~l~Gl~~~~p~-----~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~  126 (267)
T 2zu0_C           52 MGPNGSGKSTLSATLAGREDYEVT-----GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR  126 (267)
T ss_dssp             ECCTTSSHHHHHHHHHTCTTCEEE-----EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCC-----CeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhh
Confidence            5999999999999999984  444     89999999987532      1239999999999999999999987542 11


Q ss_pred             ---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCC-CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 007344           72 ---LPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVR-GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE  146 (607)
Q Consensus        72 ---~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~-~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~  146 (607)
                         .....+.++.+++++++++.+||. +..     ++++. +|||||||||+||+||+.+|++|||||||+|||+.++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~  201 (267)
T 2zu0_C          127 SYRGQETLDRFDFQDLMEEKIALLKMPEDLL-----TRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALK  201 (267)
T ss_dssp             HGGGCCCCCHHHHHHHHHHHHHHTTCCTTTT-----TSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHH
T ss_pred             hhhccccCCHHHHHHHHHHHHHHcCCChhHh-----cCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence               111234455567899999999995 333     34555 59999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCChhHHHhh-hcceeeecCCeeeeeCCCCC
Q 007344          147 KVMEALRQLAQDGHTVICSIHQPRGSVYFK-FDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       147 ~i~~~L~~la~~g~tvi~~~H~p~~~i~~~-~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+++.|++++++|+|||++||++. .+... ||++++|++|++++.|++++
T Consensus       202 ~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~  251 (267)
T 2zu0_C          202 VVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTL  251 (267)
T ss_dssp             HHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEETTEEEEEECTTH
T ss_pred             HHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcCHHH
Confidence            999999999877999999999975 45554 89999999999999998765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=6.4e-39  Score=329.52  Aligned_cols=185  Identities=28%  Similarity=0.360  Sum_probs=151.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC--Cc-----cceEEEEccCCCC--CCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NK-----AYKFAYVRQEDLF--FSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~--~~-----~~~i~yv~Q~~~l--~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|+++.  ..     ++++|||+|++.+  .+.+||+||+.++....
T Consensus        53 iG~NGsGKSTLlk~l~Gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~  127 (279)
T 2ihy_A           53 YGLNGAGKTTLLNILNAYEPAT-----SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS  127 (279)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---
T ss_pred             ECCCCCcHHHHHHHHhCCCCCC-----CeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhc
Confidence            5999999999999999999987     899999998875  21     2459999998754  34579999998753211


Q ss_pred             CC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           72 LP-EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        72 ~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      .. .....++.+++++++++.+||.+..+     +++..|||||||||+||+||+.+|++|||||||+|||+.++..+++
T Consensus       128 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~  202 (279)
T 2ihy_A          128 IGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-----QYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS  202 (279)
T ss_dssp             ------CCHHHHHHHHHHHHHTTCGGGTT-----SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             cccccCCcHHHHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHH
Confidence            00 00112334567899999999966554     4567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeE--EEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQDGHTV--ICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~g~tv--i~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .|++++++|+||  |++||++. .+...||++++|++|++++.|++++
T Consensus       203 ~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~  249 (279)
T 2ihy_A          203 ILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVED  249 (279)
T ss_dssp             HHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTEEEEEEEHHH
T ss_pred             HHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence            999998779999  99999964 6678899999999999999887644

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=3.3e-38  Score=319.06  Aligned_cols=176  Identities=27%  Similarity=0.375  Sum_probs=152.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||||+|+|++++     . |+|.++|+++...     +++++||+|++.+++.+||+||+.+...   .. 
T Consensus        32 iG~NGsGKSTLlk~l~Gl~~p-----~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~-  101 (249)
T 2qi9_C           32 VGPNGAGKSTLLARMAGMTSG-----K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---DK-  101 (249)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCC-----E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---ST-
T ss_pred             ECCCCCcHHHHHHHHhCCCCC-----C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---cC-
Confidence            599999999999999999875     3 9999999987432     2459999999999999999999987521   11 


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCC-------eEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS-------VIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~-------illLDEPtsGLD~~~~~~i  148 (607)
                      .+    +++++++++.+||.+..+     +.+.+|||||||||+||++|+.+|+       +|+|||||+|||+.++..+
T Consensus       102 ~~----~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l  172 (249)
T 2qi9_C          102 TR----TELLNDVAGALALDDKLG-----RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL  172 (249)
T ss_dssp             TC----HHHHHHHHHHTTCGGGTT-----SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred             Cc----HHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence            12    456889999999976554     4567899999999999999999999       9999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|++++++|+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus       173 ~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~  219 (249)
T 2qi9_C          173 DKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREE  219 (249)
T ss_dssp             HHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred             HHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9999999877999999999964 6778899999999999998887544

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=6.3e-38  Score=317.85  Aligned_cols=176  Identities=26%  Similarity=0.322  Sum_probs=149.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-EILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~   79 (607)
                      +||||||||||||+|+|+++|+     +|+|.+        .+++|||+|++.+++.+||+||+.+....... ......
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~I~~--------~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~  103 (253)
T 2nq2_C           37 LGQNGCGKSTLLDLLLGIHRPI-----QGKIEV--------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKS  103 (253)
T ss_dssp             ECCSSSSHHHHHHHHTTSSCCS-----EEEEEE--------CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCH
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEE--------eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCH
Confidence            5999999999999999999987     899982        34699999999999899999999986532211 001123


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-  158 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~-  158 (607)
                      +.+++++++++.+||.+..+     +.+.+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ 
T Consensus       104 ~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~  178 (253)
T 2nq2_C          104 HDYQVAMQALDYLNLTHLAK-----REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ  178 (253)
T ss_dssp             HHHHHHHHHHHHTTCGGGTT-----SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHcCChHHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            34567899999999976554     456789999999999999999999999999999999999999999999999876 


Q ss_pred             CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       159 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |+|||+++|++ ..+...||++++|++|+ ++.|++++
T Consensus       179 g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~  214 (253)
T 2nq2_C          179 NMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRN  214 (253)
T ss_dssp             CCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHH
T ss_pred             CCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHH
Confidence            99999999996 46778899999999999 88886544

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=4.1e-38  Score=318.11  Aligned_cols=178  Identities=25%  Similarity=0.397  Sum_probs=148.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|.++...     ++++|||+|++.+++ .||+||+.+...     .
T Consensus        41 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~  109 (247)
T 2ff7_A           41 VGRSGSGKSTLTKLIQRFYIPE-----NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----G  109 (247)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----T
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----C
Confidence            5999999999999999999987     89999999987542     235999999998887 599999987521     1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccc------cCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNV------GDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~v------g~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      .+    +++++++++.+++.+..+...      -++.++.|||||||||+|||+|+.+|++|+|||||+|||+.++..++
T Consensus       110 ~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~  185 (247)
T 2ff7_A          110 MS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM  185 (247)
T ss_dssp             CC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHH
T ss_pred             CC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            12    234667777788765443221      13457899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.|++++ +|+|||+++|++. .+ ..||++++|++|++++.|++++
T Consensus       186 ~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~  229 (247)
T 2ff7_A          186 RNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKE  229 (247)
T ss_dssp             HHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence            9999995 5999999999975 44 4599999999999999987654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=3.2e-38  Score=323.15  Aligned_cols=179  Identities=25%  Similarity=0.376  Sum_probs=147.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|.++...     +++++||+|++.+++ .||+||+.+.....    
T Consensus        51 ~G~nGsGKSTLlk~l~Gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----  120 (271)
T 2ixe_A           51 VGPNGSGKSTVAALLQNLYQPT-----GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----  120 (271)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----
Confidence            5999999999999999999987     89999999987542     235999999998887 59999998853211    


Q ss_pred             CCHHH-----HHHHHHHHHHHc--CCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEE-----RDEYVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~-----~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      ...++     ....++++++.+  ||.+..     ++.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~-----~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i  195 (271)
T 2ixe_A          121 PTMEEITAVAMESGAHDFISGFPQGYDTEV-----GETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV  195 (271)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHSTTGGGSBC-----CGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred             ChHHHHHHHHHHHhHHHHHHhhhcchhhhh-----cCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence            11111     122356778877  664433     345778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++.|+++++ +|+|||+++|++. .+. .||++++|++|++++.|++++
T Consensus       196 ~~~l~~~~~~~g~tviivtHd~~-~~~-~~d~v~~l~~G~i~~~g~~~~  242 (271)
T 2ixe_A          196 QRLLYESPEWASRTVLLITQQLS-LAE-RAHHILFLKEGSVCEQGTHLQ  242 (271)
T ss_dssp             HHHHHHCTTTTTSEEEEECSCHH-HHT-TCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHhhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEECCHHH
Confidence            999999864 5899999999975 444 599999999999999887654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=5.6e-38  Score=310.28  Aligned_cols=170  Identities=22%  Similarity=0.306  Sum_probs=144.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|.++...+++++||+|++.+++.+||+||+.+....+.. .   .+
T Consensus        41 iG~NGsGKSTLlk~l~Gl~~p~-----~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~  111 (214)
T 1sgw_A           41 HGPNGIGKTTLLKTISTYLKPL-----KGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN  111 (214)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH
Confidence            5999999999999999999887     8999999988753345699999999999999999999987654311 1   11


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH  160 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~  160 (607)
                       +++++++++.+||.+.      ++++.+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+
T Consensus       112 -~~~~~~~l~~~gl~~~------~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~  184 (214)
T 1sgw_A          112 -KNEIMDALESVEVLDL------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG  184 (214)
T ss_dssp             -HHHHHHHHHHTTCCCT------TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHS
T ss_pred             -HHHHHHHHHHcCCCcC------CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence             3568889999999644      446778999999999999999999999999999999999999999999999987799


Q ss_pred             eEEEEecCChhHHHhhhcceeeecCCee
Q 007344          161 TVICSIHQPRGSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       161 tvi~~~H~p~~~i~~~~D~v~lL~~G~i  188 (607)
                      |||++||++. .+...+|+++++ +|++
T Consensus       185 tiiivtHd~~-~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          185 IVIISSREEL-SYCDVNENLHKY-STKI  210 (214)
T ss_dssp             EEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence            9999999975 567778887766 4443

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=1.8e-37  Score=322.07  Aligned_cols=177  Identities=26%  Similarity=0.423  Sum_probs=146.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++|.++...     ++++|||+|++.+|+ .||+||+.++...     
T Consensus        86 vG~sGsGKSTLl~ll~gl~~p~-----~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----  154 (306)
T 3nh6_A           86 VGPSGAGKSTILRLLFRFYDIS-----SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----  154 (306)
T ss_dssp             ESSSCHHHHHHHHHHTTSSCCS-----EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----
T ss_pred             ECCCCchHHHHHHHHHcCCCCC-----CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----
Confidence            6999999999999999999987     89999999998654     245999999999986 5999999886421     


Q ss_pred             CCHHHHHHHHHHHHHHcCCCc-------cccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVS-------CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      ...+    .++++++..++.+       -.++.++ +...+|||||||||+|||||+.+|+||||||||+|||+.++..+
T Consensus       155 ~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i  229 (306)
T 3nh6_A          155 AGND----EVEAAAQAAGIHDAIMAFPEGYRTQVG-ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI  229 (306)
T ss_dssp             CCHH----HHHHHHHHHTCHHHHHHSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHH
T ss_pred             CCHH----HHHHHHHHhCcHHHHHhccchhhhHhc-CCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence            2222    2344444444432       2345554 35778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++.+ ++|+|+++|+++ .+.. ||+|++|++|++++.|++++
T Consensus       230 ~~~l~~l~~-~~Tvi~itH~l~-~~~~-aD~i~vl~~G~iv~~G~~~e  274 (306)
T 3nh6_A          230 QASLAKVCA-NRTTIVVAHRLS-TVVN-ADQILVIKDGCIVERGRHEA  274 (306)
T ss_dssp             HHHHHHHHT-TSEEEEECCSHH-HHHT-CSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHcC-CCEEEEEEcChH-HHHc-CCEEEEEECCEEEEECCHHH
Confidence            999999864 789999999975 4554 99999999999999998765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=9.4e-38  Score=314.80  Aligned_cols=179  Identities=26%  Similarity=0.425  Sum_probs=150.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|.++...     +++++||+|++.+++ .||+||+.+...   + .
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~  103 (243)
T 1mv5_A           34 AGPSGGGKSTIFSLLERFYQPT-----AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-D  103 (243)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCS-----BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-C
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-C
Confidence            5999999999999999999887     89999999987432     345999999998887 499999987521   1 1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccc------cCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNV------GDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~v------g~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ..    +++++++++.+++.+..+...      -++.++.|||||||||+|||+|+.+|++|+|||||+|||+.++..++
T Consensus       104 ~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~  179 (243)
T 1mv5_A          104 YT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ  179 (243)
T ss_dssp             SC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHH
T ss_pred             CC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence            22    234678889999977655431      13457899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.|++++ +|+|||+++|++. .+ ..||++++|++|++++.|++++
T Consensus       180 ~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~  223 (243)
T 1mv5_A          180 KALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNE  223 (243)
T ss_dssp             HHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHH
T ss_pred             HHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHH
Confidence            9999997 6999999999975 44 4599999999999998887654

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=3.2e-37  Score=314.13  Aligned_cols=172  Identities=23%  Similarity=0.317  Sum_probs=148.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC--ccceEE-EEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--KAYKFA-YVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~--~~~~i~-yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|+|++ |+     +|+|.++|.++..  .+++++ ||+|++.+  .+||+||+.+....+   .. 
T Consensus        36 ~G~NGsGKSTLlk~l~Gl~-p~-----~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~-  103 (263)
T 2pjz_A           36 LGPNGSGKTTLLRAISGLL-PY-----SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL-  103 (263)
T ss_dssp             ECCTTSSHHHHHHHHTTSS-CC-----EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC-
T ss_pred             ECCCCCCHHHHHHHHhCCC-CC-----CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch-
Confidence            5999999999999999999 87     8999999987642  234699 99999887  789999999876543   11 


Q ss_pred             HHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           78 VEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                         .+++++++++.+||. +..+     +++++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus       104 ---~~~~~~~~l~~~gl~~~~~~-----~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~  175 (263)
T 2pjz_A          104 ---DRDLFLEMLKALKLGEEILR-----RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG  175 (263)
T ss_dssp             ---CHHHHHHHHHHTTCCGGGGG-----SBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC
T ss_pred             ---HHHHHHHHHHHcCCChhHhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc
Confidence               134688899999996 5544     4567899999999999999999999999999999999999999999999985


Q ss_pred             hcCCeEEEEecCChhHHHhhhc-ceeeecCCeeeeeCCCCC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFD-DIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D-~v~lL~~G~iv~~G~~~~  196 (607)
                      +   |||++||++. .+...|| ++++|++|++++.|++++
T Consensus       176 ~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~  212 (263)
T 2pjz_A          176 K---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSE  212 (263)
T ss_dssp             S---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHH
T ss_pred             C---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHH
Confidence            4   9999999964 5678899 999999999999987655

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=1.3e-36  Score=309.35  Aligned_cols=176  Identities=27%  Similarity=0.379  Sum_probs=144.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||||+|+|++++      +|+|.++|.++...     +++++||+|++.+++ .||+||+.++..     .
T Consensus        52 ~G~nGsGKSTLl~~l~Gl~~~------~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~  119 (260)
T 2ghi_A           52 VGHTGSGKSTIAKLLYRFYDA------EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----D  119 (260)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCC------EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----T
T ss_pred             ECCCCCCHHHHHHHHhccCCC------CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----C
Confidence            599999999999999999863      69999999987542     245999999998886 599999987421     1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCcc-------ccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSC-------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      ...    +.+.++++.+++.+.       .|+.++ +++..|||||||||+|||+|+.+|++|+|||||+|||+.++..+
T Consensus       120 ~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i  194 (260)
T 2ghi_A          120 ATD----EEVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLF  194 (260)
T ss_dssp             CCH----HHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHH
T ss_pred             CCH----HHHHHHHHHhCCHHHHHhcccccccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence            122    235566666666432       333333 45789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++.|+++++ |+|||+++|++. .+ ..||++++|++|+++..|++++
T Consensus       195 ~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~  239 (260)
T 2ghi_A          195 QKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGTHKD  239 (260)
T ss_dssp             HHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence            999999965 899999999975 34 4599999999999999887654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=6.2e-36  Score=298.89  Aligned_cols=168  Identities=24%  Similarity=0.377  Sum_probs=135.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|        +++||+|++.+++. ||+||+.++..      .... 
T Consensus        40 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g--------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~-   98 (229)
T 2pze_A           40 AGSTGAGKTSLLMMIMGELEPS-----EGKIKHSG--------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY-   98 (229)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCS-----EEEEEECS--------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH-
T ss_pred             ECCCCCCHHHHHHHHhCCCcCC-----ccEEEECC--------EEEEEecCCcccCC-CHHHHhhccCC------cChH-
Confidence            5999999999999999999987     89999998        49999999998886 99999987531      1111 


Q ss_pred             HHHHHHHHHHHcCCCccc-------cccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-H
Q 007344           81 RDEYVNSLLFKLGLVSCA-------DSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA-L  152 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~-------d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~-L  152 (607)
                         ++++.++.+++.+..       ++.++ +.+..|||||||||+|||+|+.+|++++|||||+|||+.++..+++. +
T Consensus        99 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~  174 (229)
T 2pze_A           99 ---RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV  174 (229)
T ss_dssp             ---HHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCC
T ss_pred             ---HHHHHHHHhCcHHHHHhCccccccccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHH
Confidence               123344444543222       22222 34689999999999999999999999999999999999999999997 4


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++. +|+|||+++|++. .+. .||++++|++|++++.|++++
T Consensus       175 ~~~~-~~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~  215 (229)
T 2pze_A          175 CKLM-ANKTRILVTSKME-HLK-KADKILILHEGSSYFYGTFSE  215 (229)
T ss_dssp             CCCT-TTSEEEEECCCHH-HHH-HCSEEEEEETTEEEEEECHHH
T ss_pred             HHhh-CCCEEEEEcCChH-HHH-hCCEEEEEECCEEEEECCHHH
Confidence            5654 4899999999974 454 599999999999999987654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=5.8e-36  Score=300.61  Aligned_cols=171  Identities=25%  Similarity=0.409  Sum_probs=134.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|        +++||+|++.+ +.+||+||+.+....      ..+.
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g--------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~   96 (237)
T 2cbz_A           37 VGQVGCGKSSLLSALLAEMDKV-----EGHVAIKG--------SVAYVPQQAWI-QNDSLRENILFGCQL------EEPY   96 (237)
T ss_dssp             ECSTTSSHHHHHHHHTTCSEEE-----EEEEEECS--------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTTH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CceEEECC--------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHHH
Confidence            5999999999999999999886     89999998        49999999865 578999999875321      1111


Q ss_pred             HHHHHHH---HHHHcCCCcc-ccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH---
Q 007344           81 RDEYVNS---LLFKLGLVSC-ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR---  153 (607)
Q Consensus        81 ~~~~v~~---~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~---  153 (607)
                      . +.+.+   +.+.+++.+. .++.+ ++++.+|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+   
T Consensus        97 ~-~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~  174 (237)
T 2cbz_A           97 Y-RSVIQACALLPDLEILPSGDRTEI-GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPK  174 (237)
T ss_dssp             H-HHHHHHTTCHHHHTTSTTGGGSEE-STTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTT
T ss_pred             H-HHHHHHHhhHHHHHhccccccccc-cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHH
Confidence            1 11111   2223333211 11222 35688999999999999999999999999999999999999999999995   


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++ +|+|||+++|++.. + ..||++++|++|++++.|++++
T Consensus       175 ~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~  214 (237)
T 2cbz_A          175 GML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGSYQE  214 (237)
T ss_dssp             STT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEECHHH
T ss_pred             hhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCCHHH
Confidence            443 58999999999864 4 4699999999999999887654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=324.20  Aligned_cols=176  Identities=24%  Similarity=0.336  Sum_probs=145.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||||+|+|+++ +     +|+|.++|+++...     ++.+|||+|+..+|+ +||+||+.+..      .
T Consensus        53 lGpsGsGKSTLLr~iaGl~~-~-----~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~  119 (390)
T 3gd7_A           53 LGRTGSGKSTLLSAFLRLLN-T-----EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------A  119 (390)
T ss_dssp             EESTTSSHHHHHHHHHTCSE-E-----EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------C
T ss_pred             ECCCCChHHHHHHHHhCCCC-C-----CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------c
Confidence            59999999999999999986 5     79999999987653     246999999999998 59999986321      1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccC------CcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGD------AKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~------~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ..    ++++.++++.++|.+..+.....      .....|||||||||+|||||+.+|++|||||||||||+.++.++.
T Consensus       120 ~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~  195 (390)
T 3gd7_A          120 HS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIR  195 (390)
T ss_dssp             SC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHH
T ss_pred             cC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence            12    34577899999997655433211      122339999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       150 ~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.|+++. +|+|+|+++|+..  ....||||++|++|+++..|++++
T Consensus       196 ~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~g~~~e  239 (390)
T 3gd7_A          196 RTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEENKVRQYDSILE  239 (390)
T ss_dssp             HHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEESSHHH
T ss_pred             HHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence            9999864 4799999999963  345699999999999999998765

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=9e-35  Score=328.04  Aligned_cols=178  Identities=26%  Similarity=0.436  Sum_probs=149.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|+++|+     +|+|.+||.++.+.     ++++|||+|++.+++. ||+||+.++..   + .
T Consensus       375 vG~sGsGKSTll~~l~g~~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~  444 (582)
T 3b5x_A          375 VGRSGSGKSTIANLFTRFYDVD-----SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-E  444 (582)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-C
Confidence            6999999999999999999987     89999999987542     3469999999999985 99999988531   1 1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCcc-------ccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSC-------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+    +++++++++.+++.+.       .||.+|+ ...+||||||||++|||||+++|++|+|||||+|||+.++..+
T Consensus       445 ~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i  519 (582)
T 3b5x_A          445 YT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAI  519 (582)
T ss_pred             CC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence            22    2346667777776533       3455554 5789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++.+ |+|+|+++|+++ .+ ..||++++|++|++++.|++++
T Consensus       520 ~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~  564 (582)
T 3b5x_A          520 QAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHAD  564 (582)
T ss_pred             HHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence            999999865 899999999975 44 4699999999999999998765

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=1e-34  Score=327.55  Aligned_cols=178  Identities=24%  Similarity=0.362  Sum_probs=150.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|+++|+     +|+|.+||.++.+.     ++++|||+|++.+++. ||+||+.++..   + .
T Consensus       375 vG~sGsGKSTLl~~l~g~~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~  444 (582)
T 3b60_A          375 VGRSGSGKSTIASLITRFYDID-----EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-E  444 (582)
T ss_dssp             EECTTSSHHHHHHHHTTTTCCS-----EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-C
T ss_pred             ECCCCCCHHHHHHHHhhccCCC-----CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-C
Confidence            5999999999999999999987     89999999998653     2459999999999985 99999988531   1 1


Q ss_pred             CCHHHHHHHHHHHHHHcCCCc-------cccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVS-------CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.    ++++++++.+++.+       -.|+.+|+ ...+||||||||++|||||+++|++++|||||||||+.++..+
T Consensus       445 ~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i  519 (582)
T 3b60_A          445 YSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI  519 (582)
T ss_dssp             CCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHH
T ss_pred             CCH----HHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHH
Confidence            222    34666777777653       23555654 5789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.++++.+ |+|+|+++|+++ .+ ..||++++|++|++++.|++++
T Consensus       520 ~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~  564 (582)
T 3b60_A          520 QAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSE  564 (582)
T ss_dssp             HHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHH
Confidence            999999875 899999999975 34 4699999999999999998655

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.3e-34  Score=326.66  Aligned_cols=177  Identities=28%  Similarity=0.424  Sum_probs=145.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|+++|+     +|+|.+||.++.+.     +++++||+|++.+++. ||+||+.++..     .
T Consensus       375 vG~sGsGKSTll~~l~g~~~~~-----~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~  443 (587)
T 3qf4_A          375 LGETGSGKSTLMNLIPRLIDPE-----RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----D  443 (587)
T ss_dssp             ECSSSSSHHHHHHTTTTSSCCS-----EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----S
T ss_pred             ECCCCCCHHHHHHHHhCCccCC-----CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----C
Confidence            5999999999999999999987     89999999988653     2459999999999976 99999987531     1


Q ss_pred             CCHHHHHHHHHHHHHHcCC-------CccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++    +.+.++..++       .+-.|+.+++ ...+||||||||++|||||+++|++|+||||||+||+.++..+
T Consensus       444 ~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i  518 (587)
T 3qf4_A          444 ATDDE----IVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI  518 (587)
T ss_dssp             CCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHH
T ss_pred             CCHHH----HHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence            23322    2223333332       2234566654 6789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++. +|+|+|+++|+++ .+ ..||+|++|++|++++.|++++
T Consensus       519 ~~~l~~~~-~~~tvi~itH~l~-~~-~~~d~i~vl~~G~i~~~g~~~e  563 (587)
T 3qf4_A          519 LDGLKRYT-KGCTTFIITQKIP-TA-LLADKILVLHEGKVAGFGTHKE  563 (587)
T ss_dssp             HHHHHHHS-TTCEEEEEESCHH-HH-TTSSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHhC-CCCEEEEEecChH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence            99999985 5899999999975 34 5799999999999999998766

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=1.4e-34  Score=326.13  Aligned_cols=177  Identities=29%  Similarity=0.441  Sum_probs=147.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|+++|+     +|+|.+||.++++.     ++++|||+|++.+++. ||+||+.++..     .
T Consensus       373 vG~sGsGKSTll~~l~g~~~p~-----~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~  441 (578)
T 4a82_A          373 VGMSGGGKSTLINLIPRFYDVT-----SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----T  441 (578)
T ss_dssp             ECSTTSSHHHHHTTTTTSSCCS-----EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----S
T ss_pred             ECCCCChHHHHHHHHhcCCCCC-----CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----C
Confidence            5999999999999999999987     89999999988653     2459999999999987 99999987521     1


Q ss_pred             CCHHHHHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.+    .+.+.++..++.       +-.||.+|+ ...+||||||||++|||||+++|++++|||||||||+.++..+
T Consensus       442 ~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i  516 (578)
T 4a82_A          442 ATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII  516 (578)
T ss_dssp             CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHH
T ss_pred             CCHH----HHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence            2222    244444444432       334566654 5778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.++++. +|+|+|+++|+++. + ..||++++|++|++++.|++++
T Consensus       517 ~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~e  561 (578)
T 4a82_A          517 QEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETGTHRE  561 (578)
T ss_dssp             HHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHH
Confidence            99999985 47899999999863 4 4599999999999999998765

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.4e-34  Score=327.23  Aligned_cols=177  Identities=25%  Similarity=0.378  Sum_probs=145.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|+++|+     +|+|.+||.++.+.     ++++|||+|++.+++. ||+||+.++..     .
T Consensus       387 vG~sGsGKSTll~~l~g~~~p~-----~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~  455 (598)
T 3qf4_B          387 VGPTGSGKTTIVNLLMRFYDVD-----RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNP-----G  455 (598)
T ss_dssp             ECCTTSSTTHHHHHHTTSSCCS-----EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSST-----T
T ss_pred             ECCCCCcHHHHHHHHhcCcCCC-----CeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCC-----C
Confidence            5999999999999999999987     89999999998653     2459999999999875 99999987521     1


Q ss_pred             CCHHHHHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.+    .+.+.++..++.       +-.|+.+|+ ...+||||||||++|||||+++|++|+|||||||||+.++..+
T Consensus       456 ~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i  530 (598)
T 3qf4_B          456 ATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI  530 (598)
T ss_dssp             CCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHH
T ss_pred             CCHH----HHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence            1222    233444444432       233455543 4578999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++. +|+|+|+++|+++ .+. .||+|++|++|++++.|++++
T Consensus       531 ~~~l~~~~-~~~t~i~itH~l~-~~~-~~d~i~~l~~G~i~~~g~~~~  575 (598)
T 3qf4_B          531 QAAMWKLM-EGKTSIIIAHRLN-TIK-NADLIIVLRDGEIVEMGKHDE  575 (598)
T ss_dssp             HHHHHHHH-TTSEEEEESCCTT-HHH-HCSEEEEECSSSEEECSCHHH
T ss_pred             HHHHHHHc-CCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHH
Confidence            99999985 5899999999986 444 499999999999999998765

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=3.8e-34  Score=295.34  Aligned_cols=167  Identities=24%  Similarity=0.376  Sum_probs=132.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|        +++||+|++.+++. ||+||+. ..  .    .... 
T Consensus        70 ~G~NGsGKSTLlk~l~Gl~~p~-----~G~I~~~g--------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~~-  127 (290)
T 2bbs_A           70 AGSTGAGKTSLLMMIMGELEPS-----EGKIKHSG--------RISFCSQNSWIMPG-TIKENII-GV--S----YDEY-  127 (290)
T ss_dssp             EESTTSSHHHHHHHHTTSSCEE-----EEEEECCS--------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCHH-
T ss_pred             ECCCCCcHHHHHHHHhcCCCCC-----CcEEEECC--------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cchH-
Confidence            5999999999999999999886     89999998        49999999988885 9999997 32  1    1111 


Q ss_pred             HHHHHHHHHHHcCCCccc-------cccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH-
Q 007344           81 RDEYVNSLLFKLGLVSCA-------DSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL-  152 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~-------d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L-  152 (607)
                         .+++.++.+++.+..       ++.++ +.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.+ 
T Consensus       128 ---~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll  203 (290)
T 2bbs_A          128 ---RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV  203 (290)
T ss_dssp             ---HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCC
T ss_pred             ---HHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence               233444555553221       12222 346799999999999999999999999999999999999999999974 


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++++ +|+|||+++|++. .+ ..||++++|++|++++.|++++
T Consensus       204 ~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~~~  244 (290)
T 2bbs_A          204 CKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSE  244 (290)
T ss_dssp             CCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECHHH
T ss_pred             HHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCHHH
Confidence            5554 4899999999974 44 4599999999999999998755

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.97  E-value=2.1e-32  Score=333.50  Aligned_cols=179  Identities=26%  Similarity=0.435  Sum_probs=151.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|.|+++|+     +|+|.+||.++++.     +++++||||++.+|+. |++|||.|+..   |..
T Consensus      1111 VG~SGsGKSTL~~lL~rl~~p~-----~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~ 1181 (1321)
T 4f4c_A         1111 VGPSGCGKSTVVALLERFYDTL-----GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSS 1181 (1321)
T ss_dssp             ECSTTSSTTSHHHHHTTSSCCS-----SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTT
T ss_pred             ECCCCChHHHHHHHHhcCccCC-----CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCC
Confidence            5999999999999999999987     89999999998764     3569999999999987 99999987632   223


Q ss_pred             CCHHHHHHHHHHHHHHcCC-------CccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++    +.++++..++       .+-.||.+|+ ...+||||||||++|||||+++|+||+||||||+||+.+...|
T Consensus      1182 ~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~I 1256 (1321)
T 4f4c_A         1182 VTMAQ----VEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV 1256 (1321)
T ss_dssp             SCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHH
T ss_pred             CCHHH----HHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHH
Confidence            34433    4445555443       4556888886 5678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++. +|+|+|+++|.++  ....||+|++|++|++++.|++++
T Consensus      1257 q~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~G~IvE~Gth~e 1301 (1321)
T 4f4c_A         1257 QEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVSNGTIIEKGTHTQ 1301 (1321)
T ss_dssp             HHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEESSSSEEEEECHHH
T ss_pred             HHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence            99998865 4899999999975  345689999999999999999876

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.97  E-value=1.5e-31  Score=301.59  Aligned_cols=170  Identities=29%  Similarity=0.375  Sum_probs=145.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||||+|+|+++|+     +|+|.+        ..++||++|+....+.+||.|++.......       ..
T Consensus       388 ~G~NGsGKSTLlk~l~Gl~~p~-----~G~I~~--------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~  447 (607)
T 3bk7_A          388 VGPNGIGKTTFVKMLAGVEEPT-----EGKVEW--------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LN  447 (607)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCCS-----BSCCCC--------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----ceEEEE--------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CC
Confidence            5999999999999999999887     788875        246999999988778899999887641110       01


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g  159 (607)
                      ..++++++++.+||.+.++     +.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++ ++|
T Consensus       448 ~~~~~~~~l~~~~l~~~~~-----~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g  522 (607)
T 3bk7_A          448 SNFYKTELLKPLGIIDLYD-----RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE  522 (607)
T ss_dssp             CHHHHHHTHHHHTCTTTTT-----SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCchHhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence            1356788999999975554     4567899999999999999999999999999999999999999999999997 569


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecC--CeeeeeCCCCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTE--GKLVYAGPARD  196 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~--G~iv~~G~~~~  196 (607)
                      +|||+++||. ..+..+|||+++|++  |+++..|++++
T Consensus       523 ~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~  560 (607)
T 3bk7_A          523 KTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMG  560 (607)
T ss_dssp             CEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHH
Confidence            9999999996 577888999999985  88888999877

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.97  E-value=1.6e-31  Score=298.19  Aligned_cols=170  Identities=31%  Similarity=0.389  Sum_probs=144.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||||+|+|+.+++     +|+|.+        ..++|||+|+....+.+||.|++........       .
T Consensus       318 ~G~NGsGKSTLlk~l~Gl~~p~-----~G~i~~--------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~  377 (538)
T 1yqt_A          318 VGPNGIGKTTFVKMLAGVEEPT-----EGKIEW--------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------N  377 (538)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCCS-----BCCCCC--------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------T
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CeEEEE--------CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------C
Confidence            5999999999999999999887     788875        2369999999877788999998865411110       0


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g  159 (607)
                      ..++++++++.+|+.+..     ++.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++ +.|
T Consensus       378 ~~~~~~~~l~~~~l~~~~-----~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g  452 (538)
T 1yqt_A          378 SNFYKTELLKPLGIIDLY-----DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE  452 (538)
T ss_dssp             CHHHHHHTTTTTTCGGGT-----TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChhhh-----cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence            124578899999996544     44677899999999999999999999999999999999999999999999997 569


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecC--CeeeeeCCCCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTE--GKLVYAGPARD  196 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~--G~iv~~G~~~~  196 (607)
                      .|||+++||. ..+..+|||+++|++  |+++..|++++
T Consensus       453 ~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~  490 (538)
T 1yqt_A          453 KTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMG  490 (538)
T ss_dssp             CEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHH
Confidence            9999999995 578889999999985  78888999877

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.97  E-value=1.3e-31  Score=326.59  Aligned_cols=177  Identities=30%  Similarity=0.417  Sum_probs=151.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc-----ceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA-----YKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~-----~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|.|.+++.     +|+|.+||.++++..     +++|||+|++.+|+. |++||+.|+..     .
T Consensus       450 vG~sGsGKSTll~ll~~~~~~~-----~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~  518 (1321)
T 4f4c_A          450 VGSSGCGKSTIISLLLRYYDVL-----KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-----G  518 (1321)
T ss_dssp             EECSSSCHHHHHHHHTTSSCCS-----EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----T
T ss_pred             EecCCCcHHHHHHHhccccccc-----cCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc-----c
Confidence            5999999999999999999987     899999999987652     469999999999986 99999998631     2


Q ss_pred             CCHHHHHHHHHHHHHHcC-------CCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLG-------LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++    +.++++..+       |.+-.||.+|+ ....||||||||++||||++++|+||+||||||+||+.+...+
T Consensus       519 ~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i  593 (1321)
T 4f4c_A          519 ITREE----MVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIV  593 (1321)
T ss_dssp             CCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHH
T ss_pred             chHHH----HHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHH
Confidence            33333    334444333       34566899986 5678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++.+ |+|+|+++|+++  ....+|+|++|++|++++.|+.++
T Consensus       594 ~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~e  638 (1321)
T 4f4c_A          594 QQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRA  638 (1321)
T ss_dssp             HHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHH
Confidence            999998764 899999999975  456799999999999999998766

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.97  E-value=4.3e-31  Score=294.26  Aligned_cols=172  Identities=23%  Similarity=0.303  Sum_probs=142.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++|       ..++|++|+......+||+|++.+.....    ..  .
T Consensus       300 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~~-------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~--~  361 (538)
T 3ozx_A          300 LGPNGIGKTTFARILVGEITAD-----EGSVTPEK-------QILSYKPQRIFPNYDGTVQQYLENASKDA----LS--T  361 (538)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCS-----BCCEESSC-------CCEEEECSSCCCCCSSBHHHHHHHHCSST----TC--T
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECC-------eeeEeechhcccccCCCHHHHHHHhhhhc----cc--h
Confidence            5999999999999999999987     89998764       35899999877666889999998742211    11  1


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g  159 (607)
                      ....++++++.+||.+..+     +.+..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|
T Consensus       362 ~~~~~~~~l~~~~l~~~~~-----~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g  436 (538)
T 3ozx_A          362 SSWFFEEVTKRLNLHRLLE-----SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK  436 (538)
T ss_dssp             TSHHHHHTTTTTTGGGCTT-----SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHcCCHHHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence            1235788899999965544     46778999999999999999999999999999999999999999999999975 58


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecC--CeeeeeCCCCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTE--GKLVYAGPARD  196 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~--G~iv~~G~~~~  196 (607)
                      .|||+++||. .++..+||||++|++  |.....+++.+
T Consensus       437 ~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~  474 (538)
T 3ozx_A          437 AVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVT  474 (538)
T ss_dssp             CEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHH
Confidence            9999999996 578889999999986  55555666544

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.97  E-value=2.2e-31  Score=323.68  Aligned_cols=179  Identities=27%  Similarity=0.426  Sum_probs=147.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|.++|+     +|+|.++|.++...     ++++|||+|++.+++. ||+||+.++..     .
T Consensus       422 vG~sGsGKSTl~~ll~g~~~~~-----~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~  490 (1284)
T 3g5u_A          422 VGNSGCGKSTTVQLMQRLYDPL-----DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----D  490 (1284)
T ss_dssp             ECCSSSSHHHHHHHTTTSSCCS-----EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----S
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----C
Confidence            5999999999999999999987     89999999987653     2459999999999986 99999998742     2


Q ss_pred             CCHHHHHHHH-----HHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           76 LSVEERDEYV-----NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        76 ~~~~~~~~~v-----~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      .+.++..+..     .+.++.+  .+..||.+|+ ...+||||||||++|||||+++|+||+||||||+||+.+...+.+
T Consensus       491 ~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~  567 (1284)
T 3g5u_A          491 VTMDEIEKAVKEANAYDFIMKL--PHQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA  567 (1284)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHS--TTGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCcHHHHHhc--cccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence            2333332222     2233333  3345677765 577899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .++++. +|+|+|+++|+++ .+ ..+|+|++|++|++++.|+.++
T Consensus       568 ~l~~~~-~~~t~i~itH~l~-~i-~~~d~i~vl~~G~i~~~g~~~~  610 (1284)
T 3g5u_A          568 ALDKAR-EGRTTIVIAHRLS-TV-RNADVIAGFDGGVIVEQGNHDE  610 (1284)
T ss_dssp             HHHHHH-TTSEEEEECSCHH-HH-TTCSEEEECSSSCCCCEECHHH
T ss_pred             HHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHH
Confidence            998865 5899999999964 45 4599999999999999998765

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.97  E-value=3.4e-31  Score=322.07  Aligned_cols=179  Identities=28%  Similarity=0.431  Sum_probs=147.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|+++|+     +|+|.+||.+++..     +++++||+|++.+++ .||+||+.++...   ..
T Consensus      1065 vG~sGsGKSTl~~~l~g~~~p~-----~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~ 1135 (1284)
T 3g5u_A         1065 VGSSGCGKSTVVQLLERFYDPM-----AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RV 1135 (1284)
T ss_dssp             ECSSSTTHHHHHHHHTTSSCCS-----EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CC
T ss_pred             ECCCCCCHHHHHHHHhcCcCCC-----CCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC---CC
Confidence            5999999999999999999987     89999999988653     346999999998886 5999999875321   12


Q ss_pred             CCHHHHHHHHHHHHHHcC-------CCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLG-------LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++..    +.++..+       +.+..||.+|+ ....|||||||||+|||+|+++|+||+|||||+|||+.+...+
T Consensus      1136 ~~~~~i~----~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A         1136 VSYEEIV----RAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210 (1284)
T ss_dssp             CCHHHHH----HHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHH
T ss_pred             CCHHHHH----HHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            2333332    2233222       34456777775 5778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.|+++ .+|+|+|+++|+++ .+ ..||||++|++|++++.|++++
T Consensus      1211 ~~~l~~~-~~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~ 1255 (1284)
T 3g5u_A         1211 QEALDKA-REGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQ 1255 (1284)
T ss_dssp             HHHHHHH-SSSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHH
T ss_pred             HHHHHHh-CCCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHH
Confidence            9999885 45899999999976 45 5599999999999999998765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-30  Score=292.53  Aligned_cols=171  Identities=23%  Similarity=0.280  Sum_probs=142.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||||+|+|+++|+     +|+.      .  ....++|++|+.......||+|++...  .+. ....   
T Consensus       384 iG~NGsGKSTLlk~l~Gl~~p~-----~G~~------~--~~~~i~~~~q~~~~~~~~tv~e~~~~~--~~~-~~~~---  444 (608)
T 3j16_B          384 MGENGTGKTTLIKLLAGALKPD-----EGQD------I--PKLNVSMKPQKIAPKFPGTVRQLFFKK--IRG-QFLN---  444 (608)
T ss_dssp             ESCTTSSHHHHHHHHHTSSCCS-----BCCC------C--CSCCEEEECSSCCCCCCSBHHHHHHHH--CSS-TTTS---
T ss_pred             ECCCCCcHHHHHHHHhcCCCCC-----CCcC------c--cCCcEEEecccccccCCccHHHHHHHH--hhc-cccc---
Confidence            5999999999999999999987     6652      1  134599999997666667999987542  221 1111   


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g  159 (607)
                       .+.++++++.++|.+.++     +.+..|||||||||+||++|+.+|++|+|||||+|||+.++..++++|++++ +.|
T Consensus       445 -~~~~~~~l~~l~l~~~~~-----~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g  518 (608)
T 3j16_B          445 -PQFQTDVVKPLRIDDIID-----QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK  518 (608)
T ss_dssp             -HHHHHHTHHHHTSTTTSS-----SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence             235678999999976554     4677899999999999999999999999999999999999999999999986 569


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecC--CeeeeeCCCCCc
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTE--GKLVYAGPARDE  197 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~--G~iv~~G~~~~~  197 (607)
                      .|||+++||. .++..++||+++|++  |+++..|++++.
T Consensus       519 ~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~  557 (608)
T 3j16_B          519 KTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESL  557 (608)
T ss_dssp             CEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence            9999999996 578888999999986  999999999873

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.96  E-value=4.1e-30  Score=286.84  Aligned_cols=164  Identities=25%  Similarity=0.352  Sum_probs=132.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEE---------EECCeeCCC-------ccceEEEEccCCCCCCC---CCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLL---------EVNGKPSSN-------KAYKFAYVRQEDLFFSQ---LTVR   61 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I---------~~~G~~~~~-------~~~~i~yv~Q~~~l~~~---lTV~   61 (607)
                      +||||||||||||+|+|.++|+     +|++         .++|.+...       ....+++++|+...++.   .||.
T Consensus        53 vG~NGaGKSTLlk~l~Gl~~p~-----~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~  127 (538)
T 1yqt_A           53 VGPNGTGKSTAVKILAGQLIPN-----LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI  127 (538)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCCC-----TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHH
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHH
Confidence            6999999999999999999887     5653         356654321       12358899987543332   3899


Q ss_pred             HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 007344           62 ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLD  141 (607)
Q Consensus        62 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD  141 (607)
                      |++....            ..++++++++.+||.+..+     +.+.+|||||||||+||++|+.+|++|||||||+|||
T Consensus       128 e~~~~~~------------~~~~~~~~l~~lgl~~~~~-----~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD  190 (538)
T 1yqt_A          128 ELLKKAD------------ETGKLEEVVKALELENVLE-----REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLD  190 (538)
T ss_dssp             HHHHHHC------------SSSCHHHHHHHTTCTTTTT-----SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred             HHHhhhh------------HHHHHHHHHHHcCCChhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence            9875310            1134788999999965544     4567899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344          142 AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       142 ~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  187 (607)
                      +.++..+++.|++++++|.|||+++|+. ..+..+||++++|++|.
T Consensus       191 ~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~~~  235 (538)
T 1yqt_A          191 IRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYGEP  235 (538)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCcc
Confidence            9999999999999988899999999995 57888999999998653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.96  E-value=4e-30  Score=290.06  Aligned_cols=164  Identities=27%  Similarity=0.372  Sum_probs=131.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEE---------EECCeeCCC-------ccceEEEEccCCCCCC---CCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLL---------EVNGKPSSN-------KAYKFAYVRQEDLFFS---QLTVR   61 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I---------~~~G~~~~~-------~~~~i~yv~Q~~~l~~---~lTV~   61 (607)
                      +||||||||||||+|+|+++|+     +|++         .++|.++..       ....+++++|.....+   ..||.
T Consensus       123 iG~NGsGKSTLlkiL~Gll~p~-----~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~  197 (607)
T 3bk7_A          123 VGPNGTGKTTAVKILAGQLIPN-----LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR  197 (607)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCC-----TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHH
T ss_pred             ECCCCChHHHHHHHHhCCCCCC-----CCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHH
Confidence            6999999999999999999887     5654         345654321       1234789988743322   13999


Q ss_pred             HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 007344           62 ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLD  141 (607)
Q Consensus        62 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD  141 (607)
                      |++...      .      ..++++++++.+||.+..|     +.+++|||||||||+||++|+.+|++|||||||+|||
T Consensus       198 e~l~~~------~------~~~~~~~~L~~lgL~~~~~-----~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD  260 (607)
T 3bk7_A          198 ELLKKV------D------EVGKFEEVVKELELENVLD-----RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD  260 (607)
T ss_dssp             HHHHHT------C------CSSCHHHHHHHTTCTTGGG-----SBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCC
T ss_pred             HHhhhh------H------HHHHHHHHHHHcCCCchhC-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence            998531      0      0134778999999976554     4567899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344          142 AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       142 ~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  187 (607)
                      +.++..+++.|++++++|.|||+++|++ ..+..++|++++|+++.
T Consensus       261 ~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~~  305 (607)
T 3bk7_A          261 IRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEP  305 (607)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCCc
Confidence            9999999999999988899999999995 47788899999998653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.96  E-value=2.6e-29  Score=287.92  Aligned_cols=189  Identities=24%  Similarity=0.346  Sum_probs=120.2

Q ss_pred             CCCCCCcHHHHH---------------------HHHHcCcCCCCCC--ccceEEEECCeeCCCc-cceEEEEccCCCC--
Q 007344            1 MGPSGSGKTTLL---------------------NVLAGQLMASPRL--HLSGLLEVNGKPSSNK-AYKFAYVRQEDLF--   54 (607)
Q Consensus         1 lGpsGsGKSTLL---------------------~~LaG~~~~~~~~--~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l--   54 (607)
                      +||||||||||+                     ++++|+..++.+.  ...|.|.++|.+.... ...+|+|+|...+  
T Consensus        50 iGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~~~~~~  129 (670)
T 3ux8_A           50 TGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLR  129 (670)
T ss_dssp             ECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBHHHHTTCC----
T ss_pred             ECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhceeeeechhhhHH
Confidence            699999999998                     8888887765210  1246677877654332 2345666654332  


Q ss_pred             -----------------CCCCCHHHHHHHHHHccCCCCCCH------HHHHHHHHHHHHHcCCCccccccccCCcCCCCC
Q 007344           55 -----------------FSQLTVRETLSLAAELQLPEILSV------EERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS  111 (607)
Q Consensus        55 -----------------~~~lTV~E~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS  111 (607)
                                       ++.+||+||+.+............      ++..++ .++++.+||.+.    ..++++..||
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gL~~~----~~~~~~~~LS  204 (670)
T 3ux8_A          130 LLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR-LGFLQNVGLDYL----TLSRSAGTLS  204 (670)
T ss_dssp             ---------------------CC--------------------------CHHH-HHHHHHTTCTTC----CTTCBGGGSC
T ss_pred             HHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-HHHHHHcCCchh----hhcCCcccCC
Confidence                             456899999987543221110000      011111 245888999643    1244677899


Q ss_pred             HHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------
Q 007344          112 GGEKKRLSLACELIASPS--VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------  183 (607)
Q Consensus       112 GGerqRvsIa~aL~~~p~--illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------  183 (607)
                      |||||||+|||||+.+|+  +|||||||+|||+.++..+++.|++++++|.|||+++|++. .+ ..||++++|      
T Consensus       205 GGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~ii~l~~g~~~  282 (670)
T 3ux8_A          205 GGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-TM-LAADYLIDIGPGAGI  282 (670)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH-HH-HHCSEEEEECSSSGG
T ss_pred             HHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HH-hhCCEEEEecccccc
Confidence            999999999999999998  99999999999999999999999999988999999999975 44 459999999      


Q ss_pred             cCCeeeeeCCCCC
Q 007344          184 TEGKLVYAGPARD  196 (607)
Q Consensus       184 ~~G~iv~~G~~~~  196 (607)
                      ++|++++.|++++
T Consensus       283 ~~G~i~~~g~~~~  295 (670)
T 3ux8_A          283 HGGEVVAAGTPEE  295 (670)
T ss_dssp             GCCSEEEEECHHH
T ss_pred             cCCEEEEecCHHH
Confidence            8999999998765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.95  E-value=7.4e-29  Score=276.22  Aligned_cols=165  Identities=27%  Similarity=0.327  Sum_probs=129.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEE-----------EECCeeCCC-------ccceEEEEccC----CCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLL-----------EVNGKPSSN-------KAYKFAYVRQE----DLFFSQL   58 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I-----------~~~G~~~~~-------~~~~i~yv~Q~----~~l~~~l   58 (607)
                      +||||||||||||+|+|.++|+     +|+|           .++|.++..       ....+..+.|.    +.++. .
T Consensus        31 iGpNGaGKSTLlkiL~Gl~~p~-----~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  104 (538)
T 3ozx_A           31 LGKNGVGKTTVLKILAGEIIPN-----FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLK-G  104 (538)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCC-----TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCC-S
T ss_pred             ECCCCCcHHHHHHHHhcCCCCC-----CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhcc-C
Confidence            6999999999999999999887     6776           566665421       11124444443    33333 3


Q ss_pred             CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 007344           59 TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT  138 (607)
Q Consensus        59 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPts  138 (607)
                      ||+|++....            .+++++++++.+|+.+..|     +.++.|||||||||+||+||+.+|++|+|||||+
T Consensus       105 ~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~-----~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts  167 (538)
T 3ozx_A          105 TVNEILTKID------------ERGKKDEVKELLNMTNLWN-----KDANILSGGGLQRLLVAASLLREADVYIFDQPSS  167 (538)
T ss_dssp             BHHHHHHHHC------------CSSCHHHHHHHTTCGGGTT-----SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred             cHHHHhhcch------------hHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence            8888654210            1134678899999966554     4567899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeee
Q 007344          139 GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVY  190 (607)
Q Consensus       139 GLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~  190 (607)
                      |||+.++..+.+.|+++++ |+|||+++|+. ..+..+||+|++|++|..++
T Consensus       168 ~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~~~  217 (538)
T 3ozx_A          168 YLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESSVY  217 (538)
T ss_dssp             TCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETTTE
T ss_pred             cCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCcccc
Confidence            9999999999999999976 99999999996 57888999999998765443

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.95  E-value=6.7e-28  Score=276.24  Aligned_cols=125  Identities=28%  Similarity=0.419  Sum_probs=104.4

Q ss_pred             CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC---CeEEE
Q 007344           57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP---SVIYA  133 (607)
Q Consensus        57 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p---~illL  133 (607)
                      .+||.||+.+....       .  ..+++.+.++.+||...    ..++++..|||||||||+|||+|+.+|   ++|+|
T Consensus       504 ~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~----~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llll  570 (670)
T 3ux8_A          504 DMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYM----KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYIL  570 (670)
T ss_dssp             TSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTS----BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEE
T ss_pred             hCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchh----hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEE
Confidence            47999999875321       1  12345678888998531    224567899999999999999999887   59999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344          134 DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD  196 (607)
Q Consensus       134 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~  196 (607)
                      ||||+|||+.++..++++|++++++|+|||+++|++. .+ ..||+|++|      ++|++++.|++++
T Consensus       571 DEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~  637 (670)
T 3ux8_A          571 DEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEE  637 (670)
T ss_dssp             ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEECHHH
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEecCHHH
Confidence            9999999999999999999999988999999999975 44 679999999      8999999998765

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.95  E-value=9.4e-28  Score=280.15  Aligned_cols=163  Identities=25%  Similarity=0.347  Sum_probs=133.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-LFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +||||||||||||+|+|           |+|  +|.+... ..+++|++|+. .+++.+||.|++.+  ...   ..   
T Consensus       467 iGpNGsGKSTLLk~Lag-----------G~i--~g~~~~~-~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~---  524 (986)
T 2iw3_A          467 CGPNGCGKSTLMRAIAN-----------GQV--DGFPTQE-ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT---  524 (986)
T ss_dssp             ECSTTSSHHHHHHHHHH-----------TCS--TTCCCTT-TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC---
T ss_pred             ECCCCCCHHHHHHHHhC-----------CCc--CCCcccc-ceeEEEEcccccccccCCcHHHHHHH--hhc---CH---
Confidence            59999999999999995           111  3333211 23478999984 67889999999976  111   11   


Q ss_pred             HHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344           80 ERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~  158 (607)
                        +++++++++.+||. +..+     +++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++   .
T Consensus       525 --~~~v~~~L~~lgL~~~~~~-----~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~  594 (986)
T 2iw3_A          525 --KEAIKDKLIEFGFTDEMIA-----MPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---C  594 (986)
T ss_dssp             --HHHHHHHHHHTTCCHHHHH-----SBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---S
T ss_pred             --HHHHHHHHHHcCCChhhhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---C
Confidence              45688999999994 3333     45678999999999999999999999999999999999999999999988   5


Q ss_pred             CCeEEEEecCChhHHHhhhcceeeecCCeee-eeCCCCC
Q 007344          159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPARD  196 (607)
Q Consensus       159 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv-~~G~~~~  196 (607)
                      |.|||+++|+. ..+...||++++|++|+++ +.|+.++
T Consensus       595 g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e  632 (986)
T 2iw3_A          595 GITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTE  632 (986)
T ss_dssp             CSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHH
T ss_pred             CCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHH
Confidence            89999999995 5788899999999999997 6887654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.95  E-value=4e-28  Score=283.24  Aligned_cols=175  Identities=27%  Similarity=0.403  Sum_probs=133.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCC----CCCCCHHHHHHHHHHcc-----
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLF----FSQLTVRETLSLAAELQ-----   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l----~~~lTV~E~l~~~~~~~-----   71 (607)
                      +||||||||||||+|+|+++|+     +|+|.++|.      .+++|++|+...    ....|++|++.+.....     
T Consensus       705 iGpNGSGKSTLLklLaGll~P~-----sG~I~~~~~------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~  773 (986)
T 2iw3_A          705 IGPNGAGKSTLINVLTGELLPT-----SGEVYTHEN------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRET  773 (986)
T ss_dssp             CSCCCHHHHHHHHHHTTSSCCS-----EEEEEECTT------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTT
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----ceEEEEcCc------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhh
Confidence            6999999999999999999987     899999863      258999997531    22468888876532100     


Q ss_pred             -------CC----------------------------------------------------CCC--------C-------
Q 007344           72 -------LP----------------------------------------------------EIL--------S-------   77 (607)
Q Consensus        72 -------~~----------------------------------------------------~~~--------~-------   77 (607)
                             ..                                                    ...        .       
T Consensus       774 ~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~  853 (986)
T 2iw3_A          774 MDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVES  853 (986)
T ss_dssp             TTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHH
T ss_pred             hhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhh
Confidence                   00                                                    000        0       


Q ss_pred             -------------------HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 007344           78 -------------------VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT  138 (607)
Q Consensus        78 -------------------~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPts  138 (607)
                                         ....+++++++++.+||.+..   ..++++++|||||||||+||++|+.+|++|+|||||+
T Consensus       854 ~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~---~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~  930 (986)
T 2iw3_A          854 HSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI---VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN  930 (986)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH---HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGG
T ss_pred             HhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchh---hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence                               000135688899999995311   0234577899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCC
Q 007344          139 GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP  193 (607)
Q Consensus       139 GLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~  193 (607)
                      |||+.+...+++.|+++   |.|||++||++ ..+..+||++++|++|+++..|+
T Consensus       931 gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          931 YLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             TCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCEEECCBTTBCCC---
T ss_pred             CCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence            99999999999888765   67999999995 46778999999999999998774

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=8.3e-28  Score=270.85  Aligned_cols=170  Identities=25%  Similarity=0.296  Sum_probs=127.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEE-----------ECCeeCCCc-------cceEEEEccCCCC------CC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLE-----------VNGKPSSNK-------AYKFAYVRQEDLF------FS   56 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~-----------~~G~~~~~~-------~~~i~yv~Q~~~l------~~   56 (607)
                      +||||||||||||+|+|+++|+     +|+|.           +.|......       .....+.+|....      -+
T Consensus       109 vGpNGaGKSTLLkiL~Gll~P~-----~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (608)
T 3j16_B          109 VGTNGIGKSTALKILAGKQKPN-----LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP  183 (608)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCCC-----TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSS
T ss_pred             ECCCCChHHHHHHHHhcCCCCC-----CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcch
Confidence            6999999999999999999987     57652           233221110       0112333443211      11


Q ss_pred             CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 007344           57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEP  136 (607)
Q Consensus        57 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEP  136 (607)
                      ..++.+.+....      .    +..++++++++.+||.+..|     +.+..|||||||||+||++|+.+|++|+||||
T Consensus       184 ~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGe~Qrv~iAraL~~~p~llllDEP  248 (608)
T 3j16_B          184 VQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLK-----RDIEKLSGGELQRFAIGMSCVQEADVYMFDEP  248 (608)
T ss_dssp             SSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGG-----SCTTTCCHHHHHHHHHHHHHHSCCSEEEEECT
T ss_pred             hhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhC-----CChHHCCHHHHHHHHHHHHHHhCCCEEEEECc
Confidence            235666554321      0    11346889999999976554     45678999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeee
Q 007344          137 TTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYA  191 (607)
Q Consensus       137 tsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~  191 (607)
                      |+|||+.++..+.+.|++++++|+|||+++|+. ..+..++|++++|++|..+|.
T Consensus       249 ts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~~  302 (608)
T 3j16_B          249 SSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVYG  302 (608)
T ss_dssp             TTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTEE
T ss_pred             ccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCccccc
Confidence            999999999999999999998899999999996 578889999999988766553

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.93  E-value=2.1e-25  Score=260.17  Aligned_cols=124  Identities=30%  Similarity=0.404  Sum_probs=104.3

Q ss_pred             CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC---CeEEEe
Q 007344           58 LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP---SVIYAD  134 (607)
Q Consensus        58 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p---~illLD  134 (607)
                      +||.|++.|....         ....++.++|+.+||...    ..++.+..|||||||||+||++|+.+|   +|||||
T Consensus       767 ~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~----~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILD  833 (916)
T 3pih_A          767 MTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYV----KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILD  833 (916)
T ss_dssp             SBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGS----BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEE
T ss_pred             CCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchh----hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEE
Confidence            6888888875321         123457789999999532    123467899999999999999999875   799999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344          135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD  196 (607)
Q Consensus       135 EPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~  196 (607)
                      |||+|||+.+...+++.|++++++|.|||+++|++. .+ ..+|+|++|      ++|++++.|++++
T Consensus       834 EPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpee  899 (916)
T 3pih_A          834 EPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-VI-KNADHIIDLGPEGGKEGGYIVATGTPEE  899 (916)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEecCCCCCCCCEEEEEcCHHH
Confidence            999999999999999999999988999999999974 44 569999999      8999999999876

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.92  E-value=7.1e-26  Score=262.51  Aligned_cols=125  Identities=28%  Similarity=0.415  Sum_probs=102.7

Q ss_pred             CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC---CeEEE
Q 007344           57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP---SVIYA  133 (607)
Q Consensus        57 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p---~illL  133 (607)
                      .+||.|++.|...      . ..  .+++.++++.+||...    ..++.+..|||||||||+||++|+.+|   ++|||
T Consensus       806 ~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~----~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLIL  872 (972)
T 2r6f_A          806 DMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYM----KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYIL  872 (972)
T ss_dssp             TSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSS----BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEE
T ss_pred             hcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcc----cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            3678888876432      1 11  2345789999999641    223467789999999999999999865   99999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344          134 DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD  196 (607)
Q Consensus       134 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~  196 (607)
                      ||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..||++++|      ++|++++.|++++
T Consensus       873 DEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~e  939 (972)
T 2r6f_A          873 DEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEE  939 (972)
T ss_dssp             ECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSTTSCCSEEEEESHHH
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEEcCCCCCCCCEEEEecCHHH
Confidence            9999999999999999999999988999999999964 44 679999999      7899999998765

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.92  E-value=6.4e-25  Score=237.02  Aligned_cols=80  Identities=26%  Similarity=0.326  Sum_probs=74.0

Q ss_pred             CCHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee----
Q 007344          110 ISGGEKKRLSLACELIASP--SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL----  183 (607)
Q Consensus       110 LSGGerqRvsIa~aL~~~p--~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL----  183 (607)
                      |||||||||+||++|+.+|  ++|||||||+|||+.++..+.+.|++++ +|.|||++||++  ++...||++++|    
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~i~~l~k~~  372 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHHHYKVEKQV  372 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCeEEEEEEec
Confidence            6999999999999999999  9999999999999999999999999998 689999999997  355789999999    


Q ss_pred             cCCeeeeeC
Q 007344          184 TEGKLVYAG  192 (607)
Q Consensus       184 ~~G~iv~~G  192 (607)
                      ++|+++...
T Consensus       373 ~~G~~~~~~  381 (415)
T 4aby_A          373 EDGRTVSHV  381 (415)
T ss_dssp             ETTEEEEEE
T ss_pred             cCCceEEEE
Confidence            899987543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.1e-27  Score=259.66  Aligned_cols=169  Identities=14%  Similarity=0.049  Sum_probs=131.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccce-E-EEECCeeCCCccceEEEEccCCC---CCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSG-L-LEVNGKPSSNKAYKFAYVRQEDL---FFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G-~-I~~~G~~~~~~~~~i~yv~Q~~~---l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|+.+++     +| + |.+||.    .++.++|++|+..   +.+.+||+||+ |.......  
T Consensus       144 vGpnGsGKSTLlr~L~Gl~~p~-----~G~~pI~vdg~----~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~--  211 (460)
T 2npi_A          144 VGGSQTGKTSLSRTLCSYALKF-----NAYQPLYINLD----PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSG--  211 (460)
T ss_dssp             EESTTSSHHHHHHHHHHTTHHH-----HCCCCEEEECC----TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSS--
T ss_pred             ECCCCCCHHHHHHHHhCccccc-----CCceeEEEcCC----ccCCeeeeccchhhcccccccchhhhh-cccccccC--
Confidence            5999999999999999998876     89 8 999983    2456899999984   45568999998 64332111  


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHH--HhhCCCe----EEEeC-CCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACE--LIASPSV----IYADE-PTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~a--L~~~p~i----llLDE-PtsGLD~~~~~~i  148 (607)
                      ..   .++++.++++.+|+.+..+       +++|||||||||+||++  |+.+|++    ||||| ||+|||+. ...+
T Consensus       212 ~~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l  280 (460)
T 2npi_A          212 AT---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAEL  280 (460)
T ss_dssp             CC---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHH
T ss_pred             cc---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHH
Confidence            00   1233556778888865443       56899999999999999  9999999    99999 99999999 4444


Q ss_pred             HHHHHHHHhcCCeEEEEecCCh--h---HHHhhhcc-----eeeec-CCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPR--G---SVYFKFDD-----IVLLT-EGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~--~---~i~~~~D~-----v~lL~-~G~iv~~G~~~~  196 (607)
                      .+++++   .|.|+|+++|+..  .   .+..++|+     |++|+ +|+++ .|++++
T Consensus       281 ~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~  335 (460)
T 2npi_A          281 HHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVY  335 (460)
T ss_dssp             HHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHH
T ss_pred             HHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHH
Confidence            444443   3789999999975  1   55678999     99999 99999 887654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.91  E-value=6e-25  Score=254.31  Aligned_cols=108  Identities=32%  Similarity=0.384  Sum_probs=95.5

Q ss_pred             HHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           83 EYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIAS---PSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        83 ~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~---p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                      +++.++++.+||...    ..++.+..|||||||||.||++|+.+   |+||||||||+|||+.+...+++.|++++++|
T Consensus       708 ~~~~~~L~~~gL~~~----~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G  783 (842)
T 2vf7_A          708 FRALDTLREVGLGYL----RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG  783 (842)
T ss_dssp             HHHHHHHHHTTCTTS----BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCcc----cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence            467899999999642    12346778999999999999999996   79999999999999999999999999999889


Q ss_pred             CeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD  196 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~  196 (607)
                      .|||+++|++. .+ ..||+|++|      ++|++++.|++++
T Consensus       784 ~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~e  824 (842)
T 2vf7_A          784 NTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAE  824 (842)
T ss_dssp             CEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred             CEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHH
Confidence            99999999964 55 789999999      7999999998655

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.88  E-value=1.3e-22  Score=216.01  Aligned_cols=84  Identities=25%  Similarity=0.407  Sum_probs=77.6

Q ss_pred             CcCCCCCHHHHHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhc
Q 007344          105 AKVRGISGGEKKRLSLACELI------ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD  178 (607)
Q Consensus       105 ~~~~~LSGGerqRvsIa~aL~------~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D  178 (607)
                      +.+.+|||||||||+||++|+      .+|++|||||||+|||+.+...+++.|++++++|+|||+++|++.  ....+|
T Consensus       275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d  352 (365)
T 3qf7_A          275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD  352 (365)
T ss_dssp             EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred             CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence            467889999999999999999      699999999999999999999999999999988999999999974  367799


Q ss_pred             ceeeecCCeeee
Q 007344          179 DIVLLTEGKLVY  190 (607)
Q Consensus       179 ~v~lL~~G~iv~  190 (607)
                      ++++|++|+++.
T Consensus       353 ~~~~l~~G~i~~  364 (365)
T 3qf7_A          353 RKLRITGGVVVN  364 (365)
T ss_dssp             CEEEEETTEEC-
T ss_pred             EEEEEECCEEEe
Confidence            999999999874

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.86  E-value=1.1e-22  Score=195.00  Aligned_cols=143  Identities=14%  Similarity=0.081  Sum_probs=99.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC--CccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~   78 (607)
                      +||||||||||+|+|+|.+.    ..+.|...   .+..  ...+++||++|+.      ++.+++ + +..        
T Consensus         6 ~G~nGsGKTTLl~~l~g~l~----i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~--------   62 (178)
T 1ye8_A            6 TGEPGVGKTTLVKKIVERLG----KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSK--------   62 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHHG----GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EET--------
T ss_pred             ECCCCCCHHHHHHHHHHHhC----CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhh--------
Confidence            59999999999999999874    22344321   1221  2235699999975      222332 0 000        


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHH-----HhhCCCeEEEeC--CCCCCCHHHHHHHHHH
Q 007344           79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACE-----LIASPSVIYADE--PTTGLDAFQAEKVMEA  151 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~a-----L~~~p~illLDE--PtsGLD~~~~~~i~~~  151 (607)
                                    +...   ....++++..||||||||++||++     ++.+|++++|||  ||++||+.....+.+.
T Consensus        63 --------------~~~~---~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~  125 (178)
T 1ye8_A           63 --------------FFTS---KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI  125 (178)
T ss_dssp             --------------TCCC---SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH
T ss_pred             --------------cCCc---cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH
Confidence                          1000   011234567899999999999996     999999999999  9999999999998888


Q ss_pred             HHHHHhcCCeEEEEec--CChhHHHhhhcceeeecCCeeee
Q 007344          152 LRQLAQDGHTVICSIH--QPRGSVYFKFDDIVLLTEGKLVY  190 (607)
Q Consensus       152 L~~la~~g~tvi~~~H--~p~~~i~~~~D~v~lL~~G~iv~  190 (607)
                      +++   .+.|+|+++|  +....+..++|+    .+|+++.
T Consensus       126 l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          126 MHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE  159 (178)
T ss_dssp             HTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred             Hhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence            865   4677999997  345567777777    5567665

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.86  E-value=3.1e-22  Score=209.52  Aligned_cols=89  Identities=25%  Similarity=0.290  Sum_probs=73.9

Q ss_pred             CCcCCCCCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcc
Q 007344          104 DAKVRGISGGEKKRLSLACELI----ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD  179 (607)
Q Consensus       104 ~~~~~~LSGGerqRvsIa~aL~----~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~  179 (607)
                      +..+..||||||||++||++|+    .+|++++|||||++||+.....+.+.|++++ +|.|||+++|++  ++...+|+
T Consensus       214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~  290 (322)
T 1e69_A          214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADL  290 (322)
T ss_dssp             CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSE
T ss_pred             cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCce
Confidence            3456789999999999999997    5789999999999999999999999999985 488999999995  35678998


Q ss_pred             e--eeecCCee-eeeCCCC
Q 007344          180 I--VLLTEGKL-VYAGPAR  195 (607)
Q Consensus       180 v--~lL~~G~i-v~~G~~~  195 (607)
                      +  ++|.+|+. +.....+
T Consensus       291 ~~~v~~~~g~s~~~~~~~~  309 (322)
T 1e69_A          291 LHGVTMVNGVSAIVPVEVE  309 (322)
T ss_dssp             EEEEEESSSCEEEEECCC-
T ss_pred             EEEEEEeCCEEEEEEEEcc
Confidence            6  77777754 4334433

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.86  E-value=2.2e-24  Score=212.11  Aligned_cols=125  Identities=20%  Similarity=0.235  Sum_probs=85.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEEC--CeeCCCccceEEEEccCCCCCCCCCHHHHH-HHHH----HccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVN--GKPSSNKAYKFAYVRQEDLFFSQLTVRETL-SLAA----ELQLP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~--G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l-~~~~----~~~~~   73 (607)
                      +||||||||||||+|+|+ +|+     +|+|...  ..+....++++|||+|++        +||+ .+..    .+.. 
T Consensus        28 iG~nGsGKSTLl~~l~Gl-~p~-----~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~~~~~-   92 (208)
T 3b85_A           28 LGPAGSGKTYLAMAKAVQ-ALQ-----SKQVSRIILTRPAVEAGEKLGFLPGTL--------NEKIDPYLRPLHDALRD-   92 (208)
T ss_dssp             ECCTTSSTTHHHHHHHHH-HHH-----TTSCSEEEEEECSCCTTCCCCSSCC--------------CTTTHHHHHHHTT-
T ss_pred             ECCCCCCHHHHHHHHhcC-CCc-----CCeeeeEEecCCchhhhcceEEecCCH--------HHHHHHHHHHHHHHHHH-
Confidence            599999999999999999 776     4555211  011112245699999975        4444 2211    1110 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                       ...    .++++++++. |+                  ||||||+||++|+.+|++|||||||+|    ++..+.+.|+
T Consensus        93 -~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~  144 (208)
T 3b85_A           93 -MVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLT  144 (208)
T ss_dssp             -TSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHT
T ss_pred             -hcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHH
Confidence             001    1235555554 32                  999999999999999999999999999    8899999999


Q ss_pred             HHHhcCCeEEEEecCCh
Q 007344          154 QLAQDGHTVICSIHQPR  170 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~  170 (607)
                      ++ ++|+||| ++|++.
T Consensus       145 ~l-~~g~tii-vtHd~~  159 (208)
T 3b85_A          145 RL-GFGSKMV-VTGDIT  159 (208)
T ss_dssp             TB-CTTCEEE-EEEC--
T ss_pred             Hh-cCCCEEE-EECCHH
Confidence            98 6789999 999964

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.82  E-value=1.4e-22  Score=218.22  Aligned_cols=152  Identities=16%  Similarity=0.181  Sum_probs=119.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+|+|+|+.+++     +|+|.++|.+.+.    .+|++|++ .++.+|+.|++.+..    +       
T Consensus        75 vG~nGaGKSTLln~L~Gl~~p~-----~GsI~~~g~~~t~----~~~v~q~~-~~~~ltv~D~~g~~~----~-------  133 (413)
T 1tq4_A           75 TGETGSGKSSFINTLRGIGNEE-----EGAAKTGVVEVTM----ERHPYKHP-NIPNVVFWDLPGIGS----T-------  133 (413)
T ss_dssp             EECTTSSHHHHHHHHHTCCTTS-----TTSCCCCC----C----CCEEEECS-SCTTEEEEECCCGGG----S-------
T ss_pred             ECCCCCcHHHHHHHHhCCCCcc-----CceEEECCeecce----eEEecccc-ccCCeeehHhhcccc----h-------
Confidence            5999999999999999999887     7999999876532    27899985 577889998875431    0       


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHH--HHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHH
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG--EKKRLSLACELIA----------SPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG--erqRvsIa~aL~~----------~p~illLDEPtsGLD~~~~~~i  148 (607)
                       +.+++++++.+++.+.. .     .+. +|||  ||||+.||++|+.          +|++++|||||+|||+.++.++
T Consensus       134 -~~~~~~~L~~~~L~~~~-~-----~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l  205 (413)
T 1tq4_A          134 -NFPPDTYLEKMKFYEYD-F-----FII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKV  205 (413)
T ss_dssp             -SCCHHHHHHHTTGGGCS-E-----EEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHH
T ss_pred             -HHHHHHHHHHcCCCccC-C-----eEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHH
Confidence             12467889999986432 1     222 9999  9999999999999          9999999999999999999999


Q ss_pred             HHHHHHHH-----hcC----CeEEEEecCChh-HHHhhhccee
Q 007344          149 MEALRQLA-----QDG----HTVICSIHQPRG-SVYFKFDDIV  181 (607)
Q Consensus       149 ~~~L~~la-----~~g----~tvi~~~H~p~~-~i~~~~D~v~  181 (607)
                      ++.++++.     +.|    .+|++++|+... .+.+++|++.
T Consensus       206 ~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~  248 (413)
T 1tq4_A          206 LQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI  248 (413)
T ss_dssp             HHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence            99999985     333    578899998653 3777778774

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.81  E-value=3.4e-22  Score=204.21  Aligned_cols=141  Identities=17%  Similarity=0.154  Sum_probs=92.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~   78 (607)
                      +||||||||||+|+|+|...++     +|+|.++|+++...  .+.++|++|++.+++.+||.||+.|+.....  ....
T Consensus         8 vG~nGaGKSTLln~L~g~~~~~-----~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~~   80 (270)
T 3sop_A            8 VGQSGLGKSTLVNTLFKSQVSR-----KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENCW   80 (270)
T ss_dssp             EESSSSSHHHHHHHHHHHHC-----------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTCS
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-----CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHHH
Confidence            6999999999999999999887     79999999876443  3569999999999999999999988754331  1111


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344           79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~  158 (607)
                      +    .+.+.++    .+..     +.....||||||||++|||+++.   ++++|||++|||+..    .+.++++.+.
T Consensus        81 ~----~i~~~~~----~~~~-----~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~  140 (270)
T 3sop_A           81 E----PIEKYIN----EQYE-----KFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV  140 (270)
T ss_dssp             H----HHHHHHH----HHHH-----HHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT
T ss_pred             H----HHHHHHH----HHHH-----hhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc
Confidence            1    2222222    1111     22345799999999999999775   999999999999987    5566667665


Q ss_pred             CCeEEEEecCC
Q 007344          159 GHTVICSIHQP  169 (607)
Q Consensus       159 g~tvi~~~H~p  169 (607)
                       .+||+++|..
T Consensus       141 -~~vI~Vi~K~  150 (270)
T 3sop_A          141 -VNIIPVIAKA  150 (270)
T ss_dssp             -SEEEEEETTG
T ss_pred             -CcEEEEEecc
Confidence             8999999873

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.80  E-value=4.7e-21  Score=182.19  Aligned_cols=63  Identities=11%  Similarity=0.240  Sum_probs=58.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhcCCeEEEEecCCh
Q 007344          108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAF----------------QAEKVMEALRQLAQDGHTVICSIHQPR  170 (607)
Q Consensus       108 ~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~----------------~~~~i~~~L~~la~~g~tvi~~~H~p~  170 (607)
                      ...|||||||++||++++.+|++++|||||+|||+.                ....+.+.+++++++|.|+|+++|++.
T Consensus        82 ~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~  160 (171)
T 4gp7_A           82 NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE  160 (171)
T ss_dssp             CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence            346999999999999999999999999999999999                668899999999878999999999964

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.80  E-value=3.4e-20  Score=216.30  Aligned_cols=161  Identities=26%  Similarity=0.394  Sum_probs=124.8

Q ss_pred             HHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC-C-----HHHHHH
Q 007344           10 TLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL-S-----VEERDE   83 (607)
Q Consensus        10 TLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~-~-----~~~~~~   83 (607)
                      |+..|..+++.+.     .|+|.++|+++..              +..+||.|++.|.....++... .     .++. +
T Consensus       383 ~C~~C~g~rl~~~-----~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~-~  442 (916)
T 3pih_A          383 TCSVCGGRRLNRE-----ALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEI-E  442 (916)
T ss_dssp             ECTTTCSCCBCTT-----GGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHH-H
T ss_pred             cchhcccccCChH-----hcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHH-H
Confidence            3445666677765     7899999987632              3446888998886554332111 0     0112 2


Q ss_pred             HHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCe
Q 007344           84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS--VIYADEPTTGLDAFQAEKVMEALRQLAQDGHT  161 (607)
Q Consensus        84 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~--illLDEPtsGLD~~~~~~i~~~L~~la~~g~t  161 (607)
                      ...+.|..+||....    .++.+.+|||||||||.||++|+++|+  +|+|||||+|||+.....+++.|++++++|.|
T Consensus       443 ~~~~~L~~vgL~~l~----l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~T  518 (916)
T 3pih_A          443 KRLEFLVDVGLEYLT----LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNT  518 (916)
T ss_dssp             HHHHHHHTTTCTTCB----TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCE
T ss_pred             HHHHHHHHcCCcccc----ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCE
Confidence            345678889995431    245677899999999999999999887  99999999999999999999999999988999


Q ss_pred             EEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344          162 VICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD  196 (607)
Q Consensus       162 vi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~  196 (607)
                      ||+++|++. .+ ..+|+|++|      ++|++++.|++++
T Consensus       519 vivVtHd~~-~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e  557 (916)
T 3pih_A          519 VIVVEHDEE-VI-RNADHIIDIGPGGGTNGGRVVFQGTVDE  557 (916)
T ss_dssp             EEEECCCHH-HH-HTCSEEEEEESSSGGGCSEEEEEECHHH
T ss_pred             EEEEeCCHH-HH-HhCCEEEEEcCCcccCCCEEEEeechhh
Confidence            999999963 44 459999999      8999999998765

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.77  E-value=9.3e-23  Score=199.69  Aligned_cols=162  Identities=15%  Similarity=0.089  Sum_probs=112.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-ccceEEEEccCCCCCCCCCHHHHHHHHHHccC---CCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKFAYVRQEDLFFSQLTVRETLSLAAELQL---PEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~---~~~~   76 (607)
                      +||||||||||+|+|+|+++..     .+.+.+.+.+... ..+.++|++|+..+++.+|+.|++........   ....
T Consensus        26 ~GpnGsGKSTLl~~l~gl~~~i-----~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~  100 (207)
T 1znw_A           26 SGPSAVGKSTVVRCLRERIPNL-----HFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGT  100 (207)
T ss_dssp             ECSTTSSHHHHHHHHHHHSTTC-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEE
T ss_pred             ECCCCCCHHHHHHHHHhhCCce-----EEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCC
Confidence            6999999999999999998521     2222232322211 23458999999888888888777632111000   0012


Q ss_pred             CHHHHHHHHHHH------HHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC----CHHHHH
Q 007344           77 SVEERDEYVNSL------LFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGL----DAFQAE  146 (607)
Q Consensus        77 ~~~~~~~~v~~~------l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGL----D~~~~~  146 (607)
                      ++++.++++++.      ++.+|+.+.+     +..++.||           +|+.+|++++|||||+|+    |+..+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~  164 (207)
T 1znw_A          101 LAQPVRAAAATGVPVLIEVDLAGARAIK-----KTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQR  164 (207)
T ss_dssp             EHHHHHHHHHHTCCEEEECCHHHHHHHH-----HHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHH
T ss_pred             cHHHHHHHHHcCCeEEEEeCHHHHHHHH-----HhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHH
Confidence            344455556554      4455553332     23445666           889999999999999998    788999


Q ss_pred             HHHHHHHHHH-hcCCeEEEEecCChhHHHhhhcceeeec
Q 007344          147 KVMEALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       147 ~i~~~L~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                      ++.+.+++++ +.|.|+|+++|++ .++...||++++|.
T Consensus       165 ~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~  202 (207)
T 1znw_A          165 RLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT  202 (207)
T ss_dssp             HHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence            9999999997 4689999999996 57889999999984

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.77  E-value=1.8e-18  Score=200.77  Aligned_cols=135  Identities=24%  Similarity=0.410  Sum_probs=110.4

Q ss_pred             CCCCCHHHHHHHHHHccCCCC---CC---HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC
Q 007344           55 FSQLTVRETLSLAAELQLPEI---LS---VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP  128 (607)
Q Consensus        55 ~~~lTV~E~l~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p  128 (607)
                      +..+||.|++.|...+.++..   ..   .++..+++ +.|+.+||...    ..++.+..|||||||||.||++|..+|
T Consensus       449 ~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l----~ldR~~~tLSGGEkQRV~LA~aL~~~~  523 (972)
T 2r6f_A          449 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYL----TLSRSAGTLSGGEAQRIRLATQIGSRL  523 (972)
T ss_dssp             HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTS----BSSSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred             HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCcc----ccCCccccCCHHHHHHHHHHHHHhhCC
Confidence            345899999999877654320   00   02344555 45899999542    124567789999999999999999985


Q ss_pred             --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344          129 --SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD  196 (607)
Q Consensus       129 --~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~  196 (607)
                        ++|+|||||+|||+.....+++.|++|++.|.|||+++|++. .+ ..+|+|++|      ++|++++.|++++
T Consensus       524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e  597 (972)
T 2r6f_A          524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-TM-LAADYLIDIGPGAGIHGGEVVAAGTPEE  597 (972)
T ss_dssp             CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-HH-HSCSEEEEECSSSGGGCCSEEEEECTTT
T ss_pred             CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEeCCCccCCCCEEEEecCHHH
Confidence              999999999999999999999999999989999999999963 44 579999999      7999999999887

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.76  E-value=1.5e-18  Score=182.77  Aligned_cols=79  Identities=24%  Similarity=0.333  Sum_probs=70.9

Q ss_pred             CCcCCCCCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhh
Q 007344          104 DAKVRGISGGEKK------RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF  177 (607)
Q Consensus       104 ~~~~~~LSGGerq------RvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~  177 (607)
                      +..++.|||||||      |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++|.|||+++|++  ++...|
T Consensus       243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~  320 (339)
T 3qkt_A          243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA  320 (339)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred             cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhC
Confidence            3457889999999      66777888889999999999999999999999999999988899999999995  467889


Q ss_pred             cceeeec
Q 007344          178 DDIVLLT  184 (607)
Q Consensus       178 D~v~lL~  184 (607)
                      |+++.|+
T Consensus       321 d~~~~l~  327 (339)
T 3qkt_A          321 DHVIRIS  327 (339)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            9999995

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.76  E-value=3.9e-20  Score=191.81  Aligned_cols=156  Identities=16%  Similarity=0.103  Sum_probs=116.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----------cceEEEEccCCC-CCCCCCHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----------AYKFAYVRQEDL-FFSQLTVRETLSLAA   68 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~-l~~~lTV~E~l~~~~   68 (607)
                      +||||||||||+++|+|++++.     +|+|.++|.+....           +..++|++|++. +++.+||+|++.++.
T Consensus       106 vG~nGsGKTTll~~Lag~l~~~-----~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~  180 (302)
T 3b9q_A          106 VGVNGGGKTTSLGKLAHRLKNE-----GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK  180 (302)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHHT-----TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHH
Confidence            5999999999999999999876     79999999876432           124999999988 888899999998864


Q ss_pred             HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHH
Q 007344           69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS--VIYADEPTTGLDAFQAE  146 (607)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~--illLDEPtsGLD~~~~~  146 (607)
                      ...    ..        ..+++.+|+.+..+     ..+++||   |||++||++|+.+|+  +|+|| ||+|||+... 
T Consensus       181 ~~~----~d--------~~lldt~gl~~~~~-----~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~-  238 (302)
T 3b9q_A          181 EEG----YD--------VVLCDTSGRLHTNY-----SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ-  238 (302)
T ss_dssp             HTT----CS--------EEEECCCCCSSCCH-----HHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH-
T ss_pred             HcC----Cc--------chHHhcCCCCcchh-----HHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH-
Confidence            311    00        13456677755443     3456799   999999999999999  99999 9999998754 


Q ss_pred             HHHHHHHHHH-hcCCeEEEEecCCh--------hHHHhhhcceeeecCCee
Q 007344          147 KVMEALRQLA-QDGHTVICSIHQPR--------GSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       147 ~i~~~L~~la-~~g~tvi~~~H~p~--------~~i~~~~D~v~lL~~G~i  188 (607)
                           ++++. +.|.|+|++||...        +.+....+.|..+..|+.
T Consensus       239 -----~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~  284 (302)
T 3b9q_A          239 -----AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  284 (302)
T ss_dssp             -----HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             -----HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence                 34555 45899999999432        123334456777777754

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.76  E-value=4.4e-19  Score=205.43  Aligned_cols=172  Identities=22%  Similarity=0.272  Sum_probs=126.5

Q ss_pred             CCCcHHHHHHHHHcCcCCC-CCC---ccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCC------
Q 007344            4 SGSGKTTLLNVLAGQLMAS-PRL---HLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP------   73 (607)
Q Consensus         4 sGsGKSTLL~~LaG~~~~~-~~~---~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~------   73 (607)
                      |..||+++.+.+....-|. .+.   ...|+|.++|+++.+..              .+++.|.+.|.......      
T Consensus       271 ~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~--------------~~~v~e~~~~~~~~~~~~~~~~~  336 (842)
T 2vf7_A          271 SASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELS--------------RLPLARVSELLRPYAEEREPGHA  336 (842)
T ss_dssp             CHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHH--------------HSBHHHHHHHHHHHHTTCSSCST
T ss_pred             CHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHh--------------hcCHHHHHHHHHhhhhhhhhccc
Confidence            4468999999888743222 111   13677888887664321              13455554444433100      


Q ss_pred             ----CCCC--------HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC--CeEEEeCCCCC
Q 007344           74 ----EILS--------VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP--SVIYADEPTTG  139 (607)
Q Consensus        74 ----~~~~--------~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p--~illLDEPtsG  139 (607)
                          -...        .++..++++ .++.+||.+.    ..++.+..|||||||||.||++|..+|  ++|+|||||+|
T Consensus       337 ~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l----~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~  411 (842)
T 2vf7_A          337 ERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGYL----GLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAG  411 (842)
T ss_dssp             TSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTS----BTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTT
T ss_pred             chhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcC----CccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCcccc
Confidence                0000        234556666 6889999643    124567789999999999999999999  59999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344          140 LDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD  196 (607)
Q Consensus       140 LD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~  196 (607)
                      ||+.....++++|++|++.|.|||+++|++.  +...+|+|++|      ++|++++.|++++
T Consensus       412 Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~  472 (842)
T 2vf7_A          412 LHPADTEALLSALENLKRGGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEG  472 (842)
T ss_dssp             CCGGGHHHHHHHHHHHHTTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGG
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHH
Confidence            9999999999999999999999999999963  55679999999      7999999999876

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.74  E-value=2.5e-18  Score=159.70  Aligned_cols=82  Identities=26%  Similarity=0.331  Sum_probs=73.9

Q ss_pred             CCcCCCCCHHHHHHHHHH------HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhh
Q 007344          104 DAKVRGISGGEKKRLSLA------CELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF  177 (607)
Q Consensus       104 ~~~~~~LSGGerqRvsIa------~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~  177 (607)
                      ++.++.||||||||++||      ++|+.+|++++|||||+|||+.++..+.+.++++.++|+|||+++|++  ++...+
T Consensus        52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~  129 (148)
T 1f2t_B           52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA  129 (148)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred             cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence            456789999999999886      899999999999999999999999999999999987799999999996  456889


Q ss_pred             cceeee--cCCe
Q 007344          178 DDIVLL--TEGK  187 (607)
Q Consensus       178 D~v~lL--~~G~  187 (607)
                      |++++|  .+|.
T Consensus       130 d~ii~l~~~~g~  141 (148)
T 1f2t_B          130 DHVIRISLENGS  141 (148)
T ss_dssp             SEEEEEEEETTE
T ss_pred             CEEEEEEcCCCe
Confidence            999999  4553

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.72  E-value=3.4e-19  Score=188.53  Aligned_cols=156  Identities=16%  Similarity=0.106  Sum_probs=117.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----------cceEEEEccCCC-CCCCCCHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----------AYKFAYVRQEDL-FFSQLTVRETLSLAA   68 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~-l~~~lTV~E~l~~~~   68 (607)
                      +||||||||||++.|+|++++.     +|+|.++|.+....           +..++|++|++. +++.+||+|++.++.
T Consensus       163 vG~nGsGKTTll~~Lag~l~~~-----~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~  237 (359)
T 2og2_A          163 VGVNGGGKTTSLGKLAHRLKNE-----GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK  237 (359)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHHT-----TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHH
T ss_pred             EcCCCChHHHHHHHHHhhcccc-----CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHH
Confidence            5999999999999999999876     79999999876431           124999999988 888899999998864


Q ss_pred             HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHH
Q 007344           69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS--VIYADEPTTGLDAFQAE  146 (607)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~--illLDEPtsGLD~~~~~  146 (607)
                      ...    ..        ..+++.+|+.+..+     ..+++||   |||++||++|+.+|+  +|+|| ||+|||+.+..
T Consensus       238 ~~~----~d--------~~lldt~Gl~~~~~-----~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~  296 (359)
T 2og2_A          238 EEG----YD--------VVLCDTSGRLHTNY-----SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA  296 (359)
T ss_dssp             HTT----CS--------EEEEECCCCSSCCH-----HHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred             hCC----CH--------HHHHHhcCCChhhh-----hHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH
Confidence            311    10        13456677755443     3456799   999999999999999  99999 99999987653


Q ss_pred             HHHHHHHHHH-hcCCeEEEEecCCh--------hHHHhhhcceeeecCCee
Q 007344          147 KVMEALRQLA-QDGHTVICSIHQPR--------GSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       147 ~i~~~L~~la-~~g~tvi~~~H~p~--------~~i~~~~D~v~lL~~G~i  188 (607)
                            +++. +.|.|+|++||...        +......+.|..+..|+.
T Consensus       297 ------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~  341 (359)
T 2og2_A          297 ------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  341 (359)
T ss_dssp             ------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             ------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence                  4455 35899999999421        123334456766666643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.72  E-value=2.8e-18  Score=180.10  Aligned_cols=113  Identities=15%  Similarity=0.173  Sum_probs=90.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||+|+|+|.++++     +|.|.++|.+...   ..+.+++++                            
T Consensus       177 ~G~~GsGKTTll~~l~g~~~~~-----~g~i~i~~~~e~~~~~~~~~i~~~~----------------------------  223 (330)
T 2pt7_A          177 CGGTGSGKTTYIKSIMEFIPKE-----ERIISIEDTEEIVFKHHKNYTQLFF----------------------------  223 (330)
T ss_dssp             EESTTSCHHHHHHHGGGGSCTT-----SCEEEEESSCCCCCSSCSSEEEEEC----------------------------
T ss_pred             ECCCCCCHHHHHHHHhCCCcCC-----CcEEEECCeeccccccchhEEEEEe----------------------------
Confidence            5999999999999999999886     7999999864211   112233332                            


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                                                     +  |||+||++||++|..+|+++++||||+       .++.+.|+.+..
T Consensus       224 -------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~  263 (330)
T 2pt7_A          224 -------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCS  263 (330)
T ss_dssp             -------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHT
T ss_pred             -------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhc
Confidence                                           1  899999999999999999999999998       245677777765


Q ss_pred             cCCeEEEEecCChhHHHhhhcceeeecCCee
Q 007344          158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       158 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i  188 (607)
                      .+.|+++++|+++  ....+||+++|.+|+.
T Consensus       264 g~~tvi~t~H~~~--~~~~~dri~~l~~g~~  292 (330)
T 2pt7_A          264 GHKGTLTTLHAGS--SEEAFIRLANMSSSNS  292 (330)
T ss_dssp             TCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred             CCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence            4458999999975  6677999999988854

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.70  E-value=1.1e-20  Score=195.49  Aligned_cols=137  Identities=17%  Similarity=0.246  Sum_probs=100.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHH-HHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRE-TLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E-~l~~~~~~~~~~~~~~~   79 (607)
                      +||||||||||+++|+|++        +|+|             ++|++|++.++.. |++| |+.+...      .+. 
T Consensus       132 vGpsGsGKSTLl~lL~gl~--------~G~I-------------~~~v~q~~~lf~~-ti~~~ni~~~~~------~~~-  182 (305)
T 2v9p_A          132 IGPPNTGKSMLCNSLIHFL--------GGSV-------------LSFANHKSHFWLA-SLADTRAALVDD------ATH-  182 (305)
T ss_dssp             ECSSSSSHHHHHHHHHHHH--------TCEE-------------ECGGGTTSGGGGG-GGTTCSCEEEEE------ECH-
T ss_pred             ECCCCCcHHHHHHHHhhhc--------CceE-------------EEEecCccccccc-cHHHHhhccCcc------ccH-
Confidence            5999999999999999986        4776             4578898888775 7876 7765311      111 


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                          .+.+.++.+ |.+..|       ...||||||||   ||+|+.+|+|||    ||+||+.+...+..         
T Consensus       183 ----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------  234 (305)
T 2v9p_A          183 ----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------  234 (305)
T ss_dssp             ----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------
T ss_pred             ----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------
Confidence                234455553 333222       45899999999   999999999999    99999999988862         


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhh
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFS  203 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~  203 (607)
                           .+|++.  ....+|+| +|++|++++.|+.++ ....|.
T Consensus       235 -----ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~e-l~~~y~  269 (305)
T 2v9p_A          235 -----LHSRVQ--TFRFEQPC-TDESGEQPFNITDAD-WKSFFV  269 (305)
T ss_dssp             -----GTTTEE--EEECCCCC-CCC---CCCCCCHHH-HHHHHH
T ss_pred             -----HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHH-HHHHHH
Confidence                 178764  35789999 999999999998766 444443

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.69  E-value=1.6e-19  Score=188.08  Aligned_cols=151  Identities=9%  Similarity=0.003  Sum_probs=107.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+++|+|++++.     .|.            .+++||+|++.+++. |++||+.+....    ..+...
T Consensus        96 ~G~sGsGKSTL~~~L~gll~~~-----~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~----g~~~~~  153 (312)
T 3aez_A           96 AGSVAVGKSTTARVLQALLARW-----DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHRK----GFPESY  153 (312)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHTS-----TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCT----TSGGGB
T ss_pred             ECCCCchHHHHHHHHHhhcccc-----CCC------------CeEEEEecCccCCcc-cHHHHHHHHHhc----CCChHH
Confidence            5999999999999999998764     332            458999999999988 999997642211    112222


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH  160 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~  160 (607)
                      ..+.+.+.++.++ .+..+     ..+..|||||+||+++|++++.+|+|||+|||+..+|+..        ..+.+.-.
T Consensus       154 d~~~~~~~L~~l~-~~~~~-----~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D  219 (312)
T 3aez_A          154 NRRALMRFVTSVK-SGSDY-----ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFD  219 (312)
T ss_dssp             CHHHHHHHHHHHH-TTCSC-----EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCS
T ss_pred             HHHHHHHHHHHhC-CCccc-----CCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcC
Confidence            2345677888887 43332     2456899999999999999999999999999999998621        11222222


Q ss_pred             eEEEEecCChhHHHhhhcceeeecCCe
Q 007344          161 TVICSIHQPRGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       161 tvi~~~H~p~~~i~~~~D~v~lL~~G~  187 (607)
                      .+|++.|+.........+|.+.+.+|+
T Consensus       220 ~~I~V~a~~~~~~~R~i~R~~~~rd~~  246 (312)
T 3aez_A          220 FSLYVDARIEDIEQWYVSRFLAMRTTA  246 (312)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred             cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence            456666665555556677777777665

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.68  E-value=1.2e-19  Score=197.12  Aligned_cols=156  Identities=19%  Similarity=0.193  Sum_probs=121.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCe---eCCC----------ccceEEEEccC-CCCCCCCCHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK---PSSN----------KAYKFAYVRQE-DLFFSQLTVRETLSL   66 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~---~~~~----------~~~~i~yv~Q~-~~l~~~lTV~E~l~~   66 (607)
                      +|||||||||||++|+|..+++     .|.|.++|+   +...          ..+.++||+|+ +.+++.+||.+|+.+
T Consensus       163 vG~sGsGKSTLl~~Iag~~~~~-----~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~  237 (438)
T 2dpy_A          163 FAGSGVGKSVLLGMMARYTRAD-----VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATR  237 (438)
T ss_dssp             EECTTSSHHHHHHHHHHHSCCS-----EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcccCCC-----eEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence            5999999999999999999886     899999998   3322          13469999995 566778899999988


Q ss_pred             HHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 007344           67 AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE  146 (607)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~  146 (607)
                      .++....       ..+.+   +      ...|      .+..+|+|| |||+||   +.+|++      |+|||+.+..
T Consensus       238 ~ae~~~~-------~~~~v---~------~~ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~  285 (438)
T 2dpy_A          238 IAEDFRD-------RGQHV---L------LIMD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFA  285 (438)
T ss_dssp             HHHHHHT-------TTCEE---E------EEEE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHH
T ss_pred             HHHHHHh-------CCCCH---H------HHHH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHH
Confidence            7653210       00000   0      0111      245699999 999999   888988      9999999999


Q ss_pred             HHHHHHHHHHh---c-CC-----eEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          147 KVMEALRQLAQ---D-GH-----TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       147 ~i~~~L~~la~---~-g~-----tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.++++++.+   + |+     ||++++|+.+   ...+|++++|.+|+++..|++.+
T Consensus       286 ~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~  341 (438)
T 2dpy_A          286 KLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAE  341 (438)
T ss_dssp             HHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHH
T ss_pred             HHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHH
Confidence            99999999876   3 64     9999999986   46789999999999998886544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.67  E-value=5.4e-17  Score=180.71  Aligned_cols=144  Identities=15%  Similarity=0.081  Sum_probs=108.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+++++|..++.      |+            +.+.|++|+..    .++.++.   .+  .  ..+.  
T Consensus       287 ~G~~GsGKSTLl~~l~g~~~~~------G~------------~vi~~~~ee~~----~~l~~~~---~~--~--g~~~--  335 (525)
T 1tf7_A          287 TGATGTGKTLLVSRFVENACAN------KE------------RAILFAYEESR----AQLLRNA---YS--W--GMDF--  335 (525)
T ss_dssp             EECTTSSHHHHHHHHHHHHHTT------TC------------CEEEEESSSCH----HHHHHHH---HT--T--SCCH--
T ss_pred             EeCCCCCHHHHHHHHHHHHHhC------CC------------CEEEEEEeCCH----HHHHHHH---HH--c--CCCH--
Confidence            4999999999999999987653      32            12456667641    1222222   11  1  1221  


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH-----HHHHHHHHHHHH
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAF-----QAEKVMEALRQL  155 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~-----~~~~i~~~L~~l  155 (607)
                           ++ +...|+.+..     +..+..|||||+||+.+|+++..+|+++++| ||+|||..     .+..+.++++.+
T Consensus       336 -----~~-~~~~g~~~~~-----~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l  403 (525)
T 1tf7_A          336 -----EE-MERQNLLKIV-----CAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYA  403 (525)
T ss_dssp             -----HH-HHHTTSEEEC-----CCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHH
T ss_pred             -----HH-HHhCCCEEEE-----EeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHH
Confidence                 12 2345654333     3456789999999999999999999999999 99999999     999999999999


Q ss_pred             HhcCCeEEEEecCCh---------hHHHhhhcceeeecCCe
Q 007344          156 AQDGHTVICSIHQPR---------GSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       156 a~~g~tvi~~~H~p~---------~~i~~~~D~v~lL~~G~  187 (607)
                      ++.|.|||+++|+..         ..+..++|+|++|++|+
T Consensus       404 ~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          404 KQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             HHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             HhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            989999999999971         45677899999999886

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.64  E-value=4.8e-17  Score=167.58  Aligned_cols=164  Identities=16%  Similarity=0.137  Sum_probs=102.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccce-EEEECCeeCCCc--cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSG-LLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G-~I~~~G~~~~~~--~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||++.|+|...+.     +| .|.+.+......  .+++.++.|...    +++.+++.... +      +
T Consensus        41 ~G~~G~GKTTl~~~ia~~~~~~-----~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~~l~~~~-~------~  104 (296)
T 1cr0_A           41 TSGSGMGKSTFVRQQALQWGTA-----MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSDSLKREI-I------E  104 (296)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHT-----SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCHHHHHHH-H------H
T ss_pred             EeCCCCCHHHHHHHHHHHHHHH-----cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhccccccCC-C------C
Confidence            5999999999999999998765     35 564433222211  123333333321    12233443221 1      1


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHH-HHHHHHHHHHhhCCCeEEEeCCCC---C---CCH-HHHHHHH
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE-KKRLSLACELIASPSVIYADEPTT---G---LDA-FQAEKVM  149 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe-rqRvsIa~aL~~~p~illLDEPts---G---LD~-~~~~~i~  149 (607)
                      .++.++.++++++..++.      + ...+..+|.+| +||+. |+++..+|+++++||||+   +   +|. ....+++
T Consensus       105 ~~~~~~~~~~~l~~~~l~------i-~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~  176 (296)
T 1cr0_A          105 NGKFDQWFDELFGNDTFH------L-YDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLM  176 (296)
T ss_dssp             HTHHHHHHHHHHSSSCEE------E-ECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCEE------E-ECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHH
Confidence            223334455555433331      1 11234689998 66666 999999999999999999   5   555 6678899


Q ss_pred             HHHHHHHh-cCCeEEEEecCCh-h--------------------HHHhhhcceeeecCCee
Q 007344          150 EALRQLAQ-DGHTVICSIHQPR-G--------------------SVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       150 ~~L~~la~-~g~tvi~~~H~p~-~--------------------~i~~~~D~v~lL~~G~i  188 (607)
                      +.|+++++ .|.|||+++|+.. .                    .+...||+|++|++|+.
T Consensus       177 ~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          177 TKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             HHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             HHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            99999985 4999999999952 2                    67788999999988864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.61  E-value=7.9e-20  Score=180.64  Aligned_cols=157  Identities=15%  Similarity=0.120  Sum_probs=106.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC------ccceEEEEccCCCCCCCCCH-HHHHH---HHHHc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------KAYKFAYVRQEDLFFSQLTV-RETLS---LAAEL   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~------~~~~i~yv~Q~~~l~~~lTV-~E~l~---~~~~~   70 (607)
                      +||||||||||+|+|+|+. +       |+|.+ |.+...      ....++|++|++.+|+.++. .+++.   +....
T Consensus        29 vGpsGsGKSTLl~~L~g~~-p-------G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   99 (218)
T 1z6g_A           29 CGPSGVGKGTLIKKLLNEF-P-------NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNF   99 (218)
T ss_dssp             ECSTTSSHHHHHHHHHHHS-T-------TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             ECCCCCCHHHHHHHHHhhC-C-------CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhccccc
Confidence            5999999999999999986 2       56777 654321      12458999998766654321 11111   11111


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHH-----HHHHhhCCCeEEEeCCCCCCCHHHH
Q 007344           71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL-----ACELIASPSVIYADEPTTGLDAFQA  145 (607)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI-----a~aL~~~p~illLDEPtsGLD~~~~  145 (607)
                      .   ..+.    ..++++++...+     ...    ...+|||||||++|     +++++.+|++++|||||+++|..+.
T Consensus       100 ~---g~~~----~~i~~~l~~~~~-----~il----~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~  163 (218)
T 1z6g_A          100 Y---GTLK----SEYDKAKEQNKI-----CLF----EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQ  163 (218)
T ss_dssp             E---EEEH----HHHHHHHHTTCE-----EEE----EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCH
T ss_pred             C---CCcH----HHHHHHHhCCCc-----EEE----EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCH
Confidence            0   1111    235666665433     111    14699999999999     8899999999999999999999999


Q ss_pred             HHHHHHHHHHHh-------cCCeEEEEecCChhHHHhhhcceeee
Q 007344          146 EKVMEALRQLAQ-------DGHTVICSIHQPRGSVYFKFDDIVLL  183 (607)
Q Consensus       146 ~~i~~~L~~la~-------~g~tvi~~~H~p~~~i~~~~D~v~lL  183 (607)
                      ..+.+.++++.+       .+.+.|+++|++ .+.+...|+++.-
T Consensus       164 ~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~-~ea~~~~~~ii~~  207 (218)
T 1z6g_A          164 EQIQKRMEQLNIELHEANLLNFNLSIINDDL-TLTYQQLKNYLLN  207 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCSEEEECSSH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccCCCEEEECCCH-HHHHHHHHHHHHH
Confidence            999998887643       356677777774 4566666766543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.57  E-value=1.5e-16  Score=179.94  Aligned_cols=156  Identities=20%  Similarity=0.209  Sum_probs=104.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC-CCCCccceEEEECCeeCC--------CccceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA-SPRLHLSGLLEVNGKPSS--------NKAYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~-~~~~~~~G~I~~~G~~~~--------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +|||||||||||++|+|+..| +     +|.|+++|.++.        ..+.++||++|+..+++.+||+|++.++....
T Consensus        51 vG~nGsGKSTLL~~I~Gl~~P~~-----sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~  125 (608)
T 3szr_A           51 IGDQSSGKSSVLEALSGVALPRG-----SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI  125 (608)
T ss_dssp             CCCTTSCHHHHHHHHHSCC------------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred             ECCCCChHHHHHHHHhCCCCCCC-----CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence            699999999999999999866 4     799999998741        12346999999999999999999998764321


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC------CCCCCHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEP------TTGLDAFQA  145 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEP------tsGLD~~~~  145 (607)
                      ....                -++                |   ++++.++.+....|+++++|||      |+|||+...
T Consensus       126 ~~~~----------------~~~----------------s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~  170 (608)
T 3szr_A          126 AGEG----------------MGI----------------S---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIG  170 (608)
T ss_dssp             HCSS----------------SCC----------------C---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHH
T ss_pred             cCCc----------------ccc----------------c---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHH
Confidence            0000                011                1   0111222222458999999999      999999999


Q ss_pred             HHHHHHHHHHHh--cCCeEEEEecCChh------HHHhhh-----cceeeecCCeeeeeCCCCC
Q 007344          146 EKVMEALRQLAQ--DGHTVICSIHQPRG------SVYFKF-----DDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       146 ~~i~~~L~~la~--~g~tvi~~~H~p~~------~i~~~~-----D~v~lL~~G~iv~~G~~~~  196 (607)
                      ..+.++++++.+  .+.++++++|+...      .+....     ..|.++.++.++..|+.++
T Consensus       171 ~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~  234 (608)
T 3szr_A          171 YKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDK  234 (608)
T ss_dssp             HHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTC
T ss_pred             HHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHH
Confidence            999999999753  35688888888541      122222     3478888998888887654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.56  E-value=2.7e-16  Score=154.73  Aligned_cols=145  Identities=18%  Similarity=0.162  Sum_probs=85.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCC-CC-ccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASP-RL-HLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~-~~-~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~   78 (607)
                      +||||||||||+++|+|...+.+ .+ .-.|.+.+++.... ...++++++|+..+.+. |+.||+.+            
T Consensus        31 ~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~~~~------------   96 (231)
T 4a74_A           31 FGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EVLKHIYV------------   96 (231)
T ss_dssp             EESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC-CHHHHHHHHHHTTSCHH-HHHHTEEE------------
T ss_pred             ECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC-CHHHHHHHHHHcCCCHH-HHhhcEEE------------
Confidence            59999999999999999544321 11 11345666654311 01123334443332222 33333211            


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHH-HHHHHHHHHHhh-------CCCeEEEeCCCCCCCHHH------
Q 007344           79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE-KKRLSLACELIA-------SPSVIYADEPTTGLDAFQ------  144 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe-rqRvsIa~aL~~-------~p~illLDEPtsGLD~~~------  144 (607)
                                                  ....++++ ++++..+.+++.       +|+++++||||+++|+..      
T Consensus        97 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~  148 (231)
T 4a74_A           97 ----------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGAL  148 (231)
T ss_dssp             ----------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHH
T ss_pred             ----------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcch
Confidence                                        11223333 333555555555       899999999999999842      


Q ss_pred             ------HHHHHHHHHHHH-hcCCeEEEEecCCh---hHHHhhhcceeeecCCe
Q 007344          145 ------AEKVMEALRQLA-QDGHTVICSIHQPR---GSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       145 ------~~~i~~~L~~la-~~g~tvi~~~H~p~---~~i~~~~D~v~lL~~G~  187 (607)
                            ..++++.|++++ +.|.|||+++|...   ..+...+|+++.|++|+
T Consensus       149 ~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          149 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence                  237888888886 45999999999533   23677899999998753

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.56  E-value=4.4e-15  Score=174.10  Aligned_cols=88  Identities=16%  Similarity=0.127  Sum_probs=74.8

Q ss_pred             CCCCCHHHHHHHHHHHHH--hhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHh-cCCeEEEEecCChhHHHhhhcceee
Q 007344          107 VRGISGGEKKRLSLACEL--IASPSVIYADEPTTGLDAFQAEKV-MEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVL  182 (607)
Q Consensus       107 ~~~LSGGerqRvsIa~aL--~~~p~illLDEPtsGLD~~~~~~i-~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~l  182 (607)
                      .+++|+|+++++.+|+++  +++|+++||||||+|||+.....+ ..+++.+++ .|.++|++||+.  ++..++|++..
T Consensus       719 ~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~  796 (934)
T 3thx_A          719 LKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPT  796 (934)
T ss_dssp             ----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTT
T ss_pred             HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccce
Confidence            356899999998888888  999999999999999999999888 667788876 599999999994  46688999999


Q ss_pred             ecCCeeeeeCCCCC
Q 007344          183 LTEGKLVYAGPARD  196 (607)
Q Consensus       183 L~~G~iv~~G~~~~  196 (607)
                      +.+|++.+.++.++
T Consensus       797 v~ng~v~~~~~~~~  810 (934)
T 3thx_A          797 VNNLHVTALTTEET  810 (934)
T ss_dssp             EEEEEEEEEEETTE
T ss_pred             eEeeEEEEEecCCc
Confidence            99999999887765

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.55  E-value=4.6e-18  Score=166.04  Aligned_cols=137  Identities=18%  Similarity=0.164  Sum_probs=105.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCC--CCCCHHHHHHHHHHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFF--SQLTVRETLSLAAELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~--~~lTV~E~l~~~~~~~~~~~~~~   78 (607)
                      +||||||||||+++|+|++.+                      +++|++|++.++  ..+|++++..+...  .+...  
T Consensus        12 ~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~--~~~~~--   65 (211)
T 3asz_A           12 AGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD--HPDAF--   65 (211)
T ss_dssp             EESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--SGGGB--
T ss_pred             ECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC--Chhhh--
Confidence            499999999999999997531                      489999998776  56899888654321  11111  


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHH----HHHHHHHHHhhCCCeEEEeCCCCC-------CCHHHHHH
Q 007344           79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK----KRLSLACELIASPSVIYADEPTTG-------LDAFQAEK  147 (607)
Q Consensus        79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer----qRvsIa~aL~~~p~illLDEPtsG-------LD~~~~~~  147 (607)
                        ..+++.+.++.+++.+..+.     ++..+|+|||    ||++++++++.+|+++++||||++       ||+.....
T Consensus        66 --~~~~~~~~l~~~~~~~~~~~-----~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~  138 (211)
T 3asz_A           66 --DLALYLEHAQALLRGLPVEM-----PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADER  138 (211)
T ss_dssp             --CHHHHHHHHHHHHTTCCEEE-----CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHH
T ss_pred             --hHHHHHHHHHHHHcCCCcCC-----CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHH
Confidence              22456677788877554433     3557899964    788999999999999999999999       99999999


Q ss_pred             HHHHHHHH-HhcCCeEEEEecCCh
Q 007344          148 VMEALRQL-AQDGHTVICSIHQPR  170 (607)
Q Consensus       148 i~~~L~~l-a~~g~tvi~~~H~p~  170 (607)
                      +.+.+++. .+.|+|++.++|+..
T Consensus       139 ~~r~l~r~~~~~g~t~~~~~~~~~  162 (211)
T 3asz_A          139 FIRRLKRDVLERGRSLEGVVAQYL  162 (211)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999886 467999999999743

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.55  E-value=2.3e-16  Score=163.57  Aligned_cols=139  Identities=13%  Similarity=0.079  Sum_probs=100.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----------cceEEEEccCCCCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----------AYKFAYVRQEDLFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~   69 (607)
                      +||||||||||+++|+|+++++     +|+|.++|.+....           +..++|++|+..+.|.+||+|++.++..
T Consensus       108 vG~nGsGKTTll~~Lagll~~~-----~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~  182 (304)
T 1rj9_A          108 VGVNGVGKTTTIAKLGRYYQNL-----GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA  182 (304)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHTT-----TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHHHHhc-----CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence            5999999999999999999886     79999999876432           1248999999988888999999876532


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ...    .        ..+++..|+.+..        .+-++..++||++|||+++.+|+.++|     +||+.+..+++
T Consensus       183 ~~~----d--------~~llDt~G~~~~~--------~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~  237 (304)
T 1rj9_A          183 RGY----D--------LLFVDTAGRLHTK--------HNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGL  237 (304)
T ss_dssp             HTC----S--------EEEECCCCCCTTC--------HHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHH
T ss_pred             CCC----C--------EEEecCCCCCCch--------HHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHH
Confidence            110    0        0122233332211        122455568999999999999995444     55555556677


Q ss_pred             HHHHHHHh-cCCeEEEEecCC
Q 007344          150 EALRQLAQ-DGHTVICSIHQP  169 (607)
Q Consensus       150 ~~L~~la~-~g~tvi~~~H~p  169 (607)
                      +.++++.+ .|.|+|++||+.
T Consensus       238 ~~~~~~~~~~~~t~iivTh~d  258 (304)
T 1rj9_A          238 EQAKKFHEAVGLTGVIVTKLD  258 (304)
T ss_dssp             HHHHHHHHHHCCSEEEEECTT
T ss_pred             HHHHHHHHHcCCcEEEEECCc
Confidence            77888764 489999999985

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.54  E-value=6.1e-17  Score=156.56  Aligned_cols=150  Identities=21%  Similarity=0.196  Sum_probs=98.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||+++|+|.++ +     +| |.++|.....   ..+++||++|+.  ....   +++   +++..     
T Consensus         7 ~G~nG~GKTTll~~l~g~~~-~-----~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~-----   66 (189)
T 2i3b_A            7 TGPPGVGKTTLIHKASEVLK-S-----SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL-----   66 (189)
T ss_dssp             ESCCSSCHHHHHHHHHHHHH-H-----TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC-----
T ss_pred             ECCCCChHHHHHHHHHhhcc-c-----CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc-----
Confidence            59999999999999999987 5     57 7777765532   245799999975  1111   111   11110     


Q ss_pred             HHHHHHHHHHHHHHcCCCcc-ccccccCCcCCCCCHHHHHHH-HHHH---HHhhCCCeEEEeC--CCCCCCHHHHHHHHH
Q 007344           78 VEERDEYVNSLLFKLGLVSC-ADSNVGDAKVRGISGGEKKRL-SLAC---ELIASPSVIYADE--PTTGLDAFQAEKVME  150 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRv-sIa~---aL~~~p~illLDE--PtsGLD~~~~~~i~~  150 (607)
                                     +..+. .+..++ ++...+|+|||+++ ++++   |++.+|+++++||  ||..+|...    ++
T Consensus        67 ---------------~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~----~~  126 (189)
T 2i3b_A           67 ---------------EPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF----IQ  126 (189)
T ss_dssp             ---------------CCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH----HH
T ss_pred             ---------------cCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH----HH
Confidence                           11100 111233 24557999999988 4444   5789999999999  899999865    44


Q ss_pred             HHHHHHhcCCeEEE---E-ecCChhHHHhhhcceeeecCCeeeeeCC
Q 007344          151 ALRQLAQDGHTVIC---S-IHQPRGSVYFKFDDIVLLTEGKLVYAGP  193 (607)
Q Consensus       151 ~L~~la~~g~tvi~---~-~H~p~~~i~~~~D~v~lL~~G~iv~~G~  193 (607)
                      .|+++.+...++|+   + +|+.+   ..+.|+|..+.+|+++....
T Consensus       127 ~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~~  170 (189)
T 2i3b_A          127 AVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVTK  170 (189)
T ss_dssp             HHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECCS
T ss_pred             HHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeCh
Confidence            55555444555553   2 28753   34679999999999987543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.54  E-value=2.5e-15  Score=152.47  Aligned_cols=117  Identities=24%  Similarity=0.328  Sum_probs=84.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+++|+|.+++.    .+|+|.++|.++.       |++|+..-+              .  +.      
T Consensus        31 ~Gp~GsGKSTll~~l~g~~~~~----~~G~I~~~g~~i~-------~~~~~~~~~--------------v--~q------   77 (261)
T 2eyu_A           31 TGPTGSGKSTTIASMIDYINQT----KSYHIITIEDPIE-------YVFKHKKSI--------------V--NQ------   77 (261)
T ss_dssp             ECSTTCSHHHHHHHHHHHHHHH----CCCEEEEEESSCC-------SCCCCSSSE--------------E--EE------
T ss_pred             ECCCCccHHHHHHHHHHhCCCC----CCCEEEEcCCcce-------eecCCccee--------------e--eH------
Confidence            5999999999999999998653    1699999887642       333321100              0  00      


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH  160 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~  160 (607)
                               +.+|+..           ..+      |++||++|..+|+++++||||   |+.+...++   +. ++.|.
T Consensus        78 ---------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g~  124 (261)
T 2eyu_A           78 ---------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETGH  124 (261)
T ss_dssp             ---------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTTC
T ss_pred             ---------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccCC
Confidence                     0233311           112      899999999999999999999   988866544   33 46799


Q ss_pred             eEEEEecCChhHHHhhhcceeeecC
Q 007344          161 TVICSIHQPRGSVYFKFDDIVLLTE  185 (607)
Q Consensus       161 tvi~~~H~p~~~i~~~~D~v~lL~~  185 (607)
                      +|++++|+.+  ....+||++.|..
T Consensus       125 ~vl~t~H~~~--~~~~~dri~~l~~  147 (261)
T 2eyu_A          125 LVFGTLHTNT--AIDTIHRIVDIFP  147 (261)
T ss_dssp             EEEEEECCSS--HHHHHHHHHHTSC
T ss_pred             EEEEEeCcch--HHHHHHHHhhhcC
Confidence            9999999965  5678899988854

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.54  E-value=5.5e-16  Score=183.71  Aligned_cols=138  Identities=19%  Similarity=0.193  Sum_probs=95.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEE-EEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFA-YVRQEDLFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~-yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +||||||||||||+| |++..                    ..++| ||||+..   .+||.|++.              
T Consensus       795 tGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~---~l~v~d~I~--------------  836 (1022)
T 2o8b_B          795 TGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC---RLTPIDRVF--------------  836 (1022)
T ss_dssp             ECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE---EECCCSBEE--------------
T ss_pred             ECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC---CCCHHHHHH--------------
Confidence            599999999999999 87642                    12345 8999753   455555431              


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH-HHHHHHHHHHHhc
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQA-EKVMEALRQLAQD  158 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~-~~i~~~L~~la~~  158 (607)
                                ..+|+.+..+     .....+|++++ ++++|++++++|+++||||||+|+|+... ..+.++|+.++++
T Consensus       837 ----------~rig~~d~~~-----~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~  900 (1022)
T 2o8b_B          837 ----------TRLGASDRIM-----SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAET  900 (1022)
T ss_dssp             ----------EECC--------------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             ----------HHcCCHHHHh-----hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhc
Confidence                      0112211110     01234677665 59999999999999999999999999985 5578899999876


Q ss_pred             -CCeEEEEecCChhHHHhhhcceeeecCCeee--eeCCC
Q 007344          159 -GHTVICSIHQPRGSVYFKFDDIVLLTEGKLV--YAGPA  194 (607)
Q Consensus       159 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv--~~G~~  194 (607)
                       |.++|++||++ ..+...+|++.++ +|++.  +.|++
T Consensus       901 ~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~~~~~~~  937 (1022)
T 2o8b_B          901 IKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMACMVENEC  937 (1022)
T ss_dssp             SCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEEC-----
T ss_pred             CCCEEEEEeCCH-HHHHHhCCcceee-cCeEEEEEecCc
Confidence             99999999996 4566778998887 58887  44543

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.53  E-value=1.7e-14  Score=137.37  Aligned_cols=76  Identities=20%  Similarity=0.291  Sum_probs=66.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhccee
Q 007344          106 KVRGISGGEKKRLSLACELIA----SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIV  181 (607)
Q Consensus       106 ~~~~LSGGerqRvsIa~aL~~----~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~  181 (607)
                      .+..||||||||++||++|+.    +|++++|||||+|||+.+...+.+.|+++++ +.++|+++|++  .+...+|+++
T Consensus        61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~  137 (173)
T 3kta_B           61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKII  137 (173)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEE
Confidence            467899999999999999974    4699999999999999999999999999875 46899999985  4678899998


Q ss_pred             eec
Q 007344          182 LLT  184 (607)
Q Consensus       182 lL~  184 (607)
                      .+.
T Consensus       138 ~v~  140 (173)
T 3kta_B          138 GVS  140 (173)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.53  E-value=2.4e-16  Score=166.36  Aligned_cols=157  Identities=18%  Similarity=0.195  Sum_probs=109.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC------------ccceEEEEccCCCCCCCCCHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------------KAYKFAYVRQEDLFFSQLTVRETLSLAA   68 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~------------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~   68 (607)
                      +||||||||||+++|+|..+++     .|.|.+.|++..+            ..+.+.++.|.+.     ...+.+.-..
T Consensus        77 iG~nGaGKTTLl~~I~g~~~~~-----~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~  146 (347)
T 2obl_A           77 FAGSGVGKSTLLGMICNGASAD-----IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAF  146 (347)
T ss_dssp             EECTTSSHHHHHHHHHHHSCCS-----EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHH
Confidence            5999999999999999999876     7999998865211            1234777777542     2222221111


Q ss_pred             HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .            ...+.+.....+    .|...--..+..+|+|| ||+++|   +.+|++      |+|||+....++
T Consensus       147 ~------------~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l  200 (347)
T 2obl_A          147 T------------ATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSL  200 (347)
T ss_dssp             H------------HHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHH
T ss_pred             H------------HHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHH
Confidence            0            000111111111    01000012456799999 899999   688877      999999999999


Q ss_pred             HHHHHHHHh--cCC-----eEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQ--DGH-----TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~--~g~-----tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .++++++.+  .|.     ||++++|+..   ...||+++++.+|+++..|+.++
T Consensus       201 ~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~  252 (347)
T 2obl_A          201 PKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAE  252 (347)
T ss_dssp             HHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred             HHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHH
Confidence            999999874  577     8999999976   45699999999999998887655

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.52  E-value=1e-14  Score=161.94  Aligned_cols=78  Identities=23%  Similarity=0.311  Sum_probs=71.5

Q ss_pred             cCCCC-CHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceee
Q 007344          106 KVRGI-SGGEKKRLSLACELIASP--SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL  182 (607)
Q Consensus       106 ~~~~L-SGGerqRvsIa~aL~~~p--~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~l  182 (607)
                      .+..| ||||||||+||++|+.+|  ++|+|||||+|||+.++..+.+.|+++++ |+|||++||+|.  +...||++++
T Consensus       393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~  469 (517)
T 4ad8_A          393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK  469 (517)
T ss_dssp             BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred             cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence            46677 999999999999999999  99999999999999999999999999987 899999999974  4456999999


Q ss_pred             ecCC
Q 007344          183 LTEG  186 (607)
Q Consensus       183 L~~G  186 (607)
                      |++|
T Consensus       470 ~~~~  473 (517)
T 4ad8_A          470 VEKQ  473 (517)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9665

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.52  E-value=6.4e-16  Score=172.06  Aligned_cols=148  Identities=16%  Similarity=0.124  Sum_probs=98.7

Q ss_pred             CCCCCCcHHHHHHH--HHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNV--LAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~--LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+++  ++|..+++     +|.|.++|++....    .+.+||++|+....++      +.+   .....
T Consensus        45 ~G~nGsGKSTL~~~~ll~Gl~~~~-----~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~------l~~---~~~~~  110 (525)
T 1tf7_A           45 SGTSGTGKTLFSIQFLYNGIIEFD-----EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK------LFI---LDASP  110 (525)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHHHC-----CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS------EEE---EECCC
T ss_pred             EcCCCCCHHHHHHHHHHHHHHhCC-----CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc------EEE---EecCc
Confidence            59999999999999  78998766     79999999874221    2458999987542211      100   00000


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC-----CCCHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT-----GLDAFQAEKVM  149 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPts-----GLD~~~~~~i~  149 (607)
                        .     +...++++.++|.+..     ++.++.||||             +|+++++||||+     +||+..+..+.
T Consensus       111 --~-----~~~~~~l~~~~l~~~~-----~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~  165 (525)
T 1tf7_A          111 --D-----PEGQEVVGGFDLSALI-----ERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELF  165 (525)
T ss_dssp             --C-----SSCCSCCSSHHHHHHH-----HHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHH
T ss_pred             --c-----cchhhhhcccCHHHHH-----HHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHH
Confidence              0     0001111222221111     1122345554             588999999998     56999999999


Q ss_pred             HHHHHHHhcCCeEEEEecCChhH--------HHhhhcceeeecCCe
Q 007344          150 EALRQLAQDGHTVICSIHQPRGS--------VYFKFDDIVLLTEGK  187 (607)
Q Consensus       150 ~~L~~la~~g~tvi~~~H~p~~~--------i~~~~D~v~lL~~G~  187 (607)
                      ++++++++.|.|||+++|++...        ...+||+|++|++|+
T Consensus       166 ~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~  211 (525)
T 1tf7_A          166 RLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL  211 (525)
T ss_dssp             HHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred             HHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence            99999998899999999998643        345699999998844

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.51  E-value=2.5e-15  Score=173.08  Aligned_cols=130  Identities=20%  Similarity=0.195  Sum_probs=91.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcC-CCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLM-ASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~-~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +||||||||||||+|+|... +.     .|.+.      .....++++++|   +++.+|+.|++.              
T Consensus       582 ~GpNGsGKSTlLr~iagl~~~~~-----~G~~v------pa~~~~i~~v~~---i~~~~~~~d~l~--------------  633 (765)
T 1ewq_A          582 TGPNMAGKSTFLRQTALIALLAQ-----VGSFV------PAEEAHLPLFDG---IYTRIGASDDLA--------------  633 (765)
T ss_dssp             ESCSSSSHHHHHHHHHHHHHHHT-----TTCCB------SSSEEEECCCSE---EEEECCC-------------------
T ss_pred             ECCCCCChHHHHHHHHhhhhhcc-----cCcee------ehhccceeeHHH---hhccCCHHHHHH--------------
Confidence            59999999999999999863 33     34421      122345788776   455566655431              


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHH--hhCCCeEEEeCC---CCCCCHHHH-HHHHHHHH
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACEL--IASPSVIYADEP---TTGLDAFQA-EKVMEALR  153 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL--~~~p~illLDEP---tsGLD~~~~-~~i~~~L~  153 (607)
                                                  .++|+|+++++.+++++  +++|++++||||   |++||..+. ..+++.|+
T Consensus       634 ----------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~  685 (765)
T 1ewq_A          634 ----------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALH  685 (765)
T ss_dssp             -----------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHH
Confidence                                        14789999999999999  999999999999   999998875 56777776


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP  193 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~  193 (607)
                      +   .|.|+|++||+.  ++..++  .--+.++++.....
T Consensus       686 ~---~g~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~~~  718 (765)
T 1ewq_A          686 E---RRAYTLFATHYF--ELTALG--LPRLKNLHVAAREE  718 (765)
T ss_dssp             H---HTCEEEEECCCH--HHHTCC--CTTEEEEEEEEECC
T ss_pred             h---CCCEEEEEeCCH--HHHHhh--hhcceEEEEEEEEc
Confidence            6   589999999995  344444  22344566655544

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.51  E-value=7.9e-17  Score=166.96  Aligned_cols=140  Identities=15%  Similarity=0.123  Sum_probs=80.7

Q ss_pred             CCCCCCcHHHHHHHHHcC-cCCCCCCccceEEEECCeeCCCc--cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQ-LMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~-~~~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||+|||||+|+|+|. ..+.     +| |.++|.+....  ...+++++|++.....+||.|+..+.....     .
T Consensus        24 vG~nG~GKSTLl~~L~g~~~~~~-----~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~-----~   92 (301)
T 2qnr_A           24 VGESGLGKSTLINSLFLTDLYPE-----RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAIN-----C   92 (301)
T ss_dssp             EEETTSSHHHHHHHHHC------------------------------CEEEEC---CCEEEEEEEEC-------------
T ss_pred             ECCCCCCHHHHHHHHhCCCccCC-----CC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcC-----c
Confidence            699999999999999997 5554     67 77777665332  235899999988888899999987754321     0


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHH
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT-GLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPts-GLD~~~~~~i~~~L~~la  156 (607)
                      .+..+..++.+.+.+           +.+.+++|||||||+.+|++++    ++++||||+ |||+...    +.++++.
T Consensus        93 ~e~~~~l~~~l~~~~-----------~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~  153 (301)
T 2qnr_A           93 RDCFKTIISYIDEQF-----------ERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIH  153 (301)
T ss_dssp             ---CTTHHHHHHHHH-----------HHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHT
T ss_pred             HHHHHHHHHHHHHHH-----------HHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHH
Confidence            011111122221111           2345689999999999888875    999999998 5999873    5666665


Q ss_pred             h-cCCeEEEEecCCh
Q 007344          157 Q-DGHTVICSIHQPR  170 (607)
Q Consensus       157 ~-~g~tvi~~~H~p~  170 (607)
                      + .+.++|++.||..
T Consensus       154 ~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          154 NKVNIVPVIAKADTL  168 (301)
T ss_dssp             TTSCEEEEECCGGGS
T ss_pred             hcCCEEEEEEeCCCC
Confidence            4 3678999999864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.50  E-value=5e-16  Score=155.81  Aligned_cols=135  Identities=16%  Similarity=0.133  Sum_probs=91.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+++|+|++         |.+.++     ...+.++|++|++ +++.+|+.|++.+....... ..+...
T Consensus        31 ~G~~GsGKSTl~k~L~~~l---------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~-~~~~~~   94 (245)
T 2jeo_A           31 SGGTASGKSTVCEKIMELL---------GQNEVE-----QRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNF-DHPDAF   94 (245)
T ss_dssp             ECSTTSSHHHHHHHHHHHH---------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCT-TSGGGB
T ss_pred             ECCCCCCHHHHHHHHHHHh---------chhccc-----ccCCceEEEeCCc-CccccCHhHhhhhhccCCCC-CCcccc
Confidence            4999999999999999965         222233     2345699999985 77789999998775432210 001111


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH  160 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~  160 (607)
                      ..+.+.+.++.+  .+..     +..+..+|+||+||+.+ ++++.+|+++++|||....|..        +.++  .+.
T Consensus        95 ~~~~~~~~L~~l--~~~~-----~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~  156 (245)
T 2jeo_A           95 DNDLMHRTLKNI--VEGK-----TVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHL  156 (245)
T ss_dssp             CHHHHHHHHHHH--HTTC-----CEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSE
T ss_pred             cHHHHHHHHHHH--HCCC-----CeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCe
Confidence            122344444443  2222     23567899999999988 5788899999999998888764        2222  378


Q ss_pred             eEEEEecCC
Q 007344          161 TVICSIHQP  169 (607)
Q Consensus       161 tvi~~~H~p  169 (607)
                      +|++++|+.
T Consensus       157 ~i~v~th~~  165 (245)
T 2jeo_A          157 RLFVDTDSD  165 (245)
T ss_dssp             EEEEECCHH
T ss_pred             EEEEECCHH
Confidence            999999973

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.50  E-value=7.6e-16  Score=162.77  Aligned_cols=151  Identities=18%  Similarity=0.146  Sum_probs=90.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc--CCCCCCccceE-EEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGL-LEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~--~~~~~~~~~G~-I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||++.|++..  +++. +...|. |+++++... ...++++++|...+++. ++.||+.+..      .. 
T Consensus       137 ~G~~GsGKTTL~~~l~~~~~~~~~~-Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~v~~ni~~~~------~~-  206 (349)
T 1pzn_A          137 FGEFGSGKTQLAHTLAVMVQLPPEE-GGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EVLKHIYVAR------AF-  206 (349)
T ss_dssp             EESTTSSHHHHHHHHHHHTTSCGGG-TSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-HHGGGEEEEE------CC-
T ss_pred             ECCCCCCHHHHHHHHHHHhccchhc-CCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-HHhhCEEEEe------cC-
Confidence            4999999999999999987  3331 112367 788876531 12345566665544332 3333332210      00 


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHh-------hCCCeEEEeCCCCCCCHHH------
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI-------ASPSVIYADEPTTGLDAFQ------  144 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~-------~~p~illLDEPtsGLD~~~------  144 (607)
                                                      -|++++|++.++++++       .+|+++++||||+++|+..      
T Consensus       207 --------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~  254 (349)
T 1pzn_A          207 --------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGAL  254 (349)
T ss_dssp             --------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTH
T ss_pred             --------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccH
Confidence                                            1455666666666666       6899999999999999852      


Q ss_pred             ------HHHHHHHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCC
Q 007344          145 ------AEKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA  194 (607)
Q Consensus       145 ------~~~i~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~  194 (607)
                            ..++++.|+++++ .|.|||+++|... .....++.......|+++.++..
T Consensus       255 ~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~~  310 (349)
T 1pzn_A          255 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSAT  310 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecCc
Confidence                  4567777788774 5899999999854 44444556667778888877653

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.48  E-value=2.4e-14  Score=151.55  Aligned_cols=85  Identities=14%  Similarity=0.165  Sum_probs=76.6

Q ss_pred             CCcCC-CCCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHH
Q 007344          104 DAKVR-GISGGEKKRLSLACELI---------ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV  173 (607)
Q Consensus       104 ~~~~~-~LSGGerqRvsIa~aL~---------~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i  173 (607)
                      +..++ .+|||||||++||++|+         .+|+||+|||||++||+..+..+++.++++.   .|+|+++|. ..  
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~--  332 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP--  332 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence            44566 79999999999999999         8999999999999999999999999998874   689999994 32  


Q ss_pred             HhhhcceeeecCCeeeeeCCCCC
Q 007344          174 YFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       174 ~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                        .+|+++++++|+++..|++++
T Consensus       333 --~~~~i~~l~~G~i~~~g~~~~  353 (359)
T 2o5v_A          333 --GAALTLRAQAGRFTPVADEEM  353 (359)
T ss_dssp             --TCSEEEEEETTEEEECCCTTT
T ss_pred             --cCCEEEEEECCEEEecCCHHH
Confidence              789999999999999999876

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.47  E-value=1.4e-14  Score=153.21  Aligned_cols=117  Identities=24%  Similarity=0.293  Sum_probs=80.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +|||||||||||++|+|.++++.    +|.|...+.+.... ....+++.|.......+|..+                 
T Consensus       129 ~GptGSGKTTlL~~l~g~~~~~~----~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~-----------------  187 (356)
T 3jvv_A          129 TGPTGSGKSTTLAAMLDYLNNTK----YHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSE-----------------  187 (356)
T ss_dssp             ECSTTSCHHHHHHHHHHHHHHHC----CCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH-----------------
T ss_pred             ECCCCCCHHHHHHHHHhcccCCC----CcEEEEccCcHHhhhhccccceeeeeeccccCCHHH-----------------
Confidence            59999999999999999987641    35554433333211 122345555432222122111                 


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                                                             +||++|..+|++|++||||   |..+    ++.+.++++.|
T Consensus       188 ---------------------------------------~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G  221 (356)
T 3jvv_A          188 ---------------------------------------ALRSALREDPDIILVGEMR---DLET----IRLALTAAETG  221 (356)
T ss_dssp             ---------------------------------------HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTT
T ss_pred             ---------------------------------------HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcC
Confidence                                                   8999999999999999999   6555    44445557789


Q ss_pred             CeEEEEecCChhHHHhhhcceeeecCC
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLTEG  186 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G  186 (607)
                      ++|++++|+.+ .+ ..+||++.|..|
T Consensus       222 ~~vl~t~H~~~-~~-~~~dRli~l~~~  246 (356)
T 3jvv_A          222 HLVFGTLHTTS-AA-KTIDRVVDVFPA  246 (356)
T ss_dssp             CEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred             CEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence            99999999975 34 778999999654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.47  E-value=1e-13  Score=141.60  Aligned_cols=141  Identities=17%  Similarity=0.144  Sum_probs=95.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||++.|++...       .|++ +.|.+... ..++.|+..++..   ..+.+.+.   .+.  .....  
T Consensus        36 ~G~~GsGKTtl~~~l~~~~~-------~g~~-~~g~~~~~-~~~v~~~~~e~~~---~~~~~r~~---~~g--~~~~~--   96 (279)
T 1nlf_A           36 VSPGGAGKSMLALQLAAQIA-------GGPD-LLEVGELP-TGPVIYLPAEDPP---TAIHHRLH---ALG--AHLSA--   96 (279)
T ss_dssp             EESTTSSHHHHHHHHHHHHH-------TCCC-TTCCCCCC-CCCEEEEESSSCH---HHHHHHHH---HHH--TTSCH--
T ss_pred             EcCCCCCHHHHHHHHHHHHh-------cCCC-cCCCccCC-CccEEEEECCCCH---HHHHHHHH---HHH--hhcCh--
Confidence            49999999999999998653       2443 23433321 2357888776532   01212211   111  11222  


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC--CCCHHHH---HHHHHHHHHH
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT--GLDAFQA---EKVMEALRQL  155 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPts--GLD~~~~---~~i~~~L~~l  155 (607)
                        ..++++++.+++.+..     +..+..+|+||++++   ++++.+|+++++||||+  ++|....   .++++.|+++
T Consensus        97 --~~~~~~~~~l~l~~~~-----~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l  166 (279)
T 1nlf_A           97 --EERQAVADGLLIQPLI-----GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAI  166 (279)
T ss_dssp             --HHHHHHHHHEEECCCT-----TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHH
T ss_pred             --hhhhhccCceEEeecC-----CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHH
Confidence              2355677888886543     335678999998876   58889999999999999  9998544   8888999998


Q ss_pred             H-hcCCeEEEEecCCh
Q 007344          156 A-QDGHTVICSIHQPR  170 (607)
Q Consensus       156 a-~~g~tvi~~~H~p~  170 (607)
                      + +.|.|||+++|+..
T Consensus       167 ~~~~g~tvi~i~H~~~  182 (279)
T 1nlf_A          167 AADTGCSIVFLHHASK  182 (279)
T ss_dssp             HHHHCCEEEEEEEC--
T ss_pred             HHHcCCEEEEEecCCC
Confidence            7 56999999999853

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.44  E-value=1.8e-14  Score=166.82  Aligned_cols=140  Identities=12%  Similarity=0.086  Sum_probs=94.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||||+|+|......    .|      ..+.....+++++.|   +++.+++.|++...             
T Consensus       613 tGpNGsGKSTlLr~iagl~~~~q----~G------~~vpa~~~~i~~~~~---i~~~~~~~d~l~~~-------------  666 (800)
T 1wb9_A          613 TGPNMGGKSTYMRQTALIALMAY----IG------SYVPAQKVEIGPIDR---IFTRVGAADDLASG-------------  666 (800)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHHT----TT------CCBSSSEEEECCCCE---EEEEEC---------------------
T ss_pred             ECCCCCChHHHHHHHHHHHHHHh----cC------cccchhcccceeHHH---HHhhCCHHHHHHhh-------------
Confidence            59999999999999999742210    12      111112234666655   45556665554221             


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHh-c
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV-MEALRQLAQ-D  158 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i-~~~L~~la~-~  158 (607)
                                   +             ..+|+|++ +++.+...+++|+++|||||++|+|+.....+ ..+++.+++ .
T Consensus       667 -------------~-------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~  719 (800)
T 1wb9_A          667 -------------R-------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI  719 (800)
T ss_dssp             -----------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTT
T ss_pred             -------------h-------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhcc
Confidence                         1             13566655 45555567899999999999999999888776 788888887 5


Q ss_pred             CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCC
Q 007344          159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPAR  195 (607)
Q Consensus       159 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~  195 (607)
                      |.++|++||++.  +..++|++..+.+|++.+....+
T Consensus       720 g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~~~  754 (800)
T 1wb9_A          720 KALTLFATHYFE--LTQLPEKMEGVANVHLDALEHGD  754 (800)
T ss_dssp             CCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEETT
T ss_pred             CCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEcCC
Confidence            999999999963  45689999888999887765433

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.44  E-value=1e-14  Score=143.23  Aligned_cols=78  Identities=12%  Similarity=0.031  Sum_probs=65.3

Q ss_pred             CCCHHHHHHHHHHHHHhhCCC--eEEEeCCCCCC--CHHHHHHHHHHHHHHH-hcCCeEEEEecCCh-------hHHHhh
Q 007344          109 GISGGEKKRLSLACELIASPS--VIYADEPTTGL--DAFQAEKVMEALRQLA-QDGHTVICSIHQPR-------GSVYFK  176 (607)
Q Consensus       109 ~LSGGerqRvsIa~aL~~~p~--illLDEPtsGL--D~~~~~~i~~~L~~la-~~g~tvi~~~H~p~-------~~i~~~  176 (607)
                      ..|.+|+++...+.....+|+  ++++||||+++  |+....++++.|++++ +.|.|||+++|+..       ..+...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~  182 (235)
T 2w0m_A          103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV  182 (235)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence            459999998888888788999  99999999887  9999999999999997 45899999999973       347788


Q ss_pred             hcceeeecCC
Q 007344          177 FDDIVLLTEG  186 (607)
Q Consensus       177 ~D~v~lL~~G  186 (607)
                      +|++++|+..
T Consensus       183 ~d~vi~l~~~  192 (235)
T 2w0m_A          183 ADGIIRFRRM  192 (235)
T ss_dssp             CSEEEEEEEE
T ss_pred             eeEEEEEEEE
Confidence            9999999754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.43  E-value=2.1e-16  Score=151.57  Aligned_cols=165  Identities=14%  Similarity=0.102  Sum_probs=107.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+++|++.   .     +|.+.++|.+.... ...++++|.....+..|+++++.+.+.......     
T Consensus         8 ~G~~GaGKSTl~~~L~~~---~-----~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----   73 (189)
T 2bdt_A            8 TGPAGVGKSTTCKRLAAQ---L-----DNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ-----   73 (189)
T ss_dssp             ECSTTSSHHHHHHHHHHH---S-----SSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred             ECCCCCcHHHHHHHHhcc---c-----CCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHhcC-----
Confidence            599999999999999972   2     58899988765332 235677776544555688888876543210000     


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCC--CHHHHHHHHHHH------HHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGI--SGGEKKRLSLAC------ELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L--SGGerqRvsIa~------aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                          ...+++.+..     . ...+..+.+  |+|++||+.++.      +++.+|+...+|+   |||+..... .+.+
T Consensus        74 ----~~~ild~~~~-----~-~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~  139 (189)
T 2bdt_A           74 ----NDVVLDYIAF-----P-DEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEF  139 (189)
T ss_dssp             ----CEEEEESCCC-----H-HHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHH
T ss_pred             ----CcEEEeeccC-----H-HHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHH
Confidence                0000110000     0 000111234  888888888888      9999999888884   899988888 8888


Q ss_pred             HHHHhcCCeEEEEecC-ChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQDGHTVICSIHQ-PRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~-p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.+.+.+.++|.++|. +. ++.+.+|+|+  ++|+++..|+++.
T Consensus       140 ~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~  181 (189)
T 2bdt_A          140 ESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDP  181 (189)
T ss_dssp             HHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC-----
T ss_pred             hhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCc
Confidence            8887678899999998 64 6788899998  9999999998765

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.42  E-value=1e-13  Score=162.18  Aligned_cols=80  Identities=11%  Similarity=0.090  Sum_probs=65.7

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHh-cCCeEEEEecCChhHHHhhhcceee-ec
Q 007344          108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM-EALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVL-LT  184 (607)
Q Consensus       108 ~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~-~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~l-L~  184 (607)
                      ..+|+|++|++.|+++ +++|+++||||||+|||+.....+. .+++.+++ .|.|+|++||++  ++..++|+.-- +.
T Consensus       734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v~  810 (918)
T 3thx_B          734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQVG  810 (918)
T ss_dssp             CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTEE
T ss_pred             HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccceE
Confidence            4689999999999998 8999999999999999999999997 78888875 699999999996  34566776532 44


Q ss_pred             CCeeee
Q 007344          185 EGKLVY  190 (607)
Q Consensus       185 ~G~iv~  190 (607)
                      ++++.+
T Consensus       811 n~~~~~  816 (918)
T 3thx_B          811 NYHMGF  816 (918)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555544

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.39  E-value=7.4e-13  Score=140.93  Aligned_cols=77  Identities=27%  Similarity=0.340  Sum_probs=67.7

Q ss_pred             CcCCCCCHHHHHHH------HHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhh
Q 007344          105 AKVRGISGGEKKRL------SLACELIAS-PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF  177 (607)
Q Consensus       105 ~~~~~LSGGerqRv------sIa~aL~~~-p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~  177 (607)
                      ..++.+|||||||+      ++|++|+.+ |++++|||||+|||+..+..+.+.|+++.+ +.+||+++|++.  +...+
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~  352 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVA  352 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGC
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhC
Confidence            45678999999988      567888999 999999999999999999999999999753 468999999974  56889


Q ss_pred             cceeeec
Q 007344          178 DDIVLLT  184 (607)
Q Consensus       178 D~v~lL~  184 (607)
                      |++++++
T Consensus       353 d~~~~l~  359 (371)
T 3auy_A          353 DVIINVK  359 (371)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            9999996

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.32  E-value=7.8e-13  Score=128.95  Aligned_cols=77  Identities=16%  Similarity=0.131  Sum_probs=60.2

Q ss_pred             CCHHH--HHHHHHHHHHhhC-CCeEEEeCCCCCCCHHH--------HHHHHHHHHHHHh-cCCeEEEEecCChh------
Q 007344          110 ISGGE--KKRLSLACELIAS-PSVIYADEPTTGLDAFQ--------AEKVMEALRQLAQ-DGHTVICSIHQPRG------  171 (607)
Q Consensus       110 LSGGe--rqRvsIa~aL~~~-p~illLDEPtsGLD~~~--------~~~i~~~L~~la~-~g~tvi~~~H~p~~------  171 (607)
                      .|+++  ++++..+++++.+ |+++++||||+++|+..        ..++++.|+++++ .|.|||+++|....      
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~  164 (220)
T 2cvh_A           85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT  164 (220)
T ss_dssp             CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred             cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence            44453  5688888899986 99999999999999743        3556777888875 48999999997542      


Q ss_pred             ------HHHhhhcceeeecCC
Q 007344          172 ------SVYFKFDDIVLLTEG  186 (607)
Q Consensus       172 ------~i~~~~D~v~lL~~G  186 (607)
                            .+...+|.+++|+..
T Consensus       165 ~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          165 KPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             CSCCCHHHHHTSSEEEEEEEC
T ss_pred             ccCCCcceeecCcEEEEEEEe
Confidence                  567889999999754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.31  E-value=1.5e-15  Score=152.29  Aligned_cols=144  Identities=22%  Similarity=0.226  Sum_probs=94.9

Q ss_pred             CCCCCCcHHHHHHHHH---cCcCCCCCCccceEEEECCeeCCCc-cceEEEEccCCCCCCCCCHHHHHHHHHHccCC---
Q 007344            1 MGPSGSGKTTLLNVLA---GQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP---   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~La---G~~~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---   73 (607)
                      +||||||||||+++|+   |...++     .|+|.++|.+.... ...+.+++|+..+++..|+.|++.........   
T Consensus        33 ~G~~GsGKSTl~k~La~~lg~~~~~-----~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~  107 (246)
T 2bbw_A           33 LGPPGSGKGTVCQRIAQNFGLQHLS-----SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQHW  107 (246)
T ss_dssp             ECCTTSSHHHHHHHHHHHHCCCCEE-----HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSCE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCeEec-----HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Confidence            5999999999999999   987765     78887776543221 22356677888888888999999875421000   


Q ss_pred             --CCCCHHHHHHHHHHHHH--HcCCCccc-------cccccCCcCCCCCHHHHHHHHHHHHH-hhCCCeEEEe----CCC
Q 007344           74 --EILSVEERDEYVNSLLF--KLGLVSCA-------DSNVGDAKVRGISGGEKKRLSLACEL-IASPSVIYAD----EPT  137 (607)
Q Consensus        74 --~~~~~~~~~~~v~~~l~--~lgL~~~~-------d~~vg~~~~~~LSGGerqRvsIa~aL-~~~p~illLD----EPt  137 (607)
                        .......  ..++.+.+  .+++.-..       -..+.++.+..|||    |+   +++ +.+|+++++|    |||
T Consensus       108 il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~  178 (246)
T 2bbw_A          108 LLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPL  178 (246)
T ss_dssp             EEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBC
T ss_pred             EEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccccc
Confidence              0111111  11222221  12200000       01223445678999    66   677 9999999999    999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhc
Q 007344          138 TGLDAFQAEKVMEALRQLAQD  158 (607)
Q Consensus       138 sGLD~~~~~~i~~~L~~la~~  158 (607)
                      +|||..+...+.+.++++.++
T Consensus       179 ~~ld~~~~~~i~~~l~~~~~~  199 (246)
T 2bbw_A          179 VQQEDDKPEAVAARLRQYKDV  199 (246)
T ss_dssp             BCCGGGSHHHHHHHHHHHHHH
T ss_pred             ccCCCCcHHHHHHHHHHHHHh
Confidence            999999999999999988765

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.31  E-value=2.8e-16  Score=164.07  Aligned_cols=147  Identities=17%  Similarity=0.131  Sum_probs=94.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc--------CCCCCCccceEEEECCeeCCCcc--------------------ceEEEE---c
Q 007344            1 MGPSGSGKTTLLNVLAGQL--------MASPRLHLSGLLEVNGKPSSNKA--------------------YKFAYV---R   49 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~--------~~~~~~~~~G~I~~~G~~~~~~~--------------------~~i~yv---~   49 (607)
                      +|+||||||||||.|.|..        .++     .|+|.++|.++....                    ..++++   +
T Consensus        10 ~G~~GaGKTTll~~l~~~~~~~~~aVi~~d-----~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~   84 (318)
T 1nij_A           10 TGFLGAGKTTLLRHILNEQHGYKIAVIENE-----FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL   84 (318)
T ss_dssp             EESSSSSCHHHHHHHHHSCCCCCEEEECSS-----CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred             EecCCCCHHHHHHHHHhhcCCCcEEEEEec-----CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence            4999999999999999986        334     688999988764321                    225666   5


Q ss_pred             cCCCCCCCCCHHHHHHHHHHccCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhh
Q 007344           50 QEDLFFSQLTVRETLSLAAELQLPEI---LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA  126 (607)
Q Consensus        50 Q~~~l~~~lTV~E~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~  126 (607)
                      |+..+++..+|.||..++........   .+......+++.++..+++.+..+..      .++|+||+||+..++.++.
T Consensus        85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~  158 (318)
T 1nij_A           85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT  158 (318)
T ss_dssp             HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred             hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence            66655566677776543210000000   00000011122233334443333221      2689999999998898889


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCCh
Q 007344          127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR  170 (607)
Q Consensus       127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~  170 (607)
                      +|+++  |||         .++.+.++++. .+.+|++++|.+.
T Consensus       159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~  190 (318)
T 1nij_A          159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI  190 (318)
T ss_dssp             CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred             CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence            99987  998         77888888875 5889999999864

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.30  E-value=3.4e-12  Score=138.38  Aligned_cols=76  Identities=21%  Similarity=0.254  Sum_probs=68.9

Q ss_pred             CCCCCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceee
Q 007344          107 VRGISGGEKKRLSLACELI----ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL  182 (607)
Q Consensus       107 ~~~LSGGerqRvsIa~aL~----~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~l  182 (607)
                      +..||||||||++||++|+    .+|++++|||||++||+..+..+.+.|+++.++|.++|+++|++  .....+|+++.
T Consensus       331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~  408 (430)
T 1w1w_A          331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG  408 (430)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEE
Confidence            3459999999999999999    57999999999999999999999999999876688999999994  45678999999


Q ss_pred             ec
Q 007344          183 LT  184 (607)
Q Consensus       183 L~  184 (607)
                      +.
T Consensus       409 ~~  410 (430)
T 1w1w_A          409 VY  410 (430)
T ss_dssp             EE
T ss_pred             EE
Confidence            95

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.29  E-value=1.1e-13  Score=149.27  Aligned_cols=137  Identities=18%  Similarity=0.146  Sum_probs=78.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +|+||||||||+|+|+|...+..+   .|.+.+++.+ ......+++++|++.+++.+||.||+.+.....      ..+
T Consensus        37 vG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~  106 (418)
T 2qag_C           37 VGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSN  106 (418)
T ss_dssp             ECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEECC------CEEEEEEECC----------------
T ss_pred             ECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chh
Confidence            699999999999999998764321   2222222211 111245899999988888899999988764321      011


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCC---eEEEeCCC-CCCCHHHHHHHHHHHHHHH
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS---VIYADEPT-TGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~---illLDEPt-sGLD~~~~~~i~~~L~~la  156 (607)
                      ..+.+.+.++                 ..++.+++||++||++++.+|+   ++++|||| +|||+...    +.++++.
T Consensus       107 ~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~  165 (418)
T 2qag_C          107 CWQPVIDYID-----------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH  165 (418)
T ss_dssp             -CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT
T ss_pred             hHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh
Confidence            1111111121                 1355677889999999999999   99999999 69998873    4445554


Q ss_pred             hcCCeEEEEecCC
Q 007344          157 QDGHTVICSIHQP  169 (607)
Q Consensus       157 ~~g~tvi~~~H~p  169 (607)
                      . +.++|+++|..
T Consensus       166 ~-~v~iIlVinK~  177 (418)
T 2qag_C          166 E-KVNIIPLIAKA  177 (418)
T ss_dssp             T-TSEEEEEEEST
T ss_pred             c-cCcEEEEEEcc
Confidence            4 77888887763

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.29  E-value=5e-14  Score=139.19  Aligned_cols=125  Identities=14%  Similarity=0.156  Sum_probs=85.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-cceEEEEccCCCCCCCCCH----HHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTV----RETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV----~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|..+++   ...|.|.+++.+.... ...++|++|++..|+.+|+    .|++.+....     
T Consensus        22 ~GpsGsGKSTLlk~L~g~~~p~---~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~-----   93 (219)
T 1s96_A           22 SAPSGAGKSSLIQALLKTQPLY---DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY-----   93 (219)
T ss_dssp             ECCTTSCHHHHHHHHHHHSCTT---TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE-----
T ss_pred             ECCCCCCHHHHHHHHhccCCCC---ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc-----
Confidence            5999999999999999998752   2478999988765433 3458999998665554444    2222211100     


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                                                      .+.|   +++   ..+++..+++++||     ||+..+..+.+.+.  
T Consensus        94 --------------------------------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~--  128 (219)
T 1s96_A           94 --------------------------------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP--  128 (219)
T ss_dssp             --------------------------------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT--
T ss_pred             --------------------------------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc--
Confidence                                            0111   111   33445567999999     99999999999876  


Q ss_pred             HhcCCeEEEEecCChhHHHhhhcceeeecCC
Q 007344          156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEG  186 (607)
Q Consensus       156 a~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G  186 (607)
                        ++.||++++|++. .+..   |+  +.+|
T Consensus       129 --~~~tI~i~th~~~-~l~~---Rl--~~rG  151 (219)
T 1s96_A          129 --HARSIFILPPSKI-ELDR---RL--RGRG  151 (219)
T ss_dssp             --TCEEEEEECSSHH-HHHH---HH--HTTS
T ss_pred             --CCEEEEEECCCHH-HHHH---HH--HHcC
Confidence              5889999999964 3332   43  6666

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.27  E-value=1.7e-12  Score=137.03  Aligned_cols=123  Identities=23%  Similarity=0.165  Sum_probs=85.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcC-CCCCCccceEEEEC-CeeCCC-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM-ASPRLHLSGLLEVN-GKPSSN-KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~-~~~~~~~~G~I~~~-G~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||+|+|+|... +.     +|+|.++ |..... ....+++++|+..++++.||+|+     .+   ...+
T Consensus       221 vG~sG~GKSTLln~L~g~~~~~~-----~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~-----~l---~~l~  287 (358)
T 2rcn_A          221 AGQSGVGKSSLLNALLGLQNEIL-----TNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF-----GL---WHLE  287 (358)
T ss_dssp             ECCTTSSHHHHHHHHHCCSSCCC-----CC-------------CCCEEEECTTSCEEEECHHHHTC-----CC---CCCC
T ss_pred             ECCCCccHHHHHHHHhccccccc-----cCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh-----hh---cCCC
Confidence            69999999999999999987 65     7999887 654422 23569999999999999899884     11   1345


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      .++..+.+.++++.+|+.+..|     ..+.++| ||+||++||+++               +++.-.....++++++++
T Consensus       288 ~~e~~~~~~e~l~~~gl~~f~~-----~~~~~lS-G~~~r~ala~gl---------------i~~~R~~~y~~l~~e~~~  346 (358)
T 2rcn_A          288 PEQITQGFVEFHDYLGHCKYRD-----CKHDADP-GCAIREAVENGA---------------IAETRFENYHRILESMAQ  346 (358)
T ss_dssp             HHHHHHTSGGGGGGTTCSSSTT-----CCSSSCT-TCHHHHHHHHTS---------------SCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHcCCchhcC-----CCcccCC-HHHHHHHHHhcC---------------CCHHHHHHHHHHHHHHHh
Confidence            6666777889999999965554     4567899 999999999864               344445555666676653

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.27  E-value=2.3e-15  Score=160.00  Aligned_cols=85  Identities=9%  Similarity=-0.106  Sum_probs=61.5

Q ss_pred             CCCCHHHHHHHHHHHHHh-hCCCeEEEeC---CC------CCCCHHHHHHHHHHHHHHH-hcCCeEEEEecCChhHHHhh
Q 007344          108 RGISGGEKKRLSLACELI-ASPSVIYADE---PT------TGLDAFQAEKVMEALRQLA-QDGHTVICSIHQPRGSVYFK  176 (607)
Q Consensus       108 ~~LSGGerqRvsIa~aL~-~~p~illLDE---Pt------sGLD~~~~~~i~~~L~~la-~~g~tvi~~~H~p~~~i~~~  176 (607)
                      ..+|+|+++|..+++++. .+|++++|||   |+      .++|...+..+.+.|+++. +.|.++++++|. . ....+
T Consensus       257 ~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~  334 (365)
T 1lw7_A          257 FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRY  334 (365)
T ss_dssp             HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHH
T ss_pred             HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHH
Confidence            346777788888888775 5999999999   65      5899999999999999976 458899999874 3 56677


Q ss_pred             hcceeeecCCeeeeeCCCCC
Q 007344          177 FDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       177 ~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +|++.++++  ++..|..++
T Consensus       335 ~~~i~~i~~--~l~~~~~~~  352 (365)
T 1lw7_A          335 NQVKAVIEK--VLNEEEISE  352 (365)
T ss_dssp             HHHHHHHHH--HTSCCCCSS
T ss_pred             HHHHHHHHH--HhcccchhH
Confidence            888887754  445555544

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.26  E-value=1.1e-14  Score=139.34  Aligned_cols=142  Identities=13%  Similarity=0.038  Sum_probs=87.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||+++|+|.  ++     .|.|.++|.+...   ....++|++|+..  +.+||.|++.+.+........ 
T Consensus        15 ~G~~GsGKSTl~~~La~~--~~-----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~~-   84 (191)
T 1zp6_A           15 SGHPGSGKSTIAEALANL--PG-----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEGY-   84 (191)
T ss_dssp             EECTTSCHHHHHHHHHTC--SS-----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTSC-
T ss_pred             ECCCCCCHHHHHHHHHhc--cC-----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhccCC-
Confidence            599999999999999997  33     6899999876422   1223677877654  456889988765432100000 


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                          ...++.++..+++.....  . +..+..+|+|++||+.++|++.++|+++        +|+.....+.+.++.+..
T Consensus        85 ----~~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~  149 (191)
T 1zp6_A           85 ----FVILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGA  149 (191)
T ss_dssp             ----EEEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGG
T ss_pred             ----eEEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCc
Confidence                000111111111111110  0 1234579999999999999999999886        688877777777766543


Q ss_pred             cCCeEEEEec
Q 007344          158 DGHTVICSIH  167 (607)
Q Consensus       158 ~g~tvi~~~H  167 (607)
                      .+..+|.+++
T Consensus       150 ~~~~~i~t~~  159 (191)
T 1zp6_A          150 FEHHVLPVSG  159 (191)
T ss_dssp             GGGGEEECTT
T ss_pred             ccccEEECCC
Confidence            3334444443

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.22  E-value=3.8e-12  Score=135.56  Aligned_cols=115  Identities=27%  Similarity=0.336  Sum_probs=83.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +||||||||||+++|+|.+++..    +|+|.+.|.+.... ...++||+|..                           
T Consensus       142 vG~~GsGKTTll~~l~~~~~~~~----~g~I~~~e~~~e~~~~~~~~~v~Q~~---------------------------  190 (372)
T 2ewv_A          142 TGPTGSGKSTTIASMIDYINQTK----SYHIITIEDPIEYVFKHKKSIVNQRE---------------------------  190 (372)
T ss_dssp             ECSSSSSHHHHHHHHHHHHHHHS----CCEEEEEESSCCSCCCCSSSEEEEEE---------------------------
T ss_pred             ECCCCCCHHHHHHHHHhhcCcCC----CcEEEEecccHhhhhccCceEEEeee---------------------------
Confidence            59999999999999999987531    58887766555321 23477888741                           


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                                  +|+.           ...+      +.+|+.+|..+|+++++|||+   |+.+...   .++. +..|
T Consensus       191 ------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~~g  234 (372)
T 2ewv_A          191 ------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AETG  234 (372)
T ss_dssp             ------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HTTT
T ss_pred             ------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-HhcC
Confidence                        2321           1123      469999999999999999999   7766443   3433 4568


Q ss_pred             CeEEEEecCChhHHHhhhcceeeec
Q 007344          160 HTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                      .+++.++|..+  +...+||++.|.
T Consensus       235 ~~vi~t~H~~~--~~~~~~rl~~l~  257 (372)
T 2ewv_A          235 HLVFGTLHTNT--AIDTIHRIVDIF  257 (372)
T ss_dssp             CEEEECCCCCS--HHHHHHHHHHTS
T ss_pred             CEEEEEECcch--HHHHHHHHHHhc
Confidence            99999999853  677889987764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.21  E-value=1.9e-12  Score=125.23  Aligned_cols=74  Identities=12%  Similarity=0.081  Sum_probs=56.9

Q ss_pred             HHHHHHHHcCCCccccccccCCcCCCCCHHHHHH-HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCe
Q 007344           84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR-LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHT  161 (607)
Q Consensus        84 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR-vsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~t  161 (607)
                      .+.+.++..++...   .+++ +...+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.|
T Consensus       128 ~~~~~~~~~~~~~~---~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          128 QMIEWAVDSNIAVL---VLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             HHHHHHHHTTCCEE---EEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHcCCCeE---EEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence            45556666666421   1222 466799999999 89999999999999999999999999999999999998766644

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.18  E-value=1.1e-13  Score=131.56  Aligned_cols=133  Identities=21%  Similarity=0.251  Sum_probs=82.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------c-ceEE----EEccCCCCCCCCCHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------A-YKFA----YVRQEDLFFSQLTVRETLSLA   67 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~-~~i~----yv~Q~~~l~~~lTV~E~l~~~   67 (607)
                      +|+||||||||+++|+|.+++.+  ...|.|.++|.++...        + +.+|    +++|+..++    +++     
T Consensus         8 vG~SGsGKSTL~~~L~~~~~~~g--~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-----   76 (171)
T 2f1r_A            8 VGTSDSGKTTLITRMMPILRERG--LRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-----   76 (171)
T ss_dssp             EESCHHHHHHHHHHHHHHHHHTT--CCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE-----
T ss_pred             ECCCCCCHHHHHHHHHHHhhhcC--CceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec-----
Confidence            59999999999999999987642  1269999999873221        1 2356    888877655    110     


Q ss_pred             HHccCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeE-------EEeCCCCC
Q 007344           68 AELQLPEILSVEERDEYVNSLLFK-LGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVI-------YADEPTTG  139 (607)
Q Consensus        68 ~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~il-------lLDEPtsG  139 (607)
                           .   .. +....++++++. +.   -.|+.+++    +||||||||++|||+++.+|++.       .-|.|..+
T Consensus        77 -----~---~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~  140 (171)
T 2f1r_A           77 -----V---SE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDG  140 (171)
T ss_dssp             -----C---CH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSS
T ss_pred             -----C---Ch-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCccc
Confidence                 0   01 111134555555 42   24687775    59999999999999999999873       23555322


Q ss_pred             ---CCHHHHHHHHHHHHHHHhcCC
Q 007344          140 ---LDAFQAEKVMEALRQLAQDGH  160 (607)
Q Consensus       140 ---LD~~~~~~i~~~L~~la~~g~  160 (607)
                         +|......+.+.+.+...+|.
T Consensus       141 ~~~f~~~~~~~~a~~i~~~~~~~~  164 (171)
T 2f1r_A          141 HKWFRRDEVERIAEFILSLLREGG  164 (171)
T ss_dssp             SCEECTTCHHHHHHHHHHHHTC--
T ss_pred             CcccCcccHHHHHHHHHHHHhccC
Confidence               344556777777766665553

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.18  E-value=1.5e-11  Score=128.90  Aligned_cols=150  Identities=11%  Similarity=0.052  Sum_probs=79.4

Q ss_pred             CCCCCCcHHHHHHHHHc-CcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAG-QLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG-~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      .||||+|||||+++|+| +..++     .|++.++|.+....   ...+++++|.+.+.-..+  +       .   ...
T Consensus        42 ~Gp~G~GKTtl~~~la~~l~~~~-----~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~~  104 (354)
T 1sxj_E           42 YGPNGTGKKTRCMALLESIFGPG-----VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------M---GNN  104 (354)
T ss_dssp             ECSTTSSHHHHHHTHHHHHSCTT-----CCC------------------CCEECSSEEEECCC----------------C
T ss_pred             ECCCCCCHHHHHHHHHHHHcCCC-----CCeEEecceeecccccccceeeeecccceEEecHh--h-------c---CCc
Confidence            49999999999999999 55554     68888888765422   234788888764321111  0       0   001


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      .....++.++++.+..++.    .     .. .+||           +..+|+++++|||++ ||+.+...+.+.+.+..
T Consensus       105 ~~~~~~~~i~~~~~~~~~~----~-----~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~  162 (354)
T 1sxj_E          105 DRIVIQELLKEVAQMEQVD----F-----QD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS  162 (354)
T ss_dssp             CHHHHHHHHHHHTTTTC---------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred             chHHHHHHHHHHHHhcccc----c-----cc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence            1111222233222222221    1     11 4566           788999999999999 99999999999998864


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                       .+.++|+++|++......+.+      ....+...++..
T Consensus       163 -~~~~~Il~t~~~~~l~~~l~s------R~~~~~~~~~~~  195 (354)
T 1sxj_E          163 -KNIRLIMVCDSMSPIIAPIKS------QCLLIRCPAPSD  195 (354)
T ss_dssp             -TTEEEEEEESCSCSSCHHHHT------TSEEEECCCCCH
T ss_pred             -CCCEEEEEeCCHHHHHHHHHh------hceEEecCCcCH
Confidence             367999999997643222223      334555555543

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.17  E-value=1.4e-11  Score=116.97  Aligned_cols=48  Identities=13%  Similarity=0.134  Sum_probs=43.3

Q ss_pred             hhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhH
Q 007344          125 IASPSVIYADEPTT-GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS  172 (607)
Q Consensus       125 ~~~p~illLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~  172 (607)
                      +.+|++|+||||++ ++|+.....+.+++.+..++|+++|+++|.+..+
T Consensus        98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~  146 (180)
T 3ec2_A           98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR  146 (180)
T ss_dssp             HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred             hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence            45999999999985 9999999999999999888899999999998654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.16  E-value=8.4e-12  Score=123.49  Aligned_cols=77  Identities=14%  Similarity=0.170  Sum_probs=48.1

Q ss_pred             CCHHHHHH-HHHHHHHh--hCCCeEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHh-cCCeEEEEecCChhH-
Q 007344          110 ISGGEKKR-LSLACELI--ASPSVIYADEPTTGLDAF-------Q-----AEKVMEALRQLAQ-DGHTVICSIHQPRGS-  172 (607)
Q Consensus       110 LSGGerqR-vsIa~aL~--~~p~illLDEPtsGLD~~-------~-----~~~i~~~L~~la~-~g~tvi~~~H~p~~~-  172 (607)
                      .++.+..+ +.-+.+++  .+|+++++|||++.+|+.       .     ..++++.|+++++ .|.|||+++|..... 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~  178 (243)
T 1n0w_A           99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD  178 (243)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred             CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence            45554432 33333444  489999999999999975       3     3456777777764 599999999964321 


Q ss_pred             -----------------HHhhhcceeeecCC
Q 007344          173 -----------------VYFKFDDIVLLTEG  186 (607)
Q Consensus       173 -----------------i~~~~D~v~lL~~G  186 (607)
                                       +...+|.+++|+.|
T Consensus       179 ~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          179 GAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             ------------------CCTTCEEEEEEEC
T ss_pred             CccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence                             22278999999765

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.14  E-value=1.6e-11  Score=113.86  Aligned_cols=47  Identities=6%  Similarity=0.110  Sum_probs=38.8

Q ss_pred             hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCe-EEEEecCChhH
Q 007344          125 IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHT-VICSIHQPRGS  172 (607)
Q Consensus       125 ~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~t-vi~~~H~p~~~  172 (607)
                      +.+|++|++|||++ +|...+..+.+++.++.++|++ +|+++|.+..+
T Consensus        81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~  128 (149)
T 2kjq_A           81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQ  128 (149)
T ss_dssp             GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTT
T ss_pred             HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHH
Confidence            46799999999998 5555588899999999888888 89999965443

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.09  E-value=8.5e-11  Score=124.62  Aligned_cols=119  Identities=19%  Similarity=0.201  Sum_probs=84.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---ccceEEEEc-cCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVR-QEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~-Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+|+|+|.++++     +|.|.++|...-.   ..+.++|++ |++.+                      
T Consensus       181 vG~sGsGKSTll~~l~~~~~~~-----~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~----------------------  233 (361)
T 2gza_A          181 AGETGSGKTTLMKALMQEIPFD-----QRLITIEDVPELFLPDHPNHVHLFYPSEAKE----------------------  233 (361)
T ss_dssp             EESSSSCHHHHHHHHHTTSCTT-----SCEEEEESSSCCCCTTCSSEEEEECC---------------------------
T ss_pred             ECCCCCCHHHHHHHHHhcCCCC-----ceEEEECCccccCccccCCEEEEeecCcccc----------------------
Confidence            5999999999999999999886     7999999853211   234588888 54321                      


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                                                      +++++...|..|+.++..+|+.+++||++.       .++.+.++.+.
T Consensus       234 --------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~  274 (361)
T 2gza_A          234 --------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAA  274 (361)
T ss_dssp             -------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHH
T ss_pred             --------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHh
Confidence                                            012222456667777777899999999986       34556676665


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  187 (607)
                      ....|++.++|..+  ....+||+..+..|.
T Consensus       275 ~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~  303 (361)
T 2gza_A          275 SGHGGSITSCHAGS--CELTFERLALMVLQN  303 (361)
T ss_dssp             TTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred             cCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence            44458899999854  667789999998764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.07  E-value=8.9e-12  Score=130.35  Aligned_cols=133  Identities=16%  Similarity=0.100  Sum_probs=90.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cc--eEEEEccCCCCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AY--KFAYVRQEDLFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~--~i~yv~Q~~~l~~~lTV~E~l~~~~~   69 (607)
                      +||||||||||+++|+|.+++.     +|+|.++|.+....         .+  .+.+++|+..+.|.+||+|++.++..
T Consensus       135 vG~nGaGKTTll~~Lag~l~~~-----~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~  209 (328)
T 3e70_C          135 VGFNGSGKTTTIAKLANWLKNH-----GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKA  209 (328)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHhc-----CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHh
Confidence            5999999999999999999876     79999999886432         11  26699999999999999999987643


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM  149 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~  149 (607)
                      ....          .  .+++..|+.+..     ......||       .|++++..++.+++||.+| |      .+++
T Consensus       210 ~~~d----------~--vliDtaG~~~~~-----~~l~~eL~-------~i~ral~~de~llvLDa~t-~------~~~~  258 (328)
T 3e70_C          210 RGID----------V--VLIDTAGRSETN-----RNLMDEMK-------KIARVTKPNLVIFVGDALA-G------NAIV  258 (328)
T ss_dssp             HTCS----------E--EEEEECCSCCTT-----TCHHHHHH-------HHHHHHCCSEEEEEEEGGG-T------THHH
T ss_pred             ccch----------h--hHHhhccchhHH-----HHHHHHHH-------HHHHHhcCCCCEEEEecHH-H------HHHH
Confidence            1100          0  012223332211     11122333       3888888777777888444 3      4566


Q ss_pred             HHHHHHH-hcCCeEEEEecCC
Q 007344          150 EALRQLA-QDGHTVICSIHQP  169 (607)
Q Consensus       150 ~~L~~la-~~g~tvi~~~H~p  169 (607)
                      +.++.+. ..+.|+|++||..
T Consensus       259 ~~~~~~~~~~~it~iilTKlD  279 (328)
T 3e70_C          259 EQARQFNEAVKIDGIILTKLD  279 (328)
T ss_dssp             HHHHHHHHHSCCCEEEEECGG
T ss_pred             HHHHHHHHhcCCCEEEEeCcC
Confidence            6677776 4588999999964

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.06  E-value=3.4e-12  Score=132.09  Aligned_cols=111  Identities=16%  Similarity=0.135  Sum_probs=73.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEE---CCeeCCCcc-----ceEEEEccCCCCC-----CCCCHHHHH--H
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEV---NGKPSSNKA-----YKFAYVRQEDLFF-----SQLTVRETL--S   65 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~---~G~~~~~~~-----~~i~yv~Q~~~l~-----~~lTV~E~l--~   65 (607)
                      +||||||||||+|+|+ ..++.     +|+|.+   +|++.+...     ..+|||+|++.+.     +.+|+ |++  .
T Consensus       171 ~G~sG~GKSTLln~l~-~~~~~-----~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~  243 (302)
T 2yv5_A          171 AGPSGVGKSSILSRLT-GEELR-----TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNY  243 (302)
T ss_dssp             ECSTTSSHHHHHHHHH-SCCCC-----CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGG
T ss_pred             ECCCCCCHHHHHHHHH-HhhCc-----ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHHH
Confidence            5999999999999999 88776     799999   887765431     2479999998553     67899 887  4


Q ss_pred             HH----HHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCcCCCCCHHHHHHHHHHHH
Q 007344           66 LA----AELQLPEILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACE  123 (607)
Q Consensus        66 ~~----~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIa~a  123 (607)
                      |.    ..++.....+..+...+++++++.++|.+ ..     +.+++.|||.++|++.||++
T Consensus       244 f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~-----~~~~~~ls~~~~R~~~~~~~  301 (302)
T 2yv5_A          244 FREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERY-----KSYLKIIKVYLEEIKELCRE  301 (302)
T ss_dssp             CGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHH-----HHHHHHTTCCCTTHHHHSSC
T ss_pred             HHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHH-----HHHHHHHHHHHHHHHHHhcc
Confidence            43    10111111112233456889999999964 33     33567899999999999874

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.04  E-value=4.8e-12  Score=130.23  Aligned_cols=121  Identities=19%  Similarity=0.206  Sum_probs=80.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHH----cc---CC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAE----LQ---LP   73 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~----~~---~~   73 (607)
                      .|+||||||||.+.|++.+.+.      |.          ..+.+.+|+||+.+++. ++++++.+...    +.   .|
T Consensus        37 ~G~sGsGKSTla~~L~~~l~~~------g~----------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p   99 (290)
T 1odf_A           37 SGPQGSGKSFTSIQIYNHLMEK------YG----------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLP   99 (290)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHH------HG----------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCST
T ss_pred             ECCCCCCHHHHHHHHHHHhhhc------CC----------CCceEEEeccccccCCh-HHHHHHhccccccchhhhccCc
Confidence            4999999999999999987542      20          12235666999988875 88899887631    11   13


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCC--cc-ccccccCCcCCCCCHHHHHHHHHH--HHHhhCCCeEEEeCCCCCCCHHH
Q 007344           74 EILSVEERDEYVNSLLFKLGLV--SC-ADSNVGDAKVRGISGGEKKRLSLA--CELIASPSVIYADEPTTGLDAFQ  144 (607)
Q Consensus        74 ~~~~~~~~~~~v~~~l~~lgL~--~~-~d~~vg~~~~~~LSGGerqRvsIa--~aL~~~p~illLDEPtsGLD~~~  144 (607)
                      .....    ....+.++.+.-.  .. .....-..+.+.+||||+||+.+|  +++  +|+|+|+||||+++|+..
T Consensus       100 ~a~d~----~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A          100 GTHDM----KLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             TSBCH----HHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred             chhHH----HHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence            22332    2345556665331  00 000101224468999999999987  555  999999999999999864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.03  E-value=1.5e-11  Score=132.35  Aligned_cols=157  Identities=17%  Similarity=0.156  Sum_probs=96.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC--H
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS--V   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~--~   78 (607)
                      +||||||||||+|+|+|..-       .|... ...........++|++|++.+++.+||.||+.++..........  .
T Consensus        48 vG~nGaGKSTLln~L~G~~l-------~g~~~-~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~  119 (427)
T 2qag_B           48 VGETGLGKSTLMDTLFNTKF-------EGEPA-THTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV  119 (427)
T ss_dssp             ECSTTSSSHHHHHHHHTSCC---------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred             ECCCCCCHHHHHHHHhCccc-------cCCcC-CCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence            59999999999999999741       23211 11011111245999999998888899999987643210000000  0


Q ss_pred             HHHHHHHHHHHHHc-CCCc----cccccc----c--CCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344           79 EERDEYVNSLLFKL-GLVS----CADSNV----G--DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        79 ~~~~~~v~~~l~~l-gL~~----~~d~~v----g--~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~  147 (607)
                      +..++..++.++.. ++..    ..|+.+    .  ....++++-.+   +.|+++|..+++++++|||+..|.+.....
T Consensus       120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~  196 (427)
T 2qag_B          120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTK  196 (427)
T ss_dssp             HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHH
Confidence            11234455566654 5431    122221    0  01124677666   789999999999999999999999999999


Q ss_pred             HHHHHHH-HHhcCCeEEEEecC
Q 007344          148 VMEALRQ-LAQDGHTVICSIHQ  168 (607)
Q Consensus       148 i~~~L~~-la~~g~tvi~~~H~  168 (607)
                      +.+.+++ +...|.+|+.++.+
T Consensus       197 l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          197 FKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHHHHBTTBCCCCCCC--
T ss_pred             HHHHHHHHHHHcCCcEEecCCC
Confidence            9999987 88889999888764

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.02  E-value=1.6e-12  Score=139.01  Aligned_cols=162  Identities=15%  Similarity=0.167  Sum_probs=112.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcC----CC---CCCccceEEEECCeeCCC------ccce---EEEEccCCCCCCCCCHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLM----AS---PRLHLSGLLEVNGKPSSN------KAYK---FAYVRQEDLFFSQLTVRETL   64 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~----~~---~~~~~~G~I~~~G~~~~~------~~~~---i~yv~Q~~~l~~~lTV~E~l   64 (607)
                      +|+||||||||+|+|+|...    ..   ..-...|.|.++|.....      ..+.   ..++.+.+-+....+..|.+
T Consensus        26 VG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L  105 (392)
T 1ni3_A           26 VGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGL  105 (392)
T ss_dssp             EECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSS
T ss_pred             ECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHH
Confidence            59999999999999999321    10   001237999998843211      1122   34777888888887776665


Q ss_pred             --HHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC--CeEEEeCCCCCC
Q 007344           65 --SLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP--SVIYADEPTTGL  140 (607)
Q Consensus        65 --~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p--~illLDEPtsGL  140 (607)
                        .|...++.            ++.++..++..       ++..+..+||+.            +|  +++++|||+.++
T Consensus       106 ~~~fl~~ir~------------~d~il~Vvd~~-------~d~~i~~v~~~~------------dP~~di~ildeel~~~  154 (392)
T 1ni3_A          106 GNAFLSHVRA------------VDAIYQVVRAF-------DDAEIIHVEGDV------------DPIRDLSIIVDELLIK  154 (392)
T ss_dssp             CHHHHHHHTT------------CSEEEEEEECC-------CTTCSSCCSSSS------------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH------------HHHHHHHHhcc-------ccceeeeecccc------------CcchhhhhchhhhHHH
Confidence              44443331            11122222221       123344466653            89  999999999999


Q ss_pred             CHHHHHHHHHHHHHH-HhcCCeEEEEecCChhHHHhhhccee-eecCC-eeeeeCCCCC
Q 007344          141 DAFQAEKVMEALRQL-AQDGHTVICSIHQPRGSVYFKFDDIV-LLTEG-KLVYAGPARD  196 (607)
Q Consensus       141 D~~~~~~i~~~L~~l-a~~g~tvi~~~H~p~~~i~~~~D~v~-lL~~G-~iv~~G~~~~  196 (607)
                      |+....+.++.++++ ++.|.|++  +|.. ..+..+||++. +|.+| ++++.|+.++
T Consensus       155 D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~  210 (392)
T 1ni3_A          155 DAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN  210 (392)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence            999999999999998 77788864  8984 57889999999 99999 9999887765

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.00  E-value=9.8e-12  Score=133.94  Aligned_cols=155  Identities=17%  Similarity=0.208  Sum_probs=89.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHH--HHccCCCCCCH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLA--AELQLPEILSV   78 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~--~~~~~~~~~~~   78 (607)
                      +|+|||||||||++|+|..+           .+.+.+.......+|+|.+++.  ..+++.|+.-+.  +..  ......
T Consensus       163 VG~~gAGKSTLL~~Lsg~~~-----------~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGli~~a~~--~~~L~~  227 (416)
T 1udx_A          163 VGYPNAGKSSLLAAMTRAHP-----------KIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGIIEGASE--GKGLGL  227 (416)
T ss_dssp             ECCGGGCHHHHHHHHCSSCC-----------EECCCTTCSSCCEEEEEECSSS--CEEEEEECCCCCCCGGG--SCCSCH
T ss_pred             ECCCCCcHHHHHHHHHcCCc-----------cccCcccceecceeeEEEecCc--ceEEEEeccccccchhh--hhhhhH
Confidence            69999999999999999742           2333333333334566655430  011111111000  000  001111


Q ss_pred             HHHH--HHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH-
Q 007344           79 EERD--EYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-  155 (607)
Q Consensus        79 ~~~~--~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l-  155 (607)
                      ...+  ++++.++..+++.        +..+..+|+|++||+.++++|+.+|.++++    +++|...+ ..++.+++. 
T Consensus       228 ~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l  294 (416)
T 1udx_A          228 EFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADAL  294 (416)
T ss_dssp             HHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHH
Confidence            1111  1122233333332        335567999999999999999999999999    99999877 555555554 


Q ss_pred             HhcCCeEEEEecCChhHHHhhhcceeee
Q 007344          156 AQDGHTVICSIHQPRGSVYFKFDDIVLL  183 (607)
Q Consensus       156 a~~g~tvi~~~H~p~~~i~~~~D~v~lL  183 (607)
                      .+.|.+++.+|..-...+.++++.+.-+
T Consensus       295 ~~~g~~vi~iSA~~g~gi~eL~~~i~~~  322 (416)
T 1udx_A          295 AREGLAVLPVSALTGAGLPALKEALHAL  322 (416)
T ss_dssp             HTTTSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HhcCCeEEEEECCCccCHHHHHHHHHHH
Confidence            4557777766654455677777766543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.91  E-value=1.9e-09  Score=115.60  Aligned_cols=72  Identities=21%  Similarity=0.220  Sum_probs=50.4

Q ss_pred             HHHHHHHHHh--hCCCeEEEeCCCCCCCHHHH------------HHHHHHHHHHHh-cCCeEEEEecCCh----------
Q 007344          116 KRLSLACELI--ASPSVIYADEPTTGLDAFQA------------EKVMEALRQLAQ-DGHTVICSIHQPR----------  170 (607)
Q Consensus       116 qRvsIa~aL~--~~p~illLDEPtsGLD~~~~------------~~i~~~L~~la~-~g~tvi~~~H~p~----------  170 (607)
                      +.+.-+.+++  .+|+++++||||+.+|+...            .++++.|+++++ .|.|||+++|...          
T Consensus       260 ~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g  339 (400)
T 3lda_A          260 RLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNP  339 (400)
T ss_dssp             HHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC------------
T ss_pred             HHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccC
Confidence            3343344443  46999999999999997543            678888999885 5999999999821          


Q ss_pred             --------hHHHhhhcceeeecCCe
Q 007344          171 --------GSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       171 --------~~i~~~~D~v~lL~~G~  187 (607)
                              ..+.+.+|.++.|++|+
T Consensus       340 ~~~~p~gg~~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          340 DPKKPIGGNIMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             --------CHHHHHCSEEEEEEECS
T ss_pred             CCccCCchhHHHHhcceEEEEEecC
Confidence                    23466789999997653

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.89  E-value=2.4e-10  Score=124.68  Aligned_cols=162  Identities=16%  Similarity=0.107  Sum_probs=98.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----------cceEEEEccCCCCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----------AYKFAYVRQEDLFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~   69 (607)
                      +|+||||||||+++|+|++++.     +|+|.++|.+....           +++++|++|+..+++.+||++++.++..
T Consensus       299 VGpNGSGKTTLl~~LAgll~~~-----~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~  373 (503)
T 2yhs_A          299 VGVNGVGKTTTIGKLARQFEQQ-----GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA  373 (503)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHT-----TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHH
T ss_pred             ECCCcccHHHHHHHHHHHhhhc-----CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHh
Confidence            6999999999999999998875     79999987654321           2348999999888888999999988754


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHh-hCC-CeEEEeCCCCCCCHHHHHH
Q 007344           70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI-ASP-SVIYADEPTTGLDAFQAEK  147 (607)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~-~~p-~illLDEPtsGLD~~~~~~  147 (607)
                      -.    ..      .  -+++..|+.+..         ..+-.--+|++.+++++. ..| .++|..++|+|.|..    
T Consensus       374 ~~----~D------v--VLIDTaGrl~~~---------~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al----  428 (503)
T 2yhs_A          374 RN----ID------V--LIADTAGRLQNK---------SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV----  428 (503)
T ss_dssp             TT----CS------E--EEECCCCSCCCH---------HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH----
T ss_pred             cC----CC------E--EEEeCCCccchh---------hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH----
Confidence            21    00      0  011222221110         011112247788888664 456 456555588886543    


Q ss_pred             HHHHHHHHH-hcCCeEEEEecCChhHHHhhhcceeeec--CCeeeeeCCCCC
Q 007344          148 VMEALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLT--EGKLVYAGPARD  196 (607)
Q Consensus       148 i~~~L~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~--~G~iv~~G~~~~  196 (607)
                        +.++.+. .-|.|.+++||-.  ......+.+-++.  +..+.|.|.-..
T Consensus       429 --~~ak~f~~~~~itgvIlTKLD--~takgG~~lsi~~~~~~PI~fig~Ge~  476 (503)
T 2yhs_A          429 --SQAKLFHEAVGLTGITLTKLD--GTAKGGVIFSVADQFGIPIRYIGVGER  476 (503)
T ss_dssp             --HHHHHHHHHTCCSEEEEECGG--GCSCCTHHHHHHHHHCCCEEEEECSSS
T ss_pred             --HHHHHHHhhcCCCEEEEEcCC--CcccccHHHHHHHHHCCCEEEEecCCC
Confidence              3344454 3478999999942  2222223233332  345666665444

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.86  E-value=1.6e-11  Score=129.04  Aligned_cols=141  Identities=20%  Similarity=0.260  Sum_probs=88.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---------ccceEEEEccCCCCCCCC------------C
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQL------------T   59 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~~l~~~l------------T   59 (607)
                      +||||||||||+|+|+|.+.+.     +|+|.+.|.+...         .+.+++|++|++.++...            +
T Consensus        61 ~G~~GaGKSTLl~~l~g~~~~~-----~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~  135 (337)
T 2qm8_A           61 TGVPGVGKSTTIDALGSLLTAA-----GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAK  135 (337)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHHT-----TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhhhhC-----CCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHHH
Confidence            5999999999999999998776     7999998876532         134589999998776532            1


Q ss_pred             HHHHHHHHHH-----------------------------ccCCCCCCHHHHH---HHHHHHHHHcCCCccccccccCCcC
Q 007344           60 VRETLSLAAE-----------------------------LQLPEILSVEERD---EYVNSLLFKLGLVSCADSNVGDAKV  107 (607)
Q Consensus        60 V~E~l~~~~~-----------------------------~~~~~~~~~~~~~---~~v~~~l~~lgL~~~~d~~vg~~~~  107 (607)
                      ++|.+...-.                             +..+.  ..++.+   +.+.+....+.+ +..|.    ...
T Consensus       136 ~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~~~i~~~i~~~~~ivvl-NK~Dl----~~~  208 (337)
T 2qm8_A          136 TRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDELQGIKKGIFELADMIAV-NKADD----GDG  208 (337)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------CCTTHHHHCSEEEE-ECCST----TCC
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccHHHHHHHHhccccEEEE-Echhc----cCc
Confidence            3333311100                             00000  001100   011111111222 11110    112


Q ss_pred             CCCCHHHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344          108 RGISGGEKKRLSLACELIA------SPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus       108 ~~LSGGerqRvsIa~aL~~------~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      +.+|+|++|++..+++++.      +|++++    ||++|.....++.+.|.++..
T Consensus       209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence            4579999999999999887      688887    999999999999999988653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.85  E-value=7.4e-12  Score=135.06  Aligned_cols=118  Identities=20%  Similarity=0.177  Sum_probs=78.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEE---------ccCCCC--CCC---
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYV---------RQEDLF--FSQ---   57 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv---------~Q~~~l--~~~---   57 (607)
                      +|||||||||||++|+|.+++.     +|+|.+.|.++...         ..++++.         .|++..  +..   
T Consensus       173 ~GpnGSGKTTlL~allg~l~~~-----~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd  247 (418)
T 1p9r_A          173 TGPTGSGKSTTLYAGLQELNSS-----ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRD  247 (418)
T ss_dssp             ECSTTSCHHHHHHHHHHHHCCT-----TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS
T ss_pred             ECCCCCCHHHHHHHHHhhcCCC-----CCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCC
Confidence            5999999999999999998876     79999988776321         1234454         488654  344   


Q ss_pred             -CCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 007344           58 -LTVRETLSLAAELQLP-EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYA  133 (607)
Q Consensus        58 -lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illL  133 (607)
                       .|+.+++.++..-++. .........+.+ +.|..+|+.+..       ....|||||+||  ||++|+.+|++..-
T Consensus       248 ~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~~  315 (418)
T 1p9r_A          248 LETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPYE  315 (418)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred             HHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence             6899988876421100 000001111223 346778885431       356799999999  99999999998763

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.84  E-value=1.1e-11  Score=120.95  Aligned_cols=140  Identities=21%  Similarity=0.143  Sum_probs=75.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+++|+|++++.      |             ..+|+|++++..+.. +..+++........+.......
T Consensus        28 ~G~sGsGKSTl~~~l~~~~~~~------g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   87 (208)
T 3c8u_A           28 SGAPGSGKSTLSNPLAAALSAQ------G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAPETFDFEG   87 (208)
T ss_dssp             ECCTTSCTHHHHHHHHHHHHHT------T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSGGGBCHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHhhc------C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCCchhhHHH
Confidence            5999999999999999998642      2             135666666554432 2222211000001111122222


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHH-HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA-CELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG  159 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa-~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g  159 (607)
                      .    .+.+..+...+..+....+ ...++|+||+||++++ +.++.++.++++|||..              .++.+.-
T Consensus        88 ~----~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~~l~~~~  148 (208)
T 3c8u_A           88 F----QRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------------RDLTAIW  148 (208)
T ss_dssp             H----HHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------GGGGGTC
T ss_pred             H----HHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------HHHHHhc
Confidence            2    2233332211111223333 2345799999999987 77788888877888741              1112222


Q ss_pred             CeEEEEecCChhHHHhhhcc
Q 007344          160 HTVICSIHQPRGSVYFKFDD  179 (607)
Q Consensus       160 ~tvi~~~H~p~~~i~~~~D~  179 (607)
                      -.++.+.+.....+.+...|
T Consensus       149 d~~i~vd~~~~~~~~R~~~R  168 (208)
T 3c8u_A          149 DVSIRLEVPMADLEARLVQR  168 (208)
T ss_dssp             SEEEEECCCHHHHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHH
Confidence            36677767654445566665

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.83  E-value=2e-11  Score=135.07  Aligned_cols=158  Identities=15%  Similarity=0.176  Sum_probs=89.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCee-CCC-ccceEEEEccCCC----------------------CCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSN-KAYKFAYVRQEDL----------------------FFS   56 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~-~~~-~~~~i~yv~Q~~~----------------------l~~   56 (607)
                      +|||||||||||++|+|.++++     +|.|.++|.+ ... ....++++.|...                      ++.
T Consensus       266 ~GptGSGKTTlL~aL~~~i~~~-----~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg  340 (511)
T 2oap_1          266 VGETASGKTTTLNAIMMFIPPD-----AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG  340 (511)
T ss_dssp             EESTTSSHHHHHHHHGGGSCTT-----CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred             ECCCCCCHHHHHHHHHhhCCCC-----CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence            5999999999999999999876     7999998865 221 1234666665433                      223


Q ss_pred             CCCHHHHHHHHHHccCCCC-CCHHHHHHHHHHHHHHcCCCc--cccccc--cC---CcCCCCCHHHHHHHHHHHHHhhCC
Q 007344           57 QLTVRETLSLAAELQLPEI-LSVEERDEYVNSLLFKLGLVS--CADSNV--GD---AKVRGISGGEKKRLSLACELIASP  128 (607)
Q Consensus        57 ~lTV~E~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~--~~d~~v--g~---~~~~~LSGGerqRvsIa~aL~~~p  128 (607)
                      .++..|++.+......... .+. -....+.++++++....  .....+  -+   .....+|||||||+.++.      
T Consensus       341 Eir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R~~~ai------  413 (511)
T 2oap_1          341 EVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLRRTKEV------  413 (511)
T ss_dssp             CCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEEEEEEE------
T ss_pred             CcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceEEEEEE------
Confidence            4455554433222211100 000 00001223333333211  000000  01   123467999999877652      


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEE--EecCChhHHHhhh
Q 007344          129 SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVIC--SIHQPRGSVYFKF  177 (607)
Q Consensus       129 ~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~--~~H~p~~~i~~~~  177 (607)
                          + | |+|||+.....+++.+.++.++|+|+++  ++|+.. ++...+
T Consensus       414 ----~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~  457 (511)
T 2oap_1          414 ----N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL  457 (511)
T ss_dssp             ----E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred             ----E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence                1 7 9999998877777777777667888875  788753 444443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.78  E-value=3.3e-10  Score=106.07  Aligned_cols=59  Identities=19%  Similarity=0.150  Sum_probs=47.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSL   66 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~   66 (607)
                      +||||||||||+|+|+|.+ +.     +|+|.++|.++.+......+++|+..++ .+||.|++.+
T Consensus        39 ~G~nGaGKTTLlr~l~g~l-~~-----~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e~l~~   97 (158)
T 1htw_A           39 NGDLGAGKTTLTRGMLQGI-GH-----QGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPEELEF   97 (158)
T ss_dssp             ECSTTSSHHHHHHHHHHHT-TC-----CSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTTHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhC-CC-----CCeEEECCEeeeeeccCCCcceeccccc-cCCcHHHHHH
Confidence            5999999999999999998 65     7999999977642211112799998888 8999999865

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.75  E-value=1.6e-10  Score=121.06  Aligned_cols=148  Identities=19%  Similarity=0.200  Sum_probs=87.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-----ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-----KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      .||||+|||||+++|+|.+... -...+|.+..++.++..     ....++|+.|.+.+.+  ++.|++...........
T Consensus        57 ~Gp~G~GKTTLa~~ia~~l~~~-~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i  133 (334)
T 1in4_A           57 AGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDI  133 (334)
T ss_dssp             ESSTTSSHHHHHHHHHHHHTCC-EEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC
T ss_pred             ECCCCCcHHHHHHHHHHHhCCC-EEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccce
Confidence            4999999999999999987321 00125555555543321     1346999999887765  78888865443221000


Q ss_pred             -CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344           76 -LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus        76 -~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~  154 (607)
                       .......+.++..++.++|.. +++     .+..||+|+|||+.++                .+||+.+..++.++|++
T Consensus       134 ~~~~~~~~~~i~~~l~~~~li~-at~-----~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~  191 (334)
T 1in4_A          134 MIGKGPSAKSIRIDIQPFTLVG-ATT-----RSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKR  191 (334)
T ss_dssp             ---------------CCCEEEE-EES-----CGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHH
T ss_pred             eeccCcccccccccCCCeEEEE-ecC-----CcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHH
Confidence             011222334555555566633 322     3567999999998655                78899999999999999


Q ss_pred             HHhc-CCeEEEEecCChhHHHhhhcc
Q 007344          155 LAQD-GHTVICSIHQPRGSVYFKFDD  179 (607)
Q Consensus       155 la~~-g~tvi~~~H~p~~~i~~~~D~  179 (607)
                      .++. |     +.|++ ..+..++++
T Consensus       192 ~~~~~~-----~~~~~-~~~~~ia~~  211 (334)
T 1in4_A          192 AASLMD-----VEIED-AAAEMIAKR  211 (334)
T ss_dssp             HHHHTT-----CCBCH-HHHHHHHHT
T ss_pred             HHHHcC-----CCcCH-HHHHHHHHh
Confidence            8743 3     24653 344444443

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.72  E-value=6.8e-10  Score=114.67  Aligned_cols=83  Identities=20%  Similarity=0.225  Sum_probs=55.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEE---CCeeCCCcc-----ceEEEEccCCC----------------CCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEV---NGKPSSNKA-----YKFAYVRQEDL----------------FFS   56 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~---~G~~~~~~~-----~~i~yv~Q~~~----------------l~~   56 (607)
                      +||||||||||||+|+|+.++.     +|+|.+   +|++.....     +.+|||+|.+.                +++
T Consensus       175 ~G~sG~GKSTll~~l~g~~~~~-----~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~  249 (301)
T 1u0l_A          175 AGLSGVGKSSLLNAINPGLKLR-----VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFK  249 (301)
T ss_dssp             ECSTTSSHHHHHHHHSTTCCCC------------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGST
T ss_pred             ECCCCCcHHHHHHHhccccccc-----ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHHH
Confidence            6999999999999999999887     799999   887765421     24899999874                588


Q ss_pred             CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC
Q 007344           57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLV   95 (607)
Q Consensus        57 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~   95 (607)
                      .+|+ ||+.|.. +..     ..+...++.++++.+||.
T Consensus       250 ~~~~-~n~~~~~-~~~-----~~e~~~~v~~~l~~~~L~  281 (301)
T 1u0l_A          250 EFGD-KQCFFSD-CNH-----VDEPECGVKEAVENGEIA  281 (301)
T ss_dssp             TSSS-CCCSSTT-CCS-----SSCSSCHHHHHHHHTSSC
T ss_pred             hccc-ccCcCCC-CcC-----CCCCCcHHHHHHHcCCCC
Confidence            9999 9888752 211     122345688999999994

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.66  E-value=1.2e-09  Score=112.92  Aligned_cols=105  Identities=20%  Similarity=0.190  Sum_probs=56.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEE---CCeeCCCcc---ce-EEEEccCCCCCC----CCCHHHHHH--HH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEV---NGKPSSNKA---YK-FAYVRQEDLFFS----QLTVRETLS--LA   67 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~---~G~~~~~~~---~~-i~yv~Q~~~l~~----~lTV~E~l~--~~   67 (607)
                      +||||+|||||+|+|+|..++.     +|+|.+   +|+..+...   +. .||++|.+.+..    .+|+ |++.  |.
T Consensus       179 vG~sG~GKSTLln~L~g~~~~~-----~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~  252 (307)
T 1t9h_A          179 AGQSGVGKSSLLNAISPELGLR-----TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTFP  252 (307)
T ss_dssp             EESHHHHHHHHHHHHCC------------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGSH
T ss_pred             ECCCCCCHHHHHHHhccccccc-----ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHHHHHH
Confidence            5999999999999999998776     799988   777654322   12 699999987655    6899 8883  32


Q ss_pred             H------HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHH
Q 007344           68 A------ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK  116 (607)
Q Consensus        68 ~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq  116 (607)
                      .      .++........+....++++++.++|.+.+..     ....++.|++|
T Consensus       253 ~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~-----~y~~lls~~~~  302 (307)
T 1t9h_A          253 DIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYD-----HYVEFMTEIKD  302 (307)
T ss_dssp             HHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-----HHHHHHHHHHT
T ss_pred             HHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHH-----HHHHHHHHHhh
Confidence            1      12211111112234568899999999653322     23356667665

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.63  E-value=2.2e-12  Score=125.14  Aligned_cols=56  Identities=16%  Similarity=0.167  Sum_probs=41.9

Q ss_pred             HHH-HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeec
Q 007344          120 LAC-ELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       120 Ia~-aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~  184 (607)
                      +++ +++.+|++++|||+|+++|..+...|.+.|.+..++    +...|.+     ..+|++++++
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd  172 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND  172 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence            344 677788888889999999999999999998887653    2334522     4589887775

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.56  E-value=2.6e-08  Score=103.08  Aligned_cols=100  Identities=20%  Similarity=0.263  Sum_probs=68.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +|||||||||+++.|++.+.+.     .|+|.+.+.+....    +             ..|                  
T Consensus       110 vG~~GsGKTTl~~~LA~~l~~~-----g~kV~lv~~D~~r~----~-------------a~e------------------  149 (306)
T 1vma_A          110 VGVNGTGKTTSCGKLAKMFVDE-----GKSVVLAAADTFRA----A-------------AIE------------------  149 (306)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEEECTTCH----H-------------HHH------------------
T ss_pred             EcCCCChHHHHHHHHHHHHHhc-----CCEEEEEccccccH----H-------------HHH------------------
Confidence            5999999999999999998764     56777665442110    0             011                  


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHH---HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL---SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv---sIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                         .+..+.+.+|+.     .     +...|||+.+++   +|++++..+|+++++|||..   ......+++.|+++.
T Consensus       150 ---qL~~~~~~~gl~-----~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~  212 (306)
T 1vma_A          150 ---QLKIWGERVGAT-----V-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH  212 (306)
T ss_dssp             ---HHHHHHHHHTCE-----E-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHcCCc-----E-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence               123344556662     1     235689999999   89999999999999999974   344555666666554

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.55  E-value=9.7e-08  Score=98.31  Aligned_cols=133  Identities=17%  Similarity=0.201  Sum_probs=82.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +|||||||||+++.|++.+.+.     +|             +++.++.+|..   ..+..|.+...+.           
T Consensus       111 vG~~GsGKTTl~~~LA~~l~~~-----~G-------------~~V~lv~~D~~---r~~a~eqL~~~~~-----------  158 (296)
T 2px0_A          111 FGSTGAGKTTTLAKLAAISMLE-----KH-------------KKIAFITTDTY---RIAAVEQLKTYAE-----------  158 (296)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHT-----TC-------------CCEEEEECCCS---STTHHHHHHHHHT-----------
T ss_pred             ECCCCCCHHHHHHHHHHHHHHh-----cC-------------CEEEEEecCcc---cchHHHHHHHHHH-----------
Confidence            5999999999999999987643     34             24667776652   2355565544321           


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH---h
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA---Q  157 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la---~  157 (607)
                                ..|+...          ...+. +.-+.+|+  .+.+|+++|+|  |+|+|+.....+.++.+-+.   .
T Consensus       159 ----------~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~  213 (296)
T 2px0_A          159 ----------LLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESS  213 (296)
T ss_dssp             ----------TTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTT
T ss_pred             ----------hcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCC
Confidence                      1233110          01122 23344555  45999999999  99999876655544443332   2


Q ss_pred             cCCeEEE-EecCChhHHHhhhcceeeecCCeeeee
Q 007344          158 DGHTVIC-SIHQPRGSVYFKFDDIVLLTEGKLVYA  191 (607)
Q Consensus       158 ~g~tvi~-~~H~p~~~i~~~~D~v~lL~~G~iv~~  191 (607)
                      .+.++++ ++|.. .++...+|++..+..+.++..
T Consensus       214 ~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt  247 (296)
T 2px0_A          214 IQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT  247 (296)
T ss_dssp             EEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred             CeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence            2334444 47774 467777888877777777764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.52  E-value=7.8e-11  Score=120.16  Aligned_cols=108  Identities=20%  Similarity=0.216  Sum_probs=70.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCC-CCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQED-LFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+|+|+|...       .|.|.++|.++...     .+.+++++|+. ...+.+++.|++...+..+   
T Consensus        50 ~Gp~GtGKTtLakala~~~~-------~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r---  119 (274)
T 2x8a_A           50 AGPPGCGKTLLAKAVANESG-------LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR---  119 (274)
T ss_dssp             ESSTTSCHHHHHHHHHHHTT-------CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----
T ss_pred             ECCCCCcHHHHHHHHHHHcC-------CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhccc---
Confidence            49999999999999999764       26889998776432     13467777764 4455566666654422111   


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 007344           75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPT  137 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPt  137 (607)
                        ...+    ..      .+.     .+.+.....|||||+||+.|++++..+|++|  ||++
T Consensus       120 --~~~~----~~------~~~-----~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al  163 (274)
T 2x8a_A          120 --SDRE----TG------ASV-----RVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAI  163 (274)
T ss_dssp             -------------------CT-----THHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred             --CCCc----ch------HHH-----HHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence              0000    00      011     1112345579999999999999999999985  7765

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.45  E-value=4.5e-09  Score=115.67  Aligned_cols=151  Identities=21%  Similarity=0.149  Sum_probs=84.1

Q ss_pred             CCCCCCcHHHHHHHHHc--CcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCC--CHHHHHHHHHH-ccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAG--QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQL--TVRETLSLAAE-LQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG--~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~l--TV~E~l~~~~~-~~~~~~   75 (607)
                      .|++||||||+|++|..  +...+     .|++.+.+.+.+...      .+....+|++  +|.++...+.. ++    
T Consensus       173 aG~TGSGKSt~L~~li~sLl~~~~-----p~~v~l~liDpK~~e------l~~~~~lPhl~~~Vvtd~~~a~~~L~----  237 (512)
T 2ius_A          173 AGTTGSGASVGVNAMILSMLYKAQ-----PEDVRFIMIDPKMLE------LSVYEGIPHLLTEVVTDMKDAANALR----  237 (512)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHTTCC-----TTTEEEEEECCSSSG------GGGGTTCTTBSSSCBCSHHHHHHHHH----
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhCC-----CceEEEEEECCchhh------hhhhccCCcccceeecCHHHHHHHHH----
Confidence            49999999999999875  22322     355555444433210      0000011111  12122222111 11    


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHH----------HHHHHHhhCCC-eEEEeCCCCCCCHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL----------SLACELIASPS-VIYADEPTTGLDAFQ  144 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv----------sIa~aL~~~p~-illLDEPtsGLD~~~  144 (607)
                      ...++.++|. ++++..|+.+..+-.  ......+||||+||.          .+++++...|. ++++||++.-+|.. 
T Consensus       238 ~~~~EmerR~-~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-  313 (512)
T 2ius_A          238 WCVNEMERRY-KLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-  313 (512)
T ss_dssp             HHHHHHHHHH-HHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-
T ss_pred             HHHHHHHHHH-HHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-
Confidence            1124455553 678888886543210  001124788887752          34555667887 78999999988843 


Q ss_pred             HHHHHHHHHHHHhc----CCeEEEEecCCh
Q 007344          145 AEKVMEALRQLAQD----GHTVICSIHQPR  170 (607)
Q Consensus       145 ~~~i~~~L~~la~~----g~tvi~~~H~p~  170 (607)
                      ..++.+.+.++++.    |.++|+++|.|+
T Consensus       314 ~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          314 GKKVEELIARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred             hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence            34566666666543    679999999997

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.44  E-value=1.4e-07  Score=99.39  Aligned_cols=78  Identities=22%  Similarity=0.228  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhhC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhcCCeEEEEecCChh-----
Q 007344          116 KRLSLACELIAS--PSVIYADEPTTGL----------DA---FQAEKVMEALRQL----AQDGHTVICSIHQPRG-----  171 (607)
Q Consensus       116 qRvsIa~aL~~~--p~illLDEPtsGL----------D~---~~~~~i~~~L~~l----a~~g~tvi~~~H~p~~-----  171 (607)
                      +-+.++++++.+  |+++++||+++.+          |+   ..++.+.+.+++|    .+.|.|||++.|....     
T Consensus       126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~  205 (349)
T 2zr9_A          126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF  205 (349)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence            345678888765  9999999999998          33   2233445555555    3568999999996431     


Q ss_pred             ----------HHHhhhcceeeecCCeeeeeCC
Q 007344          172 ----------SVYFKFDDIVLLTEGKLVYAGP  193 (607)
Q Consensus       172 ----------~i~~~~D~v~lL~~G~iv~~G~  193 (607)
                                .+...+|.++.++.++++..|+
T Consensus       206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~  237 (349)
T 2zr9_A          206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT  237 (349)
T ss_dssp             ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred             CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence                      2567789999998887766654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.44  E-value=8e-07  Score=87.49  Aligned_cols=60  Identities=22%  Similarity=0.211  Sum_probs=45.5

Q ss_pred             hCCCeEEEeCCCCCC--CHHHHHHHHHHHHHHH-hcCCeEEEEecCChhH-------HHhhhcceeeecC
Q 007344          126 ASPSVIYADEPTTGL--DAFQAEKVMEALRQLA-QDGHTVICSIHQPRGS-------VYFKFDDIVLLTE  185 (607)
Q Consensus       126 ~~p~illLDEPtsGL--D~~~~~~i~~~L~~la-~~g~tvi~~~H~p~~~-------i~~~~D~v~lL~~  185 (607)
                      .+|+++++|+|++.+  |+....+++..|.+++ +.|.|||+++|.....       +.+.+|.++.|+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            579999999999988  6655666667777665 6789999999986531       4567899999963

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.43  E-value=1.9e-08  Score=96.15  Aligned_cols=38  Identities=13%  Similarity=0.175  Sum_probs=34.0

Q ss_pred             HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344          116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL  155 (607)
Q Consensus       116 qRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l  155 (607)
                      +++.+|++++.+|+++++|  ||++|.....++++.|.+.
T Consensus       152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~  189 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE  189 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence            4578899999999999999  9999999999999988653

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.38  E-value=5e-07  Score=92.92  Aligned_cols=106  Identities=21%  Similarity=0.114  Sum_probs=71.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +|+||+||||++..|+|.+.+.     .|+|.+.+.+.....                ++ +.+                
T Consensus       104 ~g~~G~GKTT~~~~la~~~~~~-----~~~v~l~~~d~~~~~----------------~~-~ql----------------  145 (295)
T 1ls1_A          104 VGLQGSGKTTTAAKLALYYKGK-----GRRPLLVAADTQRPA----------------AR-EQL----------------  145 (295)
T ss_dssp             ECCTTTTHHHHHHHHHHHHHHT-----TCCEEEEECCSSCHH----------------HH-HHH----------------
T ss_pred             ECCCCCCHHHHHHHHHHHHHHc-----CCeEEEecCCcccHh----------------HH-HHH----------------
Confidence            4999999999999999998754     577777765432110                00 100                


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEP-TTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEP-tsGLD~~~~~~i~~~L~~la  156 (607)
                           ..+.+..|+.....   +    .+-+-.+.+|.+|+.+...+++++++||| ++|+|.....++.+..+.+.
T Consensus       146 -----~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~  210 (295)
T 1ls1_A          146 -----RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG  210 (295)
T ss_dssp             -----HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred             -----HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence                 01223345532110   0    12244566788999988899999999999 99999988888887776653

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.36  E-value=8.1e-07  Score=96.80  Aligned_cols=98  Identities=15%  Similarity=0.122  Sum_probs=67.7

Q ss_pred             HHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCH--------HHHHHHHHHHH
Q 007344           84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI--ASPSVIYADEPTTGLDA--------FQAEKVMEALR  153 (607)
Q Consensus        84 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~--~~p~illLDEPtsGLD~--------~~~~~i~~~L~  153 (607)
                      ++.+.++.++..+..   +-  ...++|.+|.+  +.++.++  .+|+++++|+++...++        ....++.+.|+
T Consensus       275 ~~~~a~~~l~~~~l~---i~--d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk  347 (454)
T 2r6a_A          275 KLTMAMGSLSNAGIY---ID--DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLK  347 (454)
T ss_dssp             HHHHHHHHHHSSCEE---EE--CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCEE---EE--CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHH
Confidence            455555555432221   11  13478999987  5667776  68999999999987742        34467888888


Q ss_pred             HHHh-cCCeEEEEec---------C--Ch-------hHHHhhhcceeeecCCee
Q 007344          154 QLAQ-DGHTVICSIH---------Q--PR-------GSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       154 ~la~-~g~tvi~~~H---------~--p~-------~~i~~~~D~v~lL~~G~i  188 (607)
                      .+++ .|.+||+++|         +  |.       ..+...+|.|++|..++.
T Consensus       348 ~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          348 ALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             HHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             HHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence            8884 5899999999         2  32       146778999999976643

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.35  E-value=1.9e-08  Score=113.71  Aligned_cols=137  Identities=18%  Similarity=0.142  Sum_probs=83.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||+|||||+++|++..++.    ..|.+.+++.+.......++++++...-    .+.|.....+.....  . ...
T Consensus        66 ~Gp~GtGKTtlar~ia~~l~~~----~~~~~~~~~~~~~~~~p~i~~~p~g~~~----~~~e~~~~~~~~~~~--~-r~~  134 (604)
T 3k1j_A           66 IGEPGTGKSMLGQAMAELLPTE----TLEDILVFPNPEDENMPRIKTVPACQGR----RIVEKYREKAKSQES--V-KSS  134 (604)
T ss_dssp             ECCTTSSHHHHHHHHHHTSCCS----SCEEEEEECCTTCTTSCEEEEEETTHHH----HHHHHHHHHHHHHTC--C----
T ss_pred             EeCCCCCHHHHHHHHhccCCcc----cCCeEEEeCCcccccCCcEEEEecchHH----HHHHHHHHhhccchh--h-hhh
Confidence            4999999999999999998765    2488899888776666678999875310    111111111111000  0 000


Q ss_pred             HHHH-------------------------HHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 007344           81 RDEY-------------------------VNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADE  135 (607)
Q Consensus        81 ~~~~-------------------------v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDE  135 (607)
                      ....                         ....-+.+|..+..     ....+++|+|++|++..+.....++.+||+||
T Consensus       135 ~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~-----~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDE  209 (604)
T 3k1j_A          135 NMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD-----PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDE  209 (604)
T ss_dssp             --------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC-----CC----CCCCGGGGEECCHHHHTTTSEEEETT
T ss_pred             cccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec-----hhhcCCccccccccccCceeeecCCCEEEEec
Confidence            0000                         00001112211100     11235799999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 007344          136 PTTGLDAFQAEKVMEALRQ  154 (607)
Q Consensus       136 PtsGLD~~~~~~i~~~L~~  154 (607)
                      ... |++.....+.+.|.+
T Consensus       210 i~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          210 IAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             GGG-SCHHHHHHHHHHHHH
T ss_pred             hhh-CCHHHHHHHHHHHHc
Confidence            988 899888888877764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.19  E-value=1.4e-09  Score=110.71  Aligned_cols=105  Identities=19%  Similarity=0.247  Sum_probs=67.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||+|||||+++|++...       .|.|.++|.++...     ..++++++|+.. ..+.+++.|++......+...
T Consensus        79 ~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~  151 (278)
T 1iy2_A           79 VGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG  151 (278)
T ss_dssp             ECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC----
T ss_pred             ECCCcChHHHHHHHHHHHcC-------CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc
Confidence            59999999999999999763       57888888654221     234677777643 556677888875433221100


Q ss_pred             -CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCe
Q 007344           75 -ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSV  130 (607)
Q Consensus        75 -~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~i  130 (607)
                       ....++..+.+.+++                  ..|||||+||+.|++++..+|++
T Consensus       152 ~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~  190 (278)
T 1iy2_A          152 VGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI  190 (278)
T ss_dssp             ----CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred             cCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence             001122233333332                  24899999999999999999876

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.18  E-value=8.4e-07  Score=93.94  Aligned_cols=147  Identities=24%  Similarity=0.190  Sum_probs=84.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCC------CCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHH---HHHHHHHHc-
Q 007344            1 MGPSGSGKTTLLNVLAGQLMAS------PRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR---ETLSLAAEL-   70 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~------~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~---E~l~~~~~~-   70 (607)
                      +|+||||||||+|.|+|.....      .....+|.|.++|.++.- ....|++.|.+.    ..|.   .++...... 
T Consensus       185 vG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp~----~lve~f~~tl~~~~~aD  259 (364)
T 2qtf_A          185 VGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIPP----QIVDAFFVTLSEAKYSD  259 (364)
T ss_dssp             ECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCCG----GGHHHHHHHHHGGGGSS
T ss_pred             ECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCCH----HHHHHHHHHHHHHHhCC
Confidence            5999999999999999986421      001246889998865411 112455544321    1121   111111000 


Q ss_pred             ---cC-CCCCCH---HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHH----HHH-hhCCCeEEEeCCCC
Q 007344           71 ---QL-PEILSV---EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA----CEL-IASPSVIYADEPTT  138 (607)
Q Consensus        71 ---~~-~~~~~~---~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa----~aL-~~~p~illLDEPts  138 (607)
                         .. ......   .+..+.+.++++.+++.+..--.++| ++.-+|+|+++|+.++    +++ ..+|++    +|+|
T Consensus       260 ~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~S  334 (364)
T 2qtf_A          260 ALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPIS  334 (364)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECB
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEE
Confidence               00 001111   22334467788888875433122233 3556788899988887    444 333444    8999


Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 007344          139 GLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus       139 GLD~~~~~~i~~~L~~la~  157 (607)
                      ++|.....++.+.|.++..
T Consensus       335 A~~g~gi~~L~~~I~~~l~  353 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQLAT  353 (364)
T ss_dssp             TTTTBSHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHhc
Confidence            9999999999999988653

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.15  E-value=2.7e-06  Score=92.97  Aligned_cols=59  Identities=19%  Similarity=0.343  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHhhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hcCCeEEEEecCCh
Q 007344          112 GGEKKRLSLACELIASPSVIYADEP----------TTGLDAFQAEKVMEALRQLA----QDGHTVICSIHQPR  170 (607)
Q Consensus       112 GGerqRvsIa~aL~~~p~illLDEP----------tsGLD~~~~~~i~~~L~~la----~~g~tvi~~~H~p~  170 (607)
                      |++++|..++.+....|.|||+||+          +.|.|......+.++|..+-    ..+..||.++|+|.
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~  165 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD  165 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence            6778888899999899999999999          34677776677777777763    35678999999874

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.15  E-value=2.2e-07  Score=96.04  Aligned_cols=65  Identities=18%  Similarity=0.268  Sum_probs=51.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcC--CCCCCccceEEEE---CCeeCCCc-cceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLM--ASPRLHLSGLLEV---NGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~--~~~~~~~~G~I~~---~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||+++|+|++.  ++     +|+|.+   +|...... ...++++ |+..+++.+|+.+++.+...++
T Consensus        86 ~G~~GsGKSTl~~~L~~~l~~~~~-----~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~  156 (308)
T 1sq5_A           86 AGSVAVGKSTTARVLQALLSRWPE-----HRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK  156 (308)
T ss_dssp             EECTTSSHHHHHHHHHHHHTTSTT-----CCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHHhhCCC-----CCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence            59999999999999999877  65     799999   88764322 2347888 8777788899999998876654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.15  E-value=1.9e-09  Score=107.96  Aligned_cols=105  Identities=19%  Similarity=0.247  Sum_probs=66.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCC-CCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQED-LFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||+|||||+++|++...       .|.+.++|.++...     ..++++++|+. ...+.+++.|++......+...
T Consensus        55 ~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~  127 (254)
T 1ixz_A           55 VGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG  127 (254)
T ss_dssp             ECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-----
T ss_pred             ECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcc
Confidence            49999999999999999763       57888887654211     23466777764 3456677777774433221100


Q ss_pred             -CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCe
Q 007344           75 -ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSV  130 (607)
Q Consensus        75 -~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~i  130 (607)
                       ....++..+.+.+++                  ..|||||+||+.|++++..+|++
T Consensus       128 ~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~  166 (254)
T 1ixz_A          128 VGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI  166 (254)
T ss_dssp             ----CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred             ccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence             001122233333333                  24789999999999999999976

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.11  E-value=1.1e-06  Score=84.09  Aligned_cols=37  Identities=14%  Similarity=0.202  Sum_probs=32.8

Q ss_pred             HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344          118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus       118 vsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      ...|++++.+|+++++|  ||++|.....++++.|.+..
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence            45689999999999999  99999999999999887754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.10  E-value=4.3e-06  Score=88.08  Aligned_cols=62  Identities=11%  Similarity=0.086  Sum_probs=48.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEe--cCCh
Q 007344          107 VRGISGGEKKRLSLACELIASPSVIYAD-EPTTGLDAFQAEKVMEALRQLAQDGHTVICSI--HQPR  170 (607)
Q Consensus       107 ~~~LSGGerqRvsIa~aL~~~p~illLD-EPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~--H~p~  170 (607)
                      ...+|+||+|++. +.+...++-++++| +|++|+|......+++.+++... +..+|++.  ||..
T Consensus       229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~  293 (357)
T 2e87_A          229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA  293 (357)
T ss_dssp             STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred             hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence            4568999998876 55555777889999 99999999998888887777654 67777777  7743

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.06  E-value=5.6e-07  Score=89.01  Aligned_cols=46  Identities=20%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------------ccceEEEEccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------------KAYKFAYVRQE   51 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------------~~~~i~yv~Q~   51 (607)
                      +|||||||||||++|+|.+.++     +|+|.++|.++..             ....++||+|+
T Consensus        33 ~GpnGsGKSTll~~i~g~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           33 SGGNGAGKSTTMAAFVTALIPD-----LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             HSCCSHHHHHHHHHHHHHHSCC-----TTTC------------------CGGGBCSSEEEEEEE
T ss_pred             ECCCCCCHHHHHHHHhcccccC-----CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            5999999999999999999887     7899999876521             02348888884

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.97  E-value=1e-05  Score=93.77  Aligned_cols=76  Identities=17%  Similarity=0.118  Sum_probs=59.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCeEEEE-ecCChhHHHhhhcceee
Q 007344          106 KVRGISGGEKKRLSLACELIASPSVIYADEPTT-GLDAFQAEKVMEALRQLAQDGHTVICS-IHQPRGSVYFKFDDIVL  182 (607)
Q Consensus       106 ~~~~LSGGerqRvsIa~aL~~~p~illLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~~-~H~p~~~i~~~~D~v~l  182 (607)
                      .+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++|++| ||++ ..+...+++..+
T Consensus       187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~~v  264 (773)
T 2xau_A          187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDAPL  264 (773)
T ss_dssp             SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSCCE
T ss_pred             CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCCCc
Confidence            455689999999999999999999999999996 999887777777776655556677775 8875 456666765433

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.97  E-value=6.7e-06  Score=89.17  Aligned_cols=97  Identities=11%  Similarity=0.133  Sum_probs=66.0

Q ss_pred             hCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceee-ecCCeeeeeCCCCCc-hhhHh
Q 007344          126 ASPSVIYADEPTTGLDA-FQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL-LTEGKLVYAGPARDE-PLAYF  202 (607)
Q Consensus       126 ~~p~illLDEPtsGLD~-~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~l-L~~G~iv~~G~~~~~-~~~~f  202 (607)
                      .+|++|++||+..-.+. .+...+...+..+.+.|+.+|+++|.+..++..+.+++.- +..|.++..++++.. ....+
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL  272 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA  272 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence            38999999999887664 6778899999998888999999999876544334444443 567888888877653 22222


Q ss_pred             ----hhcCCCCCCCCCHHHHHHHhhc
Q 007344          203 ----SRFGYTCPDHVNPAEFLADLIS  224 (607)
Q Consensus       203 ----~~~g~~~p~~~~~ad~~~~~~~  224 (607)
                          +..|...+  ....+++.....
T Consensus       273 ~~~~~~~~~~i~--~e~l~~la~~~~  296 (440)
T 2z4s_A          273 RKMLEIEHGELP--EEVLNFVAENVD  296 (440)
T ss_dssp             HHHHHHHTCCCC--TTHHHHHHHHCC
T ss_pred             HHHHHHcCCCCC--HHHHHHHHHhcC
Confidence                33455443  345677665543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.90  E-value=4e-07  Score=87.37  Aligned_cols=54  Identities=20%  Similarity=0.335  Sum_probs=35.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-----ccceEEEEccCCCCCCCCCHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-----KAYKFAYVRQEDLFFSQLTVRET   63 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~E~   63 (607)
                      +||||||||||+++|+|+.+         .+.+++.....     ....++|++|++..++.+++.++
T Consensus        13 ~Gp~GsGKSTl~~~L~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (205)
T 3tr0_A           13 SAPSGAGKTSLVRALVKALA---------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA   71 (205)
T ss_dssp             ECCTTSCHHHHHHHHHHHSS---------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred             ECcCCCCHHHHHHHHHhhCC---------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence            59999999999999999853         23444433322     12347899998765555444433

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.84  E-value=3.7e-06  Score=88.55  Aligned_cols=21  Identities=33%  Similarity=0.335  Sum_probs=18.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      .||||||||||+..+++...+
T Consensus        67 ~GppGsGKSTLal~la~~~~~   87 (356)
T 3hr8_A           67 FGQESSGKTTLALHAIAEAQK   87 (356)
T ss_dssp             EESTTSSHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHh
Confidence            499999999999999987654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.78  E-value=3.1e-06  Score=92.41  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=31.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS   39 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~   39 (607)
                      +|||||||||||++|+|+++++     +|+|.++|+++.
T Consensus        35 iG~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~~   68 (483)
T 3euj_A           35 SGGNGAGKSTTMAGFVTALIPD-----LTLLNFRNTTEA   68 (483)
T ss_dssp             ECCTTSSHHHHHHHHHHHHCCC-----TTTCCCCCTTSC
T ss_pred             ECCCCCcHHHHHHHHhcCCCCC-----CCEEEECCEEcc
Confidence            5999999999999999999887     799999998764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.75  E-value=2.1e-09  Score=106.23  Aligned_cols=65  Identities=17%  Similarity=0.072  Sum_probs=31.0

Q ss_pred             hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-----cCCeEEEEecCChhHHHhhhcceeeecCCeeee
Q 007344          125 IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-----DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVY  190 (607)
Q Consensus       125 ~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-----~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~  190 (607)
                      +..|+...+||++.+.|..+...+.+.+++...     ....++++.|+ ..++....++++-..+++..+
T Consensus       146 v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~-~e~~~~~l~~~i~~~~~~~~~  215 (231)
T 3lnc_A          146 IMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNED-IEETADRISNILRAEQMKTCR  215 (231)
T ss_dssp             EECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSS-HHHHHHHHHHHHHHHHTBGGG
T ss_pred             EECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcC-HHHHHHHHHHHHHHHhhcccc
Confidence            456677778899999998888887777665432     23467777776 445666666666555555443

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.70  E-value=5.9e-05  Score=79.11  Aligned_cols=44  Identities=5%  Similarity=-0.109  Sum_probs=35.2

Q ss_pred             hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCeEEEEecCCh
Q 007344          126 ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ---DGHTVICSIHQPR  170 (607)
Q Consensus       126 ~~p~illLDEPtsGLD~~~~~~i~~~L~~la~---~g~tvi~~~H~p~  170 (607)
                      .+|.++++||+... |......+.+.+.++..   .+.++|+++|++.
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~  170 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA  170 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence            45889999999876 88888888887776665   5778999999873

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.58  E-value=9e-08  Score=101.73  Aligned_cols=125  Identities=14%  Similarity=0.099  Sum_probs=67.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPEILSVE   79 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~   79 (607)
                      +||||||||||+++|+|..        +|.+..-+.+.......+|+++|... ++++.+....+    ..+.... ...
T Consensus       175 ~G~~GsGKSTl~~~l~~~~--------~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~----~r~l~~~-~~~  241 (377)
T 1svm_A          175 KGPIDSGKTTLAAALLELC--------GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGE----SRDLPSG-QGI  241 (377)
T ss_dssp             ECSTTSSHHHHHHHHHHHH--------CCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTT----TTTCCCC-SHH
T ss_pred             ECCCCCCHHHHHHHHHhhc--------CCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHH----Hhhcccc-Ccc
Confidence            4999999999999999853        46665422111111223677777754 34444332211    0000000 110


Q ss_pred             HHHHHHHHHHHH---cCCCc-cc---c----ccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEE-EeCCCC
Q 007344           80 ERDEYVNSLLFK---LGLVS-CA---D----SNVGDAKVRGISGGEKKRLSLACELIASPSVIY-ADEPTT  138 (607)
Q Consensus        80 ~~~~~v~~~l~~---lgL~~-~~---d----~~vg~~~~~~LSGGerqRvsIa~aL~~~p~ill-LDEPts  138 (607)
                      .....+.+.++.   +.+.. ..   +    ...-+.....+++|+++|+..+++++.+|++++ ||+|+.
T Consensus       242 ~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~  312 (377)
T 1svm_A          242 NNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF  312 (377)
T ss_dssp             HHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred             hHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence            011223344431   11110 00   0    001122456689999999998888888999887 999997

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.57  E-value=1.8e-06  Score=83.06  Aligned_cols=43  Identities=28%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQED   52 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~   52 (607)
                      +||||||||||+++|+|.+         |.+.++|.++...    ....|+++|+.
T Consensus        35 ~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~~~~~~~~~~~~~g~~~~~~   81 (200)
T 4eun_A           35 MGVSGSGKTTIAHGVADET---------GLEFAEADAFHSPENIATMQRGIPLTDE   81 (200)
T ss_dssp             ECCTTSCHHHHHHHHHHHH---------CCEEEEGGGGSCHHHHHHHHTTCCCCHH
T ss_pred             ECCCCCCHHHHHHHHHHhh---------CCeEEcccccccHHHHHHHhcCCCCCCc
Confidence            5999999999999999963         7788888765432    12356666653

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.52  E-value=7.8e-05  Score=77.86  Aligned_cols=53  Identities=11%  Similarity=0.179  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEe
Q 007344          109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD--GHTVICSI  166 (607)
Q Consensus       109 ~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~--g~tvi~~~  166 (607)
                      .||++|.+|+..|...+.++++++.|+|...     ..++...++++.++  |..+|++=
T Consensus       109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVID  163 (338)
T 4a1f_A          109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFID  163 (338)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEe
Confidence            5999999999999999999999999998654     34677777777644  56666664

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.47  E-value=5.6e-06  Score=79.66  Aligned_cols=70  Identities=13%  Similarity=0.066  Sum_probs=38.9

Q ss_pred             CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhH-HHhhhcceeeec
Q 007344          111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS-VYFKFDDIVLLT  184 (607)
Q Consensus       111 SGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~-i~~~~D~v~lL~  184 (607)
                      +.|+.+|..++..+..+|+.+..+  ++.++|.....+.+.++..  .+.++|+.+|..... +...||.+++++
T Consensus        61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~  131 (206)
T 1jjv_A           61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD  131 (206)
T ss_dssp             -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred             cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence            678889999998888887654333  2345555555544444322  355888888864322 245567777663

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.47  E-value=0.00039  Score=70.50  Aligned_cols=60  Identities=22%  Similarity=0.309  Sum_probs=37.7

Q ss_pred             CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----cCCeEEEEecCCh
Q 007344          111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAF----------QAEKVMEALRQLAQ----DGHTVICSIHQPR  170 (607)
Q Consensus       111 SGGerqRvsIa~aL~~~p~illLDEPtsGLD~~----------~~~~i~~~L~~la~----~g~tvi~~~H~p~  170 (607)
                      +++++.|..++.+...+|.+|++||+.+-++..          ....++..+.....    .+..+|.++++|.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~  170 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ  170 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence            356677777777778899999999998765532          22233444433321    2346777888753

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.37  E-value=0.00022  Score=73.24  Aligned_cols=64  Identities=16%  Similarity=0.124  Sum_probs=46.2

Q ss_pred             CCHHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhc-CC--eEEEEecCChhHHHhhhccee
Q 007344          110 ISGGEKKRLSLACELI--ASPSVIYADEPTTGLDAFQ-AEKVMEALRQLAQD-GH--TVICSIHQPRGSVYFKFDDIV  181 (607)
Q Consensus       110 LSGGerqRvsIa~aL~--~~p~illLDEPtsGLD~~~-~~~i~~~L~~la~~-g~--tvi~~~H~p~~~i~~~~D~v~  181 (607)
                      +|+|++   .+++.+.  ..|.++++    +.+|... ...+.+.++++++. |.  .+.++.|+ ...+..++|.+.
T Consensus       101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~-g~~v~~l~~~i~  170 (301)
T 1ega_A          101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET-GLNVDTIAAIVR  170 (301)
T ss_dssp             CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT-TTTHHHHHHHHH
T ss_pred             CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC-CCCHHHHHHHHH
Confidence            899986   4566666  67999998    7899876 66778888888753 43  56666676 345677777665

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.32  E-value=1.2e-06  Score=96.42  Aligned_cols=110  Identities=19%  Similarity=0.249  Sum_probs=67.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||+|||||+++|++...       .+.+.++|.++...     ..++..++|... ..+.+.+.|++......+...
T Consensus        70 ~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~  142 (499)
T 2dhr_A           70 VGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG  142 (499)
T ss_dssp             ECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSS
T ss_pred             ECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccC
Confidence            49999999999999999753       46788888765332     123556666542 344455555553221111100


Q ss_pred             -CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 007344           75 -ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPT  137 (607)
Q Consensus        75 -~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPt  137 (607)
                       ....++..+.+.+++.                  .|||||+|+..|+++...+|++  |||+.
T Consensus       143 ~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL  186 (499)
T 2dhr_A          143 VGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL  186 (499)
T ss_dssp             TTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred             cCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence             0112333444455443                  3678888888888888888987  78775

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.20  E-value=0.0023  Score=67.06  Aligned_cols=57  Identities=14%  Similarity=0.111  Sum_probs=40.4

Q ss_pred             CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-eEEEEec
Q 007344          110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH-TVICSIH  167 (607)
Q Consensus       110 LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~-tvi~~~H  167 (607)
                      -++.++++..+++..+.+|+++++.-..+..|..+ ...++.++.+...|. ++++.+.
T Consensus       155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK  212 (360)
T 3t34_A          155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK  212 (360)
T ss_dssp             CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred             chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence            56788999999999999999877774334445443 455667777766664 6666654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.12  E-value=3e-05  Score=77.53  Aligned_cols=47  Identities=30%  Similarity=0.293  Sum_probs=36.6

Q ss_pred             CCCCCCcHHHHHHHHH---cCcCCCCCCccceEEE--------ECCeeCCCc------cceEEEEccCC
Q 007344            1 MGPSGSGKTTLLNVLA---GQLMASPRLHLSGLLE--------VNGKPSSNK------AYKFAYVRQED   52 (607)
Q Consensus         1 lGpsGsGKSTLL~~La---G~~~~~~~~~~~G~I~--------~~G~~~~~~------~~~i~yv~Q~~   52 (607)
                      +|||||||||++++|+   |...++     +|.+.        .+|.++...      ...+++++|.+
T Consensus        33 ~G~~GsGKSTl~k~La~~Lg~~~~d-----~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   96 (252)
T 4e22_A           33 DGPSGAGKGTLCKALAESLNWRLLD-----SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ   96 (252)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCEEEE-----HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCcCC-----CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence            5999999999999999   987766     78888        888776432      23478888753

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.08  E-value=7.6e-05  Score=77.87  Aligned_cols=20  Identities=30%  Similarity=0.605  Sum_probs=17.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      .||+|+|||||++.+++...
T Consensus        51 ~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           51 YGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             EECTTSSHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            49999999999999998764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.04  E-value=0.00012  Score=69.06  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=18.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      +||||||||||+++|++..++
T Consensus        11 ~GpsGsGKSTL~~~L~~~~~~   31 (180)
T 1kgd_A           11 LGAHGVGRRHIKNTLITKHPD   31 (180)
T ss_dssp             ECCTTSSHHHHHHHHHHHCTT
T ss_pred             ECCCCCCHHHHHHHHHhhCCc
Confidence            599999999999999998753

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.97  E-value=0.00017  Score=68.80  Aligned_cols=22  Identities=36%  Similarity=0.454  Sum_probs=19.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMAS   22 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~   22 (607)
                      +||||||||||+++|++...++
T Consensus        12 ~G~~GsGKSTl~~~L~~~~~~~   33 (207)
T 2j41_A           12 SGPSGVGKGTVRKRIFEDPSTS   33 (207)
T ss_dssp             ECSTTSCHHHHHHHHHHCTTCC
T ss_pred             ECCCCCCHHHHHHHHHHhhCCC
Confidence            5999999999999999998543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.91  E-value=0.0015  Score=67.15  Aligned_cols=47  Identities=9%  Similarity=0.014  Sum_probs=36.1

Q ss_pred             hhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCeEEEEecCChh
Q 007344          125 IASPSVIYADEPTT-GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG  171 (607)
Q Consensus       125 ~~~p~illLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~  171 (607)
                      ..++++|++||+-. .-+......+...+..+.+.|..+|++++.+..
T Consensus        96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~  143 (324)
T 1l8q_A           96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ  143 (324)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred             hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence            35799999999865 334477888899998888878888888776543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.91  E-value=0.0015  Score=70.41  Aligned_cols=50  Identities=14%  Similarity=0.126  Sum_probs=33.0

Q ss_pred             HHHHHHhhCCCeEEEeCCC-CC--CCHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 007344          119 SLACELIASPSVIYADEPT-TG--LDAFQAEKVMEALRQLAQDGHTVICSIHQ  168 (607)
Q Consensus       119 sIa~aL~~~p~illLDEPt-sG--LD~~~~~~i~~~L~~la~~g~tvi~~~H~  168 (607)
                      +++.+...+++++++|+|- .+  .|+....++.++++.+......+++..|.
T Consensus       171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~  223 (433)
T 3kl4_A          171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI  223 (433)
T ss_dssp             HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred             HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence            4444445689999999997 35  78877777777666554444455555554

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.89  E-value=0.001  Score=63.22  Aligned_cols=51  Identities=10%  Similarity=0.129  Sum_probs=29.5

Q ss_pred             hhCCCeEEEeCCCC-CCCHHHHHHHH-HHHHHHHhcCCeEEEEecCChhHHHh
Q 007344          125 IASPSVIYADEPTT-GLDAFQAEKVM-EALRQLAQDGHTVICSIHQPRGSVYF  175 (607)
Q Consensus       125 ~~~p~illLDEPts-GLD~~~~~~i~-~~L~~la~~g~tvi~~~H~p~~~i~~  175 (607)
                      +.++++|++||+-. .++......++ .++......+..+|++++.+..++..
T Consensus       113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~  165 (202)
T 2w58_A          113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAH  165 (202)
T ss_dssp             HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHH
T ss_pred             hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH
Confidence            34678999999932 23333333344 45555545667777777766555544

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.81  E-value=0.0041  Score=64.89  Aligned_cols=53  Identities=8%  Similarity=0.091  Sum_probs=36.4

Q ss_pred             HHHHHHHHHh----hCCCeEEEeCCCCCCCHH------------HHHHHHHHHHHHHh-cCCeEEEEecC
Q 007344          116 KRLSLACELI----ASPSVIYADEPTTGLDAF------------QAEKVMEALRQLAQ-DGHTVICSIHQ  168 (607)
Q Consensus       116 qRvsIa~aL~----~~p~illLDEPtsGLD~~------------~~~~i~~~L~~la~-~g~tvi~~~H~  168 (607)
                      +.+..++.++    .+++++++|+.++-.+..            ...++++.|+++++ .|.+||++.|-
T Consensus       204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~  273 (343)
T 1v5w_A          204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM  273 (343)
T ss_dssp             HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence            4455566666    568999999999865432            13456666777764 57888888775

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.79  E-value=0.00013  Score=69.86  Aligned_cols=33  Identities=39%  Similarity=0.508  Sum_probs=26.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEE--EECCeeCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLL--EVNGKPSS   39 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I--~~~G~~~~   39 (607)
                      +||||||||||+++|++++. .     .|.+  .++|..+.
T Consensus        31 ~G~sGsGKSTl~~~La~~l~-~-----~G~~~~~~d~d~~~   65 (200)
T 3uie_A           31 TGLSGSGKSTLACALNQMLY-Q-----KGKLCYILDGDNVR   65 (200)
T ss_dssp             ECSTTSSHHHHHHHHHHHHH-H-----TTCCEEEEEHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHHH-h-----cCceEEEecCchhh
Confidence            59999999999999999875 2     4665  77776553

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.77  E-value=0.0003  Score=65.93  Aligned_cols=22  Identities=27%  Similarity=0.372  Sum_probs=19.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMAS   22 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~   22 (607)
                      +||||||||||+++|.+.+.+.
T Consensus        32 ~G~NGsGKStll~ai~~~l~~~   53 (182)
T 3kta_A           32 VGANGSGKSNIGDAILFVLGGL   53 (182)
T ss_dssp             EECTTSSHHHHHHHHHHHTTCC
T ss_pred             ECCCCCCHHHHHHHHHHHHcCC
Confidence            5999999999999999977653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.66  E-value=0.00032  Score=68.85  Aligned_cols=29  Identities=34%  Similarity=0.373  Sum_probs=24.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS   38 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~   38 (607)
                      .|+||||||||+++|+|.         .|+|.+++++.
T Consensus        26 ~G~~GsGKSTl~~~L~~~---------~g~v~~~~~~~   54 (230)
T 2vp4_A           26 EGNIGSGKTTYLNHFEKY---------KNDICLLTEPV   54 (230)
T ss_dssp             ECSTTSCHHHHHHTTGGG---------TTTEEEECCTH
T ss_pred             ECCCCCCHHHHHHHHHhc---------cCCeEEEecCH
Confidence            499999999999999996         36788887664

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.61  E-value=0.0004  Score=72.03  Aligned_cols=60  Identities=18%  Similarity=0.124  Sum_probs=39.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------------cceEEEE-ccCCCCCCCCCHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------------AYKFAYV-RQEDLFFSQLTVRETLS   65 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------------~~~i~yv-~Q~~~l~~~lTV~E~l~   65 (607)
                      +|+||+||||++..|++.+.+.     .|+|.+.+.+....              ...+.++ .|.....+..++.+++.
T Consensus       111 vG~~G~GKTT~~~~LA~~l~~~-----g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l~  185 (320)
T 1zu4_A          111 VGVNGTGKTTSLAKMANYYAEL-----GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIK  185 (320)
T ss_dssp             ESSTTSSHHHHHHHHHHHHHHT-----TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHHHH
Confidence            4999999999999999998765     57888877654321              2247788 66544333333444443

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.59  E-value=0.00058  Score=77.75  Aligned_cols=41  Identities=10%  Similarity=0.120  Sum_probs=30.7

Q ss_pred             hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCCh
Q 007344          125 IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR  170 (607)
Q Consensus       125 ~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~  170 (607)
                      ..+.-++++| |+.|+++.+.    +.++.+.+.|.++|+++|...
T Consensus        97 ~ad~~ilVvD-~~~g~~~qt~----~~~~~~~~~~ip~ilv~NKiD  137 (665)
T 2dy1_A           97 AADAALVAVS-AEAGVQVGTE----RAWTVAERLGLPRMVVVTKLD  137 (665)
T ss_dssp             HCSEEEEEEE-TTTCSCHHHH----HHHHHHHHTTCCEEEEEECGG
T ss_pred             hcCcEEEEEc-CCcccchhHH----HHHHHHHHccCCEEEEecCCc
Confidence            5677899999 9999998776    333444456888899998753

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.58  E-value=0.0018  Score=66.19  Aligned_cols=19  Identities=42%  Similarity=0.730  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||||+++|++..
T Consensus        55 ~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           55 YGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             ECSSSSSHHHHHHHHHHHT
T ss_pred             ECCCCcCHHHHHHHHHHHh
Confidence            4999999999999999864

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.57  E-value=0.0061  Score=62.92  Aligned_cols=54  Identities=24%  Similarity=0.180  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHh---hCCCeEEEeCCCCCCCH--------H----HHHHHHHHHHHHH-hcCCeEEEEecC
Q 007344          115 KKRLSLACELI---ASPSVIYADEPTTGLDA--------F----QAEKVMEALRQLA-QDGHTVICSIHQ  168 (607)
Q Consensus       115 rqRvsIa~aL~---~~p~illLDEPtsGLD~--------~----~~~~i~~~L~~la-~~g~tvi~~~H~  168 (607)
                      .+.+..++.++   .+|+++++|+.++-.+.        .    ...++++.|++++ +.|.+||++.|-
T Consensus       188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~  257 (324)
T 2z43_A          188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV  257 (324)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence            35677777787   57999999999875532        1    1245666666766 458888888774

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.55  E-value=0.0036  Score=64.43  Aligned_cols=53  Identities=13%  Similarity=0.135  Sum_probs=41.3

Q ss_pred             CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCe--EEEEec
Q 007344          110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHT--VICSIH  167 (607)
Q Consensus       110 LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~-g~t--vi~~~H  167 (607)
                      ||++|++|+..|...+.++++++.|+|...     ..++.+.++++.++ |..  +|++=|
T Consensus       134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~  189 (315)
T 3bh0_A          134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDY  189 (315)
T ss_dssp             HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            899999999999999999999999998643     45567777777643 555  666644

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.52  E-value=0.00066  Score=62.79  Aligned_cols=19  Identities=53%  Similarity=0.793  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||||||||||+++|++.+
T Consensus        10 ~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A           10 VGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             ECCTTSCHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999999975

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.48  E-value=0.00087  Score=64.59  Aligned_cols=21  Identities=33%  Similarity=0.446  Sum_probs=19.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      +||||||||||++.|++..++
T Consensus        14 ~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A           14 SGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             ECCTTSCHHHHHHHHHHSTTC
T ss_pred             ECcCCCCHHHHHHHHHhhCCC
Confidence            599999999999999998765

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.44  E-value=0.00034  Score=67.08  Aligned_cols=31  Identities=39%  Similarity=0.231  Sum_probs=24.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCe
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK   36 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~   36 (607)
                      +|+||||||||+++|++.+++.     .|.|.+.+.
T Consensus        28 ~G~~GsGKstl~~~l~~~~~~~-----~~~v~~~~~   58 (201)
T 1rz3_A           28 DGLSRSGKTTLANQLSQTLREQ-----GISVCVFHM   58 (201)
T ss_dssp             EECTTSSHHHHHHHHHHHHHHT-----TCCEEEEEG
T ss_pred             ECCCCCCHHHHHHHHHHHHhhc-----CCeEEEecc
Confidence            4999999999999999987654     466665543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.40  E-value=0.00076  Score=64.93  Aligned_cols=20  Identities=35%  Similarity=0.547  Sum_probs=18.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +||||||||||++.|++..+
T Consensus        25 ~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           25 IGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ECCTTSSHHHHHHHHHHHCT
T ss_pred             ECcCCCCHHHHHHHHHhhCC
Confidence            59999999999999999765

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.38  E-value=0.00063  Score=63.21  Aligned_cols=29  Identities=38%  Similarity=0.445  Sum_probs=23.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS   38 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~   38 (607)
                      +|+|||||||++++|++.+         |.+.+++..+
T Consensus        14 ~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~~   42 (175)
T 1knq_A           14 MGVSGSGKSAVASEVAHQL---------HAAFLDGDFL   42 (175)
T ss_dssp             ECSTTSCHHHHHHHHHHHH---------TCEEEEGGGG
T ss_pred             EcCCCCCHHHHHHHHHHhh---------CcEEEeCccc
Confidence            5999999999999999863         5566766443

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.34  E-value=0.0022  Score=61.99  Aligned_cols=45  Identities=13%  Similarity=0.193  Sum_probs=31.6

Q ss_pred             hCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCe-EEEEecCCh
Q 007344          126 ASPSVIYADEPTTGL-DAFQAEKVMEALRQLAQDGHT-VICSIHQPR  170 (607)
Q Consensus       126 ~~p~illLDEPtsGL-D~~~~~~i~~~L~~la~~g~t-vi~~~H~p~  170 (607)
                      .+|.++++||.-.-- +......+.+.+....+.+.. +|++++.+.
T Consensus       103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~  149 (242)
T 3bos_A          103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP  149 (242)
T ss_dssp             GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred             cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence            568999999965432 233367788888888776765 777777543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.29  E-value=0.021  Score=55.76  Aligned_cols=43  Identities=7%  Similarity=0.143  Sum_probs=28.3

Q ss_pred             hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCeEEEEecC
Q 007344          126 ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ--DGHTVICSIHQ  168 (607)
Q Consensus       126 ~~p~illLDEPtsGLD~~~~~~i~~~L~~la~--~g~tvi~~~H~  168 (607)
                      .+|+++++..+.+.++......+..+++.+..  ...++|+.+|-
T Consensus       111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~  155 (239)
T 3lxx_A          111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK  155 (239)
T ss_dssp             TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred             CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence            36899999999888888665555444443322  12477888873

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.19  E-value=0.0033  Score=67.78  Aligned_cols=38  Identities=24%  Similarity=0.378  Sum_probs=27.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC-------CCCCccceEEEECCeeC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA-------SPRLHLSGLLEVNGKPS   38 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~-------~~~~~~~G~I~~~G~~~   38 (607)
                      +|+||+|||||+|.|+|....       ...-...|.+.++|.++
T Consensus       186 vG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          186 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             ECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            699999999999999997531       00112468899998754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.17  E-value=0.002  Score=61.57  Aligned_cols=19  Identities=47%  Similarity=0.555  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|+||||||||++.|++.+
T Consensus        27 ~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           27 SGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             EESTTSSHHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHHHhc
Confidence            4999999999999999974

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.16  E-value=0.01  Score=59.45  Aligned_cols=46  Identities=24%  Similarity=0.384  Sum_probs=30.1

Q ss_pred             HhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHH---h-cCCeEEEEecCC
Q 007344          124 LIASPSVIYADEPTT----------GLDAFQAEKVMEALRQLA---Q-DGHTVICSIHQP  169 (607)
Q Consensus       124 L~~~p~illLDEPts----------GLD~~~~~~i~~~L~~la---~-~g~tvi~~~H~p  169 (607)
                      .-.+|.+|++||.-.          +-+......+.+++..+.   . .+..+|++++.|
T Consensus       107 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~  166 (285)
T 3h4m_A          107 KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP  166 (285)
T ss_dssp             HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred             HHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence            345688999999733          125566677777777763   1 244677777765

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.15  E-value=0.00095  Score=65.50  Aligned_cols=67  Identities=16%  Similarity=-0.000  Sum_probs=41.5

Q ss_pred             CHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcc
Q 007344          111 SGGEKKRLSLACELIASPSVIYADEPTT-GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD  179 (607)
Q Consensus       111 SGGerqRvsIa~aL~~~p~illLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~  179 (607)
                      +.|...+..  ...+.+-+++++||.-. ++|.......++.+.+...+-+++++|..-+.....+.|++
T Consensus       162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~  229 (235)
T 3llm_A          162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN  229 (235)
T ss_dssp             EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred             CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence            456655543  33578899999999976 78877665555555444333346666665555555455443

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.14  E-value=0.0014  Score=67.90  Aligned_cols=21  Identities=33%  Similarity=0.373  Sum_probs=18.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      +||||||||||+++|++++..
T Consensus        98 ~GpsGSGKSTl~~~L~~ll~~  118 (321)
T 3tqc_A           98 AGSVAVGKSTTSRVLKALLSR  118 (321)
T ss_dssp             ECCTTSSHHHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHHhcc
Confidence            499999999999999998763

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.11  E-value=0.00089  Score=74.43  Aligned_cols=33  Identities=39%  Similarity=0.613  Sum_probs=26.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccce-EEE-ECCeeC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSG-LLE-VNGKPS   38 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G-~I~-~~G~~~   38 (607)
                      +|+||||||||+++|+|++.+.     +| ++. ++|...
T Consensus       375 iG~sGSGKSTLar~La~~L~~~-----~G~~i~~lDgD~~  409 (552)
T 3cr8_A          375 TGLSGAGKSTLARALAARLMEM-----GGRCVTLLDGDIV  409 (552)
T ss_dssp             EESSCHHHHHHHHHHHHHHHTT-----CSSCEEEESSHHH
T ss_pred             ECCCCChHHHHHHHHHHhhccc-----CCceEEEECCcHH
Confidence            5999999999999999998765     44 674 777543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.10  E-value=0.0034  Score=65.31  Aligned_cols=19  Identities=32%  Similarity=0.604  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||||++.++...
T Consensus        50 ~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           50 YGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CBCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4999999999999999865

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.99  E-value=0.017  Score=56.84  Aligned_cols=19  Identities=42%  Similarity=0.744  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||||.++|+...
T Consensus        45 ~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           45 LGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             ESCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            3999999999999999854

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.87  E-value=0.02  Score=59.87  Aligned_cols=19  Identities=42%  Similarity=0.714  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||||.++|+...
T Consensus       123 ~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          123 FGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             ESSTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHc
Confidence            3999999999999999754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.65  E-value=0.0037  Score=57.14  Aligned_cols=17  Identities=41%  Similarity=0.784  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAG   17 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG   17 (607)
                      +|||||||||++++|.-
T Consensus        29 ~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           29 IGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999974

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.63  E-value=0.0018  Score=67.76  Aligned_cols=31  Identities=29%  Similarity=0.465  Sum_probs=24.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCe
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK   36 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~   36 (607)
                      +|++|||||||+|.|+|...+.     +|+|.+.+.
T Consensus        80 vG~pgaGKSTLln~L~~~~~~~-----~~~v~V~~~  110 (349)
T 2www_A           80 SGPPGAGKSTFIEYFGKMLTER-----GHKLSVLAV  110 (349)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEEC
T ss_pred             EcCCCCCHHHHHHHHHHHhhhc-----CCeEEEEee
Confidence            5999999999999999977654     466655443

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=95.61  E-value=0.00075  Score=74.47  Aligned_cols=141  Identities=14%  Similarity=0.082  Sum_probs=69.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC-----------------------C--CC--------CccceEEEECCeeCCCc------
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA-----------------------S--PR--------LHLSGLLEVNGKPSSNK------   41 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~-----------------------~--~~--------~~~~G~I~~~G~~~~~~------   41 (607)
                      +|+|||||||||++|......                       .  ..        ..-.+.+.+||.+.+..      
T Consensus        66 ~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~  145 (517)
T 4ad8_A           66 TGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEWA  145 (517)
T ss_dssp             EESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCEEESSSSBCCHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcEEEECCEECCHHHHHHHh
Confidence            599999999999999654210                       0  00        00145688888876542      


Q ss_pred             cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCcCCCCCHHHHHHHHH
Q 007344           42 AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLG-LVSCADSNVGDAKVRGISGGEKKRLSL  120 (607)
Q Consensus        42 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSGGerqRvsI  120 (607)
                      ...+..++|++.+....+. +...|--..................++++.++ +....     ......++-.+.|...|
T Consensus       146 ~~li~i~~q~~~~~l~~~~-~rr~~LD~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~l~~l~~ql~ei  219 (517)
T 4ad8_A          146 QGRLTIHWQHSAVSLLSPA-NQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASQ-----RERARQIDLLAFQVQEI  219 (517)
T ss_dssp             TTTEEEESGGGGGTTTSHH-HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred             hhheEEeCCchHHhcCCHH-HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHH
Confidence            1237888998766554333 22222211100000000111111222222221 10000     01123466777788888


Q ss_pred             HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeE
Q 007344          121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTV  162 (607)
Q Consensus       121 a~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tv  162 (607)
                      +.+               .|.+.....+.+.++++.+.+..+
T Consensus       220 ~~~---------------~l~~~E~e~L~~~~~~L~~~~~~~  246 (517)
T 4ad8_A          220 SEV---------------SPDPGEEEGLNTELSRLSNLHESS  246 (517)
T ss_dssp             HHH---------------CCCSSCHHHHHHHHHHHHHHC---
T ss_pred             Hhc---------------CCCCCcHHHHHHHHHHHHHHHHHH
Confidence            776               344455677777888887666555

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.52  E-value=0.0094  Score=55.04  Aligned_cols=19  Identities=47%  Similarity=0.760  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|+|..
T Consensus        10 vG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A           10 AGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             EESTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.51  E-value=0.0039  Score=60.16  Aligned_cols=19  Identities=53%  Similarity=0.770  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|||||||||+.++|++.+
T Consensus        11 ~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A           11 DGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999999865

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.36  E-value=0.0063  Score=62.45  Aligned_cols=51  Identities=8%  Similarity=0.096  Sum_probs=30.2

Q ss_pred             hhCCCeEEEeCCC-CCCCHHHHHHHHH-HHHHHHhcCCeEEEEecCChhHHHh
Q 007344          125 IASPSVIYADEPT-TGLDAFQAEKVME-ALRQLAQDGHTVICSIHQPRGSVYF  175 (607)
Q Consensus       125 ~~~p~illLDEPt-sGLD~~~~~~i~~-~L~~la~~g~tvi~~~H~p~~~i~~  175 (607)
                      +.++++|++||.- ..++......++. ++......++.+|++++.+..++..
T Consensus       212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~  264 (308)
T 2qgz_A          212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLER  264 (308)
T ss_dssp             HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHT
T ss_pred             hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence            4578999999983 2344444444554 5655444567888888876655544

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.33  E-value=0.095  Score=53.83  Aligned_cols=19  Identities=37%  Similarity=0.719  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||||.++++...
T Consensus        51 ~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           51 FGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             ESSSSSCHHHHHHHHHHHT
T ss_pred             ECCCCccHHHHHHHHHHHc
Confidence            3999999999999999864

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.22  E-value=0.029  Score=58.84  Aligned_cols=76  Identities=18%  Similarity=0.110  Sum_probs=45.3

Q ss_pred             HHHHHHHHh--hCCCeEEEeCCCCCCCHH-------------HHHHHHHHHHHH---H-hcCCeEEEEecCChh------
Q 007344          117 RLSLACELI--ASPSVIYADEPTTGLDAF-------------QAEKVMEALRQL---A-QDGHTVICSIHQPRG------  171 (607)
Q Consensus       117 RvsIa~aL~--~~p~illLDEPtsGLD~~-------------~~~~i~~~L~~l---a-~~g~tvi~~~H~p~~------  171 (607)
                      -..+++.++  .+++++++|+++.-....             .++.+.+.+++|   + +.|.+||++.|-...      
T Consensus       129 ~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg  208 (356)
T 1u94_A          129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG  208 (356)
T ss_dssp             HHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------
T ss_pred             HHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence            345566664  579999999999866311             122344444444   3 568898888774221      


Q ss_pred             ---------HHHhhhcceeeecCCeeeeeC
Q 007344          172 ---------SVYFKFDDIVLLTEGKLVYAG  192 (607)
Q Consensus       172 ---------~i~~~~D~v~lL~~G~iv~~G  192 (607)
                               .+...+|-++.+...+....|
T Consensus       209 ~~~~~~gG~~l~~~advrl~l~r~~~~k~g  238 (356)
T 1u94_A          209 NPETTTGGNALKFYASVRLDIRRIGAVKEG  238 (356)
T ss_dssp             ----CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred             CCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence                     345567877777766544333

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=95.15  E-value=0.0053  Score=65.91  Aligned_cols=22  Identities=32%  Similarity=0.662  Sum_probs=19.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMAS   22 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~   22 (607)
                      +|||||||||||++|++...+.
T Consensus        32 ~G~nG~GKstll~ai~~~~~~~   53 (430)
T 1w1w_A           32 IGPNGSGKSNMMDAISFVLGVR   53 (430)
T ss_dssp             ECSTTSSHHHHHHHHHHHTTC-
T ss_pred             ECCCCCCHHHHHHHHHhhhccc
Confidence            5999999999999999987654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.14  E-value=0.0052  Score=58.39  Aligned_cols=17  Identities=29%  Similarity=0.536  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAG   17 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG   17 (607)
                      +|+|||||||+.+.|++
T Consensus         7 ~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            7 TGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHH
Confidence            49999999999999998

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.07  E-value=0.047  Score=49.06  Aligned_cols=43  Identities=12%  Similarity=0.004  Sum_probs=29.2

Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChh
Q 007344          127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG  171 (607)
Q Consensus       127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~  171 (607)
                      +..+|++||.- .|++.....+.+.++.. ..+..+|+++..+..
T Consensus        76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~  118 (145)
T 3n70_A           76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV  118 (145)
T ss_dssp             TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred             CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence            44689999984 67888888888877332 224567777776543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.98  E-value=0.0081  Score=54.90  Aligned_cols=19  Identities=37%  Similarity=0.709  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|+||+|||||++.++|..
T Consensus         9 vG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            9 IGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             ECSTTSSHHHHHHHHHCCS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999964

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=94.96  E-value=0.0066  Score=57.96  Aligned_cols=20  Identities=40%  Similarity=0.675  Sum_probs=17.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +||||||||||.+.|+..++
T Consensus        18 ~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           18 CGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             ECCTTSCHHHHHHHHHHHCT
T ss_pred             ECCCCCCHHHHHHHHHHhCc
Confidence            59999999999999998653

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.90  E-value=0.0076  Score=56.67  Aligned_cols=34  Identities=38%  Similarity=0.397  Sum_probs=23.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCe
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK   36 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~   36 (607)
                      +|+||||||||++.|.+.++..+  ..-|.|..++.
T Consensus        12 ~G~sGsGKTTl~~~l~~~l~~~g--~~v~~i~~~~~   45 (174)
T 1np6_A           12 AAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTHH   45 (174)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC
T ss_pred             EeCCCCCHHHHHHHHHHhccccC--CceeEEeeCCC
Confidence            49999999999999998764321  11366665543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.82  E-value=0.0065  Score=67.41  Aligned_cols=31  Identities=32%  Similarity=0.453  Sum_probs=25.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCe
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK   36 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~   36 (607)
                      +||||+|||||+++|++...+.     .|.|.++|.
T Consensus       114 ~Gp~GtGKTtlar~ia~~l~~~-----~~~i~~~~~  144 (543)
T 3m6a_A          114 AGPPGVGKTSLAKSIAKSLGRK-----FVRISLGGV  144 (543)
T ss_dssp             ESSSSSSHHHHHHHHHHHHTCE-----EEEECCCC-
T ss_pred             ECCCCCCHHHHHHHHHHhcCCC-----eEEEEeccc
Confidence            4999999999999999988654     577766653

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.77  E-value=0.0087  Score=56.83  Aligned_cols=19  Identities=42%  Similarity=0.597  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|+|||||||+.+.|++.+
T Consensus        24 ~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           24 MGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             ECSTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999999864

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=94.71  E-value=0.009  Score=62.76  Aligned_cols=39  Identities=18%  Similarity=0.187  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHH
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACE  123 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~a  123 (607)
                      .+++++.+++++..+... ..      .....++...|||-++.+.
T Consensus       128 p~~RR~flD~~l~~~~p~-y~------~~l~~y~~~l~qRn~lLk~  166 (359)
T 2o5v_A          128 PSGRRAYLDSLLSRLSAR-YG------EQLSRYERTVSQRNAALRG  166 (359)
T ss_dssp             HHHHHHHHHHHHHHHCHH-HH------HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhcccHH-HH------HHHHHHHHHHHHHHHHHhh
Confidence            567778888887776541 11      1234578899999999884

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.68  E-value=0.0097  Score=56.55  Aligned_cols=19  Identities=47%  Similarity=0.586  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|+|||||||+.+.|++.+
T Consensus        31 ~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           31 TGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHc
Confidence            5999999999999999865

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=94.66  E-value=0.0049  Score=59.19  Aligned_cols=32  Identities=34%  Similarity=0.419  Sum_probs=24.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccce--EEEECCee
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSG--LLEVNGKP   37 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G--~I~~~G~~   37 (607)
                      +|++||||||+.+.|++.+.+.     .|  .+.++|..
T Consensus        31 ~G~~GsGKsT~~~~l~~~l~~~-----~g~~~~~~~~d~   64 (211)
T 1m7g_A           31 TGLSASGKSTLAVELEHQLVRD-----RRVHAYRLDGDN   64 (211)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHH-----HCCCEEEECHHH
T ss_pred             ECCCCCCHHHHHHHHHHHhccc-----cCCcEEEECChH
Confidence            4999999999999999987533     45  66666543

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.60  E-value=0.011  Score=56.72  Aligned_cols=18  Identities=39%  Similarity=0.722  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|||||||||++++|.-.
T Consensus        29 ~G~NgsGKStil~ai~~~   46 (203)
T 3qks_A           29 IGQNGSGKSSLLDAILVG   46 (203)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            499999999999998643

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=94.51  E-value=0.012  Score=53.81  Aligned_cols=19  Identities=32%  Similarity=0.372  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+.+.|+..+
T Consensus         7 ~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            7 EGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             ECSSSSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999999764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.50  E-value=0.012  Score=54.40  Aligned_cols=18  Identities=39%  Similarity=0.804  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.|+|.
T Consensus        13 vG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A           13 IGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             ECSTTSSHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999985

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.47  E-value=0.0055  Score=64.42  Aligned_cols=21  Identities=43%  Similarity=0.504  Sum_probs=17.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      +|+||+|||||++.|.|....
T Consensus        43 vG~~g~GKSTLln~L~~~~~~   63 (361)
T 2qag_A           43 VGESGLGKSTLINSLFLTDLY   63 (361)
T ss_dssp             CCCTTSCHHHHHHHHTTCCC-
T ss_pred             EcCCCCCHHHHHHHHhCCCCC
Confidence            699999999999999886443

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.44  E-value=0.012  Score=54.70  Aligned_cols=19  Identities=53%  Similarity=0.697  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.++|..
T Consensus         8 vG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            8 VGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             ESCTTSSHHHHHHHHTCC-
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999964

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=94.31  E-value=0.013  Score=54.39  Aligned_cols=21  Identities=43%  Similarity=0.534  Sum_probs=18.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      +|++||||||+.+.|++.+++
T Consensus        11 ~G~~GsGKST~~~~L~~~l~~   31 (179)
T 2pez_A           11 TGLSGAGKTTVSMALEEYLVC   31 (179)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHhh
Confidence            499999999999999997643

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.29  E-value=0.18  Score=54.12  Aligned_cols=53  Identities=17%  Similarity=0.187  Sum_probs=38.4

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCeEEEEe
Q 007344          109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICSI  166 (607)
Q Consensus       109 ~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g~tvi~~~  166 (607)
                      .||..+.+|+.-|...+.+.++.+.|+|..  +   ..++...++++. +.|..+|++=
T Consensus       264 ~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s---~~~l~~~~~~l~~~~~~~lIvID  317 (444)
T 2q6t_A          264 QLTDRDFSRLVDVASRLSEAPIYIDDTPDL--T---LMEVRARARRLVSQNQVGLIIID  317 (444)
T ss_dssp             GCCHHHHHHHHHHHHHHHTSCEEEECCTTC--B---HHHHHHHHHHHHHHSCCCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCCEEEECCCCC--C---HHHHHHHHHHHHHHcCCCEEEEc
Confidence            599999999999998888888998887643  3   244566666665 3455655553

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=94.24  E-value=0.0094  Score=55.81  Aligned_cols=21  Identities=48%  Similarity=0.561  Sum_probs=18.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      +|++||||||+.+.|++.+..
T Consensus        19 ~G~~GsGKsT~~~~L~~~l~~   39 (186)
T 2yvu_A           19 TGLPGSGKTTIATRLADLLQK   39 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHHHh
Confidence            499999999999999998754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=94.18  E-value=0.016  Score=53.53  Aligned_cols=20  Identities=30%  Similarity=0.433  Sum_probs=17.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      .|+|||||||+.+.|+..+.
T Consensus         9 ~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            9 NGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHHHhcC
Confidence            49999999999999998753

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.10  E-value=0.13  Score=51.78  Aligned_cols=20  Identities=45%  Similarity=0.620  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      .||+|+|||||.+.++..+.
T Consensus        73 ~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           73 TGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             EECTTSSHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            39999999999999988653

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=94.08  E-value=0.017  Score=54.88  Aligned_cols=20  Identities=50%  Similarity=0.758  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +||||||||||++.|....+
T Consensus         7 ~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            7 SGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHHCT
T ss_pred             ECCCCCCHHHHHHHHHHhCC
Confidence            59999999999999976543

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=94.01  E-value=0.024  Score=60.14  Aligned_cols=18  Identities=39%  Similarity=0.665  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|+||+|||||+|+|+|.
T Consensus        28 VG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           28 VGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             ECCSSSSHHHHHHHHHC-
T ss_pred             ECCCCCCHHHHHHHHHCC
Confidence            599999999999999997

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=93.85  E-value=0.018  Score=57.35  Aligned_cols=19  Identities=47%  Similarity=0.662  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|+|||||||+.++|++.+
T Consensus        54 ~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           54 VGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             ECSTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhc
Confidence            5999999999999999864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=93.78  E-value=0.048  Score=50.75  Aligned_cols=19  Identities=26%  Similarity=0.354  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        26 vG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           26 VGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             ECCTTSCHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999998776643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=93.69  E-value=0.011  Score=61.54  Aligned_cols=22  Identities=32%  Similarity=0.584  Sum_probs=19.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMAS   22 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~   22 (607)
                      +|++|+|||||++.|+|...+.
T Consensus        62 ~G~~g~GKSTl~~~l~~~~~~~   83 (341)
T 2p67_A           62 TGTPGAGKSTFLEAFGMLLIRE   83 (341)
T ss_dssp             EECTTSCHHHHHHHHHHHHHHT
T ss_pred             EcCCCCCHHHHHHHHHHHHHhc
Confidence            5999999999999999987543

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=93.65  E-value=0.2  Score=51.20  Aligned_cols=68  Identities=15%  Similarity=0.053  Sum_probs=40.3

Q ss_pred             HHHHHHHHhh---CCCeEEEeCCCCCCC--------HH----HHHHHHHHHHHHH-hcCCeEEEEecCCh----------
Q 007344          117 RLSLACELIA---SPSVIYADEPTTGLD--------AF----QAEKVMEALRQLA-QDGHTVICSIHQPR----------  170 (607)
Q Consensus       117 RvsIa~aL~~---~p~illLDEPtsGLD--------~~----~~~~i~~~L~~la-~~g~tvi~~~H~p~----------  170 (607)
                      -+..+..++.   +++++++|.-++-..        ..    ...+++..|++++ +.|.+||++.|-..          
T Consensus       191 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~  270 (322)
T 2i1q_A          191 FAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAE  270 (322)
T ss_dssp             HHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CC
T ss_pred             HHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCc
Confidence            3444555553   589999999876321        11    1245666677766 45778887766311          


Q ss_pred             -----hHHHhhhcceeeec
Q 007344          171 -----GSVYFKFDDIVLLT  184 (607)
Q Consensus       171 -----~~i~~~~D~v~lL~  184 (607)
                           ..+...+|.++.|+
T Consensus       271 ~~~g~~~~~~~~d~~i~l~  289 (322)
T 2i1q_A          271 QAIGGHIVGHAATFRFFVR  289 (322)
T ss_dssp             EESSHHHHHHHCSEEEEEE
T ss_pred             CCCCcHHHHhcCcEEEEEE
Confidence                 12445567777775

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=93.57  E-value=0.024  Score=52.38  Aligned_cols=19  Identities=53%  Similarity=0.700  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+.+.|+..+
T Consensus        10 ~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A           10 IGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHc
Confidence            4999999999999999754

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=93.46  E-value=0.025  Score=51.41  Aligned_cols=15  Identities=40%  Similarity=0.698  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVL   15 (607)
Q Consensus         1 lGpsGsGKSTLL~~L   15 (607)
                      .|++||||||+.+.|
T Consensus         7 ~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            7 TGMPGSGKSEFAKLL   21 (179)
T ss_dssp             ECCTTSCHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            499999999999999

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=93.41  E-value=0.024  Score=56.29  Aligned_cols=19  Identities=37%  Similarity=0.525  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||||||||||.+.|++..
T Consensus         7 ~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            7 YGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHhcC
Confidence            5999999999999999864

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=93.38  E-value=0.027  Score=51.77  Aligned_cols=17  Identities=35%  Similarity=0.534  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAG   17 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG   17 (607)
                      .|++||||||+.+.|+.
T Consensus         8 ~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            8 IGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHh
Confidence            49999999999999987

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=93.37  E-value=0.027  Score=52.32  Aligned_cols=18  Identities=44%  Similarity=0.732  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++||||||+.+.|+..
T Consensus        10 ~G~~GsGKST~~~~La~~   27 (186)
T 3cm0_A           10 LGPPGAGKGTQASRLAQE   27 (186)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999864

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=93.31  E-value=0.028  Score=52.81  Aligned_cols=19  Identities=32%  Similarity=0.625  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus         6 ~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            6 FGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             ECCCccCHHHHHHHHHHhc
Confidence            4999999999999999864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=93.23  E-value=0.018  Score=57.06  Aligned_cols=31  Identities=26%  Similarity=0.473  Sum_probs=23.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS   38 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~   38 (607)
                      +|+|||||||+.+.|+..+.       .+.+.+++..+
T Consensus        38 ~G~~GsGKSTla~~L~~~l~-------~~~~~~~~D~~   68 (253)
T 2p5t_B           38 GGQSGAGKTTIHRIKQKEFQ-------GNIVIIDGDSF   68 (253)
T ss_dssp             ESCGGGTTHHHHHHHHHHTT-------TCCEEECGGGG
T ss_pred             ECCCCCCHHHHHHHHHHhcC-------CCcEEEecHHH
Confidence            49999999999999998753       24466676543

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=93.21  E-value=0.15  Score=54.84  Aligned_cols=58  Identities=14%  Similarity=0.041  Sum_probs=35.8

Q ss_pred             CCCHHHHHHHHHHHHHh--hCCC--eEEEeCCCC---CC---C-HHHHHHHHHHHHHHHh-cCCeEEEEecC
Q 007344          109 GISGGEKKRLSLACELI--ASPS--VIYADEPTT---GL---D-AFQAEKVMEALRQLAQ-DGHTVICSIHQ  168 (607)
Q Consensus       109 ~LSGGerqRvsIa~aL~--~~p~--illLDEPts---GL---D-~~~~~~i~~~L~~la~-~g~tvi~~~H~  168 (607)
                      ++|-.+-+.  .++.+.  .+++  ++++|--+.   +-   + .....++.+.|+.+++ .|.+||+++|-
T Consensus       290 ~~s~~~i~~--~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql  359 (444)
T 3bgw_A          290 GQSVNYIWS--KTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL  359 (444)
T ss_dssp             SCBHHHHHH--HHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             CCCHHHHHH--HHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence            456555332  334443  3789  999996542   11   1 1233467778888875 58899999884

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=93.07  E-value=0.036  Score=51.43  Aligned_cols=19  Identities=32%  Similarity=0.407  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus         9 ~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            9 TGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4999999999999998754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=93.00  E-value=0.034  Score=54.82  Aligned_cols=19  Identities=47%  Similarity=0.900  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||||+|||||+++|++..
T Consensus        51 ~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           51 VGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHHc
Confidence            4999999999999999865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=92.86  E-value=0.035  Score=51.54  Aligned_cols=19  Identities=37%  Similarity=0.459  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+.+.|+..+
T Consensus        11 ~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A           11 IGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999998754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=92.85  E-value=0.036  Score=51.40  Aligned_cols=18  Identities=50%  Similarity=0.625  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      .|++||||||+.+.|+..
T Consensus        17 ~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           17 TGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            499999999999999854

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=92.83  E-value=0.048  Score=51.40  Aligned_cols=18  Identities=44%  Similarity=0.728  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+.
T Consensus        31 vG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           31 LGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             EEETTSSHHHHHHHHSCC
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999874

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=92.81  E-value=0.031  Score=55.86  Aligned_cols=47  Identities=15%  Similarity=0.064  Sum_probs=32.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEecCChhHHHhhhcceeee
Q 007344          136 PTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLL  183 (607)
Q Consensus       136 PtsGLD~~~~~~i~~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL  183 (607)
                      |||+++.....++.+.+.+...+ +.+..+..|.. .++...++++.-.
T Consensus       144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~-~~~e~~~~~l~~~  191 (271)
T 3k53_A          144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYD-EDIEREIKHISEL  191 (271)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCC-HHHHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCC-HHHHHHHHHHHHH
Confidence            88998888888888888887643 34445566663 4566666665544

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=92.73  E-value=0.065  Score=48.74  Aligned_cols=19  Identities=26%  Similarity=0.410  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        15 ~G~~~~GKssli~~l~~~~   33 (181)
T 2fn4_A           15 VGGGGVGKSALTIQFIQSY   33 (181)
T ss_dssp             EECTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHHhCc
Confidence            5999999999999999863

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=92.67  E-value=0.03  Score=59.12  Aligned_cols=45  Identities=11%  Similarity=0.098  Sum_probs=37.6

Q ss_pred             CCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCeEEEEecCChh
Q 007344          127 SPSVIYADEPTTGLD---AFQAEKVMEALRQLAQDGHTVICSIHQPRG  171 (607)
Q Consensus       127 ~p~illLDEPtsGLD---~~~~~~i~~~L~~la~~g~tvi~~~H~p~~  171 (607)
                      .|.++++||-=.=++   +..+..+.+.+++.++.|..++++||.|..
T Consensus       262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d  309 (392)
T 4ag6_A          262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID  309 (392)
T ss_dssp             TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred             ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence            578999999877774   667778888888888889999999999864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=92.64  E-value=0.054  Score=50.61  Aligned_cols=18  Identities=44%  Similarity=0.733  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+.
T Consensus        29 vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           29 LGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             EESTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999984

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=92.62  E-value=0.034  Score=51.62  Aligned_cols=20  Identities=35%  Similarity=0.446  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      .|++||||||+.+.|+..+.
T Consensus         7 ~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            7 TGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EECTTSCHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            49999999999999998653

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=92.62  E-value=0.038  Score=51.37  Aligned_cols=19  Identities=47%  Similarity=0.749  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.+..
T Consensus        54 vG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           54 AGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             ECCTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999864

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=92.53  E-value=0.039  Score=49.58  Aligned_cols=19  Identities=16%  Similarity=0.448  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        11 ~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A           11 VGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHCC
T ss_pred             ECcCCCCHHHHHHHHHcCC
Confidence            5999999999999999854

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=92.53  E-value=0.035  Score=51.73  Aligned_cols=19  Identities=47%  Similarity=0.581  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus        11 ~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A           11 TGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             EESTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHc
Confidence            4999999999999998643

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.42  E-value=0.046  Score=49.19  Aligned_cols=19  Identities=26%  Similarity=0.471  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus         9 ~G~~~~GKssli~~l~~~~   27 (172)
T 2erx_A            9 FGAGGVGKSSLVLRFVKGT   27 (172)
T ss_dssp             ECCTTSSHHHHHHHHHTCC
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999999853

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=92.41  E-value=0.038  Score=54.05  Aligned_cols=21  Identities=48%  Similarity=0.752  Sum_probs=18.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      .|++||||||+++.|+..+..
T Consensus        32 ~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           32 EGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             ECCTTSCHHHHHHHHHHHHTT
T ss_pred             EcCCCCCHHHHHHHHHHHHhc
Confidence            499999999999999998753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=92.39  E-value=0.044  Score=53.91  Aligned_cols=19  Identities=42%  Similarity=0.686  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|||||||||+.+.|+..+
T Consensus        15 ~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A           15 DGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999999653

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=92.35  E-value=0.047  Score=52.31  Aligned_cols=17  Identities=47%  Similarity=0.671  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAG   17 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG   17 (607)
                      .|++||||||+.+.|+.
T Consensus        10 ~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A           10 TGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999987

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=92.35  E-value=0.043  Score=51.28  Aligned_cols=21  Identities=33%  Similarity=0.419  Sum_probs=18.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      +|++|||||||++.|++.++.
T Consensus        10 ~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A           10 VGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhhHh
Confidence            499999999999999987643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=92.30  E-value=0.049  Score=49.36  Aligned_cols=19  Identities=42%  Similarity=0.788  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.|..
T Consensus        10 ~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A           10 LGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             ECCTTSSHHHHHHHHHCC-
T ss_pred             ECCCCccHHHHHHHHhcCC
Confidence            6999999999999999864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=92.26  E-value=0.045  Score=48.86  Aligned_cols=19  Identities=32%  Similarity=0.504  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus         7 ~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            7 VGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             ECCTTSSHHHHHHHHHHCC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999864

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=92.21  E-value=0.16  Score=55.23  Aligned_cols=72  Identities=14%  Similarity=0.235  Sum_probs=52.4

Q ss_pred             cCCCCCHHHHHHHHHH--HHHhh---------------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 007344          106 KVRGISGGEKKRLSLA--CELIA---------------SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ  168 (607)
Q Consensus       106 ~~~~LSGGerqRvsIa--~aL~~---------------~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~  168 (607)
                      ..++.||||+|-.-+|  .+++.               .-.++++||. +-+|...+...+++++++   |.-+|+++-.
T Consensus       376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~  451 (483)
T 3euj_A          376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE  451 (483)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS
T ss_pred             ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc
Confidence            3678999999964443  33332               1247999999 999999999999999977   6666666643


Q ss_pred             ChhHHHhhhcceeeec
Q 007344          169 PRGSVYFKFDDIVLLT  184 (607)
Q Consensus       169 p~~~i~~~~D~v~lL~  184 (607)
                         .+....|.++.+-
T Consensus       452 ---~i~p~v~~~~~~~  464 (483)
T 3euj_A          452 ---NISPERGTTYKLV  464 (483)
T ss_dssp             ---SCCCSSSEEEECC
T ss_pred             ---hhhhccCceEEEE
Confidence               3445567777764

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=92.20  E-value=0.048  Score=50.97  Aligned_cols=18  Identities=33%  Similarity=0.739  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++||||||+.+.|+..
T Consensus        16 ~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           16 TGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999999975

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.18  E-value=0.046  Score=48.92  Aligned_cols=19  Identities=26%  Similarity=0.354  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        10 ~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A           10 VGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHhCc
Confidence            5999999999999999754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=92.15  E-value=0.039  Score=49.19  Aligned_cols=19  Identities=32%  Similarity=0.454  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus         9 ~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            9 VGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EESTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHHhCc
Confidence            5999999999999998864

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=92.12  E-value=0.039  Score=49.68  Aligned_cols=20  Identities=30%  Similarity=0.594  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +|++|+|||||++.+.|...
T Consensus         8 vG~~~~GKSsli~~l~~~~~   27 (166)
T 3q72_A            8 LGAPGVGKSALARIFGGVED   27 (166)
T ss_dssp             EESTTSSHHHHHHHHCCC--
T ss_pred             ECCCCCCHHHHHHHHcCccc
Confidence            59999999999999988643

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=92.12  E-value=0.048  Score=48.73  Aligned_cols=19  Identities=26%  Similarity=0.447  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus         9 ~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            9 LGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999998754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=92.11  E-value=0.053  Score=48.93  Aligned_cols=19  Identities=42%  Similarity=0.674  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus         8 vG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            8 VGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             ECSTTSSHHHHHHHHHCC-
T ss_pred             ECCCCCCHHHHHHHHHhcc
Confidence            5999999999999998754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=92.00  E-value=0.035  Score=59.52  Aligned_cols=33  Identities=27%  Similarity=0.177  Sum_probs=26.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS   38 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~   38 (607)
                      +|+|||||||++..|++.+.+.     .|+|.+.+.+.
T Consensus       104 ~G~~GsGKTT~~~~LA~~l~~~-----g~~Vllvd~D~  136 (425)
T 2ffh_A          104 VGLQGSGKTTTAAKLALYYKGK-----GRRPLLVAADT  136 (425)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHTT-----TCCEEEEECCS
T ss_pred             ECCCCCCHHHHHHHHHHHHHHc-----CCeEEEeeccc
Confidence            4999999999999999998765     56777765543

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=91.97  E-value=0.044  Score=55.47  Aligned_cols=19  Identities=37%  Similarity=0.506  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|||||||||+.+.|+...
T Consensus        39 ~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           39 GGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             ECCTTSCTHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=91.97  E-value=0.051  Score=48.89  Aligned_cols=19  Identities=21%  Similarity=0.504  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        12 ~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A           12 LGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             ECCTTSSHHHHHHHHHHSC
T ss_pred             ECcCCCCHHHHHHHHHcCC
Confidence            5999999999999999875

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=91.96  E-value=0.05  Score=49.53  Aligned_cols=19  Identities=42%  Similarity=0.630  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.+..
T Consensus        15 ~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           15 IGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             ECCTTSCHHHHHHHHCSCC
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=91.91  E-value=0.027  Score=53.51  Aligned_cols=20  Identities=40%  Similarity=0.665  Sum_probs=17.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      .|++||||||+++.|+..+.
T Consensus         6 ~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            6 EGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEHHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHHH
Confidence            49999999999999998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=91.88  E-value=0.053  Score=48.88  Aligned_cols=19  Identities=26%  Similarity=0.338  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        12 ~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A           12 LGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             ECCTTSCHHHHHHHHHHCC
T ss_pred             ECcCCCCHHHHHHHHHcCC
Confidence            5999999999999999764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.86  E-value=0.083  Score=47.36  Aligned_cols=19  Identities=16%  Similarity=0.371  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus         9 ~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            9 LGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999765

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=91.78  E-value=0.11  Score=46.48  Aligned_cols=19  Identities=26%  Similarity=0.520  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus         9 ~G~~~~GKssli~~l~~~~   27 (167)
T 1c1y_A            9 LGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             ECSTTSSHHHHHHHHHHCC
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999998754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=91.73  E-value=0.11  Score=48.37  Aligned_cols=19  Identities=26%  Similarity=0.354  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        20 ~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           20 VGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHhCC
Confidence            5999999999999998754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=91.73  E-value=0.056  Score=49.15  Aligned_cols=19  Identities=32%  Similarity=0.592  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        13 ~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A           13 LGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             ECCTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999998754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=91.71  E-value=0.056  Score=49.21  Aligned_cols=19  Identities=37%  Similarity=0.625  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        14 ~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           14 LGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             ECCTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHhCc
Confidence            5999999999999998854

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=91.71  E-value=0.059  Score=51.43  Aligned_cols=19  Identities=32%  Similarity=0.478  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus         6 ~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            6 MGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999997643

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=91.70  E-value=0.061  Score=48.92  Aligned_cols=19  Identities=42%  Similarity=0.574  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        14 ~G~~~~GKssl~~~l~~~~   32 (178)
T 2lkc_A           14 MGHVDHGKTTLLDAIRHSK   32 (178)
T ss_dssp             ESCTTTTHHHHHHHHHTTC
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            5999999999999999854

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=91.67  E-value=0.061  Score=54.06  Aligned_cols=19  Identities=42%  Similarity=0.786  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||+|.|+|..
T Consensus         9 vG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            9 IGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             ECCTTSSHHHHHHHHHCCC
T ss_pred             ECCCCCCHHHHHHHHHCCC
Confidence            5999999999999999964

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=91.58  E-value=0.063  Score=49.06  Aligned_cols=19  Identities=42%  Similarity=0.531  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus         8 ~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            8 VGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             ESCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998753

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=91.51  E-value=0.052  Score=50.39  Aligned_cols=19  Identities=32%  Similarity=0.527  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.+..
T Consensus        29 ~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           29 AGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTC-
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999863

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=91.48  E-value=0.074  Score=50.18  Aligned_cols=20  Identities=30%  Similarity=0.425  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      .|++||||||+.+.|+..+.
T Consensus        10 ~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A           10 EGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             ECCTTSSHHHHHHHHHHHHT
T ss_pred             EcCCCCCHHHHHHHHHHHHh
Confidence            49999999999999998654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=91.48  E-value=0.051  Score=48.88  Aligned_cols=19  Identities=37%  Similarity=0.543  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus         9 ~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            9 IGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EESTTSSHHHHHHHHHHCC
T ss_pred             ECcCCCCHHHHHHHHHhCC
Confidence            5999999999999999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=91.47  E-value=0.05  Score=50.37  Aligned_cols=18  Identities=50%  Similarity=0.735  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+.
T Consensus        22 vG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           22 LGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EESTTSSHHHHHHHHCCS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999885

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=91.46  E-value=0.21  Score=51.54  Aligned_cols=18  Identities=39%  Similarity=0.582  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      .||+|+|||||...++..
T Consensus       129 ~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          129 TGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             ECSCSSSHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHh
Confidence            399999999999999853

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=91.45  E-value=0.059  Score=52.49  Aligned_cols=19  Identities=37%  Similarity=0.705  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+.+.|++.+
T Consensus        22 ~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           22 DGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             ECSSCSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHc
Confidence            5999999999999999853

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=91.41  E-value=0.054  Score=50.02  Aligned_cols=19  Identities=42%  Similarity=0.616  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        29 ~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           29 VGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHHcCc
Confidence            5999999999999999864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=91.40  E-value=0.055  Score=50.79  Aligned_cols=18  Identities=39%  Similarity=0.540  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      .|++||||||+.+.|+..
T Consensus        14 ~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A           14 TGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EECTTSCHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHC
Confidence            489999999999999974

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=91.38  E-value=0.077  Score=49.90  Aligned_cols=19  Identities=32%  Similarity=0.274  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus        10 ~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A           10 EGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             ECCTTSSHHHHHHHHHHTS
T ss_pred             EcCCCCCHHHHHHHHHHHH
Confidence            4999999999999999875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=91.33  E-value=0.068  Score=51.04  Aligned_cols=19  Identities=32%  Similarity=0.429  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+.+.|+..+
T Consensus         6 ~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            6 MGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             ECSTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998643

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=91.33  E-value=0.063  Score=56.32  Aligned_cols=16  Identities=31%  Similarity=0.758  Sum_probs=14.8

Q ss_pred             CCCCCCcHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLA   16 (607)
Q Consensus         1 lGpsGsGKSTLL~~La   16 (607)
                      .|||||||||+|.+|.
T Consensus        31 ~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           31 IGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999999986

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.32  E-value=0.067  Score=55.13  Aligned_cols=21  Identities=38%  Similarity=0.729  Sum_probs=18.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      .||+|+||||+++++++.+.+
T Consensus        52 ~Gp~G~GKTtla~~la~~l~~   72 (340)
T 1sxj_C           52 YGPPGTGKTSTIVALAREIYG   72 (340)
T ss_dssp             ECSSSSSHHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHHcC
Confidence            499999999999999997644

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=91.32  E-value=0.093  Score=55.04  Aligned_cols=19  Identities=37%  Similarity=0.497  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||+|.|+|..
T Consensus         8 VG~pnvGKSTL~n~Lt~~~   26 (363)
T 1jal_A            8 VGLPNVGKSTLFNALTKAG   26 (363)
T ss_dssp             ECCTTSSHHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHCCC
Confidence            5999999999999999943

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=91.30  E-value=0.065  Score=48.07  Aligned_cols=19  Identities=26%  Similarity=0.398  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        12 ~G~~~~GKssli~~l~~~~   30 (170)
T 1r2q_A           12 LGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999999753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=91.28  E-value=0.13  Score=47.20  Aligned_cols=19  Identities=32%  Similarity=0.455  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.+..
T Consensus        10 ~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A           10 VGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHHhCC
Confidence            5999999999999999864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=91.28  E-value=0.13  Score=46.89  Aligned_cols=18  Identities=22%  Similarity=0.316  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+.
T Consensus        12 ~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A           12 LGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EESTTSSHHHHHHHHHHS
T ss_pred             ECcCCCCHHHHHHHHHcC
Confidence            599999999999999854

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=91.23  E-value=0.075  Score=48.34  Aligned_cols=19  Identities=37%  Similarity=0.573  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        12 ~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A           12 LGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             ECCTTSSHHHHHHHHHGGG
T ss_pred             ECcCCCCHHHHHHHHHhCc
Confidence            5999999999999999854

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=91.22  E-value=0.028  Score=57.39  Aligned_cols=32  Identities=28%  Similarity=0.241  Sum_probs=24.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCee
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP   37 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~   37 (607)
                      +|++|+||||++..|++.+...     .|+|.+.+.+
T Consensus       104 ~G~~G~GKTT~~~~la~~~~~~-----g~~v~l~~~D  135 (297)
T 1j8m_F          104 VGVQGTGKTTTAGKLAYFYKKK-----GFKVGLVGAD  135 (297)
T ss_dssp             ECSSCSSTTHHHHHHHHHHHHT-----TCCEEEEECC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEecC
Confidence            4999999999999999987654     4566654433

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=91.22  E-value=0.067  Score=49.48  Aligned_cols=19  Identities=26%  Similarity=0.457  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.+..
T Consensus        13 ~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A           13 LGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             ECCTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHhCc
Confidence            5999999999999999864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.21  E-value=0.13  Score=48.59  Aligned_cols=19  Identities=37%  Similarity=0.621  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        32 vG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           32 IGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSS
T ss_pred             ECcCCCCHHHHHHHHHhCC
Confidence            5999999999999988754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=91.20  E-value=0.068  Score=48.20  Aligned_cols=19  Identities=42%  Similarity=0.531  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        13 ~G~~~~GKssl~~~l~~~~   31 (171)
T 1upt_A           13 LGLDGAGKTTILYRLQVGE   31 (171)
T ss_dssp             ECSTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999998753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=91.16  E-value=0.074  Score=49.35  Aligned_cols=18  Identities=28%  Similarity=0.470  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      .|++||||||+.+.|+..
T Consensus         9 ~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            9 LGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999864

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=91.11  E-value=0.061  Score=49.53  Aligned_cols=19  Identities=42%  Similarity=0.604  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus         7 ~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            7 AGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEBTTSSHHHHHHHHHSCC
T ss_pred             ECCCCCCHHHHHHHHhCcC
Confidence            5999999999999999864

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=91.10  E-value=2  Score=46.66  Aligned_cols=66  Identities=21%  Similarity=0.269  Sum_probs=42.8

Q ss_pred             HHHHHHHh--hCCCeEEEeCCCCCC-------CH-HHHHHHHHHHHHHHh-cCCeEEEEecCCh----------------
Q 007344          118 LSLACELI--ASPSVIYADEPTTGL-------DA-FQAEKVMEALRQLAQ-DGHTVICSIHQPR----------------  170 (607)
Q Consensus       118 vsIa~aL~--~~p~illLDEPtsGL-------D~-~~~~~i~~~L~~la~-~g~tvi~~~H~p~----------------  170 (607)
                      +..++.++  .+|+++++|=-+. +       +. ....++++.|+++++ .|.+||+++|-..                
T Consensus       343 ~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~  421 (503)
T 1q57_A          343 LAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSIT  421 (503)
T ss_dssp             HHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSS
T ss_pred             HHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChh
Confidence            34445554  3699999995443 2       21 233457778888874 5889999988542                


Q ss_pred             -----hHHHhhhcceeeec
Q 007344          171 -----GSVYFKFDDIVLLT  184 (607)
Q Consensus       171 -----~~i~~~~D~v~lL~  184 (607)
                           ..+...+|-|+.|.
T Consensus       422 dlr~s~~ie~~aD~vi~l~  440 (503)
T 1q57_A          422 DLRGSGALRQLSDTIIALE  440 (503)
T ss_dssp             SCSSSSHHHHHCSEEEEEE
T ss_pred             hhccchHhhecCcEEEEEE
Confidence                 13455678888884

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=90.96  E-value=0.074  Score=47.66  Aligned_cols=18  Identities=39%  Similarity=0.458  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+.
T Consensus         6 ~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            6 VGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999999864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=90.94  E-value=0.073  Score=48.93  Aligned_cols=19  Identities=37%  Similarity=0.541  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        17 ~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           17 LGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=90.93  E-value=0.083  Score=48.79  Aligned_cols=21  Identities=38%  Similarity=0.447  Sum_probs=18.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      +|++|+|||||++.+.|....
T Consensus        20 vG~~~~GKssL~~~l~~~~~~   40 (198)
T 3t1o_A           20 YGPGLSGKTTNLKWIYSKVPE   40 (198)
T ss_dssp             ECSTTSSHHHHHHHHHHTSCG
T ss_pred             ECCCCCCHHHHHHHHHhhccc
Confidence            599999999999999997643

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=90.92  E-value=0.068  Score=49.84  Aligned_cols=19  Identities=32%  Similarity=0.466  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+.+.|+..+
T Consensus        15 ~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A           15 VGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             EECTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=90.92  E-value=0.082  Score=49.78  Aligned_cols=19  Identities=42%  Similarity=0.637  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus         8 ~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            8 DGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhc
Confidence            4999999999999999854

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=90.83  E-value=0.075  Score=49.36  Aligned_cols=19  Identities=42%  Similarity=0.625  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.+..
T Consensus        31 ~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           31 IGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             ESSTTSSHHHHHHHHHHSC
T ss_pred             ECcCCCCHHHHHHHHhcCC
Confidence            5999999999999999854

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=90.83  E-value=0.068  Score=51.36  Aligned_cols=19  Identities=26%  Similarity=0.391  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+.+.|+..+
T Consensus        11 ~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A           11 SGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             EESTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=90.82  E-value=0.077  Score=48.13  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        21 ~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           21 IGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999999864

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=90.80  E-value=0.077  Score=49.06  Aligned_cols=19  Identities=32%  Similarity=0.454  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|++..
T Consensus        27 vG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           27 VGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             ECSTTSSHHHHHHHHHHSS
T ss_pred             ECcCCCCHHHHHHHHHcCC
Confidence            5999999999999999864

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=90.79  E-value=0.095  Score=47.64  Aligned_cols=19  Identities=37%  Similarity=0.462  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus         6 ~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            6 IGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             ESCTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.77  E-value=0.077  Score=50.40  Aligned_cols=19  Identities=47%  Similarity=0.749  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.+..
T Consensus        18 ~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           18 AGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             ECSTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=90.76  E-value=0.095  Score=48.64  Aligned_cols=19  Identities=47%  Similarity=0.452  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus         6 ~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            6 EGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             ECSTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4999999999999998755

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=90.76  E-value=0.078  Score=48.45  Aligned_cols=19  Identities=26%  Similarity=0.354  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        24 ~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           24 VGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHhhCC
Confidence            5999999999999999754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.73  E-value=0.079  Score=48.26  Aligned_cols=20  Identities=40%  Similarity=0.534  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +|++|+|||||++.+.+...
T Consensus        16 ~G~~~~GKssli~~l~~~~~   35 (180)
T 2g6b_A           16 VGDSGVGKTCLLVRFKDGAF   35 (180)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC
T ss_pred             ECcCCCCHHHHHHHHHhCCC
Confidence            59999999999999988543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=90.61  E-value=0.084  Score=48.13  Aligned_cols=19  Identities=26%  Similarity=0.515  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        18 ~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           18 LGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             ECCTTSCHHHHHHHHHHCC
T ss_pred             ECcCCCCHHHHHHHHHcCC
Confidence            5999999999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.60  E-value=0.17  Score=47.45  Aligned_cols=19  Identities=37%  Similarity=0.573  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.+..
T Consensus        14 ~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           14 IGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EESTTSSHHHHHHHHHHCC
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=90.58  E-value=0.089  Score=48.75  Aligned_cols=19  Identities=47%  Similarity=0.609  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+.+.|+..+
T Consensus         8 ~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            8 VGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHc
Confidence            4999999999999998753

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=90.57  E-value=0.069  Score=53.39  Aligned_cols=19  Identities=47%  Similarity=0.546  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||+|.|.|..
T Consensus        14 vG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           14 VGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EECTTSSHHHHHHHHSSSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999998864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=90.48  E-value=0.073  Score=48.30  Aligned_cols=19  Identities=26%  Similarity=0.417  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        20 ~G~~~~GKssli~~l~~~~   38 (179)
T 2y8e_A           20 LGEQSVGKTSLITRFMYDS   38 (179)
T ss_dssp             EESTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999998753

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=90.47  E-value=0.079  Score=49.51  Aligned_cols=19  Identities=37%  Similarity=0.506  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus        18 ~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           18 IGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             EECTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.46  E-value=0.051  Score=49.79  Aligned_cols=17  Identities=47%  Similarity=0.644  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAG   17 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG   17 (607)
                      +|++|+|||||++.+.+
T Consensus        24 ~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           24 LGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEETTSSHHHHHHHTCC
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            59999999999999985

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=90.43  E-value=0.079  Score=51.15  Aligned_cols=19  Identities=37%  Similarity=0.627  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus        13 ~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A           13 MGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             EECTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHHc
Confidence            4999999999999998643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=90.38  E-value=0.091  Score=48.36  Aligned_cols=19  Identities=37%  Similarity=0.629  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        24 ~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           24 LGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             ECSTTSSHHHHHHHHTTCC
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999865

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=90.28  E-value=0.092  Score=49.65  Aligned_cols=19  Identities=37%  Similarity=0.392  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus        16 ~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A           16 EGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             EESTTSSHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHH
Confidence            4999999999999998754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=90.25  E-value=0.2  Score=46.46  Aligned_cols=19  Identities=26%  Similarity=0.452  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        27 vG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           27 LGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             ECCTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCcHHHHHHHHHhCC
Confidence            6999999999999998754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=90.22  E-value=0.085  Score=52.42  Aligned_cols=19  Identities=42%  Similarity=0.625  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|||||||+|.|+|..
T Consensus         7 vG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            7 IGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EESTTSSHHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHHCCC
Confidence            5999999999999999963

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=90.20  E-value=0.12  Score=47.27  Aligned_cols=19  Identities=37%  Similarity=0.691  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||||++.++...
T Consensus        49 ~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           49 IGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4999999999999998865

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=90.18  E-value=0.57  Score=58.24  Aligned_cols=71  Identities=20%  Similarity=0.170  Sum_probs=45.5

Q ss_pred             HHHHHHHHh--hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHHH---H-hcCCeEEEEecC---------
Q 007344          117 RLSLACELI--ASPSVIYADEPTTGLD-A------------FQAEKVMEALRQL---A-QDGHTVICSIHQ---------  168 (607)
Q Consensus       117 RvsIa~aL~--~~p~illLDEPtsGLD-~------------~~~~~i~~~L~~l---a-~~g~tvi~~~H~---------  168 (607)
                      -...++.++  .+|+++++|+.++=.. .            ...+++.+.+++|   + +.|.+||++.|-         
T Consensus       798 i~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~G  877 (1706)
T 3cmw_A          798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG  877 (1706)
T ss_dssp             HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSS
T ss_pred             HHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccC
Confidence            344444444  4799999999987552 1            1234455555554   4 568899998882         


Q ss_pred             -C-----hhHHHhhhcceeeecCCe
Q 007344          169 -P-----RGSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       169 -p-----~~~i~~~~D~v~lL~~G~  187 (607)
                       |     +..+.+.+|-++.+.+++
T Consensus       878 dp~~p~gs~~Leq~ADvvl~L~R~~  902 (1706)
T 3cmw_A          878 NPETTTGGNALKFYASVRLDIRRIG  902 (1706)
T ss_dssp             CCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred             CccccCCcchhhheeeEEEEEEecc
Confidence             2     224667788888886443

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=90.17  E-value=0.1  Score=53.26  Aligned_cols=19  Identities=47%  Similarity=0.643  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||+|.|.|..
T Consensus        13 vG~~nvGKSTLln~l~g~~   31 (301)
T 1wf3_A           13 VGKPNVGKSTLLNNLLGVK   31 (301)
T ss_dssp             ECSTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            5999999999999999864

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=90.15  E-value=0.23  Score=45.41  Aligned_cols=19  Identities=26%  Similarity=0.471  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        24 ~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           24 VGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHhCC
Confidence            5999999999999999764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=90.14  E-value=0.095  Score=48.54  Aligned_cols=19  Identities=42%  Similarity=0.599  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.+..
T Consensus        22 ~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           22 IGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECcCCCCHHHHHHHHHcCC
Confidence            5999999999999999864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=90.14  E-value=0.1  Score=49.18  Aligned_cols=19  Identities=47%  Similarity=0.714  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus        26 ~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           26 LGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998753

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=90.13  E-value=0.096  Score=49.03  Aligned_cols=19  Identities=42%  Similarity=0.690  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        14 ~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           14 LGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             ECCTTSSHHHHHHHHHHSC
T ss_pred             ECcCCCCHHHHHHHHHcCC
Confidence            5999999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=90.10  E-value=0.1  Score=49.16  Aligned_cols=18  Identities=33%  Similarity=0.503  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      .|++||||||+.+.|+..
T Consensus        21 ~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           21 LGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=90.09  E-value=0.082  Score=48.54  Aligned_cols=19  Identities=32%  Similarity=0.627  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        16 ~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           16 IGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EESTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999998764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=90.08  E-value=0.1  Score=49.97  Aligned_cols=19  Identities=37%  Similarity=0.642  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+.+.|+..+
T Consensus        10 ~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A           10 IGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHc
Confidence            4999999999999998753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=90.08  E-value=0.097  Score=48.47  Aligned_cols=19  Identities=37%  Similarity=0.454  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        28 vG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           28 IGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999999864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=89.98  E-value=0.081  Score=48.78  Aligned_cols=19  Identities=42%  Similarity=0.587  Sum_probs=12.7

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus        11 ~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A           11 NGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             ECCC----CHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHhc
Confidence            4999999999999998653

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=89.96  E-value=0.11  Score=50.23  Aligned_cols=18  Identities=44%  Similarity=0.728  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      .|++||||||+.+.|+-.
T Consensus         6 ~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            6 FGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=89.95  E-value=0.082  Score=49.68  Aligned_cols=18  Identities=44%  Similarity=0.741  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.++|.
T Consensus        29 vG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           29 VGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             ECSTTSSHHHHHHHTCCE
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            699999999999999864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=89.89  E-value=0.11  Score=48.53  Aligned_cols=19  Identities=37%  Similarity=0.454  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        14 ~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           14 IGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             ECSTTSSHHHHHHHHHTCC
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=89.83  E-value=0.1  Score=47.63  Aligned_cols=19  Identities=32%  Similarity=0.394  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        11 ~G~~~~GKssl~~~l~~~~   29 (186)
T 1mh1_A           11 VGDGAVGKTCLLISYTTNA   29 (186)
T ss_dssp             ECSTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999998643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=89.76  E-value=0.1  Score=48.61  Aligned_cols=19  Identities=32%  Similarity=0.644  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.+..
T Consensus        32 vG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           32 IGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             ECSTTSSHHHHHHHHCC--
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999998754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=89.74  E-value=0.1  Score=54.44  Aligned_cols=20  Identities=35%  Similarity=0.574  Sum_probs=18.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +|++||||||+.++|++.+.
T Consensus        30 ~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           30 VGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             ECCTTSSHHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHHhC
Confidence            59999999999999999753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=89.71  E-value=0.11  Score=48.09  Aligned_cols=19  Identities=32%  Similarity=0.368  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        26 ~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           26 IGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999998753

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=89.69  E-value=0.12  Score=51.38  Aligned_cols=19  Identities=42%  Similarity=0.621  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||+|.|+|..
T Consensus        11 vG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A           11 AGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             ECCTTSSHHHHHHHHHTTC
T ss_pred             ECCCCCCHHHHHHHHHCCC
Confidence            5999999999999999853

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.69  E-value=0.093  Score=48.72  Aligned_cols=19  Identities=26%  Similarity=0.471  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        14 vG~~~~GKSsli~~l~~~~   32 (199)
T 2gf0_A           14 FGAGGVGKSSLVLRFVKGT   32 (199)
T ss_dssp             EECTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCcHHHHHHHHHcCC
Confidence            5999999999999999853

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=89.62  E-value=0.1  Score=51.35  Aligned_cols=19  Identities=26%  Similarity=0.471  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.|..
T Consensus        28 vG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           28 VGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EECTTSCHHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=89.60  E-value=0.094  Score=48.40  Aligned_cols=19  Identities=47%  Similarity=0.649  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        13 ~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A           13 VGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             EESTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999864

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=89.58  E-value=0.11  Score=54.73  Aligned_cols=19  Identities=37%  Similarity=0.524  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||+|.|+|..
T Consensus         7 VG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            7 VGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             ECCSSSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999863

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=89.57  E-value=0.11  Score=49.06  Aligned_cols=19  Identities=32%  Similarity=0.338  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus        15 ~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A           15 EGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             EESTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4899999999999999754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=89.50  E-value=0.1  Score=49.84  Aligned_cols=19  Identities=21%  Similarity=0.351  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus         6 ~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            6 LGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EESTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998743

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=89.48  E-value=0.12  Score=47.86  Aligned_cols=18  Identities=33%  Similarity=0.471  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      .|++||||||+.+.|+..
T Consensus        12 ~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A           12 LGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=89.44  E-value=0.1  Score=48.65  Aligned_cols=19  Identities=21%  Similarity=0.518  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        29 vG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           29 LGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EECTTSSHHHHHHHHHHCC
T ss_pred             ECcCCCCHHHHHHHHhcCC
Confidence            5999999999999999864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=89.43  E-value=0.11  Score=48.12  Aligned_cols=19  Identities=32%  Similarity=0.559  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        27 ~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           27 IGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             ESSTTSSHHHHHHHHHHSC
T ss_pred             ECcCCCCHHHHHHHHhcCC
Confidence            5999999999999999854

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=89.43  E-value=0.24  Score=46.34  Aligned_cols=19  Identities=37%  Similarity=0.531  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        31 vG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           31 VGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHHhCc
Confidence            5999999999999999854

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=89.38  E-value=0.12  Score=49.72  Aligned_cols=18  Identities=22%  Similarity=0.584  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+.
T Consensus        35 vG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           35 SGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             ECSTTSSHHHHHHHHTTT
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999885

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=89.38  E-value=0.12  Score=47.14  Aligned_cols=19  Identities=32%  Similarity=0.419  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        14 ~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D           14 VGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999998753

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=89.37  E-value=0.11  Score=52.59  Aligned_cols=19  Identities=32%  Similarity=0.627  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||+|.|+|..
T Consensus        30 vG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           30 VGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EECSSSSHHHHHHHHHTSC
T ss_pred             EcCCCCCHHHHHHHHHCCC
Confidence            5999999999999999974

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=89.37  E-value=0.13  Score=50.76  Aligned_cols=19  Identities=47%  Similarity=0.882  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||||+++|++..
T Consensus        50 ~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           50 VGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             BCSSCSSHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHHh
Confidence            4999999999999999854

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=89.33  E-value=0.13  Score=51.84  Aligned_cols=18  Identities=33%  Similarity=0.532  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++||||||+.+.|+..
T Consensus         8 ~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            8 IGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            499999999999999863

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=89.29  E-value=0.11  Score=51.97  Aligned_cols=19  Identities=53%  Similarity=0.763  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|||||||+|.|+|..
T Consensus         9 vG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            9 IGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EECTTSSHHHHHHHHHTTC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=89.25  E-value=0.064  Score=51.10  Aligned_cols=19  Identities=47%  Similarity=0.646  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||+|.|.|..
T Consensus        35 ~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           35 AGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             EESCHHHHHHHHHHHTTCS
T ss_pred             EcCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=89.25  E-value=0.13  Score=50.47  Aligned_cols=18  Identities=39%  Similarity=0.444  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      .||+||||||+.+.|+..
T Consensus        35 ~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           35 LGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=89.22  E-value=0.13  Score=46.82  Aligned_cols=19  Identities=42%  Similarity=0.545  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus        13 ~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A           13 IGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             ESCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=89.21  E-value=0.12  Score=47.86  Aligned_cols=19  Identities=37%  Similarity=0.478  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        23 ~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           23 CGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             ECCTTSCHHHHHHHHSCCC
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999854

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=89.20  E-value=0.1  Score=48.91  Aligned_cols=20  Identities=25%  Similarity=0.310  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +|++|+|||||++.+.+...
T Consensus        30 vG~~~~GKSsli~~l~~~~~   49 (201)
T 3oes_A           30 LGYRCVGKTSLAHQFVEGEF   49 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSCC
T ss_pred             ECCCCcCHHHHHHHHHhCCC
Confidence            59999999999999998653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=89.20  E-value=0.1  Score=52.50  Aligned_cols=52  Identities=13%  Similarity=0.047  Sum_probs=32.3

Q ss_pred             HHhhCC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHh----------cCCeEEEEecCChhHHHh
Q 007344          123 ELIASP-SVIYADEPTTGLDAFQAEKVMEALRQLAQ----------DGHTVICSIHQPRGSVYF  175 (607)
Q Consensus       123 aL~~~p-~illLDEPtsGLD~~~~~~i~~~L~~la~----------~g~tvi~~~H~p~~~i~~  175 (607)
                      ++...| .++++||. ..|++.....+++.|.+-.-          .+..+|++++.....+..
T Consensus       114 ~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~  176 (311)
T 4fcw_A          114 AVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILE  176 (311)
T ss_dssp             HHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHT
T ss_pred             HHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHh
Confidence            333344 79999998 56788888888887766321          022366666664444433

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=89.17  E-value=0.12  Score=47.92  Aligned_cols=19  Identities=32%  Similarity=0.396  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        29 vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           29 VGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECcCCCCHHHHHHHHhcCC
Confidence            5999999999999999864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=89.17  E-value=0.12  Score=47.58  Aligned_cols=19  Identities=37%  Similarity=0.606  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        21 ~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           21 IGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999999864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=89.16  E-value=0.12  Score=48.28  Aligned_cols=18  Identities=50%  Similarity=0.877  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.|.
T Consensus        12 vG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A           12 IGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            699999999999999973

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.16  E-value=0.13  Score=48.02  Aligned_cols=19  Identities=26%  Similarity=0.466  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        34 ~G~~~vGKSsli~~l~~~~   52 (196)
T 2atv_A           34 FGRAGVGKSALVVRFLTKR   52 (196)
T ss_dssp             ECCTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHhCC
Confidence            5999999999999999864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=89.13  E-value=0.13  Score=47.76  Aligned_cols=19  Identities=47%  Similarity=0.581  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        28 ~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           28 VGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999999753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=89.13  E-value=0.22  Score=51.94  Aligned_cols=123  Identities=17%  Similarity=0.181  Sum_probs=64.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccc----eEEEEC----CeeCCC--c-cceEEEEccCCCCCCCCCHHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLS----GLLEVN----GKPSSN--K-AYKFAYVRQEDLFFSQLTVRETLSLAAE   69 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~----G~I~~~----G~~~~~--~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~   69 (607)
                      +||||||||||+|+|+|+++++     +    |+|.++    |.+...  . ...+++++|+..++. .|+.||+.+.. 
T Consensus       176 vG~nGsGKSTLlk~L~gl~~~~-----~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~-~t~~~nl~~~~-  248 (365)
T 1lw7_A          176 LGGESSGKSVLVNKLAAVFNTT-----SAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYA-VRHSHKIAFID-  248 (365)
T ss_dssp             ECCTTSHHHHHHHHHHHHTTCE-----EECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHH-HHHCSSEEEES-
T ss_pred             ECCCCCCHHHHHHHHHHHhCCC-----cchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHH-HhccCCEEEEe-
Confidence            5999999999999999998876     5    776653    333211  0 123677776543322 34444432210 


Q ss_pred             ccCCCCCCHHHH-----------HHHHHHHHHHcCCCc-cccc---cccCCcCCCCCHHHHHHHHHHHHH---hh--CCC
Q 007344           70 LQLPEILSVEER-----------DEYVNSLLFKLGLVS-CADS---NVGDAKVRGISGGEKKRLSLACEL---IA--SPS  129 (607)
Q Consensus        70 ~~~~~~~~~~~~-----------~~~v~~~l~~lgL~~-~~d~---~vg~~~~~~LSGGerqRvsIa~aL---~~--~p~  129 (607)
                            ......           ...+...+...+..- ..|.   +.. .....+|+||+||..|+++|   ..  +++
T Consensus       249 ------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~-~~g~~~sld~~~r~~l~~~l~~l~~~~~~~  321 (365)
T 1lw7_A          249 ------TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWV-DDGLRSLGSQKQRQQFQQLLKKLLDKYKVP  321 (365)
T ss_dssp             ------SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC------------CCSHHHHHHHHHHHHHGGGCC
T ss_pred             ------CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcc-cCCCcCCccHHHHHHHHHHHHHHHHHcCCC
Confidence                  010000           111223332222210 0010   110 01134899999999999999   77  899


Q ss_pred             eEEEeCCC
Q 007344          130 VIYADEPT  137 (607)
Q Consensus       130 illLDEPt  137 (607)
                      ++++|||+
T Consensus       322 ililde~~  329 (365)
T 1lw7_A          322 YIEIESPS  329 (365)
T ss_dssp             CEEEECSS
T ss_pred             EEEeCCCC
Confidence            99999997

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.11  E-value=0.12  Score=47.75  Aligned_cols=18  Identities=33%  Similarity=0.499  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+.
T Consensus        22 ~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           22 VGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EESTTSSHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999964

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=89.09  E-value=0.14  Score=48.49  Aligned_cols=19  Identities=42%  Similarity=0.583  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        31 vG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           31 LGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             ESCTTSSHHHHHHHHHCSC
T ss_pred             ECcCCCCHHHHHHHHhcCC
Confidence            5999999999999999854

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=89.09  E-value=0.13  Score=52.34  Aligned_cols=19  Identities=47%  Similarity=0.669  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||+|.|.|..
T Consensus        16 vG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           16 VGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             ECSTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            5999999999999999964

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=89.02  E-value=0.11  Score=49.45  Aligned_cols=19  Identities=42%  Similarity=0.637  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|++..
T Consensus        36 ~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           36 MGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EECTTSCHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHh
Confidence            5999999999999998753

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=88.98  E-value=0.12  Score=48.49  Aligned_cols=19  Identities=32%  Similarity=0.636  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        31 ~G~~~~GKSsLi~~l~~~~   49 (200)
T 2o52_A           31 IGSAGTGKSCLLHQFIENK   49 (200)
T ss_dssp             EESTTSSHHHHHHHHHC--
T ss_pred             ECcCCCCHHHHHHHHHhCC
Confidence            5999999999999998753

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=88.97  E-value=0.16  Score=50.39  Aligned_cols=19  Identities=42%  Similarity=0.517  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus        10 ~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A           10 TGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHH
Confidence            4999999999999999754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=88.95  E-value=0.094  Score=48.60  Aligned_cols=19  Identities=42%  Similarity=0.560  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        27 ~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           27 LGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EECTTSSHHHHHHHTSCGG
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999865

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=88.95  E-value=0.13  Score=48.32  Aligned_cols=19  Identities=37%  Similarity=0.543  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        26 ~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           26 IGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             ECSTTSSHHHHHHHHHHCC
T ss_pred             ECCCCCCHHHHHHHHHhCC
Confidence            5999999999999999754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.94  E-value=0.11  Score=48.19  Aligned_cols=19  Identities=37%  Similarity=0.468  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        29 ~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           29 IGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EESTTSSHHHHHHHHHHHT
T ss_pred             ECCCCcCHHHHHHHHhcCC
Confidence            5999999999999999854

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=88.89  E-value=0.13  Score=48.11  Aligned_cols=19  Identities=26%  Similarity=0.382  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        34 ~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           34 AGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             ESSTTSSHHHHHHHHHHCC
T ss_pred             ECcCCCCHHHHHHHHHhCC
Confidence            5999999999999999864

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=88.88  E-value=0.13  Score=47.99  Aligned_cols=20  Identities=30%  Similarity=0.481  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +|++|+|||||++.+.|...
T Consensus        26 vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           26 MGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             EESTTSSHHHHHHHHHSCCC
T ss_pred             ECCCCCCHHHHHHHHHhcCC
Confidence            59999999999999998654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=88.85  E-value=0.11  Score=47.80  Aligned_cols=18  Identities=33%  Similarity=0.499  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+.
T Consensus        27 ~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           27 VGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEETTSSHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999985

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=88.78  E-value=0.15  Score=47.52  Aligned_cols=19  Identities=26%  Similarity=0.345  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        26 ~G~~~~GKssl~~~l~~~~   44 (201)
T 2q3h_A           26 VGDGAVGKTSLVVSYTTNG   44 (201)
T ss_dssp             ECSTTSSHHHHHHHHHC--
T ss_pred             ECCCCCCHHHHHHHHHhCC
Confidence            5999999999999999754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=88.66  E-value=0.13  Score=46.87  Aligned_cols=20  Identities=35%  Similarity=0.627  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      .||+|+|||||++.++....
T Consensus        49 ~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           49 LGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             ESCGGGCHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            49999999999999988653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=88.60  E-value=0.11  Score=47.28  Aligned_cols=19  Identities=26%  Similarity=0.464  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        13 vG~~~vGKTsli~~l~~~~   31 (178)
T 2iwr_A           13 LGDARSGKSSLIHRFLTGS   31 (178)
T ss_dssp             ECCGGGCHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHhCC
Confidence            5999999999999998753

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=88.43  E-value=0.18  Score=47.72  Aligned_cols=43  Identities=14%  Similarity=0.213  Sum_probs=29.5

Q ss_pred             hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCCh
Q 007344          126 ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR  170 (607)
Q Consensus       126 ~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~  170 (607)
                      .+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~  167 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ  167 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence            3578999999765 7777776666665432 23557888887754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=88.39  E-value=0.15  Score=48.16  Aligned_cols=19  Identities=37%  Similarity=0.356  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        13 vG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B           13 VGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999998754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.35  E-value=0.13  Score=48.51  Aligned_cols=19  Identities=37%  Similarity=0.510  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        31 vG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           31 VGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EECTTSSHHHHHHHHHHSS
T ss_pred             ECcCCCCHHHHHHHHhcCC
Confidence            5999999999999999854

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=88.32  E-value=0.13  Score=51.46  Aligned_cols=19  Identities=26%  Similarity=0.559  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||+|.|.|..
T Consensus        32 vG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           32 VGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEBTTSCHHHHHHHHHTSC
T ss_pred             EeCCCCCHHHHHHHHHCCC
Confidence            5999999999999999975

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=88.29  E-value=0.33  Score=46.33  Aligned_cols=71  Identities=18%  Similarity=0.113  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHh--hCCCeEEEeCCCC--CCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCC
Q 007344          115 KKRLSLACELI--ASPSVIYADEPTT--GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEG  186 (607)
Q Consensus       115 rqRvsIa~aL~--~~p~illLDEPts--GLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G  186 (607)
                      +..+.-++..+  .+.++++|||.+.  .++-....++++.|.+ +-++..||+|...+..++.+.+|-|.-|..-
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v  180 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRPV  180 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence            44555666667  5679999999976  2333444567777754 2346899999999999999999999988653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=88.23  E-value=0.16  Score=50.65  Aligned_cols=20  Identities=35%  Similarity=0.650  Sum_probs=18.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +|.+|+|||||+|.|.|...
T Consensus       105 vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          105 VGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             EESTTSSHHHHHHHHHTTCC
T ss_pred             eCCCCCCHHHHHHHHhcccc
Confidence            59999999999999999754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=88.16  E-value=0.15  Score=50.79  Aligned_cols=19  Identities=37%  Similarity=0.711  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||+|.|.|..
T Consensus        45 vG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           45 MGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EESTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=88.14  E-value=0.17  Score=47.97  Aligned_cols=18  Identities=33%  Similarity=0.654  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      .|++||||||+.+.|+..
T Consensus        18 tG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           18 TGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            499999999999999864

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=88.09  E-value=0.15  Score=48.41  Aligned_cols=19  Identities=47%  Similarity=0.700  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        40 vG~~~vGKSsli~~l~~~~   58 (214)
T 2j1l_A           40 VGDGGCGKTSLLMVFADGA   58 (214)
T ss_dssp             EECTTSSHHHHHHHHHC--
T ss_pred             ECcCCCCHHHHHHHHHcCC
Confidence            5999999999999999753

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=88.02  E-value=0.11  Score=47.62  Aligned_cols=19  Identities=37%  Similarity=0.539  Sum_probs=5.5

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        14 ~G~~~~GKssl~~~l~~~~   32 (183)
T 2fu5_C           14 IGDSGVGKTCVLFRFSEDA   32 (183)
T ss_dssp             ECCCCC-------------
T ss_pred             ECCCCCCHHHHHHHHHhCC
Confidence            5999999999999998653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=87.92  E-value=0.16  Score=48.78  Aligned_cols=19  Identities=32%  Similarity=0.539  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+.+.|+..+
T Consensus        11 ~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A           11 IGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             EECTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=87.91  E-value=0.14  Score=48.53  Aligned_cols=19  Identities=47%  Similarity=0.649  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        34 vG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           34 VGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EESTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=87.89  E-value=0.2  Score=49.23  Aligned_cols=19  Identities=26%  Similarity=0.408  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|++||||||+.+.|+..+
T Consensus        28 ~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           28 SGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             ECSTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=87.87  E-value=0.18  Score=48.83  Aligned_cols=19  Identities=42%  Similarity=0.683  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+.+.|+..+
T Consensus        22 ~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           22 LGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998753

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=87.85  E-value=0.16  Score=50.31  Aligned_cols=19  Identities=37%  Similarity=0.716  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.|..
T Consensus        42 vG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           42 LGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EECTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999965

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=87.78  E-value=0.11  Score=48.59  Aligned_cols=18  Identities=22%  Similarity=0.600  Sum_probs=0.7

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+.
T Consensus        26 ~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           26 VGEATVGKSALISMFTSK   43 (208)
T ss_dssp             C-----------------
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            699999999999999876

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=87.61  E-value=0.19  Score=48.21  Aligned_cols=19  Identities=42%  Similarity=0.653  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+||||+|..+.|+..+
T Consensus         6 ~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            6 LGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5999999999999999743

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=87.55  E-value=0.15  Score=47.57  Aligned_cols=18  Identities=39%  Similarity=0.458  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+.
T Consensus        35 ~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           35 VGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             EESTTSSHHHHHHHHCSS
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999999764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=87.20  E-value=0.21  Score=51.04  Aligned_cols=43  Identities=9%  Similarity=0.031  Sum_probs=31.5

Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChh
Q 007344          127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG  171 (607)
Q Consensus       127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~  171 (607)
                      +++++++|| ...+++.....+.+.+.+... ...+|++++++..
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~  175 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTR  175 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGG
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhh
Confidence            567999999 788999888888887776533 3356667776643

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=87.15  E-value=0.11  Score=52.62  Aligned_cols=18  Identities=28%  Similarity=0.543  Sum_probs=13.2

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      ||+||||||+.+.|+..+
T Consensus        12 G~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A           12 GSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             SCC---CCTHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999998743

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=86.99  E-value=0.18  Score=46.77  Aligned_cols=19  Identities=37%  Similarity=0.466  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        24 ~G~~~~GKssli~~l~~~~   42 (194)
T 2atx_A           24 VGDGAVGKTCLLMSYANDA   42 (194)
T ss_dssp             EECTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999763

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=86.92  E-value=0.81  Score=52.47  Aligned_cols=19  Identities=47%  Similarity=0.844  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||+|.++|+...
T Consensus       527 ~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          527 LGPTGVGKTELARALAESI  545 (758)
T ss_dssp             ESCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999999865

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=86.86  E-value=1  Score=56.81  Aligned_cols=71  Identities=18%  Similarity=0.119  Sum_probs=46.3

Q ss_pred             HHHHHHHHh--hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHHH---H-hcCCeEEEEecCChh------
Q 007344          117 RLSLACELI--ASPSVIYADEPTTGLD-A------------FQAEKVMEALRQL---A-QDGHTVICSIHQPRG------  171 (607)
Q Consensus       117 RvsIa~aL~--~~p~illLDEPtsGLD-~------------~~~~~i~~~L~~l---a-~~g~tvi~~~H~p~~------  171 (607)
                      -+.+++.++  .+|+++++|.-++=.. +            ..+..+.+.|++|   + +.|.+||++.|--..      
T Consensus       449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g  528 (2050)
T 3cmu_A          449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG  528 (2050)
T ss_dssp             HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred             HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence            345566665  4799999999876552 1            1234456666666   3 568899998874211      


Q ss_pred             ---------HHHhhhcceeeecCCe
Q 007344          172 ---------SVYFKFDDIVLLTEGK  187 (607)
Q Consensus       172 ---------~i~~~~D~v~lL~~G~  187 (607)
                               .+...+|-++.|+...
T Consensus       529 ~p~~psGg~ale~~ADv~l~L~R~~  553 (2050)
T 3cmu_A          529 NPETTTGGNALKFYASVRLDIRRIG  553 (2050)
T ss_dssp             CCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred             CCcCCCCcchhhhhCCEEEEEEecc
Confidence                     3667789888886544

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=86.85  E-value=0.1  Score=49.48  Aligned_cols=19  Identities=37%  Similarity=0.550  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.+..
T Consensus        17 vG~~~~GKSsli~~l~~~~   35 (218)
T 4djt_A           17 IGDGGVGKTTYINRVLDGR   35 (218)
T ss_dssp             ECCTTSSHHHHHCBCTTCS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999998653

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=86.79  E-value=0.22  Score=50.10  Aligned_cols=17  Identities=41%  Similarity=0.599  Sum_probs=15.5

Q ss_pred             CCCCCCcHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAG   17 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG   17 (607)
                      .|++||||||+.+.|+.
T Consensus        81 ~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           81 TGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EECTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999983

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=86.79  E-value=0.26  Score=46.04  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=27.2

Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCC
Q 007344          127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP  169 (607)
Q Consensus       127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p  169 (607)
                      ++.++++||. ..+++.....+.+.+.+. ..+..+|++++.+
T Consensus       102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~  142 (226)
T 2chg_A          102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV  142 (226)
T ss_dssp             SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred             CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence            6789999995 456776666666666553 2344667777665

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=86.72  E-value=0.24  Score=47.50  Aligned_cols=18  Identities=50%  Similarity=0.877  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.|.
T Consensus        43 vG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           43 IGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             ECCTTSSHHHHHHHHHCC
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            699999999999999974

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=86.58  E-value=0.22  Score=47.56  Aligned_cols=19  Identities=37%  Similarity=0.602  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        19 ~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           19 IGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             ESCTTSSHHHHHHHHHHCC
T ss_pred             ECcCCCCHHHHHHHHhcCC
Confidence            5999999999999999864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=86.57  E-value=0.24  Score=48.02  Aligned_cols=19  Identities=37%  Similarity=0.543  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+||||+|..+.|+-.+
T Consensus        35 lGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           35 LGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             ECCTTCCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5999999999999998643

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=86.17  E-value=0.14  Score=47.17  Aligned_cols=18  Identities=33%  Similarity=0.447  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+.
T Consensus        28 ~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           28 LGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             EEETTSSHHHHHHHTCCS
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999999653

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=86.10  E-value=0.26  Score=50.79  Aligned_cols=19  Identities=53%  Similarity=0.788  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+|||||||.+.|+..+
T Consensus        11 ~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A           11 MGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             ECCTTSCHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHHc
Confidence            5999999999999999864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=86.08  E-value=0.3  Score=47.14  Aligned_cols=20  Identities=45%  Similarity=0.687  Sum_probs=17.8

Q ss_pred             CCCCCcHHHHHHHHHcCcCC
Q 007344            2 GPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~~   21 (607)
                      |++||||||+.+.|+..+..
T Consensus        13 G~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A           13 GPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             CSTTSSHHHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999887654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=86.07  E-value=0.57  Score=44.00  Aligned_cols=19  Identities=32%  Similarity=0.394  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        36 vG~~~~GKSsLi~~l~~~~   54 (204)
T 4gzl_A           36 VGDGAVGKTCLLISYTTNA   54 (204)
T ss_dssp             EESTTSSHHHHHHHHHHSC
T ss_pred             ECcCCCCHHHHHHHHHhCC
Confidence            5999999999999998643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=86.00  E-value=0.21  Score=47.65  Aligned_cols=19  Identities=53%  Similarity=0.758  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||++.+++..
T Consensus        44 vG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           44 MGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EESTTSSHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHh
Confidence            5999999999999998753

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=85.99  E-value=0.21  Score=46.88  Aligned_cols=19  Identities=21%  Similarity=0.359  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        35 vG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           35 VGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EECTTSSHHHHHHHHHHSC
T ss_pred             ECcCCCCHHHHHHHHhhCC
Confidence            5999999999999998753

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=85.82  E-value=0.26  Score=46.96  Aligned_cols=19  Identities=42%  Similarity=0.599  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        33 vG~~~vGKSsL~~~l~~~~   51 (214)
T 3q3j_B           33 VGDVQCGKTAMLQVLAKDC   51 (214)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECcCCCCHHHHHHHHhcCC
Confidence            5999999999999998753

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=85.60  E-value=0.26  Score=52.57  Aligned_cols=18  Identities=28%  Similarity=0.440  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++||||||+.+.|+..
T Consensus       264 ~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          264 VGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             ESCTTSSHHHHHHHHTGG
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999999864

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=85.50  E-value=0.32  Score=48.12  Aligned_cols=18  Identities=44%  Similarity=0.615  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      .||+|+|||||.++|+..
T Consensus        70 ~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           70 EGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            399999999999999985

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=85.44  E-value=0.42  Score=49.54  Aligned_cols=19  Identities=42%  Similarity=0.670  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+|||||||...|+..+
T Consensus        46 ~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           46 MGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             ECSTTSSHHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHHHHC
Confidence            5999999999999999865

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=85.43  E-value=0.28  Score=47.09  Aligned_cols=18  Identities=33%  Similarity=0.399  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +||+|+|||||...|+.+
T Consensus        40 ~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           40 TGDSGVGKSETALELVQR   57 (205)
T ss_dssp             ECCCTTTTHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999999875

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=85.41  E-value=0.32  Score=52.87  Aligned_cols=19  Identities=53%  Similarity=0.739  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||+|.|+|..
T Consensus       239 vG~~nvGKSSLln~L~~~~  257 (476)
T 3gee_A          239 AGKPNAGKSTLLNTLLGQE  257 (476)
T ss_dssp             ECCTTSSHHHHHHHCC---
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999863

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=85.35  E-value=0.29  Score=47.63  Aligned_cols=18  Identities=28%  Similarity=0.503  Sum_probs=16.6

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      |+.||||||+.+.|+..+
T Consensus         9 G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            9 GNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             ECTTSSHHHHHHHHHHHC
T ss_pred             cCCCCCHHHHHHHHHHHc
Confidence            899999999999999865

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=85.29  E-value=0.29  Score=50.74  Aligned_cols=19  Identities=42%  Similarity=0.632  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+|||||||.+.|+..+
T Consensus        13 ~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A           13 VGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             ECSTTSSHHHHHHHHHHHT
T ss_pred             ECCCcCcHHHHHHHHHHHc
Confidence            4999999999999999864

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=85.13  E-value=0.25  Score=46.57  Aligned_cols=19  Identities=26%  Similarity=0.401  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus        15 ~G~~~~GKTsli~~l~~~~   33 (212)
T 2j0v_A           15 VGDGAVGKTCMLICYTSNK   33 (212)
T ss_dssp             EESTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999998754

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=84.98  E-value=0.32  Score=46.22  Aligned_cols=19  Identities=37%  Similarity=0.674  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+.+.|+..+
T Consensus         9 ~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            9 DGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             ECCTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHhc
Confidence            4999999999999998853

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=84.90  E-value=0.31  Score=49.24  Aligned_cols=18  Identities=22%  Similarity=0.434  Sum_probs=16.7

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      ||+|+|||+|.++|+...
T Consensus        43 GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           43 GGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             ECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=84.88  E-value=0.26  Score=53.12  Aligned_cols=51  Identities=18%  Similarity=0.142  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHhhCCCeEEEeCC-CCCCCHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 007344          114 EKKRLSLACELIASPSVIYADEP-TTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ  168 (607)
Q Consensus       114 erqRvsIa~aL~~~p~illLDEP-tsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~  168 (607)
                      +.+....+...+.+++++++... +.|+.... ..+.+.+   .+.++.+|++.+.
T Consensus        89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l---~~~~~pvilV~NK  140 (456)
T 4dcu_A           89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKIL---YRTKKPVVLAVNK  140 (456)
T ss_dssp             HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHH---TTCCSCEEEEEEC
T ss_pred             HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHH---HHcCCCEEEEEEC
Confidence            56666677777778887665544 44565544 3444444   3467888877765

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.86  E-value=0.32  Score=52.16  Aligned_cols=68  Identities=22%  Similarity=0.296  Sum_probs=40.8

Q ss_pred             HHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHH----hcCCeEEEEecCChhHHHhhhcceeeecCCe-
Q 007344          123 ELIASPSVIYADEPTT----------GLDAFQAEKVMEALRQLA----QDGHTVICSIHQPRGSVYFKFDDIVLLTEGK-  187 (607)
Q Consensus       123 aL~~~p~illLDEPts----------GLD~~~~~~i~~~L~~la----~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~-  187 (607)
                      |-...|.|+|+||--+          +=+......+..+|..+-    ..+..||.+|..|..     .|.- ++..|| 
T Consensus       270 A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~-----LD~A-llRpGRf  343 (434)
T 4b4t_M          270 AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV-----LDPA-LLRSGRL  343 (434)
T ss_dssp             HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC-----CCTT-TCSTTSE
T ss_pred             HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh-----cCHh-HhcCCce
Confidence            3345799999999521          223344445556666663    235578889988742     2432 345565 


Q ss_pred             --eeeeCCCCC
Q 007344          188 --LVYAGPARD  196 (607)
Q Consensus       188 --iv~~G~~~~  196 (607)
                        .++.+.|+.
T Consensus       344 D~~I~i~lPd~  354 (434)
T 4b4t_M          344 DRKIEFPLPSE  354 (434)
T ss_dssp             EEEEECCCCCH
T ss_pred             eEEEEeCCcCH
Confidence              477787765

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=85.16  E-value=0.18  Score=47.30  Aligned_cols=18  Identities=33%  Similarity=0.438  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+.
T Consensus        36 ~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           36 VGDGAVGKTCLLISYTTN   53 (204)
Confidence            699999999999988753

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.68  E-value=0.33  Score=51.99  Aligned_cols=46  Identities=28%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             hhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hcCCeEEEEecCCh
Q 007344          125 IASPSVIYADEP----------TTGLDAFQAEKVMEALRQLA----QDGHTVICSIHQPR  170 (607)
Q Consensus       125 ~~~p~illLDEP----------tsGLD~~~~~~i~~~L~~la----~~g~tvi~~~H~p~  170 (607)
                      -..|.|+++||-          .++-|......+.++|..+-    ..|..||++|+.|.
T Consensus       263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~  322 (428)
T 4b4t_K          263 ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD  322 (428)
T ss_dssp             HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred             HcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence            346899999996          23334455555666666664    23567889998874

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=84.42  E-value=0.3  Score=49.22  Aligned_cols=19  Identities=42%  Similarity=0.571  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||+|.|.|..
T Consensus       126 vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          126 IGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             EESTTSSHHHHHHHHHTSC
T ss_pred             EecCCCchHHHHHHHhcCc
Confidence            5999999999999999965

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=84.37  E-value=0.39  Score=47.94  Aligned_cols=19  Identities=42%  Similarity=0.674  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||||.+.|+...
T Consensus        56 ~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           56 IGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999999865

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.35  E-value=0.35  Score=51.35  Aligned_cols=66  Identities=23%  Similarity=0.282  Sum_probs=40.3

Q ss_pred             hhCCCeEEEeCCCCC----------CCHHHHHHHHHHHHHHH----hcCCeEEEEecCChhHHHhhhcceeeecCCe---
Q 007344          125 IASPSVIYADEPTTG----------LDAFQAEKVMEALRQLA----QDGHTVICSIHQPRGSVYFKFDDIVLLTEGK---  187 (607)
Q Consensus       125 ~~~p~illLDEPtsG----------LD~~~~~~i~~~L~~la----~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~---  187 (607)
                      -..|.|+|+||--+-          =|......+.++|..+-    ..+..||.+|..|..     .|.-+ +.-||   
T Consensus       239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~-----LDpAl-lRpGRfD~  312 (405)
T 4b4t_J          239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI-----LDPAL-LRPGRIDR  312 (405)
T ss_dssp             HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS-----SCHHH-HSTTSSCC
T ss_pred             HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh-----CCHhH-cCCCcCce
Confidence            456999999996542          23344455666776664    234578889988742     24332 34454   


Q ss_pred             eeeeCCCCC
Q 007344          188 LVYAGPARD  196 (607)
Q Consensus       188 iv~~G~~~~  196 (607)
                      .++.+.|+.
T Consensus       313 ~I~i~lPd~  321 (405)
T 4b4t_J          313 KIEFPPPSV  321 (405)
T ss_dssp             EEECCCCCH
T ss_pred             EEEcCCcCH
Confidence            567777765

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=84.29  E-value=0.24  Score=49.00  Aligned_cols=18  Identities=33%  Similarity=0.547  Sum_probs=16.5

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      |+.||||||+.+.|+..+
T Consensus        31 G~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           31 GNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CSTTSSHHHHHTTTGGGC
T ss_pred             CCCCCCHHHHHHHHHHhc
Confidence            999999999999998765

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=84.27  E-value=0.29  Score=47.81  Aligned_cols=19  Identities=42%  Similarity=0.602  Sum_probs=14.2

Q ss_pred             CCCCCcHHHHHHHHHcCcC
Q 007344            2 GPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~   20 (607)
                      |++||||||+.+.|+..+.
T Consensus        32 G~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           32 GIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCC---CHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999988663

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=84.16  E-value=0.37  Score=49.42  Aligned_cols=19  Identities=42%  Similarity=0.632  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+|||||||.+.|+-..
T Consensus         9 ~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            9 VGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             ECCTTSCHHHHHHHHHHTT
T ss_pred             ECCCcCCHHHHHHHHHHhC
Confidence            4999999999999999764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.09  E-value=0.36  Score=51.78  Aligned_cols=68  Identities=25%  Similarity=0.371  Sum_probs=43.8

Q ss_pred             HHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHH----hcCCeEEEEecCChhHHHhhhcceeeecCCee
Q 007344          123 ELIASPSVIYADEPTT----------GLDAFQAEKVMEALRQLA----QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL  188 (607)
Q Consensus       123 aL~~~p~illLDEPts----------GLD~~~~~~i~~~L~~la----~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i  188 (607)
                      |-...|.|+|+||--+          +-|......+..+|..+-    ..+..||.+|.+|.     ..|.- ++..||+
T Consensus       270 A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~-----~LDpA-llRpGRf  343 (437)
T 4b4t_L          270 AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD-----TLDPA-LLRPGRL  343 (437)
T ss_dssp             HHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTT-----SSCTT-TTSTTSE
T ss_pred             HHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCch-----hhCHH-HhCCCcc
Confidence            3446799999999843          234445555666777764    23567899999874     23543 3566754


Q ss_pred             ---eeeCCCCC
Q 007344          189 ---VYAGPARD  196 (607)
Q Consensus       189 ---v~~G~~~~  196 (607)
                         ++.+.|+.
T Consensus       344 D~~I~i~lPd~  354 (437)
T 4b4t_L          344 DRKVEIPLPNE  354 (437)
T ss_dssp             EEEECCCCCCH
T ss_pred             ceeeecCCcCH
Confidence               77777765

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=83.99  E-value=0.35  Score=47.44  Aligned_cols=20  Identities=35%  Similarity=0.594  Sum_probs=17.7

Q ss_pred             CCCCCcHHHHHHHHHcCcCC
Q 007344            2 GPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~~   21 (607)
                      |++||||||+.+.|+..+..
T Consensus        34 G~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           34 GLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             ESTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            89999999999999987643

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=83.98  E-value=0.4  Score=48.93  Aligned_cols=19  Identities=37%  Similarity=0.688  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||+|.++++...
T Consensus        57 ~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           57 YGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             ECSSSSCHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHHH
Confidence            3999999999999999853

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=83.67  E-value=0.38  Score=46.39  Aligned_cols=20  Identities=45%  Similarity=0.562  Sum_probs=17.8

Q ss_pred             CCCCCcHHHHHHHHHcCcCC
Q 007344            2 GPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~~   21 (607)
                      |++||||||+.+.|+..+..
T Consensus        10 G~~gsGKsT~~~~l~~~l~~   29 (213)
T 4tmk_A           10 GLEGAGKTTARNVVVETLEQ   29 (213)
T ss_dssp             ECTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999987653

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=83.64  E-value=1.8  Score=53.92  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=44.9

Q ss_pred             HHHHHHh--hCCCeEEEeCCCCCCCH-------------HHHHHHHHHHHHH---H-hcCCeEEEEecCCh---------
Q 007344          119 SLACELI--ASPSVIYADEPTTGLDA-------------FQAEKVMEALRQL---A-QDGHTVICSIHQPR---------  170 (607)
Q Consensus       119 sIa~aL~--~~p~illLDEPtsGLD~-------------~~~~~i~~~L~~l---a-~~g~tvi~~~H~p~---------  170 (607)
                      .+++.++  .+|+++++|..++=...             ..++.+.+.+++|   + +.|.+||++.|-..         
T Consensus       451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~  530 (1706)
T 3cmw_A          451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP  530 (1706)
T ss_dssp             HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCC
T ss_pred             HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCC
Confidence            4455554  47999999999876541             1233445555555   3 56899999987421         


Q ss_pred             ------hHHHhhhcceeeecCCe
Q 007344          171 ------GSVYFKFDDIVLLTEGK  187 (607)
Q Consensus       171 ------~~i~~~~D~v~lL~~G~  187 (607)
                            ..+...+|-++.+...+
T Consensus       531 ~~p~gg~ale~~ADv~L~L~R~~  553 (1706)
T 3cmw_A          531 ETTTGGNALKFYASVRLDIRRIG  553 (1706)
T ss_dssp             EEESSCSHHHHHEEEEEEEEEEE
T ss_pred             ccCCCCcceeeeCCEEEEEEecc
Confidence                  24667789888876543

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=83.45  E-value=0.47  Score=45.40  Aligned_cols=19  Identities=53%  Similarity=0.873  Sum_probs=17.3

Q ss_pred             CCCCCcHHHHHHHHHcCcC
Q 007344            2 GPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~   20 (607)
                      |+-||||||+.+.|+..+.
T Consensus         9 G~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            9 GPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCcHHHHHHHHHHHHH
Confidence            8999999999999998764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=83.31  E-value=0.41  Score=49.00  Aligned_cols=19  Identities=53%  Similarity=0.669  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+|||||||...|+...
T Consensus        16 ~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           16 MGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             ECCTTSCHHHHHHHHHHHS
T ss_pred             ECCCccCHHHHHHHHHHhC
Confidence            4999999999999999754

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=83.30  E-value=0.39  Score=45.05  Aligned_cols=18  Identities=28%  Similarity=0.375  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      .|+||+|||||...|..+
T Consensus        22 ~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           22 TGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EESSSSSHHHHHHHHHHT
T ss_pred             EcCCCCCHHHHHHHHHHc
Confidence            489999999999988763

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=83.26  E-value=0.47  Score=46.17  Aligned_cols=19  Identities=53%  Similarity=0.595  Sum_probs=17.2

Q ss_pred             CCCCCcHHHHHHHHHcCcC
Q 007344            2 GPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~   20 (607)
                      |++||||||+.+.|+..+.
T Consensus        28 G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           28 GIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998664

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=83.17  E-value=0.43  Score=48.47  Aligned_cols=18  Identities=39%  Similarity=0.741  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+.
T Consensus         9 vG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            9 MGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             ECCTTSSHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            699999999999998876

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=83.03  E-value=0.39  Score=50.76  Aligned_cols=19  Identities=37%  Similarity=0.623  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+|+|||||++.|++..
T Consensus       180 vG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          180 VAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             ECCSSSSHHHHHHHHHHHH
T ss_pred             ecCCCCChhHHHHHHHHHH
Confidence            5999999999999999865

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=82.79  E-value=0.43  Score=46.20  Aligned_cols=20  Identities=40%  Similarity=0.491  Sum_probs=17.9

Q ss_pred             CCCCCcHHHHHHHHHcCcCC
Q 007344            2 GPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~~   21 (607)
                      |++||||||+.+.|+..+..
T Consensus        12 G~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A           12 GLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             ECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCCCCHHHHHHHHHHHhcc
Confidence            89999999999999987643

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=82.78  E-value=0.29  Score=50.75  Aligned_cols=19  Identities=26%  Similarity=0.559  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||+|.|.|..
T Consensus        37 vG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           37 VGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             ECBTTSSHHHHHHTTTTSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=82.72  E-value=0.36  Score=49.46  Aligned_cols=18  Identities=33%  Similarity=0.366  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|+||+|||||...|.++
T Consensus       150 ~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          150 TGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EESTTSSHHHHHHHHHHT
T ss_pred             EeCCCCCHHHHHHHHHhc
Confidence            499999999999999885

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=82.37  E-value=0.47  Score=51.10  Aligned_cols=19  Identities=53%  Similarity=0.788  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||||.++|+...
T Consensus        56 ~GppGtGKTtlAr~ia~~~   74 (447)
T 3pvs_A           56 WGPPGTGKTTLAEVIARYA   74 (447)
T ss_dssp             ECSTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCcHHHHHHHHHHHh
Confidence            3999999999999999864

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=82.19  E-value=0.55  Score=44.53  Aligned_cols=20  Identities=45%  Similarity=0.602  Sum_probs=17.6

Q ss_pred             CCCCCcHHHHHHHHHcCcCC
Q 007344            2 GPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~~   21 (607)
                      |+-||||||..+.|+..+..
T Consensus         7 G~DGsGKsTq~~~L~~~L~~   26 (197)
T 3hjn_A            7 GIDGSGKSTQIQLLAQYLEK   26 (197)
T ss_dssp             CSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999987643

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=82.12  E-value=0.42  Score=50.64  Aligned_cols=41  Identities=22%  Similarity=0.121  Sum_probs=29.5

Q ss_pred             HHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 007344           84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYA  133 (607)
Q Consensus        84 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illL  133 (607)
                      .++++++.++....         ...+|.+|.+++.-..-+...|-++++
T Consensus       181 ~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~  221 (397)
T 1wxq_A          181 DVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAA  221 (397)
T ss_dssp             HHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred             HHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence            46677777766321         236899998888777777778998887

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=82.09  E-value=0.53  Score=47.95  Aligned_cols=19  Identities=47%  Similarity=0.830  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||||++.|+...
T Consensus        61 ~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           61 SGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             ECSTTSSHHHHHHHHHHHT
T ss_pred             ECcCCCCHHHHHHHHHHHh
Confidence            3999999999999998864

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=82.02  E-value=0.45  Score=49.81  Aligned_cols=18  Identities=28%  Similarity=0.543  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||+|.|.|.
T Consensus       168 vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          168 VGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EcCCCCchHHHHHHHHhh
Confidence            599999999999999986

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=81.96  E-value=0.54  Score=48.68  Aligned_cols=19  Identities=58%  Similarity=0.868  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+||||+.++|+...
T Consensus        57 ~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           57 IGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             ECCTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHc
Confidence            4999999999999999864

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=81.80  E-value=0.4  Score=51.91  Aligned_cols=19  Identities=32%  Similarity=0.482  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||+|.|+|..
T Consensus       230 vG~~nvGKSSLln~L~~~~  248 (462)
T 3geh_A          230 VGRPNVGKSSLLNAWSQSD  248 (462)
T ss_dssp             EECTTSSHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHhCCC
Confidence            5999999999999999853

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=81.72  E-value=0.53  Score=46.06  Aligned_cols=19  Identities=32%  Similarity=0.618  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+.+.|+..+
T Consensus        14 ~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A           14 LGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999998753

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=81.70  E-value=0.47  Score=49.26  Aligned_cols=20  Identities=35%  Similarity=0.589  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +|++|+|||||++.|++.+.
T Consensus        85 ~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           85 TGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             ECCTTSSHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            59999999999999988653

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.61  E-value=0.52  Score=50.83  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=40.2

Q ss_pred             HHhhCCCeEEEeCCCCCC----------CHHHHHHHHHHHHHHH----hcCCeEEEEecCChhHHHhhhcceeeecCC--
Q 007344          123 ELIASPSVIYADEPTTGL----------DAFQAEKVMEALRQLA----QDGHTVICSIHQPRGSVYFKFDDIVLLTEG--  186 (607)
Q Consensus       123 aL~~~p~illLDEPtsGL----------D~~~~~~i~~~L~~la----~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G--  186 (607)
                      |-...|.|+|+||--+-.          +......+..+|.++-    ..+..||.+|..|..     .|.- ++.-|  
T Consensus       298 Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~-----LDpA-LlRpGRF  371 (467)
T 4b4t_H          298 ARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT-----LDPA-LLRPGRI  371 (467)
T ss_dssp             HHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS-----BCHH-HHSTTTC
T ss_pred             HHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc-----CChh-hhccccc
Confidence            445679999999986432          3334445566666663    234567888887742     2433 23334  


Q ss_pred             -eeeeeCCCCC
Q 007344          187 -KLVYAGPARD  196 (607)
Q Consensus       187 -~iv~~G~~~~  196 (607)
                       +.++.+.|+.
T Consensus       372 D~~I~i~lPd~  382 (467)
T 4b4t_H          372 DRKVEFSLPDL  382 (467)
T ss_dssp             CEEECCCCCCH
T ss_pred             cEEEEeCCcCH
Confidence             3567777654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=81.34  E-value=0.31  Score=46.29  Aligned_cols=18  Identities=44%  Similarity=0.857  Sum_probs=15.5

Q ss_pred             CCCCCCcHHHHHHH-HHcC
Q 007344            1 MGPSGSGKTTLLNV-LAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~-LaG~   18 (607)
                      +|++|+|||||++. +.|.
T Consensus        21 ~G~~~~GKSsli~~~~~~~   39 (221)
T 3gj0_A           21 VGDGGTGKTTFVKRHLTGE   39 (221)
T ss_dssp             EECTTSSHHHHHTTBHHHH
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            59999999999998 6554

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=81.13  E-value=0.49  Score=50.84  Aligned_cols=21  Identities=43%  Similarity=0.613  Sum_probs=18.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      .||+|+||||+.++|++.+..
T Consensus        56 ~GppGtGKT~lar~lA~~l~~   76 (444)
T 1g41_A           56 IGPTGVGKTEIARRLAKLANA   76 (444)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTC
T ss_pred             EcCCCCCHHHHHHHHHHHcCC
Confidence            499999999999999998743

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=81.02  E-value=2.6  Score=40.87  Aligned_cols=53  Identities=32%  Similarity=0.360  Sum_probs=43.6

Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEec---------CChhHHHhhhcceeeec
Q 007344          127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH---------QPRGSVYFKFDDIVLLT  184 (607)
Q Consensus       127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H---------~p~~~i~~~~D~v~lL~  184 (607)
                      +++++++||--. |+.    ++++.++.+++.|.+||++-|         .+...+..++|+|.-|+
T Consensus        89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            589999999964 553    466677788877999999999         67778888999999985

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=80.93  E-value=0.32  Score=43.37  Aligned_cols=42  Identities=12%  Similarity=0.072  Sum_probs=29.6

Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCC
Q 007344          127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP  169 (607)
Q Consensus       127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p  169 (607)
                      +..++++||.- .|+......+.+.+.+..+.+..+|+++..+
T Consensus        75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~  116 (143)
T 3co5_A           75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA  116 (143)
T ss_dssp             TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence            35689999965 5788888888887776544455677777654

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=80.87  E-value=0.62  Score=48.35  Aligned_cols=19  Identities=37%  Similarity=0.688  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||||.++|+...
T Consensus        90 ~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           90 YGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             ECSTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHHh
Confidence            3999999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	607
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	2e-31
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	5e-31
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-29
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	1e-28
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	6e-27
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	5e-26
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	9e-26
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	9e-26
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	2e-25
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	2e-25
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	4e-25
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-23
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	3e-23
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	2e-22
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	5e-22
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	5e-22
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	7e-22
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	6e-20
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	1e-18
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	9e-18
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	2e-10
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	8e-09
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	4e-08
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	8e-05
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.003

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  120 bits (302), Expect = 2e-31
 Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 27/224 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF---AYVRQEDLFFSQ 57
           +GPSG GKTT L ++AG    +      G +    +  +    K    + V Q    +  
Sbjct: 38  LGPSGCGKTTTLRMIAGLEEPT-----EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPH 92

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           +TV E ++   +++       +E D+ V      L +       + +     +SGG+++R
Sbjct: 93  MTVYENIAFPLKIKK---FPKDEIDKRVRWAAELLQI-----EELLNRYPAQLSGGQRQR 144

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFK 176
           +++A  ++  P V+  DEP + LDA     +   +++L Q    T I   H         
Sbjct: 145 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTM 203

Query: 177 FDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLA 220
            D I ++  G+L+  G   +          Y  P+ V  A F+ 
Sbjct: 204 GDRIAVMNRGQLLQIGSPTEV---------YLRPNSVFVATFIG 238

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  118 bits (298), Expect = 5e-31
 Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 21/205 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQE 51
           MGPSGSGK+T+LN++      +      G + ++   +++         +  K  +V Q+
Sbjct: 37  MGPSGSGKSTMLNIIGCLDKPT-----EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91

Query: 52  DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
                 LT  E + L    +    +S EER +     L    L    +    + K   +S
Sbjct: 92  FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL----EERFANHKPNQLS 147

Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPR 170
           GG+++R+++A  L  +P +I AD+PT  LD+   EK+M+ L++L ++ G TV+   H   
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207

Query: 171 GSVYFKFDDIVLLTEGKLVYAGPAR 195
            + +   + I+ L +G++      R
Sbjct: 208 VARF--GERIIYLKDGEVEREEKLR 230

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (289), Expect = 2e-29
 Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 20/196 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
            G +GSGKT+LL ++ G+L AS      G+++ +G+         ++  Q        T+
Sbjct: 68  TGSTGSGKTSLLMLILGELEAS-----EGIIKHSGR--------VSFCSQFSWIMPG-TI 113

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           +E +              +   +               ++ +G+     +SGG++ R+SL
Sbjct: 114 KENIIFGVSYDEYRY---KSVVKACQLQQDITKFAEQDNTVLGE-GGVTLSGGQRARISL 169

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           A  +     +   D P   LD F  E+V E+         T I    +       K D I
Sbjct: 170 ARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKI 227

Query: 181 VLLTEGKLVYAGPARD 196
           ++L +G   + G   +
Sbjct: 228 LILHQGSSYFYGTFSE 243

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  112 bits (281), Expect = 1e-28
 Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 27/212 (12%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK------FAYVRQEDLF 54
           +GP+GSGK+TL+NV+ G L A       G +    K  +NK              Q    
Sbjct: 36  IGPNGSGKSTLINVITGFLKAD-----EGRVYFENKDITNKEPAELYHYGIVRTFQTPQP 90

Query: 55  FSQLTVRETLSLAAELQLPE----------ILSVEERDEYVNSLLFKLGLVSCADSNVGD 104
             ++TV E L +                  I   EE  E    +L  L L    D   G+
Sbjct: 91  LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE 150

Query: 105 AKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVIC 164
                +SGG+ K + +   L+ +P +I  DEP  G+    A  +   + +L   G T + 
Sbjct: 151 -----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI 205

Query: 165 SIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196
             H+    V    D + ++  G+++  G   +
Sbjct: 206 IEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE 236

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  106 bits (265), Expect = 6e-27
 Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
            GP+G GKTTLL  ++  L         G +  NG P +    K  ++ +E +   +++V
Sbjct: 33  HGPNGIGKTTLLKTISTYLKPL-----KGEIIYNGVPITKVKGKIFFLPEEIIVPRKISV 87

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
            + L   A L       V+     +   L  + ++          K+  +S G  +R+ L
Sbjct: 88  EDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKK------KLGELSQGTIRRVQL 136

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
           A  L+ +  +   D+P   +D     KV++++ ++ ++   VI S  +
Sbjct: 137 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 184

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score =  105 bits (263), Expect = 5e-26
 Identities = 57/242 (23%), Positives = 93/242 (38%), Gaps = 43/242 (17%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY----------------- 43
           +G SGSGK+T L  +      S      G + VNG+  +                     
Sbjct: 34  IGSSGSGKSTFLRCINFLEKPS-----EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLR 88

Query: 44  -KFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNV 102
            +   V Q    +S +TV E +  A    L   LS  +  E     L K+G+    D   
Sbjct: 89  TRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKHDARERALKYLAKVGI----DERA 142

Query: 103 GDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTV 162
                  +SGG+++R+S+A  L   P V+  DEPT+ LD     +V+  ++QLA++G T+
Sbjct: 143 QGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 202

Query: 163 ICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADL 222
           +   H+  G        ++ L +GK+   G              +  P        L   
Sbjct: 203 VVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQV---------FGNPQS----PRLQQF 248

Query: 223 IS 224
           + 
Sbjct: 249 LK 250

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  103 bits (259), Expect = 9e-26
 Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 18/200 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF----AYVRQEDLFFS 56
           +GP+G+GKTT L +++  +  S     SG++ V GK    + ++     +Y+ +E   + 
Sbjct: 34  IGPNGAGKTTTLRIISTLIKPS-----SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYR 88

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
            +   E L   A        S  E +E V       GL           +V   S G  +
Sbjct: 89  NMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGL-----GEKIKDRVSTYSKGMVR 140

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
           +L +A  L+ +P +   DEPT+GLD   A +V + L+Q +Q+G T++ S H     V F 
Sbjct: 141 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFL 199

Query: 177 FDDIVLLTEGKLVYAGPARD 196
            D I L+  G +V  G   +
Sbjct: 200 CDRIALIHNGTIVETGTVEE 219

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  104 bits (261), Expect = 9e-26
 Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 17/201 (8%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-----KFAYVRQEDLFF 55
           +G SG GK+TL+N++      +     SG + ++G    +        +   V+Q+++ F
Sbjct: 50  VGMSGGGKSTLINLIPRFYDVT-----SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF 104

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
           S  TV+E + L       E   V E  +  N+  F + L    D+ VG+ +   +SGG+K
Sbjct: 105 S-DTVKENILLGRPTATDE--EVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQK 160

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
           +RLS+A   + +P ++  DE T+ LD      + EAL  L++   T +   H+   S   
Sbjct: 161 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRL--STIT 217

Query: 176 KFDDIVLLTEGKLVYAGPARD 196
             D IV++  G +V  G  R+
Sbjct: 218 HADKIVVIENGHIVETGTHRE 238

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  103 bits (258), Expect = 2e-25
 Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 23/205 (11%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--------FAYVRQED 52
           +G SG+GK+TL+  +      +      G + V+G+  +  +             + Q  
Sbjct: 37  IGASGAGKSTLIRCVNLLERPT-----EGSVLVDGQELTTLSESELTKARRQIGMIFQHF 91

Query: 53  LFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
              S  TV   ++L  EL        +E    V  LL  +GL      +  D+    +SG
Sbjct: 92  NLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGL-----GDKHDSYPSNLSG 143

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRG 171
           G+K+R+++A  L ++P V+  DE T+ LD      ++E L+ + +  G T++   H+   
Sbjct: 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEM-D 202

Query: 172 SVYFKFDDIVLLTEGKLVYAGPARD 196
            V    D + +++ G+L+      +
Sbjct: 203 VVKRICDCVAVISNGELIEQDTVSE 227

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  103 bits (258), Expect = 2e-25
 Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 10/197 (5%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK-FAYVRQEDLFFSQLT 59
           +G +G+GKTT L+ +AG + A     +    ++  KP+        A V +    F +LT
Sbjct: 38  IGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELT 97

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           V E L + A  +  +   ++   E++ SL  +L                 +SGGE++ L+
Sbjct: 98  VYENLMMGAYNRKDK-EGIKRDLEWIFSLFPRL-------KERLKQLGGTLSGGEQQMLA 149

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD 179
           +   L++ P ++  DEP+ GL      +V E ++++ Q+G T++       G++      
Sbjct: 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKV-AHY 208

Query: 180 IVLLTEGKLVYAGPARD 196
             +L  G++V  G A +
Sbjct: 209 GYVLETGQIVLEGKASE 225

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (254), Expect = 4e-25
 Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 22/203 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +GP+G+GK+TLL  +AG       +  +G   +    ++  A   AY+ Q+        V
Sbjct: 31  VGPNGAGKSTLLARMAGMTSGKGSIQFAGQ-PLEAWSATKLALHRAYLSQQQTPPFATPV 89

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
              L+L            + R E +N +   L L      +        +SGGE +R+ L
Sbjct: 90  WHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRL 136

Query: 121 ACELIA-------SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
           A  ++        +  ++  DEP   LD  Q   + + L  L Q G  ++ S H      
Sbjct: 137 AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HT 195

Query: 174 YFKFDDIVLLTEGKLVYAGPARD 196
                   LL  GK++ +G   +
Sbjct: 196 LRHAHRAWLLKGGKMLASGRREE 218

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 98.4 bits (245), Expect = 1e-23
 Identities = 42/196 (21%), Positives = 85/196 (43%), Gaps = 6/196 (3%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +G SGSGK+T+ +++           L    ++     ++   + A V Q    F+    
Sbjct: 47  VGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVA 106

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
                   E    E   +EE      ++ F   + +  D+ +G+     +SGG+++R+++
Sbjct: 107 NNIAYARTEEYSRE--QIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAI 163

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
           A  L+    ++  DE T+ LD      +  AL +L +   T +   H+   S   + D+I
Sbjct: 164 ARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL--STIEQADEI 220

Query: 181 VLLTEGKLVYAGPARD 196
           V++ +G +V  G   +
Sbjct: 221 VVVEDGIIVERGTHSE 236

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.9 bits (241), Expect = 3e-23
 Identities = 44/197 (22%), Positives = 83/197 (42%), Gaps = 6/197 (3%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
           +GP+GSGK+T+  +L      +    L     +          + A V QE   F   ++
Sbjct: 46  VGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSL 104

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
           +E ++     + P +  +        +  F  GL    D+ V +     +SGG+++ ++L
Sbjct: 105 QENIAYGLTQK-PTMEEITAAAVKSGAHSFISGLPQGYDTEVDE-AGSQLSGGQRQAVAL 162

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDD 179
           A  LI  P V+  D+ T+ LDA    +V + L +  +    +V+        S+  + D 
Sbjct: 163 ARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADH 220

Query: 180 IVLLTEGKLVYAGPARD 196
           I+ L  G +   G  + 
Sbjct: 221 ILFLEGGAIREGGTHQQ 237

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 94.6 bits (235), Expect = 2e-22
 Identities = 46/209 (22%), Positives = 100/209 (47%), Gaps = 12/209 (5%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASP-RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +G SGSGK+TL  ++    +    ++ + G  ++     +    +   V Q+++  +  +
Sbjct: 35  VGRSGSGKSTLTKLIQRFYIPENGQVLIDGH-DLALADPNWLRRQVGVVLQDNVLLN-RS 92

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           + + +SLA      E   V    +   +  F +  +    + +   +  G+SGG+++R++
Sbjct: 93  IIDNISLANPGMSVE--KVIYAAKLAGAHDF-ISELREGYNTIVGEQGAGLSGGQRQRIA 149

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD 179
           +A  L+ +P ++  DE T+ LD      +M  + ++ + G TVI   H+   S     D 
Sbjct: 150 IARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL--STVKNADR 206

Query: 180 IVLLTEGKLVYAGPARD---EPLAYFSRF 205
           I+++ +GK+V  G  ++   EP + +S  
Sbjct: 207 IIVMEKGKIVEQGKHKELLSEPESLYSYL 235

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 93.1 bits (231), Expect = 5e-22
 Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 18/200 (9%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA---YKFAYVRQEDLFFSQ 57
           +GPSG GK+TLL ++AG    +     SG L +  K  ++          V Q    +  
Sbjct: 32  VGPSGCGKSTLLRMIAGLETIT-----SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPH 86

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           L+V E +S   +L        E  ++ VN +   L L     +++ D K + +SGG+++R
Sbjct: 87  LSVAENMSFGLKLAGA---KKEVINQRVNQVAEVLQL-----AHLLDRKPKALSGGQRQR 138

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICSIHQPRGSVYFK 176
           +++   L+A PSV   DEP + LDA    ++   + +L  + G T+I   H    ++   
Sbjct: 139 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA 198

Query: 177 FDDIVLLTEGKLVYAGPARD 196
            D IV+L  G++   G   +
Sbjct: 199 -DKIVVLDAGRVAQVGKPLE 217

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 93.4 bits (232), Expect = 5e-22
 Identities = 47/201 (23%), Positives = 94/201 (46%), Gaps = 16/201 (7%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-----KFAYVRQEDLFF 55
            GPSG GK+T+ ++L      +     +G + ++G+P  N +      +  +V Q+    
Sbjct: 34  AGPSGGGKSTIFSLLERFYQPT-----AGEITIDGQPIDNISLENWRSQIGFVSQDSAIM 88

Query: 56  SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
           +  T+RE L+   E    +   + +  +   +  F   +    ++ VG+ +   ISGG++
Sbjct: 89  A-GTIRENLTYGLEGDYTDE-DLWQVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQR 145

Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
           +RL++A   + +P ++  DE T  LD+     V +AL  L + G T +   H+   S   
Sbjct: 146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRL--STIV 202

Query: 176 KFDDIVLLTEGKLVYAGPARD 196
             D I  + +G++  +G   +
Sbjct: 203 DADKIYFIEKGQITGSGKHNE 223

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 92.7 bits (230), Expect = 7e-22
 Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 23/224 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMAS-PRLHLSGLLEVNGKPSSNKA---YKFAYVRQEDLFFS 56
           +GPSG GKTT L ++AG    S  ++++   L  + +            A V Q    + 
Sbjct: 35  LGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYP 94

Query: 57  QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
            +TV + ++   +L+    +  +E D+ V  +   LGL     + + + K R +SGG+++
Sbjct: 95  HMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGL-----TELLNRKPRELSGGQRQ 146

Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICSIHQPRGSVYF 175
           R++L   ++  P V   DEP + LDA    ++   L++L  Q G T I   H        
Sbjct: 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMT 205

Query: 176 KFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFL 219
             D I ++  G L   G   +          Y  P +   A F+
Sbjct: 206 MGDRIAVMNRGVLQQVGSPDEV---------YDKPANTFVAGFI 240

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 87.0 bits (215), Expect = 6e-20
 Identities = 47/200 (23%), Positives = 91/200 (45%), Gaps = 20/200 (10%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQ 57
           +GP+G+GK+  L ++AG +         G + +NG   +    +     +V Q+   F  
Sbjct: 30  LGPTGAGKSVFLELIAGIVKPD-----RGEVRLNGADITPLPPERRGIGFVPQDYALFPH 84

Query: 58  LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
           L+V   ++          +   ERD  V  +  KLG      +++ D K   +SGGE++R
Sbjct: 85  LSVYRNIAYG-----LRNVERVERDRRVREMAEKLG-----IAHLLDRKPARLSGGERQR 134

Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICSIHQPRGSVYFK 176
           ++LA  L+  P ++  DEP + +D      +ME LR +  +    ++   H         
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAML 193

Query: 177 FDDIVLLTEGKLVYAGPARD 196
            D++ ++  G++V  G  ++
Sbjct: 194 ADEVAVMLNGRIVEKGKLKE 213

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 83.6 bits (206), Expect = 1e-18
 Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 32/228 (14%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY--------KFAYVRQED 52
           +GPSG+GKTT + ++AG  + S     +G L  + +  ++           K   V Q  
Sbjct: 37  LGPSGAGKTTFMRIIAGLDVPS-----TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW 91

Query: 53  LFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
             +  LT  E ++          +S EE  + V  +   L +    +        R +SG
Sbjct: 92  ALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSG 143

Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICSIHQPRG 171
            +++R++LA  L+  PS++  DEP + LDA   +     ++++  + G T++   H P  
Sbjct: 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-A 202

Query: 172 SVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFL 219
            ++   D + +L +GKLV  G   D          Y  P  +  A  +
Sbjct: 203 DIFAIADRVGVLVKGKLVQVGKPEDL---------YDNPVSIQVASLI 241

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 80.5 bits (198), Expect = 9e-18
 Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 26/221 (11%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASP-RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
           +GP+G+GKT  L ++AG  +    R+ L G    +  P   + +  A+V Q    F  + 
Sbjct: 32  LGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP---EKHDIAFVYQNYSLFPHMN 88

Query: 60  VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
           V++ L     ++        +  + V      L +    D          +SGGE++R++
Sbjct: 89  VKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLD-----RNPLTLSGGEQQRVA 137

Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICSIHQPRGSVYFKFD 178
           LA  L+ +P ++  DEP + LD    E   E L  L  ++  TV+   H    +     D
Sbjct: 138 LARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMA-D 196

Query: 179 DIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFL 219
            I ++ +GKL+  G   +     F +     P     A F+
Sbjct: 197 RIAVVMDGKLIQVGKPEE----IFEK-----PVEGRVASFV 228

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 21/198 (10%), Positives = 44/198 (22%), Gaps = 37/198 (18%)

Query: 1   MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
            G  G GKTTL+  +  +L        +               +  +         ++  
Sbjct: 6   TGEPGVGKTTLVKKIVERLGKR-----AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60

Query: 61  RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
            +           +++     +                                    + 
Sbjct: 61  SKF------FTSKKLVGSYGVNVQYFEE----------------------LAIPILERAY 92

Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
                    VI  DE        + +      + +      V+ +I      V+    +I
Sbjct: 93  REAKKDRRKVIIIDEIGKMELFSK-KFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEI 149

Query: 181 VLLTEGKLVYAGPA-RDE 197
             L    L+   P  RD 
Sbjct: 150 RRLPGAVLIELTPENRDV 167

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (99), Expect = 8e-05
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 108 RGISGGEKKRLSLACELI---ASPSVIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
             +SGGEK   +LA         PS  +  DE    LD    +++   +R+        I
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390

Query: 164 CSIHQPR 170
               +  
Sbjct: 391 VISLKNT 397

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 6/159 (3%)

Query: 2   GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
             SG+GKTTLL  L   L A            +             +R+     + +  +
Sbjct: 9   AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVASQ 68

Query: 62  ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA 121
           +  +L  E    E L ++     +++    L LV           V    G   +   L 
Sbjct: 69  QRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPEELV 128

Query: 122 CEL----IASPSVIYADEPTTGLDAFQ--AEKVMEALRQ 154
            +     +AS   +  D     ++  +  A+ V+E +++
Sbjct: 129 IDRHVIAVASDVPLNLDVALLDINDVEGLADFVVEWMQK 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	607
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.73
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.52
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.19
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.78
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.95
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.5
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.25
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.99
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.88
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.85
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.72
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.3
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.15
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	95.09
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.09
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.08
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.08
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.04
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.83
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	94.82
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.75
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	94.73
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	94.68
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.6
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	94.6
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.58
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.45
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	94.45
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	94.43
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.38
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.31
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.13
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.1
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.07
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.97
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	93.97
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	93.83
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	93.81
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.78
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.78
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	93.68
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.63
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.63
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	93.61
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	93.57
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	93.51
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.48
d1nrjb_	209	Signal recognition particle receptor beta-subunit	93.45
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.45
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	93.44
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	93.39
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.38
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	93.29
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	93.29
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	93.27
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.25
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.2
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.15
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	93.13
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	93.07
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	93.02
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	92.99
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.78
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	92.72
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	92.68
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	92.67
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	92.64
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	92.57
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	92.53
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	92.52
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.52
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	92.5
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	92.5
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	92.47
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	92.4
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	92.32
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	92.24
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	92.24
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	92.24
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	92.22
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	92.07
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.03
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	91.96
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	91.88
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	91.84
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.7
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	91.54
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	91.5
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	91.34
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.25
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	91.16
d2fh5b1	207	Signal recognition particle receptor beta-subunit	91.15
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	91.09
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	90.59
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	90.48
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	90.36
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	90.25
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	90.2
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	90.19
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	90.18
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	90.18
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	89.88
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	89.75
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	89.66
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	89.59
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	89.36
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	89.33
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	89.3
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	89.17
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	89.14
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	88.92
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	88.88
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	88.86
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	88.85
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	88.72
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	88.71
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	88.65
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	88.58
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	88.32
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	88.3
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	88.25
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	88.09
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	88.06
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	88.0
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	87.98
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	87.96
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	87.7
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	87.7
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	87.67
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	87.58
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	87.55
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	87.53
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	87.53
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	87.2
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	87.09
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	87.09
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	87.04
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	87.04
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	86.96
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	86.93
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	86.82
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	86.8
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	86.3
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	86.17
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	86.07
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	86.05
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	85.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	85.63
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	85.63
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	85.57
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	85.43
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	85.38
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	85.18
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	84.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	84.9
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	84.81
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	84.61
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	84.32
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	84.25
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	84.16
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	84.05
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	84.03
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	83.85
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	83.66
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	83.0
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	82.96
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	82.8
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	82.67
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	82.22
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	81.67
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	81.65
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	81.53
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	81.5
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	81.42
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	81.15
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	81.03
d1ls1a2	207	GTPase domain of the signal sequence recognition p	80.36

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.5e-47  Score=377.97  Aligned_cols=182  Identities=24%  Similarity=0.355  Sum_probs=159.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||+|+|+|+++|+     +|+|.+||+++...   ++++|||+|++.+|+.+||+||+.|.+..+   ..+
T Consensus        38 iGpsGaGKSTLl~~i~Gl~~p~-----sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~  109 (239)
T d1v43a3          38 LGPSGCGKTTTLRMIAGLEEPT-----EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFP  109 (239)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCC
T ss_pred             ECCCCChHHHHHHHHHcCCCCC-----CCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCC
Confidence            6999999999999999999998     89999999998653   356999999999999999999999887654   467


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      +++.+++++++++.+||++.+     ++++++|||||||||+|||||+.+|++|+|||||+|||+.++.++++.++++++
T Consensus       110 ~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~  184 (239)
T d1v43a3         110 KDEIDKRVRWAAELLQIEELL-----NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ  184 (239)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGT-----TSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChhhh-----cCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHH
Confidence            888999999999999996544     557889999999999999999999999999999999999999999999999975


Q ss_pred             -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                       .|+|+|++||++ .++.++|||+++|++|++++.|++++
T Consensus       185 ~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~e  223 (239)
T d1v43a3         185 KLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTE  223 (239)
T ss_dssp             HHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             hcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence             599999999996 57889999999999999999998776

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=7.2e-47  Score=375.02  Aligned_cols=182  Identities=28%  Similarity=0.430  Sum_probs=164.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++|+++...        ++++|||+|++.++|.+||+||+.|..+.+ 
T Consensus        37 iG~sGsGKSTll~~i~gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~-  110 (242)
T d1oxxk2          37 LGPSGAGKTTFMRIIAGLDVPS-----TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM-  110 (242)
T ss_dssp             ECSCHHHHHHHHHHHHTSSCCS-----EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS-
T ss_pred             ECCCCCcHHHHHHHHHcCcCCC-----CceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh-
Confidence            6999999999999999999998     89999999986321        346999999999999999999999987653 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..++++.+++++++++.+||++.+     ++++++|||||||||+|||||+.+|++|||||||+|||+.++.++++.|
T Consensus       111 --~~~~~~~~~~v~~~l~~~gL~~~~-----~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i  183 (242)
T d1oxxk2         111 --KMSKEEIRKRVEEVAKILDIHHVL-----NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV  183 (242)
T ss_dssp             --SCCHHHHHHHHHHHHHHTTCGGGT-----TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH
T ss_pred             --cCCHHHHHHHHHHHHhhcChHhhh-----hCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHH
Confidence              467888899999999999996544     5577899999999999999999999999999999999999999999999


Q ss_pred             HHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++.+ .|.|+|++||++ .++.++|||+++|++|++++.|++++
T Consensus       184 ~~l~~~~g~tvi~vTHd~-~~~~~~~dri~vm~~G~iv~~g~~~e  227 (242)
T d1oxxk2         184 KEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPED  227 (242)
T ss_dssp             HHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHhccCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99964 599999999996 47889999999999999999998766

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.4e-46  Score=373.27  Aligned_cols=182  Identities=29%  Similarity=0.440  Sum_probs=165.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++|+++...         ++++|||+|++.+++.+||+||+.+....+
T Consensus        35 iG~sGaGKSTll~~i~gl~~p~-----sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~  109 (240)
T d1g2912          35 LGPSGCGKTTTLRMIAGLEEPS-----RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR  109 (240)
T ss_dssp             ECSTTSSHHHHHHHHHTSSCCS-----EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred             ECCCCChHHHHHHHHhcCCCCC-----CCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc
Confidence            6999999999999999999987     89999999876321         246999999999999999999999998875


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                         ..++++.+++++++++.+||++.+     ++++++|||||||||+|||||+.+|++|||||||+|||+.++..+++.
T Consensus       110 ---~~~~~e~~~~v~~~l~~~~l~~~~-----~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~  181 (240)
T d1g2912         110 ---KVPRQEIDQRVREVAELLGLTELL-----NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE  181 (240)
T ss_dssp             ---TCCHHHHHHHHHHHHHHHTCGGGT-----TCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHHHHHcCChhHh-----cCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHH
Confidence               357788899999999999997654     457789999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       152 L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      |+++.++ |.|||++||++ .++..+||||++|++|++++.|++++
T Consensus       182 l~~l~~~~g~tvi~vTHd~-~~~~~~~drv~vm~~G~iv~~G~~~e  226 (240)
T d1g2912         182 LKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDE  226 (240)
T ss_dssp             HHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999755 99999999996 57889999999999999999999766

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.4e-47  Score=375.79  Aligned_cols=182  Identities=30%  Similarity=0.424  Sum_probs=130.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||||+|+|+++|+     +|+|.+||+++...   ++++|||+|++.+++.+||+||+.|+...+   ..+
T Consensus        32 iGpsGsGKSTLl~~i~Gl~~p~-----sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~  103 (232)
T d2awna2          32 VGPSGCGKSTLLRMIAGLETIT-----SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAK  103 (232)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCCS-----EEEEEESSSCCTTSCGGGTCEEEECSSCCC-----------------------
T ss_pred             ECCCCChHHHHHHHHhcCCCCC-----CCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHc---CCC
Confidence            6999999999999999999998     89999999987653   356999999999999999999999987754   345


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-  156 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-  156 (607)
                      +++.+++++++++.++|.+.+|     ++++.|||||||||+|||||+.+|++|+|||||+|||+.++.++++.|+++. 
T Consensus       104 ~~~~~~~v~~~l~~~~l~~~~~-----~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~  178 (232)
T d2awna2         104 KEVINQRVNQVAEVLQLAHLLD-----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK  178 (232)
T ss_dssp             -CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCChhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence            6677889999999999976554     4678899999999999999999999999999999999999999999999996 


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.|+|||++||++ .++..+|||+++|++|++++.|++++
T Consensus       179 ~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~e  217 (232)
T d2awna2         179 RLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLE  217 (232)
T ss_dssp             HSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            5699999999996 57889999999999999999999876

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.5e-46  Score=371.35  Aligned_cols=182  Identities=26%  Similarity=0.383  Sum_probs=165.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~   72 (607)
                      +||||||||||+|+|+|+.+|+     +|+|.++|+++...        ++++|||+|++.+++.+||+||+.+..+.+ 
T Consensus        37 iG~sGsGKSTLl~~i~Gl~~p~-----sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~-  110 (240)
T d3dhwc1          37 IGASGAGKSTLIRCVNLLERPT-----EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD-  110 (240)
T ss_dssp             EESTTSSHHHHHHHHTTSSCCS-----EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT-
T ss_pred             ECCCCCCHHHHHHHHcCCcccc-----CCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHc-
Confidence            6999999999999999999987     89999999987543        135999999999999999999999998765 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                        ..++++.+++++++|+.+||++.+     ++++++|||||||||+|||||+.+|++|||||||+|||+.++.++++.|
T Consensus       111 --~~~~~~~~~~v~~~L~~vgL~~~~-----~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l  183 (240)
T d3dhwc1         111 --NTPKDEVKRRVTELLSLVGLGDKH-----DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL  183 (240)
T ss_dssp             --TCCTTHHHHHHHHHHHHHSTTTTT-----SSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHcCCchhh-----hCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHH
Confidence              245677888999999999997655     4567899999999999999999999999999999999999999999999


Q ss_pred             HHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++.++ |.|||++||++ .++..+|||+++|++|++++.|++++
T Consensus       184 ~~l~~~~g~tvi~vTHdl-~~~~~~~dri~vl~~G~iv~~G~~~e  227 (240)
T d3dhwc1         184 KDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSE  227 (240)
T ss_dssp             HHHHHHHCCEEEEEBSCH-HHHHHHCSEEEEEETTEEEEEEETTT
T ss_pred             HHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence            999765 99999999996 57888999999999999999999988

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.9e-46  Score=369.83  Aligned_cols=180  Identities=26%  Similarity=0.456  Sum_probs=163.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||+|+|+|+++|+     +|+|.+||+++.+.   ++++|||+|++.++|.+||+||+.|+.+     ..+
T Consensus        30 iGpnGaGKSTll~~i~Gl~~p~-----~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~-----~~~   99 (240)
T d2onka1          30 LGPTGAGKSVFLELIAGIVKPD-----RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR-----NVE   99 (240)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT-----TSC
T ss_pred             ECCCCChHHHHHHHHHcCCCCC-----ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhc-----ccC
Confidence            6999999999999999999997     89999999988653   3569999999999999999999998642     356


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      +.+++++++++++.+||.+.+     ++++++|||||||||+|||||+++|++|+|||||+|||+.++..+.+.++++++
T Consensus       100 ~~~~~~~v~~~l~~~gl~~~~-----~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~  174 (240)
T d2onka1         100 RVERDRRVREMAEKLGIAHLL-----DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR  174 (240)
T ss_dssp             HHHHHHHHHHHHHTTTCTTTT-----TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHhhh-----hCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHH
Confidence            778888999999999997655     456789999999999999999999999999999999999999999999999975


Q ss_pred             -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                       .|.|||++||++ .++..+|||+++|++|++++.|++++
T Consensus       175 ~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~e  213 (240)
T d2onka1         175 EFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKE  213 (240)
T ss_dssp             HHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             hcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHH
Confidence             499999999996 47889999999999999999999876

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.5e-45  Score=362.24  Aligned_cols=183  Identities=29%  Similarity=0.415  Sum_probs=163.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc---------ceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA---------YKFAYVRQEDLFFSQLTVRETLSLAAELQ   71 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~---------~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~   71 (607)
                      +|||||||||||++|+|+.+|+     +|+|.++|+++....         +++|||+|++.+++.+||+||+.++...+
T Consensus        37 iG~sGsGKSTLl~~i~gl~~p~-----sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~  111 (230)
T d1l2ta_          37 MGPSGSGKSTMLNIIGCLDKPT-----EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK  111 (230)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred             ECCCCCCcchhhHhccCCCCCC-----cceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHh
Confidence            6999999999999999999987     899999999986531         24999999999999999999999998876


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344           72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA  151 (607)
Q Consensus        72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~  151 (607)
                      .....+.+++.+++.++++.+||.+    ...+.++.+|||||||||+|||||+++|++|+|||||+|||+.++.++++.
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~L~~----~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~  187 (230)
T d1l2ta_         112 YRGAMSGEERRKRALECLKMAELEE----RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL  187 (230)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHTTCCG----GGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHhhchhh----hhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHH
Confidence            5556678888889999999999963    233557889999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCC
Q 007344          152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA  194 (607)
Q Consensus       152 L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~  194 (607)
                      |+++.+ .|+|||++||++. .+ ++|||+++|++|++++.|++
T Consensus       188 l~~l~~~~g~tii~vTHd~~-~a-~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         188 LKKLNEEDGKTVVVVTHDIN-VA-RFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HHHHHHTTCCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred             HHHHHHhhCCEEEEECCCHH-HH-HhCCEEEEEECCEEEEeccC
Confidence            999975 5999999999974 44 78999999999999998865

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=8.6e-46  Score=364.72  Aligned_cols=179  Identities=27%  Similarity=0.452  Sum_probs=161.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS   77 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~   77 (607)
                      +||||||||||+|+|+|+.+|+     +|+|.++|+++.+.   ++++|||+|++.+|+.+||+||+.|+...+..   .
T Consensus        32 iGpsGaGKSTll~~l~Gl~~p~-----sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~---~  103 (229)
T d3d31a2          32 LGPTGAGKTLFLELIAGFHVPD-----SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---K  103 (229)
T ss_dssp             ECCCTHHHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---C
T ss_pred             ECCCCCcHHHHHHHHhcCcCCC-----CCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhccc---c
Confidence            6999999999999999999988     99999999998664   34699999999999999999999999887532   1


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                         .+++++++++.++|.+..|     +++.+|||||||||+|||||+++|++|||||||+|||+.++.++.+.++++++
T Consensus       104 ---~~~~~~~~l~~~~l~~~~~-----~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~  175 (229)
T d3d31a2         104 ---DPKRVLDTARDLKIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK  175 (229)
T ss_dssp             ---CHHHHHHHHHHTTCTTTTT-----SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHhcchhhHh-----CChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHh
Confidence               1346889999999976654     46778999999999999999999999999999999999999999999999975


Q ss_pred             -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                       .|.|||++||++ .++..+|||+++|++|++++.|++++
T Consensus       176 ~~g~tii~vtHd~-~~~~~~~drv~vm~~G~iv~~g~~~e  214 (229)
T d3d31a2         176 KNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEE  214 (229)
T ss_dssp             HTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred             cCCcEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence             599999999996 47888999999999999999999876

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=9.5e-44  Score=357.70  Aligned_cols=184  Identities=29%  Similarity=0.378  Sum_probs=163.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------------------cceEEEEccCCCCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------------------AYKFAYVRQEDLFFSQLTVRE   62 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------------------~~~i~yv~Q~~~l~~~lTV~E   62 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++|+++...                  ++++|||+|++.+++.+||.|
T Consensus        34 iG~sGsGKSTLl~~i~Gl~~p~-----~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~e  108 (258)
T d1b0ua_          34 IGSSGSGKSTFLRCINFLEKPS-----EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE  108 (258)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred             ECCCCCcHHHHHHHHHcCccCC-----CCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcch
Confidence            6999999999999999999987     89999999987421                  245999999999999999999


Q ss_pred             HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 007344           63 TLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDA  142 (607)
Q Consensus        63 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~  142 (607)
                      |+.+.....  ...+.++.++++.++++.+||.+..    .++++.+|||||||||+|||+|+.+|++|||||||+|||+
T Consensus       109 nv~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~----~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~  182 (258)
T d1b0ua_         109 NVMEAPIQV--LGLSKHDARERALKYLAKVGIDERA----QGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP  182 (258)
T ss_dssp             HHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHH----HTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCH
T ss_pred             hhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhh----hccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCH
Confidence            999875332  2356788888999999999996422    2456789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          143 FQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       143 ~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .++.++++.|++++++|+|||++|||+ .++..+||||++|++|++++.|++++
T Consensus       183 ~~~~~i~~ll~~l~~~g~til~vtHdl-~~~~~~adri~vm~~G~iv~~g~~~e  235 (258)
T d1b0ua_         183 ELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQ  235 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHhhhhhcccCCceEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            999999999999999999999999996 57889999999999999999999876

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.4e-43  Score=348.98  Aligned_cols=182  Identities=31%  Similarity=0.444  Sum_probs=166.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++|+++.+.    ++.+|||||++.+++++||.||+.|.+.++   ..
T Consensus        34 vG~nGaGKSTLl~~l~G~~~p~-----~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~  105 (238)
T d1vpla_          34 IGPNGAGKTTTLRIISTLIKPS-----SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---AS  105 (238)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CC
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-----CCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhc---CC
Confidence            6999999999999999999998     89999999987654    246999999999999999999999988775   34


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                      ++++.+++++++++.++|.+..+.     +++.|||||||||+||++|+++|++|+|||||+|||+.++.++.+++++++
T Consensus       106 ~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~  180 (238)
T d1vpla_         106 SSSEIEEMVERATEIAGLGEKIKD-----RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS  180 (238)
T ss_dssp             CHHHHHHHHHHHHHHHCCGGGGGS-----BGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCHHHHhh-----hhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence            577788889999999999766554     567899999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++|+|||++||++ .++..+||||++|++|++++.|++++
T Consensus       181 ~~g~tii~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~e  219 (238)
T d1vpla_         181 QEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEE  219 (238)
T ss_dssp             HTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999999999996 58889999999999999999999876

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=5.8e-43  Score=348.77  Aligned_cols=181  Identities=27%  Similarity=0.389  Sum_probs=157.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc------ceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA------YKFAYVRQEDLFFSQLTVRETLSLAAELQLPE   74 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~------~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~   74 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++|+++....      ..++|+||+..+|+.+||+||+.+.+..+.  
T Consensus        38 iGpnGaGKSTl~~~i~Gl~~p~-----~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~--  110 (240)
T d1ji0a_          38 IGANGAGKTTTLSAIAGLVRAQ-----KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK--  110 (240)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC--
T ss_pred             ECCCCCcHHHHHHHHhCCCCCC-----ccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC--
Confidence            6999999999999999999987     899999999986542      239999999999999999999988765432  


Q ss_pred             CCCHHHHHHHHHHHHHHc-CCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344           75 ILSVEERDEYVNSLLFKL-GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR  153 (607)
Q Consensus        75 ~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~  153 (607)
                        .++..++.++++++.+ +|.+.+     ++.+++|||||||||+|||||+.+|++|+|||||+|||+.++.++++.++
T Consensus       111 --~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~  183 (240)
T d1ji0a_         111 --DKEGIKRDLEWIFSLFPRLKERL-----KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ  183 (240)
T ss_dssp             --CSSHHHHHHHHHHHHCHHHHTTT-----TSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHHHhhChHHHH-----hCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHH
Confidence              2234455567777766 575444     44667899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++++|+|||+++|+. .++.++|||+++|++|++++.|++++
T Consensus       184 ~l~~~g~til~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~e  225 (240)
T d1ji0a_         184 KINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASE  225 (240)
T ss_dssp             HHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred             HHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999999999999996 57889999999999999999998876

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.1e-42  Score=350.00  Aligned_cols=185  Identities=28%  Similarity=0.372  Sum_probs=161.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc------ceEEEEccCCCCCCCCCHHHHHHHHHHccC--
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA------YKFAYVRQEDLFFSQLTVRETLSLAAELQL--   72 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~------~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~--   72 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++|+++....      ..++|+||++.+++.+||.||+.++...+.  
T Consensus        36 iG~nGaGKSTLl~~i~Gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~  110 (254)
T d1g6ha_          36 IGPNGSGKSTLINVITGFLKAD-----EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES  110 (254)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSC
T ss_pred             ECCCCCcHHHHHHHHHCCCcCC-----CcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhcccc
Confidence            6999999999999999999988     899999999986532      239999999999999999999988653321  


Q ss_pred             --------CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 007344           73 --------PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQ  144 (607)
Q Consensus        73 --------~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~  144 (607)
                              .....+++..+++.++++.+++.+.+|+     +++.|||||||||+|||||+.+|++|+|||||+|||+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~  185 (254)
T d1g6ha_         111 PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR-----KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL  185 (254)
T ss_dssp             HHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTS-----BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHH
T ss_pred             chhhhhhhcccccHHHHHHHHHHHHHhcCcchhccC-----chhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHH
Confidence                    1122345566788999999999765554     566899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          145 AEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       145 ~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +.++.+.+++++++|+|||+++|+.. ++.++||||++|++|++++.|++++
T Consensus       186 ~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~~G~iv~~g~~~e  236 (254)
T d1g6ha_         186 AHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE  236 (254)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEEeCCEEEEEecHHH
Confidence            99999999999999999999999975 7889999999999999999998876

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-40  Score=332.63  Aligned_cols=181  Identities=27%  Similarity=0.404  Sum_probs=148.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|+++|+     +|+|.+||++++..     +++++||+|++.+|+. ||+||+.++....    
T Consensus        46 vG~sGsGKSTLl~li~gl~~p~-----~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~g~~~~----  115 (251)
T d1jj7a_          46 VGPNGSGKSTVAALLQNLYQPT-----GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQK----  115 (251)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSS-BHHHHHHCSCSSC----
T ss_pred             ECCCCCcHHHHHHHHhcccCCC-----cCEEEECCEecchhhhHHHHHHhhhccccccccCc-chhhhhhhhhccc----
Confidence            6999999999999999999997     89999999998653     2459999999999874 9999998864321    


Q ss_pred             CCHHHHHH-----HHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           76 LSVEERDE-----YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        76 ~~~~~~~~-----~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      ....+..+     ...+.++  +|.+..++.++. ....|||||||||+|||||+++|+||+||||||+||+.++.++++
T Consensus       116 ~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~  192 (251)
T d1jj7a_         116 PTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDE-AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ  192 (251)
T ss_dssp             CCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCS-SCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHH--hccccchhhHhc-cCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHH
Confidence            12222211     1223343  344445666654 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .|+++.+ .|+|+|++||+++ .+ ..||||++|++|++++.|++++
T Consensus       193 ~l~~l~~~~~~Tvi~itH~l~-~~-~~aDrI~vl~~G~iv~~Gt~~e  237 (251)
T d1jj7a_         193 LLYESPERYSRSVLLITQHLS-LV-EQADHILFLEGGAIREGGTHQQ  237 (251)
T ss_dssp             HHHTCGGGGGCEEEEECSCHH-HH-HTCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHhhhcCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence            9999874 5899999999964 44 5699999999999999999876

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1.2e-40  Score=332.35  Aligned_cols=178  Identities=26%  Similarity=0.453  Sum_probs=147.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|+++|+     +|+|.+||.+++..     ++++|||+|++.+|+. ||+||+.+....    .
T Consensus        34 vG~sGsGKSTLl~ll~gl~~p~-----~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~----~  103 (242)
T d1mv5a_          34 AGPSGGGKSTIFSLLERFYQPT-----AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG----D  103 (242)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCS-----BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS----C
T ss_pred             ECCCCCCHHHHHHHHHHhhCCC-----CCEEEECCEEeccccHHHHHhheEEEccccccCCc-chhhheeccccc----c
Confidence            6999999999999999999987     89999999987653     3569999999999987 999999765321    2


Q ss_pred             CCHHHHHHHHHHHHHHcC-------CCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLG-------LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++..    +.++..+       +.+..++.+++ ....|||||||||+|||||+.+|+||+||||||+||+.++..+
T Consensus       104 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i  178 (242)
T d1mv5a_         104 YTDEDLW----QVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV  178 (242)
T ss_dssp             SCHHHHH----HHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHH
T ss_pred             cchhhHH----HHHHHHHhhhhhccCcccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHH
Confidence            2333322    2333322       33445566664 4678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++.|++++ +|+|+|+++|++. .+ ..||||++|++|++++.|++++
T Consensus       179 ~~~l~~l~-~~~Tvi~itH~l~-~~-~~~D~i~vl~~G~iv~~G~~~e  223 (242)
T d1mv5a_         179 QKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNE  223 (242)
T ss_dssp             HHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHH
T ss_pred             HHHHHHHc-CCCEEEEEECCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence            99999997 4899999999974 44 4599999999999999999876

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-40  Score=327.41  Aligned_cols=181  Identities=26%  Similarity=0.433  Sum_probs=147.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|+++|+     +|+|.+||+++...     +++++||+|++.+|+. ||+||+.+...     .
T Consensus        35 vG~sGsGKSTLl~ll~gl~~p~-----~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-Ti~eNi~~~~~-----~  103 (241)
T d2pmka1          35 VGRSGSGKSTLTKLIQRFYIPE-----NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANP-----G  103 (241)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTS-BHHHHHCTTST-----T
T ss_pred             ECCCCCCHHHHHHHHHhcCCCC-----CCEEEECCEEecccchhhhhceEEEEecccccCCc-cccccccccCc-----c
Confidence            6999999999999999999987     89999999998764     2469999999998865 99999987532     2


Q ss_pred             CCHHHHHHHHH--HHHHHc-CCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344           76 LSVEERDEYVN--SLLFKL-GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL  152 (607)
Q Consensus        76 ~~~~~~~~~v~--~~l~~l-gL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L  152 (607)
                      .+.++..+..+  .+.+.+ .+....++.++. ....|||||||||+|||||+++|+||+||||||+||+.++..+++.|
T Consensus       104 ~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~-~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l  182 (241)
T d2pmka1         104 MSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM  182 (241)
T ss_dssp             CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCC-CCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHH
Confidence            33333222211  112222 223445566654 56889999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +++.+ |+|+|++||++. .+ ..||+|++|++|++++.|++++
T Consensus       183 ~~l~~-~~Tvi~itH~l~-~~-~~~D~i~vl~~G~Iv~~G~~~e  223 (241)
T d2pmka1         183 HKICK-GRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKE  223 (241)
T ss_dssp             HHHHT-TSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHH
T ss_pred             HHHhC-CCEEEEEECCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence            99865 899999999975 44 6799999999999999999766

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2.3e-39  Score=325.09  Aligned_cols=180  Identities=25%  Similarity=0.396  Sum_probs=147.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+++|+|+++|+     +|+|.+||.++...     +++++||+|++.+++. |+++|+.++..    ..
T Consensus        47 vG~sGsGKSTLl~ll~gl~~p~-----~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~n~~~~~~----~~  116 (253)
T d3b60a1          47 VGRSGSGKSTIASLITRFYDID-----EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART----EE  116 (253)
T ss_dssp             EECTTSSHHHHHHHHTTTTCCS-----EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT----SC
T ss_pred             ECCCCChHHHHHHHHhcccCCC-----ccEEEECCcccchhhhhhhhheEEEEeeccccCCc-chhhhhhhcCc----cc
Confidence            6999999999999999999987     89999999998764     2459999999998875 99999987531    22


Q ss_pred             CCHHHHHHHH-----HHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344           76 LSVEERDEYV-----NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME  150 (607)
Q Consensus        76 ~~~~~~~~~v-----~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~  150 (607)
                      .+.++..+..     .+.++.+  .+-.++.+++ .+..|||||||||+|||||+++|+||+||||||+||+.++..|++
T Consensus       117 ~~~~~i~~a~~~~~l~~~i~~l--~~gl~t~~~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~  193 (253)
T d3b60a1         117 YSREQIEEAARMAYAMDFINKM--DNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA  193 (253)
T ss_dssp             CCHHHHHHHHHTTTCHHHHHHS--TTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhHHHHHHhc--cccchhhhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHH
Confidence            3433332211     1223332  2234566664 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .|+++.+ ++|+|++||++. .+ ..||+|++|++|++++.|++++
T Consensus       194 ~l~~l~~-~~Tvi~itH~l~-~~-~~~D~v~vl~~G~Iv~~G~~~e  236 (253)
T d3b60a1         194 ALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSE  236 (253)
T ss_dssp             HHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHhcc-CCEEEEEECCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence            9999865 899999999975 44 6799999999999999999876

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=2.5e-39  Score=324.56  Aligned_cols=177  Identities=29%  Similarity=0.460  Sum_probs=148.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|+++|+     +|+|.+||.++...     +++++||+|++.+|+. ||+||+.++..     .
T Consensus        50 vG~sGsGKSTLl~ll~gl~~p~-----~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-Ti~eNi~~g~~-----~  118 (255)
T d2hyda1          50 VGMSGGGKSTLINLIPRFYDVT-----SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----T  118 (255)
T ss_dssp             ECSTTSSHHHHHTTTTTSSCCS-----EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----S
T ss_pred             ECCCCCcHHHHHHHHHhcCCcc-----ccccccCCEEcccCCHHHhhheeeeeeccccCCCC-CHHHHHhccCc-----C
Confidence            5999999999999999999987     89999999998653     3469999999998875 99999987521     2


Q ss_pred             CCHHHHHHHHHHHHHHcCC-------CccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i  148 (607)
                      .+.++    +.++++..++       .+..|+.+++ ....||||||||++|||||+++|+||+||||||+||+.++..+
T Consensus       119 ~~~~~----~~~al~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i  193 (255)
T d2hyda1         119 ATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII  193 (255)
T ss_dssp             CCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHH
T ss_pred             CCHHH----HHHHHHHhCCHHHHHhccccccchhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence            23333    3344444443       3445677765 5678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      ++.|+++.+ ++|+|++||++. .+ ..||+|++|++|++++.|++++
T Consensus       194 ~~~l~~l~~-~~TvI~itH~~~-~~-~~~D~ii~l~~G~iv~~G~~~e  238 (255)
T d2hyda1         194 QEALDVLSK-DRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHRE  238 (255)
T ss_dssp             HHHHHHHTT-TSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHhc-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence            999999875 789999999975 34 6799999999999999999876

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-37  Score=308.46  Aligned_cols=176  Identities=27%  Similarity=0.383  Sum_probs=151.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc-----ceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA-----YKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI   75 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~-----~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~   75 (607)
                      +||||||||||+|+|+|+.+ +     +|+|.++|+++....     ...+|++|+.......++.+++.+...-     
T Consensus        31 iG~nGaGKSTLl~~l~Gl~~-~-----~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----   99 (231)
T d1l7vc_          31 VGPNGAGKSTLLARMAGMTS-G-----KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD-----   99 (231)
T ss_dssp             BCCTTSSHHHHHHHHHTSCC-C-----SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSC-----
T ss_pred             ECCCCCcHHHHHHHHhCCCC-C-----ceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccch-----
Confidence            69999999999999999754 4     799999999875432     2489999998776678999998875321     


Q ss_pred             CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhh-------CCCeEEEeCCCCCCCHHHHHHH
Q 007344           76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA-------SPSVIYADEPTTGLDAFQAEKV  148 (607)
Q Consensus        76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~-------~p~illLDEPtsGLD~~~~~~i  148 (607)
                         ..+.++++++++.++|.+..+     +.++.|||||||||+||++|++       +|+||+|||||+|||+.++..+
T Consensus       100 ---~~~~~~~~~~~~~~~l~~~~~-----~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i  171 (231)
T d1l7vc_         100 ---KTRTELLNDVAGALALDDKLG-----RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL  171 (231)
T ss_dssp             ---TTCHHHHHHHHHHTTCTTTTT-----SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHH
T ss_pred             ---hhHHHHHHHHHHhcCCHhHhC-----cChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHH
Confidence               123456888999999976554     4567899999999999999997       7799999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      .+.+++++++|+|||+++|++. ++..+|||+++|++|++++.|++++
T Consensus       172 ~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~G~iv~~G~~~e  218 (231)
T d1l7vc_         172 DKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREE  218 (231)
T ss_dssp             HHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEETTEECCCSBHHH
T ss_pred             HHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEECCHHH
Confidence            9999999999999999999964 7889999999999999999998776

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-37  Score=316.59  Aligned_cols=173  Identities=24%  Similarity=0.357  Sum_probs=139.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+|+|+|+++|+     +|+|.++|        +++||+|++.+++. ||+||+.++..      .....
T Consensus        68 vG~nGsGKSTLl~~i~Gl~~p~-----~G~I~~~g--------~i~~v~Q~~~l~~~-tv~eni~~~~~------~~~~~  127 (281)
T d1r0wa_          68 TGSTGSGKTSLLMLILGELEAS-----EGIIKHSG--------RVSFCSQFSWIMPG-TIKENIIFGVS------YDEYR  127 (281)
T ss_dssp             EESTTSSHHHHHHHHHTSSCCS-----EEEEECCS--------CEEEECSSCCCCSE-EHHHHHTTTSC------CCHHH
T ss_pred             ECCCCChHHHHHHHHhCCCcCC-----CcEEEECC--------EEEEEeccccccCc-eeecccccccc------ccchH
Confidence            5999999999999999999987     89999998        48999999999886 99999987532      22222


Q ss_pred             HHHHHHH---HHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344           81 RDEYVNS---LLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ  157 (607)
Q Consensus        81 ~~~~v~~---~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~  157 (607)
                      .++.++.   ......+.+..++.++. ....|||||||||+|||||+++|+||+|||||+|||+.+...+++.+.+...
T Consensus       128 ~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~  206 (281)
T d1r0wa_         128 YKSVVKACQLQQDITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM  206 (281)
T ss_dssp             HHHHHHHTTCHHHHTTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT
T ss_pred             HHHHHHHHHhHHHHHhchhhhhhhhhh-hccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhh
Confidence            2221111   11223444455555553 5678999999999999999999999999999999999999999986544445


Q ss_pred             cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344          158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD  196 (607)
Q Consensus       158 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~  196 (607)
                      +|+|+|+++|++.  ....||||++|++|++++.|++++
T Consensus       207 ~~~tvi~itH~~~--~l~~aDrI~vl~~G~i~~~Gt~~e  243 (281)
T d1r0wa_         207 ANKTRILVTSKME--HLRKADKILILHQGSSYFYGTFSE  243 (281)
T ss_dssp             TTSEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHHH
T ss_pred             CCCEEEEEechHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence            6899999999963  456799999999999999999876

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=4.6e-35  Score=284.02  Aligned_cols=165  Identities=23%  Similarity=0.310  Sum_probs=138.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE   80 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~   80 (607)
                      +||||||||||+|+|+|+++|+     +|+|.+||+++.+.+.+++|++|+..++..+|++|++.+.+.++... .++  
T Consensus        33 ~G~NGsGKSTLl~~i~gl~~p~-----~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~--  104 (200)
T d1sgwa_          33 HGPNGIGKTTLLKTISTYLKPL-----KGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK--  104 (200)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCH--
T ss_pred             ECCCCChHHHHHHHHhcccccC-----CCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCc-cCH--
Confidence            5999999999999999999997     89999999999877778999999999999999999999988775332 222  


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344           81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH  160 (607)
Q Consensus        81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~  160 (607)
                        +.+.+.++.+++.+..      +++++|||||||||+||++|+.+|++++|||||+|||+.++..+++.|+++.+++.
T Consensus       105 --~~~~~~l~~~~~~~~~------~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~  176 (200)
T d1sgwa_         105 --NEIMDALESVEVLDLK------KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG  176 (200)
T ss_dssp             --HHHHHHHHHTTCCCTT------SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHS
T ss_pred             --HHHHHHHHHcCCcccc------cccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCC
Confidence              3356677888875432      34668999999999999999999999999999999999999999999999986555


Q ss_pred             eEEEEecCChhHHHhhhcceeeecC
Q 007344          161 TVICSIHQPRGSVYFKFDDIVLLTE  185 (607)
Q Consensus       161 tvi~~~H~p~~~i~~~~D~v~lL~~  185 (607)
                      ++|+++|+..    .+||++..|++
T Consensus       177 ~~ii~~~~~l----~~~D~~~~l~~  197 (200)
T d1sgwa_         177 IVIISSREEL----SYCDVNENLHK  197 (200)
T ss_dssp             EEEEEESSCC----TTSSEEEEGGG
T ss_pred             EEEEEEechh----hhcchhhheee
Confidence            5555555432    46999998864

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.52  E-value=1.9e-16  Score=147.42  Aligned_cols=152  Identities=16%  Similarity=0.098  Sum_probs=97.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccC----CCCCCCCCHHHHHHHHHHccCCCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE----DLFFSQLTVRETLSLAAELQLPEIL   76 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~----~~l~~~lTV~E~l~~~~~~~~~~~~   76 (607)
                      +||||||||||+++|+|.++++     .|.+...+.+.....++.++..+.    .......+..+.      .+    .
T Consensus         6 ~G~~G~GKSTLl~~i~~~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----~   70 (178)
T d1ye8a1           6 TGEPGVGKTTLVKKIVERLGKR-----AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSK------KL----V   70 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHHGGG-----EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCS------SE----E
T ss_pred             ECCCCcHHHHHHHHHHhcCCCC-----cceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhh------hh----h
Confidence            5999999999999999999876     788888776544333333322111    000000000000      00    0


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344           77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA  156 (607)
Q Consensus        77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la  156 (607)
                                   ...+.         +.....+|+|+++|.++++++..+|+++++|||...  ......+.+.+.++.
T Consensus        71 -------------~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l  126 (178)
T d1ye8a1          71 -------------GSYGV---------NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIM  126 (178)
T ss_dssp             -------------TTEEE---------CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHH
T ss_pred             -------------hhhhc---------CcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHHh
Confidence                         00000         111224799999999999999999999999998443  334456666666654


Q ss_pred             -hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCC
Q 007344          157 -QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP  193 (607)
Q Consensus       157 -~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~  193 (607)
                       +.+.++|+++|+..  ....+|++..+.+|+++.-++
T Consensus       127 ~~~~~~il~~~h~~~--~~~~~~~i~~~~~~~i~~v~~  162 (178)
T d1ye8a1         127 HDPNVNVVATIPIRD--VHPLVKEIRRLPGAVLIELTP  162 (178)
T ss_dssp             TCTTSEEEEECCSSC--CSHHHHHHHTCTTCEEEECCT
T ss_pred             ccCCCEEEEEEccHH--HHHhhceEEEEeCCEEEEECC
Confidence             45789999999853  456789999999999987654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=4.7e-09  Score=109.30  Aligned_cols=75  Identities=21%  Similarity=0.266  Sum_probs=64.0

Q ss_pred             CCCCCHHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceee
Q 007344          107 VRGISGGEKKRLSLACEL----IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL  182 (607)
Q Consensus       107 ~~~LSGGerqRvsIa~aL----~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~l  182 (607)
                      .+.+|||||.++++|.-+    ..++++++||||+++||+..+..+.+.|++++..+.-+|++||+|  .+...+|+++.
T Consensus       330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~  407 (427)
T d1w1wa_         330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG  407 (427)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred             hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEE
Confidence            467899999998887654    356789999999999999999999999999876666799999997  57888999775


Q ss_pred             e
Q 007344          183 L  183 (607)
Q Consensus       183 L  183 (607)
                      +
T Consensus       408 V  408 (427)
T d1w1wa_         408 V  408 (427)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.95  E-value=8e-06  Score=80.86  Aligned_cols=78  Identities=26%  Similarity=0.295  Sum_probs=64.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhccee
Q 007344          106 KVRGISGGEKKRLSLACELI----ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIV  181 (607)
Q Consensus       106 ~~~~LSGGerqRvsIa~aL~----~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~  181 (607)
                      ....+|+|||+...++..++    .+++++++|||-++|+|.....+++.|+++++ +.-||++||.|  .+...+|+++
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~  292 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLH  292 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEE
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH--HHHHhcccEE
Confidence            35679999999988877643    46789999999999999999999999999875 57899999987  4567889986


Q ss_pred             ee--cCC
Q 007344          182 LL--TEG  186 (607)
Q Consensus       182 lL--~~G  186 (607)
                      .+  .+|
T Consensus       293 ~v~~~~g  299 (308)
T d1e69a_         293 GVTMVNG  299 (308)
T ss_dssp             EEEESSS
T ss_pred             EEEEeCC
Confidence            64  455

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.50  E-value=0.00015  Score=68.98  Aligned_cols=45  Identities=13%  Similarity=0.176  Sum_probs=37.1

Q ss_pred             hhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEecCC
Q 007344          125 IASPSVIYADEPTTGLDAFQAEKVME-ALRQLAQDGHTVICSIHQP  169 (607)
Q Consensus       125 ~~~p~illLDEPtsGLD~~~~~~i~~-~L~~la~~g~tvi~~~H~p  169 (607)
                      +++..++++||+.+|=|+.....+.. .++.|.+.+..++++||..
T Consensus       112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~  157 (224)
T d1ewqa2         112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF  157 (224)
T ss_dssp             CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred             CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech
Confidence            34567999999999999998888655 5566777788999999984

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=9.2e-05  Score=70.99  Aligned_cols=46  Identities=15%  Similarity=0.168  Sum_probs=35.9

Q ss_pred             hhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhc-CCeEEEEecCCh
Q 007344          125 IASPSVIYADEPTTGLDAFQAEKVME-ALRQLAQD-GHTVICSIHQPR  170 (607)
Q Consensus       125 ~~~p~illLDEPtsGLD~~~~~~i~~-~L~~la~~-g~tvi~~~H~p~  170 (607)
                      +++..++++||+.+|=++.....+.. .++.+..+ +..++++||...
T Consensus       118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~  165 (234)
T d1wb9a2         118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE  165 (234)
T ss_dssp             CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence            44556999999999999999988865 56677654 457888888753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0012  Score=58.08  Aligned_cols=20  Identities=50%  Similarity=0.526  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +|++|||||||++.|+..+.
T Consensus         8 tG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           8 AAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             ECCTTSCHHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHHH
Confidence            49999999999999997654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.85  E-value=0.0014  Score=62.00  Aligned_cols=21  Identities=43%  Similarity=0.594  Sum_probs=18.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      +|+||+|||||+|.|.|...-
T Consensus       101 ~G~SGVGKSTLiN~L~~~~~~  121 (225)
T d1u0la2         101 AGLSGVGKSSLLNAINPGLKL  121 (225)
T ss_dssp             ECSTTSSHHHHHHHHSTTCCC
T ss_pred             ECCCCCCHHHHHHhhcchhhh
Confidence            599999999999999986543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.001  Score=59.69  Aligned_cols=19  Identities=32%  Similarity=0.564  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|||||||||+|++|.-.+
T Consensus        30 ~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          30 SGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HSCCSHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999997543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.30  E-value=0.0024  Score=56.52  Aligned_cols=19  Identities=42%  Similarity=0.653  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|||||||.+.|+..+
T Consensus        13 ~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2          13 LGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             ECCTTSHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999999864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.15  E-value=0.0097  Score=56.98  Aligned_cols=44  Identities=20%  Similarity=0.264  Sum_probs=27.2

Q ss_pred             hhCCCeEEEeCC-----CCCC--CHHHHHHHHHHHHHHHh-cCCeEEEEecC
Q 007344          125 IASPSVIYADEP-----TTGL--DAFQAEKVMEALRQLAQ-DGHTVICSIHQ  168 (607)
Q Consensus       125 ~~~p~illLDEP-----tsGL--D~~~~~~i~~~L~~la~-~g~tvi~~~H~  168 (607)
                      -.+|+++++|=-     ..+-  +......+++.|+++|+ .+.+|++++|-
T Consensus       145 ~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~  196 (277)
T d1cr2a_         145 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL  196 (277)
T ss_dssp             TTCCSEEEEEEEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             ccCcceEEEcccccccccccccchhHHHHHHHHHHHHHhhhccccceeeccc
Confidence            347999999842     1111  12345567888999984 57777777663

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.0034  Score=54.22  Aligned_cols=19  Identities=53%  Similarity=0.793  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+||||||+-+.|+-.+
T Consensus         8 ~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           8 VGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             ECCTTSCHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999999765

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.09  E-value=0.0012  Score=62.67  Aligned_cols=20  Identities=45%  Similarity=0.712  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +|+||+|||||+|.|.|...
T Consensus       103 ~G~SGVGKSSLiN~L~~~~~  122 (231)
T d1t9ha2         103 AGQSGVGKSSLLNAISPELG  122 (231)
T ss_dssp             EESHHHHHHHHHHHHCC---
T ss_pred             ECCCCccHHHHHHhhccHhH
Confidence            59999999999999999654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.0033  Score=55.34  Aligned_cols=19  Identities=53%  Similarity=0.721  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+||||||+.+.|+.++
T Consensus        12 ~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_          12 MGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             ECSTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999999865

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0035  Score=55.37  Aligned_cols=22  Identities=45%  Similarity=0.670  Sum_probs=19.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMAS   22 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~   22 (607)
                      .||+|+|||||++.++..+...
T Consensus         7 tG~~GtGKTtl~~~i~~~l~~~   28 (189)
T d2i3ba1           7 TGPPGVGKTTLIHKASEVLKSS   28 (189)
T ss_dssp             ESCCSSCHHHHHHHHHHHHHHT
T ss_pred             ECCCCCcHHHHHHHHHHHHHHC
Confidence            4999999999999999987654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.04  E-value=0.0035  Score=55.07  Aligned_cols=19  Identities=47%  Similarity=0.555  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+||||||+.+.|+-.+
T Consensus        10 ~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_          10 TGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4999999999999998754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.83  E-value=0.005  Score=53.13  Aligned_cols=17  Identities=35%  Similarity=0.534  Sum_probs=14.9

Q ss_pred             CCCCCCcHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAG   17 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG   17 (607)
                      .|++|||||||.+.|..
T Consensus         8 ~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           8 IGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.82  E-value=0.0037  Score=56.42  Aligned_cols=20  Identities=35%  Similarity=0.612  Sum_probs=17.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +||||||||||++.|....+
T Consensus         8 ~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           8 SGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHHST
T ss_pred             ECCCCCCHHHHHHHHHhhCC
Confidence            59999999999999987654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.75  E-value=0.0032  Score=55.76  Aligned_cols=21  Identities=33%  Similarity=0.419  Sum_probs=18.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      +|++|||||||++.|...+..
T Consensus         7 ~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           7 VGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHHHHh
Confidence            599999999999998887654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=94.73  E-value=0.0047  Score=54.39  Aligned_cols=19  Identities=37%  Similarity=0.770  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+||||||+.+.|+-.+
T Consensus        11 ~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_          11 TGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             ECSTTSSHHHHHHHHHHHS
T ss_pred             EeCCCCCHHHHHHHHHHHh
Confidence            4999999999999999754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.68  E-value=0.0053  Score=54.04  Aligned_cols=19  Identities=42%  Similarity=0.573  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+||||||+.+.|+..+
T Consensus        10 ~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1          10 SGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             EECTTSCHHHHHHHHHTCS
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999999875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.60  E-value=0.006  Score=53.26  Aligned_cols=19  Identities=53%  Similarity=0.767  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+||||||+.+.|+..+
T Consensus         8 ~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           8 TGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             ECSTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHHc
Confidence            4999999999999999764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=94.60  E-value=0.005  Score=54.07  Aligned_cols=20  Identities=30%  Similarity=0.433  Sum_probs=18.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      .|++||||||+.+.|+..+.
T Consensus         9 ~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           9 NGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHHHHcC
Confidence            39999999999999999764

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.45  E-value=0.006  Score=53.61  Aligned_cols=20  Identities=30%  Similarity=0.315  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +|+|||||||+-+.|+-++.
T Consensus        12 ~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3          12 TGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             ECSTTSSHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHh
Confidence            49999999999999997763

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.43  E-value=0.0051  Score=55.83  Aligned_cols=19  Identities=32%  Similarity=0.527  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||+|.|+|..
T Consensus        29 vG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          29 AGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTC-
T ss_pred             ECCCCCCHHHHHHHhcCCC
Confidence            6999999999999999964

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.38  E-value=0.0042  Score=60.41  Aligned_cols=19  Identities=32%  Similarity=0.774  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|||||||||+|++|+-.+
T Consensus        30 vG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          30 VGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             ECCTTTCSTHHHHHHHHTS
T ss_pred             ECCCCCcHHHHHHHHHHHh
Confidence            5999999999999996543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.31  E-value=0.013  Score=52.37  Aligned_cols=19  Identities=32%  Similarity=0.553  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||+|.|+|..
T Consensus        14 iG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2          14 VGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             ECSTTSSHHHHHHHHHTST
T ss_pred             ECCCCCCHHHHHHHHHCCC
Confidence            6999999999999999853

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.15  Score=47.89  Aligned_cols=46  Identities=11%  Similarity=0.148  Sum_probs=33.2

Q ss_pred             HHhhCCCeEEEeCCCC---C--CCHHHHHHHHHHHHHHHh-cCCeEEEEecC
Q 007344          123 ELIASPSVIYADEPTT---G--LDAFQAEKVMEALRQLAQ-DGHTVICSIHQ  168 (607)
Q Consensus       123 aL~~~p~illLDEPts---G--LD~~~~~~i~~~L~~la~-~g~tvi~~~H~  168 (607)
                      .-..+|+++++|--++   +  -|......+++.|+++++ .|.+|+++.|.
T Consensus       128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~  179 (274)
T d1nlfa_         128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA  179 (274)
T ss_dssp             HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence            3457999999996543   1  266667788888888874 57788887664

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.10  E-value=0.0075  Score=54.04  Aligned_cols=19  Identities=58%  Similarity=0.597  Sum_probs=16.8

Q ss_pred             CCCCCcHHHHHHHHHcCcC
Q 007344            2 GPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~   20 (607)
                      ||+|||||||.+.|+-.+.
T Consensus        29 G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          29 GLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             ECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhc
Confidence            8999999999999987643

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.07  E-value=0.008  Score=54.43  Aligned_cols=20  Identities=50%  Similarity=0.758  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +||||||||||++.|+...+
T Consensus         7 ~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           7 SGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHHCT
T ss_pred             ECCCCCCHHHHHHHHHHhCC
Confidence            59999999999999987654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.97  E-value=0.0099  Score=52.47  Aligned_cols=19  Identities=32%  Similarity=0.387  Sum_probs=17.3

Q ss_pred             CCCCCcHHHHHHHHHcCcC
Q 007344            2 GPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~   20 (607)
                      |++||||||+.+.|+-++.
T Consensus         8 G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           8 GVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999987664

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.97  E-value=0.0073  Score=53.83  Aligned_cols=19  Identities=42%  Similarity=0.604  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||+|.|.|..
T Consensus         6 vG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           6 AGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEBTTSSHHHHHHHHHSCC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=93.83  E-value=0.0096  Score=52.54  Aligned_cols=19  Identities=53%  Similarity=0.700  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+.+.||..+
T Consensus         6 iG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           6 IGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999999865

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=93.81  E-value=0.0096  Score=52.86  Aligned_cols=19  Identities=42%  Similarity=0.531  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+-+.||-.+
T Consensus         8 ~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           8 VGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             ESCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            6999999999999999754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.78  E-value=0.01  Score=52.47  Aligned_cols=19  Identities=37%  Similarity=0.552  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||+|.|+|..
T Consensus         6 iG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           6 VGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             ECCTTSSHHHHHHHHHC--
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=93.78  E-value=0.0091  Score=51.44  Aligned_cols=19  Identities=37%  Similarity=0.385  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|++-.
T Consensus         6 vG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           6 VGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             ECSTTSSHHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999998743

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=93.68  E-value=0.0094  Score=51.90  Aligned_cols=19  Identities=47%  Similarity=0.760  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||+|.|+|..
T Consensus         7 vG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           7 AGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EESTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999874

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.63  E-value=0.44  Score=42.85  Aligned_cols=59  Identities=17%  Similarity=0.195  Sum_probs=36.7

Q ss_pred             hCCCeEEEeCCCCCC----CHHHHHHHH-HHHHHHHhcCCeEEEEecCChh--------HHHhhhcceeeec
Q 007344          126 ASPSVIYADEPTTGL----DAFQAEKVM-EALRQLAQDGHTVICSIHQPRG--------SVYFKFDDIVLLT  184 (607)
Q Consensus       126 ~~p~illLDEPtsGL----D~~~~~~i~-~~L~~la~~g~tvi~~~H~p~~--------~i~~~~D~v~lL~  184 (607)
                      .+|+++++|--+.-.    +.....+.+ ..++.+++.|.|++++.|....        .....+|.++.+.
T Consensus       124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~  195 (242)
T d1tf7a1         124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR  195 (242)
T ss_dssp             HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred             hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence            379999999765532    333333333 4444455779999999986532        3344567776663

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.63  E-value=0.01  Score=51.05  Aligned_cols=19  Identities=42%  Similarity=0.656  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.+..
T Consensus         6 iG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           6 LGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.61  E-value=0.011  Score=53.75  Aligned_cols=19  Identities=53%  Similarity=0.774  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||||||||||.+.|+-..
T Consensus         6 ~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           6 SGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhC
Confidence            5999999999999998754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=93.57  E-value=0.011  Score=55.00  Aligned_cols=19  Identities=47%  Similarity=0.667  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|+.|||||||++.|....
T Consensus         6 ~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           6 VGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             EcCCCCcHHHHHHHHHHHH
Confidence            4999999999999997543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.0097  Score=53.72  Aligned_cols=20  Identities=25%  Similarity=0.463  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +||||+|||||++.|....+
T Consensus         9 ~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           9 LGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHCT
T ss_pred             ECCCCCCHHHHHHHHHHhCC
Confidence            59999999999999986543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.48  E-value=0.023  Score=54.22  Aligned_cols=19  Identities=37%  Similarity=0.711  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||+|.|.|..
T Consensus        38 vG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          38 MGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EESTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            5999999999999999975

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.45  E-value=0.011  Score=53.70  Aligned_cols=19  Identities=47%  Similarity=0.749  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|||||||+|.|.|..
T Consensus         9 vG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           9 AGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             ECSTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.45  E-value=0.0079  Score=53.11  Aligned_cols=19  Identities=42%  Similarity=0.651  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|||||||++.|.+-.
T Consensus        19 vG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          19 LGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEETTSSHHHHHHHHSCC-
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999998854

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.44  E-value=0.01  Score=53.55  Aligned_cols=19  Identities=26%  Similarity=0.391  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+||||||+.+.|+-.+
T Consensus         9 ~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           9 SGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             EESTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5999999999999998653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.0073  Score=54.16  Aligned_cols=20  Identities=45%  Similarity=0.552  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +|++||||||+-+.|+-++.
T Consensus        25 ~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          25 TGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             ESSCHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            49999999999999997653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.38  E-value=0.25  Score=45.35  Aligned_cols=59  Identities=19%  Similarity=0.191  Sum_probs=39.2

Q ss_pred             hCCCeEEEeCCCC---CCCHHHHHHHHHHHHHHH-hcCCeEEEEecCC---------hhHHHhhhcceeeec
Q 007344          126 ASPSVIYADEPTT---GLDAFQAEKVMEALRQLA-QDGHTVICSIHQP---------RGSVYFKFDDIVLLT  184 (607)
Q Consensus       126 ~~p~illLDEPts---GLD~~~~~~i~~~L~~la-~~g~tvi~~~H~p---------~~~i~~~~D~v~lL~  184 (607)
                      .+|++++.|--+.   +.+.......+..|.+++ +.+.+++++.|..         ...+...+|-++.|.
T Consensus       115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~  186 (242)
T d1tf7a2         115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ  186 (242)
T ss_dssp             TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred             cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence            4689999987543   456666666666666665 5688988888742         122445677777774

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.29  E-value=0.013  Score=52.03  Aligned_cols=19  Identities=32%  Similarity=0.483  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+||||||+.+.|+-.+
T Consensus         6 ~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           6 MGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5999999999999998754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.29  E-value=0.0086  Score=53.68  Aligned_cols=18  Identities=39%  Similarity=0.619  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++++|||||+|.|+|.
T Consensus         7 iG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           7 VGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             ESSTTSSHHHHHHHSEEE
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999885

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.27  E-value=0.013  Score=51.58  Aligned_cols=19  Identities=47%  Similarity=0.609  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++||||||+-+.|+..+
T Consensus         7 iG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           7 VGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999999865

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.25  E-value=0.014  Score=51.54  Aligned_cols=18  Identities=56%  Similarity=0.798  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||+|.|.|.
T Consensus        11 iG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1          11 VGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             ECSSSSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999985

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.20  E-value=0.013  Score=50.75  Aligned_cols=20  Identities=40%  Similarity=0.531  Sum_probs=17.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +|.+|+|||||++.+.+...
T Consensus        11 vG~~~vGKSSLi~~~~~~~~   30 (169)
T d1upta_          11 LGLDGAGKTTILYRLQVGEV   30 (169)
T ss_dssp             ECSTTSSHHHHHHHHHHSSC
T ss_pred             ECCCCCCHHHHHHHHhCCCC
Confidence            59999999999999988654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.15  E-value=0.013  Score=58.95  Aligned_cols=16  Identities=38%  Similarity=1.041  Sum_probs=14.8

Q ss_pred             CCCCCCcHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLA   16 (607)
Q Consensus         1 lGpsGsGKSTLL~~La   16 (607)
                      +|||||||||+|.+|+
T Consensus        31 ~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          31 IGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999985

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.13  E-value=0.013  Score=55.46  Aligned_cols=20  Identities=35%  Similarity=0.464  Sum_probs=17.9

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      .||+|||||||.++|++.+.
T Consensus        38 ~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          38 GGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             ECCTTSCTHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHHhh
Confidence            49999999999999999653

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.07  E-value=0.015  Score=53.75  Aligned_cols=20  Identities=35%  Similarity=0.579  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +||||||||||.+.|.-..+
T Consensus         8 ~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           8 SAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             ECCTTSCHHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHhhCC
Confidence            59999999999999987654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.02  E-value=0.015  Score=52.59  Aligned_cols=19  Identities=32%  Similarity=0.476  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+||||||+.+.|+..+
T Consensus        14 ~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_          14 LGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             ECSTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999999854

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.99  E-value=0.013  Score=52.91  Aligned_cols=18  Identities=33%  Similarity=0.471  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +||+||||||+.+.|+-.
T Consensus        12 ~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_          12 LGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.78  E-value=0.017  Score=57.23  Aligned_cols=53  Identities=17%  Similarity=0.146  Sum_probs=32.8

Q ss_pred             HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-eEEEEecCChhHHHhhhcceeee
Q 007344          121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH-TVICSIHQPRGSVYFKFDDIVLL  183 (607)
Q Consensus       121 a~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~-tvi~~~H~p~~~i~~~~D~v~lL  183 (607)
                      -.+|=.+|+.++++|--.+   .+ .   +.++.+ ..|. .++.|.|-.+  .....+|+.-|
T Consensus       229 ~~~lR~~pd~iivgEiR~~---ea-~---~~l~a~-~tGh~g~~tT~Ha~s--~~~a~~Rl~~l  282 (323)
T d1g6oa_         229 KSCLRMRPDRIILGELRSS---EA-Y---DFYNVL-CSGHKGTLTTLHAGS--SEEAFIRLANM  282 (323)
T ss_dssp             HHHTTSCCSEEEESCCCST---HH-H---HHHHHH-HTTCSCEEEEECCSS--HHHHHHHHHHH
T ss_pred             HHHhccCCCcccCCccCch---hH-H---HHHHHH-HhcCCcEEEEECCCC--HHHHHHHHHHh
Confidence            3455568999999999742   22 2   233333 4565 5899999754  44555665443

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.72  E-value=0.02  Score=53.20  Aligned_cols=18  Identities=56%  Similarity=0.756  Sum_probs=16.6

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      ||+|+|||||.++|+..+
T Consensus        52 Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          52 GPPGVGKTTAALALAREL   69 (231)
T ss_dssp             SCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHH
Confidence            999999999999999854

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=92.68  E-value=0.02  Score=53.40  Aligned_cols=19  Identities=53%  Similarity=0.899  Sum_probs=17.3

Q ss_pred             CCCCCcHHHHHHHHHcCcC
Q 007344            2 GPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~   20 (607)
                      ||+|+||||+.++|+....
T Consensus        42 GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          42 GPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             SSTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCcHHHHHHHHHhccC
Confidence            9999999999999998654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.67  E-value=0.015  Score=52.55  Aligned_cols=18  Identities=50%  Similarity=0.564  Sum_probs=16.4

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      |+.||||||+++.|+..+
T Consensus        16 G~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          16 GNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CSTTSCHHHHHHTTGGGT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            899999999999998754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.64  E-value=0.02  Score=50.93  Aligned_cols=19  Identities=47%  Similarity=0.643  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||+|.|.|..
T Consensus        11 vG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1          11 VGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             ECSTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999964

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=92.57  E-value=0.019  Score=51.28  Aligned_cols=19  Identities=32%  Similarity=0.508  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+||||||+.+.|+-.+
T Consensus         6 ~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           6 MGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5999999999999999754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.53  E-value=0.021  Score=53.47  Aligned_cols=18  Identities=50%  Similarity=0.809  Sum_probs=16.8

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      ||+|+||||+.++|+...
T Consensus        59 GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          59 GPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             CSTTSSHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999999864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.52  E-value=0.014  Score=52.06  Aligned_cols=19  Identities=26%  Similarity=0.490  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||+|.|+|..
T Consensus         7 vG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           7 VGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             ECCGGGCHHHHHHHHCSSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999853

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=92.52  E-value=0.019  Score=50.17  Aligned_cols=19  Identities=37%  Similarity=0.629  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.|..
T Consensus         8 vG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           8 LGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             ECSTTSSHHHHHHHHTTCC
T ss_pred             ECCCCCCHHHHHHHHcCCC
Confidence            6999999999999998854

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.50  E-value=0.019  Score=50.74  Aligned_cols=20  Identities=35%  Similarity=0.451  Sum_probs=18.0

Q ss_pred             CCCCCcHHHHHHHHHcCcCC
Q 007344            2 GPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~~   21 (607)
                      |++||||||+.+.|+.++..
T Consensus         8 G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           8 GIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             ECTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999987753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.022  Score=52.19  Aligned_cols=18  Identities=28%  Similarity=0.457  Sum_probs=16.4

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      |++|||||||.+.|+-.+
T Consensus         9 G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           9 GGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             CSTTSSHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998765

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=92.47  E-value=0.021  Score=53.32  Aligned_cols=18  Identities=61%  Similarity=0.940  Sum_probs=16.7

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      ||+|+||||+.+++++..
T Consensus        42 GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          42 GPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999999854

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.40  E-value=0.021  Score=50.87  Aligned_cols=19  Identities=47%  Similarity=0.714  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+||||||+-+.|+-.+
T Consensus         6 ~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           6 LGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5999999999999999754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.022  Score=51.27  Aligned_cols=19  Identities=26%  Similarity=0.445  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+||||||..+.|+-.+
T Consensus         7 ~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           7 LGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999998643

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.24  E-value=0.021  Score=51.02  Aligned_cols=17  Identities=29%  Similarity=0.462  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAG   17 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG   17 (607)
                      +|++||||||+.+-++-
T Consensus        20 ~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          20 VGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             ECCTTSSHHHHHHHHTG
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998854

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.24  E-value=0.022  Score=51.43  Aligned_cols=19  Identities=32%  Similarity=0.399  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|||||||.+.|+..+
T Consensus         8 ~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           8 VGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5999999999999999754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.24  E-value=0.023  Score=50.77  Aligned_cols=18  Identities=39%  Similarity=0.641  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +||+||||||+.+.|+-.
T Consensus         8 ~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           8 IGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999975

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.22  E-value=0.025  Score=52.37  Aligned_cols=18  Identities=44%  Similarity=0.820  Sum_probs=16.6

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      ||+|+||||+.++|+..+
T Consensus        40 Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          40 GPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHH
Confidence            999999999999999754

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.07  E-value=0.02  Score=50.89  Aligned_cols=19  Identities=21%  Similarity=0.351  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+||||||..+.|+-.+
T Consensus         6 ~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           6 LGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EESTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999998643

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=92.03  E-value=0.025  Score=50.81  Aligned_cols=18  Identities=44%  Similarity=0.684  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +||+||||||.-+.|+-.
T Consensus         9 ~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           9 LGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999954

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.012  Score=52.12  Aligned_cols=19  Identities=42%  Similarity=0.592  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++++|||||+|.|.|..
T Consensus        22 vG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          22 AGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EECTTSSHHHHHTTTCCC-
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999998864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.88  E-value=0.022  Score=51.44  Aligned_cols=18  Identities=33%  Similarity=0.492  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +||+||||||+.+.|+-.
T Consensus        14 ~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          14 VGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999875

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.84  E-value=2  Score=40.31  Aligned_cols=18  Identities=28%  Similarity=0.484  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      .|..|.|||||.+.+...
T Consensus        50 ~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          50 HGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            389999999999988653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=91.70  E-value=0.024  Score=49.76  Aligned_cols=19  Identities=32%  Similarity=0.424  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|||||||++.|.+..
T Consensus        21 vG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          21 VGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             EESTTSSHHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999853

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.54  E-value=0.033  Score=51.01  Aligned_cols=18  Identities=39%  Similarity=0.800  Sum_probs=16.7

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      ||+||||||.-+.|+-.+
T Consensus        10 Gp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_          10 GPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             CSSCSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999999854

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=91.50  E-value=0.26  Score=49.78  Aligned_cols=53  Identities=23%  Similarity=0.274  Sum_probs=37.7

Q ss_pred             HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhccee
Q 007344          120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIV  181 (607)
Q Consensus       120 Ia~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~  181 (607)
                      +..+|=.+|++++..|..   |+.++...+    +.+..|+.|+.|.|-.+  .....+|++
T Consensus       220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl~  272 (401)
T d1p9ra_         220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRLR  272 (401)
T ss_dssp             HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHHH
T ss_pred             HHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc--hHhhhhhhh
Confidence            444556799999999987   555555443    56778999999999754  345556644

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=91.34  E-value=0.033  Score=50.43  Aligned_cols=19  Identities=37%  Similarity=0.627  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +||+||||||+-+.|+-.+
T Consensus        12 iG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1          12 MGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHHB
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5999999999999999753

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=91.25  E-value=0.031  Score=48.84  Aligned_cols=19  Identities=47%  Similarity=0.581  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+-.
T Consensus         8 ~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           8 VGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999887643

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.16  E-value=0.038  Score=50.98  Aligned_cols=18  Identities=50%  Similarity=0.663  Sum_probs=16.3

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      ||+|+||||+.++++..+
T Consensus        43 Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          43 GMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             CSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCchhhHHHHHHHH
Confidence            999999999999998754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.15  E-value=0.032  Score=50.75  Aligned_cols=19  Identities=37%  Similarity=0.356  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.|.+..
T Consensus         6 vG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           6 VGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            6999999999999998753

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.09  E-value=0.01  Score=51.65  Aligned_cols=19  Identities=42%  Similarity=0.560  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||+|.|+|..
T Consensus         6 iG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           6 VGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             ECCHHHHTCHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999864

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.59  E-value=0.05  Score=55.33  Aligned_cols=20  Identities=40%  Similarity=0.645  Sum_probs=18.0

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +|.+|+|||||+|.|.|...
T Consensus        62 ~G~~n~GKSSLiNaL~G~~~   81 (400)
T d1tq4a_          62 TGETGSGKSSFINTLRGIGN   81 (400)
T ss_dssp             EECTTSSHHHHHHHHHTCCT
T ss_pred             ECCCCCCHHHHHHHHhCCCc
Confidence            59999999999999999754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=90.48  E-value=0.038  Score=49.25  Aligned_cols=18  Identities=44%  Similarity=0.519  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|+..||||||+|.|+|.
T Consensus        11 iG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4          11 FGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EECTTSSHHHHHHHHHTT
T ss_pred             EeCCCCcHHHHHHHHHHh
Confidence            589999999999999975

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.36  E-value=0.076  Score=46.27  Aligned_cols=18  Identities=22%  Similarity=0.316  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+.
T Consensus        10 iG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1          10 LGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EESTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            599999999999997653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.25  E-value=0.031  Score=51.69  Aligned_cols=19  Identities=32%  Similarity=0.483  Sum_probs=17.4

Q ss_pred             CCCCCcHHHHHHHHHcCcC
Q 007344            2 GPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~   20 (607)
                      |+-||||||+++.|+..+.
T Consensus         9 G~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           9 GNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CSTTSSHHHHHTTTGGGCT
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.20  E-value=0.051  Score=49.98  Aligned_cols=41  Identities=7%  Similarity=0.111  Sum_probs=25.7

Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCCh
Q 007344          128 PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR  170 (607)
Q Consensus       128 p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~  170 (607)
                      .+++++||.- .+.......+.+.|.+..+ ...++++++++.
T Consensus       100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~  140 (227)
T d1sxjc2         100 FKLIILDEAD-AMTNAAQNALRRVIERYTK-NTRFCVLANYAH  140 (227)
T ss_dssp             CEEEEETTGG-GSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred             eEEEEEeccc-cchhhHHHHHHHHhhhccc-ceeeccccCcHH
Confidence            4699999964 6777777777777665432 234455555543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.19  E-value=0.048  Score=51.59  Aligned_cols=19  Identities=42%  Similarity=0.546  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||+|.++||...
T Consensus        46 ~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          46 EGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHhhcc
Confidence            3999999999999999853

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.18  E-value=0.044  Score=48.10  Aligned_cols=18  Identities=39%  Similarity=0.518  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+-
T Consensus        11 vG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_          11 IGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHcC
Confidence            699999999999988753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=90.18  E-value=0.054  Score=49.21  Aligned_cols=18  Identities=56%  Similarity=0.868  Sum_probs=16.9

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      ||+||||||+-+.|+..+
T Consensus        10 GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_          10 GPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             CCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999999865

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=89.88  E-value=0.054  Score=51.32  Aligned_cols=19  Identities=47%  Similarity=0.847  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||+|.++|++..
T Consensus        48 ~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          48 VGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             ECCTTSSHHHHHHHHHHHT
T ss_pred             ecCCCCChhHHHHHHHHHc
Confidence            3999999999999999854

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=89.75  E-value=0.041  Score=48.35  Aligned_cols=18  Identities=50%  Similarity=0.735  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+.
T Consensus        22 vG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          22 LGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EESTTSSHHHHHHHHCCS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999774

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.66  E-value=0.05  Score=53.22  Aligned_cols=19  Identities=42%  Similarity=0.674  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||+|.|+||...
T Consensus        55 ~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          55 IGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhhcc
Confidence            4999999999999999864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.59  E-value=0.053  Score=47.59  Aligned_cols=19  Identities=37%  Similarity=0.625  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|++|+|||||++.+.+..
T Consensus         8 vG~~~vGKSsLi~~~~~~~   26 (175)
T d1ky3a_           8 LGDSGVGKTSLMHRYVNDK   26 (175)
T ss_dssp             ECCTTSSHHHHHHHHHHSC
T ss_pred             ECCCCcCHHHHHHHHHcCC
Confidence            6999999999999987643

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.36  E-value=0.062  Score=51.08  Aligned_cols=18  Identities=39%  Similarity=0.754  Sum_probs=16.7

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      ||+|+|||+|.++++...
T Consensus        45 GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          45 GPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCTTSSHHHHHHHHHHHT
T ss_pred             cCCCCCchHHHHHHHHHh
Confidence            999999999999999853

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=89.33  E-value=0.067  Score=50.92  Aligned_cols=19  Identities=47%  Similarity=0.900  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||+|.++||...
T Consensus        51 ~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          51 VGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             eCCCCCCccHHHHHHHHHc
Confidence            3999999999999999854

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.30  E-value=0.063  Score=51.30  Aligned_cols=19  Identities=42%  Similarity=0.730  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||+|.++|++..
T Consensus        47 ~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          47 YGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             BCCTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCcchhHHHHHHHHh
Confidence            3999999999999999964

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.13  Score=45.62  Aligned_cols=19  Identities=26%  Similarity=0.464  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||++-+.+-.
T Consensus        11 lG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1          11 LGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             ECCTTTTHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHhCC
Confidence            6999999999999776643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=89.14  E-value=0.071  Score=49.01  Aligned_cols=19  Identities=53%  Similarity=0.534  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .|.||||||||.+.|.-.+
T Consensus        30 tGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          30 TGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4999999999999998654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=88.92  E-value=0.064  Score=55.24  Aligned_cols=41  Identities=32%  Similarity=0.507  Sum_probs=26.3

Q ss_pred             CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED   52 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~   52 (607)
                      +||+|+|||-|.+.||+.+.-.       -+..++...+    ..|||-.+-
T Consensus        55 iGPTGvGKTlLAr~LAk~l~VP-------Fv~~daT~fT----eaGYvG~DV   95 (443)
T d1g41a_          55 IGPTGVGKTEIARRLAKLANAP-------FIKVEATKFT----EVGYVGKEV   95 (443)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCC-------EEEEEGGGGC--------CCCCT
T ss_pred             ECCCCCCHHHHHHHHHHHhCCC-------EEEeecceee----ecceeecch
Confidence            6999999999999999976432       2444443332    278887763

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.88  E-value=0.064  Score=46.70  Aligned_cols=17  Identities=18%  Similarity=0.466  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAG   17 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG   17 (607)
                      +|++|+|||||++-+.+
T Consensus         8 iG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           8 VGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            69999999999997774

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.86  E-value=0.054  Score=47.30  Aligned_cols=18  Identities=33%  Similarity=0.514  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+-
T Consensus         9 iG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           9 VGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EESTTSSHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999988764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.85  E-value=0.063  Score=47.34  Aligned_cols=18  Identities=39%  Similarity=0.689  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+-
T Consensus        10 vG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1          10 IGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             ESSTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            699999999999987663

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=88.72  E-value=0.14  Score=44.67  Aligned_cols=17  Identities=29%  Similarity=0.432  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAG   17 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG   17 (607)
                      +|.+|+|||||++-+.+
T Consensus        10 vG~~~vGKTsli~~~~~   26 (168)
T d1u8za_          10 VGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999998765

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.71  E-value=0.081  Score=49.51  Aligned_cols=18  Identities=39%  Similarity=0.538  Sum_probs=16.8

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      ||+|+||||+++.++..+
T Consensus        53 GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          53 GRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             TCCSSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999999865

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.65  E-value=0.08  Score=49.23  Aligned_cols=21  Identities=33%  Similarity=0.428  Sum_probs=18.5

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      .||+|+||||+++.|+..+..
T Consensus        49 ~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          49 LGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             ECCTTSSHHHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHHHhc
Confidence            399999999999999987754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.58  E-value=0.068  Score=49.68  Aligned_cols=42  Identities=7%  Similarity=0.082  Sum_probs=28.6

Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCCh
Q 007344          127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR  170 (607)
Q Consensus       127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~  170 (607)
                      +.+++++||.-. |.......+.+.+.+- .....+|++++++.
T Consensus       131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~  172 (252)
T d1sxje2         131 RYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMS  172 (252)
T ss_dssp             CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSC
T ss_pred             CceEEEeccccc-cccccchhhhcccccc-cccccceeeecccc
Confidence            567999999854 7777766666666542 22345788888765

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.32  E-value=0.087  Score=47.48  Aligned_cols=19  Identities=42%  Similarity=0.735  Sum_probs=17.1

Q ss_pred             CCCCCcHHHHHHHHHcCcC
Q 007344            2 GPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~   20 (607)
                      |.-||||||+++.|...+.
T Consensus         7 G~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           7 GVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             CSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            8999999999999998664

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.30  E-value=0.062  Score=46.83  Aligned_cols=18  Identities=39%  Similarity=0.612  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++.+.+-
T Consensus         8 vG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           8 IGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EESTTSSHHHHHHHHHHC
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            699999999999988764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.25  E-value=0.082  Score=46.93  Aligned_cols=18  Identities=44%  Similarity=0.654  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+-
T Consensus        11 vG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1          11 LGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             ESCTTSSHHHHHHHHHCS
T ss_pred             ECCCCcCHHHHHHHHhcC
Confidence            599999999999999864

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.09  E-value=0.076  Score=46.70  Aligned_cols=18  Identities=33%  Similarity=0.630  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+-
T Consensus         9 vG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           9 IGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             ESSTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHhcC
Confidence            699999999999987654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.06  E-value=0.18  Score=43.87  Aligned_cols=18  Identities=28%  Similarity=0.532  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++-+.+-
T Consensus         8 vG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           8 FGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             ECCTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            699999999999998864

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=88.00  E-value=0.073  Score=52.58  Aligned_cols=20  Identities=35%  Similarity=0.649  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      .||+|||||||++.|...+.
T Consensus        60 tG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          60 TGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             EECTTSCHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            39999999999999987543

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=87.98  E-value=0.069  Score=52.27  Aligned_cols=38  Identities=21%  Similarity=0.360  Sum_probs=27.9

Q ss_pred             CCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCC
Q 007344            2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFS   56 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~   56 (607)
                      |++||||||+.+.|..++....                 ...++..+.+|+.+.+
T Consensus        87 G~sgSGKSTla~~L~~lL~~~~-----------------~~~~v~~Is~D~F~~~  124 (308)
T d1sq5a_          87 GSVAVGKSTTARVLQALLSRWP-----------------EHRRVELITTDGFLHP  124 (308)
T ss_dssp             ECTTSSHHHHHHHHHHHHTTST-----------------TCCCEEEEEGGGGBCC
T ss_pred             CCCCCCCcHHHHHHHHHHhhhc-----------------CCCceEEEeeeeeECC
Confidence            8999999999999988764220                 1134778888887765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.96  E-value=0.09  Score=45.91  Aligned_cols=18  Identities=28%  Similarity=0.521  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++-+.+-
T Consensus         8 iG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           8 FGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             ECCTTSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999987763

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.70  E-value=0.095  Score=45.82  Aligned_cols=20  Identities=30%  Similarity=0.594  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +|.+|+|||||++.+.+...
T Consensus         7 vG~~~vGKTsLi~~~~~~~~   26 (168)
T d2gjsa1           7 LGAPGVGKSALARIFGGVED   26 (168)
T ss_dssp             ECCTTSSHHHHHHHHHTC--
T ss_pred             ECCCCcCHHHHHHHHhCCcc
Confidence            59999999999999988643

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.70  E-value=0.11  Score=45.56  Aligned_cols=19  Identities=47%  Similarity=0.798  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||++.+.+..
T Consensus         9 vG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           9 IGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             ECCTTSSHHHHHHHHHCCC
T ss_pred             ECCCCcCHHHHHHHHHhCc
Confidence            6999999999999998864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.67  E-value=0.17  Score=45.34  Aligned_cols=19  Identities=37%  Similarity=0.573  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|+.|+|||||++.+.+-.
T Consensus        12 vG~~~vGKTsli~~l~~~~   30 (194)
T d2bcgy1          12 IGNSGVGKSCLLLRFSDDT   30 (194)
T ss_dssp             EESTTSSHHHHHHHHHHCC
T ss_pred             ECCCCcCHHHHHHHHhhCC
Confidence            6999999999999877543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.58  E-value=0.073  Score=46.66  Aligned_cols=18  Identities=33%  Similarity=0.582  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++.+.+-
T Consensus        11 vG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1          11 IGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EESTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            599999999999998864

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.55  E-value=0.17  Score=43.93  Aligned_cols=19  Identities=26%  Similarity=0.447  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||++-+.+..
T Consensus         9 vG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           9 LGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHSC
T ss_pred             ECCCCcCHHHHHHHHHhCC
Confidence            6999999999999988754

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.53  E-value=0.15  Score=44.66  Aligned_cols=18  Identities=28%  Similarity=0.433  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++-+.+-
T Consensus        12 vG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1          12 VGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EECTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            599999999999987753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=87.53  E-value=0.086  Score=47.05  Aligned_cols=16  Identities=44%  Similarity=0.675  Sum_probs=14.7

Q ss_pred             CCCCCcHHHHHHHHHc
Q 007344            2 GPSGSGKTTLLNVLAG   17 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG   17 (607)
                      |++||||||+.+.|.-
T Consensus        10 G~~gSGKstva~~l~~   25 (191)
T d1uf9a_          10 GNIGSGKSTVAALLRS   25 (191)
T ss_dssp             ECTTSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999999964

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.20  E-value=0.093  Score=46.25  Aligned_cols=19  Identities=37%  Similarity=0.606  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||++.+.+-.
T Consensus        13 vG~~~vGKTsli~~l~~~~   31 (177)
T d1x3sa1          13 IGESGVGKSSLLLRFTDDT   31 (177)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCcCHHHHHHHHHhCC
Confidence            5999999999999887643

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.09  E-value=0.097  Score=46.40  Aligned_cols=18  Identities=44%  Similarity=0.767  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++-+.+-
T Consensus         8 vG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           8 LGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             ECCTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            599999999999988753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.09  E-value=0.098  Score=45.30  Aligned_cols=18  Identities=33%  Similarity=0.429  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++-+.+-
T Consensus         8 iG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           8 IGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             ECCTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            699999999999988753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.04  E-value=0.16  Score=44.20  Aligned_cols=18  Identities=28%  Similarity=0.433  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++-+.+.
T Consensus        11 vG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1          11 VGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EECTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999987653

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=87.04  E-value=0.057  Score=47.84  Aligned_cols=18  Identities=44%  Similarity=0.589  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+-
T Consensus        23 vG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          23 LGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEETTSSHHHHHHHTCCS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999988653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=86.96  E-value=0.098  Score=48.63  Aligned_cols=19  Identities=21%  Similarity=0.538  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      .||+|+|||||++.++...
T Consensus        35 ~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          35 LGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             EESTTSSHHHHHHHHHHHH
T ss_pred             EcCCCCcHHHHHHHHHHHC
Confidence            3999999999999887644

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.93  E-value=0.11  Score=50.98  Aligned_cols=59  Identities=20%  Similarity=0.127  Sum_probs=36.9

Q ss_pred             hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEec----CChhHHHhhhcceeee
Q 007344          125 IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH----QPRGSVYFKFDDIVLL  183 (607)
Q Consensus       125 ~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H----~p~~~i~~~~D~v~lL  183 (607)
                      ..+|.+.+-.=||.|-...-+....+.+.-+...|.-+|++..    |-..++...+|..+++
T Consensus       109 ~~~~~~~ir~~~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v  171 (323)
T d2qm8a1         109 AIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVL  171 (323)
T ss_dssp             GGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEE
T ss_pred             hcccceeeccccccccccchhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhhcccceEEEE
Confidence            3456667777777777777777776666666555665555543    3344566667765555

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.82  E-value=0.1  Score=45.42  Aligned_cols=18  Identities=33%  Similarity=0.637  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++.+.+.
T Consensus        10 vG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1          10 IGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            699999999999988764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=86.80  E-value=0.052  Score=53.35  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=19.1

Q ss_pred             CCCCCCcHHHHHHHHHcCcCC
Q 007344            1 MGPSGSGKTTLLNVLAGQLMA   21 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~~   21 (607)
                      .||+|+|||||+|.+++++++
T Consensus        34 ~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          34 FGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             ECCGGGCTTHHHHHHHHHSCC
T ss_pred             ECCCCccHHHHHHHHHHhCCC
Confidence            499999999999999998864

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=86.30  E-value=0.11  Score=47.05  Aligned_cols=19  Identities=47%  Similarity=0.595  Sum_probs=17.0

Q ss_pred             CCCCCcHHHHHHHHHcCcC
Q 007344            2 GPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~   20 (607)
                      |+.||||||+.+.|+..+.
T Consensus         9 G~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           9 GLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             ECTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            8999999999999998654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=86.17  E-value=0.072  Score=46.77  Aligned_cols=18  Identities=39%  Similarity=0.481  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+-
T Consensus        18 vG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          18 LGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEETTSSHHHHHHHTTCC
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.07  E-value=0.099  Score=45.28  Aligned_cols=18  Identities=28%  Similarity=0.479  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++.+.+-
T Consensus         6 vG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           6 LGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EESTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            599999999999988764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.05  E-value=0.27  Score=42.60  Aligned_cols=18  Identities=17%  Similarity=0.466  Sum_probs=15.5

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++-+.+-
T Consensus         9 vG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           9 LGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            699999999999976654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.97  E-value=0.12  Score=45.27  Aligned_cols=18  Identities=33%  Similarity=0.663  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++-+.+.
T Consensus        12 vG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_          12 LGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             ECCTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            699999999999877653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.63  E-value=0.13  Score=44.74  Aligned_cols=18  Identities=28%  Similarity=0.396  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++.+.+-
T Consensus         9 vG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           9 LGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             ECCTTSCHHHHHHHHHHC
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            599999999999987653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.63  E-value=0.11  Score=45.80  Aligned_cols=19  Identities=37%  Similarity=0.443  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||++.+.+-.
T Consensus         8 vG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           8 VGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EESTTSSHHHHHHHHHHSC
T ss_pred             ECCCCcCHHHHHHHHHhCC
Confidence            5999999999999887643

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.57  E-value=0.13  Score=44.71  Aligned_cols=18  Identities=22%  Similarity=0.571  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++-+.+-
T Consensus        10 vG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1          10 LGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            699999999999998753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.43  E-value=0.085  Score=46.32  Aligned_cols=18  Identities=39%  Similarity=0.591  Sum_probs=5.5

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++.+.+.
T Consensus        12 vG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1          12 IGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             ECCCCC------------
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            699999999999977763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.38  E-value=0.13  Score=47.62  Aligned_cols=18  Identities=44%  Similarity=0.726  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      ||...||||||++.|.+.
T Consensus        11 iGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4          11 LGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             EeCCCccHHHHHHHHHhh
Confidence            699999999999999885

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.18  E-value=0.12  Score=45.35  Aligned_cols=17  Identities=35%  Similarity=0.712  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAG   17 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG   17 (607)
                      +|.+|+|||||++.+.+
T Consensus        11 vG~~~vGKTsll~~~~~   27 (174)
T d2bmea1          11 IGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999998765

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.97  E-value=0.17  Score=44.64  Aligned_cols=18  Identities=33%  Similarity=0.433  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      .||+|+|||||+.-++..
T Consensus        29 ~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          29 FGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            499999999998887764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.90  E-value=0.15  Score=44.63  Aligned_cols=18  Identities=28%  Similarity=0.445  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++-+.+-
T Consensus        10 vG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1          10 VGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             ECCTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            599999999999987763

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.81  E-value=0.14  Score=45.19  Aligned_cols=19  Identities=32%  Similarity=0.394  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||++-+.+..
T Consensus        11 iG~~~vGKTsli~~~~~~~   29 (183)
T d1mh1a_          11 VGDGAVGKTCLLISYTTNA   29 (183)
T ss_dssp             ECSTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHHhCC
Confidence            6999999999999887643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.61  E-value=0.15  Score=44.42  Aligned_cols=19  Identities=26%  Similarity=0.398  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.+|+|||||++-+.+-.
T Consensus        12 vG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_          12 LGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCcCHHHHHHHHHhCC
Confidence            6999999999999988543

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.32  E-value=0.16  Score=46.58  Aligned_cols=19  Identities=42%  Similarity=0.511  Sum_probs=17.1

Q ss_pred             CCCCCcHHHHHHHHHcCcC
Q 007344            2 GPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~   20 (607)
                      |+-||||||+.+.|+-.+.
T Consensus        10 G~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_          10 GLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             ESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCcHHHHHHHHHHHHH
Confidence            8899999999999998764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.25  E-value=0.16  Score=45.04  Aligned_cols=16  Identities=38%  Similarity=0.684  Sum_probs=14.7

Q ss_pred             CCCCCCcHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLA   16 (607)
Q Consensus         1 lGpsGsGKSTLL~~La   16 (607)
                      +|.+|+|||||++-+.
T Consensus         8 lG~~~vGKTsll~r~~   23 (200)
T d1zcba2           8 LGAGESGKSTFLKQMR   23 (200)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            6999999999999984

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=84.16  E-value=0.19  Score=45.62  Aligned_cols=17  Identities=47%  Similarity=0.708  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAG   17 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG   17 (607)
                      .|+.||||||+.+.+.-
T Consensus         8 TG~igSGKStv~~~l~~   24 (205)
T d1jjva_           8 TGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             ECSTTSCHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999999999863

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.05  E-value=0.091  Score=50.83  Aligned_cols=18  Identities=28%  Similarity=0.543  Sum_probs=13.5

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      |+|||||||+.+.|...+
T Consensus        11 G~SGSGKTTva~~l~~i~   28 (288)
T d1a7ja_          11 GSSGAGTSTVKHTFDQIF   28 (288)
T ss_dssp             SCC---CCTHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHH
Confidence            999999999999998765

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.03  E-value=0.17  Score=46.66  Aligned_cols=19  Identities=26%  Similarity=0.434  Sum_probs=16.7

Q ss_pred             CCCCCcHHHHHHHHHcCcC
Q 007344            2 GPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~   20 (607)
                      |+-||||||+++.|+-.+.
T Consensus         9 G~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           9 GNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             ECTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCcHHHHHHHHHHHHh
Confidence            7889999999999997654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.85  E-value=0.17  Score=46.23  Aligned_cols=19  Identities=32%  Similarity=0.357  Sum_probs=16.9

Q ss_pred             CCCCCcHHHHHHHHHcCcC
Q 007344            2 GPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~~   20 (607)
                      |+.||||||+.+.|+..+.
T Consensus        10 G~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_          10 GVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             ESTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            8999999999999988654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.66  E-value=0.1  Score=45.80  Aligned_cols=18  Identities=33%  Similarity=0.523  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|++|+|||||++.+.+-
T Consensus         9 vG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           9 VGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EECTTSSHHHHHHTTC--
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            599999999999987653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.00  E-value=0.19  Score=43.68  Aligned_cols=17  Identities=47%  Similarity=0.640  Sum_probs=14.9

Q ss_pred             CCCCCCcHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAG   17 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG   17 (607)
                      +|++|+|||||++.+.+
T Consensus        12 vG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1          12 VGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            69999999999997654

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.96  E-value=0.23  Score=45.59  Aligned_cols=95  Identities=9%  Similarity=0.001  Sum_probs=57.3

Q ss_pred             hhCCCeEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhh-hcceeeecCCeeeeeCCCCCc----h
Q 007344          125 IASPSVIYADEPTTG-LDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK-FDDIVLLTEGKLVYAGPARDE----P  198 (607)
Q Consensus       125 ~~~p~illLDEPtsG-LD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~-~D~v~lL~~G~iv~~G~~~~~----~  198 (607)
                      +.+.+++++|+--.= =+......+..++..+.+.|+.+|+++..+..++-.. -|=.--|+.|-++.-.|..+.    +
T Consensus        95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~~~~~iL  174 (213)
T d1l8qa2          95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNKTRFKII  174 (213)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHHHHHHHH
T ss_pred             HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEECCCcHHHHHHH
Confidence            567899999987442 3477788899999999889999999998876544211 111222456655554332221    2


Q ss_pred             hhHhhhcCCCCCCCCCHHHHHHH
Q 007344          199 LAYFSRFGYTCPDHVNPAEFLAD  221 (607)
Q Consensus       199 ~~~f~~~g~~~p~~~~~ad~~~~  221 (607)
                      ..+....|+..++  +..+|+..
T Consensus       175 ~~~a~~rgl~l~~--~v~~yl~~  195 (213)
T d1l8qa2         175 KEKLKEFNLELRK--EVIDYLLE  195 (213)
T ss_dssp             HHHHHHTTCCCCH--HHHHHHHH
T ss_pred             HHHHHHcCCCCCH--HHHHHHHH
Confidence            2334445555443  44555543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=82.80  E-value=0.25  Score=44.28  Aligned_cols=20  Identities=40%  Similarity=0.547  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +|.-.+|||||++.|+|...
T Consensus        11 iGhvd~GKSTL~~~L~g~~~   30 (195)
T d1kk1a3          11 VGHVDHGKTTLTKALTGVWT   30 (195)
T ss_dssp             ECSTTSSHHHHHHHHHTCCC
T ss_pred             EeccCCcHHHHHHHHHhhhh
Confidence            58889999999999998653

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.67  E-value=0.24  Score=47.72  Aligned_cols=18  Identities=39%  Similarity=0.571  Sum_probs=15.2

Q ss_pred             CCCCCcHHHHHHHHHcCc
Q 007344            2 GPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         2 GpsGsGKSTLL~~LaG~~   19 (607)
                      |+.|||||||.+.|.-.+
T Consensus        34 G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          34 GPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             CCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999998876543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.22  E-value=0.22  Score=45.74  Aligned_cols=16  Identities=31%  Similarity=0.655  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 007344            1 MGPSGSGKTTLLNVLA   16 (607)
Q Consensus         1 lGpsGsGKSTLL~~La   16 (607)
                      +|.+|+|||||++-+.
T Consensus        12 lG~~~vGKTsll~~~~   27 (221)
T d1azta2          12 LGAGESGKSTIVKQMR   27 (221)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            6999999999999874

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.67  E-value=0.21  Score=48.01  Aligned_cols=19  Identities=32%  Similarity=0.627  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.-+||||||+|+|.|..
T Consensus        30 vG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          30 VGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EECSSSSHHHHHHHHHTSC
T ss_pred             EeCCCCCHHHHHHHHhCCC
Confidence            5888999999999999975

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.65  E-value=0.2  Score=47.93  Aligned_cols=19  Identities=26%  Similarity=0.559  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHcCc
Q 007344            1 MGPSGSGKTTLLNVLAGQL   19 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~   19 (607)
                      +|.-.||||||+|+|+|.-
T Consensus        32 vG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          32 VGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEBTTSCHHHHHHHHHTSC
T ss_pred             EcCCCCCHHHHHHHHhCCC
Confidence            5888999999999999975

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.53  E-value=0.24  Score=42.93  Aligned_cols=18  Identities=28%  Similarity=0.497  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++-+.+-
T Consensus         9 vG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           9 LGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             ECSTTSSHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999987754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=81.50  E-value=0.26  Score=44.04  Aligned_cols=17  Identities=35%  Similarity=0.360  Sum_probs=14.6

Q ss_pred             CCCCCCcHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAG   17 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG   17 (607)
                      .|+||+|||||.-.|..
T Consensus        21 ~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          21 TGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EESSSSSHHHHHHHHHT
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999887765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=81.42  E-value=0.29  Score=43.66  Aligned_cols=18  Identities=33%  Similarity=0.399  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      .|+||+|||||.-.|..+
T Consensus        20 ~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          20 TGDSGVGKSETALELVQR   37 (176)
T ss_dssp             ECCTTSCHHHHHHHHHHT
T ss_pred             EeCCCCCHHHHHHHHHHc
Confidence            499999999998877653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.15  E-value=0.21  Score=44.23  Aligned_cols=18  Identities=39%  Similarity=0.514  Sum_probs=15.5

Q ss_pred             CCCCCCcHHHHHHHHHcC
Q 007344            1 MGPSGSGKTTLLNVLAGQ   18 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~   18 (607)
                      +|.+|+|||||++.+..-
T Consensus        15 vG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          15 VGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EECTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhhC
Confidence            599999999999887653

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=81.03  E-value=0.31  Score=44.22  Aligned_cols=17  Identities=47%  Similarity=0.671  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHc
Q 007344            1 MGPSGSGKTTLLNVLAG   17 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG   17 (607)
                      .|+.||||||..+++..
T Consensus         9 tG~igSGKStv~~~l~~   25 (208)
T d1vhta_           9 TGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCcCCHHHHHHHHHH
Confidence            49999999999999974

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=80.36  E-value=0.29  Score=44.75  Aligned_cols=20  Identities=45%  Similarity=0.403  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHcCcC
Q 007344            1 MGPSGSGKTTLLNVLAGQLM   20 (607)
Q Consensus         1 lGpsGsGKSTLL~~LaG~~~   20 (607)
                      +||+|+||||.+-=||.+..
T Consensus        16 vGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2          16 VGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             ECCTTTTHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            59999999998888887653