Citrus Sinensis ID: 007360
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 606 | 2.2.26 [Sep-21-2011] | |||||||
| Q680Q4 | 884 | E3 SUMO-protein ligase SI | yes | no | 0.985 | 0.675 | 0.715 | 0.0 | |
| Q6L4L4 | 875 | E3 SUMO-protein ligase SI | yes | no | 0.945 | 0.654 | 0.590 | 0.0 | |
| Q6ASW7 | 813 | E3 SUMO-protein ligase SI | no | no | 0.864 | 0.644 | 0.574 | 0.0 | |
| O94451 | 727 | E3 SUMO-protein ligase pl | yes | no | 0.255 | 0.213 | 0.286 | 3e-16 | |
| Q8CIE2 | 920 | Zinc finger MIZ domain-co | yes | no | 0.361 | 0.238 | 0.275 | 5e-16 | |
| Q8NF64 | 920 | Zinc finger MIZ domain-co | yes | no | 0.361 | 0.238 | 0.275 | 9e-16 | |
| O88907 | 651 | E3 SUMO-protein ligase PI | no | no | 0.339 | 0.316 | 0.265 | 2e-14 | |
| Q6P1E1 | 1072 | Zinc finger MIZ domain-co | no | no | 0.363 | 0.205 | 0.266 | 3e-14 | |
| Q9ULJ6 | 1067 | Zinc finger MIZ domain-co | no | no | 0.363 | 0.206 | 0.266 | 3e-14 | |
| O75925 | 651 | E3 SUMO-protein ligase PI | no | no | 0.199 | 0.185 | 0.320 | 5e-14 |
| >sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2 | Back alignment and function desciption |
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Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/601 (71%), Positives = 506/601 (84%), Gaps = 4/601 (0%)
Query: 1 MDLIASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPV 60
MDL A+CKEKL++FRIKELKDVLTQLGLSKQGKKQ+LVDRIL +LSD+Q +++ +KK+ V
Sbjct: 1 MDLEANCKEKLSYFRIKELKDVLTQLGLSKQGKKQELVDRILTLLSDEQAARLLSKKNTV 60
Query: 61 SKEEVAKLVDDTHRKLQVSVAPDLASKGGQGVSNSSNIKIKGEMDDYIQSDTKVCCPCGS 120
+KE VAKLVDDT+RK+QVS A DLASKG Q S++SN+K+KGE +D Q + KV C CG+
Sbjct: 61 AKEAVAKLVDDTYRKMQVSGASDLASKG-QVSSDTSNLKVKGEPEDPFQPEIKVRCVCGN 119
Query: 121 SLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFWVTIGH 180
SLET+SMI+CEDPRC VWQH+ CVI+P+KP +GNPP+PE FYCEICRL+RADPFWVT+ H
Sbjct: 120 SLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTRADPFWVTVAH 179
Query: 181 PLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQEYDVQAWCMLLNDKVPFRMQ 240
PL P++LT T IP DG + + +E+TF ITRADKDLL+K EYDVQAWCMLLNDKV FRMQ
Sbjct: 180 PLSPVRLTATTIPNDGASTMQSVERTFQITRADKDLLAKPEYDVQAWCMLLNDKVLFRMQ 239
Query: 241 WPQYADLQVNGVPVRAINRPGSQLLGANGRDDGPIITPWTKDGINKIVLTGCDARIFCLG 300
WPQYADLQVNGVPVRAINRPG QLLG NGRDDGPIIT +DG+N+I L+G D RIFC G
Sbjct: 240 WPQYADLQVNGVPVRAINRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVRIFCFG 299
Query: 301 VRIVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGV 360
VR+VKRR++QQVLNLIP+E +GE FEDAL RV RC+GGG DNADSDSD+EVVAD GV
Sbjct: 300 VRLVKRRTLQQVLNLIPEEGKGETFEDALARVRRCIGGGGGDDNADSDSDIEVVADFFGV 359
Query: 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPY 420
NLRCPMSGSRIKVAGRF PCVHMGCFDLDVFVELNQRSRKWQCPICL+NYS+E++I+DPY
Sbjct: 360 NLRCPMSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPY 419
Query: 421 FNRITSKMRNCGEDITELEVKPDGSWRVKTRSESDRREIGDLASWHFPDGSLCAPAGGED 480
FNRITSKM++C E++TE+EVKPDGSWRVK + ES+RRE+G+L+ WH PDGSLC P+ +
Sbjct: 420 FNRITSKMKHCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLC-PSAVDI 478
Query: 481 KPKVEMLKHVRQEGVSEGHIGLKLGIRKNRNGLWEVSKPEDMNGSSGSRLQEKFENHDLK 540
K K+EML V+QEG S+G LKLGIRKNRNG+WEVSKP + NG S S QEK +
Sbjct: 479 KRKMEMLP-VKQEGYSDGPAPLKLGIRKNRNGIWEVSKP-NTNGLSSSNRQEKVGYQEKN 536
Query: 541 VIPMSSSATGSGRDGEDASVNQDVGGTFDFTNNGIEHDSMSLNVDPTYAFADRNPCAPVG 600
+IPMSSSATGSGRDG+DASVNQD GTFDF NG+E DS+S+NVD Y F DRN G
Sbjct: 537 IIPMSSSATGSGRDGDDASVNQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGG 596
Query: 601 N 601
N
Sbjct: 597 N 597
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E3 SUMO protein ligase involved in regulation processes. Mediates SUMO/ attachment to PHR1, a MYB transcriptional activator controlling the phosphate deficiency responses. Functions as an upstream negative regulator of salicylic acid (SA) accumulation and subsequent SA-mediated systemic acquired resistance (SAR) signaling. Probably not involved in jasmonic acid (JA)-mediated defense response. Participates in abiotic stress-induced sumoylation. Controls heat shock-induced SUMO1 and SUMO2 conjugation and facilitates basal thermotolerance. Involved in freezing tolerance by mediating sumoylation of ICE1, a transcription activator of the cold signaling regulator CBF3/DREB1A. Acts as positive regulator of drought stress tolerance. Acts as floral repressor that promotes FLC expression by repressing FLD activity through sumoylation. Acts as negative regulator of abscisic acid (ABA) signaling through ABI5 sumoylation. Mediates sumoylation of SCE1, GTE3 and GTE5. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q6L4L4|SIZ1_ORYSJ E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp. japonica GN=SIZ1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6ASW7|SIZ2_ORYSJ E3 SUMO-protein ligase SIZ2 OS=Oryza sativa subsp. japonica GN=SIZ2 PE=2 SV=1 | Back alignment and function description |
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| >sp|O94451|PLI1_SCHPO E3 SUMO-protein ligase pli1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pli1 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q8CIE2|ZMIZ2_MOUSE Zinc finger MIZ domain-containing protein 2 OS=Mus musculus GN=Zmiz2 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8NF64|ZMIZ2_HUMAN Zinc finger MIZ domain-containing protein 2 OS=Homo sapiens GN=ZMIZ2 PE=1 SV=2 | Back alignment and function description |
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| >sp|O88907|PIAS1_MOUSE E3 SUMO-protein ligase PIAS1 OS=Mus musculus GN=Pias1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6P1E1|ZMIZ1_MOUSE Zinc finger MIZ domain-containing protein 1 OS=Mus musculus GN=Zmiz1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9ULJ6|ZMIZ1_HUMAN Zinc finger MIZ domain-containing protein 1 OS=Homo sapiens GN=ZMIZ1 PE=1 SV=3 | Back alignment and function description |
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| >sp|O75925|PIAS1_HUMAN E3 SUMO-protein ligase PIAS1 OS=Homo sapiens GN=PIAS1 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 606 | ||||||
| 255570825 | 876 | sumo ligase, putative [Ricinus communis] | 0.983 | 0.680 | 0.792 | 0.0 | |
| 224132486 | 636 | predicted protein [Populus trichocarpa] | 0.971 | 0.926 | 0.763 | 0.0 | |
| 449459066 | 869 | PREDICTED: E3 SUMO-protein ligase SIZ1-l | 0.968 | 0.675 | 0.746 | 0.0 | |
| 224104633 | 700 | predicted protein [Populus trichocarpa] | 0.971 | 0.841 | 0.732 | 0.0 | |
| 225435251 | 876 | PREDICTED: E3 SUMO-protein ligase SIZ1-l | 0.978 | 0.676 | 0.739 | 0.0 | |
| 297819032 | 873 | predicted protein [Arabidopsis lyrata su | 0.986 | 0.684 | 0.721 | 0.0 | |
| 357472339 | 882 | E3 SUMO-protein ligase SIZ1 [Medicago tr | 0.986 | 0.678 | 0.724 | 0.0 | |
| 297793601 | 898 | ATSIZ1/SIZ1 [Arabidopsis lyrata subsp. l | 0.985 | 0.664 | 0.725 | 0.0 | |
| 356539120 | 879 | PREDICTED: E3 SUMO-protein ligase SIZ1-l | 0.986 | 0.680 | 0.734 | 0.0 | |
| 356542555 | 880 | PREDICTED: E3 SUMO-protein ligase SIZ1-l | 0.986 | 0.679 | 0.734 | 0.0 |
| >gi|255570825|ref|XP_002526365.1| sumo ligase, putative [Ricinus communis] gi|223534324|gb|EEF36036.1| sumo ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 972 bits (2513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/602 (79%), Positives = 525/602 (87%), Gaps = 6/602 (0%)
Query: 1 MDLIASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPV 60
MDL+ SCK+KLA+FRIKELKDVLTQLGLSKQGKKQDLVDRILA+L+D+QV K AKKS V
Sbjct: 1 MDLVTSCKDKLAYFRIKELKDVLTQLGLSKQGKKQDLVDRILAVLTDEQVPKTSAKKSVV 60
Query: 61 SKEEVAKLVDDTHRKLQVSVAPDLASKGGQGVSNSSNIKIKGEMDDYIQSDTKVCCPCGS 120
KEEVAKLVDD +RK+QVS A DLASKG +GV SS IKGE+DD DTKV CPCGS
Sbjct: 61 GKEEVAKLVDDIYRKMQVSGATDLASKG-EGVLESSKPVIKGEIDDSFHFDTKVRCPCGS 119
Query: 121 SLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFWVTIGH 180
SLETESMIKCEDPRC VWQH+ CVIIPEKP E P VP+LFYCEICRL RADPFWV++ H
Sbjct: 120 SLETESMIKCEDPRCRVWQHIGCVIIPEKPMEAIPQVPDLFYCEICRLCRADPFWVSVAH 179
Query: 181 PLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQEYDVQAWCMLLNDKVPFRMQ 240
PLYP+KLTT NI DG+ P + EKTF +TRADKDLL+KQEYDVQAWCMLLNDKVPFRMQ
Sbjct: 180 PLYPVKLTT-NIQADGSTPVQSAEKTFHLTRADKDLLAKQEYDVQAWCMLLNDKVPFRMQ 238
Query: 241 WPQYADLQVNGVPVRAINRPGSQLLGANGRDDGPIITPWTKDGINKIVLTGCDARIFCLG 300
WPQYADLQVNGVPVRAINRPGSQLLG NGRDDGPIITP TKDGINKI L GCDARIFCLG
Sbjct: 239 WPQYADLQVNGVPVRAINRPGSQLLGINGRDDGPIITPCTKDGINKISLNGCDARIFCLG 298
Query: 301 VRIVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGV 360
VRIVKRR+VQQ+LN+IPKES+GE FEDAL RVCRCVGGG AADNADSDSDLEVVADS V
Sbjct: 299 VRIVKRRTVQQILNMIPKESDGERFEDALARVCRCVGGG-AADNADSDSDLEVVADSFAV 357
Query: 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPY 420
NLRCPMSGSR+KVAGRFKPC HMGCFDL+VF+E+NQRSRKWQCP+CL+NYSLEN+IIDPY
Sbjct: 358 NLRCPMSGSRMKVAGRFKPCAHMGCFDLEVFLEMNQRSRKWQCPVCLKNYSLENVIIDPY 417
Query: 421 FNRITSKMRNCGEDITELEVKPDGSWRVKTRSESDRREIGDLASWHFPDGSLCAPAGGED 480
FNR+TSKM++CGEDITE+EVKPDGSWR KT+SE++RR++G+LA WH PDGSLC P GE
Sbjct: 418 FNRVTSKMQHCGEDITEIEVKPDGSWRAKTKSEAERRDVGELAQWHNPDGSLCVPISGEH 477
Query: 481 KPKVEMLKHVRQEGVSEGH--IGLKLGIRKNRNGLWEVSKPEDMN-GSSGSRLQEKFENH 537
K KVEM K ++QEG SEG+ GLKLGIRKNRNG WEVSKPED+N SSG+RL E+FE
Sbjct: 478 KSKVEMEKQIKQEGNSEGYNGTGLKLGIRKNRNGFWEVSKPEDVNTSSSGNRLPERFEII 537
Query: 538 DLKVIPMSSSATGSGRDGEDASVNQDVGGTFDFTNNGIEHDSMSLNVDPTYAFADRNPCA 597
+ KVIPMSSSATGSGRDGED SVNQD GG FDFTNNGIE DS+ LNVD TY F DRN A
Sbjct: 538 EQKVIPMSSSATGSGRDGEDPSVNQDGGGNFDFTNNGIELDSLPLNVDSTYGFPDRNFSA 597
Query: 598 PV 599
PV
Sbjct: 598 PV 599
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132486|ref|XP_002328293.1| predicted protein [Populus trichocarpa] gi|222837808|gb|EEE76173.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449459066|ref|XP_004147267.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Cucumis sativus] gi|449511458|ref|XP_004163961.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224104633|ref|XP_002313507.1| predicted protein [Populus trichocarpa] gi|222849915|gb|EEE87462.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225435251|ref|XP_002284945.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297819032|ref|XP_002877399.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297323237|gb|EFH53658.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|357472339|ref|XP_003606454.1| E3 SUMO-protein ligase SIZ1 [Medicago truncatula] gi|355507509|gb|AES88651.1| E3 SUMO-protein ligase SIZ1 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297793601|ref|XP_002864685.1| ATSIZ1/SIZ1 [Arabidopsis lyrata subsp. lyrata] gi|297310520|gb|EFH40944.1| ATSIZ1/SIZ1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356539120|ref|XP_003538048.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356542555|ref|XP_003539732.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 606 | ||||||
| FB|FBgn0003612 | 640 | Su(var)2-10 "Suppressor of var | 0.262 | 0.248 | 0.271 | 6.6e-15 | |
| ZFIN|ZDB-GENE-040426-2734 | 508 | pias4a "protein inhibitor of a | 0.211 | 0.251 | 0.290 | 1.3e-14 | |
| RGD|1308737 | 228 | Pias4 "protein inhibitor of ac | 0.295 | 0.785 | 0.265 | 4.2e-14 | |
| ZFIN|ZDB-GENE-040426-1298 | 485 | pias4b "protein inhibitor of a | 0.480 | 0.6 | 0.236 | 8e-14 | |
| UNIPROTKB|Q24JZ9 | 651 | PIAS1 "Protein inhibitor of ac | 0.188 | 0.175 | 0.330 | 1.1e-13 | |
| UNIPROTKB|F1PQ60 | 651 | PIAS1 "Uncharacterized protein | 0.188 | 0.175 | 0.330 | 1.1e-13 | |
| MGI|MGI:1913125 | 651 | Pias1 "protein inhibitor of ac | 0.188 | 0.175 | 0.330 | 1.4e-13 | |
| RGD|1307843 | 651 | Pias1 "protein inhibitor of ac | 0.188 | 0.175 | 0.330 | 1.4e-13 | |
| UNIPROTKB|F1SJH4 | 570 | PIAS1 "Uncharacterized protein | 0.188 | 0.2 | 0.330 | 1.5e-13 | |
| POMBASE|SPAC1687.05 | 727 | pli1 "SUMO E3 ligase Pli1" [Sc | 0.163 | 0.136 | 0.343 | 2e-13 |
| FB|FBgn0003612 Su(var)2-10 "Suppressor of variegation 2-10" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Score = 190 (71.9 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 47/173 (27%), Positives = 82/173 (47%)
Query: 285 NKIVLTGCD--ARIFCLGVRIVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVXXXXXX 342
N I + C R +CL V +VK+ + Q+L + +++G D TR
Sbjct: 301 NTITVQWCPDYTRSYCLAVYLVKKLTSTQLLQRM--KTKGVKPAD-YTR-------GLIK 350
Query: 343 XXXXXXXXLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQ 402
E+ + V+L CP+ ++ + R C H+ CFD +++++N+R W
Sbjct: 351 EKLTEDADCEIATTMLKVSLNCPLGKMKMLLPCRASTCSHLQCFDASLYLQMNERKPTWN 410
Query: 403 CPICLRNYSLENIIIDPYFNRITSKMRNCGEDITELEVKPDGSWRVK-TRSES 454
CP+C + +N++ID YF + +D TE+++ DGSW RSE+
Sbjct: 411 CPVCDKPAIYDNLVIDGYFQEVLGSSLLKSDD-TEIQLHQDGSWSTPGLRSET 462
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| ZFIN|ZDB-GENE-040426-2734 pias4a "protein inhibitor of activated STAT, 4a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| RGD|1308737 Pias4 "protein inhibitor of activated STAT, 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040426-1298 pias4b "protein inhibitor of activated STAT, 4b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q24JZ9 PIAS1 "Protein inhibitor of activated STAT, 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PQ60 PIAS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| MGI|MGI:1913125 Pias1 "protein inhibitor of activated STAT 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1307843 Pias1 "protein inhibitor of activated STAT, 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SJH4 PIAS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| POMBASE|SPAC1687.05 pli1 "SUMO E3 ligase Pli1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6L4L4 | SIZ1_ORYSJ | 6, ., 3, ., 2, ., - | 0.5905 | 0.9455 | 0.6548 | yes | no |
| Q680Q4 | SIZ1_ARATH | 6, ., 3, ., 2, ., - | 0.7154 | 0.9851 | 0.6753 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 606 | |||
| pfam02891 | 50 | pfam02891, zf-MIZ, MIZ/SP-RING zinc finger | 4e-18 | |
| pfam02037 | 35 | pfam02037, SAP, SAP domain | 8e-07 | |
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 2e-06 | |
| smart00513 | 35 | smart00513, SAP, Putative DNA-binding (bihelical) | 3e-06 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 5e-06 |
| >gnl|CDD|111745 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 4e-18
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 360 VNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPIC 406
V+L+CP+S RI + R + C H+ CFDL F+E N+R+ W CP+C
Sbjct: 1 VSLKCPISYLRISIPVRGRFCKHIQCFDLLSFLESNERTPTWNCPVC 47
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This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation. Length = 50 |
| >gnl|CDD|202100 pfam02037, SAP, SAP domain | Back alignment and domain information |
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| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
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| >gnl|CDD|128789 smart00513, SAP, Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation | Back alignment and domain information |
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| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 606 | |||
| KOG2169 | 636 | consensus Zn-finger transcription factor [Transcri | 100.0 | |
| PF02891 | 50 | zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 | 99.82 | |
| PF14324 | 144 | PINIT: PINIT domain; PDB: 3I2D_A. | 99.71 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 98.95 | |
| COG5034 | 271 | TNG2 Chromatin remodeling protein, contains PhD zi | 98.88 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 98.58 | |
| PF02037 | 35 | SAP: SAP domain; InterPro: IPR003034 The SAP (afte | 98.15 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 98.03 | |
| smart00513 | 35 | SAP Putative DNA-binding (bihelical) motif predict | 97.98 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 97.54 | |
| KOG2979 | 262 | consensus Protein involved in DNA repair [General | 97.42 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 97.2 | |
| KOG1844 | 508 | consensus PHD Zn-finger proteins [General function | 96.41 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 96.19 | |
| PF13831 | 36 | PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. | 95.88 | |
| COG5627 | 275 | MMS21 DNA repair protein MMS21 [DNA replication, r | 95.3 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 94.97 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 93.29 | |
| KOG2169 | 636 | consensus Zn-finger transcription factor [Transcri | 93.03 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 91.36 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 91.36 | |
| PF12949 | 35 | HeH: HeH/LEM domain; PDB: 2OUT_A. | 90.8 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 88.83 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 87.78 | |
| PF07498 | 43 | Rho_N: Rho termination factor, N-terminal domain; | 86.65 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 85.3 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 83.95 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 83.3 | |
| KOG4259 | 260 | consensus Putative nucleic acid-binding protein Hc | 83.06 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 80.33 |
| >KOG2169 consensus Zn-finger transcription factor [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=344.94 Aligned_cols=374 Identities=20% Similarity=0.366 Sum_probs=260.2
Q ss_pred HhccHHHHHHHH-HHhCCCCCC--ChHHHHHHHHHhccchhhhhhcccCCCCcHHHHHHHHHHHHHH-hhcc--CCCccC
Q 007360 12 AHFRIKELKDVL-TQLGLSKQG--KKQDLVDRILAILSDDQVSKMWAKKSPVSKEEVAKLVDDTHRK-LQVS--VAPDLA 85 (606)
Q Consensus 12 ~~fRi~ELk~vL-~~lglsk~G--~K~eL~~ril~~l~~~~~~~~~~~~~~~~~~~~~k~i~~~Y~~-m~~~--~~~~~~ 85 (606)
+++|+.||+.++ ...|+.+.| +|.+|.-|.+.++..++. +.++++|.+.|++ .... .+.+++
T Consensus 1 m~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~------------~~~q~~i~~~~~~~~~~~~~~~~~~~ 68 (636)
T KOG2169|consen 1 MSLRVSSLQVLLSGAIGRSFPGQVNKHKLAPRALTLVGSGCK------------PYLQMVIKELYQRQYPNGQQQPIDLP 68 (636)
T ss_pred CCcccccccccchhhhccccccccchhhhhhhhhcccccCCc------------hhhhhhhhhhhhhhcccccccccccc
Confidence 368999999998 788888888 899999999999988775 4588899999973 1111 111111
Q ss_pred CCCCCCCCCCCcccccccccccCCCCCceeccCCCCCCCCCeeeecCCCCCCcccccccccCCCCCCCCCCCCCcccccc
Q 007360 86 SKGGQGVSNSSNIKIKGEMDDYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEI 165 (606)
Q Consensus 86 s~~~~~~~~~~~~~p~~~~~~~~~~~~~~rCiC~~sl~~~~mI~C~~~~C~~wqH~~Cv~i~~k~~~~~p~~P~~fyCe~ 165 (606)
... ..|. .+...+.. ....+..|. =..++...+.+. ..-+=+.
T Consensus 69 ~~~---------~~~~-~~~~~~~~------------~~~~~~~~~-----------~~~~~~~~l~g~----~~~~~~~ 111 (636)
T KOG2169|consen 69 AVK---------LHPN-VVPPFYPL------------LWQLLRHPT-----------QQPVTPSSLLGP----PLPFHPD 111 (636)
T ss_pred ccc---------cCCc-ccCccccc------------hhcccccCC-----------CCCCCcccccCC----CCcCCCc
Confidence 111 0110 00000000 000001000 000111111110 0112223
Q ss_pred cccccCCccceeecccccceeeeecccCCCCCCCceeeeEEEEeChhhHHhhcCC-C------eeEEEEEEecCCCCccc
Q 007360 166 CRLSRADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQ-E------YDVQAWCMLLNDKVPFR 238 (606)
Q Consensus 166 Crl~r~DPF~~~i~~ll~Pv~l~~s~i~~~G~~~~qs~~~~F~Lt~~~~~~L~~~-~------~~lql~C~~l~d~~~~~ 238 (606)
-++. ..|||+++..+++|+.+..... ...+...+.|.|+++....+... + ..-.+ |+.. ...+++
T Consensus 112 ~~~~-~~~~y~~l~~~~~p~~~~~~~~-----~~~~~~~~~f~lt~~~~~~i~~~~~~~~~~k~~~~~-~~~~-~s~p~e 183 (636)
T KOG2169|consen 112 VKLK-KLPFYDVLSELIKPHVLHSSNS-----PSLSESPFLFALTPEQVSGISSRPDVLPGSKSEGSV-CLME-TSCPQE 183 (636)
T ss_pred cccc-CCchheecccccCceeecCcCC-----CCcccccchhhcchhhhhhcccccccccccccccce-eecc-ccCccc
Confidence 3444 5999999999999998875432 24556778899999998776431 1 11111 5553 356888
Q ss_pred ccCCCceEEEEcCeEeecc-cCCCCCCCCC-CCCCCCCC-ccc--CcCCC-ccEEEEEEe--cCceEEEEEEEEEecCHH
Q 007360 239 MQWPQYADLQVNGVPVRAI-NRPGSQLLGA-NGRDDGPI-ITP--WTKDG-INKIVLTGC--DARIFCLGVRIVKRRSVQ 310 (606)
Q Consensus 239 ~~wP~~~~l~VNg~~v~~~-~Rp~~~~~g~-~gR~~~pi-IT~--~lk~g-~N~I~it~~--d~~~y~~~V~lVk~~s~e 310 (606)
.+||..+.++||+..+... ..-..++.+. .+|...|. ||. ++... .|.+.+.|. ..+.|.+++|+|+.++.+
T Consensus 184 ~~~p~~~~~~vn~~~~~l~~~~~~~n~~~~~~~~~~~P~n~t~~~~~~~~~~~~~~~~~~~~~~~~ysl~~~~v~~~t~~ 263 (636)
T KOG2169|consen 184 DHFPPNVQVKVNNSPCQLPFGYMPNNKHGLEPKRPSRPGNITSLSRLSVTTPNQITVLWTAQGGKSYSLSVYFVEGLTSK 263 (636)
T ss_pred cccCceeEEEecCCcceeeccccCCCCcccccCCCCCCCcCcccccccccccccceEEEEeccCcccceEEEEecccCHH
Confidence 9999999999999988875 1111112222 25667777 998 44443 377777764 678999999999999999
Q ss_pred HHHHhcccCCC-CCCHHHHHHHHHHhhCCCCCCCCCCCCCCcceEeecceeeecCCCCcccccccccCCCCCccccccHH
Q 007360 311 QVLNLIPKESE-GEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLD 389 (606)
Q Consensus 311 ~Ll~~I~~~~~-~~~~e~al~rIkr~l~~~~~~~n~d~DdD~eIv~~~~~vSL~CPls~~ri~~P~Rg~~C~HlqCFDl~ 389 (606)
+|+++++...+ ...++...+.+++.+ ..++|.||+++++.|||.|||+++||++|+|+..|+|+||||+.
T Consensus 264 ~llq~~~~~~~~~~~~~~s~~~~~~~l---------~~~~d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~ 334 (636)
T KOG2169|consen 264 DLLQRLKQNGKINRNLSQSDALIKKKL---------TAGPDSEIATTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDAL 334 (636)
T ss_pred HHHHHHhccCCccCchhHhHHHhhccc---------ccCCcccceeccceeEecCCcccceeecCCcccccccceecchh
Confidence 99999876432 233466666666543 23456679999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHhhcCCCCeeEEEEeeCCceEeccCCCc
Q 007360 390 VFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKMRNCGEDITELEVKPDGSWRVKTRSES 454 (606)
Q Consensus 390 ~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l~~~~~dv~eV~v~~DGsW~~~~~~e~ 454 (606)
+||+||+++++|+||||.+.+.+++|+||+||+.|| .+|..+++||++..||+|++...++.
T Consensus 335 ~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL---~~~~~~~~ev~~~~dGsw~pi~~~~~ 396 (636)
T KOG2169|consen 335 SYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNIL---QSCQANVEEVEVSEDGSWKPIPEEAE 396 (636)
T ss_pred hhHHhccCCCeeeCccCCccccccchhhhHHHHHHH---hhccCCCcceEecCCCceecCccccc
Confidence 999999999999999999999999999999999995 55677899999999999999887764
|
|
| >PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF14324 PINIT: PINIT domain; PDB: 3I2D_A | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
| >PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis [] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >KOG2979 consensus Protein involved in DNA repair [General function prediction only] | Back alignment and domain information |
|---|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
| >KOG1844 consensus PHD Zn-finger proteins [General function prediction only] | Back alignment and domain information |
|---|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
| >PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A | Back alignment and domain information |
|---|
| >COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2169 consensus Zn-finger transcription factor [Transcription] | Back alignment and domain information |
|---|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
| >PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A | Back alignment and domain information |
|---|
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
| >PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts | Back alignment and domain information |
|---|
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
| >KOG4259 consensus Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 606 | ||||
| 2rno_A | 110 | Solution Structure Of The N-Terminal Sap Domain Of | 4e-27 | ||
| 1wew_A | 78 | Solution Structure Of Phd Domain In Dna-Binding Fam | 4e-21 | ||
| 2rsd_A | 68 | Solution Structure Of The Plant Homeodomain (Phd) O | 5e-16 | ||
| 4fo9_A | 360 | Crystal Structure Of The E3 Sumo Ligase Pias2 Lengt | 8e-13 | ||
| 3i2d_A | 371 | Crystal Structure Of S. Cerevisiae Sumo E3 Ligase S | 9e-12 |
| >pdb|2RNO|A Chain A, Solution Structure Of The N-Terminal Sap Domain Of Sumo E3 Ligases From Oryza Sativa Length = 110 | Back alignment and structure |
|
| >pdb|1WEW|A Chain A, Solution Structure Of Phd Domain In Dna-Binding Family Protein Aam98074 Length = 78 | Back alignment and structure |
| >pdb|2RSD|A Chain A, Solution Structure Of The Plant Homeodomain (Phd) Of The E3 Sumo Ligase Siz1 From Rice Length = 68 | Back alignment and structure |
| >pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2 Length = 360 | Back alignment and structure |
| >pdb|3I2D|A Chain A, Crystal Structure Of S. Cerevisiae Sumo E3 Ligase Siz1 Length = 371 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371 | Back alignment and structure |
|---|
Score = 199 bits (506), Expect = 2e-58
Identities = 61/287 (21%), Positives = 126/287 (43%), Gaps = 24/287 (8%)
Query: 181 PLYPLK--LTTTNIPTDGTNPARILEKTFPITRADKDLLSK--QEYDVQAWCML---LND 233
P Y ++ + + + T + F +++AD +LLS ++ + + + L
Sbjct: 72 PFYKIQRLIPELVMNVEVTGGRGMCSAKFKLSKADYNLLSNPNSKHRLYLFSGMINPLGS 131
Query: 234 KVPFRMQWPQYADLQVNGVPVRAINRPGSQLLG-ANGRDDGPIITPWTKDGINKIVLT-G 291
+ +Q+P +L+ N V ++ R G A D P + P+T N + L
Sbjct: 132 RGNEPIQFPFPNELRCNNVQIKDNIRGFKSKPGTAKPADLTPHLKPYT--QQNNVELIYA 189
Query: 292 CDARIFCLGVRIVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVGGGNAADNADSDSDL 351
+ + L IV+ + +Q+L + + + + L + + D ++
Sbjct: 190 FTTKEYKLFGYIVEMITPEQLLEKVLQHPK-IIKQATLLYLKK---------TLREDEEM 239
Query: 352 EVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYS 411
+ S ++L+CP+S +R+K + C H+ CFD F+ + WQCP+C + +
Sbjct: 240 GLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299
Query: 412 LENIIIDPYFNRITSKMRNCGEDITELEVKPDGSWRVKTRSESDRRE 458
LEN+ I + + I ++NC +++ ++E+ DG W + D
Sbjct: 300 LENLAISEFVDDI---LQNCQKNVEQVELTSDGKWTAILEDDDDSDS 343
|
| >4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Length = 360 | Back alignment and structure |
|---|
| >2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp} Length = 110 | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 | Back alignment and structure |
|---|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1 Length = 65 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 | Back alignment and structure |
|---|
| >2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae} Length = 114 | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 606 | |||
| 4fo9_A | 360 | E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom | 100.0 | |
| 3i2d_A | 371 | E3 SUMO-protein ligase SIZ1; signal transduction, | 100.0 | |
| 2rno_A | 110 | Putative DNA-binding protein; SUMO ligase, sumoyla | 100.0 | |
| 2rsd_A | 68 | E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant | 99.47 | |
| 1v66_A | 65 | Protein inhibitor of activated STAT protein 1; fou | 99.45 | |
| 1wew_A | 78 | DNA-binding family protein; structural genomics, P | 99.42 | |
| 1weu_A | 91 | Inhibitor of growth family, member 4; structural g | 98.98 | |
| 3o70_A | 68 | PHD finger protein 13; PHF13, structural genomics | 98.92 | |
| 3o7a_A | 52 | PHD finger protein 13 variant; PHF13, zinc finger, | 98.91 | |
| 2lv9_A | 98 | Histone-lysine N-methyltransferase MLL5; zinc fing | 98.82 | |
| 2g6q_A | 62 | Inhibitor of growth protein 2; protein-peptide com | 98.8 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 98.8 | |
| 3c6w_A | 59 | P28ING5, inhibitor of growth protein 5; chromatin, | 98.79 | |
| 1wen_A | 71 | Inhibitor of growth family, member 4; ING1-like pr | 98.76 | |
| 1wee_A | 72 | PHD finger family protein; structural genomics, PH | 98.76 | |
| 1wep_A | 79 | PHF8; structural genomics, PHD domain, riken struc | 98.74 | |
| 3kqi_A | 75 | GRC5, PHD finger protein 2; metal-binding, zinc-fi | 98.69 | |
| 2vnf_A | 60 | ING 4, P29ING4, inhibitor of growth protein 4; ace | 98.68 | |
| 1we9_A | 64 | PHD finger family protein; structural genomics, PH | 98.67 | |
| 1wem_A | 76 | Death associated transcription factor 1; structura | 98.66 | |
| 1x4i_A | 70 | Inhibitor of growth protein 3; structural genomics | 98.59 | |
| 2jmi_A | 90 | Protein YNG1, ING1 homolog 1; PHD, histone, recogn | 98.52 | |
| 2k16_A | 75 | Transcription initiation factor TFIID subunit 3; p | 98.22 | |
| 2rnn_A | 114 | E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind | 98.19 | |
| 3kv5_D | 488 | JMJC domain-containing histone demethylation prote | 98.19 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 98.18 | |
| 3kv4_A | 447 | PHD finger protein 8; epigenetics, histone CODE, c | 98.06 | |
| 2kgg_A | 52 | Histone demethylase jarid1A; PHD finger, histone m | 98.04 | |
| 2do1_A | 55 | Nuclear protein HCC-1; SAP domain, structural geno | 97.85 | |
| 1zrj_A | 50 | E1B-55KDA-associated protein 5 isoform C; SAP doma | 97.73 | |
| 2xb1_A | 105 | Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; | 97.61 | |
| 1h1j_S | 51 | THO1 protein; SAP domain, DNA binding; NMR {Saccha | 97.58 | |
| 2kvu_A | 75 | MKL/myocardin-like protein 1; SAP motif, DNA/RNA b | 97.57 | |
| 2vpb_A | 65 | Hpygo1, pygopus homolog 1; gene regulation, WNT si | 97.43 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 97.36 | |
| 1jjr_A | 151 | KU70, thyroid autoantigen; DNA repair protein, pro | 97.35 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 97.3 | |
| 2l43_A | 88 | N-teminal domain from histone H3.3, linker, PHD1 f | 97.21 | |
| 2ku3_A | 71 | Bromodomain-containing protein 1; PHD finger, chro | 97.2 | |
| 1f62_A | 51 | Transcription factor WSTF; Zn-finger; NMR {Homo sa | 97.13 | |
| 3pur_A | 528 | Lysine-specific demethylase 7 homolog; oxidoreduct | 97.1 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 97.1 | |
| 2e6r_A | 92 | Jumonji/ARID domain-containing protein 1D; PHD dom | 97.09 | |
| 2l5u_A | 61 | Chromodomain-helicase-DNA-binding protein 4; CHD4, | 97.04 | |
| 1xwh_A | 66 | Autoimmune regulator; PHD domain, Zn binding domai | 96.93 | |
| 4gne_A | 107 | Histone-lysine N-methyltransferase NSD3; zinc fing | 96.89 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 96.85 | |
| 2yql_A | 56 | PHD finger protein 21A; PHD domain, structural gen | 96.8 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 96.72 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 96.58 | |
| 2lri_C | 66 | Autoimmune regulator; Zn binding protein domain, a | 96.53 | |
| 3asl_A | 70 | E3 ubiquitin-protein ligase UHRF1; histone reader | 96.45 | |
| 2puy_A | 60 | PHD finger protein 21A; PHD finger, histone CODE, | 96.38 | |
| 2yt5_A | 66 | Metal-response element-binding transcription facto | 96.35 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 96.34 | |
| 2e6s_A | 77 | E3 ubiquitin-protein ligase UHRF2; PHD domain, str | 96.28 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 96.28 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 96.22 | |
| 2ku7_A | 140 | MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio | 95.78 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 95.61 | |
| 1mm2_A | 61 | MI2-beta; PHD, zinc finger, protein scaffold, DNA | 95.57 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 95.48 | |
| 3shb_A | 77 | E3 ubiquitin-protein ligase UHRF1; unmodified hist | 95.43 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 95.33 | |
| 3rsn_A | 177 | SET1/ASH2 histone methyltransferase complex subun; | 95.21 | |
| 2kwj_A | 114 | Zinc finger protein DPF3; acetyl-lysine, transcrip | 95.16 | |
| 1fp0_A | 88 | KAP-1 corepressor; PHD domain, C3HC4 type zinc bin | 95.14 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 94.91 | |
| 3ask_A | 226 | E3 ubiquitin-protein ligase UHRF1; histone reader | 94.77 | |
| 2ysm_A | 111 | Myeloid/lymphoid or mixed-lineage leukemia protein | 94.65 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 94.65 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 94.56 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 94.55 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 94.13 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 93.95 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 93.78 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 93.58 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 93.54 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 93.27 | |
| 3v43_A | 112 | Histone acetyltransferase KAT6A; MOZ, PHD finger, | 93.26 | |
| 1wev_A | 88 | Riken cDNA 1110020M19; structural genomics, PHD do | 92.75 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 92.73 | |
| 2jx3_A | 131 | Protein DEK; alpha helix, SAF/SAP motif, DNA bindi | 92.47 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 92.29 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 92.19 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 92.16 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 91.31 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 91.26 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 90.73 | |
| 4bbq_A | 117 | Lysine-specific demethylase 2A; oxidoreductase, ub | 90.73 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 90.66 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 90.38 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 90.0 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 89.04 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 88.42 | |
| 2ysm_A | 111 | Myeloid/lymphoid or mixed-lineage leukemia protein | 87.99 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 87.98 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 86.54 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 85.31 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 85.17 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 84.86 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 84.64 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 83.58 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 83.12 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 80.59 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 80.07 |
| >4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-55 Score=462.44 Aligned_cols=310 Identities=21% Similarity=0.405 Sum_probs=211.6
Q ss_pred cccccCCccceeecccccceeeeecccCCCCCCCceeeeEEEEeChhhHHhhcCC---------CeeEEE---EEEecCC
Q 007360 166 CRLSRADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQ---------EYDVQA---WCMLLND 233 (606)
Q Consensus 166 Crl~r~DPF~~~i~~ll~Pv~l~~s~i~~~G~~~~qs~~~~F~Lt~~~~~~L~~~---------~~~lql---~C~~l~d 233 (606)
-+++ .+|||+++++|++|+.|.++ ++...|+..|.|.||++|...++.. +|++|| ||.. ++
T Consensus 18 ~~~k-~lPFy~v~~~l~~Pt~L~~~-----~~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~vqvqlRfC~~-~~ 90 (360)
T 4fo9_A 18 GQLK-NLPFYDVLDVLIKPTSLVQS-----SIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLA-ET 90 (360)
T ss_dssp CCBC-CCTTEEEEEEEEEEEECCCC-----SSCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESEEEEEEEEEC--C
T ss_pred ceec-CCCchHhHhhhcCceecccc-----cCcccccceeEEEcCHHHHHHHhhccccccccccceeEEEEEEEEEc-cC
Confidence 3455 47999999999999999764 3467899999999999999888642 355554 4766 46
Q ss_pred CCcccccCCCceEEEEcCeEeecccCCCCCCCCCC-CCCCCCC-cccCcCCC---ccEEEEEEe-c-CceEEEEEEEEEe
Q 007360 234 KVPFRMQWPQYADLQVNGVPVRAINRPGSQLLGAN-GRDDGPI-ITPWTKDG---INKIVLTGC-D-ARIFCLGVRIVKR 306 (606)
Q Consensus 234 ~~~~~~~wP~~~~l~VNg~~v~~~~Rp~~~~~g~~-gR~~~pi-IT~~lk~g---~N~I~it~~-d-~~~y~~~V~lVk~ 306 (606)
..++++.||.+++|+|||+.|+..+.-..++.|.. +|...|+ ||++++.+ .|+|+|+|. + .+.|+++||+|++
T Consensus 91 ~~~q~~~fP~~i~lkVNg~~v~lp~~~p~~k~g~~~kr~~~PidIT~~lr~~~~~~N~I~vt~~~~~~~~y~l~V~lV~~ 170 (360)
T 4fo9_A 91 SCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQ 170 (360)
T ss_dssp -CCBCCBCCTTCEEEETTEEECCCC--------CCCCCBCCCEECGGGSCCCSSSCEEEEEEEECBTTBCEEEEEEEEEE
T ss_pred CCcccccCCCceEEEECCEEccCCCCCCCcccccccCCCCCceechhhhccCCCCCcEEEEEEecCCCceEEEEEEEEEe
Confidence 67889999999999999999997532112344443 5566666 99999987 599999997 3 6899999999999
Q ss_pred cCHHHHHHhcccCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCCcceEeecceeeecCCCCcccccccccCCCCCccccc
Q 007360 307 RSVQQVLNLIPKESEGEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCF 386 (606)
Q Consensus 307 ~s~e~Ll~~I~~~~~~~~~e~al~rIkr~l~~~~~~~n~d~DdD~eIv~~~~~vSL~CPls~~ri~~P~Rg~~C~HlqCF 386 (606)
+++++|++.|+++ ...+.++++++|++.+. .|+|+||+++++.|||+||||++||++|+||..|.|+|||
T Consensus 171 ~s~~~Llq~l~~k-~~~~~e~t~~~Ik~~l~---------~d~DddI~~~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCF 240 (360)
T 4fo9_A 171 LTSAMLLQRLKMK-GIRNPDHSRALIKEKLT---------ADPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCF 240 (360)
T ss_dssp CCHHHHHHHHHTC--CBCHHHHHHHHHHHHC------------------CCEEEESBCTTTCSBCSSEEEETTCCCCCCE
T ss_pred CCHHHHHHHHHhc-CCCCHHHHHHHHHHHhc---------cCCccceeeeeeEEeeeCCCccceeccCCcCCCCCCCccC
Confidence 9999999999864 35678899999999874 1334468889999999999999999999999999999999
Q ss_pred cHHHHHHHhcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHhhcCCCCeeEEEEeeCCceEeccCCCcccccccccCCCC
Q 007360 387 DLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKMRNCGEDITELEVKPDGSWRVKTRSESDRREIGDLASWH 466 (606)
Q Consensus 387 Dl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l~~~~~dv~eV~v~~DGsW~~~~~~e~~~~~~~~~~~~~ 466 (606)
||++||+|+++.++|+||||++.+++++|+||+||++||+ .+ .++++|+|++||+|++..+..+ ..|+ ...||.
T Consensus 241 Dl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~---~~-~~v~~I~v~~DGsW~p~~~k~e-~~~~-~~~~~~ 314 (360)
T 4fo9_A 241 DAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN---DC-SDVDEIKFQEDGSWCPMRPKKE-AMKV-SSQPCT 314 (360)
T ss_dssp EHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT---TC-SSCCEEEECC-CCEEC------------------
T ss_pred CHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH---hC-CCCCEEEECCCCceecCCCCcc-cccc-cCCCCC
Confidence 9999999999999999999999999999999999999954 45 4899999999999998755543 3343 556777
Q ss_pred CCCCCCccC-------CCCCCCchhhhhhhhhccccCCCC
Q 007360 467 FPDGSLCAP-------AGGEDKPKVEMLKHVRQEGVSEGH 499 (606)
Q Consensus 467 ~~dg~~~~~-------~~~~~~~~~~~~~~~~~e~~s~~~ 499 (606)
..||...++ +....++++|++ .|+-|.+||..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~s~~~ 353 (360)
T 4fo9_A 315 KIESSSVLSKPCSVTVASEASKKKVDVI-DLTIESSSDEE 353 (360)
T ss_dssp ----------------------------------------
T ss_pred CcccccccccccccCCCccccCCCccEE-EecccCccccC
Confidence 777765532 222334577876 68888877654
|
| >3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp} | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} | Back alignment and structure |
|---|
| >1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1 | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} | Back alignment and structure |
|---|
| >2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* | Back alignment and structure |
|---|
| >2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* | Back alignment and structure |
|---|
| >2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 | Back alignment and structure |
|---|
| >1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A | Back alignment and structure |
|---|
| >2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* | Back alignment and structure |
|---|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A | Back alignment and structure |
|---|
| >4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* | Back alignment and structure |
|---|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
| >2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
| >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A | Back alignment and structure |
|---|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
| >3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
| >2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 606 | ||||
| d1wewa_ | 78 | g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c | 8e-18 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 2e-11 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 1e-07 | |
| d1jeqa1 | 51 | a.140.2.1 (A:559-609) DNA binding C-terminal domai | 1e-07 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 2e-07 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 6e-06 | |
| d1wesa_ | 71 | g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I | 1e-05 | |
| d2pnxa1 | 51 | g.50.1.2 (A:195-245) Inhibitor of growth protein 4 | 2e-05 | |
| d1v66a_ | 65 | a.140.2.1 (A:) p53 binding domain of protein inhib | 1e-04 | |
| d1zrja1 | 37 | a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucle | 2e-04 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 3e-04 | |
| d1f62a_ | 51 | g.50.1.2 (A:) Williams-Beuren syndrome transcripti | 4e-04 | |
| d1jm7a_ | 103 | g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie | 7e-04 | |
| d1h1js_ | 44 | a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Bak | 0.001 |
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: PHD domain domain: Sumoylation ligase E3, SIZ1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 75.9 bits (186), Expect = 8e-18
Identities = 44/66 (66%), Positives = 55/66 (83%)
Query: 105 DDYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCE 164
+D Q + KV C CG+SLET+SMI+CEDPRC VWQH+ CVI+P+KP +GNPP+PE FYCE
Sbjct: 8 EDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCE 67
Query: 165 ICRLSR 170
ICRL+
Sbjct: 68 ICRLTS 73
|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
| >d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 37 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
| >d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 44 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 606 | |||
| d1v66a_ | 65 | p53 binding domain of protein inhibitor of activat | 99.42 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 99.02 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 98.56 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 98.54 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 98.54 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 98.47 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 98.31 | |
| d1jeqa1 | 51 | DNA binding C-terminal domain of ku70 {Human (Homo | 98.22 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 97.96 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 97.88 | |
| d1zrja1 | 37 | Heterogeneous nuclear ribonucleoprotein U-like pro | 97.83 | |
| d1h1js_ | 44 | S/mar DNA-binding protein Tho1 {Baker's yeast (Sac | 97.42 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 97.3 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 97.06 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 97.03 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 96.99 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 96.79 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 96.71 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 96.37 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 96.33 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 95.47 | |
| d2do1a1 | 42 | Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId | 95.07 | |
| d1kcfa1 | 36 | Mitochondrial resolvase ydc2 N-terminal domain {Fi | 93.47 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 92.35 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 91.16 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 87.36 | |
| d1y02a1 | 44 | Rififylin (FYVE-RING finger protein Sakura) {Human | 84.74 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 81.53 |
| >d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: LEM/SAP HeH motif superfamily: SAP domain family: SAP domain domain: p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=8.1e-14 Score=109.54 Aligned_cols=61 Identities=25% Similarity=0.369 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHhCCCCCCChHHHHHHHHHhccchhhhhhcccCCCCcHHHHHHHHHHHHHH
Q 007360 3 LIASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPVSKEEVAKLVDDTHRK 75 (606)
Q Consensus 3 ~~~~~~~~l~~fRi~ELk~vL~~lglsk~G~K~eL~~ril~~l~~~~~~~~~~~~~~~~~~~~~k~i~~~Y~~ 75 (606)
=+.+++.||++|||.|||.+|++.|.+|+|||+||++|+|.||...+. +++...|.++|++
T Consensus 3 d~~e~~~Mv~sfRVsELQ~LLg~~gr~KsGrK~eL~~RaL~LL~~~~~------------~~v~~kIrelY~~ 63 (65)
T d1v66a_ 3 DSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCS------------PAVQMKIKELYRR 63 (65)
T ss_dssp CTTHHHHHHTTCCHHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHTCCC------------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHc
Confidence 356889999999999999999999999999999999999999997654 4688999999975
|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
| >d1y02a1 a.140.2.1 (A:71-114) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|