Citrus Sinensis ID: 007398
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | 2.2.26 [Sep-21-2011] | |||||||
| Q84MA5 | 594 | Cationic amino acid trans | yes | no | 0.981 | 1.0 | 0.749 | 0.0 | |
| O64759 | 569 | Cationic amino acid trans | no | no | 0.925 | 0.984 | 0.613 | 0.0 | |
| Q9SHH0 | 590 | Cationic amino acid trans | no | no | 0.948 | 0.972 | 0.535 | 1e-171 | |
| Q9LZ20 | 583 | Cationic amino acid trans | no | no | 0.912 | 0.946 | 0.438 | 1e-132 | |
| Q9SQZ0 | 584 | Cationic amino acid trans | no | no | 0.890 | 0.922 | 0.426 | 1e-125 | |
| P30823 | 624 | High affinity cationic am | yes | no | 0.831 | 0.806 | 0.301 | 5e-71 | |
| B3TP03 | 654 | Low affinity cationic ami | yes | no | 0.877 | 0.811 | 0.292 | 6e-71 | |
| Q09143 | 622 | High affinity cationic am | yes | no | 0.629 | 0.612 | 0.353 | 9e-68 | |
| Q8W4K3 | 600 | Cationic amino acid trans | no | no | 0.834 | 0.841 | 0.305 | 2e-67 | |
| P70423 | 618 | Cationic amino acid trans | no | no | 0.828 | 0.810 | 0.310 | 2e-67 |
| >sp|Q84MA5|CAAT1_ARATH Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 944 bits (2441), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/602 (74%), Positives = 518/602 (86%), Gaps = 8/602 (1%)
Query: 1 MGVNDGDEGLRRRGCSCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIH 60
M GD+GLRRRGCSCTK+DFLPEESF+S GNY++ALK TP R DR++TRSLD+ EI+
Sbjct: 1 MASGGGDDGLRRRGCSCTKDDFLPEESFQSMGNYLKALKETPSRFMDRIMTRSLDSDEIN 60
Query: 61 EIKARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAM 120
E+KARS HEMKKTLTWWDL+WFGIGAVIG+GIFVLTG EAR +GPAVVLS+VVSG+SAM
Sbjct: 61 EMKARSGHEMKKTLTWWDLMWFGIGAVIGSGIFVLTGLEARNHSGPAVVLSYVVSGVSAM 120
Query: 121 LSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFAT 180
LSVFCYTEFAVEIPVAGGSFAYLRVELGDF+AF+AAGNI+LEYV+GGAAVARSWTSYFAT
Sbjct: 121 LSVFCYTEFAVEIPVAGGSFAYLRVELGDFMAFIAAGNIILEYVVGGAAVARSWTSYFAT 180
Query: 181 LCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVI 240
L N +PEDFRIIVH + EDY LDPIAVGV A+IC+LAVV TKGSSRFNYIASIIH++VI
Sbjct: 181 LLNHKPEDFRIIVHKLGEDYSHLDPIAVGVCAIICVLAVVGTKGSSRFNYIASIIHMVVI 240
Query: 241 LFIIIGGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPI 300
LF+II GF AD KNY F P+G RGVFK++AVLFFAYIGFDAVSTMAEETKNP +DIPI
Sbjct: 241 LFVIIAGFTKADVKNYSDFTPYGVRGVFKSAAVLFFAYIGFDAVSTMAEETKNPGRDIPI 300
Query: 301 GLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMT 360
GLVGSM VTT+ YCL+A+ LCLMQPY I+ DAPFSVAF AVGWDWAKY+VAFGALKGMT
Sbjct: 301 GLVGSMVVTTVCYCLMAVTLCLMQPYQQIDPDAPFSVAFSAVGWDWAKYIVAFGALKGMT 360
Query: 361 TVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVL 420
TVLLV A+GQARY+THIAR HMMPPWLAQV+ KTGTP+NAT+VML ATA+IAFFTKL +L
Sbjct: 361 TVLLVGAIGQARYMTHIARAHMMPPWLAQVNAKTGTPINATVVMLAATALIAFFTKLKIL 420
Query: 421 SNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSK 480
++LLS+STLFIFM VAVALLVRRYYV+G T+T ++ K +V + LIL SS ATA YW L +
Sbjct: 421 ADLLSVSTLFIFMFVAVALLVRRYYVTGETSTRDRNKFLVFLGLILASSTATAVYWALEE 480
Query: 481 HGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRAS 540
GWIGYCITVPIWFL T+ + VPQARAPK+WGVPLVPWLPSASIAINIFLLGSID S
Sbjct: 481 EGWIGYCITVPIWFLSTVAMKFLVPQARAPKIWGVPLVPWLPSASIAINIFLLGSIDTKS 540
Query: 541 FARFGVWTVILLLYYIFFGLHASYDTAKASGENDRAAGGTWKQMEEGGAISSATDPNNTS 600
F RF +WT ILL+YY+ FGLHA+YDTAKA+ + +A ++ EEGG ++ N+ S
Sbjct: 541 FVRFAIWTGILLIYYVLFGLHATYDTAKATLKEKQAL----QKAEEGGVVAD----NSCS 592
Query: 601 AN 602
A
Sbjct: 593 AT 594
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High-affinity permease involved in the transport of the cationic amino acids (e.g. arginine, lysine, histidine, citrulline, valine, and glutamate). Transport mostly basic amino-acids, and, to a lower extent neutral and acidic amino-acids. May function as a proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O64759|CAAT5_ARATH Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/562 (61%), Positives = 438/562 (77%), Gaps = 2/562 (0%)
Query: 8 EGLRRRGCSCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIHEIKARSE 67
EG R +K DF PEESF+S+G+Y AL T R K+R+++RS D E E+K +SE
Sbjct: 2 EGEERGYWRWSKRDFFPEESFQSFGSYRAALSQTCSRFKNRLVSRSDDENERFELKKQSE 61
Query: 68 HEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYT 127
HEMK+ LTWWDL+WFG G+VIGAGIFVLTGQEA ++AGPA+VLS+VVSGLSAMLSVFCYT
Sbjct: 62 HEMKRCLTWWDLVWFGFGSVIGAGIFVLTGQEAHEQAGPAIVLSYVVSGLSAMLSVFCYT 121
Query: 128 EFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPE 187
EFAVEIPVAGGSFAYLR+ELGDF AF+ AGNILLE ++G AAVAR+WTSYFATL N+ P
Sbjct: 122 EFAVEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGTAAVARAWTSYFATLLNRSPN 181
Query: 188 DFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGG 247
RI + + LDPIAV V A +A +ST+ +S N+IAS I+ +VI F+II G
Sbjct: 182 ALRIKT-DLSSGFNLLDPIAVVVIAASATIASISTRKTSLLNWIASAINTLVIFFVIIAG 240
Query: 248 FANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMA 307
F +ADT N F PFG GVF+A+AV++FAY GFD+++TMAEETKNP++DIPIGL+GSM+
Sbjct: 241 FIHADTSNLTPFLPFGPEGVFRAAAVVYFAYGGFDSIATMAEETKNPSRDIPIGLLGSMS 300
Query: 308 VTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSA 367
+ T+ YCL+A++L +MQ Y I+ +A +SVAF++VG W KY+VA GALKGMTTVLLV A
Sbjct: 301 IITVIYCLMALSLSMMQKYTDIDPNAAYSVAFQSVGMKWGKYLVALGALKGMTTVLLVGA 360
Query: 368 VGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSIS 427
+GQARY+THIARTHM+PP A VH KTGTP+NA +++ +A+IAFF+ L+VL++LLSIS
Sbjct: 361 LGQARYVTHIARTHMIPPIFALVHPKTGTPINANLLVAIPSALIAFFSGLDVLASLLSIS 420
Query: 428 TLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHG-WIGY 486
TLFIF ++ +ALLVRRYYV T + +KLI C+L +++SS+ T+AYWG+ + G WIGY
Sbjct: 421 TLFIFTMMPIALLVRRYYVRQDTPRVHLIKLITCLLFVVVSSMGTSAYWGMQRKGSWIGY 480
Query: 487 CITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARFGV 546
+TVP WFLGTL + FVPQ R PK+WGVPLVPWLP SIA NIFL+GS+ +F RFGV
Sbjct: 481 TVTVPFWFLGTLGIVFFVPQQRTPKVWGVPLVPWLPCLSIATNIFLMGSLGAMAFVRFGV 540
Query: 547 WTVILLLYYIFFGLHASYDTAK 568
T+ +LLYY GLHA++D A
Sbjct: 541 CTLAMLLYYFLLGLHATFDMAH 562
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High-affinity permease involved in the transport of the cationic amino acids (e.g. arginine, and, to a lower extent, citrulline and glutamate). Transport mostly basic amino-acids, and, to a lower extent neutral and acidic amino-acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHH0|CAAT8_ARATH Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 602 bits (1552), Expect = e-171, Method: Compositional matrix adjust.
Identities = 308/575 (53%), Positives = 411/575 (71%), Gaps = 1/575 (0%)
Query: 4 NDGDEGLRRRGCSCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIHEIK 63
D RR K DF PE SF+S+ Y AL AT RL DR+L+RS D E+ +
Sbjct: 15 RSDDLSQRRSYWRWRKQDFFPEFSFQSFSTYKSALSATCPRLADRLLSRSSDAYELDAAR 74
Query: 64 ARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSV 123
SE+ M++ LTWWDL+W G+V+G+G+FV+TGQEAR AGPAVVLS+ +SG+SA+LSV
Sbjct: 75 RESENPMRRCLTWWDLLWLSFGSVVGSGVFVITGQEARVGAGPAVVLSYAISGVSALLSV 134
Query: 124 FCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCN 183
CY EF VEIPVAGGSF+YLRVELGDF+AF+AAGNILLE ++G A + RSW+SY A+L
Sbjct: 135 LCYAEFGVEIPVAGGSFSYLRVELGDFIAFIAAGNILLEAMVGAAGLGRSWSSYLASLVK 194
Query: 184 KQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFI 243
+ FRI V S + + LDP+AV V V +A+ TK +S N I S++ V +I+FI
Sbjct: 195 NDSDYFRIKVDSFAKGFDLLDPVAVAVLLVANGIAMTGTKRTSWLNLITSMVTVCIIVFI 254
Query: 244 IIGGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLV 303
++ GF ++ T N F P+G +GV +++AV++++Y GFD V+ MAEET+ P++DIPIGLV
Sbjct: 255 VVVGFTHSKTSNLVPFFPYGAKGVVQSAAVVYWSYTGFDMVANMAEETEKPSRDIPIGLV 314
Query: 304 GSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVL 363
GSM++ T+ YCL+A+AL +M Y I+ +A +SVAF +G WAKY+V ALKGMTT L
Sbjct: 315 GSMSMITVVYCLMALALTMMVKYTEIDANAAYSVAFAQIGMKWAKYLVGICALKGMTTSL 374
Query: 364 LVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNL 423
LV ++GQARY T IAR+HM+PPW A VH KTGTP+ AT+++ ++II+FFT L VLS++
Sbjct: 375 LVGSLGQARYTTQIARSHMIPPWFALVHPKTGTPIYATLLVTILSSIISFFTSLEVLSSV 434
Query: 424 LSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGW 483
S +TLFIFMLVAVALLVRRYYV VT A +K + + LI+ SSI +A W GW
Sbjct: 435 FSFATLFIFMLVAVALLVRRYYVKDVTPEAGLLKFLGFLFLIIASSIGVSALWNSGVKGW 494
Query: 484 IGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFAR 543
I Y +T IWF+GTL LA+ +P+ R PK+WGVPLVPWLPS SIA+N+FL+GS+ +F R
Sbjct: 495 IAYTVTGVIWFIGTLGLAL-LPKYRVPKVWGVPLVPWLPSFSIAMNLFLIGSLGYVAFLR 553
Query: 544 FGVWTVILLLYYIFFGLHASYDTAKASGENDRAAG 578
F + T+++LLYY+F GLHA+YD A E + G
Sbjct: 554 FIICTMVMLLYYLFVGLHATYDVAHQPLEEAKFEG 588
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Permease involved in the transport of the cationic neutral or acidic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana GN=CAT6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1212), Expect = e-132, Method: Compositional matrix adjust.
Identities = 252/575 (43%), Positives = 369/575 (64%), Gaps = 23/575 (4%)
Query: 28 FRSWGNYVQALKATPLRLKDRVLTRSLDTTEIHEIKARSEHEMKKTLTWWDLIWFGIGAV 87
F S Y+ +L ATP RL R ++ S + E+ ++A S +M++TL W+DLI GIG +
Sbjct: 15 FSSLRVYLNSLSATPSRLSRRAISVSTSSDEMSRVRAVSGEQMRRTLRWYDLIGLGIGGM 74
Query: 88 IGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVEL 147
+GAG+FV TG+ +R +AGP++V+S+ ++GL A+LS FCYTEFAV +PVAGG+F+Y+R+
Sbjct: 75 VGAGVFVTTGRASRLDAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIRITF 134
Query: 148 GDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIA 207
G+F AF N++++YV+ AAV+RS+T+Y T +R +V +P+ + ++DP+A
Sbjct: 135 GEFPAFFTGANLVMDYVMSNAAVSRSFTAYLGTAFGISTSKWRFVVSGLPKGFNEIDPVA 194
Query: 208 VGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFANADTKNYKA--------- 258
V V VI ++ ST+ SS+ N I + H+ I F+I+ GF D+KN +
Sbjct: 195 VLVVLVITVIICCSTRESSKVNMIMTAFHIAFIFFVIVMGFIKGDSKNLSSPANPEHPSG 254
Query: 259 FAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAI 318
F PFG GVF +A+++ +YIG+DAVSTMAEE +NP KDIP+G+ GS+A+ T+ YCL+A+
Sbjct: 255 FFPFGAAGVFNGAAMVYLSYIGYDAVSTMAEEVENPVKDIPVGVSGSVAIVTVLYCLMAV 314
Query: 319 ALCLMQPYYAINVDAPFSVAFE-AVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHI 377
++ ++ PY I+ +APFS AF + GW+W VV GA G+ T LLV+ +GQARY+ I
Sbjct: 315 SMSMLLPYDLIDPEAPFSAAFRGSNGWEWVTKVVGIGASFGILTSLLVAMLGQARYMCVI 374
Query: 378 ARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAV 437
R+ ++P W A++H KT TPVNA+ + TA +A FT LNVL NL+SI TLF+F +VA
Sbjct: 375 GRSRVVPFWFAKIHPKTSTPVNASTFLGIFTAALALFTDLNVLLNLVSIGTLFVFYMVAN 434
Query: 438 ALLVRRYYVSGVTTTANQVKLIVCIL-LILISSIATAAYWGLSKHG-----WIGYCITVP 491
AL+ RRY G T +C L L I+S+ W L G +G V
Sbjct: 435 ALIFRRYVPVGPTKPWPT----LCFLTLFSITSLVFTLIWKLVPEGKPKAFMLGASAVVA 490
Query: 492 IWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARFGVWTVIL 551
I + L VPQAR P+LWGVP +PW P SI +NIFLLGS+D S+ RFG ++ ++
Sbjct: 491 IAIV--LSFQCVVPQARKPELWGVPFMPWTPCVSIFLNIFLLGSLDAPSYVRFGFFSGLI 548
Query: 552 LLYYIFFGLHASYDTAKASGENDRAAGGTWKQMEE 586
+L Y+F+G+HAS D A+A+G G K++ E
Sbjct: 549 VLVYLFYGVHASSD-AEANGSFGVKDGQVMKELIE 582
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Permease involved in the transport of the cationic neutral or acidic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SQZ0|CAAT7_ARATH Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis thaliana GN=CAT7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/570 (42%), Positives = 362/570 (63%), Gaps = 31/570 (5%)
Query: 25 EESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIHEIKARSEHEMKKTLTWWDLIWFGI 84
+ SF S Y+ +L TP R R ++ S E+ ++A S +M++TL W+DLI GI
Sbjct: 11 DTSFSSLRVYLNSLSDTPSRFSRRAVSVSTSYDEMSRVRAVSGEQMRRTLRWYDLIGLGI 70
Query: 85 GAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLR 144
G +IGAG+FV TG+ +R AGP++V+S+ ++GL A+LS FCYTEFAV +PVAGG+F+Y+R
Sbjct: 71 GGMIGAGVFVTTGRASRLYAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIR 130
Query: 145 VELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLD 204
+ G+F AF+ N++++YV+ AAV+R +T+Y + ++R IV +P + ++D
Sbjct: 131 ITFGEFPAFITGANLIMDYVLSNAAVSRGFTAYLGSAFGISTSEWRFIVSGLPNGFNEID 190
Query: 205 PIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFANADTKNY-------- 256
PIAV V + + ST+ SS+ N + + +H+ I+F+I+ GF+ D KN
Sbjct: 191 PIAVIVVLAVTFVICYSTRESSKVNMVLTALHIAFIVFVIVMGFSKGDVKNLTRPDNPEN 250
Query: 257 -KAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCL 315
F PFG GVF +A+++ +YIG+DAVSTMAEE K+P KDIP+G+ GS+A+ + YCL
Sbjct: 251 PSGFFPFGVSGVFNGAAMVYLSYIGYDAVSTMAEEVKDPVKDIPMGISGSVAIVIVLYCL 310
Query: 316 LAIALCLMQPYYAINVDAPFSVAF-EAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYL 374
+AI++ ++ PY I+ +AP+S AF ++ GW+W VV GA G+ T L+V+ +GQARY+
Sbjct: 311 MAISMSMLLPYDLIDAEAPYSAAFSKSEGWEWVTRVVGIGASFGILTSLIVAMLGQARYM 370
Query: 375 THIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFML 434
I R+ ++P W A+VH KT TPVNA+ + TA++A FT LNVL NL+SI TLF+F +
Sbjct: 371 CVIGRSRVVPIWFAKVHPKTSTPVNASAFLGIFTAVLALFTDLNVLLNLVSIGTLFVFYM 430
Query: 435 VAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWF 494
VA A++ RRY G T + + L I+SI W L+ G P WF
Sbjct: 431 VANAVIFRRYVTVGYTEPWPTLSFLC---LFSITSILFTLVWQLAPSG-------PPKWF 480
Query: 495 L-------GTLYLAVF---VPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARF 544
+ + +F VPQAR P+ WGVPL+PW P SI +NIFLLGS+D S+ RF
Sbjct: 481 ILGASTVTAIAIVQIFHCVVPQARIPEFWGVPLMPWTPCVSIFLNIFLLGSLDAPSYIRF 540
Query: 545 GVWTVILLLYYIFFGLHASYDTAKASGEND 574
G ++ +++L Y+F+ +HASYD A+ G D
Sbjct: 541 GFFSGLVVLVYVFYSVHASYD-AEGDGSLD 569
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Permease involved in the transport of the cationic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|P30823|CTR1_RAT High affinity cationic amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (688), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 180/597 (30%), Positives = 301/597 (50%), Gaps = 94/597 (15%)
Query: 64 ARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSV 123
+R E + + L +DL+ G+G+ +GAG++VL G AR+ AGPA+V+SF+++ L+++L+
Sbjct: 22 SREESRLSRCLNTYDLVALGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASVLAG 81
Query: 124 FCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCN 183
CY EF +P G ++ Y V +G+ AF+ N++L Y+IG ++VAR+W++ F L
Sbjct: 82 LCYGEFGARVPKTGSAYLYSYVTVGELWAFITGWNLILSYIIGTSSVARAWSATFDELIG 141
Query: 184 KQPEDF--RIIVHSMPEDYGQL-DPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVI 240
K +F + + + P Q D AV + ++ L + K S+ N I + I+V+V+
Sbjct: 142 KPIGEFSRQHMALNAPGVLAQTPDIFAVIIIIILTGLLTLGVKESAMVNKIFTCINVLVL 201
Query: 241 LFIIIGGFANADTKNYK----------------------AFAPFGTRGVFKASAVLFFAY 278
FI++ GF +N++ F PFG GV +A F+A+
Sbjct: 202 CFIMVSGFVKGSIENWQLTENKSSPLCGNNDTNVKYGEGGFMPFGFSGVLSGAATCFYAF 261
Query: 279 IGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVA 338
+GFD ++T EE KNP K IP+G+V S+ + +AY ++ AL LM PY+ ++ D+P A
Sbjct: 262 VGFDCIATTGEEVKNPQKAIPVGIVASLLICFIAYFGVSAALTLMMPYFCLDTDSPLPGA 321
Query: 339 FEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPV 398
F+ GW+ AKY VA G+L ++T L S R + +A ++ +LA+++ +T TP+
Sbjct: 322 FKYRGWEEAKYAVAVGSLCALSTSPLGSMFPMPRVIYAMAEDGLLFKFLAKINDRTKTPI 381
Query: 399 NATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRR---------YYVSGV 449
AT+ A++AF +L L +L+SI TL + LVA +LV R Y ++
Sbjct: 382 IATVTSGAIAAVMAFLFELKDLVDLMSIGTLLAYSLVAACVLVLRYQPEQPNLVYQMART 441
Query: 450 TTTANQVK---------------------------------------LIVCI----LLIL 466
T +QV LIV I L +L
Sbjct: 442 TDELDQVDQNEMVSASESQTGFLPAAEKFSLKTILSPKNMEPSKFSGLIVNISAGLLAVL 501
Query: 467 ISSIATAAYWGLSKHG----WIGYCITVPIWFLGTLYLAVFV-------PQARAPKLWGV 515
I ++ A G W + +T G++ L + V P+++ + V
Sbjct: 502 IITVCIVAVLGREALAEGTLWAVFVMT------GSVLLCMLVTGIIWRQPESKTKLSFKV 555
Query: 516 PLVPWLPSASIAINIFLLGSIDRASFARFGVWTVILLLYYIFFGLHASYDTAKASGE 572
P VP LP SI +NI+L+ +D+ ++ RF VW +I Y +G+ S + + A+G+
Sbjct: 556 PFVPVLPVLSIFVNIYLMMQLDQGTWVRFAVWMLIAFAIYFGYGVWHSEEASLAAGQ 612
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High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor. Rattus norvegicus (taxid: 10116) |
| >sp|B3TP03|CTR2_CHICK Low affinity cationic amino acid transporter 2 OS=Gallus gallus GN=SLC7A2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (687), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 182/622 (29%), Positives = 302/622 (48%), Gaps = 91/622 (14%)
Query: 67 EHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCY 126
E + + L+ DLI G+G+ +GAG++VL G+ A+ ++GP++V+SF+++ L+++++ CY
Sbjct: 26 EDSLCRCLSTLDLIALGVGSTLGAGVYVLAGEVAKSDSGPSIVVSFLIAALASVMAGLCY 85
Query: 127 TEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQP 186
EF +P G ++ Y V +G+ AF+ N++L YVIG ++VAR+W+ F L KQ
Sbjct: 86 AEFGARVPKTGSAYLYTYVAVGELWAFITGWNLILSYVIGTSSVARAWSGTFDELLGKQI 145
Query: 187 EDFRIIVHSMPEDYGQL----DPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILF 242
F M +Y L D AV + ++ L K S+ N I + I+++V+LF
Sbjct: 146 SHFFKTYFKM--NYPGLAEYPDFFAVFLILLLSGLLSFGVKESAWVNKIFTAINILVLLF 203
Query: 243 IIIGGFANADTKNYK-----------------------------AFAPFGTRGVFKASAV 273
++I GF D N++ F P+G G +A
Sbjct: 204 VMISGFVKGDVDNWRISEEYLINLSEIAENFSSYKNVTSIYGSGGFMPYGFTGTLAGAAT 263
Query: 274 LFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDA 333
F+A++GFD ++T EE +NP K IPIG+V S+ V +AY ++ AL LM PYY ++ +
Sbjct: 264 CFYAFVGFDCIATTGEEVRNPQKAIPIGIVVSLLVCFMAYFGVSAALTLMMPYYLLDEKS 323
Query: 334 PFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGK 393
P VAF VGW AKYVVA G+L ++T LL S R + +AR ++ +LA+V K
Sbjct: 324 PLPVAFAYVGWGPAKYVVAVGSLCALSTSLLGSMFPLPRIVFAMARDGLLFSFLAKVS-K 382
Query: 394 TGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRYYVS------ 447
P+ AT+ +AI+AF L L +++SI TL + LVA +L+ RY S
Sbjct: 383 RQAPLLATLTAGVISAIMAFLFDLKALVDIMSIGTLLAYSLVATCVLILRYQPSLTYEQP 442
Query: 448 ------------------------------------------GVTTTANQVKLIVCILLI 465
TA V V +L
Sbjct: 443 KYSPEKATLAASKRESAVSESQINMIQESHFSLQTLINPSSLPTEQTATTVNCFVGLLAF 502
Query: 466 LISSIATAAYWGL----SKHGW-IGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPW 520
L+ ++ +G + W I T+ + F+ T+ L PQ + + VPL+P+
Sbjct: 503 LVCGLSALTTYGTHFIANLEPWSICLLATLVVSFIVTILLIQRQPQNQQKVAFMVPLLPF 562
Query: 521 LPSASIAINIFLLGSIDRASFARFGVWTVILLLYYIFFGLHASYDTAKASGENDRAAGGT 580
LPS SI +NI+L+ + ++ RF +W + + Y +G+ S + + G+ D + +
Sbjct: 563 LPSLSILVNIYLMVQLSADTWIRFSIWMALGFIIYFTYGIRHSLEGRHSDGDGDSCSENS 622
Query: 581 WKQMEEGGAISSATDPNNTSAN 602
++E + +P N + +
Sbjct: 623 --GLQEKNPVEEVDEPENANES 642
|
Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Gallus gallus (taxid: 9031) |
| >sp|Q09143|CTR1_MOUSE High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (659), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 143/404 (35%), Positives = 234/404 (57%), Gaps = 23/404 (5%)
Query: 64 ARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSV 123
+R E + + L +DL+ G+G+ +GAG++VL G AR+ AGPA+V+SF+++ L+++L+
Sbjct: 22 SREESRLSRCLNTYDLVALGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASVLAG 81
Query: 124 FCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCN 183
CY EF +P G ++ Y V +G+ AF+ N++L Y+IG ++VAR+W++ F L
Sbjct: 82 LCYGEFGARVPKTGSAYLYSYVTVGELWAFITGWNLILSYIIGTSSVARAWSATFDELIG 141
Query: 184 KQPEDF--RIIVHSMPEDYGQL-DPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVI 240
K +F + + + P Q D AV + ++ L + K S+ N I + I+V+V+
Sbjct: 142 KPIGEFSRQHMALNAPGVLAQTPDIFAVIIIIILTGLLTLGVKESAMVNKIFTCINVLVL 201
Query: 241 LFIIIGGFANADTKNYK--------------------AFAPFGTRGVFKASAVLFFAYIG 280
FI++ GF KN++ F PFG GV +A F+A++G
Sbjct: 202 CFIVVSGFVKGSIKNWQLTEKNFSCNNNDTNVKYGEGGFMPFGFSGVLSGAATCFYAFVG 261
Query: 281 FDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFE 340
FD ++T EE KNP K IP+G+V S+ + +AY ++ AL LM PY+ +++D+P AF+
Sbjct: 262 FDCIATTGEEVKNPQKAIPVGIVASLLICFIAYFGVSAALTLMMPYFCLDIDSPLPGAFK 321
Query: 341 AVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNA 400
GW+ AKY VA G+L ++T LL S R + +A ++ +LA+++ +T TPV A
Sbjct: 322 HQGWEEAKYAVAIGSLCALSTSLLGSMFPMPRVIYAMAEDGLLFKFLAKINNRTKTPVIA 381
Query: 401 TIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRY 444
T+ A++AF +L L +L+SI TL + LVA +LV RY
Sbjct: 382 TVTSGAIAAVMAFLFELKDLVDLMSIGTLLAYSLVAACVLVLRY 425
|
High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor. Mus musculus (taxid: 10090) |
| >sp|Q8W4K3|CAAT4_ARATH Cationic amino acid transporter 4, vacuolar OS=Arabidopsis thaliana GN=CAT4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (657), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 176/576 (30%), Positives = 284/576 (49%), Gaps = 71/576 (12%)
Query: 50 LTRSLDTTEIHEIKARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVV 109
L R +H IK H++ K L+ DL+ G+G IGAG+++L G AR+ GPA+
Sbjct: 4 LVRRKQVDSVHLIKNDGPHQLAKKLSAVDLVAIGVGTTIGAGVYILVGTVAREHTGPALA 63
Query: 110 LSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAA 169
+SF ++G++A LS CY E A P AG ++ Y + LG+ +A++ ++L+Y IGG+A
Sbjct: 64 VSFFIAGVAAALSACCYAELASRCPSAGSAYHYAYICLGEGIAWLVGWALVLDYTIGGSA 123
Query: 170 VARSWT----SYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGS 225
+AR T S+F L N R ++P +DP A + ++ IL K S
Sbjct: 124 IARGITPNLASFFGGLDNLPVFLAR---QTIPGVGIVVDPCAALLIMIVTILLCFGIKES 180
Query: 226 SRFNYIASIIHVIVILFIII-GGFANADTK--NYK---AFAPFGTRGVFKASAVLFFAYI 279
S I + ++V ++FII+ GG+ T Y + PFG G+ SAV+FF+YI
Sbjct: 181 STVQAIVTSVNVCTLVFIIVVGGYLACKTGWVGYDLPSGYFPFGLNGILAGSAVVFFSYI 240
Query: 280 GFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAF 339
GFD V++ AEE KNP +D+P+G+ ++ + + Y LL++ + + PYY++N D P S AF
Sbjct: 241 GFDTVTSTAEEVKNPQRDLPLGIGIALLICCILYMLLSVVIVGLVPYYSLNPDTPISSAF 300
Query: 340 EAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVN 399
G WA Y++ GA+ + LL S + Q R +AR ++P + +++ +T PV
Sbjct: 301 GDSGMQWAAYILTTGAITALCASLLGSLLAQPRIFMAMARDGLLPAFFSEISPRTQVPVK 360
Query: 400 ATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRYY-VSGVTTTANQVKL 458
+TI + A +AFF + LS ++S+ TL F VAV +LV RY GV +++ L
Sbjct: 361 STIAIGVLAAALAFFMDVAQLSEMVSVGTLMAFTAVAVCVLVLRYVPPDGVPLSSSSQTL 420
Query: 459 -------------------------------------------------IVCILLILISS 469
+VCI ++ ++S
Sbjct: 421 SDTDESRAETENFLVDAIESSDSPLLGNETARDEKYFGKRRKIAAWSIALVCIGVLGLAS 480
Query: 470 IATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWG------VPLVPWLPS 523
A+A L C + LG+L ++ + +G P VP+LP
Sbjct: 481 AASAER--LPSFPRFTICGVSAVILLGSLITLGYIDEDEERHNFGHKGGFLCPFVPYLPV 538
Query: 524 ASIAINIFLLGSIDRASFARFGVWTVILLLYYIFFG 559
I IN +L+ +I ++ R +W +I + YIF+G
Sbjct: 539 LCILINTYLIINIGAGTWIRVLIWLLIGSMIYIFYG 574
|
Permease involved in the transport of the cationic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|P70423|CTR3_MOUSE Cationic amino acid transporter 3 OS=Mus musculus GN=Slc7a3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 177/570 (31%), Positives = 288/570 (50%), Gaps = 69/570 (12%)
Query: 67 EHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCY 126
E + + L+ DL+ G+G+ +GAG++VL G+ A+ +AGP++V+ F+V+ LS++L+ CY
Sbjct: 25 ETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVAALSSVLAGLCY 84
Query: 127 TEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLC-NKQ 185
EF +P +G ++ Y V +G+ AF N++L YVIG A+VAR+W+S F L N
Sbjct: 85 AEFGARVPGSGSAYLYSYVTVGELWAFTTGWNLILSYVIGTASVARAWSSAFDNLIGNHI 144
Query: 186 PEDFR-IIVHSMPEDYGQL-DPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFI 243
+ I+ MP + D A+ + ++ L V+ S+ + + ++++V+ F+
Sbjct: 145 SRTLKGTILLKMPHVLAEYPDFFALALVLLLTGLLVLGASKSALVTKVFTGMNLLVLSFV 204
Query: 244 IIGGFANADTKNYK-------------------------AFAPFGTRGVFKASAVLFFAY 278
II GF + +N+K F PFG G+ + +A F+A+
Sbjct: 205 IISGFIKGELRNWKLTKEDYCLTMSESNGTCSLDSMGSGGFMPFGLEGILRGAATCFYAF 264
Query: 279 IGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVA 338
+GFD ++T EE +NP + IP+G+V SM + LAY ++ AL LM PYY ++ ++P A
Sbjct: 265 VGFDCIATTGEEAQNPQRSIPMGIVISMFICFLAYFGVSSALTLMMPYYKLHPESPLPEA 324
Query: 339 FEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPV 398
F VGW+ A+Y+VA G+L ++T LL S R + +A ++ LA+VH T P+
Sbjct: 325 FSYVGWEPARYLVAIGSLCALSTSLLGSMFPMPRVMYSMAEDGLLFRVLAKVHSVTHIPI 384
Query: 399 NATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQV-- 456
AT+V A +AF +L L +L+SI TL LV++ +L+ RY + +
Sbjct: 385 VATLVSGVIAAFMAFLFELTDLVDLMSIGTLLAHSLVSICVLILRYQPDQEMKSVEEEME 444
Query: 457 ---------KLIVCILLILISSIAT------------------------AAYWGLSKHGW 483
KL V L ++SI T +W
Sbjct: 445 LQEETLEAEKLTVQALFCPVNSIPTLLSGRVVYVCSSLLAVLLTVLCLVLTWWTTPLRSG 504
Query: 484 IGYCITVPIWFLGTLYLAV-----FVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDR 538
+TV + LG L LA+ PQ R P + VP VP LP SI +N++L+ +
Sbjct: 505 DPVWVTVVVLILG-LILAISGVIWRQPQNRTPLHFKVPAVPLLPLVSIFVNVYLMMQMTA 563
Query: 539 ASFARFGVWTVILLLYYIFFGLHASYDTAK 568
++ARFG+W +I Y +G+ S K
Sbjct: 564 GTWARFGIWMLIGFAIYFGYGIQHSMKEVK 593
|
Mediates the uptake of the cationic amino acids arginine, lysine and ornithine in a sodium-independent manner. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| 224134585 | 602 | cationic amino acid transporter [Populus | 0.975 | 0.980 | 0.802 | 0.0 | |
| 225444009 | 606 | PREDICTED: high affinity cationic amino | 0.993 | 0.991 | 0.777 | 0.0 | |
| 255571330 | 587 | cationic amino acid transporter, putativ | 0.963 | 0.993 | 0.8 | 0.0 | |
| 30685317 | 594 | amino acid transporter 1 [Arabidopsis th | 0.981 | 1.0 | 0.749 | 0.0 | |
| 224120180 | 588 | cationic amino acid transporter [Populus | 0.958 | 0.986 | 0.783 | 0.0 | |
| 297804044 | 599 | hypothetical protein ARALYDRAFT_329490 [ | 0.963 | 0.973 | 0.759 | 0.0 | |
| 224123294 | 604 | cationic amino acid transporter [Populus | 0.983 | 0.985 | 0.757 | 0.0 | |
| 356525397 | 602 | PREDICTED: low affinity cationic amino a | 0.958 | 0.963 | 0.751 | 0.0 | |
| 449435540 | 582 | PREDICTED: cationic amino acid transport | 0.942 | 0.979 | 0.756 | 0.0 | |
| 449447719 | 584 | PREDICTED: cationic amino acid transport | 0.935 | 0.969 | 0.725 | 0.0 |
| >gi|224134585|ref|XP_002321859.1| cationic amino acid transporter [Populus trichocarpa] gi|222868855|gb|EEF05986.1| cationic amino acid transporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 974 bits (2519), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/596 (80%), Positives = 528/596 (88%), Gaps = 6/596 (1%)
Query: 3 VNDGDEGLRRRGC--SCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIH 60
++ +EGLRRRGC SC+KNDFLPEESF+S+GNY+QALK TP+R KDR+LTRS DTTEIH
Sbjct: 8 IDHQEEGLRRRGCGCSCSKNDFLPEESFQSFGNYLQALKETPMRFKDRLLTRSKDTTEIH 67
Query: 61 EIKARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAM 120
EIKARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTG EAR+ AGPAVVLS+VVSG+SAM
Sbjct: 68 EIKARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGLEAREHAGPAVVLSYVVSGVSAM 127
Query: 121 LSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFAT 180
LSVFCYTEFAVEIPVAGGSFAYLRVELGDF+AF+AAGNILLEYVIGGAAV+R+WTSYFAT
Sbjct: 128 LSVFCYTEFAVEIPVAGGSFAYLRVELGDFMAFIAAGNILLEYVIGGAAVSRAWTSYFAT 187
Query: 181 LCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVI 240
LCN +P+DFRII HS+P+DYG LDPIAV V VICILAV+STKGSSRFNY+ASIIHV+VI
Sbjct: 188 LCNHKPDDFRIIAHSLPDDYGHLDPIAVLVGVVICILAVLSTKGSSRFNYVASIIHVVVI 247
Query: 241 LFIIIGGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPI 300
LFII+ G A ADTKNY FAP G G+F ASAVLFFAY+GFDAVSTMAEETKNPA+DIPI
Sbjct: 248 LFIIVAGLAKADTKNYADFAPNGAHGIFTASAVLFFAYVGFDAVSTMAEETKNPARDIPI 307
Query: 301 GLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMT 360
GLVGSMA+TTLAYCLLA+ LCLM PY I+VDAPFSVAFE+VGW WAKY+VA GALKGMT
Sbjct: 308 GLVGSMAITTLAYCLLAVTLCLMVPYKMIDVDAPFSVAFESVGWGWAKYIVAAGALKGMT 367
Query: 361 TVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVL 420
TVLLVSAVGQARYLTHIARTHMMPPWLA V+ KTGTPVNAT+VML ATAIIAFFTKL++L
Sbjct: 368 TVLLVSAVGQARYLTHIARTHMMPPWLAHVNAKTGTPVNATVVMLAATAIIAFFTKLDIL 427
Query: 421 SNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSK 480
SNLLSISTLFIFMLVAV+LLVRRYYVSGVTT N+VKLIVCI+ IL+SSIATA WG S
Sbjct: 428 SNLLSISTLFIFMLVAVSLLVRRYYVSGVTTPVNRVKLIVCIVAILVSSIATALIWGTSD 487
Query: 481 HG-WIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRA 539
WIGY IT+PIWF TL L + VPQA+ PKLWGVPLVPWLPSASI IN+FLLGSID
Sbjct: 488 QASWIGYVITIPIWFFATLALKISVPQAKDPKLWGVPLVPWLPSASILINMFLLGSIDVQ 547
Query: 540 SFARFGVWTVILLLYYIFFGLHASYDTAKASGENDRAAGGTWKQMEEGGAISSATD 595
SF RF VWT ILL+YY+ FGLHASYDTAKASGEN G +K +E+ G +SS D
Sbjct: 548 SFKRFAVWTGILLIYYLLFGLHASYDTAKASGENKDEGG--FKNVED-GTVSSQND 600
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444009|ref|XP_002281463.1| PREDICTED: high affinity cationic amino acid transporter 1-like isoform 1 [Vitis vinifera] gi|359483932|ref|XP_003633038.1| PREDICTED: high affinity cationic amino acid transporter 1-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 964 bits (2492), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/608 (77%), Positives = 526/608 (86%), Gaps = 7/608 (1%)
Query: 1 MGVNDGDEGLRRRGCSCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIH 60
MGV + EG+RRRGCSC+K+DFLPEESF++WGNY +AL P RLKDR+LTRSLDTTE++
Sbjct: 1 MGV-EPSEGVRRRGCSCSKDDFLPEESFKTWGNYGRALAEIPARLKDRLLTRSLDTTEMN 59
Query: 61 EIKARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAM 120
EIKARS HEMKKTLTWWDL+WFGIGAVIGAGIFVLTG +AR AGPAVVLS+VVSG+SAM
Sbjct: 60 EIKARSAHEMKKTLTWWDLMWFGIGAVIGAGIFVLTGIQARDVAGPAVVLSYVVSGISAM 119
Query: 121 LSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFAT 180
LSVFCYTEFAVEIPVAGGSFAYLRVELGDF+AF+AAGNILLEYVIGGAAVARSWTSYFAT
Sbjct: 120 LSVFCYTEFAVEIPVAGGSFAYLRVELGDFMAFIAAGNILLEYVIGGAAVARSWTSYFAT 179
Query: 181 LCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVI 240
LCN +PEDFRII HS+ EDY QLDPIAVGV +IC+LAV STKGSSRFNYIASI HVIVI
Sbjct: 180 LCNHKPEDFRIIAHSLKEDYNQLDPIAVGVITIICLLAVFSTKGSSRFNYIASIFHVIVI 239
Query: 241 LFIIIGGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPI 300
LFIII G ADT NY FAP G RG+FK+SAVLFFAYIGFDAVSTMAEETKNP +DIPI
Sbjct: 240 LFIIIAGLCKADTSNYTPFAPNGVRGIFKSSAVLFFAYIGFDAVSTMAEETKNPGRDIPI 299
Query: 301 GLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMT 360
GLVGSM++TTLAYCLLA+ LCLMQ Y I+ DAPFSVAFEAVGW+WAKY+VA GALKGMT
Sbjct: 300 GLVGSMSITTLAYCLLAVTLCLMQKYTDIDKDAPFSVAFEAVGWNWAKYIVAAGALKGMT 359
Query: 361 TVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVL 420
TVLLVSAVGQARYLTHIARTHMMPPWLA V+ +TGTPVNATIVML ATAIIAFFT L +L
Sbjct: 360 TVLLVSAVGQARYLTHIARTHMMPPWLAHVNSRTGTPVNATIVMLVATAIIAFFTDLGIL 419
Query: 421 SNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSK 480
SNLLSISTLFIFMLVAV LLVRRYYVS VTT N+ KLIVC++LI+ SSIATA YWGLS+
Sbjct: 420 SNLLSISTLFIFMLVAVGLLVRRYYVSNVTTPTNRNKLIVCLVLIIGSSIATATYWGLSE 479
Query: 481 HGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRAS 540
GW+GY +TVPIW L T+ L FVP+AR PKLWGVPLVPWLPSASIAINIFLLGSID+AS
Sbjct: 480 TGWVGYVVTVPIWLLATVALWAFVPKAREPKLWGVPLVPWLPSASIAINIFLLGSIDKAS 539
Query: 541 FARFGVWTVILLLYYIFFGLHASYDTAKASGENDRAAGGTWKQMEEGGAI-----SSATD 595
F RFG+WT +L++YY FFGLHASYDTAK S + +K++EEG S+ +
Sbjct: 540 FERFGIWTAVLMVYYFFFGLHASYDTAKESAKVTHET-TQYKKVEEGAVTPSVDSSTGVN 598
Query: 596 PNNTSANP 603
+N S NP
Sbjct: 599 ASNASTNP 606
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571330|ref|XP_002526614.1| cationic amino acid transporter, putative [Ricinus communis] gi|223534054|gb|EEF35773.1| cationic amino acid transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/585 (80%), Positives = 525/585 (89%), Gaps = 2/585 (0%)
Query: 3 VNDGDEGLRRRGCSCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIHEI 62
V DGDEG+RRRGCSCTK+DF+PEESF+S G+Y++AL TP+R KDR+L RS+D+TEI+EI
Sbjct: 4 VGDGDEGVRRRGCSCTKSDFIPEESFQSMGSYLKALSETPMRFKDRLLARSMDSTEINEI 63
Query: 63 KARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLS 122
KARSEH+MKK LTWWDLIWFGIGAVIGAGIFVLTG EA+ AGPAVVLS+VVSG+SAMLS
Sbjct: 64 KARSEHQMKKNLTWWDLIWFGIGAVIGAGIFVLTGLEAQSVAGPAVVLSYVVSGISAMLS 123
Query: 123 VFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLC 182
VFCYTEFAVEIPVAGGSFAYLRVELGDF+AF+AAGNILLEYVIGGAAVAR+WTSYFATL
Sbjct: 124 VFCYTEFAVEIPVAGGSFAYLRVELGDFMAFIAAGNILLEYVIGGAAVARAWTSYFATLL 183
Query: 183 NKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILF 242
N +PE+FRII HS+PEDYG LDPIAV V AVIC+LAV+STKGSSRFNYIASIIH++VILF
Sbjct: 184 NHKPENFRIIAHSLPEDYGHLDPIAVVVIAVICVLAVLSTKGSSRFNYIASIIHIVVILF 243
Query: 243 IIIGGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGL 302
III G NADTKNY+ FAP+G RGVF ASAVLFFAY+GFDAVSTMAEETK+PA+DIPIGL
Sbjct: 244 IIIAGLVNADTKNYRDFAPYGARGVFNASAVLFFAYVGFDAVSTMAEETKDPARDIPIGL 303
Query: 303 VGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTV 362
VGSMA+TTL YCL+AI LCLM PY I+ DAPFSVAF++VGW WAKY+V+ GALKGMTTV
Sbjct: 304 VGSMALTTLLYCLMAITLCLMVPYKQIDPDAPFSVAFQSVGWGWAKYIVSLGALKGMTTV 363
Query: 363 LLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSN 422
LLVSAVGQARYLTHIARTHMMPPWLA V+ KTGTPVNATIVMLTATA+IAFFTKL VLSN
Sbjct: 364 LLVSAVGQARYLTHIARTHMMPPWLAHVNAKTGTPVNATIVMLTATAVIAFFTKLEVLSN 423
Query: 423 LLSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHG 482
LLSISTLFIFMLVA+ALLVRRYYVSG TT+AN++KL VC+++IL++SIA AA WG G
Sbjct: 424 LLSISTLFIFMLVALALLVRRYYVSGETTSANRLKLTVCLVVILVTSIANAAIWGAQVDG 483
Query: 483 WIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFA 542
WIGY ITVPIWF TL ++VFVPQARAPKLWGVPLVPWLPSAS+ INIFLLGSIDR SF
Sbjct: 484 WIGYAITVPIWFFATLGISVFVPQARAPKLWGVPLVPWLPSASVFINIFLLGSIDRDSFV 543
Query: 543 RFGVWTVILLLYYIFFGLHASYDTAKASGENDRAAGGTWKQMEEG 587
RF +WT ILL+YY FGLHASYDTAK S E +R G ++MEEG
Sbjct: 544 RFAIWTGILLIYYFLFGLHASYDTAKES-EANRGLEGL-QKMEEG 586
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30685317|ref|NP_193844.2| amino acid transporter 1 [Arabidopsis thaliana] gi|75297892|sp|Q84MA5.1|CAAT1_ARATH RecName: Full=Cationic amino acid transporter 1; AltName: Full=Amino acid transporter 1 gi|30102670|gb|AAP21253.1| At4g21120 [Arabidopsis thaliana] gi|110743257|dbj|BAE99519.1| amino acid transport protein AAT1 [Arabidopsis thaliana] gi|332659005|gb|AEE84405.1| amino acid transporter 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2441), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/602 (74%), Positives = 518/602 (86%), Gaps = 8/602 (1%)
Query: 1 MGVNDGDEGLRRRGCSCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIH 60
M GD+GLRRRGCSCTK+DFLPEESF+S GNY++ALK TP R DR++TRSLD+ EI+
Sbjct: 1 MASGGGDDGLRRRGCSCTKDDFLPEESFQSMGNYLKALKETPSRFMDRIMTRSLDSDEIN 60
Query: 61 EIKARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAM 120
E+KARS HEMKKTLTWWDL+WFGIGAVIG+GIFVLTG EAR +GPAVVLS+VVSG+SAM
Sbjct: 61 EMKARSGHEMKKTLTWWDLMWFGIGAVIGSGIFVLTGLEARNHSGPAVVLSYVVSGVSAM 120
Query: 121 LSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFAT 180
LSVFCYTEFAVEIPVAGGSFAYLRVELGDF+AF+AAGNI+LEYV+GGAAVARSWTSYFAT
Sbjct: 121 LSVFCYTEFAVEIPVAGGSFAYLRVELGDFMAFIAAGNIILEYVVGGAAVARSWTSYFAT 180
Query: 181 LCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVI 240
L N +PEDFRIIVH + EDY LDPIAVGV A+IC+LAVV TKGSSRFNYIASIIH++VI
Sbjct: 181 LLNHKPEDFRIIVHKLGEDYSHLDPIAVGVCAIICVLAVVGTKGSSRFNYIASIIHMVVI 240
Query: 241 LFIIIGGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPI 300
LF+II GF AD KNY F P+G RGVFK++AVLFFAYIGFDAVSTMAEETKNP +DIPI
Sbjct: 241 LFVIIAGFTKADVKNYSDFTPYGVRGVFKSAAVLFFAYIGFDAVSTMAEETKNPGRDIPI 300
Query: 301 GLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMT 360
GLVGSM VTT+ YCL+A+ LCLMQPY I+ DAPFSVAF AVGWDWAKY+VAFGALKGMT
Sbjct: 301 GLVGSMVVTTVCYCLMAVTLCLMQPYQQIDPDAPFSVAFSAVGWDWAKYIVAFGALKGMT 360
Query: 361 TVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVL 420
TVLLV A+GQARY+THIAR HMMPPWLAQV+ KTGTP+NAT+VML ATA+IAFFTKL +L
Sbjct: 361 TVLLVGAIGQARYMTHIARAHMMPPWLAQVNAKTGTPINATVVMLAATALIAFFTKLKIL 420
Query: 421 SNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSK 480
++LLS+STLFIFM VAVALLVRRYYV+G T+T ++ K +V + LIL SS ATA YW L +
Sbjct: 421 ADLLSVSTLFIFMFVAVALLVRRYYVTGETSTRDRNKFLVFLGLILASSTATAVYWALEE 480
Query: 481 HGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRAS 540
GWIGYCITVPIWFL T+ + VPQARAPK+WGVPLVPWLPSASIAINIFLLGSID S
Sbjct: 481 EGWIGYCITVPIWFLSTVAMKFLVPQARAPKIWGVPLVPWLPSASIAINIFLLGSIDTKS 540
Query: 541 FARFGVWTVILLLYYIFFGLHASYDTAKASGENDRAAGGTWKQMEEGGAISSATDPNNTS 600
F RF +WT ILL+YY+ FGLHA+YDTAKA+ + +A ++ EEGG ++ N+ S
Sbjct: 541 FVRFAIWTGILLIYYVLFGLHATYDTAKATLKEKQAL----QKAEEGGVVAD----NSCS 592
Query: 601 AN 602
A
Sbjct: 593 AT 594
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120180|ref|XP_002318265.1| cationic amino acid transporter [Populus trichocarpa] gi|222858938|gb|EEE96485.1| cationic amino acid transporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/586 (78%), Positives = 515/586 (87%), Gaps = 6/586 (1%)
Query: 10 LRRR---GCSCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIHEIKARS 66
+RRR GCSCTKNDFLPEESF+S GNY+QALK TP+R KDR+LTRSLD+TE+HEIK+RS
Sbjct: 1 MRRRRGCGCSCTKNDFLPEESFQSIGNYLQALKETPMRFKDRLLTRSLDSTELHEIKSRS 60
Query: 67 EHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCY 126
+HEMKK LTWWDLIWFGIGAVIGAGIFVLTG EA++ AGPAVVLS+VVSG+SAMLSVFCY
Sbjct: 61 DHEMKKNLTWWDLIWFGIGAVIGAGIFVLTGLEAKEHAGPAVVLSYVVSGVSAMLSVFCY 120
Query: 127 TEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQP 186
TEFAVEIPVAGGSFAYLRVELGDF+AF+AAGNI+LEYVIGGAAVARSWTSYFATLCN +P
Sbjct: 121 TEFAVEIPVAGGSFAYLRVELGDFMAFIAAGNIILEYVIGGAAVARSWTSYFATLCNHKP 180
Query: 187 EDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIG 246
+DFRII HS+PEDYG LDPI+V V A IC+LAV+STKGSSRFNY+ASIIHV+VILFII+
Sbjct: 181 DDFRIIAHSLPEDYGHLDPISVFVCAAICVLAVLSTKGSSRFNYVASIIHVVVILFIIVA 240
Query: 247 GFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSM 306
G A ADTKNY F+P G RG+F ASAVLFFAYIGFDAV+TMAEET+NPA+DIPIGLVGSM
Sbjct: 241 GLAKADTKNYADFSPNGARGIFVASAVLFFAYIGFDAVATMAEETRNPARDIPIGLVGSM 300
Query: 307 AVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVS 366
++TT+AYCL+A+ LCLM PY I+ DAPFSVAFE VGW WAKYVVA GALKGMTTVLLVS
Sbjct: 301 SITTIAYCLMAVTLCLMVPYKKIDEDAPFSVAFETVGWGWAKYVVAAGALKGMTTVLLVS 360
Query: 367 AVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSI 426
AVGQARYLTHIARTHMMPPWLA V+ +TGTPVNATIVML ATAI+ FFTKL++LSNLLSI
Sbjct: 361 AVGQARYLTHIARTHMMPPWLAHVNERTGTPVNATIVMLAATAIVGFFTKLDILSNLLSI 420
Query: 427 STLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLS-KHGWIG 485
STLFIFMLVA+ALLVRRYYVSG+TT N+VKLI+CI+ IL SSIATA +WG + + W+G
Sbjct: 421 STLFIFMLVALALLVRRYYVSGITTQENRVKLIMCIVAILGSSIATAVFWGTADEDSWLG 480
Query: 486 YCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARFG 545
Y IT+P+WF TL L + VPQAR PKLWGVPLVPWLPSASI INIFLLGSID+ SF RF
Sbjct: 481 YVITIPLWFCATLALKLLVPQARDPKLWGVPLVPWLPSASILINIFLLGSIDKKSFIRFA 540
Query: 546 VWTVILLLYYIFFGLHASYDTAKASGENDRAAGGTWKQMEEGGAIS 591
WT LL+YY FGLHASYDTAKASGEN G K +EEG S
Sbjct: 541 AWTGFLLVYYFLFGLHASYDTAKASGENKVEDG--LKNVEEGAVPS 584
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804044|ref|XP_002869906.1| hypothetical protein ARALYDRAFT_329490 [Arabidopsis lyrata subsp. lyrata] gi|297315742|gb|EFH46165.1| hypothetical protein ARALYDRAFT_329490 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/587 (75%), Positives = 513/587 (87%), Gaps = 4/587 (0%)
Query: 6 GDEGLRRRGCSCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIHEIKAR 65
GD+GLRRRGCSCTK+DFLPEESF+S GNY++ALK TP R DR++TRSLD+ EI+E+KAR
Sbjct: 8 GDDGLRRRGCSCTKDDFLPEESFQSMGNYLKALKETPSRFMDRIMTRSLDSDEINEMKAR 67
Query: 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFC 125
S HEMKKTLTWWDL+WFGIGAVIG+GIFVLTG EAR +GPAVVLS+VVSG+SAMLSVFC
Sbjct: 68 SGHEMKKTLTWWDLMWFGIGAVIGSGIFVLTGLEARNASGPAVVLSYVVSGVSAMLSVFC 127
Query: 126 YTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQ 185
YTEFAVEIPVAGGSFAYLRVELGDF+AF+AAGNI+LEYV+GGAAVARSWTSYFATL N +
Sbjct: 128 YTEFAVEIPVAGGSFAYLRVELGDFMAFIAAGNIILEYVVGGAAVARSWTSYFATLLNHK 187
Query: 186 PEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIII 245
PEDFRII HS+ EDY LDPIAVGV A+IC+LAV+ TKGSSRFNYIASIIH++VILF+II
Sbjct: 188 PEDFRIIAHSLGEDYSHLDPIAVGVCAIICVLAVLGTKGSSRFNYIASIIHMVVILFVII 247
Query: 246 GGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGS 305
GF AD KNY F P+G RGVFK++AVLFFAYIGFDAVSTMAEETKNP +DIPIGLVGS
Sbjct: 248 AGFTKADVKNYSDFTPYGVRGVFKSAAVLFFAYIGFDAVSTMAEETKNPGRDIPIGLVGS 307
Query: 306 MAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLV 365
M VTT+ YCL+A+ALCLMQPY I+ DAPFSVAF AVGWDWAKY+VAFGALKGMTTVLLV
Sbjct: 308 MVVTTVCYCLMAVALCLMQPYQQIDPDAPFSVAFSAVGWDWAKYIVAFGALKGMTTVLLV 367
Query: 366 SAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLS 425
A+GQARY+THIAR HMMPPWLAQV+ KTGTP+NAT+VML ATA+IAFFTKL +L++LLS
Sbjct: 368 GAIGQARYMTHIARAHMMPPWLAQVNAKTGTPINATVVMLAATALIAFFTKLKILADLLS 427
Query: 426 ISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIG 485
+STLFIFM VAVALLVRRYYV+G T++ ++ K +V + LIL SS AT YW L K GWIG
Sbjct: 428 VSTLFIFMFVAVALLVRRYYVTGETSSRDRNKFLVLLGLILASSTATGVYWALEKEGWIG 487
Query: 486 YCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARFG 545
YCITVPIWFL T+ + VPQARAPK+WGVPLVPWLPSASIAINIFLLGSID+ SF RF
Sbjct: 488 YCITVPIWFLSTVGMKFLVPQARAPKIWGVPLVPWLPSASIAINIFLLGSIDKKSFVRFA 547
Query: 546 VWTVILLLYYIFFGLHASYDTAKASGENDRAAGGTWKQMEEGGAISS 592
+WT ILL+YY+ FGLHA+YDTAKA+ + T ++ EEGG ++
Sbjct: 548 IWTGILLVYYVLFGLHATYDTAKATLKEKL----TLQKAEEGGVVAD 590
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123294|ref|XP_002319043.1| cationic amino acid transporter [Populus trichocarpa] gi|222857419|gb|EEE94966.1| cationic amino acid transporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/598 (75%), Positives = 512/598 (85%), Gaps = 3/598 (0%)
Query: 5 DGDEGLRRRGCSCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIHEIKA 64
D EG+++RGCSCTK+DFLPEESFRSW NYV A++ TP+R DR+LTRSLD+TE++EIK+
Sbjct: 7 DRGEGIKKRGCSCTKDDFLPEESFRSWTNYVHAIRQTPVRFSDRLLTRSLDSTELNEIKS 66
Query: 65 RSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVF 124
RSEH+MKK LTWWDL+WFG+GAV+GAGIFVLTG EAR+ GPAVVLS+VVSG+SAMLSVF
Sbjct: 67 RSEHDMKKNLTWWDLMWFGVGAVVGAGIFVLTGLEARENTGPAVVLSYVVSGVSAMLSVF 126
Query: 125 CYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNK 184
CYTEFAVEIPVAGGSFAYLRVELGDF+AF+AAGNILLEYVIGGAAVARSWTSYFATLCN
Sbjct: 127 CYTEFAVEIPVAGGSFAYLRVELGDFMAFIAAGNILLEYVIGGAAVARSWTSYFATLCNH 186
Query: 185 QPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFII 244
QP+DFRII HS+P+DYG LDPIAV VS++IC+LAV+STKGSSRFNYI SI+HV VI+FII
Sbjct: 187 QPDDFRIIAHSLPDDYGHLDPIAVVVSSLICVLAVLSTKGSSRFNYITSIMHVAVIVFII 246
Query: 245 IGGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVG 304
I G AD NYK F P+ RG+F SAVLFFAY+GFDAVSTMAEET+NPA+DIPIGL+G
Sbjct: 247 IAGLTKADRGNYKPFMPYDVRGIFVGSAVLFFAYVGFDAVSTMAEETENPARDIPIGLLG 306
Query: 305 SMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLL 364
SM + T+AYCLLA LCLM PY ++ +A FS AF+ VG WAKY+VA AL GMTT LL
Sbjct: 307 SMTIVTVAYCLLAATLCLMVPYKQLDGEAAFSSAFDYVGLHWAKYIVALCALAGMTTALL 366
Query: 365 VSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLL 424
VSAVGQARYLTHIARTHMMPPWLA V+ KTGTPVNAT++ML ATAI+AFFTKLN+LSNLL
Sbjct: 367 VSAVGQARYLTHIARTHMMPPWLAHVNAKTGTPVNATVIMLGATAIVAFFTKLNILSNLL 426
Query: 425 SISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWI 484
SISTLFIF LVAVALL RRYYVSGVTT N +K I+CI IL SS AT+ WGL GW+
Sbjct: 427 SISTLFIFTLVAVALLGRRYYVSGVTTPVNHIKFILCIATILGSSTATSIIWGLGGDGWV 486
Query: 485 GYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARF 544
GY ITVPIWFLGTL L V VPQAR PKLWGVPLVPWLPSASI INIFLLGSID+ASF RF
Sbjct: 487 GYVITVPIWFLGTLALEVLVPQARDPKLWGVPLVPWLPSASIFINIFLLGSIDKASFERF 546
Query: 545 GVWTVILLLYYIFFGLHASYDTAKASGENDRAAGGTWKQMEEGGAISSATDPNNTSAN 602
GVWT ILL+YY FGLHASYDTAK SGEN A G WK+MEE G +SS +P + +AN
Sbjct: 547 GVWTGILLIYYFLFGLHASYDTAKESGENKAADG--WKKMEE-GVVSSQVEPESLNAN 601
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525397|ref|XP_003531311.1| PREDICTED: low affinity cationic amino acid transporter 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/583 (75%), Positives = 493/583 (84%), Gaps = 3/583 (0%)
Query: 7 DEGLRRRGCSCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIHEIKARS 66
D G+RRRGC+ +NDF PEESF+SWGNY +A+ TP RLKDRV+TRS D TE+ E+KARS
Sbjct: 8 DGGVRRRGCTFRRNDFFPEESFKSWGNYARAVLETPWRLKDRVVTRSEDQTELVEMKARS 67
Query: 67 EHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCY 126
HEMKKTL WWDL+WFGIGAVIG+GIFVLTG EAR GPAVVLS+VVSG+SA+ SVFCY
Sbjct: 68 NHEMKKTLNWWDLMWFGIGAVIGSGIFVLTGLEARTAVGPAVVLSYVVSGVSALFSVFCY 127
Query: 127 TEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQP 186
TEFAVEIPVAGGSFAYLRVELGDFVA++AAGNILLEYVIGGAAVARSWTSYFATLC K P
Sbjct: 128 TEFAVEIPVAGGSFAYLRVELGDFVAYIAAGNILLEYVIGGAAVARSWTSYFATLCGKHP 187
Query: 187 EDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIG 246
+DFRII H+M +YG LDPIA+GV I ILAV STKGSS FN+IA+I H+IVI+FIII
Sbjct: 188 DDFRIIAHNMNPNYGHLDPIAIGVLIAITILAVYSTKGSSIFNFIATIFHLIVIVFIIIA 247
Query: 247 GFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSM 306
G A+T+NY F PFG RGVFKASAVLFFAY+GFDAVSTMAEETKNPA+DIPIGLVGSM
Sbjct: 248 GLTKANTENYANFTPFGVRGVFKASAVLFFAYVGFDAVSTMAEETKNPARDIPIGLVGSM 307
Query: 307 AVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVS 366
+TTLAYCLLA+ LCLMQ Y I+ DAP+SVAF AVG DWAKY+VAFGALKGMTTVLLVS
Sbjct: 308 VITTLAYCLLAVTLCLMQNYTDIDKDAPYSVAFSAVGMDWAKYIVAFGALKGMTTVLLVS 367
Query: 367 AVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSI 426
AVGQARYLTHIARTHMMPPW A V +TGTP+NATI ML ATA+IAFFT L +LSNLLSI
Sbjct: 368 AVGQARYLTHIARTHMMPPWFAHVDERTGTPMNATISMLAATAVIAFFTDLGILSNLLSI 427
Query: 427 STLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGY 486
STLFIFMLVA+ALLVRRYY SG+TT NQVKLIVC++LIL SS A +AYW S GW+GY
Sbjct: 428 STLFIFMLVALALLVRRYYSSGLTTKENQVKLIVCLMLILGSSCAISAYWA-SSDGWVGY 486
Query: 487 CITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARFGV 546
++VP+W LGT L +FVPQA+ PKLWGVPLVPWLPS SIAINIFLLGSID+ SF RFGV
Sbjct: 487 AVSVPLWILGTGGLWLFVPQAKQPKLWGVPLVPWLPSLSIAINIFLLGSIDKDSFIRFGV 546
Query: 547 WTVILLLYYIFFGLHASYDTAKA--SGENDRAAGGTWKQMEEG 587
WT LL+YY+ GLHASYDTAK S ++ W ++EEG
Sbjct: 547 WTGFLLVYYVLLGLHASYDTAKVFESKKSSVDVDKQWNKVEEG 589
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435540|ref|XP_004135553.1| PREDICTED: cationic amino acid transporter 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/571 (75%), Positives = 489/571 (85%), Gaps = 1/571 (0%)
Query: 1 MGVNDGD-EGLRRRGCSCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEI 59
MG+++ D EG+RRR C C K DFLPEESF+SWGNY ALKATP RL +R+ RS + TE+
Sbjct: 1 MGLSNSDGEGIRRRSCGCGKEDFLPEESFQSWGNYANALKATPFRLMNRLTARSAEQTEL 60
Query: 60 HEIKARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSA 119
E+KARSEHEMKK LTWWDLIWFG+GAVIGAGIFVLTG E R+ AGPAVVLS+VVSG+SA
Sbjct: 61 VEMKARSEHEMKKNLTWWDLIWFGVGAVIGAGIFVLTGLETRKHAGPAVVLSYVVSGVSA 120
Query: 120 MLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFA 179
MLSVFCYTEFAVEIP AGGSFAYLRVELGDFVAF+AAGNILLEYVIGGAAVARSWTSYFA
Sbjct: 121 MLSVFCYTEFAVEIPAAGGSFAYLRVELGDFVAFIAAGNILLEYVIGGAAVARSWTSYFA 180
Query: 180 TLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIV 239
TLCN +P DFRI + S DY +LDPIAV V VICI AV+STKGSSRFNYIASI+HVIV
Sbjct: 181 TLCNHRPNDFRIHIPSFAHDYNRLDPIAVVVIIVICIFAVMSTKGSSRFNYIASILHVIV 240
Query: 240 ILFIIIGGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIP 299
ILFI+I G A+ KN+ FAPFG RG+F ASAVLFFAY+GFDAVST+AEETKNP KDIP
Sbjct: 241 ILFIVIAGLTKANPKNFTPFAPFGPRGIFVASAVLFFAYVGFDAVSTLAEETKNPGKDIP 300
Query: 300 IGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGM 359
IGLVGSM +TT AYC+LA+ LCLMQ Y I+ DAPFSVAFEAVGW WAKY+VA GA+KGM
Sbjct: 301 IGLVGSMVITTSAYCILAVTLCLMQSYQQIDEDAPFSVAFEAVGWSWAKYIVAAGAIKGM 360
Query: 360 TTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNV 419
TTVLLVSAVGQARYLTHIARTHM+ PW A+V+ +TGTPVNAT M+ ATA+IAFFT L +
Sbjct: 361 TTVLLVSAVGQARYLTHIARTHMVSPWFAKVNERTGTPVNATTSMMAATAVIAFFTTLEI 420
Query: 420 LSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLS 479
LSNLLSISTLFIFMLVAV L+VRRYYVSG TT N+ KLI+C++LI+ SSI TAAYW S
Sbjct: 421 LSNLLSISTLFIFMLVAVGLIVRRYYVSGETTPLNRNKLIICLILIVGSSIGTAAYWASS 480
Query: 480 KHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRA 539
GWIG+ +T+PIWFL TL L + VPQA+ P++WGVPLVPWLPS SIAINIFLLGSID+A
Sbjct: 481 DDGWIGFAVTLPIWFLSTLALWLGVPQAKKPRVWGVPLVPWLPSLSIAINIFLLGSIDKA 540
Query: 540 SFARFGVWTVILLLYYIFFGLHASYDTAKAS 570
SF RFG+WT +LL+YY+ FGLHASYDTA S
Sbjct: 541 SFERFGIWTGVLLVYYLLFGLHASYDTAMES 571
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447719|ref|XP_004141615.1| PREDICTED: cationic amino acid transporter 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/569 (72%), Positives = 486/569 (85%), Gaps = 3/569 (0%)
Query: 4 NDGD--EGLRRRGCSCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIHE 61
+DG EG+RRR C C K+DFLPEESF+SW NY +ALKATP RL +R+ RS D TE+ E
Sbjct: 6 SDGSNGEGIRRRSCGCGKDDFLPEESFQSWENYTKALKATPFRLFNRLTARSADHTELVE 65
Query: 62 IKARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAML 121
+KARS+H+MKKTLTWWDL+WFG+GAVIGAGIFVLTG E ++ AGPAVVLS++VSG+SAML
Sbjct: 66 MKARSQHQMKKTLTWWDLMWFGVGAVIGAGIFVLTGLETKKHAGPAVVLSYIVSGISAML 125
Query: 122 SVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATL 181
SVFCYTEFAVEIP AGGSFAYLRVELGDFVAF+AAGNILLEY+IG AAVAR+WTSYFATL
Sbjct: 126 SVFCYTEFAVEIPAAGGSFAYLRVELGDFVAFIAAGNILLEYIIGSAAVARAWTSYFATL 185
Query: 182 CNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVIL 241
CN P DFR+ + + P+DY QLDPIA+ V +I I A+VSTKGSSR NY+ASI+HV+VI+
Sbjct: 186 CNHHPNDFRVHISAFPDDYNQLDPIAIVVILIIGIFALVSTKGSSRLNYVASILHVVVIV 245
Query: 242 FIIIGGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIG 301
FIII G A+ KN+ FAP+G RG+F ASAVLFFAY+GFDAVST+AEETKNPAKDIPIG
Sbjct: 246 FIIIAGLTQANPKNFTPFAPYGPRGIFVASAVLFFAYVGFDAVSTLAEETKNPAKDIPIG 305
Query: 302 LVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTT 361
LVGSM +TT+ YC+LA+ LCLMQPY I+ DAPFS+AFEAVGW WAKY+VA GA+KGMTT
Sbjct: 306 LVGSMVITTVLYCILAVTLCLMQPYQQIDADAPFSMAFEAVGWSWAKYIVAAGAIKGMTT 365
Query: 362 VLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLS 421
VLLV +VGQARYLTHIARTHM+ PW A+VH KTGTPVNAT ML ATA++AFFT +N+LS
Sbjct: 366 VLLVGSVGQARYLTHIARTHMVSPWFAKVHEKTGTPVNATATMLIATAMVAFFTSMNILS 425
Query: 422 NLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKH 481
NLLSISTLFIFMLVA+AL++RRYY S TTT+N+ KL++C++LI+ SS+ATA YW S +
Sbjct: 426 NLLSISTLFIFMLVAIALIIRRYYSSSETTTSNRNKLLICLVLIIGSSMATATYWSTSDN 485
Query: 482 GWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASF 541
WIGY +T+PIWF TL L + VPQA+ P++WGVPLVPWLPS SIAIN FLLGSIDRASF
Sbjct: 486 -WIGYAVTLPIWFFSTLALWLGVPQAKKPQVWGVPLVPWLPSLSIAINFFLLGSIDRASF 544
Query: 542 ARFGVWTVILLLYYIFFGLHASYDTAKAS 570
RFG+WT ILL+YY FGLHASYDTA S
Sbjct: 545 ERFGIWTGILLIYYFLFGLHASYDTAMNS 573
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| TAIR|locus:2127398 | 594 | AAT1 "AT4G21120" [Arabidopsis | 0.970 | 0.988 | 0.690 | 2.3e-220 | |
| TAIR|locus:2044682 | 569 | CAT5 "AT2G34960" [Arabidopsis | 0.923 | 0.982 | 0.554 | 1.5e-161 | |
| TAIR|locus:2020387 | 590 | CAT8 "cationic amino acid tran | 0.943 | 0.967 | 0.493 | 2.3e-142 | |
| TAIR|locus:2175488 | 583 | CAT6 "AT5G04770" [Arabidopsis | 0.915 | 0.950 | 0.396 | 8.1e-108 | |
| TAIR|locus:2075745 | 584 | CAT7 "cationic amino acid tran | 0.900 | 0.933 | 0.388 | 7.5e-105 | |
| DICTYBASE|DDB_G0279983 | 766 | ctrB "solute carrier family 7 | 0.809 | 0.639 | 0.310 | 7e-70 | |
| TIGR_CMR|BA_0818 | 467 | BA_0818 "amino acid permease f | 0.631 | 0.817 | 0.325 | 1.1e-60 | |
| WB|WBGene00016806 | 589 | C50D2.2 [Caenorhabditis elegan | 0.619 | 0.636 | 0.317 | 1.8e-60 | |
| UNIPROTKB|F1P388 | 624 | SLC7A1 "Uncharacterized protei | 0.307 | 0.298 | 0.397 | 4.7e-60 | |
| UNIPROTKB|G3MV65 | 622 | Slc7a1 "Solute carrier family | 0.320 | 0.311 | 0.381 | 6.9e-60 |
| TAIR|locus:2127398 AAT1 "AT4G21120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2128 (754.2 bits), Expect = 2.3e-220, P = 2.3e-220
Identities = 408/591 (69%), Positives = 464/591 (78%)
Query: 1 MGVNDGDEGLRRRGCSCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIH 60
M GD+GLRRRGCSCTK+DFLPEESF+S GNY++ALK TP R DR++TRSLD+ EI+
Sbjct: 1 MASGGGDDGLRRRGCSCTKDDFLPEESFQSMGNYLKALKETPSRFMDRIMTRSLDSDEIN 60
Query: 61 EIKARSEHEMKKTLTWWDLXXXXXXXXXXXXXXXLTGQEARQEAGPAVVLSFVVSGLSAM 120
E+KARS HEMKKTLTWWDL LTG EAR +GPAVVLS+VVSG+SAM
Sbjct: 61 EMKARSGHEMKKTLTWWDLMWFGIGAVIGSGIFVLTGLEARNHSGPAVVLSYVVSGVSAM 120
Query: 121 LSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFAT 180
LSVFCYTEFAVEIPVAGGSFAYLRVELGDF+AF+AAGNI+LEYV+GGAAVARSWTSYFAT
Sbjct: 121 LSVFCYTEFAVEIPVAGGSFAYLRVELGDFMAFIAAGNIILEYVVGGAAVARSWTSYFAT 180
Query: 181 LCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYXXXXXXXXXX 240
L N +PEDFRIIVH + EDY LDPIAVGV A+IC+LAVV TKGSSRFNY
Sbjct: 181 LLNHKPEDFRIIVHKLGEDYSHLDPIAVGVCAIICVLAVVGTKGSSRFNYIASIIHMVVI 240
Query: 241 XXXXXXXXXNADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPI 300
AD KNY F P+G RGVFK++AVLFFAYIGFDAVSTMAEETKNP +DIPI
Sbjct: 241 LFVIIAGFTKADVKNYSDFTPYGVRGVFKSAAVLFFAYIGFDAVSTMAEETKNPGRDIPI 300
Query: 301 GLVGSMAVTTXXXXXXXXXXXXMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMT 360
GLVGSM VTT MQPY I+ DAPFSVAF AVGWDWAKY+VAFGALKGMT
Sbjct: 301 GLVGSMVVTTVCYCLMAVTLCLMQPYQQIDPDAPFSVAFSAVGWDWAKYIVAFGALKGMT 360
Query: 361 TVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVL 420
TVLLV A+GQARY+THIAR HMMPPWLAQV+ KTGTP+NAT+VML ATA+IAFFTKL +L
Sbjct: 361 TVLLVGAIGQARYMTHIARAHMMPPWLAQVNAKTGTPINATVVMLAATALIAFFTKLKIL 420
Query: 421 SNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKXXXXXXXXXXXXXATAAYWGLSK 480
++LLS+STLFIFM VAVALLVRRYYV+G T+T ++ K ATA YW L +
Sbjct: 421 ADLLSVSTLFIFMFVAVALLVRRYYVTGETSTRDRNKFLVFLGLILASSTATAVYWALEE 480
Query: 481 HGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRAS 540
GWIGYCITVPIWFL T+ + VPQARAPK+WGVPLVPWLPSASIAINIFLLGSID S
Sbjct: 481 EGWIGYCITVPIWFLSTVAMKFLVPQARAPKIWGVPLVPWLPSASIAINIFLLGSIDTKS 540
Query: 541 FARFGVWTVILLLYYIFFGLHASYDTAKASGENDRAAGGTWKQMEEGGAIS 591
F RF +WT ILL+YY+ FGLHA+YDTAKA+ + +A ++ EEGG ++
Sbjct: 541 FVRFAIWTGILLIYYVLFGLHATYDTAKATLKEKQAL----QKAEEGGVVA 587
|
|
| TAIR|locus:2044682 CAT5 "AT2G34960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1573 (558.8 bits), Expect = 1.5e-161, P = 1.5e-161
Identities = 311/561 (55%), Positives = 389/561 (69%)
Query: 8 EGLRRRGCSCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIHEIKARSE 67
EG R +K DF PEESF+S+G+Y AL T R K+R+++RS D E E+K +SE
Sbjct: 2 EGEERGYWRWSKRDFFPEESFQSFGSYRAALSQTCSRFKNRLVSRSDDENERFELKKQSE 61
Query: 68 HEMKKTLTWWDLXXXXXXXXXXXXXXXLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYT 127
HEMK+ LTWWDL LTGQEA ++AGPA+VLS+VVSGLSAMLSVFCYT
Sbjct: 62 HEMKRCLTWWDLVWFGFGSVIGAGIFVLTGQEAHEQAGPAIVLSYVVSGLSAMLSVFCYT 121
Query: 128 EFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPE 187
EFAVEIPVAGGSFAYLR+ELGDF AF+ AGNILLE ++G AAVAR+WTSYFATL N+ P
Sbjct: 122 EFAVEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGTAAVARAWTSYFATLLNRSPN 181
Query: 188 DFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYXXXXXXXXXXXXXXXXX 247
RI + + LDPIAV V A +A +ST+ +S N+
Sbjct: 182 ALRIKT-DLSSGFNLLDPIAVVVIAASATIASISTRKTSLLNWIASAINTLVIFFVIIAG 240
Query: 248 XXNADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMA 307
+ADT N F PFG GVF+A+AV++FAY GFD+++TMAEETKNP++DIPIGL+GSM+
Sbjct: 241 FIHADTSNLTPFLPFGPEGVFRAAAVVYFAYGGFDSIATMAEETKNPSRDIPIGLLGSMS 300
Query: 308 VTTXXXXXXXXXXXXMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSA 367
+ T MQ Y I+ +A +SVAF++VG W KY+VA GALKGMTTVLLV A
Sbjct: 301 IITVIYCLMALSLSMMQKYTDIDPNAAYSVAFQSVGMKWGKYLVALGALKGMTTVLLVGA 360
Query: 368 VGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSIS 427
+GQARY+THIARTHM+PP A VH KTGTP+NA +++ +A+IAFF+ L+VL++LLSIS
Sbjct: 361 LGQARYVTHIARTHMIPPIFALVHPKTGTPINANLLVAIPSALIAFFSGLDVLASLLSIS 420
Query: 428 TLFIFMLVAVALLVRRYYVSGVTTTANQVKXXXXXXXXXXXXXATAAYWGLSKHG-WIGY 486
TLFIF ++ +ALLVRRYYV T + +K T+AYWG+ + G WIGY
Sbjct: 421 TLFIFTMMPIALLVRRYYVRQDTPRVHLIKLITCLLFVVVSSMGTSAYWGMQRKGSWIGY 480
Query: 487 CITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARFGV 546
+TVP WFLGTL + FVPQ R PK+WGVPLVPWLP SIA NIFL+GS+ +F RFGV
Sbjct: 481 TVTVPFWFLGTLGIVFFVPQQRTPKVWGVPLVPWLPCLSIATNIFLMGSLGAMAFVRFGV 540
Query: 547 WTVILLLYYIFFGLHASYDTA 567
T+ +LLYY GLHA++D A
Sbjct: 541 CTLAMLLYYFLLGLHATFDMA 561
|
|
| TAIR|locus:2020387 CAT8 "cationic amino acid transporter 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1392 (495.1 bits), Expect = 2.3e-142, P = 2.3e-142
Identities = 282/572 (49%), Positives = 367/572 (64%)
Query: 7 DEGLRRRGCSCTKNDFLPEESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIHEIKARS 66
D RR K DF PE SF+S+ Y AL AT RL DR+L+RS D E+ + S
Sbjct: 18 DLSQRRSYWRWRKQDFFPEFSFQSFSTYKSALSATCPRLADRLLSRSSDAYELDAARRES 77
Query: 67 EHEMKKTLTWWDLXXXXXXXXXXXXXXXLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCY 126
E+ M++ LTWWDL +TGQEAR AGPAVVLS+ +SG+SA+LSV CY
Sbjct: 78 ENPMRRCLTWWDLLWLSFGSVVGSGVFVITGQEARVGAGPAVVLSYAISGVSALLSVLCY 137
Query: 127 TEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQP 186
EF VEIPVAGGSF+YLRVELGDF+AF+AAGNILLE ++G A + RSW+SY A+L
Sbjct: 138 AEFGVEIPVAGGSFSYLRVELGDFIAFIAAGNILLEAMVGAAGLGRSWSSYLASLVKNDS 197
Query: 187 EDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYXXXXXXXXXXXXXXXX 246
+ FRI V S + + LDP+AV V V +A+ TK +S N
Sbjct: 198 DYFRIKVDSFAKGFDLLDPVAVAVLLVANGIAMTGTKRTSWLNLITSMVTVCIIVFIVVV 257
Query: 247 XXXNADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSM 306
++ T N F P+G +GV +++AV++++Y GFD V+ MAEET+ P++DIPIGLVGSM
Sbjct: 258 GFTHSKTSNLVPFFPYGAKGVVQSAAVVYWSYTGFDMVANMAEETEKPSRDIPIGLVGSM 317
Query: 307 AVTTXXXXXXXXXXXXMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVS 366
++ T M Y I+ +A +SVAF +G WAKY+V ALKGMTT LLV
Sbjct: 318 SMITVVYCLMALALTMMVKYTEIDANAAYSVAFAQIGMKWAKYLVGICALKGMTTSLLVG 377
Query: 367 AVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSI 426
++GQARY T IAR+HM+PPW A VH KTGTP+ AT+++ ++II+FFT L VLS++ S
Sbjct: 378 SLGQARYTTQIARSHMIPPWFALVHPKTGTPIYATLLVTILSSIISFFTSLEVLSSVFSF 437
Query: 427 STLFIFMLVAVALLVRRYYVSGVTTTANQVKXXXXXXXXXXXXXATAAYWGLSKHGWIGY 486
+TLFIFMLVAVALLVRRYYV VT A +K +A W GWI Y
Sbjct: 438 ATLFIFMLVAVALLVRRYYVKDVTPEAGLLKFLGFLFLIIASSIGVSALWNSGVKGWIAY 497
Query: 487 CITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARFGV 546
+T IWF+GTL LA+ +P+ R PK+WGVPLVPWLPS SIA+N+FL+GS+ +F RF +
Sbjct: 498 TVTGVIWFIGTLGLAL-LPKYRVPKVWGVPLVPWLPSFSIAMNLFLIGSLGYVAFLRFII 556
Query: 547 WTVILLLYYIFFGLHASYDTAKASGENDRAAG 578
T+++LLYY+F GLHA+YD A E + G
Sbjct: 557 CTMVMLLYYLFVGLHATYDVAHQPLEEAKFEG 588
|
|
| TAIR|locus:2175488 CAT6 "AT5G04770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
Identities = 228/575 (39%), Positives = 328/575 (57%)
Query: 27 SFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIHEIKARSEHEMKKTLTWWDLXXXXXXX 86
SF S Y+ +L ATP RL R ++ S + E+ ++A S +M++TL W+DL
Sbjct: 14 SFSSLRVYLNSLSATPSRLSRRAISVSTSSDEMSRVRAVSGEQMRRTLRWYDLIGLGIGG 73
Query: 87 XXXXXXXXLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVE 146
TG+ +R +AGP++V+S+ ++GL A+LS FCYTEFAV +PVAGG+F+Y+R+
Sbjct: 74 MVGAGVFVTTGRASRLDAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIRIT 133
Query: 147 LGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPI 206
G+F AF N++++YV+ AAV+RS+T+Y T +R +V +P+ + ++DP+
Sbjct: 134 FGEFPAFFTGANLVMDYVMSNAAVSRSFTAYLGTAFGISTSKWRFVVSGLPKGFNEIDPV 193
Query: 207 AVGVSAVICILAVVSTKGSSRFNYXXXXXXXXXXXXXXXXXXXNADTKNYKA-------- 258
AV V VI ++ ST+ SS+ N D+KN +
Sbjct: 194 AVLVVLVITVIICCSTRESSKVNMIMTAFHIAFIFFVIVMGFIKGDSKNLSSPANPEHPS 253
Query: 259 -FAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTXXXXXXX 317
F PFG GVF +A+++ +YIG+DAVSTMAEE +NP KDIP+G+ GS+A+ T
Sbjct: 254 GFFPFGAAGVFNGAAMVYLSYIGYDAVSTMAEEVENPVKDIPVGVSGSVAIVTVLYCLMA 313
Query: 318 XXXXXMQPYYAINVDAPFSVAFEAV-GWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTH 376
+ PY I+ +APFS AF GW+W VV GA G+ T LLV+ +GQARY+
Sbjct: 314 VSMSMLLPYDLIDPEAPFSAAFRGSNGWEWVTKVVGIGASFGILTSLLVAMLGQARYMCV 373
Query: 377 IARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVA 436
I R+ ++P W A++H KT TPVNA+ + TA +A FT LNVL NL+SI TLF+F +VA
Sbjct: 374 IGRSRVVPFWFAKIHPKTSTPVNASTFLGIFTAALALFTDLNVLLNLVSIGTLFVFYMVA 433
Query: 437 VALLVRRYYVSGVTTTANQVKXXXXXXXXXXXXXATAAYWGLSKHG-----WIGYCITVP 491
AL+ RRY G T W L G +G V
Sbjct: 434 NALIFRRYVPVGPT---KPWPTLCFLTLFSITSLVFTLIWKLVPEGKPKAFMLGASAVVA 490
Query: 492 IWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARFGVWTVIL 551
I + L VPQAR P+LWGVP +PW P SI +NIFLLGS+D S+ RFG ++ ++
Sbjct: 491 IAIV--LSFQCVVPQARKPELWGVPFMPWTPCVSIFLNIFLLGSLDAPSYVRFGFFSGLI 548
Query: 552 LLYYIFFGLHASYDTAKASGENDRAAGGTWKQMEE 586
+L Y+F+G+HAS D A+A+G G K++ E
Sbjct: 549 VLVYLFYGVHASSD-AEANGSFGVKDGQVMKELIE 582
|
|
| TAIR|locus:2075745 CAT7 "cationic amino acid transporter 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
Identities = 219/564 (38%), Positives = 321/564 (56%)
Query: 25 EESFRSWGNYVQALKATPLRLKDRVLTRSLDTTEIHEIKARSEHEMKKTLTWWDLXXXXX 84
+ SF S Y+ +L TP R R ++ S E+ ++A S +M++TL W+DL
Sbjct: 11 DTSFSSLRVYLNSLSDTPSRFSRRAVSVSTSYDEMSRVRAVSGEQMRRTLRWYDLIGLGI 70
Query: 85 XXXXXXXXXXLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLR 144
TG+ +R AGP++V+S+ ++GL A+LS FCYTEFAV +PVAGG+F+Y+R
Sbjct: 71 GGMIGAGVFVTTGRASRLYAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIR 130
Query: 145 VELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLD 204
+ G+F AF+ N++++YV+ AAV+R +T+Y + ++R IV +P + ++D
Sbjct: 131 ITFGEFPAFITGANLIMDYVLSNAAVSRGFTAYLGSAFGISTSEWRFIVSGLPNGFNEID 190
Query: 205 PIAVGVSAVICILAVVSTKGSSRFNYXXXXXXXXXXXXXXXXXXXNADTKNY-------- 256
PIAV V + + ST+ SS+ N D KN
Sbjct: 191 PIAVIVVLAVTFVICYSTRESSKVNMVLTALHIAFIVFVIVMGFSKGDVKNLTRPDNPEN 250
Query: 257 -KAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTXXXXX 315
F PFG GVF +A+++ +YIG+DAVSTMAEE K+P KDIP+G+ GS+A+
Sbjct: 251 PSGFFPFGVSGVFNGAAMVYLSYIGYDAVSTMAEEVKDPVKDIPMGISGSVAIVIVLYCL 310
Query: 316 XXXXXXXMQPYYAINVDAPFSVAF-EAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYL 374
+ PY I+ +AP+S AF ++ GW+W VV GA G+ T L+V+ +GQARY+
Sbjct: 311 MAISMSMLLPYDLIDAEAPYSAAFSKSEGWEWVTRVVGIGASFGILTSLIVAMLGQARYM 370
Query: 375 THIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFML 434
I R+ ++P W A+VH KT TPVNA+ + TA++A FT LNVL NL+SI TLF+F +
Sbjct: 371 CVIGRSRVVPIWFAKVHPKTSTPVNASAFLGIFTAVLALFTDLNVLLNLVSIGTLFVFYM 430
Query: 435 VAVALLVRRYYVSGVTTTANQVKXXXXXXXXXXXXXATAAYWGLSKHG---W-IGYCITV 490
VA A++ RRY G T + W L+ G W I TV
Sbjct: 431 VANAVIFRRYVTVGYTEPWPTLSFLCLFSITSILFTLV---WQLAPSGPPKWFILGASTV 487
Query: 491 PIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARFGVWTVI 550
+ ++ V VPQAR P+ WGVPL+PW P SI +NIFLLGS+D S+ RFG ++ +
Sbjct: 488 TAIAIVQIFHCV-VPQARIPEFWGVPLMPWTPCVSIFLNIFLLGSLDAPSYIRFGFFSGL 546
Query: 551 LLLYYIFFGLHASYDTAKASGEND 574
++L Y+F+ +HASYD A+ G D
Sbjct: 547 VVLVYVFYSVHASYD-AEGDGSLD 569
|
|
| DICTYBASE|DDB_G0279983 ctrB "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 157/506 (31%), Positives = 258/506 (50%)
Query: 70 MKKTLTWWDLXXXXXXXXXXXXXXXLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEF 129
+KK L DL LTG A ++AGPA+V+S++V+G+ LS CY EF
Sbjct: 83 LKKCLNVTDLLAFGVGSIIGAGIFVLTGYAAHEKAGPAIVISYLVAGICCGLSGLCYAEF 142
Query: 130 AVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDF 189
A IP +G +++Y + +G+ +A++ ++ LEY+I A+V R W+ Y ++ N
Sbjct: 143 ASRIPCSGSTYSYSYIMVGELIAWIVGWDLTLEYMIASASVGRGWSGYLGSIINSSGGKL 202
Query: 190 -RIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYXXXXXXXXXXXXXXXXXX 248
I D +D IA ++ ++ + K S+RFN
Sbjct: 203 PHPIAPVYLADGFSVDIIAFLSIMILSLIIAMGMKESARFNKIFVVIKIAIIIFVIVLGS 262
Query: 249 XNADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAV 308
ADT N+ FAP+G +G+F A+A+ FFAY+GFD V +AEE +NP +D+PIG++GS+ +
Sbjct: 263 VYADTSNWDNFAPYGAKGIFNAAAITFFAYLGFDGVCNVAEEVENPQRDLPIGILGSLGI 322
Query: 309 TTXXXXXXXXXXXXMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAV 368
+T + PY+ I+V+AP SVAF+ +G WA +VA GA G+TT L +
Sbjct: 323 STVLYIGTAGVLTLLVPYHLIDVEAPLSVAFDNIGLKWASIIVAIGAFAGLTTAQLGGLI 382
Query: 369 GQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSIST 428
Q R ++R ++P W ++H + TP NAT+ A I+ F +++L++++SI T
Sbjct: 383 SQPRLYYSLSRDGLLPKWFGEIHPRFKTPFNATMFTGVCCATISLFVNIDILADMVSIGT 442
Query: 429 LFIFMLVAVALLVRRY----YVSGVTTTANQVKXXXXXXXXXXXXXATAAYWGLSKHGWI 484
L F LV+ +L+ RY +S T K ++ G++
Sbjct: 443 LLSFTLVSTCVLILRYPKPRTISESTARYPINKFPLFLQSSATLVPIIVVLAAITSLGYV 502
Query: 485 G---YCITVPIWFLGTLYLAV--FVPQAR------APKLWGVPLVPWLPSASIAINIFLL 533
+ + + F G L+ ++ F + + + K + PLVP++P SI N++L+
Sbjct: 503 KSLHWAVILVFGFFGVLFSSIPFFFNETQETILSSSKKTFLCPLVPFIPILSIWANMYLM 562
Query: 534 GSIDRASFARFGVWTVILLLYYIFFG 559
S+ ++ R VW I LL YIF+G
Sbjct: 563 VSLSWGTWVRLVVWLFIGLLIYIFYG 588
|
|
| TIGR_CMR|BA_0818 BA_0818 "amino acid permease family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 125/384 (32%), Positives = 195/384 (50%)
Query: 62 IKARSEHEMKKTLTWWDLXXXXXXXXXXXXXXXLTGQEARQEAGPAVVLSFVVSGLSAML 121
+ S ++++TLT DL LTG A + +GP ++LSF+++ +
Sbjct: 10 LSTESPRQLQRTLTALDLTFLGIGAVIGTGIFVLTGIVAAKHSGPGIMLSFLIAAFTCAC 69
Query: 122 SVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATL 181
FCY EFA IPV+G + Y + +G+ VAF+ ++LEY++ AAVA W+ Y +L
Sbjct: 70 VAFCYAEFASSIPVSGSVYTYAYMTVGEVVAFIVGWCLMLEYLLAVAAVAVGWSGYLQSL 129
Query: 182 CNKQPEDFRIIVHSMPE--DYGQLDPIAVGVSAVICILAVVSTKGSSRFNYXXXXXXXXX 239
I+ S P G +D AV + +I +L + S+R N
Sbjct: 130 LQGFNIHLPAIIASAPGVGKGGLIDLPAVCILLIITVLLSFGIRESARINNIMVLIKLAV 189
Query: 240 XXXXXXXXXXNADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIP 299
+N+ F PFG G+ +A +FFA++GFDA++T AEETK P +D+P
Sbjct: 190 IIAFIVAGAKYVKPENWTPFIPFGYDGIITGAATVFFAFLGFDAIATAAEETKKPQRDLP 249
Query: 300 IGLVGSMAVTTXXXXXXXXXXXXMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGM 359
IG++GS+ + T M PY ++V P + A VG D ++A GA+ GM
Sbjct: 250 IGIIGSLLICTVLYMIVSFVLTGMVPYTQLDVSDPVAFALHFVGEDTIAGLLAVGAMTGM 309
Query: 360 TTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNV 419
TTVLLV GQ R ++R ++P LA+V+ + P+ T + A++A L+V
Sbjct: 310 TTVLLVVMYGQVRVSYAMSRDGLLPKALARVNKRVKIPLLNTWITGVVAALLAGLLDLHV 369
Query: 420 LSNLLSISTLFIFMLVAVALLVRR 443
L+NL++I TL F V A+L+ R
Sbjct: 370 LANLVNIGTLTAFTFVCCAVLILR 393
|
|
| WB|WBGene00016806 C50D2.2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 1.8e-60, Sum P(3) = 1.8e-60
Identities = 123/388 (31%), Positives = 185/388 (47%)
Query: 70 MKKTLTWWDLXXXXXXXXXXXXXXXLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEF 129
+++ L+ +D+ LTG R AGP+++LSF+++G +++LS CY EF
Sbjct: 25 LRRCLSTFDITLLGVGHMIGAGIYVLTGSVVRNTAGPSIILSFLLAGFASLLSALCYAEF 84
Query: 130 AVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDF 189
P AG ++ Y V +G+ AFV NI+LE+++G AAVARSW+ Y +L +
Sbjct: 85 GARFPKAGSAYTYTYVGVGELWAFVIGWNIILEHMLGAAAVARSWSGYLDSLLGNVISNS 144
Query: 190 RII----VHSMPEDYGQL-DPIAVGVSAVICILAVVSTKGSSRFNYXXXXXXXXXX---- 240
I +H +G D +A + ++ + +K S+ FN
Sbjct: 145 TIARTGHLHEASSFFGDYPDLLAFLLIVLVAFFVALGSKVSTNFNSFLTILNIGIVVIVV 204
Query: 241 ----XXXXXXXXXNADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAK 296
D K F P+G G+F +A FFAYIGFD ++T EE K+PA+
Sbjct: 205 FYGITFADFSLWSGVDEKGNSRFFPYGVSGMFAGAASCFFAYIGFDGLATAGEEAKDPAR 264
Query: 297 DIPIGLVGSMAVTTXXXXXXXXXXXXMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGAL 356
IPI SM + T M PY ++ A FS AF G ++A Y V+ GAL
Sbjct: 265 SIPIATFSSMTIVTLSYVLMSASLTLMIPYNMVHPTAAFSDAFTMRGAEFASYAVSVGAL 324
Query: 357 KGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTK 416
GMTT L+ R + +A ++ LA V+ KT P A ++ TAIIA
Sbjct: 325 FGMTTSLVGGMFALPRCVFSMADDGLLFSSLASVNPKTQVPTQALLIFGFLTAIIALLFD 384
Query: 417 LNVLSNLLSISTLFIFMLVAVALLVRRY 444
+ L LSI TL + +V+ ++V RY
Sbjct: 385 ITTLVEFLSIGTLLAYSIVSACVIVLRY 412
|
|
| UNIPROTKB|F1P388 SLC7A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 4.7e-60, Sum P(4) = 4.7e-60
Identities = 74/186 (39%), Positives = 106/186 (56%)
Query: 259 FAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTXXXXXXXX 318
F P+G +GV +A F+A++GFD ++T EE KNP K IPIG+V S+ +
Sbjct: 248 FMPYGLKGVLSGAATCFYAFVGFDCIATTGEEVKNPQKAIPIGIVASLLICFVAYFGVSA 307
Query: 319 XXXXMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIA 378
M PYY ++ ++P AF+ VGWD A Y VA G+L ++T LL S R + +A
Sbjct: 308 ALTLMMPYYQLDTNSPLPNAFKYVGWDGANYAVAVGSLCALSTSLLGSMFPMPRIIYAMA 367
Query: 379 RTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVA 438
++ +LA+V+ K TPV AT+ AI+AF L L +L+SI TL + LVA
Sbjct: 368 EDGLLFKFLAKVNDKRKTPVIATVTSGAVAAIMAFLFDLKDLVDLMSIGTLLAYSLVAAC 427
Query: 439 LLVRRY 444
+LV RY
Sbjct: 428 VLVLRY 433
|
|
| UNIPROTKB|G3MV65 Slc7a1 "Solute carrier family 7 member 1" [Mus musculus musculus (taxid:39442)] | Back alignment and assigned GO terms |
|---|
Score = 358 (131.1 bits), Expect = 6.9e-60, Sum P(3) = 6.9e-60
Identities = 76/199 (38%), Positives = 113/199 (56%)
Query: 250 NADTKNYK----AFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGS 305
N DT N K F PFG GV +A F+A++GFD ++T EE KNP K IP+G+V S
Sbjct: 228 NNDT-NVKYGEGGFMPFGFSGVLSGAATCFYAFVGFDCIATTGEEVKNPQKAIPVGIVAS 286
Query: 306 MAVTTXXXXXXXXXXXXMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLV 365
+ + M PY+ +++D+P AF+ GW+ AKY VA G+L ++T LL
Sbjct: 287 LLICFIAYFGVSAALTLMMPYFCLDIDSPLPGAFKHQGWEEAKYAVAIGSLCALSTSLLG 346
Query: 366 SAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLS 425
S R + +A ++ +LA+++ +T TPV AT+ A++AF +L L +L+S
Sbjct: 347 SMFPMPRVIYAMAEDGLLSKFLAKINNRTKTPVIATVTSGAIAAVMAFLFELKDLVDLMS 406
Query: 426 ISTLFIFMLVAVALLVRRY 444
I TL + LVA +LV RY
Sbjct: 407 IGTLLAYSLVAACVLVLRY 425
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q84MA5 | CAAT1_ARATH | No assigned EC number | 0.7491 | 0.9818 | 1.0 | yes | no |
| P30823 | CTR1_RAT | No assigned EC number | 0.3015 | 0.8314 | 0.8060 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 605 | |||
| TIGR00906 | 557 | TIGR00906, 2A0303, cationic amino acid transport p | 0.0 | |
| TIGR00909 | 429 | TIGR00909, 2A0306, amino acid transporter | 1e-71 | |
| COG0531 | 466 | COG0531, PotE, Amino acid transporters [Amino acid | 8e-52 | |
| pfam13520 | 425 | pfam13520, AA_permease_2, Amino acid permease | 3e-34 | |
| pfam00324 | 473 | pfam00324, AA_permease, Amino acid permease | 8e-28 | |
| TIGR00911 | 501 | TIGR00911, 2A0308, L-type amino acid transporter | 5e-22 | |
| COG0833 | 541 | COG0833, LysP, Amino acid transporters [Amino acid | 2e-21 | |
| TIGR00908 | 442 | TIGR00908, 2A0305, ethanolamine permease | 5e-21 | |
| COG1113 | 462 | COG1113, AnsP, Gamma-aminobutyrate permease and re | 7e-21 | |
| PRK11357 | 445 | PRK11357, frlA, putative fructoselysine transporte | 4e-20 | |
| TIGR00913 | 478 | TIGR00913, 2A0310, amino acid permease (yeast) | 3e-18 | |
| pfam13906 | 51 | pfam13906, AA_permease_C, C-terminus of AA_permeas | 5e-16 | |
| TIGR00905 | 473 | TIGR00905, 2A0302, transporter, basic amino acid/p | 2e-12 | |
| PRK10644 | 445 | PRK10644, PRK10644, arginine:agmatin antiporter; P | 4e-12 | |
| TIGR01773 | 452 | TIGR01773, GABAperm, gamma-aminobutyrate permease | 5e-12 | |
| PRK10249 | 458 | PRK10249, PRK10249, phenylalanine transporter; Pro | 2e-11 | |
| PRK10238 | 456 | PRK10238, PRK10238, aromatic amino acid transporte | 2e-11 | |
| PRK11387 | 471 | PRK11387, PRK11387, S-methylmethionine transporter | 3e-11 | |
| TIGR03428 | 475 | TIGR03428, ureacarb_perm, permease, urea carboxyla | 2e-10 | |
| TIGR04299 | 430 | TIGR04299, antiport_PotE, putrescine-ornithine ant | 8e-08 | |
| PRK10836 | 489 | PRK10836, PRK10836, lysine transporter; Provisiona | 9e-08 | |
| PRK11021 | 410 | PRK11021, PRK11021, putative transporter; Provisio | 1e-07 | |
| TIGR03810 | 468 | TIGR03810, arg_ornith_anti, arginine-ornithine ant | 3e-07 | |
| PRK10580 | 457 | PRK10580, proY, putative proline-specific permease | 1e-06 | |
| TIGR00907 | 482 | TIGR00907, 2A0304, amino acid permease (GABA perme | 2e-06 | |
| PRK15049 | 499 | PRK15049, PRK15049, L-asparagine permease; Provisi | 3e-06 | |
| TIGR00910 | 507 | TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyr | 1e-05 | |
| TIGR03813 | 474 | TIGR03813, put_Glu_GABA_T, putative glutamate/gamm | 4e-05 | |
| PRK10197 | 446 | PRK10197, PRK10197, gamma-aminobutyrate transporte | 6e-05 | |
| PRK15238 | 496 | PRK15238, PRK15238, inner membrane transporter Yje | 2e-04 | |
| PRK10435 | 435 | PRK10435, cadB, lysine/cadaverine antiporter; Prov | 4e-04 | |
| COG0814 | 415 | COG0814, SdaC, Amino acid permeases [Amino acid tr | 5e-04 | |
| TIGR00930 | 953 | TIGR00930, 2a30, K-Cl cotransporter | 0.001 |
| >gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease | Back alignment and domain information |
|---|
Score = 630 bits (1626), Expect = 0.0
Identities = 224/553 (40%), Positives = 313/553 (56%), Gaps = 38/553 (6%)
Query: 50 LTRSLDTTEIHEIKARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVV 109
R L +I ++ +R E +MK+ LT WDL+ GIG+ IGAGI+VLTG+ AR ++GPA+V
Sbjct: 6 FARCLIRRKIVDLDSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIV 65
Query: 110 LSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAA 169
LSF++SGL+A+LS FCY EF +P AG ++ Y V +G+ AF+ N++LEYVIG AA
Sbjct: 66 LSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAA 125
Query: 170 VARSWTSYFATLCNKQPEDFRIIVHSMPEDY--GQLDPIAVGVSAVICILAVVSTKGSSR 227
VARSW++YF L NKQ FR + D D AV + ++ +L K S+
Sbjct: 126 VARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAW 185
Query: 228 FNYIASIIHVIVILFIIIGGFANADTKNYKA--------FAPFGTRGVFKASAVLFFAYI 279
N I + I+++V+LF+II GF AD N+ F P+G GV +A FFA+I
Sbjct: 186 VNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFI 245
Query: 280 GFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAF 339
GFDA++T EE KNP + IPIG+V S+ V +AY L++ AL LM PYY ++ DAPF VAF
Sbjct: 246 GFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAF 305
Query: 340 EAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVN 399
E VGW AKY+VA GAL GM+T LL R + +AR ++ WLAQ++ KT TP+N
Sbjct: 306 EYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPIN 365
Query: 400 ATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTAN----- 454
AT+V A++AF L L +LLSI TL + LVA +L+ RY V A
Sbjct: 366 ATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEK 425
Query: 455 --------------------QVKLIVCILLILISSIATAAYW-GLSKHGW-IGYCITVPI 492
++ + LIL SI T +++ W I +
Sbjct: 426 DTLDSWVPFTSKSESQSEGFSLRTLFSG-LILGLSILTTYGRAAIAEEAWSIALLTLFLV 484
Query: 493 WFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARFGVWTVILL 552
FL + PQ + + VPLVP+LP+ SI INIFL+ +D ++ RF +W I
Sbjct: 485 LFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGF 544
Query: 553 LYYIFFGLHASYD 565
L Y +G+ S +
Sbjct: 545 LIYFLYGIRHSLE 557
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557 |
| >gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 1e-71
Identities = 130/375 (34%), Positives = 202/375 (53%), Gaps = 2/375 (0%)
Query: 70 MKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEF 129
+ + L +DL GIGA+IG GIFV+TG A +AGPAV+LSFV++GL+A+ Y E
Sbjct: 1 LSRELGLFDLTMLGIGAMIGTGIFVVTG-IAAGKAGPAVILSFVLAGLTALFIALVYAEL 59
Query: 130 AVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDF 189
A +PVAG + Y +G+ AF+ ++ LEY + AAVA W Y D
Sbjct: 60 AAMLPVAGSPYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDL 119
Query: 190 RIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFA 249
++ + P + G + A+ + + + + K S + N I ++ V +L G
Sbjct: 120 PAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAI 179
Query: 250 NADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVT 309
+ + NY F P G GV A+A++FFA+IGF+A+ST AEE KNP +DIP ++ S+ V
Sbjct: 180 HFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVV 239
Query: 310 TLAYCLLAIALCLMQPYYAI-NVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAV 368
TL Y L+A + P+ + AP S+ +G ++ GA+ + +V+L
Sbjct: 240 TLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIY 299
Query: 369 GQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSIST 428
G +R L ++R ++P L++VH KTGTP + I+ A++A L L+ L SI T
Sbjct: 300 GTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGT 359
Query: 429 LFIFMLVAVALLVRR 443
L F V VA+++ R
Sbjct: 360 LIAFAAVNVAVIILR 374
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429 |
| >gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 8e-52
Identities = 130/457 (28%), Positives = 217/457 (47%), Gaps = 26/457 (5%)
Query: 63 KARSEHEMKKTLTWWDLIWF-GIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAML 121
+ E+KK L +DL+ G+G++IG+GIF L G A PA +L+++++G+ +
Sbjct: 3 NSMMSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAA--GLAPAAILAWLIAGIIILF 60
Query: 122 SVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATL 181
Y E + IP AGG++AY + LG + F+A LL YVI AA+A SY + L
Sbjct: 61 LALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYL 120
Query: 182 CNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVIL 241
+ + IA+ + A++ +L + K S++ N I +I+ +I++L
Sbjct: 121 FPGPGLLSIGPLLIIL--------IALALIALLTLLNLRGIKASAKINSIITILKIIILL 172
Query: 242 FIIIGGFANADTKNYKAFAPFGTRG-----VFKASAVLFFAYIGFDAVSTMAEETKNPAK 296
II G N FAPF G + A + FFA+ GF+A++T+AEE KNP +
Sbjct: 173 IFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKR 232
Query: 297 DIPIGLVGSMAVTTLAYCLLAIALCLMQPY---YAINVDAPFSVAFEAVGWDWAKYVVAF 353
IP ++ S+ + + Y L A+ + + P A AP ++A G +W ++A
Sbjct: 233 TIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAI 292
Query: 354 GALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAF 413
AL + LL + +R L +AR ++P + A+V+ K TPV A I+ + I+
Sbjct: 293 LALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLL 352
Query: 414 FTKL-----NVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTT--ANQVKLIVCILLIL 466
L N L +L S++ L ++LVA+ALLV R + LI + ++
Sbjct: 353 LFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVA 412
Query: 467 ISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVF 503
+ + A Y +G + + L
Sbjct: 413 VLLLLYALYASGLPPLLLGVILIAGGIIIYLLVYLGL 449
|
Length = 466 |
| >gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 3e-34
Identities = 95/389 (24%), Positives = 176/389 (45%), Gaps = 34/389 (8%)
Query: 74 LTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSV-FCYTEFAVE 132
L+ IG++IG+GIFV + AG A +L ++ L L+V Y E +
Sbjct: 1 LSLLSAFALVIGSIIGSGIFVTPLIAS---AGAAAILWGWIAALIFSLAVALVYAELSSA 57
Query: 133 IPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRII 192
P GG + +L+ G VAF+AA L Y++G A+ + Y + +
Sbjct: 58 FPRNGGIYVWLKNAFGKPVAFIAAWFNWLAYILGLASSSSVAAQYLLSAFFPDLVGNTWL 117
Query: 193 VHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIII------- 245
+ IA+ + + ++ + K S++ I I+ +++ L +II
Sbjct: 118 TYG----------IAIAILIIFALINIRGIKESAKIQNILGIVKLLLPLILIILLGLVLA 167
Query: 246 -GGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVG 304
GG N ++ F P G GVF ++ +++ GF++ + ++EE K +D+P L
Sbjct: 168 LGGGFNLLPNSWTTFFPSGWPGVFLGLLIVLWSFGGFESAANVSEEVKK--RDVPKALFI 225
Query: 305 SMAVTTLAYCLLAIALCLMQPYYAI----NVDAPFSVAFEAVGWDWAKYVVAFGALKGMT 360
+ + + Y L+ I + P I N+ + ++ FEAVG W +V +
Sbjct: 226 GLLIVGVLYLLVNILFLGVVPDDEIAKLSNLPSVAALLFEAVGGPWGAIIVVILLALSLL 285
Query: 361 TVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFT----- 415
+ + V +R L +AR ++P + A+V+ K G+PV A I+ + I+
Sbjct: 286 GAVNTAIVASSRVLEALARDGVLPKFFAKVN-KFGSPVRALILTAILSLILLLLFLLSGA 344
Query: 416 KLNVLSNLLSISTLFIFMLVAVALLVRRY 444
N L +L ++ L +++L+ + LL+ R
Sbjct: 345 AYNALLSLSAVGYLLVYLLLIIGLLILRK 373
|
Length = 425 |
| >gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 8e-28
Identities = 87/399 (21%), Positives = 159/399 (39%), Gaps = 47/399 (11%)
Query: 78 DLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAG 137
++ +G VIG G+FV +G Q +L ++++G+ L++ E + PVAG
Sbjct: 1 HVLMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLIAGVVIFLTMLSLGEMSTNGPVAG 60
Query: 138 GSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMP 197
G +AY LG + F N L ++ A + + F +V +P
Sbjct: 61 GFYAYASRFLGPSLGFATGWNYWLSWIFVIALELTAASILIQ---------FWELVPDIP 111
Query: 198 EDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVI-VILFIIIGGFA------- 249
+ ++ I+ +V KG + ++I VI +I FII+G
Sbjct: 112 YLWV----WGAVFIVLLLIINLVGVKGYGEAEFWFALIKVIAIIGFIIVGFIIPLSGGGP 167
Query: 250 --------NADTKN----YKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKD 297
N N + + F + FFA+ G + V A E KNP K
Sbjct: 168 NDGAYLGYNGGKNNFPPGFASPGTGSFANFFSVFVIAFFAFTGIELVGNAAGEVKNPRKA 227
Query: 298 IPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDA-------PFSVAFEAVGWDWAKYV 350
IP ++ ++ T+ Y L +A+ L+ P+ + A PF + F+++G +
Sbjct: 228 IPKAILQAVWRITIFYILSLLAIGLLVPWNDPGLLADSASAASPFVIFFKSLGISGLAPL 287
Query: 351 VAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAI 410
+ L + S +R L +AR + P +L K+G P+ A ++ + +
Sbjct: 288 INAVILTAALSAANSSLYSGSRVLYALARDGLAPKFLK-KVDKSGVPLRAILLSTAISLL 346
Query: 411 IAFFTKLNV------LSNLLSISTLFIFMLVAVALLVRR 443
LN L + + L ++ L++++ L R
Sbjct: 347 AVLLASLNPAIVFNFLLAISGLIGLIVWGLISLSHLRFR 385
|
Length = 473 |
| >gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 5e-22
Identities = 112/456 (24%), Positives = 200/456 (43%), Gaps = 53/456 (11%)
Query: 69 EMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFV---VSGLSAMLSVFC 125
+KK +T + +G +IG+GIFV + + + AG +V L+ + V G+ +++
Sbjct: 39 ALKKEITLLSGVGIIVGTIIGSGIFV-SPKGVLKNAG-SVGLALIMWAVCGIFSIVGALV 96
Query: 126 YTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAV-ARSWTSYFATLCNK 184
Y E IP +GG + Y+ G +AF+ LL G AV A ++ Y T
Sbjct: 97 YAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFP 156
Query: 185 QPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFII 244
E +PE +L +AV ++ ++ +S K ++R I + ++ +L II
Sbjct: 157 DCE--------VPEWAIRL--VAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLII 206
Query: 245 IGGFANADTKNYKAFAPFGTRGVFKASAVL--------FFAYIGFDAVSTMAEETKNPAK 296
I G+ ++ P + SA +AY G++ ++ + EE KNP +
Sbjct: 207 ITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR 266
Query: 297 DIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGAL 356
+PI ++ SM + T Y L IA Y + +A AV D+ + + G +
Sbjct: 267 TLPIAIIISMPIVTFIYVLTNIA-------YFTVLSPEELLASLAVAVDFGERL--LGVM 317
Query: 357 KGMTTVLL-VSAVG--------QARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTA 407
L+ +S G +R R +P L+ +H K TP+ + +++ T
Sbjct: 318 SWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTL 377
Query: 408 TAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKL-------IV 460
T ++ F + L NL+S + ++F +AVA L+ Y +V L +
Sbjct: 378 TLLMLFSGDIYSLINLISFA-NWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLS 436
Query: 461 CILLILISSIATAAYWGLSKHGWIGYCITVPIWFLG 496
C+ LI++S + G+ G+I VP++F G
Sbjct: 437 CLFLIILSLYSPPVGCGV---GFIIMLTGVPVYFFG 469
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501 |
| >gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 2e-21
Identities = 107/495 (21%), Positives = 179/495 (36%), Gaps = 96/495 (19%)
Query: 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVF 124
E+K++L L IG IG G+FV +G +A +AGPA +++++++ G+ +
Sbjct: 38 QGGELKRSLKSRHLQMIAIGGAIGTGLFVGSG-KALSQAGPAGLLIAYLIIGIMVYFVMQ 96
Query: 125 CYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNK 184
E AV PV+G Y + F N Y W ++ TL +
Sbjct: 97 SLGELAVFYPVSGSFSTYATRFVDPAFGFALGWN----Y----------WLNWAVTLPLE 142
Query: 185 QPEDFRIIVHSMPEDYGQLDPIAVGV-----SAVICILAVVSTKGSSRFNYIASIIHVI- 238
+ S+ Y D + + +I +L + KG + S I V+
Sbjct: 143 ------LTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLT 196
Query: 239 VILFIIIGGFANA---------DTKNYKAFAPFGTRGVFKASAVLF----FAYIGFDAVS 285
+I FII+G + F G FK +F F++ G + V
Sbjct: 197 IIGFIILGIIIICGGGPTHGYIGFNYWHDPGAF--AGGFKGFCSVFVIAAFSFSGTELVG 254
Query: 286 TMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPY--------YAINVDA-PFS 336
A E++NP K IP + L Y L + L+ PY + V A PF
Sbjct: 255 LAAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFV 314
Query: 337 VAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQA--------RYLTHIARTHMMPPWLA 388
+A + G + M V+L S + A R L +A+ P A
Sbjct: 315 IAIKNAGI---PVAASI-----MNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFA 366
Query: 389 QVHGKTGTPVNATIVMLTATAIIAFFTKL-------NVLSNLLSISTLFIFMLVAVALLV 441
+V + G P+ A +V L ++AF N L N+ +S + + ++ +
Sbjct: 367 KVD-RRGVPLVALLVTL-LFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIR 424
Query: 442 --RRYYVSG--------VTTTANQVKLIVCILLILISSIATAAYWGLSKHGW-----IGY 486
R G + + IL ILI + Y G+
Sbjct: 425 FRRAMKAQGRSLDELPYKSPFGPYGPIYGLILCILI--LIGQGYVAFFPIGFSAGDFFAA 482
Query: 487 CITVPIWFLGTLYLA 501
+ +PI+ +Y+
Sbjct: 483 YLGLPIFIA--IYIG 495
|
Length = 541 |
| >gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 5e-21
Identities = 89/392 (22%), Positives = 156/392 (39%), Gaps = 39/392 (9%)
Query: 69 EMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFC--Y 126
++KKTL W L G+G VI A+ G VV + +V+ M FC
Sbjct: 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVA---TMYLTFCFSL 60
Query: 127 TEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQP 186
E + IP AGG + + R G + F+A IL+E+ A+A +Y C
Sbjct: 61 AELSTMIPTAGGGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAY----CESL- 115
Query: 187 EDFRIIVHSMPEDYGQLDP--IAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFII 244
+ A+ V + ++ +++ ++ + + +I + I
Sbjct: 116 -------------FPVGPGWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIALGVFI 162
Query: 245 IGGFANADTKNY--------KAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAK 296
+ D+ N +F P GVF A + ++ + V+ AEETKNP +
Sbjct: 163 GAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR 222
Query: 297 DIPIGLVGSMAV-TTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAV--GWDWAKYVVAF 353
DIP GL+G++ LA +L + + + P A E++ G W V
Sbjct: 223 DIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNL 282
Query: 354 GALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIV--MLTATAII 411
L G+ G +R + ++R +P L++V+ K PV A +V ++ +
Sbjct: 283 VGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVNRK-KAPVLAIVVPGVIGFGLSL 341
Query: 412 AFFTKLNVLSNLLSISTLFIFMLVAVALLVRR 443
T L +L ++ ++ + A L R
Sbjct: 342 TGQTALIILVSVFGAIISYVLSMAAHFTLRIR 373
|
The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily [Transport and binding proteins, Amino acids, peptides and amines]. Length = 442 |
| >gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 7e-21
Identities = 113/539 (20%), Positives = 187/539 (34%), Gaps = 114/539 (21%)
Query: 65 RSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVF 124
E +K+ L + IG IG G+F+ +G A AGP+V+L+++++G+ L +
Sbjct: 6 NEEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGS-AIAMAGPSVLLAYLIAGIFVFLIMR 64
Query: 125 CYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGA----AVARSWTSYFAT 180
E V PV+G Y R LG + F+ +V+ G A+ +F
Sbjct: 65 ALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD 124
Query: 181 LCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVI 240
+ A+ ++ + ++S K + ++I V I
Sbjct: 125 VPQWVF--------------------ALAAVVLLLAVNLISVKVFGELEFWFALIKVAAI 164
Query: 241 -------LFIIIGGFANAD-------TKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVST 286
+ ++ GGF ++ F P G G A ++ FA+ G + V
Sbjct: 165 IAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGI 224
Query: 287 MAEETKNPAKDIP-----------IGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDA-P 334
A E K+P K IP I VGS+ V Y P+ I D P
Sbjct: 225 TAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLY-----------PWNQIGEDGSP 273
Query: 335 FSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKT 394
F F +G +A ++ F L + L +R L +A+ P A++ K
Sbjct: 274 FVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLS-KR 332
Query: 395 GTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTAN 454
G PVNA ++ A L V+ N + +F + + L
Sbjct: 333 GVPVNAILLS-------AVVLLLGVVLNYILPEKVFELVTSSSGLG-------------- 371
Query: 455 QVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWG 514
L+ L+IL+S L K + K+
Sbjct: 372 ---LLFVWLMILLS------QLKLRK-------------------AKPAEGKKLKFKMPL 403
Query: 515 VPLVPWLPSASIAINIFLLGSID--RASFARFGVWTVILLLYYIFFGLHASYDTAKASG 571
P +L A +A + L+ R S VW V+L + Y+ + KA
Sbjct: 404 YPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKKARKARKAPK 462
|
Length = 462 |
| >gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 4e-20
Identities = 92/384 (23%), Positives = 162/384 (42%), Gaps = 44/384 (11%)
Query: 65 RSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAV-VLSFVVSGLSAMLSV 123
E+++ L +W ++ +G +G+GIFV G+ A+ P + VL+FV+ GL + +
Sbjct: 1 MGSQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQM 60
Query: 124 FCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCN 183
Y E + P G + YL+ +AF++ W S++A
Sbjct: 61 CVYAELSTAYPENGADYVYLKNAGSRPLAFLSG-----------------WASFWAN--- 100
Query: 184 KQPEDFRIIVHSMPEDYGQLDP--------IAVGVSAVICILAVVSTKGSSRFNYIASII 235
I+ ++ + G L P IA G+ +L + S +G + F + +I
Sbjct: 101 -DAPSLSIMALAIVSNLGFLTPIDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIA 159
Query: 236 HVIVILFIIIGGFANADTKNYKAFAPFGTRGVFKASAVLF------FAYIGFDAVSTMAE 289
+I +I G +N+ A A+L ++Y G ++ M
Sbjct: 160 KIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTG 219
Query: 290 ETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAI-NVDAPFSVAFE---AVGWD 345
E KNP K +P L+GS + + Y LLA+ + + P+ + N + P S A A+G
Sbjct: 220 EIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALG-S 278
Query: 346 WAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVML 405
A VA A+ + L + Q R +A+ ++ VH K TP + ++
Sbjct: 279 TAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPD---VSII 335
Query: 406 TATAIIAFFTKLNVLSNLLSISTL 429
A+ FF ++ L++LL TL
Sbjct: 336 LQGALGIFFIFVSDLTSLLGYFTL 359
|
Length = 445 |
| >gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-18
Identities = 97/482 (20%), Positives = 163/482 (33%), Gaps = 84/482 (17%)
Query: 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEF 129
KK+L + +G IG G+ V +G A GPA +++ + + G + E
Sbjct: 1 KKSLKQRHIQMIALGGTIGTGLLVGSGT-ALATGGPAGLLIGYAIMGSIIYCVMQSLGEM 59
Query: 130 AVEIPVAGGSFA-YLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPED 188
A PV GSFA Y + F N L+++I + + +K
Sbjct: 60 ATFYPVVSGSFATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPA 119
Query: 189 FRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVIL------F 242
I + I I+ + KG + S I ++ I+
Sbjct: 120 VWIAI----------------FYVFIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSI 163
Query: 243 IIIGGFANADT-------KNYKAFAPFGTRGVFKASAVLF----FAYIGFDAVSTMAEET 291
I+ G + AFA G FK +F F++ G + V+ A E
Sbjct: 164 ILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA 223
Query: 292 KNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPY-------YAINVDA---PFSVAFEA 341
NP K IP + + Y L + + PY + + D+ PF +A +
Sbjct: 224 ANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQN 283
Query: 342 VGWDWAKYVVAFGALKGMTTVLLVSAVGQA--------RYLTHIARTHMMPPWLAQVHGK 393
G K + V+L+S + A R L +A + P A V +
Sbjct: 284 HGI---KVLPHI-----FNAVILISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVD-R 334
Query: 394 TGTPVNATIVMLTATAIIAFFTK-------LNVLSNLLSISTLFIFMLVAVALLVRRY-- 444
G P A IV ++AF L N+ +S F +M + ++ + R
Sbjct: 335 RGVPYVAVIVSS-LFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAM 393
Query: 445 -----------YVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIW 493
Y S + L IL+++ A S + +++PI+
Sbjct: 394 KAQGRSLDELPYKSQTGPYGSYYALFFNILILIAQGYVAFAPVKFSAKSFFEAYLSLPIF 453
Query: 494 FL 495
Sbjct: 454 IA 455
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 478 |
| >gnl|CDD|206077 pfam13906, AA_permease_C, C-terminus of AA_permease | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 5e-16
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 513 WGVPLVPWLPSASIAINIFLLGSIDRASFARFGVWTVILLLYYIFFGLHAS 563
+ VPLVP+LP+ SI INI+L+ +D ++ RF VW +I LL Y +G+ S
Sbjct: 1 FKVPLVPFLPALSILINIYLMVQLDALTWIRFAVWLLIGLLIYFGYGIRHS 51
|
This is the C-terminus of AA-permease enzymes that is not captured by the models pfam00324 and pfam13520. Length = 51 |
| >gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-12
Identities = 87/379 (22%), Positives = 150/379 (39%), Gaps = 38/379 (10%)
Query: 84 IGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIP-VAGGSFAY 142
IG++IG+GIF L A AV++ ++++G+ + F + A + P + GG +AY
Sbjct: 19 IGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAY 78
Query: 143 LRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQ 202
R G ++ F++ L IG A A S F + G
Sbjct: 79 AREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYF-------FPLFGS------GN 125
Query: 203 LDPIAVGVSAVICILAVVSTKG---SSRFNYIASIIHVI-VILFIIIGGF--------AN 250
P +G S ++ + + +G ++ N I +I +I + LFIIIG F A+
Sbjct: 126 PVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTAD 185
Query: 251 ADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTT 310
+ + ++ V V + +IG + + KN D+ V
Sbjct: 186 FWGHDVPSLGSVFSQ-VKNTMLVTLWVFIGIEGAVVSSGRAKNK-SDVGKATVLGTLGAL 243
Query: 311 LAYCL--LAIALCLMQPYYAINVDAPFSVAF-EAVGWDWAKYVVAFGALKGMTTVLLVSA 367
+ Y L L L Q A N+ P A E + W +++ G + + LL
Sbjct: 244 VIYILITLLSLGVLPQQELA-NLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWT 302
Query: 368 VGQARYLTHIARTHMMPPWLAQVHGKTGTPVNA---TIVMLTATAIIAFFTK--LNVLSN 422
+ A A+ + P +V+ K G P A T +++ ++ T NVL +
Sbjct: 303 MLAAEVPFSAAKDGLFPKIFGRVN-KNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVS 361
Query: 423 LLSISTLFIFMLVAVALLV 441
L + L ++L A LL
Sbjct: 362 LAVVMILVPYLLSAAYLLK 380
|
This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions [Transport and binding proteins, Amino acids, peptides and amines]. Length = 473 |
| >gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 4e-12
Identities = 93/381 (24%), Positives = 164/381 (43%), Gaps = 51/381 (13%)
Query: 85 GAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLR 144
G ++G+G+F+L A G + ++V+ + A+ Y + + P GGS+AY R
Sbjct: 21 GNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYAR 78
Query: 145 VELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLD 204
G F+ + L IG A+ Y + F I+ D
Sbjct: 79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYF-------FPILK----------D 121
Query: 205 PIAVGVSAVICI-----LAVVSTKGSSRFNYIASIIHVIVILFIIIGGFANADTKNYKAF 259
P+ + ++ V+ + L +V K +R +A+++ +I I+ I + G+ + Y A
Sbjct: 122 PLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAA 181
Query: 260 APFGTRGVFKA----SAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCL 315
G F A V +++IG ++ S A KNP +++PI +G + + + Y L
Sbjct: 182 WNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVL 241
Query: 316 LAIALCLMQPYYAINV-DAPFSVAFEAVGWDWAKYVVAF-------GALKGMTTVLLVSA 367
+ A+ M P A+ V +PF A D A +V+F G+L G T LL
Sbjct: 242 SSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWT--LLAGQ 299
Query: 368 VGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFT-------KLNVL 420
+A A + PP A+V+ K GTPV +++ I + + ++
Sbjct: 300 TAKA-----AADDGLFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLV 353
Query: 421 SNLLSISTLFIFMLVAVALLV 441
S++ I TL ++ ALL+
Sbjct: 354 SSVSVIFTLVPYLYTCAALLL 374
|
Length = 445 |
| >gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 5e-12
Identities = 99/408 (24%), Positives = 168/408 (41%), Gaps = 65/408 (15%)
Query: 63 KARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLS 122
+++S ++ L + I VIGAG+FV +G A AGPA +L+++++GL +
Sbjct: 3 QSQSGLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGS-AIASAGPAALLAYLLAGLLVVFI 61
Query: 123 VFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAG--------NILLEYVIGGAAVARSW 174
+ E AV P G Y +G + F I LE I A + + W
Sbjct: 62 MRMLGEMAVANPDTGSFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLE-AIAAAGILQYW 120
Query: 175 TSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASI 234
+P L ++ ++ V+ + + S K F + ++
Sbjct: 121 ------------------FPDIP-----LWLFSLILTIVLTLTNLYSVKSYGEFEFWFAL 157
Query: 235 IHVIVIL-FIIIG--------------GFANADTKNYKAFAPFGTRGVFKASAVLFFAYI 279
I VI I+ FII+G GF+N K F P G V A V F+++
Sbjct: 158 IKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKG--GFFPNGIGAVLLAILVTMFSFM 215
Query: 280 GFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAY-CLLAIALCLMQPYYAINVDA--PFS 336
G + V+ A E+ NP K I + + Y + I + L+ P+ + N+ +
Sbjct: 216 GTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALL-PWNSPNLLEVGSYV 274
Query: 337 VAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGT 396
E +G AK ++ F L + + L + +R L +A P +++ K G
Sbjct: 275 AVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAPRVFMKLN-KKGV 333
Query: 397 PVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLV---AVALLV 441
PV A + FF+ L V+ N + +F+F++ A+ALLV
Sbjct: 334 PVQAVLAS-------TFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLV 374
|
GABA permease (gabP) catalyzes the translocation of 4-aminobutyrate (GABA) across the plasma membrane, with homologues expressed in Gram-negative and Gram-positive organisms. This permease is a highly hydrophobic transmembrane protein consisting of 12 transmembrane domains with hydrophilic N- and C-terminal ends. Induced by nitrogen-limited culture conditions in both Escherichia coli and Bacillus subtilis, gabP is an energy dependent transport system stimulated by membrane potential and has been observed adjacent and distant from other GABA degradation proteins. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 452 |
| >gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 2e-11
Identities = 93/396 (23%), Positives = 168/396 (42%), Gaps = 31/396 (7%)
Query: 56 TTEIHEIKARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVS 115
+T + + E + + L + +G IG G+F+ G A Q AGPAV+L + V+
Sbjct: 5 STVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIG-PAIQMAGPAVLLGYGVA 63
Query: 116 GLSAMLSVFCYTEFAVEIPVAGGSFAYLRVEL-GDFVAFVAAGNILLEYVIGGAAVARSW 174
G+ A L + E VE PV+ GSFA+ + G F F++ N + +V+ G A +
Sbjct: 64 GIIAFLIMRQLGEMVVEEPVS-GSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAA 122
Query: 175 TSYFATLCNKQPE-----DFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFN 229
Y P F II++++ +L A+I +LA++ G +
Sbjct: 123 GIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLW- 181
Query: 230 YIASIIHVIVILFIIIGGFANADTKN---YKAFAPFGTRGVFKASAVLFFAYIGFDAVST 286
+LF GG A N Y F G G+ + AV+ F++ G + +
Sbjct: 182 ----------LLFSGHGG-EKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGI 230
Query: 287 MAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVD-APFSVAFEAVGWD 345
A E ++P K IP + + L Y + L + P+ + + +PF + F + +
Sbjct: 231 TAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSN 290
Query: 346 WAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVML 405
+ F L +V +R L ++ P +L +V + G P+N+ ++
Sbjct: 291 VVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRV-SRRGVPINSLMLSG 349
Query: 406 TATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLV 441
T+++ +++ LL + M + VA L+
Sbjct: 350 AITSLVV------LINYLLPQKAFGLLMALVVATLL 379
|
Length = 458 |
| >gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 2e-11
Identities = 103/378 (27%), Positives = 150/378 (39%), Gaps = 51/378 (13%)
Query: 84 IGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYL 143
+G IG G+F L Q AGP ++L + ++G A L + E VE PVAG +
Sbjct: 24 LGGAIGTGLF-LGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFA 82
Query: 144 RVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQL 203
G F F + N + YV+ A + Y I PE
Sbjct: 83 YKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKY--------------IQFWYPE----- 123
Query: 204 DPIAVGVSA-----VICILAVVSTKGSSRFNYIASIIHVI-VILFIIIGGF--------A 249
I VSA VI + + + K + +II VI V+ II GG+
Sbjct: 124 --IPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGP 181
Query: 250 NADTKN---YKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSM 306
A N F P G G+ A++ F++ G + V A E NP + IP +
Sbjct: 182 QATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVI 241
Query: 307 AVTTLAYC-LLAIALCLMQPYYAINVD-APFSVAFEAVGWDWAKYVVAFGALKGMTTVLL 364
+ Y LA+ L LM P+ + D +PF + F +G + + L +V
Sbjct: 242 YRILIFYIGSLAVLLSLM-PWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYN 300
Query: 365 VSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLL 424
+R L +A+ P LA V K G PVN +V A T L VL N L
Sbjct: 301 SCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVS-------ALVTALCVLINYL 352
Query: 425 SISTLF-IFMLVAVALLV 441
+ + F + M + V+ LV
Sbjct: 353 APESAFGLLMALVVSALV 370
|
Length = 456 |
| >gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 95/397 (23%), Positives = 166/397 (41%), Gaps = 37/397 (9%)
Query: 61 EIKARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAM 120
E ++ + K+T+ L+ +G VIG G+F TG +L++++ L
Sbjct: 3 EPTSQQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVY 62
Query: 121 LSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFAT 180
L + C E +V +P G Y LG + A L + + A+ S T+ A
Sbjct: 63 LVMQCLGELSVAMPETGAFHVYAARYLGPATGYTVAWLYWLTWTV---ALGSSLTA--AG 117
Query: 181 LCNKQPEDFRIIVHSMPEDYGQLD--PIAVGVSAVICILAVVSTKGSSRFNYIASIIHVI 238
C M + Q+ P + A+I L VVST+ + + S+I V+
Sbjct: 118 FC-------------MQYWFPQVPVWPWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKVV 164
Query: 239 VIL-FIIIGGFA------------NADTKNYKA--FAPFGTRGVFKASAVLFFAYIGFDA 283
IL FI++GG A +N A + P G + + FA+ G +
Sbjct: 165 TILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTEL 224
Query: 284 VSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVD-APFSVAFEAV 342
+ A ET+NPAK IP+ + ++A + + + L + P V+ +PF + FE V
Sbjct: 225 IGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKV 284
Query: 343 GWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATI 402
G +A + F L + + R L ++ +P A++ K G P+ A
Sbjct: 285 GIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLT-KRGIPLTALS 343
Query: 403 VMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVAL 439
V + + F + + + +++S + F +VAV L
Sbjct: 344 VSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWL 380
|
Length = 471 |
| >gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 82/366 (22%), Positives = 156/366 (42%), Gaps = 34/366 (9%)
Query: 104 AGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEY 163
GPA ++ V + +L + E A P++G + + R G+ + + A +++
Sbjct: 45 GGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEVIGWFAGWFMIIAQ 104
Query: 164 VIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPI----AVGVSAVICILA- 218
++ AA A + + + F+II ED P AV + +V+ +L
Sbjct: 105 IVTAAAAAIALQVVLPNIWS----GFQII----GEDPTLTSPSGAANAVLLGSVLLVLTT 156
Query: 219 ---VVSTKGSSRFNYIASIIHVIVILFIIIGGFANADTKNYKAF------APFGTRGVFK 269
+ + SR N I ++ +L +I F +A F A G G F
Sbjct: 157 VINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFL 216
Query: 270 ASAVL-FFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYA 328
S ++ + +GF + ++EETKNP + P ++ +++V+ L L+ + + P
Sbjct: 217 VSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLT 276
Query: 329 ---INVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMP- 384
+ + V + W ++ A+ + L + G +R + +AR +P
Sbjct: 277 DGRLAAEGLPYVLSAVLDSPWGTVLLVDVAIAILVCTLAIQTAG-SRLMFSMARDGKLPA 335
Query: 385 -PWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLN--VLSNLLSISTLFI---FMLVAVA 438
L++VH +TGTP+ +IV+ I N + + L S+ + I ++LV V
Sbjct: 336 SAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVP 395
Query: 439 LLVRRY 444
LL+RR
Sbjct: 396 LLLRRL 401
|
A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon. Length = 475 |
| >gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 8e-08
Identities = 91/435 (20%), Positives = 173/435 (39%), Gaps = 56/435 (12%)
Query: 87 VIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVE 146
++G+GI +L A + G ++S++V+ + AM + + + +GG Y
Sbjct: 19 MMGSGIIMLPTNLA--QVGTMSIISWLVTAVGAMALAWAFARAGMYSSKSGGMGGYAEYS 76
Query: 147 LGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPI 206
G F+A + VI AA+A S Y A L H L P+
Sbjct: 77 FGKAGNFMANYTYGVSLVIANAAIAISAVGYGAELLG---------AH--------LSPV 119
Query: 207 AVGVSAVICI-LAVVSTKGSSRFNYIASIIHV----IVILFIIIGGFANADTKNYKA--- 258
+ ++ + + +A V G +R S V I ++ I I G+ Y
Sbjct: 120 QIALATIGVLWIATVLNFGGARITGQISSFTVWGVIIPVVGISIIGWFWFSGTLYADSWN 179
Query: 259 --FAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLL 316
A F GV + ++ +A++G ++ + +NP K++PI ++G + Y +
Sbjct: 180 PHHAGF-FSGVGSSISITLWAFLGLESACANTDVVENPKKNVPIAVLGGTIGAAVMYIIS 238
Query: 317 AIALCLMQPYYAI-NVDAPFSVAF-EAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYL 374
+ + P + N +APF +AF + K V+ M S +G +
Sbjct: 239 TNVIAGIVPNMELANSNAPFGLAFSQMFNPTVGKIVMGL-----MVISCFGSLLGWQFTI 293
Query: 375 THIARTHMMPPWLAQVHGKT---GTPVNATIVMLTATAIIAFFT-------KLNVLSNLL 424
+ R+ + ++ KT GTP+ +++ +++A T + +L NL
Sbjct: 294 AEVFRSSADEGYFPKIFSKTIGNGTPLIGMLIITILQSLLALMTISPSLSKQFTILVNLA 353
Query: 425 SISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCI------LLILISSIATAAYWG- 477
++ + ++L ++A L V+ V +V + L L SS A +G
Sbjct: 354 VVTNIIPYIL-SMAALKTMQKVANVPPKGAKVTNFIAFVAALYSLYALYSSGEEAMLYGS 412
Query: 478 -LSKHGWIGYCITVP 491
++ GW Y + P
Sbjct: 413 IVTFAGWTLYGLVSP 427
|
Members of this protein family are putrescine-ornithine antiporter. They work together with an enzyme that decarboxylates ornithine to putrescine. This two-gene system has the net effect of removing a protein from the cytosol, providing transient resistance to acid conditions. Length = 430 |
| >gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 9e-08
Identities = 101/402 (25%), Positives = 165/402 (41%), Gaps = 56/402 (13%)
Query: 60 HEIKARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLS 118
E K +++ L L IG IG G+FV +G Q AGP +LS+++ GL
Sbjct: 3 SETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQ-AGPGGALLSYMLIGLM 61
Query: 119 AMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYF 178
+ E A +PV+G +F G +E G A W ++
Sbjct: 62 VYFLMTSLGELAAYMPVSG--------------SFATYGQNYVEEGFGFALGWNYWYNWA 107
Query: 179 ATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVI 238
T+ ++ P+ G + + VI +L +S +G Y S+I V
Sbjct: 108 VTIAVDLVAAQLVMSWWFPDTPGWI--WSALFLGVIFLLNYISVRGFGEAEYWFSLIKVT 165
Query: 239 -VILFIIIG---------GFANADTKNYK-AFAPF--GTRGVFKASAVLFFAYIGFDAVS 285
VI+FII+G G A N+ APF G + + ++ F++ G + +
Sbjct: 166 TVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIG 225
Query: 286 TMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYA----------INVDAPF 335
A E+++PAK+IP + L Y + + L+ PY I+V +PF
Sbjct: 226 IAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISV-SPF 284
Query: 336 SVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVG---QARYLTHIARTHMMPPWLAQVHG 392
++ F+ G A V+ L T VL G R L +A P A++
Sbjct: 285 TLVFQHAGLLSAAAVMNAVIL---TAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKL-S 340
Query: 393 KTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFML 434
+ G P NA L AT +IA L L+++ T+++++L
Sbjct: 341 RGGVPRNA----LYATTVIA---GLCFLTSMFGNQTVYLWLL 375
|
Length = 489 |
| >gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 61/244 (25%), Positives = 102/244 (41%), Gaps = 19/244 (7%)
Query: 231 IASIIHVIVILFIIIGGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEE 290
IA +I +V+ G AD + A G+F A V+F+ ++G +A + +A E
Sbjct: 144 IALLIVALVVAIWWAGDIKPADIP-FPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASE 202
Query: 291 TKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVA-FEAVGWDWAKY 349
KNP +D P L+ + + L Y + + Y A F + +A +
Sbjct: 203 FKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALW 262
Query: 350 VVA-FGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTAT 408
V+ G L +V + + AR + AR P +LA++ + G PVNA +L
Sbjct: 263 VICVIGYLACFASVNIYTQ-SFARLVWSQAREGRPPSYLARLSAR-GVPVNALNAVLGCC 320
Query: 409 A---IIAFFTKLN-----VLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIV 460
A ++ + LN +N + + + ML A LL RY V ++
Sbjct: 321 AVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKGRYRPLAVLG------CLL 374
Query: 461 CILL 464
C+LL
Sbjct: 375 CLLL 378
|
Length = 410 |
| >gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 95/395 (24%), Positives = 168/395 (42%), Gaps = 50/395 (12%)
Query: 84 IGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIP-VAGGSFAY 142
+G++IG+GIF L A A AV++ +V++G+ + F + A + P + GG ++Y
Sbjct: 13 VGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSY 72
Query: 143 LRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQ 202
+ G F+ F++A L +G A +ATL F + + P G
Sbjct: 73 AKAGFGPFMGFISAWGYWLSAWLGNVA--------YATLL------FSTLGYFFPIFGGG 118
Query: 203 LDPIAVGVSAVI--CILAVV--STKGSSRFNYIASIIHVI-VILFIIIGGFA-NADT--- 253
+P ++ ++V+ C+ +V +G++ N I +I ++ + +FI+IG FA DT
Sbjct: 119 NNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTN 178
Query: 254 ---KNYKAFAPFGTRG--VFKASAVLFFAYIGFDAVSTM---AEETKNPAKDIPIGLVGS 305
N G+ V V + +IG + S + AE+ + K IGL+G
Sbjct: 179 DFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVIGLIGV 238
Query: 306 MAVTTLAYCLLAIALCLM-QPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLL 364
+A+ L L + +M Q A + + E + W ++ G + + L
Sbjct: 239 LAIYVLVSVL---SYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWL 295
Query: 365 VSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLL 424
+ A +A+ +MP + + + G P NA + +I F +L+ L
Sbjct: 296 SWTLLPAEIPLLMAKDKLMPKYFGKENAN-GAPTNALWLT---NGLIQIF----LLTTLF 347
Query: 425 SIST-LFIFMLVAVALLVRRYYVSGVTTTANQVKL 458
S F L A+LV + A QVKL
Sbjct: 348 SEQAYNFAISLATSAILVPYLWS-----AAYQVKL 377
|
Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2 [Transport and binding proteins, Amino acids, peptides and amines]. Length = 468 |
| >gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 86/391 (21%), Positives = 166/391 (42%), Gaps = 33/391 (8%)
Query: 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFC 125
S++++K+ L+ + + +G+ IG G+F + +A + AGP+V+L++++ G++A + +
Sbjct: 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSA-DAIKMAGPSVLLAYIIGGVAAYIIMRA 61
Query: 126 YTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQ 185
E +V P A Y + LG ++ E +I A ++ Y
Sbjct: 62 LGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVW---- 117
Query: 186 PEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTK--GSSRFNY----IASIIHVIV 239
F + H + + V +IC + ++S K G F + +A+II +IV
Sbjct: 118 ---FPTVPHWI---------WVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIV 165
Query: 240 ILF-IIIGGFANA-------DTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEET 291
III G N + + F G G+ + ++ FAY G + + A E
Sbjct: 166 AGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA 225
Query: 292 KNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVD-APFSVAFEAVGWDWAKYV 350
K+P K IP + + Y + + P+ + + +PF + F+ +G +A +
Sbjct: 226 KDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASI 285
Query: 351 VAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAI 410
+ F L + + G R L +A P ++ + G P +VM TA
Sbjct: 286 LNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKT-SRRGIPWVTVLVMTTALLF 344
Query: 411 IAFFTKLNVLSNLLSISTLFIFMLVAVALLV 441
+ + + L I++L F V V +++
Sbjct: 345 AVYLNYIMPENVFLVIASLATFATVWVWIMI 375
|
Length = 457 |
| >gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 67/381 (17%), Positives = 137/381 (35%), Gaps = 51/381 (13%)
Query: 67 EHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAG--PAVVLSFVVSGLSAMLSVF 124
+ E+K+ + W + F + + + T +G ++V ++++G ++
Sbjct: 7 KPELKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIAL 65
Query: 125 CYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNK 184
E + P +GG + + A+ ++ G +A +T +
Sbjct: 66 SLAELSSAYPTSGGQYFWSAKLAPPRQMPFAS------WMTGWFNLAGQVAGTASTDLSV 119
Query: 185 QPEDFRIIVHSMPE-DYGQLDPIAVGV-SAVICILAVVSTKGSSRFNYIAS---IIHVIV 239
I+ + P +Y G+ + I A++++ + I S ++
Sbjct: 120 AQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKWLPRITSSAAYWSLLG 179
Query: 240 ILFIIIGGFANADTKNYKA---FAPF-GTRGVFKASAVLF--------FAYIGFDAVSTM 287
L I I A K F F + G +K F ++ G+D + M
Sbjct: 180 FLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHM 239
Query: 288 AEETKNPAKDIPIGLVGSMAVT-TLAYC-LLAIALCLMQPYYAINVDAPFSVAFEAVGWD 345
AEE +NP P ++G++A+ +C + + + I+ +A
Sbjct: 240 AEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIA------- 292
Query: 346 WAKYVVAFGALKGMTTVLLVSAV-----------GQARYLTHIARTHMMP--PWLAQVHG 392
+ A G G +L + V +R + +R +P P ++V+
Sbjct: 293 -QIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNP 351
Query: 393 KTGTPVNATIVMLTATAIIAF 413
+T P+NA V L+A II
Sbjct: 352 RTQVPLNA--VWLSAVWIILI 370
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 482 |
| >gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 85/408 (20%), Positives = 155/408 (37%), Gaps = 48/408 (11%)
Query: 51 TRSLDTTEIHEIKAR----SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEAR-QEAG 105
DT++ H K R E K + + IG IG G+F+ G AR Q AG
Sbjct: 3 KHDTDTSDQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAIGTGLFL--GAGARLQMAG 60
Query: 106 PAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVI 165
PA+ L +++ GL + + E + P +G +Y R LG+ A+VA + + +
Sbjct: 61 PALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFINWAM 120
Query: 166 GG----AAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVS 221
G AVA + Y+ F A+ ++ + ++
Sbjct: 121 TGIVDITAVAL-YMHYWGAFGGVPQWVF-----------------ALAALTIVGTMNMIG 162
Query: 222 TKGSSRFNYIASIIHVI-VILFIIIG----GFANADTKNYKAFAPFGTRGVFKASAVL-- 274
K + + ++I V+ ++ F+++G G N F G F +L
Sbjct: 163 VKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPA 222
Query: 275 -------FFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYY 327
FA+ + V T A E K+P +P + + L Y + L ++ P+
Sbjct: 223 LVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWS 282
Query: 328 AINV-DAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPW 386
A +PF F +G + ++ L + L R L +A P +
Sbjct: 283 AYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSF 342
Query: 387 LAQVHGKTGTP---VNATIVMLTATAIIAFFTKLNVLSNLLSISTLFI 431
+A++ + P + AT+V+ + + V +L+ ++L I
Sbjct: 343 MAKM-SRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGI 389
|
Length = 499 |
| >gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 69/270 (25%), Positives = 113/270 (41%), Gaps = 31/270 (11%)
Query: 204 DPIAVGVSAVICILAVV-----STKGSSRF---NYIASIIHVIVILF-----IIIGGFAN 250
DPI ++A+I A+ TK +++ + A I+ ILF GG
Sbjct: 119 DPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPI 178
Query: 251 ADTKNYKAFAP-FGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVT 309
A + AF P F G AY+G +A ++ E +NP +D P+ ++ M
Sbjct: 179 AIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLM--- 235
Query: 310 TLAYCLLAI---ALCLMQPYYAINVDAPFSVAFEAV------GWDWAKYVVAFGALKGMT 360
A CL AI ++ + P IN+ A F+ + +W V+A G+
Sbjct: 236 IAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVL 295
Query: 361 TVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTAT----AIIAFFTK 416
+ VG +R + A+ ++P A+++ K PV I+ T AI+ F
Sbjct: 296 AEIASWIVGPSRGMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGG 354
Query: 417 LNVLSNLLSISTLFIFMLVAVALLVRRYYV 446
N LS L++I+ + L A L Y+V
Sbjct: 355 GNNLSFLIAIALTVVIYLCAYFLFFIGYFV 384
|
Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 [Transport and binding proteins, Amino acids, peptides and amines]. Length = 507 |
| >gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 13/225 (5%)
Query: 232 ASIIHVIVILFIIIGGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEET 291
A+I+ ++ I +++ GG + + AF F +A +F Y G + + ++
Sbjct: 161 AAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAASIFLFYAGMEMNAVHVKDV 220
Query: 292 KNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVA----FEAVGWDWA 347
NP K+ PI ++ + T L + L +A+ + P I++ VA F G W
Sbjct: 221 DNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWL 280
Query: 348 KYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTA 407
++AF G+ ++ G + + +A+ +P + Q K G P++ V A
Sbjct: 281 GPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFF-QKTNKNGMPIHIMFVQGIA 339
Query: 408 TAIIAFF--------TKLNVLSNLLSISTLFIFMLVAVALLVRRY 444
++++ +LS L I L +++L+ + + RY
Sbjct: 340 VSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRY 384
|
Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain. Length = 474 |
| >gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 6e-05
Identities = 82/386 (21%), Positives = 157/386 (40%), Gaps = 49/386 (12%)
Query: 84 IGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYL 143
I VIGA +FV A EAGPAV+L+++ +GL ++ + E AV P G Y
Sbjct: 4 IAGVIGASLFV-GSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYA 62
Query: 144 RVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQL 203
+G + G + + ++ + + +I+HS +
Sbjct: 63 DKAIGRW---------------AGYTIGWLYWWFWVLVIPLEANIAAMILHSW------V 101
Query: 204 DPIAVGVSAVICILAV-----VSTKGSSRFNYIASIIHVIVIL-FIIIGGFANADTKNYK 257
I + + +++ LA+ +S K F + ++ VI IL FI +G A + Y
Sbjct: 102 PGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYA 161
Query: 258 ------------AFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGS 305
F P G V A + F+++G + V+ A E+ P K I
Sbjct: 162 EVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSV 221
Query: 306 MAVTTLAYCLLAIALCLMQPYYAINVDA--PFSVAFEAVGWDWAKYVVAFGALKGMTTVL 363
+ ++ Y + + P+ + A + E + AK ++ L +T+ L
Sbjct: 222 IWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCL 281
Query: 364 LVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTA---TAIIAFFTKLNVL 420
+ +R L ++R P + +++ ++ TP A ++ A T ++ ++ V
Sbjct: 282 NSALYTASRMLYSLSRRGDAPAVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVF 340
Query: 421 SNLLSIS---TLFIFMLVAVALLVRR 443
L+ S L +++++AV+ L R
Sbjct: 341 KFLIDSSGAIALLVYLVIAVSQLRMR 366
|
Length = 446 |
| >gnl|CDD|237929 PRK15238, PRK15238, inner membrane transporter YjeM; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 20/133 (15%)
Query: 208 VGVSAVICILAV--VSTKGSSRFNYIASI----IHVIVILFIIIGG---FAN----ADTK 254
VG+ AVI ++ V V++KG ++ + SI + ++ I+ +++ N A
Sbjct: 135 VGILAVIWMILVTFVASKGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPI 194
Query: 255 NYKAFA----PFGTRGVFKASAVLF--FAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAV 308
+F P + S V+F FAY G +AV + ++T+NP K+ P G++ + V
Sbjct: 195 GVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIV 254
Query: 309 TTLAYCLLAIALC 321
++ Y LAI L
Sbjct: 255 ISIGYS-LAIFLW 266
|
Length = 496 |
| >gnl|CDD|182458 PRK10435, cadB, lysine/cadaverine antiporter; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 63/290 (21%), Positives = 119/290 (41%), Gaps = 33/290 (11%)
Query: 85 GAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLR 144
G ++G+GI +L A G + +++S + AM + Y A + P GG AY
Sbjct: 18 GNMMGSGIALLPANLAS--IGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAG 75
Query: 145 VELGDFVAFVAAGNILLEY---VIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYG 201
E+ F +L Y IG A+ + SY +T F ++ +P
Sbjct: 76 -EISPAFGFQTG---VLYYHANWIGNLAIGITAVSYLSTF-------FPVLNDPIPA--- 121
Query: 202 QLDPIAVGVSAVICILAVVSTKGS---SRFNYIASIIHVIVILFIIIGGFANADTKNYKA 258
+ A++ + V+ G SR I ++ +I ++ I G+ D Y A
Sbjct: 122 -----GIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDAATYAA 176
Query: 259 --FAPFGTRG--VFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYC 314
T G + K+ + +A++G ++ + KNP + +P+ + + + Y
Sbjct: 177 NWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYI 236
Query: 315 LLAIALCLMQPYYAI-NVDAPFSVAFEAVGWDWAKYVV-AFGALKGMTTV 362
+ M P + APF+++ + +WA +V AF A +T++
Sbjct: 237 AATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSL 286
|
Length = 435 |
| >gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 54/425 (12%), Positives = 124/425 (29%), Gaps = 37/425 (8%)
Query: 64 ARSEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSV 123
S + + LI G IGAG+ L P ++L +++ LS+
Sbjct: 1 VLSSMKKTSSDLGGVLIL--AGTAIGAGVLFLPVAFGGGGFWPGLLL-LIIAWPLTYLSL 57
Query: 124 FCYTEFAVEIPV-AGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLC 182
E + P + + LG + I L Y + ++
Sbjct: 58 LLLLEALLSSPNGKASITSLVEDYLGKKGGIL----IGLSYFFALYGLLVAYIVGIGN-- 111
Query: 183 NKQPEDFRIIVHSMPEDYGQ--LDPIAVGVSAVICILAVV--STKGSSRFNYIASIIHVI 238
++ + +G L + + + + T + + VI
Sbjct: 112 --------LLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVI 163
Query: 239 VILFIIIGGFANADTKNYKAFAPFGT---RGVFKASAVLFFAYIGFDAVSTMAEETKNPA 295
++ +++ + + N A + + A V F++ + ++ + +
Sbjct: 164 YLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNS 223
Query: 296 KD-IPIGLVGSMAVTTLAY--CLLAIALCLMQPYYA------INVDAPFSVAFEAVGWDW 346
K + ++ + + Y + C + + S +
Sbjct: 224 KKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPI 283
Query: 347 AKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLT 406
+ AL + T L +G L + + P + T P ++
Sbjct: 284 LSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYP 343
Query: 407 ATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLIL 466
IA +++ +I I L+ + Y + + L++ +LL
Sbjct: 344 WGFAIALGYAGGLIA---TIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFG 400
Query: 467 ISSIA 471
I I
Sbjct: 401 ILVIL 405
|
Length = 415 |
| >gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 58/325 (17%), Positives = 103/325 (31%), Gaps = 73/325 (22%)
Query: 206 IAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFANADTKNYKAFA----- 260
V+ ++ + ++ + +I ++ IL I +G A K K F
Sbjct: 206 YGTVTVVVLLGISFAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNE 265
Query: 261 ----------PFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTT 310
P G F + F + G A + ++ + K+P K IP G + ++ TT
Sbjct: 266 IFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTT 325
Query: 311 LAYCLLAI----------------------------ALCLMQP--YYAINVDAPFSVAFE 340
+ Y + + C Y +N V
Sbjct: 326 VVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMN---NLQVMSL 382
Query: 341 AVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMP--PWLAQVHGKTGTPV 398
+ F A L S V R + + ++ P + + +GK G P+
Sbjct: 383 VSPFPPLITAGIFSATLSSA---LASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPL 439
Query: 399 NATIVMLTATAIIAF--FTKLNV----LSNLLSISTLFIFMLVAVALLVR--------RY 444
A + LTA F +LN +SN S I A L+R +Y
Sbjct: 440 RAYL--LTAFIAEGFILIAELNTIAPIISNFFLASYALINFSCFHASLLRSPGWRPRFKY 497
Query: 445 YVSGVTTTANQVKLIVCILLILISS 469
Y + + +C ++ + S
Sbjct: 498 Y----HWWLSLLGASLCCAIMFLIS 518
|
[Transport and binding proteins, Other]. Length = 953 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| TIGR00906 | 557 | 2A0303 cationic amino acid transport permease. | 100.0 | |
| PRK15049 | 499 | L-asparagine permease; Provisional | 100.0 | |
| KOG1289 | 550 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| PRK11387 | 471 | S-methylmethionine transporter; Provisional | 100.0 | |
| PRK10249 | 458 | phenylalanine transporter; Provisional | 100.0 | |
| PRK10746 | 461 | putative transport protein YifK; Provisional | 100.0 | |
| TIGR00908 | 442 | 2A0305 ethanolamine permease. The three genes used | 100.0 | |
| PRK11357 | 445 | frlA putative fructoselysine transporter; Provisio | 100.0 | |
| PRK10644 | 445 | arginine:agmatin antiporter; Provisional | 100.0 | |
| COG0833 | 541 | LysP Amino acid transporters [Amino acid transport | 100.0 | |
| PRK10655 | 438 | potE putrescine transporter; Provisional | 100.0 | |
| TIGR00909 | 429 | 2A0306 amino acid transporter. | 100.0 | |
| TIGR01773 | 452 | GABAperm gamma-aminobutyrate permease. GabP is hig | 100.0 | |
| PRK10238 | 456 | aromatic amino acid transporter; Provisional | 100.0 | |
| TIGR03428 | 475 | ureacarb_perm permease, urea carboxylase system. A | 100.0 | |
| PRK10836 | 489 | lysine transporter; Provisional | 100.0 | |
| PRK10580 | 457 | proY putative proline-specific permease; Provision | 100.0 | |
| PRK11049 | 469 | D-alanine/D-serine/glycine permease; Provisional | 100.0 | |
| TIGR00907 | 482 | 2A0304 amino acid permease (GABA permease). | 100.0 | |
| PRK10435 | 435 | cadB lysine/cadaverine antiporter; Provisional | 100.0 | |
| COG1113 | 462 | AnsP Gamma-aminobutyrate permease and related perm | 100.0 | |
| TIGR00911 | 501 | 2A0308 L-type amino acid transporter. | 100.0 | |
| TIGR00913 | 478 | 2A0310 amino acid permease (yeast). | 100.0 | |
| KOG1286 | 554 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| TIGR00905 | 473 | 2A0302 transporter, basic amino acid/polyamine ant | 100.0 | |
| KOG1287 | 479 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| PRK10197 | 446 | gamma-aminobutyrate transporter; Provisional | 100.0 | |
| PRK11021 | 410 | putative transporter; Provisional | 100.0 | |
| TIGR00930 | 953 | 2a30 K-Cl cotransporter. | 100.0 | |
| TIGR03810 | 468 | arg_ornith_anti arginine/ornithine antiporter. Mem | 100.0 | |
| TIGR03813 | 474 | put_Glu_GABA_T putative glutamate/gamma-aminobutyr | 100.0 | |
| TIGR00910 | 507 | 2A0307_GadC glutamate:gamma-aminobutyrate antiport | 100.0 | |
| PF13520 | 426 | AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G | 100.0 | |
| COG0531 | 466 | PotE Amino acid transporters [Amino acid transport | 100.0 | |
| PRK15238 | 496 | inner membrane transporter YjeM; Provisional | 100.0 | |
| PF00324 | 478 | AA_permease: Amino acid permease; InterPro: IPR004 | 100.0 | |
| TIGR00837 | 381 | araaP aromatic amino acid transport protein. aroma | 99.97 | |
| KOG1288 | 945 | consensus Amino acid transporters [Amino acid tran | 99.96 | |
| KOG2082 | 1075 | consensus K+/Cl- cotransporter KCC1 and related tr | 99.95 | |
| TIGR00912 | 359 | 2A0309 spore germination protein (amino acid perme | 99.92 | |
| KOG2083 | 643 | consensus Na+/K+ symporter [Inorganic ion transpor | 99.88 | |
| TIGR00796 | 378 | livcs branched-chain amino acid uptake carrier. tr | 99.87 | |
| PHA02764 | 399 | hypothetical protein; Provisional | 99.85 | |
| PF03222 | 394 | Trp_Tyr_perm: Tryptophan/tyrosine permease family; | 99.82 | |
| TIGR00814 | 397 | stp serine transporter. The HAAAP family includes | 99.77 | |
| PRK09664 | 415 | tryptophan permease TnaB; Provisional | 99.75 | |
| PRK10483 | 414 | tryptophan permease; Provisional | 99.75 | |
| PRK15132 | 403 | tyrosine transporter TyrP; Provisional | 99.73 | |
| COG0814 | 415 | SdaC Amino acid permeases [Amino acid transport an | 99.68 | |
| PF03845 | 320 | Spore_permease: Spore germination protein; InterPr | 99.68 | |
| PRK13629 | 443 | threonine/serine transporter TdcC; Provisional | 99.63 | |
| PF01235 | 416 | Na_Ala_symp: Sodium:alanine symporter family; Inte | 99.33 | |
| KOG1303 | 437 | consensus Amino acid transporters [Amino acid tran | 99.23 | |
| PLN03074 | 473 | auxin influx permease; Provisional | 99.22 | |
| TIGR00835 | 425 | agcS amino acid carrier protein. Members of the AG | 99.22 | |
| KOG1304 | 449 | consensus Amino acid transporters [Amino acid tran | 99.16 | |
| COG1115 | 452 | AlsT Na+/alanine symporter [Amino acid transport a | 99.15 | |
| PTZ00206 | 467 | amino acid transporter; Provisional | 99.14 | |
| PRK11375 | 484 | allantoin permease; Provisional | 99.13 | |
| PF13906 | 51 | AA_permease_C: C-terminus of AA_permease | 99.03 | |
| COG3949 | 349 | Uncharacterized membrane protein [Function unknown | 98.99 | |
| COG1457 | 442 | CodB Purine-cytosine permease and related proteins | 98.91 | |
| PRK11017 | 404 | codB cytosine permease; Provisional | 98.9 | |
| COG1953 | 497 | FUI1 Cytosine/uracil/thiamine/allantoin permeases | 98.72 | |
| PRK09442 | 483 | panF sodium/panthothenate symporter; Provisional | 98.69 | |
| PF01490 | 409 | Aa_trans: Transmembrane amino acid transporter pro | 98.67 | |
| TIGR00800 | 442 | ncs1 NCS1 nucleoside transporter family. The NCS1 | 98.64 | |
| TIGR02119 | 471 | panF sodium/pantothenate symporter. Pantothenate ( | 98.55 | |
| TIGR02121 | 487 | Na_Pro_sym sodium/proline symporter. This family c | 98.51 | |
| TIGR00813 | 407 | sss transporter, SSS family. have different number | 98.5 | |
| PRK15419 | 502 | proline:sodium symporter PutP; Provisional | 98.35 | |
| PRK00701 | 439 | manganese transport protein MntH; Reviewed | 98.34 | |
| PF05525 | 427 | Branch_AA_trans: Branched-chain amino acid transpo | 98.34 | |
| COG0733 | 439 | Na+-dependent transporters of the SNF family [Gene | 98.32 | |
| PF00474 | 406 | SSF: Sodium:solute symporter family; InterPro: IPR | 98.2 | |
| PRK12488 | 549 | acetate permease; Provisional | 98.2 | |
| COG1914 | 416 | MntH Mn2+ and Fe2+ transporters of the NRAMP famil | 98.16 | |
| PF01566 | 358 | Nramp: Natural resistance-associated macrophage pr | 98.16 | |
| COG0591 | 493 | PutP Na+/proline symporter [Amino acid transport a | 98.13 | |
| PRK10484 | 523 | putative transporter; Provisional | 98.07 | |
| PRK09395 | 551 | actP acetate permease; Provisional | 98.06 | |
| TIGR02358 | 386 | thia_cytX probable hydroxymethylpyrimidine transpo | 98.06 | |
| PRK15433 | 439 | branched-chain amino acid transport system 2 carri | 97.99 | |
| TIGR03648 | 552 | Na_symport_lg probable sodium:solute symporter, VC | 97.9 | |
| TIGR02711 | 549 | symport_actP cation/acetate symporter ActP. Member | 97.9 | |
| KOG1305 | 411 | consensus Amino acid transporter protein [Amino ac | 97.87 | |
| PF02133 | 440 | Transp_cyt_pur: Permease for cytosine/purines, ura | 97.8 | |
| PLN00151 | 852 | potassium transporter; Provisional | 97.57 | |
| PF02028 | 485 | BCCT: BCCT family transporter; InterPro: IPR000060 | 97.51 | |
| COG1114 | 431 | BrnQ Branched-chain amino acid permeases [Amino ac | 97.49 | |
| PF02705 | 534 | K_trans: K+ potassium transporter; InterPro: IPR00 | 97.42 | |
| KOG2466 | 572 | consensus Uridine permease/thiamine transporter/al | 97.18 | |
| PLN00149 | 779 | potassium transporter; Provisional | 96.72 | |
| COG4147 | 529 | DhlC Predicted symporter [General function predict | 96.5 | |
| TIGR00794 | 688 | kup potassium uptake protein. Proteins of the KUP | 96.31 | |
| PRK09950 | 506 | putative transporter; Provisional | 96.3 | |
| PLN00148 | 785 | potassium transporter; Provisional | 96.15 | |
| COG4145 | 473 | PanF Na+/panthothenate symporter [Coenzyme metabol | 95.89 | |
| PLN00150 | 779 | potassium ion transporter family protein; Provisio | 95.74 | |
| COG1292 | 537 | BetT Choline-glycine betaine transporter [Cell env | 95.71 | |
| PRK09928 | 679 | choline transport protein BetT; Provisional | 95.09 | |
| PRK10745 | 622 | trkD potassium transport protein Kup; Provisional | 94.77 | |
| TIGR00842 | 453 | bcct choline/carnitine/betaine transport. properti | 94.73 | |
| PRK03356 | 504 | L-carnitine/gamma-butyrobetaine antiporter; Provis | 94.13 | |
| PF00209 | 523 | SNF: Sodium:neurotransmitter symporter family; Int | 93.28 | |
| PF02667 | 453 | SCFA_trans: Short chain fatty acid transporter; In | 89.48 | |
| KOG2349 | 585 | consensus Na+:iodide/myo-inositol/multivitamin sym | 87.85 | |
| TIGR00910 | 507 | 2A0307_GadC glutamate:gamma-aminobutyrate antiport | 87.66 | |
| TIGR01197 | 390 | nramp NRAMP (natural resistance-associated macroph | 85.05 |
| >TIGR00906 2A0303 cationic amino acid transport permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-65 Score=558.19 Aligned_cols=499 Identities=43% Similarity=0.708 Sum_probs=411.9
Q ss_pred ccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhh
Q 007398 67 EHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVE 146 (605)
Q Consensus 67 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 146 (605)
+++++|+++.+|+++++++.++|+|+|..++.++...+||+.+++|+++++.+++.+++|+|+++++|++||.|+|+++.
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~ 102 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVT 102 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHH
Confidence 45689999999999999999999999999998876568999999999999999999999999999999999999999999
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCC--cCchhHHHHHHHHHHHHHHHhcchh
Q 007398 147 LGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPED--YGQLDPIAVGVSAVICILAVVSTKG 224 (605)
Q Consensus 147 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~g~~~ 224 (605)
+||.+||++||.+++.|+...+..+..++.|+..+++.....+.....+...+ .....+++++++++++.+|.+|+|.
T Consensus 103 ~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~ 182 (557)
T TIGR00906 103 VGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKE 182 (557)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhH
Confidence 99999999999999999999999999999999887753221111100000000 0123467778888889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccccCCCC--------ccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCC
Q 007398 225 SSRFNYIASIIHVIVILFIIIGGFANADTKNYK--------AFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAK 296 (605)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r 296 (605)
.+|+|++++.++++.++++++.++.+.+.+|+. ++.|.++.+++.+...++|+|.|+|.+++++||+|||+|
T Consensus 183 s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r 262 (557)
T TIGR00906 183 SAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQR 262 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccc
Confidence 999999999999999988888888777666654 667778889999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007398 297 DIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTH 376 (605)
Q Consensus 297 ~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 376 (605)
|+|||++.++.+++++|++..+++....|+++++.++|+..+++..+.++...++.++.+.+.+++.++.+++.+|++|+
T Consensus 263 ~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~a 342 (557)
T TIGR00906 263 AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYA 342 (557)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888889999999888888889999999999999999999999999999
Q ss_pred HHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc-cc--
Q 007398 377 IARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTT-TA-- 453 (605)
Q Consensus 377 ~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~-~~-- 453 (605)
|||||.+|++|+|+|||+++|++|+++.++++.++.++.+++.+.++.+++.++.|.+.+++++++|++++...+ |.
T Consensus 343 marDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~~ 422 (557)
T TIGR00906 343 MARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDT 422 (557)
T ss_pred HHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 999999999999999999999999999999998888888999999999999999999999999999877521100 00
Q ss_pred --------------------chhHHHHHHHHHHHHHHHHHHhcccc-cccch--hhhHHHHHHHHHHHHHHHhccCCCCC
Q 007398 454 --------------------NQVKLIVCILLILISSIATAAYWGLS-KHGWI--GYCITVPIWFLGTLYLAVFVPQARAP 510 (605)
Q Consensus 454 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (605)
+....-..+..++....+....+... ...++ ...++..++.+.........|+...+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (557)
T TIGR00906 423 DEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQK 502 (557)
T ss_pred cccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 00000011111111111111112111 11222 33334444444444444555555558
Q ss_pred CccccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhccccc
Q 007398 511 KLWGVPLVPWLPSASIAINIFLLGSIDRASFARFGVWTVILLLYYIFFGLHASYD 565 (605)
Q Consensus 511 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 565 (605)
++||+|.+|++|+++++.|++++.+++..+|+.+.+|+++|++.|+.|++||+++
T Consensus 503 ~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~ 557 (557)
T TIGR00906 503 VAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557 (557)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 8999999999999999999999999999999999999999999999999999753
|
|
| >PRK15049 L-asparagine permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-56 Score=481.50 Aligned_cols=364 Identities=19% Similarity=0.321 Sum_probs=311.9
Q ss_pred ccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhh
Q 007398 67 EHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVE 146 (605)
Q Consensus 67 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 146 (605)
++++||+++.+++.++++|.++|+|+|..++..... +||..+++|++++++.++.+++++||++++|++||.|+|+++.
T Consensus 23 ~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~-aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 23 EEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQM-AGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred chhhhccCCHhHhHHHhhhccccchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 345999999999999999999999999999999876 8999888999999999999999999999999999999999999
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhh
Q 007398 147 LGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQ-PEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGS 225 (605)
Q Consensus 147 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 225 (605)
+||..||++||.++++|....+......+.++...-... .+ .+.++.+++++++.+|++|+|..
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~iN~~gvk~~ 166 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVP---------------QWVFALAALTIVGTMNMIGVKWF 166 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998776666655566654321110 11 22567778888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc---ccc--CC---C------CccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhh
Q 007398 226 SRFNYIASIIHVIVILFIIIGGFAN---ADT--KN---Y------KAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEET 291 (605)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~i~~~~~---~~~--~~---~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 291 (605)
++++.+++++|++.++.+++.++.. .+. .+ + .++.|+++.+++.++..++|+|.|+|.+++++||+
T Consensus 167 ~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~ 246 (499)
T PRK15049 167 AEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC 246 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 9999999999988877766655431 111 01 1 13445666677778888999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007398 292 KNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAIN-VDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQ 370 (605)
Q Consensus 292 k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (605)
|||+|++|||+..++..+.++|++...++...+|.+++. .++|+.++++..|.++...++.+..+++.+++.++.+++.
T Consensus 247 knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~ 326 (499)
T PRK15049 247 KDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCT 326 (499)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988774 4579999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007398 371 ARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF------TKLNVLSNLLSISTLFIFMLVAVALLVRRY 444 (605)
Q Consensus 371 sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~ 444 (605)
||++|+|||||.+|++|+|+| |+++|++|++++++++++..++ ..++.+.++.+++.++.|.+++++.+++|+
T Consensus 327 sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~ 405 (499)
T PRK15049 327 GRILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRK 405 (499)
T ss_pred HHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 8899999999988876543222 358899999999999999999999999887
Q ss_pred hcC
Q 007398 445 YVS 447 (605)
Q Consensus 445 ~~~ 447 (605)
+.+
T Consensus 406 ~~~ 408 (499)
T PRK15049 406 AIK 408 (499)
T ss_pred hhh
Confidence 643
|
|
| >KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-56 Score=454.06 Aligned_cols=466 Identities=17% Similarity=0.253 Sum_probs=383.9
Q ss_pred cccCCCChhHhHHhhhccccccccccChHHHHHHHhhhhcc-chhhhcchHhHhhhcCc-hHHHHHHHHHHHHHHHHHHH
Q 007398 49 VLTRSLDTTEIHEIKARSEHEMKKTLTWWDLIWFGIGAVIG-AGIFVLTGQEARQEAGP-AVVLSFVVSGLSAMLSVFCY 126 (605)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~~~~~~~ig-~gi~~~~~~~~~~~~G~-~~~~~~il~~~~~~~~a~~~ 126 (605)
..++++|++++.+++ +||++||++++|+.+.++++.+-- .|+-.+....... +|| ...|+|++++++.+++++++
T Consensus 27 v~~~~~d~~~L~~lg--Ykqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~-gG~~~~vwgwlIa~~~~i~va~sl 103 (550)
T KOG1289|consen 27 VPEDDSDEELLAELG--YKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGS-GGPPTLVWGWLIAGFFSICVALSL 103 (550)
T ss_pred CccccCCHHHHHHcC--CchhhhhhhhHHHHHHHHHHHhcchhhhhhheeecccc-CChHHHHHHHHHHHHHHHHHHhHH
Confidence 344566777888888 999999999999999999997721 3444333333333 555 59999999999999999999
Q ss_pred hhhhhccccCCchhhhhhh----hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCc
Q 007398 127 TEFAVEIPVAGGSFAYLRV----ELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQ 202 (605)
Q Consensus 127 ael~s~~P~~GG~y~~~~~----~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 202 (605)
+|+++++|++||.|.|+.. .+||..+|++||...+++....++...+.++.+.......++.+. .....
T Consensus 104 aEl~Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~-------~~~~~ 176 (550)
T KOG1289|consen 104 AELCSAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYE-------PTNYH 176 (550)
T ss_pred HHHHhhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCc-------ccceE
Confidence 9999999999999999985 778899999999999999999999999999999987755443331 11223
Q ss_pred hhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhccc--------------cCCCCccCCCChhHHH
Q 007398 203 LDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFANAD--------------TKNYKAFAPFGTRGVF 268 (605)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~--------------~~~~~~~~~~g~~~~~ 268 (605)
...+..++.++.+++|....|..++++.+...+.++.+++.+|..+...+ .+|.++|.+.||. ++
T Consensus 177 ~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~a-fi 255 (550)
T KOG1289|consen 177 QFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWA-FI 255 (550)
T ss_pred eehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHH-HH
Confidence 45889999999999999999999999999999999988887777665332 2334456555655 88
Q ss_pred HHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccc-c--CC--CChHHHHHHHhC
Q 007398 269 KASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYA-I--NV--DAPFSVAFEAVG 343 (605)
Q Consensus 269 ~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~-~--~~--~~p~~~~~~~~g 343 (605)
.++....|.+.|+|+++|++||+|||+|+.||||+.++.+..++.....+.+.+++++|. . ++ ++|+.+++...-
T Consensus 256 l~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~l 335 (550)
T KOG1289|consen 256 LGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQAL 335 (550)
T ss_pred HhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhc
Confidence 889999999999999999999999999999999999999999999999999998888542 2 22 479999987544
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCc--hhhhhhcCCCcchhHHHHHHHHHHHHHHHh-----hc
Q 007398 344 WDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMP--PWLAQVHGKTGTPVNATIVMLTATAIIAFF-----TK 416 (605)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP--~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~-----~~ 416 (605)
++-....+....+++.+.+..+++.+.||+.|+.||||.|| ++++|+||++++|.+|+++..+++.++.++ .+
T Consensus 336 g~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~A 415 (550)
T KOG1289|consen 336 GKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATA 415 (550)
T ss_pred CCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 44444777888888888899999999999999999999999 999999999999999999999999888776 47
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Q 007398 417 LNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLG 496 (605)
Q Consensus 417 ~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 496 (605)
++++.+.+.++..++|..+.++.+..+|++ .||.+ |++|+.+. +.++++++|.++
T Consensus 416 f~Alfs~a~i~l~~Ay~iP~~~rlf~~r~~---f~~gp---------------------~~lGk~s~-p~~~i~v~w~lf 470 (550)
T KOG1289|consen 416 FNALFSAAAIALFIAYAIPIFCRLFFGRDD---FRPGP---------------------FNLGKFSK-PIGIIAVLWVLF 470 (550)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhheeecccc---cCCCC---------------------cccccccc-chHHHHHHHHHH
Confidence 899999999999999999999888766652 22223 88888888 788888999999
Q ss_pred HHHHHHhccCCCCCCccccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhccccccccccCCCc
Q 007398 497 TLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARFGVWTVILLLYYIFFGLHASYDTAKASGEND 574 (605)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~ 574 (605)
.+++.++|...+.. + -+|||.. ++.++.++.++++|+.++||. +++|+....+|
T Consensus 471 ~~vil~fP~~~pvT-----------~-----------~~MNya~-VV~gg~~lf~li~~~~~~~k~-f~gP~~~~~~~ 524 (550)
T KOG1289|consen 471 MIVILCFPSVYPVT-----------A-----------DNMNYAC-VVYGGVMLFCLIYYFVSARKW-FKGPIPSVLEE 524 (550)
T ss_pred HHHHHhCCcccCCC-----------c-----------ccCceEE-Eeehhhhhhhhheeeeeccee-ecCCccccccc
Confidence 99999999984443 2 4888865 667777888999998885555 88888776533
|
|
| >PRK11387 S-methylmethionine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-54 Score=465.22 Aligned_cols=422 Identities=21% Similarity=0.291 Sum_probs=346.6
Q ss_pred ccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCc-hHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhh
Q 007398 67 EHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGP-AVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRV 145 (605)
Q Consensus 67 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 145 (605)
++++||+++.+++++++++.++|+|+|..++..+.. +|| +.+++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus 9 ~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~-~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~ 87 (471)
T PRK11387 9 AGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIIST-TGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAAR 87 (471)
T ss_pred chhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 346899999999999999999999999999999877 887 489999999999999999999999999999999999999
Q ss_pred hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhh
Q 007398 146 ELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGS 225 (605)
Q Consensus 146 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 225 (605)
.+||..||.+||.+|++|....+......+.+++.+++. .+. .....+++++++.+|++|+|..
T Consensus 88 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~---------------~~~~~~~~~~~~~in~~gvk~~ 151 (471)
T PRK11387 88 YLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ-VPV---------------WPWCLLFCALIFGLNVVSTRFF 151 (471)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-CcH---------------HHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999888877766666565543321 111 1344555677889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcc------cc-------CCC--CccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhh
Q 007398 226 SRFNYIASIIHVIVILFIIIGGFANA------DT-------KNY--KAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEE 290 (605)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~i~~~~~~------~~-------~~~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E 290 (605)
++++.+++.+|++.++.+++.++... +. +++ .++.|++..+++.++..++|+|.|+|.+++++||
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 231 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGE 231 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999988776666554210 00 111 1233555567888889999999999999999999
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007398 291 TKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAIN-VDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVG 369 (605)
Q Consensus 291 ~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (605)
+|||+||+|||++.++.++.++|++..+++....|.++.. .++|+.++++..+++++..++.+..+++.+++.++.+++
T Consensus 232 ~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~ 311 (471)
T PRK11387 232 TENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYA 311 (471)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888877764 467999999999989999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007398 370 QARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF------TKLNVLSNLLSISTLFIFMLVAVALLVRR 443 (605)
Q Consensus 370 ~sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~y~~~~~~~~~~r 443 (605)
.||++|+|||||.+|++|+|+| |+++|++|++++.+++++..+. ..++.+.++.++..++.|++.+++.+++|
T Consensus 312 ~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr 390 (471)
T PRK11387 312 SGRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFR 390 (471)
T ss_pred hhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 6799999999887665433332 13567888999999999999999999988
Q ss_pred hhcCCCccccchhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHH
Q 007398 444 YYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPS 523 (605)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 523 (605)
++++++.+ +..+++||.|.+|+.|+
T Consensus 391 ~~~~~~~~-------------------------------------------------------~~~~~~~~~~~~~~~~~ 415 (471)
T PRK11387 391 RRHLRDGK-------------------------------------------------------ALSELAYRAPWYPLTPI 415 (471)
T ss_pred HHHHhcCC-------------------------------------------------------CCCCCCccCCCccHHHH
Confidence 87654321 23457799999999999
Q ss_pred HHHHHHHHHHhcCChhh-----HHHHHHHHHHHHHHHHHHhhc
Q 007398 524 ASIAINIFLLGSIDRAS-----FARFGVWTVILLLYYIFFGLH 561 (605)
Q Consensus 524 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~y~~~~~~ 561 (605)
++++.+++++..+.+.. .....++++++.+.|.+++|+
T Consensus 416 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T PRK11387 416 LGFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRL 458 (471)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99998887776543222 234555667777777776444
|
|
| >PRK10249 phenylalanine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=456.43 Aligned_cols=363 Identities=22% Similarity=0.338 Sum_probs=316.2
Q ss_pred cccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhh
Q 007398 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRV 145 (605)
Q Consensus 66 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 145 (605)
++++++|+++.+|+.++++|.++|+|+|..++..... +||..+++|+++++++++.+++++|+++++|++||.|.|+++
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~-aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQM-AGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 4567999999999999999999999999999999876 899999999999999999999999999999999999999999
Q ss_pred hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhh
Q 007398 146 ELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGS 225 (605)
Q Consensus 146 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 225 (605)
.+||.+||++||.+|+.+....+......+.+++.+++.. + ...+..+++++.+.+|++|+|..
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~---------------~~~~~~~~~~l~~~lN~~gv~~~ 157 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV-P---------------TWIWAAAFFIIINAVNLVNVRLY 157 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-c---------------HHHHHHHHHHHHHHHHHhcchhh
Confidence 9999999999999999998888888777777877654321 1 12556777888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc---cc------cCC-C--CccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcC
Q 007398 226 SRFNYIASIIHVIVILFIIIGGFAN---AD------TKN-Y--KAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKN 293 (605)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~i~~~~~---~~------~~~-~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~ 293 (605)
++++.+++.+|++.++.+++.++.. .+ .++ + .++.|+++.+++.++...+|+|.|+|.+++++||+||
T Consensus 158 ~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~ 237 (458)
T PRK10249 158 GETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARD 237 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcC
Confidence 9999999999988776665554321 11 111 1 1234567888999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 007398 294 PAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAIN-VDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQAR 372 (605)
Q Consensus 294 p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 372 (605)
|+|++|||+..++..+.++|++..++.....|+++.. .++|+.++++..++++...++.+..+++.+++.++.+++.||
T Consensus 238 P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR 317 (458)
T PRK10249 238 PEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSR 317 (458)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888888887764 357999999988888888888999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007398 373 YLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF------TKLNVLSNLLSISTLFIFMLVAVALLVRRYYV 446 (605)
Q Consensus 373 ~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~ 446 (605)
++|+|||||.+|++|+|+| |+++|++|++++.+++.+..++ ..++.+.++.+...++.|.+++++.+++|++.
T Consensus 318 ~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~ 396 (458)
T PRK10249 318 MLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAM 396 (458)
T ss_pred HHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 7799999999999988766544 25788999999999999999999999888653
|
|
| >PRK10746 putative transport protein YifK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-53 Score=452.35 Aligned_cols=421 Identities=19% Similarity=0.299 Sum_probs=353.1
Q ss_pred cccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhh
Q 007398 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRV 145 (605)
Q Consensus 66 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 145 (605)
.++++||+++.+|+.++++|+++|+|+|..++..... +||+.+++|++++++.++++++++|+++++|++||.|+|++|
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~-aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~ 82 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKW-AGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHR 82 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4567899999999999999999999999999999877 899989999999999999999999999999999999999999
Q ss_pred hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhh
Q 007398 146 ELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGS 225 (605)
Q Consensus 146 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 225 (605)
.+||.+||.+||.+|+.|....+.+....+.+++.+++. .+ ...+..+++++.+.+|++|+|..
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-~~---------------~~~~~~~~~~~~~~lN~~gv~~~ 146 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-MA---------------QWIPALIAVALVALANLAAVRLY 146 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-Cc---------------hHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999988888888888888776542 11 12456667778888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc-----c---c---cCCCC---ccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhh
Q 007398 226 SRFNYIASIIHVIVILFIIIGGFAN-----A---D---TKNYK---AFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEET 291 (605)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~i~~~~~-----~---~---~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 291 (605)
+++|.+++.+|++.++++++.++.. . + .+|+. ++.++|+.++..++..++|+|.|+|.+++.+||+
T Consensus 147 ~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~ 226 (461)
T PRK10746 147 GEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA 226 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 9999999999988776666554321 1 1 12221 2445678889999999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007398 292 KNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINV-DAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQ 370 (605)
Q Consensus 292 k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (605)
|||+|++|||+..++..+.++|++..+++....|+++... ++|+.++++..+.+....++.+..+++.+++.|+.+++.
T Consensus 227 knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~ 306 (461)
T PRK10746 227 KNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSC 306 (461)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888999988754 579999999888888888899999999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHH---HHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007398 371 ARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAI---IAFF-----TKLNVLSNLLSISTLFIFMLVAVALLVR 442 (605)
Q Consensus 371 sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~---~~~~-----~~~~~l~~~~~~~~~~~y~~~~~~~~~~ 442 (605)
||++|+|||||.+|++|+|+| |+|+|++|++++.+..++ +.+. ..++.+.++.+...++.|.+.+++.+++
T Consensus 307 sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~ 385 (461)
T PRK10746 307 GRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRF 385 (461)
T ss_pred HHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 889999999987654322 1111 2478899999999999999999999999
Q ss_pred hhhcCCCccccchhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCCCCCccccccccHHH
Q 007398 443 RYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLP 522 (605)
Q Consensus 443 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 522 (605)
|+++|+. .++++||.|.+|+.+
T Consensus 386 r~~~~~~----------------------------------------------------------~~~~~~~~~~~p~~~ 407 (461)
T PRK10746 386 RRAHKAA----------------------------------------------------------IASHPFRSILFPWAN 407 (461)
T ss_pred HHhcccc----------------------------------------------------------ccCCCCcCCCccHHH
Confidence 9886531 234678888999999
Q ss_pred HHHHHHHHHHHhcCC-----hhhHHHHHHHHHHHHHHHHHHhhcc
Q 007398 523 SASIAINIFLLGSID-----RASFARFGVWTVILLLYYIFFGLHA 562 (605)
Q Consensus 523 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~y~~~~~~~ 562 (605)
+++++.++.++..+. ..+......++++..+.|+.|++.+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 452 (461)
T PRK10746 408 YLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNR 452 (461)
T ss_pred HHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888777754431 1344555566677778887775554
|
|
| >TIGR00908 2A0305 ethanolamine permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-53 Score=450.59 Aligned_cols=420 Identities=21% Similarity=0.311 Sum_probs=348.9
Q ss_pred ccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhh
Q 007398 67 EHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRV 145 (605)
Q Consensus 67 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 145 (605)
++++||+++.++.++++++.++| |.+...+..... +||. .++++++++++.++.+++++|+++++|++||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~-~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQ-GGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 56799999999999999999997 777766666555 7886 78899999999999999999999999999999999999
Q ss_pred hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhh
Q 007398 146 ELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGS 225 (605)
Q Consensus 146 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 225 (605)
.+||..||++||.+++.|....+.++..+++|+...++..+ ....+.+++++.+.+|++|+|..
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~----------------~~~~~~~~~~~~~~ln~~g~~~~ 143 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP----------------GWLAALVFYIVFIGINILGVGEA 143 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----------------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988764321 12566777788889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccCCC--------CccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCc
Q 007398 226 SRFNYIASIIHVIVILFIIIGGFANADTKNY--------KAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKD 297 (605)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~ 297 (605)
++++.++++++++.+++++.....+.+..++ +++.+.++.+++.++..++|+|.|+|.+++++||+|||+||
T Consensus 144 ~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ 223 (442)
T TIGR00908 144 AKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRD 223 (442)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 9999999998888765554443332222221 23445566778889999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHh-Ch-hHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 007398 298 IPIGLVGSMAVTTLAYCLLAIALCLMQPYYAIN-VDAPFSVAFEAV-GW-DWAKYVVAFGALKGMTTVLLVSAVGQARYL 374 (605)
Q Consensus 298 vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 374 (605)
+|||++.++.++.++|+....+.....+.+++. .++|+.++++.. |+ .+...++.+..+++.+++.++.+++.||++
T Consensus 224 iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l 303 (442)
T TIGR00908 224 IPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQI 303 (442)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877766667766663 467998888754 32 456667777778888999999999999999
Q ss_pred HHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccc
Q 007398 375 THIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTAN 454 (605)
Q Consensus 375 ~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~ 454 (605)
++|||||.+|++|+|+| |+|+|++|+++++++++++.+..+.+.+.++.+.+.++.|.+.+++++++|+++|+
T Consensus 304 ~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~------ 376 (442)
T TIGR00908 304 FALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPD------ 376 (442)
T ss_pred HHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------
Confidence 99999999999999999 99999999999999998887777788889999999999999999999998887543
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHHHh
Q 007398 455 QVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLG 534 (605)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 534 (605)
.++|||.|..|+.|+++++.+++++.
T Consensus 377 ------------------------------------------------------~~rp~~~p~~~~~~~l~~~~~~~~l~ 402 (442)
T TIGR00908 377 ------------------------------------------------------MERPYRTPGGILTPGVALVLACVALV 402 (442)
T ss_pred ------------------------------------------------------CCCCccCCCcchHHHHHHHHHHHHHH
Confidence 34568888899999999998888776
Q ss_pred cC---ChhhHHHHHHHHHHHHHHHHHHhhccccc
Q 007398 535 SI---DRASFARFGVWTVILLLYYIFFGLHASYD 565 (605)
Q Consensus 535 ~~---~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 565 (605)
.+ ++..+....++.++..++|++|+|+|+.+
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 403 TGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 54 33333445667777888888887777444
|
The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. |
| >PRK11357 frlA putative fructoselysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-53 Score=451.17 Aligned_cols=421 Identities=22% Similarity=0.330 Sum_probs=347.0
Q ss_pred ccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhh
Q 007398 67 EHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRV 145 (605)
Q Consensus 67 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 145 (605)
+++++|++++++.++++++.++|+|+|..++.+....+++. .+++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~ 82 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKN 82 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHH
Confidence 56799999999999999999999999999998876645565 78999999999999999999999999999999999999
Q ss_pred hhChhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchh
Q 007398 146 ELGDFVAFVAAGNI-LLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKG 224 (605)
Q Consensus 146 ~~g~~~g~~~g~~~-~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 224 (605)
.+||.+|+++||.. +..+....+..+..+++|+....+... +. ...++.+++++++.+|++|+|.
T Consensus 83 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~--~~------------~~~~~~~~~~~~~~ln~~gv~~ 148 (445)
T PRK11357 83 AGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDP--LL------------GKFIAAGLIIAFMLLHLRSVEG 148 (445)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--HH------------HHHHHHHHHHHHHHHHHhhhhH
Confidence 99999999999974 445566677777888888776543211 10 2256667777788999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcc-----CCCC-hhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCch
Q 007398 225 SSRFNYIASIIHVIVILFIIIGGFANADTKNYKAF-----APFG-TRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDI 298 (605)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~-----~~~g-~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~v 298 (605)
.+|+|+++++++++.++++++.++...+.+|+... ...+ +.+++.++..++|+|.|+|.+++++||+|||+||+
T Consensus 149 ~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~i 228 (445)
T PRK11357 149 GAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTM 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccc
Confidence 99999999999999887777776643333332211 1112 45678888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHh--ChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 007398 299 PIGLVGSMAVTTLAYCLLAIALCLMQPYYAIN-VDAPFSVAFEAV--GWDWAKYVVAFGALKGMTTVLLVSAVGQARYLT 375 (605)
Q Consensus 299 p~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 375 (605)
|||+..++.++.++|++...+.....|.|++. .+.|+.++++.. .+++...++.+..+++.+++.++.+.+.+|++|
T Consensus 229 P~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~ 308 (445)
T PRK11357 229 PRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEY 308 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999999999999988888888764 357888888753 344556667777888889999999999999999
Q ss_pred HHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccch
Q 007398 376 HIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQ 455 (605)
Q Consensus 376 a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~ 455 (605)
+|||||.+|++|+|+|||+++|++|+++++++++++.+..+++.+.++.+....+.|.+...+++++|++++
T Consensus 309 a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~-------- 380 (445)
T PRK11357 309 AMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDD-------- 380 (445)
T ss_pred HHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCCC--------
Confidence 999999999999999999999999999999999888888889999999999999999998888887765421
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHHHhc
Q 007398 456 VKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGS 535 (605)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 535 (605)
.+++||.|..|+.|+++++.++++...
T Consensus 381 -----------------------------------------------------~~~~~k~p~~~~~~~~~~~~~~~~~~~ 407 (445)
T PRK11357 381 -----------------------------------------------------YKPLWRTPAFGLMTTLAIASSLILVAS 407 (445)
T ss_pred -----------------------------------------------------CCCCcccCCchHHHHHHHHHHHHHHHH
Confidence 234688999999999999888887642
Q ss_pred ----CChhhHHHHHHHHHHHHHHHHHHhhcc
Q 007398 536 ----IDRASFARFGVWTVILLLYYIFFGLHA 562 (605)
Q Consensus 536 ----~~~~~~~~~~~~~~i~~~~y~~~~~~~ 562 (605)
.....+....+++++++..|+.+++|+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 438 (445)
T PRK11357 408 TFVWAPIPGLICAVIVIATGLPAYAFWAKRS 438 (445)
T ss_pred HHHcCcHHHHHHHHHHHHHhhhHHhheechh
Confidence 233444556778888999888776654
|
|
| >PRK10644 arginine:agmatin antiporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=448.05 Aligned_cols=417 Identities=21% Similarity=0.292 Sum_probs=339.2
Q ss_pred ccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhh
Q 007398 67 EHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVE 146 (605)
Q Consensus 67 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 146 (605)
+.+++|++|.++++++.++.++|+|+|..++..+.. |+..+++|+++++..++.+++++|+++++|++||.|+|+++.
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~--g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~ 80 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAST--GGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRC 80 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHH
Confidence 455789999999999999999999999999886543 556789999999999999999999999999999999999999
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhh
Q 007398 147 LGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSS 226 (605)
Q Consensus 147 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 226 (605)
+||..||++||.+|+.+.............|....++...+.+. ..+++++++++++.+|++|+|..+
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ln~~gvk~~~ 148 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLV------------LTITCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHH------------HHHHHHHHHHHHHHHHHhchHHHH
Confidence 99999999999999988777666665666677665543222222 225677778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCc-cCC---CChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHH
Q 007398 227 RFNYIASIIHVIVILFIIIGGFANADTKNYKA-FAP---FGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGL 302 (605)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~-~~~---~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai 302 (605)
++|++++.++++.++.+++.++...+.+++.+ +.+ .++.++..++..++|+|.|+|.+++++||+|||+|++|||+
T Consensus 149 ~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai 228 (445)
T PRK10644 149 RVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHH
Confidence 99999999999888777777665444333221 211 23456777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcC
Q 007398 303 VGSMAVTTLAYCLLAIALCLMQPYYAIN-VDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTH 381 (605)
Q Consensus 303 ~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg 381 (605)
+.++.++.++|++..++.....|++++. .++|+.++++...+++...++.+..+++.+++.++.+...+|++++|||||
T Consensus 229 ~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg 308 (445)
T PRK10644 229 IGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG 308 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999988887764 467999988876667777788888888999999999999999999999999
Q ss_pred CCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh-------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccc
Q 007398 382 MMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF-------TKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTAN 454 (605)
Q Consensus 382 ~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~ 454 (605)
.+|++|+|+| |+++|++|++++++++.++.+. ..++.+.++.+...+++|.+++++.+++|+|+++.++
T Consensus 309 ~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~--- 384 (445)
T PRK10644 309 LFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKAR--- 384 (445)
T ss_pred CccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc---
Confidence 9999999999 5799999999999998776654 2488899999999999999999999988877542111
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHHHh
Q 007398 455 QVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLG 534 (605)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 534 (605)
|..|+.|+++++.+++++.
T Consensus 385 -------------------------------------------------------------p~~~~~~~~~~~~~~~~~~ 403 (445)
T PRK10644 385 -------------------------------------------------------------PAYLAVTLIAFVYCIWAVV 403 (445)
T ss_pred -------------------------------------------------------------cchhHHHHHHHHHHHHHHH
Confidence 2345677777777777766
Q ss_pred cCChhhHHHHHHHHHHHHHHHHH-Hhhcc
Q 007398 535 SIDRASFARFGVWTVILLLYYIF-FGLHA 562 (605)
Q Consensus 535 ~~~~~~~~~~~~~~~i~~~~y~~-~~~~~ 562 (605)
..++.......++++++.+.|++ ++|||
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 432 (445)
T PRK10644 404 GSGAKEVMWSFVTLMVITAFYALNYNRLH 432 (445)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66655555555556666666644 55544
|
|
| >COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=435.92 Aligned_cols=400 Identities=22% Similarity=0.278 Sum_probs=357.0
Q ss_pred ccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhh
Q 007398 69 EMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVEL 147 (605)
Q Consensus 69 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 147 (605)
++||+|..+|+.++++|..||+|+|+..|....+ +||+ ++++|++.+++.+++..+++||+..+|.+|+...|++|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~-aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQ-AGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 6999999999999999999999999999999987 9998 8999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhH
Q 007398 148 GDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSR 227 (605)
Q Consensus 148 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 227 (605)
+|.+||..||.||+.|.+..+.+..+.+..++.+++..-+ ...+..++.++...+|.+++|..+.
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~---------------~~~w~~iF~~~i~~iN~~~Vk~fGE 184 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVP---------------PWIWIAIFLVLIFLLNLFGVKGFGE 184 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCC---------------hHHHHHHHHHHHHHHHHhcccccce
Confidence 9999999999999999999999999999999988754322 2267788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc----cc------CCC--CccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCC
Q 007398 228 FNYIASIIHVIVILFIIIGGFANA----DT------KNY--KAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPA 295 (605)
Q Consensus 228 ~~~~~~~~~l~~~~~~~i~~~~~~----~~------~~~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~ 295 (605)
.+..+..+|++.++.+++.++... +. +.+ .+.++.|+.+++..+..+.|+|.|.|.....++|.|||+
T Consensus 185 ~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~ 264 (541)
T COG0833 185 TEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR 264 (541)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCch
Confidence 999999999999988888876521 10 011 134567889999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhccccccc---------CCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHH
Q 007398 296 KDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAI---------NVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVS 366 (605)
Q Consensus 296 r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~---------~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 366 (605)
|++|||+.-.+..+.++|++..+.+...+|+++- ...+|+..+++..|.+.++.++++.++++.+++.|+.
T Consensus 265 K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~ 344 (541)
T COG0833 265 KSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSG 344 (541)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999998762 1347999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHH
Q 007398 367 AVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF------TKLNVLSNLLSISTLFIFMLVAVALL 440 (605)
Q Consensus 367 ~~~~sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~y~~~~~~~~ 440 (605)
++++||++|+||+||..||+|+|+| |+|+|++|++++.+++++-.+. ..|++|.++++++..+.|...+++.+
T Consensus 345 lYasSR~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shi 423 (541)
T COG0833 345 LYASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHI 423 (541)
T ss_pred chHHHHHHHHHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 8899999999999888543332 26899999999999999999999999
Q ss_pred HHhhhcCCCccccchhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCCCCCccccccccH
Q 007398 441 VRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPW 520 (605)
Q Consensus 441 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 520 (605)
+.|+..+.+.+ ..++.+||.|.+||
T Consensus 424 rFR~A~~~QG~-------------------------------------------------------s~~~L~yks~~~p~ 448 (541)
T COG0833 424 RFRRAMKAQGR-------------------------------------------------------SLDELPYKSPFGPY 448 (541)
T ss_pred HHHHHHHHcCC-------------------------------------------------------ChhhcCccCCCccH
Confidence 98887544322 23456899999999
Q ss_pred HHHHHHHHHHHHHhcCChhh
Q 007398 521 LPSASIAINIFLLGSIDRAS 540 (605)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~ 540 (605)
.|+.++++++.++..++|.+
T Consensus 449 g~~~~~~~~~li~i~q~y~a 468 (541)
T COG0833 449 GPIYGLILCILILIGQGYVA 468 (541)
T ss_pred HHHHHHHHHHHHHHHcchhe
Confidence 99999999999999876654
|
|
| >PRK10655 potE putrescine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=448.45 Aligned_cols=369 Identities=18% Similarity=0.281 Sum_probs=315.4
Q ss_pred cccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhCh
Q 007398 70 MKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGD 149 (605)
Q Consensus 70 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 149 (605)
++|++|.+++++++++.++|+|+|..++... . +|+..+++|++++++.++.+++|+|+++++|++||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~-~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-Q-VGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 4789999999999999999999999988754 4 6888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHH
Q 007398 150 FVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFN 229 (605)
Q Consensus 150 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 229 (605)
..||++||.+++.+.......+.....|+...++...+.+. ..++.++++++++.+|++|+|..+++|
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~------------~~~~~~~~l~~~~~ln~~g~~~~~~i~ 149 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQ------------ICLATIGVLWLCTVANFGGARITGQIS 149 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHH------------HHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99999999999999887777777777888877654322222 225667777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCC-ccCCCC---hhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHH
Q 007398 230 YIASIIHVIVILFIIIGGFANADTKNYK-AFAPFG---TRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGS 305 (605)
Q Consensus 230 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~ 305 (605)
++.+..+++.++++.+.++...+.+++. ++.+.+ +.++..++..++|+|.|+|.+++++||+|||+||+|||++.+
T Consensus 150 ~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~ 229 (438)
T PRK10655 150 SVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGG 229 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHH
Confidence 9999999888877777766555444443 233333 356777888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCc
Q 007398 306 MAVTTLAYCLLAIALCLMQPYYAIN-VDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMP 384 (605)
Q Consensus 306 ~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP 384 (605)
+.++.++|++...+.....|.+++. +++|+.+.++...+++...++.+..+++.+++.++.+.+.+|+++++||||.+|
T Consensus 230 ~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP 309 (438)
T PRK10655 230 TLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFP 309 (438)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 9999999999988888888877764 467888888877777777888888889999999999999999999999999999
Q ss_pred hhhhhhcCCCcchhHHHHHHHHHHHHHHHh-------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccc
Q 007398 385 PWLAQVHGKTGTPVNATIVMLTATAIIAFF-------TKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTA 453 (605)
Q Consensus 385 ~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~ 453 (605)
++|+|+| |+++|++|++++.+++.++.+. ..++.+.++.++..++.|.+.+++.+++|+|+++.+|++
T Consensus 310 ~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~ 384 (438)
T PRK10655 310 KIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKA 384 (438)
T ss_pred HHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchh
Confidence 9999999 6799999999999887665543 258899999999999999999999999888876544443
|
|
| >TIGR00909 2A0306 amino acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-52 Score=444.58 Aligned_cols=425 Identities=33% Similarity=0.562 Sum_probs=371.6
Q ss_pred cccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhCh
Q 007398 70 MKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGD 149 (605)
Q Consensus 70 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 149 (605)
++|++|.++.+++.++.++|+|++..++..... +|+..+++|++++++.++.+++++|+++++|++||.|+|+++.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~-~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGK-AGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 579999999999999999999999999988766 7888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhh
Q 007398 150 FVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNK---QPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSS 226 (605)
Q Consensus 150 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 226 (605)
..|+++||.+++.+....+..+..+++++..+++. +.+.+... .+.......+..++++++++.+|++|+|..+
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~ 156 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTA---KPGNGGVFNLPALLIVLFLTYILYLGAKESG 156 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhc---CCcccccccHHHHHHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999887752 11111100 0000011124567788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHHH
Q 007398 227 RFNYIASIIHVIVILFIIIGGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSM 306 (605)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~ 306 (605)
|++.++..++++.++++++.++.+.+.+++.++.+.++.++..++...+|+|.|+|.+.+++||+|||+|++||+++.++
T Consensus 157 ~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~ 236 (429)
T TIGR00909 157 KVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSL 236 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHH
Confidence 99999999999988877777777666667776667778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCch
Q 007398 307 AVTTLAYCLLAIALCLMQPYYAIN-VDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPP 385 (605)
Q Consensus 307 ~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP~ 385 (605)
.++.++|++..++.....|.+++. .+.|+.++.+..+++++..++.+..+++.+++.++.+.+.||+++++||||.+|+
T Consensus 237 ~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~ 316 (429)
T TIGR00909 237 IVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPG 316 (429)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 999999999999988888877764 4568888888888889999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhHHHHHHHHH
Q 007398 386 WLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLI 465 (605)
Q Consensus 386 ~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 465 (605)
+|+|+|||+++|++|+++++++++++.....++.+.++.+...++.|.+.+++.+++|+|+|+
T Consensus 317 ~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~----------------- 379 (429)
T TIGR00909 317 SLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPD----------------- 379 (429)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----------------
Confidence 999999999999999999999998887778899999999999999999999999998877543
Q ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHHHhcCChhhHHHHH
Q 007398 466 LISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARFG 545 (605)
Q Consensus 466 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (605)
.+++||.|..|+.+.+.+..+.++....++..+....
T Consensus 380 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (429)
T TIGR00909 380 -------------------------------------------IQRAFRCPLVPVLPVLVVSYCIYLLLNLGPGTTVWFL 416 (429)
T ss_pred -------------------------------------------CCCCCCCCcchHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 2345777888888888888888888888888888999
Q ss_pred HHHHHHHHHHHHH
Q 007398 546 VWTVILLLYYIFF 558 (605)
Q Consensus 546 ~~~~i~~~~y~~~ 558 (605)
+|.++|.++|..|
T Consensus 417 ~~~~~g~~~y~~~ 429 (429)
T TIGR00909 417 VWMLLGSVFYFIY 429 (429)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999654
|
|
| >TIGR01773 GABAperm gamma-aminobutyrate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=447.36 Aligned_cols=367 Identities=22% Similarity=0.300 Sum_probs=316.4
Q ss_pred ccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhh
Q 007398 67 EHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVE 146 (605)
Q Consensus 67 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 146 (605)
+.++||+|+.+|+.+++++.++|+|+|..++..... +||..+++|++++++.++.+++++|+++++|++||.|.|+++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIAS-AGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 456899999999999999999999999999999877 8998888999999999999999999999999999999999999
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhh
Q 007398 147 LGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSS 226 (605)
Q Consensus 147 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 226 (605)
+||.+||++||.++++|+...+......+.+++.+++.. + ...++++++++++.+|++|+|..+
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---------------~~~~~~~~~~~~~~~n~~gv~~~~ 149 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDI-P---------------LWLFSLILTIVLTLTNLYSVKSYG 149 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-c---------------HHHHHHHHHHHHHHHHHHhcchhh
Confidence 999999999999999999999998888888888765321 1 226777888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc---c----cc---CCC---CccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcC
Q 007398 227 RFNYIASIIHVIVILFIIIGGFAN---A----DT---KNY---KAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKN 293 (605)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~i~~~~~---~----~~---~~~---~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~ 293 (605)
+++++++++|++.++.+++.++.. . +. .++ .++.|+++.+++.++..++|+|.|+|.+++++||+||
T Consensus 150 ~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~ 229 (452)
T TIGR01773 150 EFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSN 229 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcC
Confidence 999999999998877666655421 1 11 111 1244567778999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccC--CCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007398 294 PAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAIN--VDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQA 371 (605)
Q Consensus 294 p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~--~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 371 (605)
|+||+|||+..+...+.++|++.........|.++.. ++.|+.++.+..++++...++.+..+++.+++.++.+++.|
T Consensus 230 P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~s 309 (452)
T TIGR01773 230 PIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTS 309 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888777777766543 23488888888888888888899999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007398 372 RYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF------TKLNVLSNLLSISTLFIFMLVAVALLVRRYY 445 (605)
Q Consensus 372 R~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~ 445 (605)
|++|+|||||.+|++|+|+| |+++|++|++++.+++++..++ ..++.+.++.+...++.|.+.+++.+++|++
T Consensus 310 R~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~ 388 (452)
T TIGR01773 310 RMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKK 388 (452)
T ss_pred HHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 7899999999998888765544 2367788888888899999999999988887
Q ss_pred cCCCcc
Q 007398 446 VSGVTT 451 (605)
Q Consensus 446 ~~~~~~ 451 (605)
.+++++
T Consensus 389 ~~~~~~ 394 (452)
T TIGR01773 389 LKANGE 394 (452)
T ss_pred HHhcCC
Confidence 665444
|
GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity. |
| >PRK10238 aromatic amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=445.19 Aligned_cols=366 Identities=23% Similarity=0.328 Sum_probs=317.9
Q ss_pred cccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhh
Q 007398 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRV 145 (605)
Q Consensus 66 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 145 (605)
.++++||+++.+++.+++++.++|+|+|..++..... +||..+++|++++++.++.+++++|+++++|.+||.|+|+++
T Consensus 6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~ 84 (456)
T PRK10238 6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQS-AGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYK 84 (456)
T ss_pred cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4456899999999999999999999999999999887 899999999999999999999999999999999999999999
Q ss_pred hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhh
Q 007398 146 ELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGS 225 (605)
Q Consensus 146 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 225 (605)
.+||..||++||.++++|....+.....++++++..++. .+. .....+++++++.+|++|+|..
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~---------------~~~~~i~~~~~~~lN~~gv~~~ 148 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-IPT---------------WVSAAVFFVVINAINLTNVKVF 148 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CcH---------------HHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999988888888766532 122 2456666778899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh---cc--c----cCC---CCccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcC
Q 007398 226 SRFNYIASIIHVIVILFIIIGGFA---NA--D----TKN---YKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKN 293 (605)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~i~~~~---~~--~----~~~---~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~ 293 (605)
++++.+++.+|++.++++++.++. .. . ..+ ..++.|+++.++..++..+.|+|.|+|.+++++||+||
T Consensus 149 ~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~kn 228 (456)
T PRK10238 149 GEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADN 228 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcC
Confidence 999999999999887665554322 11 0 111 12344667777888888899999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 007398 294 PAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAIN-VDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQAR 372 (605)
Q Consensus 294 p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 372 (605)
|+|++|||+..++..+.+.|+..........|.+++. .++|+.++++..+.++...++.+..+++.+++.++.+++.||
T Consensus 229 P~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR 308 (456)
T PRK10238 229 PEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSR 308 (456)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888877778888774 357999999988888888889999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007398 373 YLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF------TKLNVLSNLLSISTLFIFMLVAVALLVRRYYV 446 (605)
Q Consensus 373 ~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~ 446 (605)
++|+|||||.+|++|+|+| |+++|++|++++.+++.+..++ ..++.+.++.+.+.+++|.+++++.+++|+++
T Consensus 309 ~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~ 387 (456)
T PRK10238 309 MLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAK 387 (456)
T ss_pred HHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 6799999999999988766554 35889999999999999999999999988876
Q ss_pred CCC
Q 007398 447 SGV 449 (605)
Q Consensus 447 ~~~ 449 (605)
+++
T Consensus 388 ~~~ 390 (456)
T PRK10238 388 QEQ 390 (456)
T ss_pred Hhc
Confidence 543
|
|
| >TIGR03428 ureacarb_perm permease, urea carboxylase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=448.24 Aligned_cols=418 Identities=18% Similarity=0.271 Sum_probs=328.3
Q ss_pred HHhhhccccccccccChHHHHHHHhhhh-ccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCc
Q 007398 60 HEIKARSEHEMKKTLTWWDLIWFGIGAV-IGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGG 138 (605)
Q Consensus 60 ~~~~~~~~~~l~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG 138 (605)
++++ ++|+|||+++.++.++++++.+ ++.|++..++..... +||..+++|+++++..++.+++++|+++++|++||
T Consensus 3 ~~~g--~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~-~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG 79 (475)
T TIGR03428 3 QRFG--YQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGF-GGPAFFWTWPVVFVGQLLVALNFAELAARYPISGA 79 (475)
T ss_pred hhcC--CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 3445 8899999999999999999986 789999999999877 89999999999999999999999999999999999
Q ss_pred hhhhhhhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-CCcchhhccCCCCCcCchhHHHHHHHHH
Q 007398 139 SFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNK----Q-PEDFRIIVHSMPEDYGQLDPIAVGVSAV 213 (605)
Q Consensus 139 ~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (605)
.|+|+++.+||.+||++||.+++++....+........++...+.. . .+.+.. +.......+++.+++++
T Consensus 80 ~Y~~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 154 (475)
T TIGR03428 80 IYQWSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTS-----PSGAANAVLLGSVLLVL 154 (475)
T ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccC-----CCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999877776666665555433210 0 011100 00001133677778888
Q ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhccccCC---CC----ccCCCChhHHHHHHHHHHHHhhhhhhHhh
Q 007398 214 ICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFANADTKN---YK----AFAPFGTRGVFKASAVLFFAYIGFDAVST 286 (605)
Q Consensus 214 ~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~---~~----~~~~~g~~~~~~~~~~~~~~~~G~e~~~~ 286 (605)
++.+|++|+|..++++++..+++++.++++++.++.+.+.++ +. +..+.....++.+....+|+|.|+|.+++
T Consensus 155 ~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 234 (475)
T TIGR03428 155 TTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGE 234 (475)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHH
Confidence 999999999999999999999998877776666654433211 11 11111134566788888999999999999
Q ss_pred hhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccc--cCCCChHHHHHH-HhChhHHHHHHHHHHHHHHHHHH
Q 007398 287 MAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYA--INVDAPFSVAFE-AVGWDWAKYVVAFGALKGMTTVL 363 (605)
Q Consensus 287 ~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~--~~~~~p~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~ 363 (605)
++||+|||+||+|||+..++.++.++|.+..++.....++.+ ...+++...++. ..+.++.. .+....+++.+++.
T Consensus 235 ~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~~~i~~~~~~ 313 (475)
T TIGR03428 235 LSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVDVAIAILVCT 313 (475)
T ss_pred HHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHHHHHHHHHHH
Confidence 999999999999999999999999888888877766555321 112222333333 45555544 44455677888999
Q ss_pred HHHhhhhhHHHHHHHhcCCCc--hhhhhhcCCCcchhHHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHH
Q 007398 364 LVSAVGQARYLTHIARTHMMP--PWLAQVHGKTGTPVNATIVMLTATAIIAFF-----TKLNVLSNLLSISTLFIFMLVA 436 (605)
Q Consensus 364 ~~~~~~~sR~l~a~Ardg~lP--~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~y~~~~ 436 (605)
++.+.+.||++|++||||.+| ++|+|+|||+++|++|+++.++++.++.++ ..|+.+.++.+...+++|.++.
T Consensus 314 ~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~ 393 (475)
T TIGR03428 314 LAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVT 393 (475)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 589999999999999999999998777665 3678999999999999999999
Q ss_pred HHHHHHhhhc-C---CCccccchhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCC
Q 007398 437 VALLVRRYYV-S---GVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQAR 508 (605)
Q Consensus 437 ~~~~~~r~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (605)
++.+++|+|. | ++.++.+ |++||+|+ ++|+++++|.++..+++++|+..+
T Consensus 394 ~~~l~~~~~~~~~~~~~~~~g~---------------------f~lg~~g~-~vn~~a~~~~~~~~v~~~~P~~~~ 447 (475)
T TIGR03428 394 VPLLLRRLRGWPRGDQTDPAGL---------------------FSLGRWGL-PVNILAVVYGALMVVNLSWPRPEV 447 (475)
T ss_pred HHHHHHHHhccCCccCCCCCCC---------------------CCCchhHH-HHHHHHHHHHHHHHHHHHCCCCCC
Confidence 8888776653 1 1112222 88999888 999999999999999999998633
|
A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon. |
| >PRK10836 lysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=449.90 Aligned_cols=401 Identities=19% Similarity=0.239 Sum_probs=329.4
Q ss_pred cccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhh
Q 007398 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLR 144 (605)
Q Consensus 66 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 144 (605)
+++++||+++.++++++++|.++|+|+|..++..+.. +||. .+++|+++++++++.+++|+|+++++|++||.|.|++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~-aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~ 87 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQ-AGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQ 87 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 4567899999999999999999999999999999887 8996 8999999999999999999999999999999999999
Q ss_pred hhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchh
Q 007398 145 VELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKG 224 (605)
Q Consensus 145 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 224 (605)
+.+||.+|+++||.+++.+....+........++...++. .+. .....+++++++.+|++|+|.
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~lN~~gv~~ 151 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD-TPG---------------WIWSALFLGVIFLLNYISVRG 151 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-Cch---------------HHHHHHHHHHHHHHHHHcchh
Confidence 9999999999999999988776665444444444433221 111 134566677788999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhc------cc----cCCCC---ccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhh
Q 007398 225 SSRFNYIASIIHVIVILFIIIGGFAN------AD----TKNYK---AFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEET 291 (605)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~~i~~~~~------~~----~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 291 (605)
.+++|.++++.|++.++.+++.++.. .+ .+|+. +..+.++.+++.+....+|+|.|+|.+++++||+
T Consensus 152 ~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 231 (489)
T PRK10836 152 FGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES 231 (489)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh
Confidence 99999999999998876665544321 11 11221 1113356666666666789999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccC---------CCChHHHHHHHhChhHHHHHHHHHHHHHHHHH
Q 007398 292 KNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAIN---------VDAPFSVAFEAVGWDWAKYVVAFGALKGMTTV 362 (605)
Q Consensus 292 k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~---------~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 362 (605)
|||+||+|||+..++..+.++|++...++...+|.++.. .++|+..+++..+.++...++.+..+++.+++
T Consensus 232 knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~ 311 (489)
T PRK10836 232 EDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSA 311 (489)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888865421 24688889988888888889999999999999
Q ss_pred HHHHhhhhhHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHhh------cHHHHHHHHHHHHHHHHHHHH
Q 007398 363 LLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFT------KLNVLSNLLSISTLFIFMLVA 436 (605)
Q Consensus 363 ~~~~~~~~sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~y~~~~ 436 (605)
.|+.+++.||++|+|||||.+|++|+|+| |+++|++|++++.+++++..+.. .++.+.++.++..++.|++.+
T Consensus 312 ~n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~ 390 (489)
T PRK10836 312 GNSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIA 390 (489)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 67999999999999887665542 367788999999999999999
Q ss_pred HHHHHHhhhcCCCccccchhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 007398 437 VALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVP 516 (605)
Q Consensus 437 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (605)
++.+++|++.+++.+ +.+++|||.|
T Consensus 391 ~a~l~~R~~~~~~~~-------------------------------------------------------~~~~~p~~~p 415 (489)
T PRK10836 391 ISHYRFRRGYVLQGH-------------------------------------------------------DLNDLPYRSG 415 (489)
T ss_pred HHHHHHHHHHHhcCC-------------------------------------------------------CcCCCCCcCC
Confidence 999988876433211 1123689999
Q ss_pred cccHHHHHHHHHHHHHHhcCChh
Q 007398 517 LVPWLPSASIAINIFLLGSIDRA 539 (605)
Q Consensus 517 ~~p~~~~~~~~~~~~~~~~~~~~ 539 (605)
.+|+.|+++++.+++++..+.+.
T Consensus 416 ~~p~~~~~~~~~~~~~~~~~~~~ 438 (489)
T PRK10836 416 FFPLGPIFAFVLCLIITLGQNYE 438 (489)
T ss_pred CccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988865443
|
|
| >PRK10580 proY putative proline-specific permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=442.68 Aligned_cols=365 Identities=21% Similarity=0.401 Sum_probs=310.9
Q ss_pred cccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhh
Q 007398 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRV 145 (605)
Q Consensus 66 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 145 (605)
+++++||+++.+++++++++.++|+|+|..++..... +||..+++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~-aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~ 81 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKM-AGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQE 81 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3467899999999999999999999999999998876 899999999999999999999999999999999999999999
Q ss_pred hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhh
Q 007398 146 ELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGS 225 (605)
Q Consensus 146 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 225 (605)
.+||..||++||.+++.+....+.....++.++..+++.. +. ..+.++++++.+.+|++|+|..
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~l~~~ln~~gv~~~ 145 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV-PH---------------WIWVLSVVLIICAVNLMSVKVF 145 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-Ch---------------HHHHHHHHHHHHHHHHccchhH
Confidence 9999999999999999998877777777788877654321 11 1345666778889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh-------cc-ccC---C-C--CccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhh
Q 007398 226 SRFNYIASIIHVIVILFIIIGGFA-------NA-DTK---N-Y--KAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEET 291 (605)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~i~~~~-------~~-~~~---~-~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 291 (605)
+++|.+++.+|++.++++++.++. .. +.. + + .++.+.++.+++.++..++|+|.|+|.+++++||+
T Consensus 146 ~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~ 225 (457)
T PRK10580 146 GELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA 225 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 999999999999887766554421 11 111 1 1 12345667788899999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007398 292 KNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAIN-VDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQ 370 (605)
Q Consensus 292 k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (605)
|||+||+|||++.+++++.++|++...+.....|.+++. .++|+..+++..|.++...++.+..+.+.+++.++.+++.
T Consensus 226 knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (457)
T PRK10580 226 KDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGV 305 (457)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888888888775 3578888888888888888888888899999999999999
Q ss_pred hHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007398 371 ARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF------TKLNVLSNLLSISTLFIFMLVAVALLVRRY 444 (605)
Q Consensus 371 sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~ 444 (605)
||++++|||||.+|++|+|+| |+++|++|++++.++.++..++ ..++.+.++.++..+++|.+.+++.+++|+
T Consensus 306 sR~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~ 384 (457)
T PRK10580 306 GRMLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRR 384 (457)
T ss_pred HHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 6799999999997755443222 247789999999999999999999999988
Q ss_pred hcCC
Q 007398 445 YVSG 448 (605)
Q Consensus 445 ~~~~ 448 (605)
++++
T Consensus 385 ~~~~ 388 (457)
T PRK10580 385 RLPP 388 (457)
T ss_pred HHHh
Confidence 7543
|
|
| >PRK11049 D-alanine/D-serine/glycine permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=442.13 Aligned_cols=366 Identities=19% Similarity=0.329 Sum_probs=315.2
Q ss_pred ccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhh
Q 007398 67 EHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVE 146 (605)
Q Consensus 67 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 146 (605)
++++||+++.+++.++++|.++|+|+|..++..+.. +||+.+++|++++++.++.+++++|+++..|..|+.|.|+++.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~-aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISL-AGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 345899999999999999999999999999999877 8998899999999999999999999999999999999999999
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhh
Q 007398 147 LGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSS 226 (605)
Q Consensus 147 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 226 (605)
+||..||++||.+++++....+..+...+.|+..+++.. +. ..++.+++++++.+|++|+|..+
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~-~~---------------~~~~~~~~~~~~~iN~~g~~~~~ 157 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL-SD---------------WVASLAVVLLLLSLNLATVKMFG 157 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cH---------------HHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999998777777777888887665421 11 14556677788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc------cc---CCC------CccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhh
Q 007398 227 RFNYIASIIHVIVILFIIIGGFANA------DT---KNY------KAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEET 291 (605)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~i~~~~~~------~~---~~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 291 (605)
++|++.+.+|++.++.+++.++... +. .++ .++.|+++.+++.++...+|+|.|+|.+++++||+
T Consensus 158 ~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~ 237 (469)
T PRK11049 158 EMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET 237 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Confidence 9999999999998888777766421 00 111 13446677789999999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007398 292 KNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINV-DAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQ 370 (605)
Q Consensus 292 k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (605)
|||+||+||++..+.+.+.++|++...+.....|.+++.. ++|+.+.++..+.++...++.+..+++.+++.++.+++.
T Consensus 238 knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~ 317 (469)
T PRK11049 238 KDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFST 317 (469)
T ss_pred cCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888899999999999888888887744 579999988888888888999999999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHH---HHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007398 371 ARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAII---AFF-----TKLNVLSNLLSISTLFIFMLVAVALLVR 442 (605)
Q Consensus 371 sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~---~~~-----~~~~~l~~~~~~~~~~~y~~~~~~~~~~ 442 (605)
||++|+|||||.+|++|+|+| |+++|++|+++++++..+. ... ..++.+.++.++...+.|.+.+++.+++
T Consensus 318 sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~l 396 (469)
T PRK11049 318 SRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVY 396 (469)
T ss_pred HHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 5699999999987765431 112 2578888999999999999999999999
Q ss_pred hhhcCCCc
Q 007398 443 RYYVSGVT 450 (605)
Q Consensus 443 r~~~~~~~ 450 (605)
|+++|+.+
T Consensus 397 r~~~p~~~ 404 (469)
T PRK11049 397 RKQRPHLH 404 (469)
T ss_pred HHhhhhcC
Confidence 98876643
|
|
| >TIGR00907 2A0304 amino acid permease (GABA permease) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-51 Score=442.21 Aligned_cols=444 Identities=17% Similarity=0.261 Sum_probs=346.2
Q ss_pred cccccccccChHHHHHHHhhhhc-cchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhh
Q 007398 66 SEHEMKKTLTWWDLIWFGIGAVI-GAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYL 143 (605)
Q Consensus 66 ~~~~l~r~l~~~~~~~~~~~~~i-g~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~ 143 (605)
+++++||+++.++.++++++.+. ..|++...+..... +||. .+++|++++++.++.+++++||++++|++||.|+|+
T Consensus 6 ~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~ 84 (482)
T TIGR00907 6 YKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSS-GGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWS 84 (482)
T ss_pred CcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 78889999999999999999663 36788777766555 8885 899999999999999999999999999999999999
Q ss_pred hhhhC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--chhhccCCCCCcCchhHHHHHHHHHHHHH
Q 007398 144 RVELG----DFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPED--FRIIVHSMPEDYGQLDPIAVGVSAVICIL 217 (605)
Q Consensus 144 ~~~~g----~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (605)
++.+| +..||++||.+++++....+......+.++...+....+. +. +. .....++.++++++++.+
T Consensus 85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~i~~~~~~~~~~i 157 (482)
T TIGR00907 85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYI------PT-RWHIFGIMIGIHLIHALI 157 (482)
T ss_pred HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc------cc-CchhhhhHHHHHHHHHHH
Confidence 99876 6779999999999999999988888888887654321111 10 00 011235677778889999
Q ss_pred HHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhcccc---------CCCC----ccCCCChhHHHHHHHHHHHHhhhhhhH
Q 007398 218 AVVSTKGSSRFNYIASIIHVIVILFIIIGGFANADT---------KNYK----AFAPFGTRGVFKASAVLFFAYIGFDAV 284 (605)
Q Consensus 218 ~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~---------~~~~----~~~~~g~~~~~~~~~~~~~~~~G~e~~ 284 (605)
|++|.|..++++++..+++++.++++.+..+...+. +++. ++.+.++ +++.++..+.|+|.|+|.+
T Consensus 158 n~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~~ 236 (482)
T TIGR00907 158 NSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDGT 236 (482)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcchh
Confidence 999999999999999988888776555444432211 1111 1223333 4667777888999999999
Q ss_pred hhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhccc-cccc-C--CCChHHHHHHH-hChhHHHHHHHHHHHHHH
Q 007398 285 STMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQP-YYAI-N--VDAPFSVAFEA-VGWDWAKYVVAFGALKGM 359 (605)
Q Consensus 285 ~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~-~~~~-~--~~~p~~~~~~~-~g~~~~~~~~~~~~~~~~ 359 (605)
++++||+|||+||+|||++.++.+..+++++..+......+ .+++ + .++|+.+++.. .|.++...++.+..+++.
T Consensus 237 ~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~ 316 (482)
T TIGR00907 237 AHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTS 316 (482)
T ss_pred hHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999888776666555544443 2222 2 23588888774 566677777888888999
Q ss_pred HHHHHHHhhhhhHHHHHHHhcCCCc--hhhhhhcCCCcchhHHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHH
Q 007398 360 TTVLLVSAVGQARYLTHIARTHMMP--PWLAQVHGKTGTPVNATIVMLTATAIIAFF-----TKLNVLSNLLSISTLFIF 432 (605)
Q Consensus 360 ~~~~~~~~~~~sR~l~a~Ardg~lP--~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~y 432 (605)
+++.++.+++.||++|+|||||.+| ++|+|+|||+++|++|++++.+++.++.++ ..++.+.++.+...++.|
T Consensus 317 ~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y 396 (482)
T TIGR00907 317 FFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSY 396 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999998999999999999988776655 368999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCccccchhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCCCCCc
Q 007398 433 MLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKL 512 (605)
Q Consensus 433 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (605)
.+++++.+++|++ ++++|| |.++++++ ..+.++++|..+..++.++|+..+.+
T Consensus 397 ~~~~~~~l~~~~~-~~~~~~-----------------------f~lg~~~~-~~~~~~~~~~~~~~v~~~~P~~~p~~-- 449 (482)
T TIGR00907 397 VIPIICKLAKGRN-TIAPGP-----------------------FWLGKYGF-FVNAVAVAWTVFSSVLFSFPPVLPVT-- 449 (482)
T ss_pred HHHHHHHHHhcCC-CCCCCC-----------------------CcCCcchH-HHHHHHHHHHHHHHhheeCCCCCCCC--
Confidence 9988877654444 344443 34455554 78888999999999999999863221
Q ss_pred cccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 007398 513 WGVPLVPWLPSASIAINIFLLGSIDRASFARFGVWTVILLLYYIFFGLHASYDTA 567 (605)
Q Consensus 513 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~ 567 (605)
+ .+|||.. ++++++++++.++|+.++||+ +++|
T Consensus 450 ---------~-----------~~~ny~~-~~~~~~~~~~~~~~~~~~r~~-~~gp 482 (482)
T TIGR00907 450 ---------P-----------ENMNYAV-VVFAGVLAISLVYWKYKGRKE-FTGP 482 (482)
T ss_pred ---------c-----------ccCChHh-HHHHHHHHHHHHHheEeceee-ccCc
Confidence 1 3667754 556888889999998888887 7765
|
|
| >PRK10435 cadB lysine/cadaverine antiporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-51 Score=432.80 Aligned_cols=358 Identities=17% Similarity=0.262 Sum_probs=305.1
Q ss_pred cccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhCh
Q 007398 70 MKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGD 149 (605)
Q Consensus 70 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 149 (605)
.+|+++.++++++.++.++|+|+|..++..+ . +|+..+++|+++++.+++.+++++|+++++|++||.|+|+++ +||
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~-~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLA-S-IGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 5789999999999999999999999999864 4 688899999999999999999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHH
Q 007398 150 FVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFN 229 (605)
Q Consensus 150 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 229 (605)
.+||.+||.+|................|+...++...+.+. ..+++++++++++.+|.+|+|..++++
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~------------~~~~~~~i~~~~~~ln~~gvk~~~~i~ 147 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIP------------AGIACIAIVWVFTFVNMLGGTWVSRLT 147 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHH------------HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999876666666667777888776643211111 225566777788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccC----CCCccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHH
Q 007398 230 YIASIIHVIVILFIIIGGFANADTK----NYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGS 305 (605)
Q Consensus 230 ~~~~~~~l~~~~~~~i~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~ 305 (605)
.+..+++++.++.+.+.++.+.+.+ ++.+..+.++.+++.++..++|+|.|+|.+++++||+|||+||+|||+..+
T Consensus 148 ~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~ 227 (435)
T PRK10435 148 TIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLG 227 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHH
Confidence 9999888877766666665444332 222222345678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccc-CCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCc
Q 007398 306 MAVTTLAYCLLAIALCLMQPYYAI-NVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMP 384 (605)
Q Consensus 306 ~~~~~v~y~l~~~~~~~~~~~~~~-~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP 384 (605)
+.++.++|++..++.....|.+++ ..++|+.++++..++++...++.+..+++.+++.++.++..+|..+++||||.+|
T Consensus 228 ~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP 307 (435)
T PRK10435 228 TGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFP 307 (435)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999998887 4568999999888888888888888899999999999999999999999999999
Q ss_pred hhhhhhcCCCcchhHHHHHHHHHHHHHHH----h--------hcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007398 385 PWLAQVHGKTGTPVNATIVMLTATAIIAF----F--------TKLNVLSNLLSISTLFIFMLVAVALLVRR 443 (605)
Q Consensus 385 ~~f~~~~~r~~~P~~ai~~~~~~~~~~~~----~--------~~~~~l~~~~~~~~~~~y~~~~~~~~~~r 443 (605)
|+|+|+| |+|+|++|++++++++.++.. + ..++.+.++.+...++.|++.+++.+++|
T Consensus 308 ~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~ 377 (435)
T PRK10435 308 KVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFE 377 (435)
T ss_pred HHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999 789999999998877654332 1 25788999999999999999999988543
|
|
| >COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=409.59 Aligned_cols=421 Identities=23% Similarity=0.368 Sum_probs=369.4
Q ss_pred cccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhh
Q 007398 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRV 145 (605)
Q Consensus 66 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 145 (605)
++++++|.|+.+|..++++|..||+|+|...+..... +||+.+++++++|++.+.+.-.++||..+-|++|+..+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~-AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAM-AGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhh-hCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 4567999999999999999999999999999999887 999999999999999999999999999999999999999999
Q ss_pred hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhh
Q 007398 146 ELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGS 225 (605)
Q Consensus 146 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 225 (605)
.+||+.||++||.||+.|+....+...+.+.|++.+++.. +.| +.+.+++++...+|+.++|..
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-P~W---------------v~al~~~~l~~~~NL~sVk~F 149 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-PQW---------------VFALAAVVLLLAVNLISVKVF 149 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cHH---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998654 344 778888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc--c---------ccCCC---CccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhh
Q 007398 226 SRFNYIASIIHVIVILFIIIGGFAN--A---------DTKNY---KAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEET 291 (605)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~i~~~~~--~---------~~~~~---~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 291 (605)
+..+..+..+|+..++.+++.|+.. . +.+|. .+++|+|+.|++.++..++|+|.|.|.....+.|.
T Consensus 150 GE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et 229 (462)
T COG1113 150 GELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA 229 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 9999999999999998888876541 1 12222 37899999999999999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007398 292 KNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINV-DAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQ 370 (605)
Q Consensus 292 k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (605)
|||+|++|||+-.....+.++|+....++....|++++++ ++|+...++..|.++...++++..+.+.++++|+.+++.
T Consensus 230 ~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglyst 309 (462)
T COG1113 230 KDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYST 309 (462)
T ss_pred cChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhccccccccc
Confidence 9999999999999999999999999999999999998865 579999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007398 371 ARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF------TKLNVLSNLLSISTLFIFMLVAVALLVRRY 444 (605)
Q Consensus 371 sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~ 444 (605)
+|++|++|+||..||.|+|+| |+++|++|++++++...+-.++ ..|+.+.+..+.+.+..|++..++.+++|+
T Consensus 310 sRmL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 310 SRMLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred chHHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 8899999999988776544433 368999999999999999999999999998
Q ss_pred hcCCCccccchhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHH
Q 007398 445 YVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSA 524 (605)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 524 (605)
+++++ .++..||+|..|+..++
T Consensus 389 ~~~~~----------------------------------------------------------~~~~~fkm~~~p~~~~l 410 (462)
T COG1113 389 AKPAE----------------------------------------------------------GKKLKFKMPLYPFTNYL 410 (462)
T ss_pred cchhc----------------------------------------------------------ccCcccccccccHHHHH
Confidence 54432 33445888888888888
Q ss_pred HHHHHHHHHhcC-----ChhhHHHHHHHHHHHHHHHHHHhhcc
Q 007398 525 SIAINIFLLGSI-----DRASFARFGVWTVILLLYYIFFGLHA 562 (605)
Q Consensus 525 ~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~y~~~~~~~ 562 (605)
+++.-++.+..| .........+|+++-.+.|..+++|+
T Consensus 411 ~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~~ 453 (462)
T COG1113 411 TLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKK 453 (462)
T ss_pred HHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 777766665544 11234555567666666666655544
|
|
| >TIGR00911 2A0308 L-type amino acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=437.56 Aligned_cols=377 Identities=23% Similarity=0.323 Sum_probs=310.8
Q ss_pred cccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCc-h-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhh
Q 007398 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGP-A-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYL 143 (605)
Q Consensus 66 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~ 143 (605)
++++++|+++.+++++++++.++|+|+|..++..+.. +|+ + .+++|++++++.++.+++++|+++++|++||.|+|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~-~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKN-AGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 5567999999999999999999999999999988776 666 3 568999999999999999999999999999999999
Q ss_pred hhhhChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhcC-CCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHh
Q 007398 144 RVELGDFVAFVAAGNILL-EYVIGGAAVARSWTSYFAT-LCNK-QPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVV 220 (605)
Q Consensus 144 ~~~~g~~~g~~~g~~~~~-~~~~~~a~~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 220 (605)
++.+||..||+++|..++ .+....+..+..++.|+.. .++. ..+.|. ..+++++++++++.+|++
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~------------~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWA------------IRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHH------------HHHHHHHHHHHHHHHHHh
Confidence 999999999999998765 3345566666777777644 2321 122222 236778888899999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhcccc---CCC--C-ccC--CCChhHHHHHHHHHHHHhhhhhhHhhhhhhhc
Q 007398 221 STKGSSRFNYIASIIHVIVILFIIIGGFANADT---KNY--K-AFA--PFGTRGVFKASAVLFFAYIGFDAVSTMAEETK 292 (605)
Q Consensus 221 g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~---~~~--~-~~~--~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k 292 (605)
|+|..+|++.+++.++++.++++++.++..... .+. . .+. +.++.++..++..++|+|.|+|.+++++||+|
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~k 262 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVK 262 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhc
Confidence 999999999999999999888777776553211 111 1 111 13456788899999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007398 293 NPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVA-FEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQA 371 (605)
Q Consensus 293 ~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 371 (605)
||+|++|||+..++.++.++|++..+++....|.+++..+.+.... .+...+ ....++.+...++.+++.++.+.+.|
T Consensus 263 nP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~s 341 (501)
T TIGR00911 263 NPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSS 341 (501)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888888877554433333 333322 45567778888899999999999999
Q ss_pred HHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 007398 372 RYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTT 451 (605)
Q Consensus 372 R~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~ 451 (605)
|++++|||||.+|++|+|+|+|+++|++|++++++++++....+++..+.++.+...++.|.+.+++++++|+|+|+.+|
T Consensus 342 R~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~r 421 (501)
T TIGR00911 342 RLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNR 421 (501)
T ss_pred HHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCC
Confidence 99999999999999999999999999999999998887777677777788888899999999999999999999888777
Q ss_pred ccchh
Q 007398 452 TANQV 456 (605)
Q Consensus 452 ~~~~~ 456 (605)
|+|..
T Consensus 422 p~r~p 426 (501)
T TIGR00911 422 PIKVP 426 (501)
T ss_pred CccCc
Confidence 76543
|
|
| >TIGR00913 2A0310 amino acid permease (yeast) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-50 Score=433.18 Aligned_cols=360 Identities=21% Similarity=0.261 Sum_probs=302.1
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhcccc-CCchhhhhhhhhC
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPV-AGGSFAYLRVELG 148 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~-~GG~y~~~~~~~g 148 (605)
||+++.+|+.+++++.++|+|+|..++..... +||. .+++|+++++++++.+++++|+++++|+ .||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~-~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALAT-GGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 58899999999999999999999999999887 8886 7899999999999999999999999995 5567789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHH
Q 007398 149 DFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRF 228 (605)
Q Consensus 149 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 228 (605)
|.+||++||.++++|+...+......+.++....+.. +. ..+..+++++++.+|++|+|..+++
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~~~~~in~~gv~~~~~~ 143 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKV-NP---------------AVWIAIFYVFIVIINLFGVKGYGEA 143 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CH---------------HHHHHHHHHHHHHHHHhcchHHHHH
Confidence 9999999999999999999999888888887543211 11 1233455667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc--ccc--------C---CCCccCCC----ChhHHHHHHHHHHHHhhhhhhHhhhhhhh
Q 007398 229 NYIASIIHVIVILFIIIGGFAN--ADT--------K---NYKAFAPF----GTRGVFKASAVLFFAYIGFDAVSTMAEET 291 (605)
Q Consensus 229 ~~~~~~~~l~~~~~~~i~~~~~--~~~--------~---~~~~~~~~----g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 291 (605)
|++++.+|++.++.+++.++.. .+. . +..++.+. .+.++..++..++|+|.|+|.+++++||+
T Consensus 144 ~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~ 223 (478)
T TIGR00913 144 EFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA 223 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh
Confidence 9999999988776666554331 111 0 11123222 25678889999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccc--c-C-------CCChHHHHHHHhChhHHHHHHHHHHHHHHHH
Q 007398 292 KNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYA--I-N-------VDAPFSVAFEAVGWDWAKYVVAFGALKGMTT 361 (605)
Q Consensus 292 k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~--~-~-------~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 361 (605)
|||+||+|||++.++.++.++|++..+++....|.++ + + .++|+...++..+.++...++.+..+++.++
T Consensus 224 knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~ 303 (478)
T TIGR00913 224 ANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLS 303 (478)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999888777777654 2 1 1368887778888888888999999999999
Q ss_pred HHHHHhhhhhHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHH
Q 007398 362 VLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF------TKLNVLSNLLSISTLFIFMLV 435 (605)
Q Consensus 362 ~~~~~~~~~sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~y~~~ 435 (605)
+.++.+++.||++|+|||||.+|++|+|+| |+++|++|++++++++++..+. ..++.+.++.+...++.|++.
T Consensus 304 ~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~ 382 (478)
T TIGR00913 304 AANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCI 382 (478)
T ss_pred HHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 7899999999999887654332 247889999999999999999
Q ss_pred HHHHHHHhhhcCC
Q 007398 436 AVALLVRRYYVSG 448 (605)
Q Consensus 436 ~~~~~~~r~~~~~ 448 (605)
+++.+++|++.++
T Consensus 383 ~~~~i~~r~~~~~ 395 (478)
T TIGR00913 383 CLSHIRFRKAMKA 395 (478)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988876443
|
|
| >KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-52 Score=440.33 Aligned_cols=486 Identities=33% Similarity=0.498 Sum_probs=376.0
Q ss_pred cccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhcccc-CCchhhhhhhh
Q 007398 68 HEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPV-AGGSFAYLRVE 146 (605)
Q Consensus 68 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~-~GG~y~~~~~~ 146 (605)
+++||+|+.+|+.++++|.++|+|+|+..|.++...|||+.+++++++++.+++.++|++|++.++|. +||.|.|+++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 68999999999999999999999999999999998666679999999999999999999999999999 59999999999
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHH-hcchhh
Q 007398 147 LGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAV-VSTKGS 225 (605)
Q Consensus 147 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~~~ 225 (605)
.|+.+||.+||.+++.|++..++++.+.+.+++.+.+ .+.+....+..+...+..+.+++++++.++.+-. .+.|..
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~ 183 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFS 183 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--cccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeeh
Confidence 9999999999999999999999999999999999871 2222211122222222233444444444443333 677777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccCCCC---------ccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCC
Q 007398 226 SRFNYIASIIHVIVILFIIIGGFANADTKNYK---------AFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAK 296 (605)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r 296 (605)
..++++++.+.++.+.++++.|....|..|+. +|.|.++.|++.++..+.|+|.|+|..+..+||.|||+|
T Consensus 184 ~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k 263 (554)
T KOG1286|consen 184 LAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRK 263 (554)
T ss_pred HHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcc
Confidence 88888888888888877788888777765554 377788999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccccc--cCCCChHHHHHH----HhChhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007398 297 DIPIGLVGSMAVTTLAYCLLAIALCLMQPYYA--INVDAPFSVAFE----AVGWDWAKYVVAFGALKGMTTVLLVSAVGQ 370 (605)
Q Consensus 297 ~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~--~~~~~p~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (605)
++|+|+..++..+.++|++..+.+...+|+++ +.++++....+. ..+.+....+++++++++..+++|+.+++.
T Consensus 264 ~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~ 343 (554)
T KOG1286|consen 264 AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAG 343 (554)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999988 766654444444 444445556999999999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHhhc------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007398 371 ARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTK------LNVLSNLLSISTLFIFMLVAVALLVRRY 444 (605)
Q Consensus 371 sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~y~~~~~~~~~~r~ 444 (605)
||.+++||+||++||+|+++|+| |+|++|++++.+++++..+..+ |++|.++.+++.++.|.+++++.+++|+
T Consensus 344 sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 344 SRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFRY 422 (554)
T ss_pred HHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeeee
Confidence 99999999999999999999966 9999999999999988777744 5999999999999999999999999998
Q ss_pred hcCCCcc-----ccch--hHHHHHHHHHHHHHHHHHHhccccc-----ccchhhh---HHHHHHHHHHHHHHHhccCCCC
Q 007398 445 YVSGVTT-----TANQ--VKLIVCILLILISSIATAAYWGLSK-----HGWIGYC---ITVPIWFLGTLYLAVFVPQARA 509 (605)
Q Consensus 445 ~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 509 (605)
..+.+.+ +++. ..+-.....+++..+...-.|.... +..+... +...+++++.+.+..+.+....
T Consensus 423 a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~i~l~~~i~~~i~~~~~~~ 502 (554)
T KOG1286|consen 423 AMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILLAQFYVAFFPIGSEFSAWGFFEAYLGLPILLIFYIGYKIYAKPTNT 502 (554)
T ss_pred cccccCCCcccccccCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHHHHheeeccccc
Confidence 7543321 1111 1233333444444443333333321 1111111 1111122222222212111110
Q ss_pred CCccccccccHHHHHHHHHHHHHHhcCChhhHH--HHHHHHHHHHHHHHH-Hhhccc
Q 007398 510 PKLWGVPLVPWLPSASIAINIFLLGSIDRASFA--RFGVWTVILLLYYIF-FGLHAS 563 (605)
Q Consensus 510 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~y~~-~~~~~~ 563 (605)
.+|+.|.+.+..+.+++..++...+. ....|..++...|.. |+.+|.
T Consensus 503 -------~vp~~~~idl~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~ 552 (554)
T KOG1286|consen 503 -------LVPLSPCIDLDTNIYLMDSLDAETWIEERFEVWLEIGLLIYFFWYGIRHS 552 (554)
T ss_pred -------ccCCccceEEEecceeeccccchhhhhhhHHHHhhhhhHHHHHhhhhhcc
Confidence 57888888999999998888888888 888998998888877 777664
|
|
| >TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-50 Score=429.36 Aligned_cols=362 Identities=21% Similarity=0.303 Sum_probs=309.8
Q ss_pred cccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhcccc-CCchhhhhhhhh
Q 007398 70 MKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPV-AGGSFAYLRVEL 147 (605)
Q Consensus 70 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~-~GG~y~~~~~~~ 147 (605)
++|++|.+++++++++.++|+|+|..++..... +||. .+++|++++++.++.+++|+|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~-~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASV-AGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 478999999999999999999999999987765 8886 7899999999999999999999999999 999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhh
Q 007398 148 GDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQP--EDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGS 225 (605)
Q Consensus 148 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 225 (605)
||..|+++||.+++.+.......+....+++...++... ..+. ..+++++++++++.+|++|+|..
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~------------~~~~~~~~~~~~~~ln~~Gi~~~ 151 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVP------------SILGASVLLWVFTFLVLRGVRQA 151 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHH------------HHHHHHHHHHHHHHHHHhCHHHH
Confidence 999999999999999888777777777777777665211 1111 23567777788899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccCCCC-cc----C---CCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCc
Q 007398 226 SRFNYIASIIHVIVILFIIIGGFANADTKNYK-AF----A---PFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKD 297 (605)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~-~~----~---~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~ 297 (605)
+|+|++.+.++++.++++++.++...+.+++. ++ . +.++.++..++...+|+|.|+|.+++++||+|| +||
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~ 230 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSD 230 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-ccc
Confidence 99999999999998887777776543332221 11 1 123567788889999999999999999999999 999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCCh-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 007398 298 IPIGLVGSMAVTTLAYCLLAIALCLMQPYYAIN-VDAP-FSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLT 375 (605)
Q Consensus 298 vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 375 (605)
+||+++.++.++.++|++...+.....|.+++. .++| ..++.+...+++...++.+..+++.+++.++.+.+.||++|
T Consensus 231 iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~ 310 (473)
T TIGR00905 231 VGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPF 310 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888888764 4678 67777777778888889999999999999999999999999
Q ss_pred HHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007398 376 HIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF-----TKLNVLSNLLSISTLFIFMLVAVALLVRRYYV 446 (605)
Q Consensus 376 a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~ 446 (605)
+|||||.+|++|+|+|| +++|++|++++++++.++.++ ..++.+.++.++..++.|.+.+++.+++|+++
T Consensus 311 amardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 311 SAAKDGLFPKIFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHHhCCChhHHHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999995 599999999999887655443 46889999999999999999999999988775
|
This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. |
| >KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=416.77 Aligned_cols=393 Identities=21% Similarity=0.347 Sum_probs=338.6
Q ss_pred cccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCc-h-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhh
Q 007398 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGP-A-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYL 143 (605)
Q Consensus 66 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~ 143 (605)
++.+++|++|.++.+.+.+++++|+|+|..+..+... +|+ + ++..|+.++++++..++||+|+++.+|++||+|.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~-~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLAN-TGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH
Confidence 4456799999999999999999999999999999887 655 4 888999999999999999999999999999999999
Q ss_pred hhhhChhHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhcC-CCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHh
Q 007398 144 RVELGDFVAFVAAGNILL-EYVIGGAAVARSWTSY-FATLCNK-QPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVV 220 (605)
Q Consensus 144 ~~~~g~~~g~~~g~~~~~-~~~~~~a~~~~~~~~~-l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 220 (605)
.+++||.++|...|.-++ .+....+..+..+++| ++..++. ..+.+. ..+++.+++++++.+|+.
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~------------~~lla~~~l~~lt~~n~~ 152 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVA------------SKLLAAALLVLLTLINSF 152 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHH------------HHHHHHHHHHHHHHHhhh
Confidence 999999999999996555 4556669999999999 5565551 112221 448899999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhcc---ccCCCCc--c--CCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcC
Q 007398 221 STKGSSRFNYIASIIHVIVILFIIIGGFANA---DTKNYKA--F--APFGTRGVFKASAVLFFAYIGFDAVSTMAEETKN 293 (605)
Q Consensus 221 g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~---~~~~~~~--~--~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~ 293 (605)
++|+..++|.+++..|++.+.++++.|+... +.+|+.. + ...+...+..++...+|+|.|||.....+||+||
T Consensus 153 ~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEikn 232 (479)
T KOG1287|consen 153 SVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKN 232 (479)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcC
Confidence 9999999999999999999999999998743 2333221 1 1123445778899999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHH-HHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 007398 294 PAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAF-EAVGWDWAKYVVAFGALKGMTTVLLVSAVGQAR 372 (605)
Q Consensus 294 p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 372 (605)
|+||+|||+..++.+++++|++++++...+++.|++..++..+..+ +..++.+. +++.+.+.++++++.|+.+.+.||
T Consensus 233 P~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR 311 (479)
T KOG1287|consen 233 PRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSR 311 (479)
T ss_pred ccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999886655555444 46666666 899999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Q 007398 373 YLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTT 452 (605)
Q Consensus 373 ~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~ 452 (605)
+++++||+|+||+.|++.|+|..+|..++++++..+++..+.++++.+.+..++...+.+.+..++++++|+|+|+.+||
T Consensus 312 ~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 312 LFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred HHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999988
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 007398 453 ANQVKLIVCILLILISSIAT 472 (605)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~ 472 (605)
.|..-+++.+..+++..+.+
T Consensus 392 iKvpl~~p~~~~~~~i~lvv 411 (479)
T KOG1287|consen 392 IKVPLFIPILFLLICIFLVV 411 (479)
T ss_pred EeeeeehHHHHHHHHHHHhh
Confidence 88655555555555444433
|
|
| >PRK10197 gamma-aminobutyrate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=422.42 Aligned_cols=347 Identities=20% Similarity=0.290 Sum_probs=301.2
Q ss_pred HHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChhHHHHHHHHHHH
Q 007398 82 FGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILL 161 (605)
Q Consensus 82 ~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~~~g~~~~~ 161 (605)
+++|+++|+|+|..++...+. +||..+++|++++++.++.+++++|+++++|++||.|.|+++.+||.+||.+||.+++
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~-aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAE-AGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 578899999999999999887 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHH
Q 007398 162 EYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVIL 241 (605)
Q Consensus 162 ~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~ 241 (605)
.++...+.+....+.++....+.. + ...++.+++++.+.+|++|+|..+++|.+++.+|++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li 144 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWVPGI-P---------------IWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAIL 144 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhccccC-c---------------HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHH
Confidence 999888888766666665543211 0 236788888889999999999999999999999999887
Q ss_pred HHHHHhhhccc-------cCCC------CccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHHHHH
Q 007398 242 FIIIGGFANAD-------TKNY------KAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAV 308 (605)
Q Consensus 242 ~~~i~~~~~~~-------~~~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~ 308 (605)
.+++.++.... ..++ .++.|+++.++..++..++|+|.|+|..++++||+|||+||+|||+..++..
T Consensus 145 ~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~ 224 (446)
T PRK10197 145 AFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWR 224 (446)
T ss_pred HHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHH
Confidence 77766554211 0111 1344667888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccCC--CChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCchh
Q 007398 309 TTLAYCLLAIALCLMQPYYAINV--DAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPW 386 (605)
Q Consensus 309 ~~v~y~l~~~~~~~~~~~~~~~~--~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP~~ 386 (605)
+.++|++..++.....|.++.+. .+++..+.+..++++...++.+..+++.+++.|+.+++.||++|++||||.+|++
T Consensus 225 i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~ 304 (446)
T PRK10197 225 ISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAV 304 (446)
T ss_pred HHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHH
Confidence 99999999999888888876443 3567778888888888899999999999999999999999999999999999999
Q ss_pred hhhhcCCCcchhHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007398 387 LAQVHGKTGTPVNATIVMLTATAIIAFF------TKLNVLSNLLSISTLFIFMLVAVALLVRRYYV 446 (605)
Q Consensus 387 f~~~~~r~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~ 446 (605)
|+|+| |+++|++|++++++++++..+. ..++.+.++.+...++.|.+.+++.+++|++.
T Consensus 305 ~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~ 369 (446)
T PRK10197 305 MGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKIL 369 (446)
T ss_pred HHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 8899999999998877654443 25889999999999999999999999988863
|
|
| >PRK11021 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=414.18 Aligned_cols=354 Identities=19% Similarity=0.268 Sum_probs=291.6
Q ss_pred cChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChhHHH
Q 007398 74 LTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAF 153 (605)
Q Consensus 74 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~ 153 (605)
+|+++.+++.+++++|+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|++||.|.|+++.+||.+|+
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~-aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALV-AGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 58899999999999999999999998877 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 007398 154 VAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIAS 233 (605)
Q Consensus 154 ~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 233 (605)
.+||.+++.+....+........++...++.+. +. ...++++++++++.+|++|+|..+|++.+..
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~ 145 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFGWSS--WQ------------LLLAELLTLALLWLLNLRGASSSANLQTVIA 145 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC--ch------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999988776666555555667766654321 11 1256677788889999999999999999887
Q ss_pred HHHHHHHHHHHHHhhhccccCCC--CccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHHHHHHHH
Q 007398 234 IIHVIVILFIIIGGFANADTKNY--KAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTL 311 (605)
Q Consensus 234 ~~~l~~~~~~~i~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~~v 311 (605)
++.+..+..+... ...+..++ .+..+.++.++..++..++|+|.|+|.+++++||+|||+||+|||++.++.++.+
T Consensus 146 ~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~ 223 (410)
T PRK11021 146 LLIVALVVAIWWA--GDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGL 223 (410)
T ss_pred HHHHHHHHHHHHH--cCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHH
Confidence 6554433222211 11222222 2233457888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccc-CCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCchhhhhh
Q 007398 312 AYCLLAIALCLMQPYYAI-NVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQV 390 (605)
Q Consensus 312 ~y~l~~~~~~~~~~~~~~-~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP~~f~~~ 390 (605)
+|++..++.....+.++. ..+.|..++++...+++...++.+..+++.+++.++.+.+.||++|+|||||.+|++|+|+
T Consensus 224 lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~ 303 (410)
T PRK11021 224 VYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARL 303 (410)
T ss_pred HHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhh
Confidence 999999887666654443 3456777777755445566677888889999999999999999999999999999999999
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007398 391 HGKTGTPVNATIVMLTATAIIAFF-----TKLNVLSNLLSISTLFIFMLVAVALLVRRYY 445 (605)
Q Consensus 391 ~~r~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~ 445 (605)
| |+++|++|++++.+++.+..++ .+++.+.++.+...++.|.+.+++.++++++
T Consensus 304 ~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~ 362 (410)
T PRK11021 304 S-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKG 362 (410)
T ss_pred c-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9 6799999999998877655443 3788899999999999999999999887754
|
|
| >TIGR00930 2a30 K-Cl cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-48 Score=436.75 Aligned_cols=400 Identities=15% Similarity=0.154 Sum_probs=322.6
Q ss_pred cccccccChHHHHHHH-hhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhc-cccCCchhhhhh
Q 007398 68 HEMKKTLTWWDLIWFG-IGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVE-IPVAGGSFAYLR 144 (605)
Q Consensus 68 ~~l~r~l~~~~~~~~~-~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~-~P~~GG~y~~~~ 144 (605)
++-+|++|+++.+++. +++++|+|+|..++.++.+ +|.. +++.|++++++++++++||+|++++ +|++||.|.|++
T Consensus 72 ~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~-aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yis 150 (953)
T TIGR00930 72 PAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQ-AGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLIS 150 (953)
T ss_pred CCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 3456899999999888 9999999999999999987 7776 8899999999999999999999998 999999999999
Q ss_pred hhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchh
Q 007398 145 VELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKG 224 (605)
Q Consensus 145 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 224 (605)
|++||.+|+.+||.+++++.+..+.++.++++|+..+++...... . ........+++.+++++++++|++|+|.
T Consensus 151 ralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~--~----~~~~~~~~iia~i~l~ll~~In~~Gvk~ 224 (953)
T TIGR00930 151 RSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKI--M----VDPINDIRIYGTVTVVVLLGISFAGMEW 224 (953)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--c----cCccccchHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999999875321100 0 0001113378889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcccc---------------CCCCccCCCChhHHHHHHHHHHHHhhhhhhHhhhhh
Q 007398 225 SSRFNYIASIIHVIVILFIIIGGFANADT---------------KNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAE 289 (605)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~---------------~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~ 289 (605)
.+|+|.++++++++.++.+++.++..... .|+.+..+.+..++...+...+++|.|+|+.++++|
T Consensus 225 ~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sg 304 (953)
T TIGR00930 225 ENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISG 304 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887777665532111 011111122333466677777889999999999999
Q ss_pred hhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CC------------------hHH----HHHH-HhChh
Q 007398 290 ETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINV-DA------------------PFS----VAFE-AVGWD 345 (605)
Q Consensus 290 E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~-~~------------------p~~----~~~~-~~g~~ 345 (605)
|+|||+|++|||++.++++++++|++..+++..+.+.+.... +. |.. ..+. .....
T Consensus 305 ElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~ 384 (953)
T TIGR00930 305 DLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVS 384 (953)
T ss_pred hccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhh
Confidence 999999999999999999999999999988777776544321 10 110 0111 01112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCc--hhhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHH
Q 007398 346 WAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMP--PWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNL 423 (605)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP--~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~ 423 (605)
....++.++++++++++.+++++++||++++|||||.+| ++|+|+|+|+++|++|+++++++++++.++++++.+..+
T Consensus 385 ~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~l 464 (953)
T TIGR00930 385 PFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPI 464 (953)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 245788899999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccc-c-hhHHHHHHHHHHHHHHHHHH
Q 007398 424 LSISTLFIFMLVAVALLVRRYYVSGVTTTA-N-QVKLIVCILLILISSIATAA 474 (605)
Q Consensus 424 ~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 474 (605)
.+..++++|++.+++++..|++++...||. + ..++++++++++|.++++..
T Consensus 465 is~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~~~~~~sllG~l~c~~lmf~i 517 (953)
T TIGR00930 465 ISNFFLASYALINFSCFHASLLRSPGWRPRFKYYHWWLSLLGASLCCAIMFLI 517 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998886654433332 2 24566777777776666655
|
|
| >TIGR03810 arg_ornith_anti arginine/ornithine antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=411.43 Aligned_cols=362 Identities=18% Similarity=0.263 Sum_probs=302.0
Q ss_pred cccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccC-CchhhhhhhhhCh
Q 007398 72 KTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVA-GGSFAYLRVELGD 149 (605)
Q Consensus 72 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~-GG~y~~~~~~~g~ 149 (605)
|++|+++++++.+++++|+|+|..++..+.. +||. .+++|+++++++++.+++++|+++++|++ ||.|+|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~-ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAG-AAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 6899999999999999999999999998876 7886 78899999999999999999999999986 5999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHH
Q 007398 150 FVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFN 229 (605)
Q Consensus 150 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 229 (605)
..||++||.+|+++.............++...++...... ......++.+++++++.+|++|+|..+++|
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----------~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~ 149 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGN----------NPPSIIGASVLLWCVHFLVLRGVEGAAFIN 149 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC----------cHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 9999999999999877766666666666665543211100 000124566667778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCc---------c-CCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchh
Q 007398 230 YIASIIHVIVILFIIIGGFANADTKNYKA---------F-APFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIP 299 (605)
Q Consensus 230 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~---------~-~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp 299 (605)
++++++|+++++++++.++...+.+++.. + .+..+.++..++...+|+|.|+|.+++++||.|| +||+|
T Consensus 150 ~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip 228 (468)
T TIGR03810 150 TITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVG 228 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccch
Confidence 99999999988887776654332222111 0 0112445667888899999999999999999999 79999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CCh-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007398 300 IGLVGSMAVTTLAYCLLAIALCLMQPYYAINV-DAP-FSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHI 377 (605)
Q Consensus 300 ~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~-~~p-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 377 (605)
|++..++.++.++|++..++.....|.+++.. ++| ..++++...++++..++.+..+++.+++.++.+.+.||++|+|
T Consensus 229 ~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ 308 (468)
T TIGR03810 229 KATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLM 308 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888777643 455 6677777777888899999999999999999999999999999
Q ss_pred HhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007398 378 ARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF-----TKLNVLSNLLSISTLFIFMLVAVALLVRRYYV 446 (605)
Q Consensus 378 Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~ 446 (605)
||||.+|++|+|+| |+++|++|++++.+++.++.+. ..++.+.++.+...++.|.+.+++.+++|+|+
T Consensus 309 ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 309 AKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999 7899999999998887655443 46889999999999999999999999888764
|
Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. |
| >TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=400.21 Aligned_cols=440 Identities=17% Similarity=0.231 Sum_probs=323.1
Q ss_pred cccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHH-HHHHHHHhhhhhccccCCchhhhhhhhhChh
Q 007398 72 KTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSA-MLSVFCYTEFAVEIPVAGGSFAYLRVELGDF 150 (605)
Q Consensus 72 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~-~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~ 150 (605)
||++.++++.+.+..+++..-. +. . ...|+..++.|++++++. ++.+++++|+++++|++||.|.|+++++||.
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~~~--~~-~--a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLRGL--PA-E--AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHhhcc--hH-H--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 4699999999998888653222 22 1 237888888999999875 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHH
Q 007398 151 VAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNY 230 (605)
Q Consensus 151 ~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 230 (605)
+||.+||.+|+++....+......+..+........ .. +..+.+......+.++++++++.+|++|+|..+++++
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~ 150 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEAT--VD---ESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAK 150 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--cC---cccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 999999999999976655443333333322211100 00 0011111112245566666788899999999999999
Q ss_pred HHHHH-HHHHHHHHHHHhhhc---cccC----CCCccCCC--ChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhh
Q 007398 231 IASII-HVIVILFIIIGGFAN---ADTK----NYKAFAPF--GTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPI 300 (605)
Q Consensus 231 ~~~~~-~l~~~~~~~i~~~~~---~~~~----~~~~~~~~--g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ 300 (605)
+...+ ++++++++++.++.. .+.. ++.++.|+ ++.++..+ ...+|+|.|+|.++..+||+|||+||+||
T Consensus 151 ~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~iPr 229 (474)
T TIGR03813 151 WGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNYPI 229 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcccchhH
Confidence 87544 455554444444331 1111 11122232 23333322 24578999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCCh----HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007398 301 GLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAP----FSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTH 376 (605)
Q Consensus 301 ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 376 (605)
|+..++.++.++|++..+++....|+++...+++ +.+.++..|.++...++.+..+++.+++.++.+.+.||++++
T Consensus 230 Ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a 309 (474)
T TIGR03813 230 AILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLA 309 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998899887654433 334445556677777888888889999999999999999999
Q ss_pred HHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh--------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 007398 377 IARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF--------TKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSG 448 (605)
Q Consensus 377 ~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~ 448 (605)
+||||.+|++|+|+| |+++|++|++++++++.++.++ ..++.+.++.+...++.|++.+++.+++|+|+++
T Consensus 310 ~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~~ 388 (474)
T TIGR03813 310 VAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQPD 388 (474)
T ss_pred HhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999 8899999999998876544332 2377888999999999999999999999988887
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHH
Q 007398 449 VTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAI 528 (605)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 528 (605)
.+||++ .+.++.+.+.++.++++|.++..++.++|+..+...
T Consensus 389 ~~rpf~---------------------~p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~----------------- 430 (474)
T TIGR03813 389 RPRPYR---------------------IPGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTG----------------- 430 (474)
T ss_pred CCCCeE---------------------ecCCccchhHHHHHHHHHHHHHHheeEeCCcccCCC-----------------
Confidence 777755 233556556899999999999999999998743221
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhcc-ccccc
Q 007398 529 NIFLLGSIDRASFARFGVWTVILLLYYIFFGLHA-SYDTA 567 (605)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~-~~~~~ 567 (605)
.+|||.. +++++.+++..++|+.++||+ .+++|
T Consensus 431 -----~~~ny~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (474)
T TIGR03813 431 -----SPTRYVG-LLIGLAALFVTAPFLIYARRKPHWRDP 464 (474)
T ss_pred -----chHHHHH-HHHHHHHHHHHHHHHHHHHhchhhcCc
Confidence 2456644 566666677888887876544 24444
|
Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain. |
| >TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=390.88 Aligned_cols=398 Identities=16% Similarity=0.180 Sum_probs=295.8
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHH-HHHHHHHHhhhhhccc-cCCchhhhhhhhhC
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLS-AMLSVFCYTEFAVEIP-VAGGSFAYLRVELG 148 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~-~~~~a~~~ael~s~~P-~~GG~y~~~~~~~g 148 (605)
+|+++.++++++.++.+.+ ++..+. . +. .|...+..|++++++ .++.+++++||++++| ++||.|+|+++++|
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~~-~-a~-~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYPT-F-AT-SGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhHH-H-HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 5779999999999988863 343332 2 23 677777777887776 6889999999999997 99999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhh
Q 007398 149 DFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQ---PEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGS 225 (605)
Q Consensus 149 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 225 (605)
|.+||+++|.+|+.+....+.........+...+... .+.|. ..+..++++++++++|++|.|..
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~------------~~i~~l~i~~~~t~~n~~G~k~~ 145 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPALNEDPII------------KFIAALIIFWALAFSQFGGTKRT 145 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhccCcHH------------HHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999887554443322222223222211 11111 22455667778899999999999
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHhhhc---cccC----CCCccCCCC-hhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCC
Q 007398 226 SRFNYIASIIHVIV-ILFIIIGGFAN---ADTK----NYKAFAPFG-TRGVFKASAVLFFAYIGFDAVSTMAEETKNPAK 296 (605)
Q Consensus 226 ~~~~~~~~~~~l~~-~~~~~i~~~~~---~~~~----~~~~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r 296 (605)
++++++..+..++. ++++++.+... .++. +..++.|+. ..+.+..+...+|+|.|+|.+++++||+|||+|
T Consensus 146 ~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r 225 (507)
T TIGR00910 146 AKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGR 225 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcc
Confidence 99999876544333 33333333221 1111 112333321 123344555568999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHH----HHHHHhC--hhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007398 297 DIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFS----VAFEAVG--WDWAKYVVAFGALKGMTTVLLVSAVGQ 370 (605)
Q Consensus 297 ~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~----~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (605)
|+|||++.+++++.++|.+..+++....|++++..+++.. +.+...+ ..+...++.+..+++.+++.++++++.
T Consensus 226 ~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~ 305 (507)
T TIGR00910 226 DYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGP 305 (507)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888887788888775444333 3333333 256667888888999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007398 371 ARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF---------TKLNVLSNLLSISTLFIFMLVAVALLV 441 (605)
Q Consensus 371 sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~y~~~~~~~~~ 441 (605)
||+++++||||.+|++|+|+| |+++|++|++++++++.++.++ ..++.+.++.+...++.|++..++.++
T Consensus 306 sR~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~ 384 (507)
T TIGR00910 306 SRGMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFV 384 (507)
T ss_pred HHHHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 8899999999999988765432 135667778889999999999999999
Q ss_pred HhhhcCCCccccchhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCC
Q 007398 442 RRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQA 507 (605)
Q Consensus 442 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (605)
+|+|+++.+|+++. ..++.+.+.++.+.+++.++..++.++|+..
T Consensus 385 lr~k~p~~~rpf~~---------------------pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp~~ 429 (507)
T TIGR00910 385 LILKHPDLKRTFNI---------------------PGGIGGKLIIAGIGFLLSIFAFFISFLPPAN 429 (507)
T ss_pred HHHhcCCCCCCeEe---------------------cCCccchhhHHHHHHHHHHHHHheeeeCCCc
Confidence 99998888877662 2333444478888889999999988898873
|
Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 |
| >PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=375.56 Aligned_cols=360 Identities=29% Similarity=0.525 Sum_probs=311.5
Q ss_pred cChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHH-HHHHHHHhhhhhccccCCchhhhhhhhhChhHH
Q 007398 74 LTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSA-MLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVA 152 (605)
Q Consensus 74 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~-~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g 152 (605)
+|+++.++++++.++|+|++..+ .. .++|+..+++|++++++. ++.+++|+|+++++|++||.|.|+++.+||.+|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~-~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AA-ASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HH-TCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 58999999999999999998876 33 338888888899998887 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHH
Q 007398 153 FVAAGNILLEYVIGGAAVARSWTSYFATLCNKQ--PEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNY 230 (605)
Q Consensus 153 ~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 230 (605)
++++|.+++.|....+..+..+.+++...++.. +..|. ..+++++++++++.+|++|.|..+|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~l~~~g~~~~~~~~~ 145 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWP------------QFLIAIILILLFTLLNLLGIKLSGKIQN 145 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHH------------HHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccccccccccch------------heeeeecccccceEeeechhhhhhhhhh
Confidence 999999999999999999999999998876531 11222 3377888999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHhhhccccCCC-------CccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHH
Q 007398 231 IASIIHV-IVILFIIIGGFANADTKNY-------KAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGL 302 (605)
Q Consensus 231 ~~~~~~l-~~~~~~~i~~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai 302 (605)
+++.+++ ..++++++.++...+.+.. ..+.|+++.+++.++...+|+|.|+|++++++||+|| ||+||++
T Consensus 146 ~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai 223 (426)
T PF13520_consen 146 ILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAI 223 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHH
T ss_pred hhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeec
Confidence 9999999 5777777777765543222 2455667778899999999999999999999999877 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCC----hHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007398 303 VGSMAVTTLAYCLLAIALCLMQPYYAINVDA----PFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIA 378 (605)
Q Consensus 303 ~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~----p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~A 378 (605)
+.+.+++.++|++..++.....|+++....+ +....++..++++...++.+..+++.+++.++.+.+.+|++++||
T Consensus 224 ~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 303 (426)
T PF13520_consen 224 IISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMA 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccc
Confidence 9999999999999999999999988765432 466777777777899999999999999999999999999999999
Q ss_pred hcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 007398 379 RTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF------TKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTT 451 (605)
Q Consensus 379 rdg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~ 451 (605)
|||.+|++|+|+| |+++|++|+++.++++.++.+. .+++.+.++.++...+.|.+.+++.+++|+|+++.+|
T Consensus 304 ~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 381 (426)
T PF13520_consen 304 RDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKR 381 (426)
T ss_dssp HTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH
T ss_pred cccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC
Confidence 9999999999999 9999999999999999665432 2678999999999999999999999999999887654
|
... |
| >COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=372.45 Aligned_cols=375 Identities=32% Similarity=0.501 Sum_probs=324.8
Q ss_pred cccccccccChHH-HHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhh
Q 007398 66 SEHEMKKTLTWWD-LIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLR 144 (605)
Q Consensus 66 ~~~~l~r~l~~~~-~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 144 (605)
++++++|+++.++ ...+..+.++|.|+|..++..+.. + +...++|++++++..+.+++++|+++++|++||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~-~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGL-A-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHh-c-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehh
Confidence 4566789999999 899999999999999999888765 3 555555999999999999999999999999999999999
Q ss_pred hhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---Cc-chhhccCCCCCcCchhHHHHHHHHHHHHHHHh
Q 007398 145 VELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQP---ED-FRIIVHSMPEDYGQLDPIAVGVSAVICILAVV 220 (605)
Q Consensus 145 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 220 (605)
+.+||..++.++|.+++.+....+........++...++... .. +. ...++.+++++.+.+|++
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ln~~ 151 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLL------------IILIALALIALLTLLNLR 151 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchH------------HHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998888776421 11 21 347889999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccC-----CCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCC
Q 007398 221 STKGSSRFNYIASIIHVIVILFIIIGGFANADTKNYKAFA-----PFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPA 295 (605)
Q Consensus 221 g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~ 295 (605)
|+|..++++.+...++++.++++.+.++.+.+.++.+.+. ...+.+++.++...+|+|.|+|.+++++||+|||+
T Consensus 152 G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~ 231 (466)
T COG0531 152 GIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPK 231 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcc
Confidence 9999999999999999999999998888776654322211 12334678888899999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCC---ChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 007398 296 KDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVD---APFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQAR 372 (605)
Q Consensus 296 r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~---~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 372 (605)
|++||+++.+++.+.++|++..++.....|.+++... .|+.+..+...+.+...++.+..+.+.+++.++...+.+|
T Consensus 232 r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR 311 (466)
T COG0531 232 RTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSR 311 (466)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887655433 7888888877778889999999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh-h----cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 007398 373 YLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF-T----KLNVLSNLLSISTLFIFMLVAVALLVRRYYVS 447 (605)
Q Consensus 373 ~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~-~----~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~ 447 (605)
.+++|||||.+|++|+|+|+|+++|+++++++++++..+.+. . .++.+.++.+...++.|.+.+++.+.+|++++
T Consensus 312 ~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~ 391 (466)
T COG0531 312 VLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKP 391 (466)
T ss_pred HHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999833332 2 47899999999999999999999999998876
Q ss_pred CCccccc
Q 007398 448 GVTTTAN 454 (605)
Q Consensus 448 ~~~~~~~ 454 (605)
+.+|+++
T Consensus 392 ~~~~~~~ 398 (466)
T COG0531 392 DLKRPFR 398 (466)
T ss_pred CCCCccc
Confidence 6555544
|
|
| >PRK15238 inner membrane transporter YjeM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=365.57 Aligned_cols=436 Identities=15% Similarity=0.223 Sum_probs=301.2
Q ss_pred cccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHH-HHHHHHHHhhhhhcccc-CCchhhhhhhhh
Q 007398 70 MKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLS-AMLSVFCYTEFAVEIPV-AGGSFAYLRVEL 147 (605)
Q Consensus 70 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~-~~~~a~~~ael~s~~P~-~GG~y~~~~~~~ 147 (605)
.+|++|++++..+.++.++|.+.. +..... +|+..++.+++++++ .++.+++++|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~~---~~~~~~-~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFANS---PRAFYL-MGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCch---HHHHHH-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 478899999999999999986532 222233 788866667666655 68899999999999997 899999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC-CCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhh
Q 007398 148 GDFVAFVAAGNILLEYVIGGAAVARSWTS-YFATLCNKQ-PEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGS 225 (605)
Q Consensus 148 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~-~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 225 (605)
||.+|++++|.++.+++............ .....++.. .+.|+.. +.. .......++++.+++++.+|.+|+|..
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~a~~~~~~~t~vn~~g~~~~ 157 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFL--GLN-STQVVGILAVIWMILVTFVASKGINKI 157 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhh--ccc-chHHHHHHHHHHHHHHHHHHccchHHH
Confidence 99999999999888887655433322111 111112211 1111111 000 000122445566668899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHH----hhhcc-ccCC---CCccC---CCCh---hHHHHHHHHHHHHhhhhhhHhhhhhhh
Q 007398 226 SRFNYIASIIHVIVILFIIIG----GFANA-DTKN---YKAFA---PFGT---RGVFKASAVLFFAYIGFDAVSTMAEET 291 (605)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~i~----~~~~~-~~~~---~~~~~---~~g~---~~~~~~~~~~~~~~~G~e~~~~~a~E~ 291 (605)
.+++++.+..++...+++++. .+... +..+ ...+. ..++ .+++.++..+.|+|.|+|..++++||+
T Consensus 158 ~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 237 (496)
T PRK15238 158 AKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKT 237 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 999999887776543222211 11111 1111 01111 1111 357777888999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCC-------CChHHHHHHHhC-----------------hhHH
Q 007398 292 KNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINV-------DAPFSVAFEAVG-----------------WDWA 347 (605)
Q Consensus 292 k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~-------~~p~~~~~~~~g-----------------~~~~ 347 (605)
|||+|++|||+..++.++.++|++..+.+....|.++... +.|+. ..+..+ +.++
T Consensus 238 ~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~~ 316 (496)
T PRK15238 238 ENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVWF 316 (496)
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHHH
Confidence 9999999999999999999999999888777777665432 12332 122211 2445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh---h------cHH
Q 007398 348 KYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF---T------KLN 418 (605)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~---~------~~~ 418 (605)
..++.+..+.+.+++.++..++.+|.++..+|||.+||+|+|+| |+++|++|+++++++..++.+. . .|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~ 395 (496)
T PRK15238 317 ARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFN 395 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 55677888889999999999999999999999999999999999 8999999999998877655433 1 178
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Q 007398 419 VLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTL 498 (605)
Q Consensus 419 ~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 498 (605)
.+.++.+...++.|++.+++++++|| +++.+|+++.+ ....+++ .++++.+++.++..
T Consensus 396 ~l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~~--------------------~~~~~~~-~~~~~~~~~~~~~~ 453 (496)
T PRK15238 396 ILTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVVF--------------------KTKKSTL-IATIVVVLVVGFAN 453 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCceec--------------------CCcceeh-hHHHHHHHHHHHHH
Confidence 89999999999999999999998876 45556665531 1112333 56666777777766
Q ss_pred HHHHhccCCCCCCccccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhcc
Q 007398 499 YLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARFGVWTVILLLYYIFFGLHA 562 (605)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 562 (605)
++.+++|... .++++. ....++.+++..+.|+.|.+|+
T Consensus 454 ~~~~~~p~~~-------------------------~~~~~~-~~~~~~~~i~~~~~~~~~~~~~ 491 (496)
T PRK15238 454 VFTIIQPVIE-------------------------GDYQST-FWMIGGPVFFSILAWIIYQNYE 491 (496)
T ss_pred HHheeCCCcC-------------------------CCHHHH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 6666665311 022333 2344555566667777776665
|
|
| >PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=390.65 Aligned_cols=359 Identities=28% Similarity=0.437 Sum_probs=304.3
Q ss_pred HHHHHhhhhccchhhhcchHhHhhhcCc-hHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChhHHHHHHH
Q 007398 79 LIWFGIGAVIGAGIFVLTGQEARQEAGP-AVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAG 157 (605)
Q Consensus 79 ~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~~~g~ 157 (605)
+.++++++++|+|+|...+..... +|| +.++++++++++.++.+.+++|+++++|++||.|.|++|.+||..|+.+||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~-~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAA-AGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHh-cccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeH
Confidence 346788999999999999998887 787 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Q 007398 158 NILLEYVIGGAAVARSWTSYFATL--CNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASII 235 (605)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 235 (605)
.+++.++...+.+....+.+++.. +......|.. ..+++.+++++++.+|++|+|..++++.++..+
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i 149 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVW-----------GILIAIIFILLITLLNLFGVRVSGKIEFILTII 149 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccccc-----------cchhhhhhhhhhhhhhhhhhhccchHHHHHHHH
Confidence 999999999999988887777665 2222212211 014577888888999999999999999999999
Q ss_pred HHHHHHHHHHHhhh--cc--ccCCC---------CccCCCC--------hhHHHHHHHHHHHHhhhhhhHhhhhhhhcCC
Q 007398 236 HVIVILFIIIGGFA--NA--DTKNY---------KAFAPFG--------TRGVFKASAVLFFAYIGFDAVSTMAEETKNP 294 (605)
Q Consensus 236 ~l~~~~~~~i~~~~--~~--~~~~~---------~~~~~~g--------~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p 294 (605)
+++.++.+++.++. .. +..+. .+..+++ +.+++.++..++++|.|+|+.+.++||+|||
T Consensus 150 ~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P 229 (478)
T PF00324_consen 150 KLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNP 229 (478)
T ss_pred hhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCc
Confidence 99998888877722 11 11111 1123333 7889999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCC------ChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhh
Q 007398 295 AKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVD------APFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAV 368 (605)
Q Consensus 295 ~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~------~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (605)
+|++|||+..+++.+.++|++..++.....|.++.... +|+.++.+..+.++...++.+..+.+.+++.++.++
T Consensus 230 ~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~ 309 (478)
T PF00324_consen 230 RKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLY 309 (478)
T ss_pred hhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhc
Confidence 99999999999999999999999999998998875321 489999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHhh------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007398 369 GQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFT------KLNVLSNLLSISTLFIFMLVAVALLVR 442 (605)
Q Consensus 369 ~~sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~y~~~~~~~~~~ 442 (605)
+.||++++|||||.+|+.+.+.|+|+|+|++|++++.+++++..+.. .++.+.++.++..++.|.+.+++.++.
T Consensus 310 ~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~ 389 (478)
T PF00324_consen 310 AASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRF 389 (478)
T ss_pred ccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhh
Confidence 99999999999999996666667799999999999999887666542 366788899999999999999999987
Q ss_pred hhhcCCC
Q 007398 443 RYYVSGV 449 (605)
Q Consensus 443 r~~~~~~ 449 (605)
|++.+.+
T Consensus 390 r~~~~~~ 396 (478)
T PF00324_consen 390 RKKFKYR 396 (478)
T ss_pred hhhhccc
Confidence 7764433
|
A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane |
| >TIGR00837 araaP aromatic amino acid transport protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=255.33 Aligned_cols=338 Identities=14% Similarity=0.110 Sum_probs=266.8
Q ss_pred HHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChhHHHHHHHHHH
Q 007398 81 WFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNIL 160 (605)
Q Consensus 81 ~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~~~g~~~~ 160 (605)
++.+++++|+|++..|+..+.. +++..+...+++++.+...+++++|+++++|++||.|+|.++.+||..+++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~-g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGA-WFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 4567899999999999987654 555677778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-CCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Q 007398 161 LEYVIGGAAVARSWTSYFATLCNKQ-PEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIV 239 (605)
Q Consensus 161 ~~~~~~~a~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~ 239 (605)
+.+....+++....++++...++.. ...+. .....+++.+++..+++.|.|..+|++.+++..+++.
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~ 150 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGFPWS------------ARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIA 150 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCCCcc------------HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 9888888888888788887766421 11111 1255667777888999999999999999999999999
Q ss_pred HHHHHHHhhhccccCCCCccC--CCChhHHHHHHHHHHHHhhhhh-hHhhhhhhhcCCCCchhhHHHHHHHHHHHHHHHH
Q 007398 240 ILFIIIGGFANADTKNYKAFA--PFGTRGVFKASAVLFFAYIGFD-AVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLL 316 (605)
Q Consensus 240 ~~~~~i~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~G~e-~~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~ 316 (605)
++++++.++.+.+.+|+.+.. +.++.++..++...+++| |+| ....+.+|+|+++|++||+++.+..++.++|++.
T Consensus 151 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~ 229 (381)
T TIGR00837 151 FALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILW 229 (381)
T ss_pred HHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888776666654421 235667778888888888 565 6888899998779999999999999999999999
Q ss_pred HHHHHhcccccccCC-------CChHHHHHHH-hChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCchhhh
Q 007398 317 AIALCLMQPYYAINV-------DAPFSVAFEA-VGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLA 388 (605)
Q Consensus 317 ~~~~~~~~~~~~~~~-------~~p~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP~~f~ 388 (605)
..+..+..|.+++.+ .+++.+..+. .+.++...++.++.++++.++.++...+.++. +++.++
T Consensus 230 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~~ 300 (381)
T TIGR00837 230 QLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLFK 300 (381)
T ss_pred HHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhC
Confidence 999999999887631 1466667764 57777888999999999999999887777633 455555
Q ss_pred hhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007398 389 QVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVR 442 (605)
Q Consensus 389 ~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~ 442 (605)
+.|++++ |..+.+++.+..++++.+.....+..+...+...+++...+..+..
T Consensus 301 ~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~ 353 (381)
T TIGR00837 301 FDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLA 353 (381)
T ss_pred CCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444434 6788888888888888776666666777777666666666655444
|
aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli. |
| >KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=254.19 Aligned_cols=395 Identities=15% Similarity=0.179 Sum_probs=310.7
Q ss_pred ccChHHHHHHHhh-hhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccc-cCCchhhhhhhhhCh
Q 007398 73 TLTWWDLIWFGIG-AVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIP-VAGGSFAYLRVELGD 149 (605)
Q Consensus 73 ~l~~~~~~~~~~~-~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P-~~GG~y~~~~~~~g~ 149 (605)
+||.++.++.-.. +|...-+|...|.+..+ +|.. .++-++++-.+.+++.++...+++.-. +.||.|+.++|.+||
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~-aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQ-AGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 7888876655444 55566778899999877 7776 777778888888889999999999987 788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHH
Q 007398 150 FVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFN 229 (605)
Q Consensus 150 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 229 (605)
.+|--.|..+.+++++.++.+..++.+-+.+.++.....-. ....+|+++++..+.+..+..++..+++.|...++|..
T Consensus 145 EfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~s-g~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas 223 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGAS-GSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKAS 223 (945)
T ss_pred ccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCc-ccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhh
Confidence 99999999999999999999999999999999986543211 11346888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCC---------------ccCCC--------------------ChhHHHHHHHHH
Q 007398 230 YIASIIHVIVILFIIIGGFANADTKNYK---------------AFAPF--------------------GTRGVFKASAVL 274 (605)
Q Consensus 230 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~---------------~~~~~--------------------g~~~~~~~~~~~ 274 (605)
++..++..+.+..+.+..++.++.++.. .+... +...+-..+...
T Consensus 224 ~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~ 303 (945)
T KOG1288|consen 224 NILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVF 303 (945)
T ss_pred hhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheee
Confidence 8887776666655555544433322210 01111 112244455566
Q ss_pred HHHhhhhhhHhhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHhChhHHHHHHHHH
Q 007398 275 FFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFG 354 (605)
Q Consensus 275 ~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~ 354 (605)
+-+..|.-+.++|++|.|+|+|++||+.+.++...+++|+++.+.+.+..|...+..+..+. .... .-..++.++
T Consensus 304 F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~---~~is--l~p~fi~iG 378 (945)
T KOG1288|consen 304 FPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVM---MHIS--LHPPFILIG 378 (945)
T ss_pred eccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhhe---eecc--ccchHHHHH
Confidence 67789999999999999999999999999999999999999999998888877665553322 2111 122466777
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhcCCCc--hhhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 007398 355 ALKGMTTVLLVSAVGQARYLTHIARTHMMP--PWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIF 432 (605)
Q Consensus 355 ~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP--~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y 432 (605)
++.+.+.+..+.+.++||++.++|||+.+| -.|+|...+.+.|++|+.++.++.-+..+.+++|.+..+.++.++++|
T Consensus 379 i~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlty 458 (945)
T KOG1288|consen 379 ILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLTY 458 (945)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999 678888888999999999999999888888999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCccc-cchhHH-HHHHHHHHHHHHHHHH
Q 007398 433 MLVAVALLVRRYYVSGVTTT-ANQVKL-IVCILLILISSIATAA 474 (605)
Q Consensus 433 ~~~~~~~~~~r~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~ 474 (605)
...+++++.++.......|| ++...| ..+++.+.+..+++.+
T Consensus 459 ~~vNLacl~LeissAPNFRPtFkyF~w~TclvG~l~s~~mMfvV 502 (945)
T KOG1288|consen 459 GAVNLACLLLEISSAPNFRPTFKYFNWHTCLVGVLLSLGMMFVV 502 (945)
T ss_pred HHHHHHHHHhhhccCCCCCchhhhhhHHHHHHHHHHHHhhhhee
Confidence 99999999998877666665 333333 3455555555555443
|
|
| >KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=243.97 Aligned_cols=399 Identities=18% Similarity=0.202 Sum_probs=302.9
Q ss_pred cccCh-HHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccc-cCCchhhhhhhhhC
Q 007398 72 KTLTW-WDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIP-VAGGSFAYLRVELG 148 (605)
Q Consensus 72 r~l~~-~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P-~~GG~y~~~~~~~g 148 (605)
-++|. ..++.-++-++.|.-.|.....+... +|.. .++..++++.+.++++.+++.+++.-- .+||.|..++|.+|
T Consensus 112 ~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~-AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLG 190 (1075)
T KOG2082|consen 112 ARMGTLMGVYLPCLQNILGVILFIRLTWVVGM-AGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLG 190 (1075)
T ss_pred cccceeeeeeHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccC
Confidence 34553 34556677788899999999998877 7876 888888899999999999999999876 78999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC----CcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcch
Q 007398 149 DFVAFVAAGNILLEYVIGGAAVARSWTSYFATLC-NKQP----EDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTK 223 (605)
Q Consensus 149 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 223 (605)
|.+|-.+|.++.++..+..+.+..+..+.+...+ +... +..+ ....+..+...+.+.+++++.+++...|+|
T Consensus 191 PEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~---~~~~am~nnlRvYGT~~Li~m~lIVf~GVK 267 (1075)
T KOG2082|consen 191 PEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAH---DEAAAMLNNLRVYGTVFLILMALIVFVGVK 267 (1075)
T ss_pred ccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccc---cchhhhhcceehHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887643 2110 0000 001222333558899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcc---------------------c---------cCC------------------
Q 007398 224 GSSRFNYIASIIHVIVILFIIIGGFANA---------------------D---------TKN------------------ 255 (605)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~---------------------~---------~~~------------------ 255 (605)
...++..++..+.++.++.+.+.++-.. + ..|
T Consensus 268 ~Vnk~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~ 347 (1075)
T KOG2082|consen 268 FVNKFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSAT 347 (1075)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcc
Confidence 9999999999988888876665543210 0 001
Q ss_pred ---------CC---c----------------------cCCCC-------------------hhHHHHHHHHHHHHhhhhh
Q 007398 256 ---------YK---A----------------------FAPFG-------------------TRGVFKASAVLFFAYIGFD 282 (605)
Q Consensus 256 ---------~~---~----------------------~~~~g-------------------~~~~~~~~~~~~~~~~G~e 282 (605)
.+ + +.+.| -..|..-+.+.+.+.+|+-
T Consensus 348 c~~y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGIm 427 (1075)
T KOG2082|consen 348 CDEYFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIM 427 (1075)
T ss_pred cccccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceee
Confidence 00 0 00000 0112333344456889999
Q ss_pred hHhhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHH-----HhChhHHHHHHHHHHHH
Q 007398 283 AVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFE-----AVGWDWAKYVVAFGALK 357 (605)
Q Consensus 283 ~~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~-----~~g~~~~~~~~~~~~~~ 357 (605)
+.++.+++.|||+|++|.+.+.+++....+|+...+.+..+.....+.+. +-+... ..-.-.-.+++.++.++
T Consensus 428 aGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDK--fG~sv~g~lVva~laWPsPwVi~IGsFl 505 (1075)
T KOG2082|consen 428 AGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDK--FGQSVGGNLVVATLAWPSPWVIVIGSFL 505 (1075)
T ss_pred ecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhh--hhhhccCcEEEEEecCCCceeeehhHHH
Confidence 99999999999999999999999999999999888887776663222110 000000 00001123577889999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhcCCCc--hhhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHH
Q 007398 358 GMTTVLLVSAVGQARYLTHIARTHMMP--PWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLV 435 (605)
Q Consensus 358 ~~~~~~~~~~~~~sR~l~a~Ardg~lP--~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~ 435 (605)
|++++.+.++.+++|++++.|||+.+| +.|+|.+ +++.|.+|++++.+++-.-+++++.+.+..+.+++++++|.++
T Consensus 506 ST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fV 584 (1075)
T KOG2082|consen 506 STCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFV 584 (1075)
T ss_pred HHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999988 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-hcCCCccccc-hhHHHHHHHHHHHHHHHHHHhcc
Q 007398 436 AVALLVRRY-YVSGVTTTAN-QVKLIVCILLILISSIATAAYWG 477 (605)
Q Consensus 436 ~~~~~~~r~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 477 (605)
++++.+.-. |-|+.+++++ ..+.+..++.-+|.++++...|.
T Consensus 585 NLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~SWy 628 (1075)
T KOG2082|consen 585 NLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFISSWY 628 (1075)
T ss_pred hHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 998876332 2233333344 44557888899999999998774
|
|
| >TIGR00912 2A0309 spore germination protein (amino acid permease) | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-22 Score=207.00 Aligned_cols=285 Identities=15% Similarity=0.142 Sum_probs=233.7
Q ss_pred ccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChhHH
Q 007398 73 TLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVA 152 (605)
Q Consensus 73 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g 152 (605)
+++.+|.+++.++.++|+|++..|+..+.. +|+.+|++++++++.+++.+++++|+++++|+. +.++|.++.+||..|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~-a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQS-AGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILG 79 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhc-cCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHH
Confidence 689999999999999999999999988776 888899999999999999999999999999987 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHH
Q 007398 153 FVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIA 232 (605)
Q Consensus 153 ~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 232 (605)
++.+|.+++......+.....++++++.....+++.+ .+.+.+++++...+..|.|..+|++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~~---------------~~~l~~l~~~~~~~~~Gi~~i~r~~~i~ 144 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTPII---------------VIIILIIIVSIYIVRKGIEVLLRTAEIL 144 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 9999999988888888888888888876554333322 5667777788889999999999999999
Q ss_pred HHHHHHH-HHHHHHHhhhccccCCCCccCCCChhHHHHHHH-HHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHHHHHHH
Q 007398 233 SIIHVIV-ILFIIIGGFANADTKNYKAFAPFGTRGVFKASA-VLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTT 310 (605)
Q Consensus 233 ~~~~l~~-~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~~ 310 (605)
..++++. ++++........+.+|..|..+.|+.+.+.+.. ...++|.|+|....+.+|+||| |+.||++..++.++.
T Consensus 145 ~~~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~~ 223 (359)
T TIGR00912 145 LIIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIGV 223 (359)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHHH
Confidence 9888777 344444444455677888888888888888877 8889999999999999999996 579999999999999
Q ss_pred HHHHHHHHHHHhcccccccCC-CChHHHHHHHhChh-HHH---HHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 007398 311 LAYCLLAIALCLMQPYYAINV-DAPFSVAFEAVGWD-WAK---YVVAFGALKGMTTVLLVSAVGQARYLT 375 (605)
Q Consensus 311 v~y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~-~~~---~~~~~~~~~~~~~~~~~~~~~~sR~l~ 375 (605)
++|.+..++..+..+.++... ..|..+..+....+ ... .++....+.+.+.....+++..++.+-
T Consensus 224 ~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~ 293 (359)
T TIGR00912 224 LLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLS 293 (359)
T ss_pred HHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888754 57988888855433 322 334444445555555566666666654
|
This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases. |
| >KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=198.92 Aligned_cols=391 Identities=17% Similarity=0.249 Sum_probs=314.1
Q ss_pred ccccChHHHHHHHhh-hhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccc-cCCchhhhhhhhh
Q 007398 71 KKTLTWWDLIWFGIG-AVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIP-VAGGSFAYLRVEL 147 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~-~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P-~~GG~y~~~~~~~ 147 (605)
+-++|||+.++...- ++.|.-+|...+.+.++ +|.+ .++...++.++.+.++++..-++++-- ++||.|..++|.+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgq-agi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQ-AGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeec-chhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 456899988766554 66799999999999988 8877 888888899999999999999999877 8999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhH
Q 007398 148 GDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSR 227 (605)
Q Consensus 148 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 227 (605)
|+.+|-..|..|.+++.+.++.+..++++.+..++.... .+. .+-++.+..++...+|..|+|+..|
T Consensus 106 g~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s-~~~------------i~gi~~vt~~ill~i~~ag~~w~~k 172 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES-KEM------------IDGIGSVTVLILLAINVAGVEWEAK 172 (643)
T ss_pred cccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc-HHH------------hcchhHHHHHHHHHhhhccchhHHH
Confidence 999999999999999999999999999999999887652 222 2247788888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc--------------CCCCccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcC
Q 007398 228 FNYIASIIHVIVILFIIIGGFANADT--------------KNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKN 293 (605)
Q Consensus 228 ~~~~~~~~~l~~~~~~~i~~~~~~~~--------------~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~ 293 (605)
.|.++..+.++.+.-+++..+...+. +|+.+-...+ ..++.-+...+.+.+|.-+.++++++.|+
T Consensus 173 ~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~-~tfF~vf~vfFpaatgilaG~nisGdL~~ 251 (643)
T KOG2083|consen 173 LQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG-YTFFSVFAVFFPAATGILAGANISGDLKD 251 (643)
T ss_pred HHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC-CceEeeeeeecchhhhhhccccccCCCCC
Confidence 99999988888887777666553320 1111111111 24666666777889999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCC-----CC----hHHHHHHHhC-hhHHHHHHHHHHHHHHHHHH
Q 007398 294 PAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINV-----DA----PFSVAFEAVG-WDWAKYVVAFGALKGMTTVL 363 (605)
Q Consensus 294 p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~-----~~----p~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 363 (605)
|++++|++.+.++.....+|+.+..-.......+.... +. .+.+-++... .......+..+...+.+++.
T Consensus 252 Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsa 331 (643)
T KOG2083|consen 252 PQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSA 331 (643)
T ss_pred chhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHH
Confidence 99999999999999999999877665544333332211 11 2333333111 11223466777888888889
Q ss_pred HHHhhhhhHHHHHHHhcCCCc--hhhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007398 364 LVSAVGQARYLTHIARTHMMP--PWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLV 441 (605)
Q Consensus 364 ~~~~~~~sR~l~a~Ardg~lP--~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~ 441 (605)
.+++..++++++++.+|..-| .+|.|-.++++.|+++..++...+...+.++..+.+..+.+...+.+|.+.+.+++.
T Consensus 332 lsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~ 411 (643)
T KOG2083|consen 332 LSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFH 411 (643)
T ss_pred HHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhh
Confidence 999999999999999999999 788999999999999999999999888889999999999999999999999999998
Q ss_pred HhhhcCCCccccchh--HHHHHHHHHHHHHHHHHHhc
Q 007398 442 RRYYVSGVTTTANQV--KLIVCILLILISSIATAAYW 476 (605)
Q Consensus 442 ~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 476 (605)
-+....+..||.... +|..+++.++|..+++..-|
T Consensus 412 aSl~~s~~wRp~f~~yn~wVSllGalKOG~ImFli~w 448 (643)
T KOG2083|consen 412 ASLAISEGWRPSFKFYNAWVSLLGALLCLAIMFLISW 448 (643)
T ss_pred hhhccccccCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777765443 48999999999999887755
|
|
| >TIGR00796 livcs branched-chain amino acid uptake carrier | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-18 Score=177.15 Aligned_cols=337 Identities=14% Similarity=0.129 Sum_probs=253.0
Q ss_pred hhhhccchhhhcchHhHhhhcCc-h-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChhHHHHHHHHHHH
Q 007398 84 IGAVIGAGIFVLTGQEARQEAGP-A-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILL 161 (605)
Q Consensus 84 ~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~~~g~~~~~ 161 (605)
++.-+|.|.+..|.....+.+.+ . +.++|+++++...+.+++ +.|++||.|++..+.+||..|++.+|..++
T Consensus 5 FamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~l 78 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILYL 78 (378)
T ss_pred HHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHHH
Confidence 44457899999999888774444 3 788999999999888887 899999999999999999999999997765
Q ss_pred HHHHH-----HHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Q 007398 162 EYVIG-----GAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIH 236 (605)
Q Consensus 162 ~~~~~-----~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 236 (605)
..-.. .++.+...+ +...++....... ..+..+++..+..++++.+.|...+++++++..+
T Consensus 79 ~iGP~~aiPRtaa~s~e~~--i~p~~~~~~~~~~------------l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~l 144 (378)
T TIGR00796 79 TIGPLFAIPRTATVSFEMG--IAPLLHSPTSLLA------------LFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPAL 144 (378)
T ss_pred HHHhchhhhHHHHHHHHHH--HHhccCcccchHH------------HHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHH
Confidence 44322 222332222 3333332111010 2256666777777799999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCccCCCCh-hHHHHHHHHHHHHhh-------hhhhHhhhhh-hhcCCCCchhhHHHHHH-
Q 007398 237 VIVILFIIIGGFANADTKNYKAFAPFGT-RGVFKASAVLFFAYI-------GFDAVSTMAE-ETKNPAKDIPIGLVGSM- 306 (605)
Q Consensus 237 l~~~~~~~i~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~-------G~e~~~~~a~-E~k~p~r~vp~ai~~~~- 306 (605)
++.++.+++.++.+...+...+..+..- ..+..++....+++. |+-....+.+ |.|||+|+.|+.+..++
T Consensus 145 Li~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~i 224 (378)
T TIGR00796 145 LVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLI 224 (378)
T ss_pred HHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999997643322111111111 347778888888888 9999999988 99999999999999998
Q ss_pred HHHHHHHHHHHHHHHhcccccccC----CCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCC
Q 007398 307 AVTTLAYCLLAIALCLMQPYYAIN----VDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHM 382 (605)
Q Consensus 307 ~~~~v~y~l~~~~~~~~~~~~~~~----~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~ 382 (605)
..+...|+...++..+..+.++.. .++.+.++.+..-++.+..++.+...++++++.++...+.++
T Consensus 225 a~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~---------- 294 (378)
T TIGR00796 225 AAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE---------- 294 (378)
T ss_pred HHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 667778888888888877765442 234666777777778899999999999999999998877444
Q ss_pred CchhhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhcCCCccccch
Q 007398 383 MPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLV--RRYYVSGVTTTANQ 455 (605)
Q Consensus 383 lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~--~r~~~~~~~~~~~~ 455 (605)
+|+|+++| +|+.+.++...+...+.....++.+.++..-...+.|-......+. .|++.|+.+|+++.
T Consensus 295 ---~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~ 364 (378)
T TIGR00796 295 ---YFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQI 364 (378)
T ss_pred ---HHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeh
Confidence 46677754 9999999888887777777789999998888888888776666655 67777766666663
|
transmembrane helical spanners. |
| >PHA02764 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-19 Score=168.49 Aligned_cols=279 Identities=15% Similarity=0.177 Sum_probs=178.8
Q ss_pred ccccccccccChHHHHHHHhhhhccchhhhc-chHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhh
Q 007398 65 RSEHEMKKTLTWWDLIWFGIGAVIGAGIFVL-TGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYL 143 (605)
Q Consensus 65 ~~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~-~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~ 143 (605)
|+..+|.|+.+.+|.++..++.+.+ |.-.. +........|...+++|+++++++++.++||+|+++++|++||.|.|.
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~-Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYI 83 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGI-LSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYI 83 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhcc-chhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEh
Confidence 3678899999999999999998842 22111 222222224555889999999999999999999999999999999999
Q ss_pred hhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcch
Q 007398 144 RVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTK 223 (605)
Q Consensus 144 ~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 223 (605)
+|++||.+|++.||..|+.+....++.+-.-. --+..++ ..... .+-.- ......+...|.|
T Consensus 84 SRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~----~~~~i~~-~~~~f------------~~~~s-~~~i~~~i~~~~~ 145 (399)
T PHA02764 84 RTAFSSKFYTIFGISLWLTYVLSQPILGDLVL----LNFNIQN-QFEQF------------LIVES-LFPIVLLIIANKK 145 (399)
T ss_pred HHhhCccHHHHHHHHHHHHHHhhcchhhheee----eeeeeHH-HHHHH------------HHHHH-HHHHHHHHHcccH
Confidence 99999999999999999988776655431110 0000000 00000 11111 1112223445677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccCCCCh-hHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHH
Q 007398 224 GSSRFNYIASIIHVIVILFIIIGGFANADTKNYKAFAPFGT-RGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGL 302 (605)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai 302 (605)
..+|...++.....+ ++-+...+.-|... .+... .....+...-.-+|.-.|+..+.++|.||-+|....+.
T Consensus 146 ~~~~~v~il~~a~~i------~aif~~~~s~n~~~-~~f~~snt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gy 218 (399)
T PHA02764 146 IYAKIVDILAIAQII------IAIFIAFKSFNFQY-QNFTISNTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGY 218 (399)
T ss_pred HHHHHHHHHHHHHHH------HHHHhhccceeEEE-cceeehHHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhh
Confidence 777777664444333 22222222223221 11112 22455566666777888999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCC
Q 007398 303 VGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHM 382 (605)
Q Consensus 303 ~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~ 382 (605)
..+..++.++-+.... ++ . .++.+......++-+....-..||+.++||-|+.
T Consensus 219 f~s~~~~~~~~ii~sy-------------~n-~-------------~il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~ 271 (399)
T PHA02764 219 FVSYGIVAILSIIDSY-------------SN-L-------------NILFALMPIWFFSYMPIANKIQSRLIQTMSFDKV 271 (399)
T ss_pred HHHHHHHHHHHHHHhh-------------hh-H-------------HHHHHHHHHHHHhheeeecchHHHHHHHHHhhhh
Confidence 8777766654443320 00 0 1111123333444444445568999999999999
Q ss_pred CchhhhhhcCCCcchh
Q 007398 383 MPPWLAQVHGKTGTPV 398 (605)
Q Consensus 383 lP~~f~~~~~r~~~P~ 398 (605)
+|+.|+|+|| ++|+
T Consensus 272 lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 272 LPEKFSKINP--NVLL 285 (399)
T ss_pred chHHHhccCC--Ccee
Confidence 9999999983 7787
|
|
| >PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-16 Score=166.68 Aligned_cols=350 Identities=15% Similarity=0.146 Sum_probs=261.9
Q ss_pred ccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChhH
Q 007398 73 TLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFV 151 (605)
Q Consensus 73 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~ 151 (605)
+-+.++..++..|+.+|.|++..|-.... +|.. ..+..++++.++...++.++|...+.|+..+.-..+++.+||..
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~--~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g 79 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAG--AGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKG 79 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHH
Confidence 44678899999999999999998876543 5644 77888889999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHH
Q 007398 152 AFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPE-DFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNY 230 (605)
Q Consensus 152 g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 230 (605)
+++.+..+++.......++..+.++.+.+.++.... .+. .......+.+++..+.+.|.|...|+++
T Consensus 80 ~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~------------~~~~~~~f~~i~~~iv~~g~~~v~~~n~ 147 (394)
T PF03222_consen 80 GIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLS------------PWLSSLLFTIIFGGIVYFGTKAVDRINR 147 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCc------------HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999998888888888998999988888765321 111 1245566667777788899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCcc--CCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHHHHH
Q 007398 231 IASIIHVIVILFIIIGGFANADTKNYKAF--APFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAV 308 (605)
Q Consensus 231 ~~~~~~l~~~~~~~i~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~ 308 (605)
++...+++.++.+.+.++.+.+.++.... .+..+...+..+...+++|.-+...+.+.+..++-+|++.|++..+..+
T Consensus 148 ~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i 227 (394)
T PF03222_consen 148 VLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLI 227 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHH
Confidence 99999999999999999988887776541 2356777888999999999999999999999997788999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccC----CC---ChHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Q 007398 309 TTLAYCLLAIALCLMQPYYAIN----VD---APFSVAFE-AVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIART 380 (605)
Q Consensus 309 ~~v~y~l~~~~~~~~~~~~~~~----~~---~p~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ard 380 (605)
..++|++...+..+..|.++.. .+ ++.....+ ..++++...+..+...++..+|..+...+....+...
T Consensus 228 ~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~--- 304 (394)
T PF03222_consen 228 PLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADL--- 304 (394)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 9999999999999988877642 22 24444444 4567788888888999999999888877766665432
Q ss_pred CCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhc
Q 007398 381 HMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFT--KLNVLSNLLSISTLFIFM-LVAVALLVRRYYV 446 (605)
Q Consensus 381 g~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~y~-~~~~~~~~~r~~~ 446 (605)
|.+.|.+.+. .....++.+..+++.+.. .|....+..+....+-+. ++.+.....|+++
T Consensus 305 ------~k~~~~~~~r-~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~~~~il~~ilP~~m~~~~r~~~ 366 (394)
T PF03222_consen 305 ------FKLKNNSSGR-LKTWLLTFLPPLIFALLFPNGFLIALGYAGIGIAILLGILPALMVWKARKRK 366 (394)
T ss_pred ------HcCCccccch-HHHHHHHHHhHHHHHHHCcHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHccc
Confidence 2221211122 233444555555555553 344444555533333333 3333333344443
|
A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region. |
| >TIGR00814 stp serine transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-16 Score=159.57 Aligned_cols=282 Identities=12% Similarity=0.086 Sum_probs=214.4
Q ss_pred HHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHH----Hhhhhhcccc-CCchhhhhhhhhChhHHH
Q 007398 79 LIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFC----YTEFAVEIPV-AGGSFAYLRVELGDFVAF 153 (605)
Q Consensus 79 ~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~----~ael~s~~P~-~GG~y~~~~~~~g~~~g~ 153 (605)
-....+++++|+|++..|.. +|...++.++++++++.+.++. +.|.....|. ..+.++++++.+||..|.
T Consensus 8 w~~~l~gt~IGaGiL~LP~~-----ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ 82 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLFLPIQ-----AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGI 82 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHH
Confidence 35567788899999999875 3444566677777666665554 4444333343 668999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHH
Q 007398 154 VAAGNILLEYVIGGAAVARSWTSYFATLCNK----QPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFN 229 (605)
Q Consensus 154 ~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 229 (605)
+.++.|++.......+++....+.+.+.+.. +.+. ..+..+.+++....++..|.|...|++
T Consensus 83 ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~--------------~~i~~lilv~il~~iv~~G~~~i~r~~ 148 (397)
T TIGR00814 83 LITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPL--------------RGLLSLALILILVAIMSFGEKLLFKIM 148 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH--------------HHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 9999999999888888887777766655432 1111 225666677777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCc--cCCCChhHHHHHHHHHHHHhhhhhhHhhhh----hhhcCC---CCchhh
Q 007398 230 YIASIIHVIVILFIIIGGFANADTKNYKA--FAPFGTRGVFKASAVLFFAYIGFDAVSTMA----EETKNP---AKDIPI 300 (605)
Q Consensus 230 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a----~E~k~p---~r~vp~ 300 (605)
.++...+++.++.+.+..+.+.+.+|... .....+...+.++...+|+|.|+|..++++ +|.+|| +|+..|
T Consensus 149 ~il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k 228 (397)
T TIGR00814 149 GPLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLR 228 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHH
Confidence 99999999999888888888888777642 222345678999999999999999999998 777655 577889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCC----CCh-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 007398 301 GLVGSMAVTTLAYCLLAIALCLMQPYYAINV----DAP-FSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLT 375 (605)
Q Consensus 301 ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~----~~p-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 375 (605)
++..+..+..++|++..+...+..++++..+ +.+ +....+....++...+..+...++..+|..+...+....+.
T Consensus 229 ~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~ 308 (397)
T TIGR00814 229 IMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLN 308 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999988887521 222 22333466677777777777777888888888887777777
Q ss_pred HHHh
Q 007398 376 HIAR 379 (605)
Q Consensus 376 a~Ar 379 (605)
.+-+
T Consensus 309 ~l~~ 312 (397)
T TIGR00814 309 GIVL 312 (397)
T ss_pred HHHH
Confidence 7664
|
The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli. |
| >PRK09664 tryptophan permease TnaB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-15 Score=152.26 Aligned_cols=335 Identities=10% Similarity=0.069 Sum_probs=241.8
Q ss_pred ChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChhHHH
Q 007398 75 TWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAF 153 (605)
Q Consensus 75 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~ 153 (605)
+.+...++..|+.+|.|++..|-..+. .|-. +....+++++++...++.+.|...++|..-+....+++.+||.+..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~--~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAG--AWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 666788999999999999998876543 4543 7788899999999999999999999998888999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 007398 154 VAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIAS 233 (605)
Q Consensus 154 ~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 233 (605)
+.+..+.+-......++..+.++.++..++... ..... .....+.+.+++..+.+.|.|...|+++++.
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~~i~----------~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~ 156 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNL-GYHAN----------PRIVGICTAIFVASVLWISSLAASRITSLFL 156 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cCCCc----------HHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 888777776667777888888888888775310 01000 1245678888888899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCccCCCC-----hhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHHHHH
Q 007398 234 IIHVIVILFIIIGGFANADTKNYKAFAPFG-----TRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAV 308 (605)
Q Consensus 234 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~ 308 (605)
..+++.++..+.....+.+.++........ +...+.++...+++|.=...++.+....++-.|+++|+++.+..+
T Consensus 157 ~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~I 236 (415)
T PRK09664 157 GLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLL 236 (415)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHH
Confidence 999999888787777777766654221111 234677888888899888889999988887668899999999999
Q ss_pred HHHHHHHHHHHHHhcccccccC----CCChHHH----HHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Q 007398 309 TTLAYCLLAIALCLMQPYYAIN----VDAPFSV----AFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIART 380 (605)
Q Consensus 309 ~~v~y~l~~~~~~~~~~~~~~~----~~~p~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ard 380 (605)
..++|++...+..+..|+++.. .+....+ ..+...+++...+..+...++..+|..+...+....+..+-|
T Consensus 237 pLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~- 315 (415)
T PRK09664 237 ALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFK- 315 (415)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 9999999999999988877642 2222222 223445667777778887888887877765555555443322
Q ss_pred CCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 007398 381 HMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIF 432 (605)
Q Consensus 381 g~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y 432 (605)
+.+ +.+-......++.+..+++.++..-..+..+.-.+.....
T Consensus 316 --------~~~-~~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~i 358 (415)
T PRK09664 316 --------IDN-SHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATI 358 (415)
T ss_pred --------CCC-ccccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 211 1111222344677777777777544444444433333333
|
|
| >PRK10483 tryptophan permease; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-15 Score=153.23 Aligned_cols=338 Identities=13% Similarity=0.069 Sum_probs=247.9
Q ss_pred cccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhC
Q 007398 70 MKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELG 148 (605)
Q Consensus 70 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g 148 (605)
.|++.+.++..++..|+.+|.|++..|-..+. .|-. +....+++++++...++.+.|...++|..-+....+++.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~--~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSG--AWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence 36678999999999999999999988876643 4543 78888999999999999999999999988889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHH
Q 007398 149 DFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRF 228 (605)
Q Consensus 149 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 228 (605)
|.+..+.+..+.+-......++..+.++.++..++..+ +.. + .....+.+.+++..+.+.|.|...|+
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~--~~i-----~-----~~~~~llF~~~~~~iv~~gt~~vd~~ 152 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMS--LNV-----P-----ARAAGFGFALLVAFVVWLSTKAVSRM 152 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcC--CCC-----c-----HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99888877777776666777778888888887764311 100 0 22567788888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCccC---CCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHH
Q 007398 229 NYIASIIHVIVILFIIIGGFANADTKNYKAFA---PFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGS 305 (605)
Q Consensus 229 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~ 305 (605)
++++...+++.++.++...+.+.+.++..... +..+...+.++...+++|.=...++.+.+..++-.|++.|+++.+
T Consensus 153 n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iG 232 (414)
T PRK10483 153 TAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYG 232 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHH
Confidence 99999999999887777777776655543211 122345778888899999888999999998886556999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccC----CCCh---HHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007398 306 MAVTTLAYCLLAIALCLMQPYYAIN----VDAP---FSVAFE-AVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHI 377 (605)
Q Consensus 306 ~~~~~v~y~l~~~~~~~~~~~~~~~----~~~p---~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 377 (605)
..+..++|++...+..+..|+++.. .++. +..... ..+.++...+..++..++..+|..+...+....+..+
T Consensus 233 s~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~ 312 (414)
T PRK10483 233 TLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADL 312 (414)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999977641 2222 223333 4566777777888888888888777766666665544
Q ss_pred HhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 007398 378 ARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFI 431 (605)
Q Consensus 378 Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 431 (605)
-|-+ +++.+ .....+++.+..+++.+...-..+..+.-.+....
T Consensus 313 ~k~~---------~~~~~-r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~ 356 (414)
T PRK10483 313 FGFD---------DSAMG-RFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAAT 356 (414)
T ss_pred hCCC---------Ccccc-ceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3321 11111 12234467777777777754444444443333333
|
|
| >PRK15132 tyrosine transporter TyrP; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-14 Score=147.23 Aligned_cols=343 Identities=14% Similarity=0.125 Sum_probs=250.0
Q ss_pred ChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChhHHH
Q 007398 75 TWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAF 153 (605)
Q Consensus 75 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~ 153 (605)
+.+...++..|+.+|.|++..|-.... +|.. +....++++.++...++.++|...+.|...+....+++.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~--~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG--VGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 567788899999999999998876543 5654 7777888888899999999999888887778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHH
Q 007398 154 VAAGNILLEYVIGGAAVARSWTSYFATLCNK----QPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFN 229 (605)
Q Consensus 154 ~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 229 (605)
+.+..|++.......++..+.++.+...++. +-+. ....+.+.++...+.+.|.|...|++
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~---------------~~~~l~F~~~~~~iv~~g~~~v~~~n 146 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSP---------------TAGVLLFTLVAGGVVCVGTSSVDLFN 146 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCCh---------------HHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999888888888888866666655432 1111 13455566666668888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHHHHHH
Q 007398 230 YIASIIHVIVILFIIIGGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVT 309 (605)
Q Consensus 230 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~ 309 (605)
+++...+++.++.+......+.+.+|+... +.+....+.++...+++|.=...++.+....++-+|++.|+++.+..+.
T Consensus 147 ~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~ 225 (403)
T PRK15132 147 RFLFSAKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIP 225 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 999999999888777777777777766421 2222237778888999999999999999999887899999999999999
Q ss_pred HHHHHHHHHHHHhcccccccC----CCC---hHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcC
Q 007398 310 TLAYCLLAIALCLMQPYYAIN----VDA---PFSVAFE-AVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTH 381 (605)
Q Consensus 310 ~v~y~l~~~~~~~~~~~~~~~----~~~---p~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg 381 (605)
.++|++...+..+..|.++.. ++. +..+..+ ..+.++...+..+...++..+|..+...+....+..+-+.+
T Consensus 226 li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~ 305 (403)
T PRK15132 226 LVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR 305 (403)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999987642 222 3434443 56778888888888888888888888777777776654322
Q ss_pred CCchhhhhhcCCCcchhHHHHHHHHHHHHHHHhh--cHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 007398 382 MMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFT--KLNVLSNLLSI-STLFIFMLVAVALLVRRYY 445 (605)
Q Consensus 382 ~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~--~~~~l~~~~~~-~~~~~y~~~~~~~~~~r~~ 445 (605)
. +++.+ .....++.+...++.+.. .|....+..+. ...+.++++.+.....|++
T Consensus 306 ~--------~~~~r--~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~ 362 (403)
T PRK15132 306 N--------TVGGR--LQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQ 362 (403)
T ss_pred c--------cccCC--chhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 11112 223445666666666553 34433444443 2333444454544445543
|
|
| >COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-13 Score=141.99 Aligned_cols=285 Identities=14% Similarity=0.079 Sum_probs=225.1
Q ss_pred ccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCC-chhhhhhhh
Q 007398 69 EMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAG-GSFAYLRVE 146 (605)
Q Consensus 69 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~G-G~y~~~~~~ 146 (605)
..+++-+.++.+...+++.+|+|++..|-... .+|-. .+...++++.++....+++.|...+.|+.. +.+.-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~--~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFG--GGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence 34566788899999999999999998886542 25655 778889999999999999999999999884 899999999
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhh
Q 007398 147 LGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSS 226 (605)
Q Consensus 147 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 226 (605)
+||.++++.+..+.+.......++....++.+...++..-.... ....+..+++...+..+.+.+.+...
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~----------~~r~~~~lif~~~~~~l~~~~~~~~l 151 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP----------LPRKLGSLIFALVLAFLSWLGTLAVL 151 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC----------cchHHHHHHHHHHHHHHHHhchhHHH
Confidence 99999999999999999999999999999998887764211110 01336677777777779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCcc--C-CCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCc-hhhHH
Q 007398 227 RFNYIASIIHVIVILFIIIGGFANADTKNYKAF--A-PFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKD-IPIGL 302 (605)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~--~-~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~-vp~ai 302 (605)
|.+.++...+++.++++......+.+.++.... . +..+..++.++..++++|.+......+..|+|+++++ ++|++
T Consensus 152 k~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~ 231 (415)
T COG0814 152 KITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAI 231 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHH
Confidence 999999999999998888888887766654322 2 3556778999999999999999999999999988877 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccc-------CCCChHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHH
Q 007398 303 VGSMAVTTLAYCLLAIALCLMQPYYAI-------NVDAPFSVAFE-AVGWDWAKYVVAFGALKGMTTVLLV 365 (605)
Q Consensus 303 ~~~~~~~~v~y~l~~~~~~~~~~~~~~-------~~~~p~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~ 365 (605)
..+..+..++|+.+.+....+.+.+.- .+......+.. ....+.......+....+..++..+
T Consensus 232 ~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlg 302 (415)
T COG0814 232 LIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLG 302 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999888887632 11223344333 3444555555566666655555333
|
|
| >PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-13 Score=140.69 Aligned_cols=285 Identities=16% Similarity=0.180 Sum_probs=239.8
Q ss_pred ccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChhHH
Q 007398 73 TLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVA 152 (605)
Q Consensus 73 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g 152 (605)
|++.+|...+.+..++|.++...|...+.. +| .+|++.+++++..+..++.+..+.+++|+.. .+++.++.+||..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~-~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~-l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQ-AG-DAWISVLLGGLIGLLLALLIYYLLKRFPGKT-LVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHhCcHHH
Confidence 578899999999999999999999998877 56 8999999999999999999999999999865 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHH
Q 007398 153 FVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIA 232 (605)
Q Consensus 153 ~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 232 (605)
.+.+..+.+.+....+.....+++.++..+-.+++.| .+...+++.+......|.+..+|...+.
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP~~---------------~i~~~~ll~~~y~a~~G~e~i~R~~~~~ 142 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLLPETPIW---------------VIILLFLLVAAYAARKGIEVIARVAEIL 142 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCHH---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999998776555544 6667777888889999999999999888
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHHHHHHHHH
Q 007398 233 SIIHVIVILFIIIGGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLA 312 (605)
Q Consensus 233 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~~v~ 312 (605)
....++.++.+........+.+|..|..+.|+...+.+.....+.|.|.|....+...+|||+ +..|....+..++.++
T Consensus 143 ~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~~~~~~~~ 221 (320)
T PF03845_consen 143 FPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIAILISGLF 221 (320)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHH
Confidence 888888888888778888888898899999999999999899999999999999999999974 5789999999999999
Q ss_pred HHHHHHHHHhcccccccCC-CChHHHHHHHhChh-HH---HHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007398 313 YCLLAIALCLMQPYYAINV-DAPFSVAFEAVGWD-WA---KYVVAFGALKGMTTVLLVSAVGQARYLTH 376 (605)
Q Consensus 313 y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~-~~---~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 376 (605)
|.+..+...++.+.+.... ..|..+..+....+ .. ..++....+.+.+......++++++.+..
T Consensus 222 ~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 222 LLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQ 290 (320)
T ss_pred HHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888876644 56888887744322 22 23444444555555556666666666553
|
A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane |
| >PRK13629 threonine/serine transporter TdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-12 Score=132.82 Aligned_cols=287 Identities=11% Similarity=0.067 Sum_probs=219.4
Q ss_pred HHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhcc-ccCCchhhhhhhhhChhHHHHHHHH
Q 007398 81 WFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEI-PVAGGSFAYLRVELGDFVAFVAAGN 158 (605)
Q Consensus 81 ~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~-P~~GG~y~~~~~~~g~~~g~~~g~~ 158 (605)
....|+.+|.|++..|-.... +|.. ..+..+++..++...+..+.|..... |+..+.-..+++.+||.++.+.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~--~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGF--GGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 566778899999998876532 5654 67778888888999999999999998 5556788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Q 007398 159 ILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVI 238 (605)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~ 238 (605)
|++.......++.....+.+.+.+.+.- .. +..+ ..+.++++++++..+...|.|...|++.++...+++
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql-~~----~~~~-----r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~ 173 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQL-GF----APLN-----RGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIA 173 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-Cc----CCcc-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9998888888887777777766432210 00 0000 236788888889999999999999999999999999
Q ss_pred HHHHHHHHhhhccccCCCCccC----CC----Ch-hHHHHHHHHHHHHhhhhhhHhhhhhh----hc------CCCCchh
Q 007398 239 VILFIIIGGFANADTKNYKAFA----PF----GT-RGVFKASAVLFFAYIGFDAVSTMAEE----TK------NPAKDIP 299 (605)
Q Consensus 239 ~~~~~~i~~~~~~~~~~~~~~~----~~----g~-~~~~~~~~~~~~~~~G~e~~~~~a~E----~k------~p~r~vp 299 (605)
.++.+.+..+.+.+.+|+.... +. +. ...+.++...+++|.=.-..+.++.. .+ +.+|+..
T Consensus 174 ~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~ 253 (443)
T PRK13629 174 SLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCS 253 (443)
T ss_pred HHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHH
Confidence 9999999999888877664211 11 11 23677788888888777776666655 42 2357889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccC----CCCh-HHHHHHHhCh---------hHHHHHHHHHHHHHHHHHHHH
Q 007398 300 IGLVGSMAVTTLAYCLLAIALCLMQPYYAIN----VDAP-FSVAFEAVGW---------DWAKYVVAFGALKGMTTVLLV 365 (605)
Q Consensus 300 ~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~----~~~p-~~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~ 365 (605)
|++..+..+..++|++..+.+.+..++++.. ++.+ +....+..++ ++...+..+...++..+|.++
T Consensus 254 rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlG 333 (443)
T PRK13629 254 QIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFG 333 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988853 3445 5555665554 667777788888888888888
Q ss_pred HhhhhhHHHHHHHh
Q 007398 366 SAVGQARYLTHIAR 379 (605)
Q Consensus 366 ~~~~~sR~l~a~Ar 379 (605)
...+..-.+..+.+
T Consensus 334 v~LGl~E~l~gl~~ 347 (443)
T PRK13629 334 HYLGTLEGLNGLIL 347 (443)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777777764
|
|
| >PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-09 Score=112.20 Aligned_cols=291 Identities=15% Similarity=0.188 Sum_probs=182.6
Q ss_pred cccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccc-------cCCch
Q 007398 68 HEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIP-------VAGGS 139 (605)
Q Consensus 68 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P-------~~GG~ 139 (605)
++-+++++.++.++.+++..+|.|-......+... |||+ .+|-|+. +++.+.+.++=.-|+.++. ..||.
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~-GGPGAiFWMWi~-a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP 90 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAI-GGPGAIFWMWIS-ALLGMATKYAEVTLAQKYREKDEDGEYRGGP 90 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHh-hchhHHHHHHHH-HHHHHHHHHHHHHHHHHheEECCCCCEeecH
Confidence 34456899999999999999999988887777766 9999 5666664 4555554444444444443 35889
Q ss_pred hhhhhhhhCh-hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHH
Q 007398 140 FAYLRVELGD-FVAFVAAGNILLEYVIG-GAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICIL 217 (605)
Q Consensus 140 y~~~~~~~g~-~~g~~~g~~~~~~~~~~-~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (605)
.+|.++.+|. +++.+.+......+... ........++.++..++.+ ....++++.+++.++
T Consensus 91 ~yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~-----------------~~~~gi~l~~l~~~v 153 (416)
T PF01235_consen 91 MYYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFGIP-----------------PWITGIILAILVALV 153 (416)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccc-----------------HHHHHHHHHHHHHHH
Confidence 9999999984 44545444433443332 3444444555555444332 125677777788888
Q ss_pred HHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhccccCCCC---------ccCCCChhHHHH----------HHHHHHHHh
Q 007398 218 AVVSTKGSSRFNYIASIIHVIVILFIIIGGFANADTKNYK---------AFAPFGTRGVFK----------ASAVLFFAY 278 (605)
Q Consensus 218 ~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~---------~~~~~g~~~~~~----------~~~~~~~~~ 278 (605)
.+-|+|..+++...+..++.+.-++..+..+... .++.. .|.+....|-.. |+.=.+|+-
T Consensus 154 i~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n-~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSN 232 (416)
T PF01235_consen 154 IFGGIKRIAKVSEKLVPFMAILYILGGLIIIIIN-IDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSN 232 (416)
T ss_pred HHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccC
Confidence 8899999999999888887776655444443321 11111 222322211111 222223443
Q ss_pred ---hhhhhHhhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccC--CCCh-HHHHHHHhChhHHHHHHH
Q 007398 279 ---IGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAIN--VDAP-FSVAFEAVGWDWAKYVVA 352 (605)
Q Consensus 279 ---~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~--~~~p-~~~~~~~~g~~~~~~~~~ 352 (605)
.|....+|-+.|+++|.|+--.+++-..+=+.++..++.+++...-.+.... ++.. ...+++..-++++..++.
T Consensus 233 EAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~ 312 (416)
T PF01235_consen 233 EAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVA 312 (416)
T ss_pred CCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHH
Confidence 5667778888899999888767766666555556666665554432222111 1122 345556545578888889
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007398 353 FGALKGMTTVLLVSAVGQARYLTHIA 378 (605)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~sR~l~a~A 378 (605)
+..++-.+++.+++.+..-|.+.-+-
T Consensus 313 i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 313 IALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 98888899999998888777766544
|
One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane |
| >KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6e-09 Score=108.80 Aligned_cols=348 Identities=14% Similarity=0.138 Sum_probs=213.1
Q ss_pred ccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCc-----hhhh
Q 007398 69 EMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGG-----SFAY 142 (605)
Q Consensus 69 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG-----~y~~ 142 (605)
..+|+.++++..+-.++.++|.|+...|- +..+ .|.. .+...++.+++.+.++..+.+.-...+.-.| .-+-
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~-A~~~-lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPY-ALAQ-LGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHH-HHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 34677999999999999999999998874 4444 7766 5888888999999999888888888887777 6667
Q ss_pred hhhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHH-Hhc
Q 007398 143 LRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILA-VVS 221 (605)
Q Consensus 143 ~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~g 221 (605)
++++||+..-.++++...+........+....++.+..++.....+.. . +. . . .+.+++.+++.... +..
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-~---l~-~---~-~f~iif~~i~~~~s~lp~ 181 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-S---LD-K---Q-YFIIIFGLIVLPLSQLPN 181 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-c---cc-c---e-ehhhhHHHHHHHHHHCCC
Confidence 788999877778888777777777778888888888887654321110 0 00 0 0 11122222222222 344
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhccccCCC--CccCCCChhHH-HHHHHHHHHHhhhhhhHhhhhhhhcCCCCch
Q 007398 222 TKGSSRFNYIASIIHVIVILFIIIGGFANADTKNY--KAFAPFGTRGV-FKASAVLFFAYIGFDAVSTMAEETKNPAKDI 298 (605)
Q Consensus 222 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~--~~~~~~g~~~~-~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~v 298 (605)
.....++.....+..+........++..++-..+. .+....+..+. +.++....|+|.|+-....+-..+|+|++ .
T Consensus 182 ~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f 260 (437)
T KOG1303|consen 182 FHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPK-F 260 (437)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchh-h
Confidence 45555566556666655555566666655422211 11111122222 67888889999999999999999999987 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHh-ChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007398 299 PIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAV-GWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHI 377 (605)
Q Consensus 299 p~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 377 (605)
+|+.+.+..+++++|+..++.-..+.+++..+ ++.... ...|.....++.+.+-.+++... .+.-++..
T Consensus 261 ~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~------~il~s~~~p~~~~~~ani~i~~h~i~s~~i----~a~pl~~~ 330 (437)
T KOG1303|consen 261 KKALLISYIIVTFLYFPVAIIGYWAFGDSVPD------NILLSLQPPTWLIALANILIVLHLIGSYQI----YAQPLFDV 330 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhccccch------hhhhcccCchhHHHHHHHHHHHHHhhhhhh----hhcchHHH
Confidence 99999999999999999998877766654321 112222 24455555555555555544332 22223332
Q ss_pred Hhc--CCCchhhhhhcCCCcchhHHHHH---HHHHHHHHHHhhcHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 007398 378 ART--HMMPPWLAQVHGKTGTPVNATIV---MLTATAIIAFFTKLNVLSNLLSIS--TLFIFMLVAVALLVR 442 (605)
Q Consensus 378 Ard--g~lP~~f~~~~~r~~~P~~ai~~---~~~~~~~~~~~~~~~~l~~~~~~~--~~~~y~~~~~~~~~~ 442 (605)
.+. +.-++.+.| | ..+.+.++= ......+-..+..|+.+.++.+.. ...++.++++.++..
T Consensus 331 ~E~~~~~~~~~~~~---~-~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~ 398 (437)
T KOG1303|consen 331 VEKLIGVKHPDFKK---R-SLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLI 398 (437)
T ss_pred HHHHhccCCccccc---c-ccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221 111111221 1 111111111 111111222234566666666644 456888888877765
|
|
| >PLN03074 auxin influx permease; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-08 Score=106.18 Aligned_cols=237 Identities=10% Similarity=0.079 Sum_probs=134.3
Q ss_pred cccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHH----hhhhhccccCCch-------
Q 007398 72 KTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCY----TEFAVEIPVAGGS------- 139 (605)
Q Consensus 72 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~----ael~s~~P~~GG~------- 139 (605)
+..+..+..+-.+...+|.|++..|.... + +|.. .++..++.++++...+..+ -|...+.|..+-.
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~-~-~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYSFS-Q-LGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHHHH-H-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 34566666666888889999998776553 3 6755 6666677776666655544 4566667664421
Q ss_pred -hhhhhhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcchhhccCCCCCcCchhHHHHHHHHHHHHH
Q 007398 140 -FAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQ-PEDFRIIVHSMPEDYGQLDPIAVGVSAVICIL 217 (605)
Q Consensus 140 -y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (605)
..-..+.+||.++.+......+........+....++.+..+.... ...| ..++..+.+.+.
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~-------------~~i~~~v~~~~~--- 185 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTW-------------TYIFGACCATTV--- 185 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeE-------------EeehHHHHHHHH---
Confidence 2223346898887766554444433333333333333222221110 0111 112222222221
Q ss_pred HHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCc
Q 007398 218 AVVSTKGSSRFNYIASIIHVIVILFIIIGGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKD 297 (605)
Q Consensus 218 ~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~ 297 (605)
-+...|...++..+.....+.....+.+......+......-.+.++..++.++...+|+|.|.-....+-.|||||+ +
T Consensus 186 ~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~ 264 (473)
T PLN03074 186 FIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-K 264 (473)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChh-c
Confidence 234455555555444443333322333333333332222111223455677777788999999999999999999995 6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 007398 298 IPIGLVGSMAVTTLAYCLLAIALCLMQPYY 327 (605)
Q Consensus 298 vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~ 327 (605)
.++....+...+..+|+...+..+...+++
T Consensus 265 F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 265 FKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred ccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 888888888888888888766665555544
|
|
| >TIGR00835 agcS amino acid carrier protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-08 Score=102.00 Aligned_cols=283 Identities=14% Similarity=0.204 Sum_probs=168.2
Q ss_pred cccChHHHHHHHhhhhccch-hhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhcc---cc----CCchhhh
Q 007398 72 KTLTWWDLIWFGIGAVIGAG-IFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEI---PV----AGGSFAY 142 (605)
Q Consensus 72 r~l~~~~~~~~~~~~~ig~g-i~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~---P~----~GG~y~~ 142 (605)
++++.++.++.+++..+|.| +...+. +... +||+ .+|-|+.+ ++...+.+.-.-++.++ |+ .||..+|
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~-Ai~~-GGpGAvFWMWI~a-llGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yy 121 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVAT-AIAI-GGPGAVFWMWVTA-FIGMATKFVESTLAQKYRERDADGVFRGGPMYY 121 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHH-HHHh-cCCCchHHHHHHH-HHHHHHHHHHHHHHHHeeeeCCCCCEecChHHH
Confidence 45999999999999999998 554444 4444 8998 56655544 33333333333333333 22 2455588
Q ss_pred hhhhhC-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHh
Q 007398 143 LRVELG-DFVAFVAAGNILLEY-VIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVV 220 (605)
Q Consensus 143 ~~~~~g-~~~g~~~g~~~~~~~-~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 220 (605)
.++.++ |++|.+.+.. .+.+ ...........++.++..++. +. ...++++.++...+..-
T Consensus 122 i~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~~--~~---------------~v~~i~l~~l~~~vi~G 183 (425)
T TIGR00835 122 IKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFNV--PK---------------LVTGIVLTVLTALIIFG 183 (425)
T ss_pred HHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcCC--cH---------------HHHHHHHHHHHHHHHhc
Confidence 888765 7888777766 4444 444566666667777654422 22 25666666666667667
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhccccCCCC---------ccCCCChhHHHH----------HHHHHHHHh---
Q 007398 221 STKGSSRFNYIASIIHVIVILFIIIGGFANADTKNYK---------AFAPFGTRGVFK----------ASAVLFFAY--- 278 (605)
Q Consensus 221 g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~---------~~~~~g~~~~~~----------~~~~~~~~~--- 278 (605)
|+|...++...+..+..+..+...+..+. .+.+|.. .|.+....|-.. |+.=..|+-
T Consensus 184 Gik~Ia~v~~~lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG 262 (425)
T TIGR00835 184 GLKRIAKISSVVVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAG 262 (425)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhccccc
Confidence 99999999999888877776544442222 2322221 222222211122 222233444
Q ss_pred hhhhhHhhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhccccc---ccCCCChHH-HHHHHhChhHHHHHHHHH
Q 007398 279 IGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYY---AINVDAPFS-VAFEAVGWDWAKYVVAFG 354 (605)
Q Consensus 279 ~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~---~~~~~~p~~-~~~~~~g~~~~~~~~~~~ 354 (605)
.|....+|-+.|+++|.|+--.+++-..+=+.++..++.+++...-.++ .+ ++..+. .+++..-++++..++.+.
T Consensus 263 ~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~-~g~~lt~~af~~~~g~~g~~~v~i~ 341 (425)
T TIGR00835 263 MGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGL-SGAQLTQQALSYGLGSFGAVFVAVA 341 (425)
T ss_pred cCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCC-cHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4666677778888999887666665554434555555555443322222 11 112222 345544445778888998
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHH
Q 007398 355 ALKGMTTVLLVSAVGQARYLTHI 377 (605)
Q Consensus 355 ~~~~~~~~~~~~~~~~sR~l~a~ 377 (605)
.++-.+++.+++.+..-+.+.-+
T Consensus 342 ~~lFaftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 342 LFLFAFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999998887776665544
|
Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+. |
| >KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.8e-08 Score=98.97 Aligned_cols=240 Identities=17% Similarity=0.156 Sum_probs=154.3
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HH-HHHHHHHHHHHH---HHHHHhhhhhcccc----------
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VV-LSFVVSGLSAML---SVFCYTEFAVEIPV---------- 135 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~-~~~il~~~~~~~---~a~~~ael~s~~P~---------- 135 (605)
++-.+..+.+.--+-.++|+|++..|... .. +|.. .+ ...+++.+...+ ..-|--+++++.-.
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AF-k~-sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAF-KN-SGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHH-Hh-cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 34477788888888889999999877654 44 6654 33 334444444333 33344556655311
Q ss_pred ---CCchhhhhhhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcchhhccCCCCCcCchhHHHHHHH
Q 007398 136 ---AGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNK-QPEDFRIIVHSMPEDYGQLDPIAVGVS 211 (605)
Q Consensus 136 ---~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (605)
.+| |.| -|.+||...+++-....+.+...++.+....++.+.+.++. ....+... +...+.+
T Consensus 122 ~a~~~~-~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~------------~~i~~~~ 187 (449)
T KOG1304|consen 122 SAMEGG-PGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVR------------LYILIQL 187 (449)
T ss_pred HHHcCC-cHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHH------------HHHHHHH
Confidence 122 335 77999999999999999999999999999999999998873 22222222 2223333
Q ss_pred HHHHHHH-HhcchhhhHHHHHHHHHHHHHHHHHHHHhhhccc-cCCCCccCCCChhHHHHHHHHHHHHhhhhhhHhhhhh
Q 007398 212 AVICILA-VVSTKGSSRFNYIASIIHVIVILFIIIGGFANAD-TKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAE 289 (605)
Q Consensus 212 ~~~~~i~-~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~ 289 (605)
.....+| ++..|...-+..+.-++.++.++++..-.+.... .+....+ .++.++...+..++|+|-|...+..+=+
T Consensus 188 ~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~--~~~~~~~lf~GtaifafEGig~VLPlEn 265 (449)
T KOG1304|consen 188 PPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAV--TGWSGLPLFFGTAIFAFEGIGMVLPLEN 265 (449)
T ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccc--cchhhhHHHHHHHHHHhccceEEEehhh
Confidence 3333333 3344444444444444444444333333322222 1222222 2367788889999999999999999999
Q ss_pred hhcCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 007398 290 ETKNPAKDIP---IGLVGSMAVTTLAYCLLAIALCLMQPYYAI 329 (605)
Q Consensus 290 E~k~p~r~vp---~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~ 329 (605)
+||+|+ +.| ..+-.++.++.++|+.....-+...++|..
T Consensus 266 ~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~ 307 (449)
T KOG1304|consen 266 SMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVK 307 (449)
T ss_pred cccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999995 577 899999999999999888877666666543
|
|
| >COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-07 Score=93.95 Aligned_cols=290 Identities=17% Similarity=0.220 Sum_probs=191.0
Q ss_pred ccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccc-------cCCchh
Q 007398 69 EMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIP-------VAGGSF 140 (605)
Q Consensus 69 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P-------~~GG~y 140 (605)
+-++.++.++.++.+++..+|+|=......+... +||+ .+|-|+. +++.+.+.+.=+-|+..|. -.||+.
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~-GGPGAvFWMWi~-Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~ 135 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIAL-GGPGAVFWMWIV-ALFGMATKFAESTLAQKYRVKDKDGEYRGGPA 135 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHc-CCCccHHHHHHH-HHHHHHHHHHHHHHHhheeEeCCCCCCcCChH
Confidence 3467799999999999999999988877777766 9998 6777765 4445555555455666554 258999
Q ss_pred hhhhhhhC-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHH
Q 007398 141 AYLRVELG-DFVAFVAAGNILLEYV-IGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILA 218 (605)
Q Consensus 141 ~~~~~~~g-~~~g~~~g~~~~~~~~-~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (605)
+|..+.+| |+.|.+.+....+++. ..+...+...++.++..++.+ ..+.++++.++...+.
T Consensus 136 yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~~-----------------~~~~gi~la~l~~~VI 198 (452)
T COG1115 136 YYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGIP-----------------PLVTGIVLALLVALVI 198 (452)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHHHH
Confidence 99999998 6777777766666665 577777888888888877653 1267888888888889
Q ss_pred HhcchhhhHHHHHHHHHHHHHHHHHHHHhhhccccCCCC---------ccCCC----Chh------HHHHHHHHHHHHh-
Q 007398 219 VVSTKGSSRFNYIASIIHVIVILFIIIGGFANADTKNYK---------AFAPF----GTR------GVFKASAVLFFAY- 278 (605)
Q Consensus 219 ~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~---------~~~~~----g~~------~~~~~~~~~~~~~- 278 (605)
.-|+|..+++.......+-+.-++..+..+.. +.++.. .|.+. |.. .+..|+.=..|+-
T Consensus 199 ~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~-n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNE 277 (452)
T COG1115 199 FGGIKRIAKVSSKVVPFMAILYVLVALVIIVL-NISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNE 277 (452)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 99999999999888777666544333332221 111110 12222 111 1222333334554
Q ss_pred --hhhhhHhhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccC--CCChHH-HHHHHhChhHHHHHHHH
Q 007398 279 --IGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAIN--VDAPFS-VAFEAVGWDWAKYVVAF 353 (605)
Q Consensus 279 --~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~--~~~p~~-~~~~~~g~~~~~~~~~~ 353 (605)
.|....++.+.+++||.|+--..++...+=..++...+.+.+...-.++... ++..+. .+++..-++++..++.+
T Consensus 278 AGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i 357 (452)
T COG1115 278 AGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAI 357 (452)
T ss_pred ccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHH
Confidence 4555667777888899877655555444435555555555554433332222 233333 44566666789999999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH
Q 007398 354 GALKGMTTVLLVSAVGQARYLTHIA 378 (605)
Q Consensus 354 ~~~~~~~~~~~~~~~~~sR~l~a~A 378 (605)
..++-.+++.+++.+..-|.+.-+-
T Consensus 358 ~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 358 ALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998887777665443
|
|
| >PTZ00206 amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-07 Score=100.84 Aligned_cols=244 Identities=14% Similarity=0.094 Sum_probs=150.8
Q ss_pred ChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChhHHH
Q 007398 75 TWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAF 153 (605)
Q Consensus 75 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~ 153 (605)
|..+..+-.+.+++|+|++..|... .. +|.. .++..++.++++......+.+.+.+ ++.-...+-+++.+||...+
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~Af-~~-~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSAA-NS-SGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHH-HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHHH
Confidence 5567777777888999999877654 33 6654 6666666677766666666666655 33345666677789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHH
Q 007398 154 VAAGNILLEYVIGGAAVARSWTSYFATLCNKQP-EDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIA 232 (605)
Q Consensus 154 ~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 232 (605)
++.+...+.....+.++....++.+...+.... +.+... ..... .....+.+++.+-+.....++..+++..+.
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~---~~~~r--~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~ 212 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQ---KSGNR--LLTSLMWLCFMLPLVIPRHIDSLRYVSTIA 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhh---ccCcE--EeeeehhhhHhhhcccccchHHHHHHHHHH
Confidence 999988888888888888888988887764321 111000 00000 001111111112222244555555554443
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCC-----c-------cCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCC-Cchh
Q 007398 233 SIIHVIVILFIIIGGFANADTKNYK-----A-------FAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPA-KDIP 299 (605)
Q Consensus 233 ~~~~l~~~~~~~i~~~~~~~~~~~~-----~-------~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~-r~vp 299 (605)
....+...+.+++.......+++.. . .++. ......++....|+|.+.......-+|+|||+ |+..
T Consensus 213 ~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~ 291 (467)
T PTZ00206 213 VSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNS-GNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFV 291 (467)
T ss_pred HHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecC-chHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHH
Confidence 3222222222222222221111110 0 1111 13467788899999999999999999999974 6788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccc
Q 007398 300 IGLVGSMAVTTLAYCLLAIALCLMQPYY 327 (605)
Q Consensus 300 ~ai~~~~~~~~v~y~l~~~~~~~~~~~~ 327 (605)
+.+..++.++.++|.+..+.-+...+.+
T Consensus 292 ~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 292 LASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 8999999999999999988877766654
|
|
| >PRK11375 allantoin permease; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-06 Score=93.08 Aligned_cols=326 Identities=10% Similarity=0.001 Sum_probs=161.2
Q ss_pred cccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch---HHHHHHHHHHHHHHHHHHHhhhhhccccCC-chhh
Q 007398 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA---VVLSFVVSGLSAMLSVFCYTEFAVEIPVAG-GSFA 141 (605)
Q Consensus 66 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~il~~~~~~~~a~~~ael~s~~P~~G-G~y~ 141 (605)
..++.+|+.++++.+.+=++..+....+...+.... .|-. ++++.+++.++....... .+..-++.| +...
T Consensus 19 pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~--~GLs~~~ai~ai~lG~~i~~~~~~l---~g~~G~~~Gl~~~v 93 (484)
T PRK11375 19 PKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI--LGLSTFSIMLAIILSAFFIAAVMVL---NGAAGSKYGVPFAM 93 (484)
T ss_pred cCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHHHHHHHH---hcccccccCCChhH
Confidence 344457889999998888887765444422333322 2332 455555554444333333 444444455 5677
Q ss_pred hhhhhhChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHhcCCCCcchhhccCCCCCcCc-hhHHHHHHHHHHH
Q 007398 142 YLRVELGDFVAFVAAGNIL-LEYVIGGAAVARSWTSYFA----TLCNKQPEDFRIIVHSMPEDYGQ-LDPIAVGVSAVIC 215 (605)
Q Consensus 142 ~~~~~~g~~~g~~~g~~~~-~~~~~~~a~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 215 (605)
..|..||...+.+.+.... +..+...+......++.+. .+++... ......+. .+... ..+..+++.++.+
T Consensus 94 ~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~-~~~~~~~~--~g~~~~~~i~~~i~~~l~~ 170 (484)
T PRK11375 94 ILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFL-TLGGDFTL--LGLSLPGLITFLIFWLVNV 170 (484)
T ss_pred hHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cccccccc--CCCcHHHHHHHHHHHHHHH
Confidence 8888999877676666552 3444444444444444444 3332100 00000000 00000 1233445556666
Q ss_pred HHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccCCC-------ChhHHHHHHHHHHHHhh-hhhhHhhh
Q 007398 216 ILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFANADTKNYKAFAPF-------GTRGVFKASAVLFFAYI-GFDAVSTM 287 (605)
Q Consensus 216 ~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~-G~e~~~~~ 287 (605)
.+.+.|.|...+++.+...+.++..+.+.+..+...+.+......+. ....+..++...+-++. +.-..+.+
T Consensus 171 ~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~ 250 (484)
T PRK11375 171 GIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDF 250 (484)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccch
Confidence 67788999999999988888766655555444433332211111111 12334444433333333 33456777
Q ss_pred hhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHH-hcccccccCCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHH-H
Q 007398 288 AEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALC-LMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLL-V 365 (605)
Q Consensus 288 a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~ 365 (605)
+...|++ |+.-++...+..+...+..+..+... .....-.....+| .+++...+...+..+..+..+++..++.. .
T Consensus 251 tRy~k~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp-~~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~ 328 (484)
T PRK11375 251 TQNAHSF-RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNV-LDIVQRWDSLFASFFAVLVILMTTISTNATG 328 (484)
T ss_pred hcccCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 8888886 45556666666555544332222221 1111101122334 34444444444545555666666666543 3
Q ss_pred HhhhhhHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh
Q 007398 366 SAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF 414 (605)
Q Consensus 366 ~~~~~sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~ 414 (605)
.++..+ ++-.+.+||.+.+ | ++.++.++++.++...
T Consensus 329 N~ys~~-----~~l~~l~pk~i~~---~-----~~~~i~~iig~~~~pw 364 (484)
T PRK11375 329 NIIPAG-----YQIAALAPTKLTY---K-----NGVLIASIISLLICPW 364 (484)
T ss_pred hcccHH-----HHHHHhCcCccch---h-----hHHHHHHHHHHHhccH
Confidence 444443 3334677754322 2 3555565565554443
|
|
| >PF13906 AA_permease_C: C-terminus of AA_permease | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.9e-10 Score=79.21 Aligned_cols=51 Identities=43% Similarity=0.901 Sum_probs=49.4
Q ss_pred cccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhccc
Q 007398 513 WGVPLVPWLPSASIAINIFLLGSIDRASFARFGVWTVILLLYYIFFGLHAS 563 (605)
Q Consensus 513 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 563 (605)
||+|.+|++|+++++.|++++.+++..+|+.+++|+++|++.|+.||+||+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 789999999999999999999999999999999999999999999999984
|
|
| >COG3949 Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-06 Score=84.45 Aligned_cols=266 Identities=15% Similarity=0.099 Sum_probs=164.2
Q ss_pred HHHHhhhhccchhhhcchHhHhhhcCc---hHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChhHHHHHH
Q 007398 80 IWFGIGAVIGAGIFVLTGQEARQEAGP---AVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAA 156 (605)
Q Consensus 80 ~~~~~~~~ig~gi~~~~~~~~~~~~G~---~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~~~g 156 (605)
.+..++.++|.|.- +|+-.-+.-|+ .+.++.++++++....+....|+++++. +...-.+.++.+||.++-+.-
T Consensus 9 ~f~~ig~~vGAGfA--sGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~-a~~y~~~~~~v~~~~~~ki~d 85 (349)
T COG3949 9 AFAFIGTVVGAGFA--SGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFN-ATSYREILKYVSGPKFAKIID 85 (349)
T ss_pred HHHHHHHhhccccc--chHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHhhHHHHHHHH
Confidence 34455677888853 34443344444 3889999999999999999999999986 334777889999999987665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhc-chhhhHHHHHHHHH
Q 007398 157 GNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVS-TKGSSRFNYIASII 235 (605)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g-~~~~~~~~~~~~~~ 235 (605)
....+.-...+.....+.++.+++.++.+ .| +-+++++.+......++ ++..-+++.+.+.+
T Consensus 86 ~~iif~lf~~~vVM~AGags~~~e~~~lP--~w---------------iGali~i~~v~i~lfl~~vegi~tvn~iI~P~ 148 (349)
T COG3949 86 IIIIFFLFSTAVVMLAGAGSLLEEMFGLP--YW---------------IGALIIILLVLILLFLGRVEGIITVNGIITPF 148 (349)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHhCcc--HH---------------HHHHHHHHHHHHHHHHhcccceeeeheeHHHH
Confidence 54444433333333444445777777652 22 33356666666666666 77777777777666
Q ss_pred HHHHHHHHHHHhhhc--cccCCCCccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHHHHHHHHHH
Q 007398 236 HVIVILFIIIGGFAN--ADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAY 313 (605)
Q Consensus 236 ~l~~~~~~~i~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y 313 (605)
.++.+.......... .+..+...-...+|..-..+ ..+.--.........+++|+|++ |+.-+|-+.+-++.+++.
T Consensus 149 LIi~l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~~~~-Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~ 226 (349)
T COG3949 149 LIIILVLVTLSFQFTNLGNAAQIVLTKQGNWKASAVG-YGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLL 226 (349)
T ss_pred HHHHHHHHHHHHHHhhccchhhhcCCcCCChHHHHHh-hhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHHHHH
Confidence 555532222222111 11111111112233322221 11111223445566778999996 677788888888888888
Q ss_pred HHHHHHHHhcccccccCCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007398 314 CLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVG 369 (605)
Q Consensus 314 ~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (605)
.+....+....| +..+.+-|..++++..+ +....++.+.......++..+.+++
T Consensus 227 ~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 227 FLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred HHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877766544 33355779999999877 5555666677777777776665544
|
|
| >COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-05 Score=80.88 Aligned_cols=234 Identities=8% Similarity=0.026 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007398 108 VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPE 187 (605)
Q Consensus 108 ~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~ 187 (605)
++++.+++-++........++++.+.... +..-.|..||...+.+.....++.++...+.+....++..... ..-+
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~--~~~~ 129 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG--TGLP 129 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC--CCCc
Confidence 45555555555555555555555554332 4455567899999988888888887777777766665552221 1111
Q ss_pred cchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhcccc-CCCCccCCCChhH
Q 007398 188 DFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFANADT-KNYKAFAPFGTRG 266 (605)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~~~~~~~g~~~ 266 (605)
.....++..++.+...++|.|...+++++.....++..+......+-..+. +....-.|.++..
T Consensus 130 ---------------~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (442)
T COG1457 130 ---------------VWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLS 194 (442)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchh
Confidence 114455555667778899999999999999998888776666655542222 2111122455666
Q ss_pred HHHHHHHHHHHhhhhhh-HhhhhhhhcCCCCchhhHHHHHHHHHHH-----HHHHHHHHHHhcccccccCCCChHHHHHH
Q 007398 267 VFKASAVLFFAYIGFDA-VSTMAEETKNPAKDIPIGLVGSMAVTTL-----AYCLLAIALCLMQPYYAINVDAPFSVAFE 340 (605)
Q Consensus 267 ~~~~~~~~~~~~~G~e~-~~~~a~E~k~p~r~vp~ai~~~~~~~~v-----~y~l~~~~~~~~~~~~~~~~~~p~~~~~~ 340 (605)
+..++..++-.+..|-. ++..+.-.|+|+ |+..+....+... .+++-.. .....+.++ +..+...
T Consensus 195 fl~a~slv~g~~~sw~~~~aDysRy~~~~t---~~~~~~~~~~G~~l~~~~~~ilGa~-~a~a~g~~~-----~~~~~~~ 265 (442)
T COG1457 195 FLSALSLVIGSFASWGPYAADYSRYAPSPT---PSKAFLAAVLGFFLGTSFMMILGAA-LAAAAGNAD-----SIADVML 265 (442)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhcCCCc---hHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCc-----hHHHHHH
Confidence 77777666655544433 466666666654 1222222222222 2222222 222222211 4555555
Q ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007398 341 AVGWDWAKYVVAFGALKGMTTVLLVSAVGQA 371 (605)
Q Consensus 341 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 371 (605)
..|+ +.....+.+.++..++....+++++
T Consensus 266 ~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ 294 (442)
T COG1457 266 GLGG--FGLPAILILVLGTVTTNANNLYSAG 294 (442)
T ss_pred hccc--HHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 5664 4445555666666655444444443
|
|
| >PRK11017 codB cytosine permease; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.1e-05 Score=80.75 Aligned_cols=218 Identities=8% Similarity=-0.015 Sum_probs=116.0
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCC-chhhhhhhhhC
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAG-GSFAYLRVELG 148 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~G-G~y~~~~~~~g 148 (605)
+|+ +.++....-++..+....+...+.. ...-+.. ++++.+++.++........+ ..-|+.| ......|..||
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~~~~g~~l-~~GLs~~~ai~aiilG~~i~~~~~~l~~---~~G~k~G~~~~v~sR~~FG 82 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSASMWAGGTL-GTGLSFVDFLLAVLIGNLLLGIYTAALG---YIGAKTGLSTHLLARFSFG 82 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHhccCcCHHHHHHHHhc
Confidence 455 7788766655544433223222222 1112222 55666665554444333333 3344455 46667788999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHH
Q 007398 149 DFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRF 228 (605)
Q Consensus 149 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 228 (605)
...+.+.+....+..+...+.+....+..+...++.+.. ...+++.++.......|.|...++
T Consensus 83 ~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~~~~-----------------~~~~i~~~l~~~~~~~G~~~i~~~ 145 (404)
T PRK11017 83 EKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGLDIN-----------------LLIVLSGLLMTVTAYFGISALTIL 145 (404)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888887777766666666666666655555443210 223334445556667889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc-cCCCCccCCCChhHHHHHHHHHHHH-hhhhhhHhhhhhhhcCCCCchhhHHHHHH
Q 007398 229 NYIASIIHVIVILFIIIGGFANAD-TKNYKAFAPFGTRGVFKASAVLFFA-YIGFDAVSTMAEETKNPAKDIPIGLVGSM 306 (605)
Q Consensus 229 ~~~~~~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-~~G~e~~~~~a~E~k~p~r~vp~ai~~~~ 306 (605)
+++......+..+...+..+...+ .+......+.+...+..++...+-. ..+.-..+.++...|+++ +.-.+...+.
T Consensus 146 ~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~-~~~~~~~lg~ 224 (404)
T PRK11017 146 SRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAK-IAVLATMVAF 224 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCcc-ceeehhHHHH
Confidence 998877766655444433332221 1111111122223344444433322 234455677888888764 4335555555
Q ss_pred HHHHH
Q 007398 307 AVTTL 311 (605)
Q Consensus 307 ~~~~v 311 (605)
.+..+
T Consensus 225 ~i~~~ 229 (404)
T PRK11017 225 FLGNS 229 (404)
T ss_pred HHHHH
Confidence 44433
|
|
| >COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00022 Score=74.40 Aligned_cols=313 Identities=11% Similarity=0.049 Sum_probs=162.3
Q ss_pred cccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhh
Q 007398 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLR 144 (605)
Q Consensus 66 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 144 (605)
..++.+|+.++++.+.+=.+.+.-.+-+...+.......++. .+++.+++-++.......-+..++++-- ..-...|
T Consensus 33 P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gI--pFpv~~R 110 (497)
T COG1953 33 PTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGI--PFPVLSR 110 (497)
T ss_pred CCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCC--CchHHHH
Confidence 445568999999999888887766665555555555533444 7777777766666555554444444421 2344566
Q ss_pred hhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhc--cCCCCCcCchhHHHHHHHHHHHHHHHhcc
Q 007398 145 VELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIV--HSMPEDYGQLDPIAVGVSAVICILAVVST 222 (605)
Q Consensus 145 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 222 (605)
..||-+.+-+-...-.+.-+..-...+...+..++.++..--+.++... .+.........+..+++-++-..+...|.
T Consensus 111 aSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~ 190 (497)
T COG1953 111 ASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGM 190 (497)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCH
Confidence 7787665554444443333333344444444444433322111111110 00111111122334444444555667899
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccCC----C---ChhHHHHHHHHHHHHh-hhhhhHhhhhhhhcCC
Q 007398 223 KGSSRFNYIASIIHVIVILFIIIGGFANADTKNYKAFAP----F---GTRGVFKASAVLFFAY-IGFDAVSTMAEETKNP 294 (605)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~----~---g~~~~~~~~~~~~~~~-~G~e~~~~~a~E~k~p 294 (605)
+...|++.+......+..+.+.+-...+.+..+.....| . .+..++.+.....-.+ +..-.....+.+.|+|
T Consensus 191 ~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s~ 270 (497)
T COG1953 191 ESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKSQ 270 (497)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCCh
Confidence 999999999999998888888887777665432221111 1 1122333322211111 2334456677777775
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCC---CChHHHHHHHhChhHHHH-HHHHHHHHHHHHHHHHHhhhh
Q 007398 295 AKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINV---DAPFSVAFEAVGWDWAKY-VVAFGALKGMTTVLLVSAVGQ 370 (605)
Q Consensus 295 ~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~---~~p~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 370 (605)
|+.-++-.+++-+...++.+..+..... .+.+.. -+| .|+..+........ +..+..+++++++..+.-..+
T Consensus 271 -~~~~~gq~~gLPv~~~l~~ligvv~tsa--~~~lyG~~~w~P-~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vs 346 (497)
T COG1953 271 -KAQIWGQLVGLPVNFALFSLIGVVVTSA--SYILYGETIWDP-LDIVARFLSGFYAAFLAGLTFAVATISTNIAANIVS 346 (497)
T ss_pred -hhhhhccchhhhHHHHHHHHHHhhHHHH--HHHhhCcccCCH-HHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCC
Confidence 4445555555555555544444433221 111211 134 45555555444444 666666677776655443333
Q ss_pred hHHHHHHHhcCCCchhhh
Q 007398 371 ARYLTHIARTHMMPPWLA 388 (605)
Q Consensus 371 sR~l~a~Ardg~lP~~f~ 388 (605)
+-. . -.+.+||...
T Consensus 347 p~~--D--~s~l~Pk~in 360 (497)
T COG1953 347 PGY--D--LSALFPKYIN 360 (497)
T ss_pred hHH--H--HHHhcccccc
Confidence 222 1 1256777665
|
|
| >PRK09442 panF sodium/panthothenate symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00041 Score=75.27 Aligned_cols=282 Identities=13% Similarity=0.056 Sum_probs=150.4
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHH---HHHHHHHHHHHHHHhhhhhccccCCchhhhhhhh
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSF---VVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVE 146 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~---il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 146 (605)
.|+++++-..+...++.++.+.+......+.. .|.. .+.+. ....+.....+.-+.++.++. +.-..++|.++.
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYK-YGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 58889887777776777665555544333333 3433 22111 111111222333445555554 344688899999
Q ss_pred hChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhh
Q 007398 147 LGDF-VAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGS 225 (605)
Q Consensus 147 ~g~~-~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 225 (605)
||+. ...+.+....+..+...+....+.+..++..++.+. + ..+.+..++.+....+-|.|..
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi~~--~--------------~~iii~~~iv~iYt~~GGl~av 181 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGISY--E--------------TGLLIFGITVALYTAFGGFRAV 181 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--H--------------HHHHHHHHHHHHHHHhccHHHH
Confidence 9854 566666666666666677777788888888776432 1 0122222333445556788888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcc-------------ccCCCCccCCCChh--HHHHHH-HHHHHHhhhhhhHhhhhh
Q 007398 226 SRFNYIASIIHVIVILFIIIGGFANA-------------DTKNYKAFAPFGTR--GVFKAS-AVLFFAYIGFDAVSTMAE 289 (605)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~i~~~~~~-------------~~~~~~~~~~~g~~--~~~~~~-~~~~~~~~G~e~~~~~a~ 289 (605)
.+.+.+-.++.++..+++.+..+... +++.+.+..+.++. .....+ ........+.....+-.=
T Consensus 182 ~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~ 261 (483)
T PRK09442 182 VLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCM 261 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88887777766665544433322211 11111111111211 111111 111222333333333444
Q ss_pred hhcCCCCchhhHHHHHHHHHHHHHHHHHHHH-Hh--cccccccCCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHH
Q 007398 290 ETKNPAKDIPIGLVGSMAVTTLAYCLLAIAL-CL--MQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVS 366 (605)
Q Consensus 290 E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~-~~--~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 366 (605)
..||+ |+..|+.+++.+...++++...+.- .. ..|. ..+.+..++....+..++++..++..+.+.+.+++..+.
T Consensus 262 aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~ 339 (483)
T PRK09442 262 SYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQ 339 (483)
T ss_pred HcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46775 6788888888766666555443321 11 1232 223455566666666778887777778788888777777
Q ss_pred hhhhhH
Q 007398 367 AVGQAR 372 (605)
Q Consensus 367 ~~~~sR 372 (605)
+.+.+=
T Consensus 340 l~~~ss 345 (483)
T PRK09442 340 LLQSSS 345 (483)
T ss_pred HHHHHH
Confidence 665544
|
|
| >PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.4e-09 Score=113.83 Aligned_cols=242 Identities=17% Similarity=0.183 Sum_probs=152.7
Q ss_pred cccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccc---cCCchhhhhhhhh
Q 007398 72 KTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIP---VAGGSFAYLRVEL 147 (605)
Q Consensus 72 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P---~~GG~y~~~~~~~ 147 (605)
|+-+.++..+..++.++|.|++..|-... + +|.. .++..++.++++......+.|.....+ +.-...+-+++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~-~-~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFA-Q-SGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHH-H-hhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 46789999999999999999998877654 3 5655 777788888888888889999988775 3334444557899
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhH
Q 007398 148 GDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSR 227 (605)
Q Consensus 148 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 227 (605)
||..++++.....+........+....++.+..+++...+..... ...+.++..++...+.. .|....
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~----------~~~~~~i~~~i~~pls~--~~~l~~ 146 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFIS----------RYVWIIIFALIVLPLSF--LKNLKS 146 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccccccc----------ccccccccccccccccc--cchhhH
Confidence 999988888877777666666666666666666554321110000 00111122222222221 233333
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhh-c--cccCCCC---ccCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCC--c
Q 007398 228 FNYIASIIHVIVIL--FIIIGGFA-N--ADTKNYK---AFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAK--D 297 (605)
Q Consensus 228 ~~~~~~~~~l~~~~--~~~i~~~~-~--~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r--~ 297 (605)
+........+..+. .+.+.... . .+..+.. .+.+..+.++..++....++|.+......+.+|+|+|+| +
T Consensus 147 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~ 226 (409)
T PF01490_consen 147 LRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKK 226 (409)
T ss_pred HHHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccc
Confidence 33222222222211 11111111 1 1111111 112344567889999999999999999999999999865 4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 007398 298 IPIGLVGSMAVTTLAYCLLAIALCLMQPYY 327 (605)
Q Consensus 298 vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~ 327 (605)
+.|+...+..++.++|.+..+......+++
T Consensus 227 ~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~ 256 (409)
T PF01490_consen 227 MKKVLSISMIICFIIYLLFGIFGYLAFGDS 256 (409)
T ss_pred cceeeeehhhhhhHHhhhhhhcccceeeee
Confidence 559999999999999999988876665543
|
UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified. |
| >TIGR00800 ncs1 NCS1 nucleoside transporter family | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00017 Score=77.21 Aligned_cols=242 Identities=12% Similarity=0.051 Sum_probs=121.5
Q ss_pred ccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCc--h-HHHHHHHHHHHHHHHHHHHhhhhhccccCC-chhhh
Q 007398 67 EHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGP--A-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAG-GSFAY 142 (605)
Q Consensus 67 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~--~-~~~~~il~~~~~~~~a~~~ael~s~~P~~G-G~y~~ 142 (605)
.++.+|+.++++.+.+=++..+...-+..-.... . .|- . ++++.+++.++........+.. -|+.| .....
T Consensus 7 vp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~-~-~GLs~~~ailai~lG~~i~~~~~~l~~~~---G~r~Gl~~~v~ 81 (442)
T TIGR00800 7 VKEEERTWSFLNYFSLWLGAAFNIATWAIGALGL-P-LGLSWWQSVIAIILGNLLGGIFVALNSRA---GAKYGLPFPVL 81 (442)
T ss_pred CCcccCCccHHHHHHHHHHHhhhHHHHHHHHHHH-h-cCCcHHHHHHHHHHHHHHHHHHHHHhhhh---HHHhCCCcchh
Confidence 3445677899999888887766543333322222 1 232 2 5555555544444433333333 44444 46777
Q ss_pred hhhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHH-HHHHH-HHHHh
Q 007398 143 LRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGV-SAVIC-ILAVV 220 (605)
Q Consensus 143 ~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~i~~~ 220 (605)
.|..||...+.+.+...++..+...+..+...++.++.++..-.+.+... +.+......+..++ ..+.. .....
T Consensus 82 sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~----~~~~t~~~~~~~~i~~~l~~~~~~~~ 157 (442)
T TIGR00800 82 SRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHL----GNGMTTLELICFIIFWALVLVFLFFF 157 (442)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccc----CCcccHHHHHHHHHHHHHHHHHHHcC
Confidence 88899999888888888888777778887777766655543211110000 00000011222222 22222 23455
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhccccCCCC-c----cCCCChhHHHHHHHHHHHH-hhhhhhHhhhhhhhcCC
Q 007398 221 STKGSSRFNYIASIIHVIVILFIIIGGFANADTKNYK-A----FAPFGTRGVFKASAVLFFA-YIGFDAVSTMAEETKNP 294 (605)
Q Consensus 221 g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~-~----~~~~g~~~~~~~~~~~~~~-~~G~e~~~~~a~E~k~p 294 (605)
|.|...+.+.......++.++.++.......+..+.. . ..+.+...++.++....-. ....-.++.++...|++
T Consensus 158 g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~ 237 (442)
T TIGR00800 158 GYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSK 237 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCc
Confidence 6666555555555444444433332222111111111 0 1122334455555443322 23444577888888886
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHH
Q 007398 295 AKDIPIGLVGSMAVTTLAYCLLAI 318 (605)
Q Consensus 295 ~r~vp~ai~~~~~~~~v~y~l~~~ 318 (605)
|+..++...+.....+...+..+
T Consensus 238 -~~~~~~~~~~~~~~~~~~~~~g~ 260 (442)
T TIGR00800 238 -KTAIWGQFLALPGGFTLTCFFGI 260 (442)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666555554444333
|
The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism. |
| >TIGR02119 panF sodium/pantothenate symporter | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0021 Score=69.49 Aligned_cols=284 Identities=10% Similarity=0.013 Sum_probs=151.7
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHH---HHHHHHHHHHHHHHhhhhhccccCCchhhhhhhh
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSF---VVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVE 146 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~---il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 146 (605)
.|+++++......+++.++.+.+......... .|.. ..+.+ ..+.++....+.-+.++.++. +.-..++|.++.
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 58899998888888887776666544433333 3432 11111 111111111222334444443 344688999999
Q ss_pred hCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhh
Q 007398 147 LGD-FVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGS 225 (605)
Q Consensus 147 ~g~-~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 225 (605)
+|+ ....+++....+...........+.+..++..++.+. + ..+.+..++.+.....-|.|..
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~~--~--------------~~iii~~~iv~iYt~~GG~~av 180 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGLSY--L--------------TALFIFSSSVLIYTTFGGFRAV 180 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--H--------------HHHHHHHHHHHHHHHhhhHHHH
Confidence 994 4556666666665555566667777777777776421 1 0122222334445556788888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcc-cc------------CCCCccCCCChh--HHHHHH-HHHHHHhhhhhhHhhhhh
Q 007398 226 SRFNYIASIIHVIVILFIIIGGFANA-DT------------KNYKAFAPFGTR--GVFKAS-AVLFFAYIGFDAVSTMAE 289 (605)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~i~~~~~~-~~------------~~~~~~~~~g~~--~~~~~~-~~~~~~~~G~e~~~~~a~ 289 (605)
.+.+.+-.++.++..+++.+..+... +. +...++.+.++. .+...+ ....+...+.....+-.-
T Consensus 181 ~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~ 260 (471)
T TIGR02119 181 ALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCM 260 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHH
Confidence 88887777766665544444333321 11 111111112211 111111 111222233333344555
Q ss_pred hhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHh--cccccccCCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHh
Q 007398 290 ETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCL--MQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSA 367 (605)
Q Consensus 290 E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~--~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 367 (605)
..||+ |+..|+..++.++...++....+.-.. ...++..+++..++....+..+++..-++..+++.+.+++..+.+
T Consensus 261 aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~l 339 (471)
T TIGR02119 261 SYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSLL 339 (471)
T ss_pred hcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56774 788899988877666655444333211 112222234555666666666677777777777777787777776
Q ss_pred hhhhHH
Q 007398 368 VGQARY 373 (605)
Q Consensus 368 ~~~sR~ 373 (605)
.+.+-.
T Consensus 340 ~~~ss~ 345 (471)
T TIGR02119 340 LQSSST 345 (471)
T ss_pred HHHHHH
Confidence 666544
|
Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi. |
| >TIGR02121 Na_Pro_sym sodium/proline symporter | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.0026 Score=69.04 Aligned_cols=283 Identities=10% Similarity=0.053 Sum_probs=137.7
Q ss_pred ccccChHHHHHHHhhhhccchhhh-cchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccc----cCCchhhhhhh
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFV-LTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIP----VAGGSFAYLRV 145 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~-~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P----~~GG~y~~~~~ 145 (605)
.|+++++-...-..++.++...+. .++.... .|....+..+-..+..+...+.+++.-+++. ..-..++|.++
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~--~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV--TGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 588888877655555555544444 3444432 3543222221111222222333443333221 23357899999
Q ss_pred hhCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcc
Q 007398 146 ELGD---FVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVST 222 (605)
Q Consensus 146 ~~g~---~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 222 (605)
.||+ ....+.+....+......+....+.+..++..++.+. + ..+.+..++.+.....-|.
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi~~--~--------------~~iii~~~i~~~Yt~~GGl 176 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGLDY--K--------------TGLLIGALIIVIYTFFGGF 176 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccH--H--------------HHHHHHHHHHHHHHHhhhH
Confidence 9984 4555555555555555666677777777777766421 1 0122233344445566788
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhcc-------------ccCCCCccCCCChhHHHHHHHHHHHHhhhhhhHhhhhh
Q 007398 223 KGSSRFNYIASIIHVIVILFIIIGGFANA-------------DTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAE 289 (605)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~-------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~ 289 (605)
|...+.+.+-.++.++..+++.+..+.+. +++..+.+.+.++..+...+.. ...+.|.....+-.=
T Consensus 177 ~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~p~~~qR~~ 255 (487)
T TIGR02121 177 LAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAW-GLGYFGQPHIIVRFM 255 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHH-HHHhccchHHHHHHH
Confidence 88888777766666555443333322211 1111111112222222222111 112222222222222
Q ss_pred hhcCCCCchhhHHHHHHHHHHHHHHHHHHH-HH--hcccc-cc---cCCCChHHHHHHHhChhHHHHHHHHHHHHHHHHH
Q 007398 290 ETKNPAKDIPIGLVGSMAVTTLAYCLLAIA-LC--LMQPY-YA---INVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTV 362 (605)
Q Consensus 290 E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~-~~--~~~~~-~~---~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 362 (605)
-.||+ |+..|+...+.....+.++...+. +. ...+. .+ .+++..+....+...+++..-++..+++.+.+++
T Consensus 256 aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST 334 (487)
T TIGR02121 256 AIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIMST 334 (487)
T ss_pred hcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 24554 677788776654332222211111 11 11111 11 1234455666666666777777777777788888
Q ss_pred HHHHhhhhhHH
Q 007398 363 LLVSAVGQARY 373 (605)
Q Consensus 363 ~~~~~~~~sR~ 373 (605)
..+.+.+.|-.
T Consensus 335 ~~s~l~s~ss~ 345 (487)
T TIGR02121 335 ISSQLLVSSSA 345 (487)
T ss_pred HHHHHHHHHHH
Confidence 87777766654
|
This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. |
| >TIGR00813 sss transporter, SSS family | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00039 Score=73.76 Aligned_cols=283 Identities=11% Similarity=0.018 Sum_probs=155.5
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhCh-
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGD- 149 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~- 149 (605)
.|+++++-......++.++.+.+......+.. .|...++..+...+.....+..+.+.-++.+ .-..++|.++.||+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYA-YGFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCch
Confidence 47889888888777777776655554444433 3533222222223334445566666655544 44688999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHH
Q 007398 150 FVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFN 229 (605)
Q Consensus 150 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 229 (605)
....+.+....+..+...+....+.+..++..++.+. + ..+.+...+.......-|.|...+.+
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi~~--~--------------~~~ii~~~i~~~Yt~~GG~~av~~Td 143 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSVDLFSGALLIELITGLDL--Y--------------LSLLLLGAITILYTVFGGLKAVVWTD 143 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH--H--------------HHHHHHHHHHHHHHHHcchHHHHHHH
Confidence 5667777777788888888888888888888876432 1 02222333334455567888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc-------------c------CCCCc-cCCCC-hhHHHH---HHHHHHHHhhhhhh-H
Q 007398 230 YIASIIHVIVILFIIIGGFANAD-------------T------KNYKA-FAPFG-TRGVFK---ASAVLFFAYIGFDA-V 284 (605)
Q Consensus 230 ~~~~~~~l~~~~~~~i~~~~~~~-------------~------~~~~~-~~~~g-~~~~~~---~~~~~~~~~~G~e~-~ 284 (605)
.+-.++.++..+++.+..+.+.+ + +++.. ..+.. ...+.. +.......+ +.+. .
T Consensus 144 ~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~ 222 (407)
T TIGR00813 144 TIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWY-WTNQVI 222 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHH-hcCHHH
Confidence 77776665554443333322111 0 00000 00000 001111 111111111 1111 1
Q ss_pred hhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHh---ccc---cc-c----cCCCChHHHHHHHhChhHHHHHHHH
Q 007398 285 STMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCL---MQP---YY-A----INVDAPFSVAFEAVGWDWAKYVVAF 353 (605)
Q Consensus 285 ~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~---~~~---~~-~----~~~~~p~~~~~~~~g~~~~~~~~~~ 353 (605)
.+-.=-.|| +|+..|+...+.....+.+++..+.-.. ..+ ++ + .+.+..+....+...+++..-++.+
T Consensus 223 ~qR~~a~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~a 301 (407)
T TIGR00813 223 VQRCLAAKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLA 301 (407)
T ss_pred hhHHHhcCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHH
Confidence 222233455 4788899888877666655443322111 122 11 1 1334556666666667777777777
Q ss_pred HHHHHHHHHHHHHhhhhhHH
Q 007398 354 GALKGMTTVLLVSAVGQARY 373 (605)
Q Consensus 354 ~~~~~~~~~~~~~~~~~sR~ 373 (605)
+++.+.+++..+.+.+.+-.
T Consensus 302 gilaA~mST~~s~l~a~ss~ 321 (407)
T TIGR00813 302 AILAAVMSTLSSQLNSASTV 321 (407)
T ss_pred HHHHHHHHhhhhhHHHHHHH
Confidence 77878887777776666554
|
have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli. |
| >PRK15419 proline:sodium symporter PutP; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0081 Score=65.48 Aligned_cols=156 Identities=10% Similarity=-0.023 Sum_probs=84.3
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHH-HHHHHHHhh----hhhccccCCchhhhhhh
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSA-MLSVFCYTE----FAVEIPVAGGSFAYLRV 145 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~-~~~a~~~ae----l~s~~P~~GG~y~~~~~ 145 (605)
.|+++++-..+...++.++...+......+.. .|....+.. ++..+. ......++. ...+....-..++|.++
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~-~G~~~~~~~-~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFL-SGISESWIA-IGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHH-cCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 58899988877767777765555433333223 454432221 122121 111111111 11112234467899999
Q ss_pred hhCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcc
Q 007398 146 ELGD---FVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVST 222 (605)
Q Consensus 146 ~~g~---~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 222 (605)
.||+ ....+.+....+......+....+.+..++..++.+. + ..+.+...+.......-|.
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~--~--------------~~iii~~~iv~iYt~~GGl 180 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSY--E--------------TALWAGAAATILYTFIGGF 180 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--H--------------HHHHHHHHHHHHHHHhhhH
Confidence 9984 4555566655555666666666677777777766421 1 1222333344445556788
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 007398 223 KGSSRFNYIASIIHVIVILFII 244 (605)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~ 244 (605)
|...+.+.+-.++.++..+++.
T Consensus 181 ~aV~~TD~iQ~~imi~g~i~~~ 202 (502)
T PRK15419 181 LAVSWTDTVQASLMIFALILTP 202 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877777666655444333
|
|
| >PRK00701 manganese transport protein MntH; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0047 Score=65.62 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=48.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhhccc-cCC-chhhhhhhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007398 105 GPAVVLSFVVSGLSAMLSVFCYTEFAVEIP-VAG-GSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLC 182 (605)
Q Consensus 105 G~~~~~~~il~~~~~~~~a~~~ael~s~~P-~~G-G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~ 182 (605)
|...+|..++ +.+....+-|++.++- ..| |..+-.++.+||.++++......++.......+..+.+.-++.++
T Consensus 64 Gy~LLW~lll----s~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 64 GYTLLWVILL----SNLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred CHHHHHHHHH----HHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444443 4445556677777766 344 788888999999988877666666666666666666665555555
Q ss_pred cC
Q 007398 183 NK 184 (605)
Q Consensus 183 ~~ 184 (605)
+.
T Consensus 140 gi 141 (439)
T PRK00701 140 GI 141 (439)
T ss_pred CC
Confidence 43
|
|
| >PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0052 Score=64.26 Aligned_cols=309 Identities=17% Similarity=0.153 Sum_probs=163.9
Q ss_pred hhhccchhhhcchHhHhhhcCch---HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChhHHHHHHHHHHH
Q 007398 85 GAVIGAGIFVLTGQEARQEAGPA---VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILL 161 (605)
Q Consensus 85 ~~~ig~gi~~~~~~~~~~~~G~~---~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~~~g~~~~~ 161 (605)
+.-.|+|=...|...-.+ +|.. +.+++++.++..=..+..- .-..||.+.=..+..||..|.+......+
T Consensus 14 amFFGAGNLIFPp~lG~~-aG~~~~~a~~GF~lTgV~lP~Lgvia------~~~~~~~~~~l~~~v~~~f~~if~~~i~l 86 (427)
T PF05525_consen 14 AMFFGAGNLIFPPFLGQQ-AGSNWWPAMIGFLLTGVGLPLLGVIA------VAKSGGGIEDLASRVGPKFALIFTILIYL 86 (427)
T ss_pred HHHhCCccccchHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHH------HhhcCCCHHHHhcccCcHHHHHHHHHHHH
Confidence 334577777777766555 6653 5667777776643333221 11234344444456677777665532222
Q ss_pred HH--HHHHHHHHHHHHH-HHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Q 007398 162 EY--VIGGAAVARSWTS-YFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVI 238 (605)
Q Consensus 162 ~~--~~~~a~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~ 238 (605)
.- ....+-.+...-+ .+...++. +..+ ...+..+++..+..++.+...|...++.++++.+.++
T Consensus 87 ~IGP~~aiPRtaa~sfe~~i~p~~~~-~~~~------------~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~ 153 (427)
T PF05525_consen 87 SIGPLFAIPRTAAVSFEMGIAPFFPE-NSNI------------SLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLI 153 (427)
T ss_pred HHHhcccCcchhhhhHHHhhhccCCc-cccc------------chhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 11 1111111111111 11122221 1111 1236677778888888999999999999999999999
Q ss_pred HHHHHHHHhhhccccCCCCc---cCCCC-hhHHHHHH----HHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHHHHHHH
Q 007398 239 VILFIIIGGFANADTKNYKA---FAPFG-TRGVFKAS----AVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTT 310 (605)
Q Consensus 239 ~~~~~~i~~~~~~~~~~~~~---~~~~g-~~~~~~~~----~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~~ 310 (605)
.++++++.++.+...+...+ +.+.. ..|+.-|- ..+...|...-..+--....||+ |++.|.+..+-++..
T Consensus 154 ~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ag~ia~ 232 (427)
T PF05525_consen 154 LLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIKAGLIAG 232 (427)
T ss_pred HHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHH
Confidence 99999999888654332211 11111 11222221 12223333333333333334443 455565555555544
Q ss_pred H----HHHHHHHHHHhcccccc----cCCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCC
Q 007398 311 L----AYCLLAIALCLMQPYYA----INVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHM 382 (605)
Q Consensus 311 v----~y~l~~~~~~~~~~~~~----~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~ 382 (605)
+ +|....+. +...... .+..+-+..+.++.-++.+..++.+...++++++..+...+.+....
T Consensus 233 ~lL~~IY~gL~~l--Ga~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~------- 303 (427)
T PF05525_consen 233 ILLALIYGGLAYL--GATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFS------- 303 (427)
T ss_pred HHHHHHHHHHHHH--ccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 4 34433322 2222221 22234556666677778888999999999999999998888887765
Q ss_pred CchhhhhhcCCCcchhHHH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 007398 383 MPPWLAQVHGKTGTPVNAT-IVMLTATAIIAFFTKLNVLSNLLSISTLFIF 432 (605)
Q Consensus 383 lP~~f~~~~~r~~~P~~ai-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y 432 (605)
+..| +.++... ++.++++.+++.+ .++.+.++..-...+.|
T Consensus 304 ------~~~~--kisY~~~v~i~~i~S~~ian~-Gl~~Ii~~s~PiL~~iY 345 (427)
T PF05525_consen 304 ------ELFP--KISYKVWVIIFTIFSFIIANL-GLDQIIKISVPILMFIY 345 (427)
T ss_pred ------HHhc--ccChHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHh
Confidence 3332 2333322 2334455444444 36666666665555555
|
They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane |
| >COG0733 Na+-dependent transporters of the SNF family [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0055 Score=63.39 Aligned_cols=286 Identities=13% Similarity=0.063 Sum_probs=139.8
Q ss_pred hHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccc-cCCchhhhhhhhhChhHHHH
Q 007398 76 WWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIP-VAGGSFAYLRVELGDFVAFV 154 (605)
Q Consensus 76 ~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P-~~GG~y~~~~~~~g~~~g~~ 154 (605)
...-+.-+.|+.+|.|-.-..+..+...||.+-++-|++. ++..-.-+..+|++--.- +.+..-.|-+ ..++.....
T Consensus 11 rlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~-~l~~GiPlli~Ef~iGr~~~~~~~~a~~~-l~~~~~~~~ 88 (439)
T COG0733 11 RLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIF-LLLVGIPLLLAEFAIGRRGRKNAVGAFRK-LAPKKKWEW 88 (439)
T ss_pred HHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHH-HHHHhHHHHHHHHHhhhhcCCChhHHHHH-hccCccchh
Confidence 3344556667888999888888888776666533334433 223333445566643222 1222222222 221222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchh-hh
Q 007398 155 AAGNILLEYVIGGAAVARSWTSYFATL-------CNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKG-SS 226 (605)
Q Consensus 155 ~g~~~~~~~~~~~a~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~ 226 (605)
.||.-.+......+.+....+-.+.+. ++.+.+.......+...+.......-.+++++...+..+|++. ..
T Consensus 89 ~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GIE 168 (439)
T COG0733 89 IGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGIE 168 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhHH
Confidence 444433333333333332222222111 1111111111111111111112233355555666677788887 68
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc---------cCCCCccCCCChhHHHHHHHHHHHHh-hhhhhHhhhhhhhcCCCC
Q 007398 227 RFNYIASIIHVIVILFIIIGGFANAD---------TKNYKAFAPFGTRGVFKASAVLFFAY-IGFDAVSTMAEETKNPAK 296 (605)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~~~~~-~G~e~~~~~a~E~k~p~r 296 (605)
|.++++.....+.++++.+-.+...+ ..+++... +...+..++..++|+. .|+.....++.-.++ +.
T Consensus 169 k~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~--~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~~ 245 (439)
T COG0733 169 KANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLT--DPKVWLAALGQAFFSLSLGFGIMITYSSYLSK-KS 245 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcC--chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc
Confidence 88888877766666555544333211 01111111 1345677788888887 588888888888876 67
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHh---cccccccCC-C---ChHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHH
Q 007398 297 DIPIGLVGSMAVTTLAYCLLAIALCL---MQPYYAINV-D---APFSVAFEAVG-WDWAKYVVAFGALKGMTTVLLVS 366 (605)
Q Consensus 297 ~vp~ai~~~~~~~~v~y~l~~~~~~~---~~~~~~~~~-~---~p~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 366 (605)
|+++.-.........+-++..+.+.- ..+.+.-.. + ..+++++.+.+ +.....+.....+++.++|..+.
T Consensus 246 ~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSm 323 (439)
T COG0733 246 DLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISM 323 (439)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89988887777766665555544322 222221111 1 14667777665 22333333344444444444443
|
|
| >PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00013 Score=77.45 Aligned_cols=291 Identities=16% Similarity=0.100 Sum_probs=135.3
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChh
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDF 150 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~ 150 (605)
.|+++++-.....+++.++.+.+......... .|....+..+...+.....++.++.--++ .+.-..++|.++.+|+.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFLLFALFFAPRLRR-SGAVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHHHHHHHTHHHHHH-TT--SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHHHHHHHHHHhhcc-cchhhhhhhhhhhcCCc
Confidence 48889887777777777776555543333333 45543332233333333344444443332 23446889999999988
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHH
Q 007398 151 V--AFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRF 228 (605)
Q Consensus 151 ~--g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 228 (605)
. ..+.+....+..+...+....+.+..++..++.+.. ..+.+..++.......-|.|...+.
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi~~~----------------~~~~i~~~i~~iYt~~GGl~av~~t 146 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGIPYN----------------TAILIVGVIVIIYTFFGGLRAVAWT 146 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--HH----------------HHHHHHHHHHHHTTCTT------SH
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccchhhh----------------HHHHHHHHHHHHhhhhhhHhhhhHH
Confidence 8 566555566666677788888888888887764221 0122222223333445688888777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-------------ccCCCCccCCCCh---hHHHHHHHHHHHHhhhhhhHhhhhhh--
Q 007398 229 NYIASIIHVIVILFIIIGGFANA-------------DTKNYKAFAPFGT---RGVFKASAVLFFAYIGFDAVSTMAEE-- 290 (605)
Q Consensus 229 ~~~~~~~~l~~~~~~~i~~~~~~-------------~~~~~~~~~~~g~---~~~~~~~~~~~~~~~G~e~~~~~a~E-- 290 (605)
+.+-.++.++..+++.+..+... +++..+.+.|.+. ..........+....|.....++...
T Consensus 147 d~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~ 226 (406)
T PF00474_consen 147 DFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRFL 226 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHHH
Confidence 76666655554444333322210 1100011112221 00000000000111233222333333
Q ss_pred -hcCCCCchhhHHHHHHHHHHHHHHHH------HHHHHhcccc----cccCCCChHHHHHHHhChhHHHHHHHHHHHHHH
Q 007398 291 -TKNPAKDIPIGLVGSMAVTTLAYCLL------AIALCLMQPY----YAINVDAPFSVAFEAVGWDWAKYVVAFGALKGM 359 (605)
Q Consensus 291 -~k~p~r~vp~ai~~~~~~~~v~y~l~------~~~~~~~~~~----~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 359 (605)
.||+ |+..|+...+.....+++... ...+....|. +..+++..+........+++..-++.+.++.+.
T Consensus 227 aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~ 305 (406)
T PF00474_consen 227 AAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAAI 305 (406)
T ss_dssp SSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHH
T ss_pred hcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHhh
Confidence 3443 677788777654444433331 1112222221 112334466666767777777777777777788
Q ss_pred HHHHHHHhhhhhHHHHHHHhcCCC
Q 007398 360 TTVLLVSAVGQARYLTHIARTHMM 383 (605)
Q Consensus 360 ~~~~~~~~~~~sR~l~a~Ardg~l 383 (605)
+++..+.+.+.+-. ++||=.-
T Consensus 306 ~ST~~s~l~a~ss~---~~~Di~~ 326 (406)
T PF00474_consen 306 MSTADSLLLAISSI---FSRDIYK 326 (406)
T ss_dssp HHHHHHHHHHHHHH---HHHHCCC
T ss_pred hHHHHHHHhhhhhh---hhHHhhh
Confidence 88888777766654 4466443
|
Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A. |
| >PRK12488 acetate permease; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.018 Score=63.35 Aligned_cols=156 Identities=13% Similarity=0.011 Sum_probs=92.2
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHH-HHHHHhhhhhccccCCchhhhhhhhhC-
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAML-SVFCYTEFAVEIPVAGGSFAYLRVELG- 148 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~-~a~~~ael~s~~P~~GG~y~~~~~~~g- 148 (605)
.|+++++...+...+..++...|......... .|...++ +.++..+... ..+.+++--++... -..++|.++.||
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLGK-YTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-cchHHHHHHHcCC
Confidence 58899999887777777766655543333333 4543322 2223222222 23334444443322 357778888887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHH
Q 007398 149 DFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRF 228 (605)
Q Consensus 149 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 228 (605)
|....+.+....+..+........+.+..++.+++.+. + ..+.+..++.......-|.|...+.
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi~~--~--------------~~iii~~~i~~~Yt~~GGm~av~~t 206 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGISY--L--------------YAVVIVGALMVLYVTFGGMLATTWV 206 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--H--------------HHHHHHHHHHHHHHhccchhHHHHH
Confidence 66888888877777777777888888888888776431 1 0122222233334446789988888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007398 229 NYIASIIHVIVILFIII 245 (605)
Q Consensus 229 ~~~~~~~~l~~~~~~~i 245 (605)
+.+-.++.++..+++.+
T Consensus 207 d~iQ~~im~~~~i~~~~ 223 (549)
T PRK12488 207 QIIKAVLLLSGTSFMAF 223 (549)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 87777666665544433
|
|
| >COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.015 Score=60.81 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccc-cCC-chhhhhhhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 007398 111 SFVVSGLSAMLSVFCYTEFAVEIP-VAG-GSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPED 188 (605)
Q Consensus 111 ~~il~~~~~~~~a~~~ael~s~~P-~~G-G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~ 188 (605)
.++..-+++.+.++..-|++.++- .+| |.-+-.++.++|.++++......+..+...-.+..+.+-.++.+++.+.
T Consensus 49 ~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~-- 126 (416)
T COG1914 49 SLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPL-- 126 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH--
Confidence 334444556666777777777776 334 4677788889999988887776666666666677776666666664421
Q ss_pred chhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 007398 189 FRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFAN 250 (605)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 250 (605)
.++.++..+..++.+.+ |...+++.+...+.+...+.+....+.+
T Consensus 127 ----------------~~g~iItav~~~iil~~-~~~r~~E~~v~~l~~~~~i~~~~~~~~~ 171 (416)
T COG1914 127 ----------------IIGAVITAVDVLIILLL-KGYRLLERVVLILGLVLVILFVYVAFVA 171 (416)
T ss_pred ----------------HHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 23333333333222222 2456666666666655555555554444
|
|
| >PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0029 Score=65.80 Aligned_cols=243 Identities=16% Similarity=0.156 Sum_probs=124.8
Q ss_pred HHHHHHHHHhhhhhccc--cCCchhhhhhhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccC
Q 007398 118 SAMLSVFCYTEFAVEIP--VAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHS 195 (605)
Q Consensus 118 ~~~~~a~~~ael~s~~P--~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~ 195 (605)
++.+..+.+-|++.++- +.-+..+-.++.+||.+++.......+..+.....+..+.+.-++.+++.+. +
T Consensus 21 l~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g~~~--~------ 92 (358)
T PF01566_consen 21 LSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFGIPL--W------ 92 (358)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--H------
Confidence 44555666777777776 2336677778889999998888877777777777777777666665553322 1
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhh-ccccCC-CC----ccCCCChhHHHH
Q 007398 196 MPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFA-NADTKN-YK----AFAPFGTRGVFK 269 (605)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~-~~~~~~-~~----~~~~~g~~~~~~ 269 (605)
....+..+.+..+.+...+..+++++++.++..+..+.+++..+. +.+... .. |-.|. ..++..
T Consensus 93 ---------~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~-~~~~~~ 162 (358)
T PF01566_consen 93 ---------IWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPG-PGSLLF 162 (358)
T ss_pred ---------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcc-hhHHHH
Confidence 222223333333333234556677777666665554443333332 222211 11 22222 122222
Q ss_pred HHHHHHHHhhhhhhHhhhh---hhhcCCCC---c-hhhHHHHHHHHHHHHHHHHHHHH----Hhccc--ccccCCCChHH
Q 007398 270 ASAVLFFAYIGFDAVSTMA---EETKNPAK---D-IPIGLVGSMAVTTLAYCLLAIAL----CLMQP--YYAINVDAPFS 336 (605)
Q Consensus 270 ~~~~~~~~~~G~e~~~~~a---~E~k~p~r---~-vp~ai~~~~~~~~v~y~l~~~~~----~~~~~--~~~~~~~~p~~ 336 (605)
.+...-.....++...|-+ |+-.+++| + --|-...-..+..++..+.+.++ ..... ..+..+.+...
T Consensus 163 ~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~~~ 242 (358)
T PF01566_consen 163 AVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQAA 242 (358)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 2222223333333332221 11111111 1 01122222222222222222221 11111 11222334556
Q ss_pred HHHHHhCh-hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007398 337 VAFEAVGW-DWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIA 378 (605)
Q Consensus 337 ~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~A 378 (605)
+.++..-+ ++...++.++++.+.+++..+...+.++.+.+.-
T Consensus 243 ~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 243 QALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 66676555 7999999999999999999999888888877655
|
The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane |
| >COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.021 Score=61.86 Aligned_cols=155 Identities=15% Similarity=0.084 Sum_probs=98.5
Q ss_pred ccccChHHHHHHHhhhh-cc-chhhhcchHhHhhhcCchHHHHHH----HHHHHHHHHHHHHhhhhhccccCCchhhhhh
Q 007398 71 KKTLTWWDLIWFGIGAV-IG-AGIFVLTGQEARQEAGPAVVLSFV----VSGLSAMLSVFCYTEFAVEIPVAGGSFAYLR 144 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~-ig-~gi~~~~~~~~~~~~G~~~~~~~i----l~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 144 (605)
.|+++.+ +.+++.+.. .+ ...+..++.... .|....+..+ ...+.....+--..+++ +.++.-..++|.+
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~--~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~ 112 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAYA--SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE 112 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence 5889998 766666644 34 445555555543 4555333222 23333444555566677 5555667999999
Q ss_pred hhhC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcch
Q 007398 145 VELG-DFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTK 223 (605)
Q Consensus 145 ~~~g-~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 223 (605)
+.|| +....+.+....+..+...+....+.+..++..++.+. . ....++...+.......|.|
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~-~---------------~~~~~~~~~v~~Yt~~gG~~ 176 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISY-V---------------TGILIGALIVALYTFLGGLR 176 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCH-H---------------HHHHHHHHHHHHHHHHcChh
Confidence 9999 89999999999999999999999999998877776321 1 02222334444445566777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 007398 224 GSSRFNYIASIIHVIVILFIII 245 (605)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~i 245 (605)
...+...+=..+.++.+..+.+
T Consensus 177 av~~Td~iqg~im~i~~~~~~i 198 (493)
T COG0591 177 AVVWTDFIQGLIMLIALIVIPI 198 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666655555554443333
|
|
| >PRK10484 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.032 Score=61.21 Aligned_cols=290 Identities=11% Similarity=-0.030 Sum_probs=135.2
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchH-HHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhCh
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAV-VLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGD 149 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~-~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 149 (605)
.|+++++-..+-..++.++...|......... .|... .+.+ ...+...+.++.++.--++. ..-..++|.++.||+
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~~~~-~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ryg~ 113 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMAWEV-TAAIALIILALIFLPRYLKS-GITTIPDFLEERYDK 113 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHHHHH-HHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhcCc
Confidence 58899988777776766766555543333322 45442 2222 12222233444443332332 233678899999998
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC-CcchhhccCCCCCcCchhHHHH--HHHHHHHHHHHhcchhh
Q 007398 150 FVAFVAAGNILLEYVIG-GAAVARSWTSYFATLCNKQP-EDFRIIVHSMPEDYGQLDPIAV--GVSAVICILAVVSTKGS 225 (605)
Q Consensus 150 ~~g~~~g~~~~~~~~~~-~a~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~g~~~~ 225 (605)
......+....+.+... .+......+..++..++... ...+.. ....+.. +.++.......-|.|..
T Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~---------~~~~~~~~~~~~i~~~Yt~~GGl~aV 184 (523)
T PRK10484 114 TTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYG---------AAIWLLVWLIGIIGAIYAVFGGLKAV 184 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHH---------HHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 76666666555555443 22222223333333322110 000000 0001111 11222344455688888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcc---------------ccCCCCccCC----CChhHHHHHHHHHHHHhhhhh-hHh
Q 007398 226 SRFNYIASIIHVIVILFIIIGGFANA---------------DTKNYKAFAP----FGTRGVFKASAVLFFAYIGFD-AVS 285 (605)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~i~~~~~~---------------~~~~~~~~~~----~g~~~~~~~~~~~~~~~~G~e-~~~ 285 (605)
.+.+.+-.++.++..+++.+..+... +++.++...+ ..+...+.+.......+.+.+ ...
T Consensus 185 ~~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 264 (523)
T PRK10484 185 AVSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIV 264 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHH
Confidence 88777776666555433322222110 1111111111 122223333322212222211 222
Q ss_pred hhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHH---HHHhcccccccCCCChHHHHHHHhChhHHHHHHHHHHHHHHHHH
Q 007398 286 TMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAI---ALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTV 362 (605)
Q Consensus 286 ~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~---~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 362 (605)
+-.=-.||+ |+..|+...+.....+.+....+ ......|.+..+++..+.....+..+++..-++..+++.+.+++
T Consensus 265 qR~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST 343 (523)
T PRK10484 265 QRALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILST 343 (523)
T ss_pred HHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHH
Confidence 233334563 67778887776554444333221 11122232222345566666666666777777777777777777
Q ss_pred HHHHhhhhhHH
Q 007398 363 LLVSAVGQARY 373 (605)
Q Consensus 363 ~~~~~~~~sR~ 373 (605)
..+.+.+.|-.
T Consensus 344 ~~s~l~s~st~ 354 (523)
T PRK10484 344 FNGFLNSASTL 354 (523)
T ss_pred HHHHHHHHHHH
Confidence 77777666544
|
|
| >PRK09395 actP acetate permease; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.034 Score=61.31 Aligned_cols=154 Identities=10% Similarity=-0.008 Sum_probs=86.6
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHH-HHHHHHhhhhhccccCCchhhhhhhhhC-
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAM-LSVFCYTEFAVEIPVAGGSFAYLRVELG- 148 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~-~~a~~~ael~s~~P~~GG~y~~~~~~~g- 148 (605)
.|+++++.......++.++...|......... .|...++ +.++..+.. ...+.+++--++.. .-..++|.++.||
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~~-~~~~~~~g~~~~~~~~~~~~r~~g-~~T~~d~l~~Rygs 144 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGLI-YSIGFLVGWPIILFLIAERLRNLG-KYTFADVASYRLKQ 144 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHHHHHhhCC-CccHHHHHHHHcCC
Confidence 58899987766666666665555443333222 4544322 222222222 22333333222221 2346677778888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHH
Q 007398 149 DFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRF 228 (605)
Q Consensus 149 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 228 (605)
|....+.+....+..+........+.+..++..++.+. + ..+.+..++.......-|.|...+.
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi~~--~--------------~~ili~~~i~~iYt~~GGm~av~~T 208 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGLNY--H--------------VAVVLVGVLMMVYVLFGGMLATTWV 208 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--H--------------HHHHHHHHHHHHHHhhcchHHHHHH
Confidence 56788888877777777777777777777777766421 1 1222333333444556788888888
Q ss_pred HHHHHHHHHHHHHHH
Q 007398 229 NYIASIIHVIVILFI 243 (605)
Q Consensus 229 ~~~~~~~~l~~~~~~ 243 (605)
+.+-.++.++..+++
T Consensus 209 D~iQ~iim~~g~ii~ 223 (551)
T PRK09395 209 QIIKAVLLLSGATFM 223 (551)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777666665554433
|
|
| >TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.025 Score=59.42 Aligned_cols=242 Identities=13% Similarity=0.101 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccCC-chhhhhhhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007398 108 VVLSFVVSGLSAMLSVFCYTEFAVEIPVAG-GSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQP 186 (605)
Q Consensus 108 ~~~~~il~~~~~~~~a~~~ael~s~~P~~G-G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~ 186 (605)
++++.+++.++........+..+ |+.| ......|..||++.+.+.+....+..+...+..+...++.++.+.+...
T Consensus 31 ai~aiilG~~i~~~~~~l~~~~G---~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~ 107 (386)
T TIGR02358 31 GLLAILLGHLVGVLLLSAAGVIG---ADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF 107 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---cccCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555444343444444 4444 4677888899999999998888888888888888888888877764311
Q ss_pred CcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccCCCChhH
Q 007398 187 EDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFANADTKNYKAFAPFGTRG 266 (605)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~g~~~ 266 (605)
+... ......++.++......+|.|...+++++...+..+..+...+..+.+.+.... ..+.+-..
T Consensus 108 ~~~~------------~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~s 173 (386)
T TIGR02358 108 GEES------------PMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSEL--WNRAGDMS 173 (386)
T ss_pred CCCc------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh--cCCCCCcc
Confidence 1000 012223334445666788999999999999888777766555544444332211 11111122
Q ss_pred HHHHHHHHHHH-hhhhhhHhhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHhChh
Q 007398 267 VFKASAVLFFA-YIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWD 345 (605)
Q Consensus 267 ~~~~~~~~~~~-~~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 345 (605)
+..++....-. ..+.-..+.++...|+| |+.-++...+..+...+..+.........+. .+|. +.....+..
T Consensus 174 ~~~~~~~~~~~~~swa~~~~DysRy~k~~-~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~-----~d~~-~~~~~~g~~ 246 (386)
T TIGR02358 174 FAVAVELVIAMPLSWLPLIADYTRFARNP-RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQ-----TDII-SILAGAGLG 246 (386)
T ss_pred HHHHHHHHHHHHHHHHHHccchhhhcCCC-cceehHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCHH-HHHHhccHH
Confidence 33333222211 12222367777777876 4455777766666666555555444333322 2343 333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007398 346 WAKYVVAFGALKGMTTVLLVSAVGQARYLTH 376 (605)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 376 (605)
.+..+..+++..++.....++++=-+..
T Consensus 247 ---~~~~~~~~l~~~~~n~~N~ys~~l~l~~ 274 (386)
T TIGR02358 247 ---IPALLIILLSTVTTTFMDIYSAAISTGN 274 (386)
T ss_pred ---HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 2333444555555544444444433333
|
On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate. |
| >PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.033 Score=58.39 Aligned_cols=269 Identities=12% Similarity=0.073 Sum_probs=136.9
Q ss_pred hhhccchhhhcchHhHhhhcCch---HHHHHHHHHHHHHHHHHHHhhhhhccccC-CchhhhhhhhhChhHHHHHHHHHH
Q 007398 85 GAVIGAGIFVLTGQEARQEAGPA---VVLSFVVSGLSAMLSVFCYTEFAVEIPVA-GGSFAYLRVELGDFVAFVAAGNIL 160 (605)
Q Consensus 85 ~~~ig~gi~~~~~~~~~~~~G~~---~~~~~il~~~~~~~~a~~~ael~s~~P~~-GG~y~~~~~~~g~~~g~~~g~~~~ 160 (605)
+.-.|.|=...|...-.+ +|.. +.+++++.++..=..+..- - -.. |+..... +..||..|.+......
T Consensus 19 amFFGAGNLIFPp~LG~~-aG~~~~~a~~GF~iT~VglPlLgiia----v--a~~~g~~~~l~-~rv~~~f~~~f~~~i~ 90 (439)
T PRK15433 19 ALFVGAGNIIFPPMVGLQ-AGEHVWTAAFGFLITAVGLPVLTVVA----L--AKVGGGVDSLS-TPIGKVAGVLLATVCY 90 (439)
T ss_pred HHHhcCcchhccHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHH----H--hhcCCCHHHHh-hhcchHHHHHHHHHHH
Confidence 333688888777776655 6653 5667777766643333221 1 122 3444444 4567777655433221
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHhcCCCCcchhh-ccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHH
Q 007398 161 LEYVIGGAAV--ARSWTSYFATLCNKQPEDFRII-VHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHV 237 (605)
Q Consensus 161 ~~~~~~~a~~--~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l 237 (605)
+ ...+.. .+..+ ..+... .|-.+++.....+..+++..+..++.+...|...++.++++.+.+
T Consensus 91 l---~IGP~~aiPRtaa-----------vsfEm~i~p~~~~~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL 156 (439)
T PRK15433 91 L---AVGPLFATPRTAT-----------VSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKI 156 (439)
T ss_pred H---HHhhccccCCccc-----------cchhheeeccCCcccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHH
Confidence 1 111110 00100 001100 011111000123567777888888889999999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCc---cCCCC-hhHHHHHH----HHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHHHHHH
Q 007398 238 IVILFIIIGGFANADTKNYKA---FAPFG-TRGVFKAS----AVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVT 309 (605)
Q Consensus 238 ~~~~~~~i~~~~~~~~~~~~~---~~~~g-~~~~~~~~----~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~ 309 (605)
+.++++++.++.+...+...+ +.... ..|+..|- ..+...|...-..+--....||+ |++.|....+-.++
T Consensus 157 ~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~~~G~~~~-~~~~k~t~~ag~ia 235 (439)
T PRK15433 157 IALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEA-RLLTRYTVWAGLMA 235 (439)
T ss_pred HHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHH
Confidence 999999988887643221111 10110 11222111 11223333222222233345554 44555555444444
Q ss_pred ----HHHHHHHHHHHHhccc-cccc-CCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007398 310 ----TLAYCLLAIALCLMQP-YYAI-NVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTH 376 (605)
Q Consensus 310 ----~v~y~l~~~~~~~~~~-~~~~-~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 376 (605)
.++|....+.-....+ .++. +..+-........-++++..++.+....+++++..+...+.++....
T Consensus 236 ~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~ 308 (439)
T PRK15433 236 GVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQ 308 (439)
T ss_pred HHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344443333221111 1111 11122223334455588889999999999999999988888877553
|
|
| >TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.03 Score=61.86 Aligned_cols=149 Identities=9% Similarity=0.000 Sum_probs=89.9
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchH-H--HHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhh
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAV-V--LSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVEL 147 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~-~--~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 147 (605)
.|++++|-......++.++...|......... .|... + +++.++ ....++.+++.-++.. .-..++|.++.|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~-~~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGG---YVLLALLLAPYLRKFG-KYTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHH---HHHHHHHHHHHHHHCC-CccHHHHHHHHh
Confidence 58899998877777777765555433332222 35432 2 223222 2234456666666654 336899999999
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhh
Q 007398 148 G-DFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSS 226 (605)
Q Consensus 148 g-~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 226 (605)
| |....+++....+..+...+......+..++.+++.+. + ..+.+..++.......-|.|...
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi~~--~--------------~~iii~~~i~~iYt~~GG~~aV~ 169 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEVDF--E--------------TGVFIGMAIVFFYAVLGGMKGVT 169 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--H--------------HHHHHHHHHHHHHHHhhhHHHHH
Confidence 8 55677777777777777777777777778887776432 1 01222223334444556888887
Q ss_pred HHHHHHHHHHHHHH
Q 007398 227 RFNYIASIIHVIVI 240 (605)
Q Consensus 227 ~~~~~~~~~~l~~~ 240 (605)
+.+.+-.++.++..
T Consensus 170 ~TD~iQ~iim~ig~ 183 (552)
T TIGR03648 170 WTQVAQYIVLIVAY 183 (552)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666655543
|
This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused. |
| >TIGR02711 symport_actP cation/acetate symporter ActP | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.065 Score=59.05 Aligned_cols=153 Identities=10% Similarity=0.002 Sum_probs=84.4
Q ss_pred ccccChHHHHHHHhhhhccchhhh-cchHhHhhhcCchHHHHHHHHHHHHH-HHHHHHhhhhhccccCCchhhhhhhhhC
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFV-LTGQEARQEAGPAVVLSFVVSGLSAM-LSVFCYTEFAVEIPVAGGSFAYLRVELG 148 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~-~~~~~~~~~~G~~~~~~~il~~~~~~-~~a~~~ael~s~~P~~GG~y~~~~~~~g 148 (605)
.|+++++.......+..++...|. .++... . .|...++.. ++..+.. ...+.+++--++.-. --..+|.++.|+
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y-~-~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf~ 141 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVY-T-SGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR-YTFADVASYRLK 141 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHcC
Confidence 588998876555555555544443 333333 2 354422211 2222222 333445554444322 246667777786
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhH
Q 007398 149 -DFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSR 227 (605)
Q Consensus 149 -~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 227 (605)
|....+.+....+..+........+.+..++.+++.+. + ..+.+..++.......-|.|...+
T Consensus 142 s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi~~--~--------------~~iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T TIGR02711 142 QRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNY--H--------------VAVVLVGILMVMYVLFGGMLATTW 205 (549)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--H--------------HHHHHHHHHHHHHHHhhhhHHHHH
Confidence 66677777666666666666777777777777776421 1 012222233344455678888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 007398 228 FNYIASIIHVIVILFI 243 (605)
Q Consensus 228 ~~~~~~~~~l~~~~~~ 243 (605)
.+.+-.++.++..+++
T Consensus 206 td~iQ~~im~~g~i~~ 221 (549)
T TIGR02711 206 VQIIKAVLLLFGATFM 221 (549)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877776665554443
|
Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits. |
| >KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.016 Score=60.74 Aligned_cols=246 Identities=15% Similarity=0.134 Sum_probs=132.7
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhCh
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGD 149 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 149 (605)
+++.+.+..+.-...++.|+|++..|-.. .. .|.. .++...+.+++.....+.+.+.++..++. ..-.-.++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~af-k~-~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAF-KT-AGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHH-HH-hcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 45567788888888899999999877654 33 6655 67777788888888888899988888866 344444556666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhh
Q 007398 150 FVAFVAAGNILLEYVIGGAAVARSWTS----YFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGS 225 (605)
Q Consensus 150 ~~g~~~g~~~~~~~~~~~a~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 225 (605)
................ ..++.....+ ........+... . ++....-...+....++.-++..+ .. ..
T Consensus 80 ~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~---~--~~~~~~~~ill~~~~~i~pLsl~k--~l-~~ 150 (411)
T KOG1305|consen 80 LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGG---S--HYLDRNFLILLVLLFIILPLSLLK--NL-DS 150 (411)
T ss_pred CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccc---c--ccccceeEeehHHHHHHHHHHHHH--hh-hh
Confidence 4422211111100000 0000000001 111111000000 0 000000000122222222222222 11 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccc--CCCCccCCCCh--hHHHHHHHHHHHHhhhhhhHhhhhhhhcCCC-Cchhh
Q 007398 226 SRFNYIASIIHVIVILFIIIGGFANADT--KNYKAFAPFGT--RGVFKASAVLFFAYIGFDAVSTMAEETKNPA-KDIPI 300 (605)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~-r~vp~ 300 (605)
-+.....++..++.++++.+......+. .......+.+. .++..++...+++|..+......-.|+|||+ |++-+
T Consensus 151 Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~ 230 (411)
T KOG1305|consen 151 LKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQR 230 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHH
Confidence 2233333333333333333333332111 11112223332 5688899999999999999999999999996 67888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Q 007398 301 GLVGSMAVTTLAYCLLAIALCLMQPYYA 328 (605)
Q Consensus 301 ai~~~~~~~~v~y~l~~~~~~~~~~~~~ 328 (605)
....+...+..+|....+.-....+++.
T Consensus 231 v~~~~~~~~~~iy~~~g~~GYL~Fg~~v 258 (411)
T KOG1305|consen 231 VSNIAIILATLIYLLTGLFGYLTFGDLV 258 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheecccc
Confidence 8889999999999988887766666543
|
|
| >PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00079 Score=72.26 Aligned_cols=241 Identities=16% Similarity=0.100 Sum_probs=112.8
Q ss_pred cccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCC-chhhhhhhhh
Q 007398 70 MKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAG-GSFAYLRVEL 147 (605)
Q Consensus 70 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~G-G~y~~~~~~~ 147 (605)
.+|+-++++.+.+=++..+....+..-.......-+.. ++++.+++.++........ +..-|+.| ......|..|
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~---~~~G~r~Gl~~~v~sR~~F 81 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALM---GIIGPRTGLPTMVLSRASF 81 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHH---THHHHCC---HHHHTTTTS
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHh---cccccccCCCchhcchhcc
Confidence 46778899998887776655444433222211111222 5566666555544443333 44444455 4666777899
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccC-CCCCcCchhHHHHHHHHHHHHHHHhcchhhh
Q 007398 148 GDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHS-MPEDYGQLDPIAVGVSAVICILAVVSTKGSS 226 (605)
Q Consensus 148 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 226 (605)
|...+.+.+....+..+...+.++...++.+....+...+.+.. .++ .........+..++..++.....+.|.|...
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l~ 160 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLW-IGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKALR 160 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------HH-----------HHHHHHHHHHHHHHCTHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchh-hhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99888888888888888888888888888888776543221000 000 0000000112223333445556677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCC--CCccCCCChhHHHHHHHHHHHHhh-hhhhHhhhhhhhcCCCCchhhHHH
Q 007398 227 RFNYIASIIHVIVILFIIIGGFANADTKN--YKAFAPFGTRGVFKASAVLFFAYI-GFDAVSTMAEETKNPAKDIPIGLV 303 (605)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~-G~e~~~~~a~E~k~p~r~vp~ai~ 303 (605)
+++.+...+.....+...+......+... ..+..+.....+..++....-.+. ..-..+.++...|++ |+..++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~-~~~~~~~~ 239 (440)
T PF02133_consen 161 RLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSD-TSAWWGFW 239 (440)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--H-HHHHHHHH
T ss_pred hHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCC-CCcEEEEe
Confidence 88877766555443333333332222211 101111111123333332222211 112234667777764 44455555
Q ss_pred HHHHHHHHHHHH
Q 007398 304 GSMAVTTLAYCL 315 (605)
Q Consensus 304 ~~~~~~~v~y~l 315 (605)
.+.....+...+
T Consensus 240 ~~~~~~~~~~~~ 251 (440)
T PF02133_consen 240 LGFPGGFIPFVL 251 (440)
T ss_dssp HHHHHHHHHHHH
T ss_pred ehhhhHHHHHHH
Confidence 555554444333
|
Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A. |
| >PLN00151 potassium transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.035 Score=61.63 Aligned_cols=221 Identities=12% Similarity=0.099 Sum_probs=104.7
Q ss_pred hhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhh---ccccCCCCccCCC---------ChhHHHHH
Q 007398 203 LDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFA---NADTKNYKAFAPF---------GTRGVFKA 270 (605)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~---~~~~~~~~~~~~~---------g~~~~~~~ 270 (605)
...+++++++.+..+--+|....++ .+..+.++=++.+...|+. +.++.-+..+.|. +..+ +..
T Consensus 274 VV~Is~~ILv~LF~~Q~~GT~kVg~---~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~g-w~~ 349 (852)
T PLN00151 274 VVMISVAFLVILFSVQRFGTSKVGF---AFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKA-WSA 349 (852)
T ss_pred ehhHHHHHHHHHHHHHhccchhhhh---hhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCce-EEE
Confidence 3356777777777777777665554 4555554444444444444 3333333333331 1111 112
Q ss_pred HHHHHHHhhhhhhH-hhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHhChhHHHH
Q 007398 271 SAVLFFAYIGFDAV-STMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKY 349 (605)
Q Consensus 271 ~~~~~~~~~G~e~~-~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 349 (605)
+..++.+.+|-|+- +.++.=- +|.+-.|-..-+.=+.++--+...++..--| + ...+||... -.+++.+
T Consensus 350 LGgVvLciTGaEALfADLGHFg---~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p-~--~~~npFy~s----vP~~~~w 419 (852)
T PLN00151 350 LGGCVLCATGSEAMFADLGYFS---VRSIQLAFTCLVLPCLLLAYMGQAAYLMKNP-D--SAEQIFFSS----VPSSLFW 419 (852)
T ss_pred ecceeeeeccchhhhcccCCCC---ccceeeeehhhHHHHHHHHHcchHHHHhcCc-c--cccCcHHHh----CCchhHH
Confidence 34456788898874 4444333 3444444433333333322222333322222 1 123454432 2233333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCch-hhhhhcCCCc----chhHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 007398 350 VVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPP-WLAQVHGKTG----TPVNATIVMLTATAIIAFFTKLNVLSNLL 424 (605)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP~-~f~~~~~r~~----~P~~ai~~~~~~~~~~~~~~~~~~l~~~~ 424 (605)
-+.+.+.++.+-+..+.+.++=-+..+.-+-|.+|+ ..-+++++.. .|..-.+++....++...+.+-+.+.+..
T Consensus 420 P~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AY 499 (852)
T PLN00151 420 PVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAY 499 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHh
Confidence 333333333333334444444445555556799994 2334443322 46555444444333444445677788877
Q ss_pred HHHHHHHHHHHHH
Q 007398 425 SISTLFIFMLVAV 437 (605)
Q Consensus 425 ~~~~~~~y~~~~~ 437 (605)
+++.....++..+
T Consensus 500 GiAV~~vM~iTT~ 512 (852)
T PLN00151 500 GIAEVGVMMVSTI 512 (852)
T ss_pred hhhhhhhhhHHHH
Confidence 7776665555443
|
|
| >PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.2 Score=53.72 Aligned_cols=348 Identities=13% Similarity=0.113 Sum_probs=159.7
Q ss_pred cccccChHHHHHHHhhhhccchhhhcchH--hHhh-------hcCc--------------hHHHHHHHHHHHHHHHHHHH
Q 007398 70 MKKTLTWWDLIWFGIGAVIGAGIFVLTGQ--EARQ-------EAGP--------------AVVLSFVVSGLSAMLSVFCY 126 (605)
Q Consensus 70 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~--~~~~-------~~G~--------------~~~~~~il~~~~~~~~a~~~ 126 (605)
-|.+++.++-++|.+++-+|.|+..-... .... ..+. ..+.+|.+-++..+..++.+
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~ 150 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFF 150 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheee
Confidence 35668899999999998888887652200 0000 0110 12334666677777777766
Q ss_pred hhhhhccccCCchhhhhhh----hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCc
Q 007398 127 TEFAVEIPVAGGSFAYLRV----ELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQ 202 (605)
Q Consensus 127 ael~s~~P~~GG~y~~~~~----~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 202 (605)
..-...+--+...|.-..+ .+|+..-.++-.....+-....+......+.-++..++.+++....
T Consensus 151 y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~----------- 219 (485)
T PF02028_consen 151 YNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQ----------- 219 (485)
T ss_dssp HTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHH-----------
T ss_pred eecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHH-----------
Confidence 5533322233333333332 2333333444444444455555556666667777777765443322
Q ss_pred hhHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHHHHHHHHHhhhc--------------ccc----CCCCccCCCC
Q 007398 203 LDPIAVGVSAVICILAVVSTKG-SSRFNYIASIIHVIVILFIIIGGFAN--------------ADT----KNYKAFAPFG 263 (605)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~g~~~-~~~~~~~~~~~~l~~~~~~~i~~~~~--------------~~~----~~~~~~~~~g 263 (605)
..+.+++.++.+.-...|++. .+++.++-..+.+..++.+.+.|-.. .+. -+..++.+.+
T Consensus 220 -~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~~~~~~ 298 (485)
T PF02028_consen 220 -IIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTDPFGNSG 298 (485)
T ss_dssp -HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TTTTTTT
T ss_pred -HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Confidence 134444445555555666644 34444444444444443333333110 000 0111223333
Q ss_pred -hhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHh-cccccc-----c---CCCC
Q 007398 264 -TRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCL-MQPYYA-----I---NVDA 333 (605)
Q Consensus 264 -~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~-~~~~~~-----~---~~~~ 333 (605)
|.+-+.-+..+.|.--+--...-++.=.|. |++.--+...++...+.-.+....+.. ....+. + .+++
T Consensus 299 ~w~~~WTvFYwaWWiawaPfvG~FiArISkG--RTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g 376 (485)
T PF02028_consen 299 QWPQDWTVFYWAWWIAWAPFVGLFIARISKG--RTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQG 376 (485)
T ss_dssp HHHHHTHHHHHHHHHHTHHHHHHHHHHCTTT--SBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHhhhcCC--cCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcc
Confidence 555555555555544444444455555553 888666655555554443333322222 111111 1 1111
Q ss_pred h---HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcC-CCchhhhhhcCCCcchhHHHHHHHHHHH
Q 007398 334 P---FSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTH-MMPPWLAQVHGKTGTPVNATIVMLTATA 409 (605)
Q Consensus 334 p---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg-~lP~~f~~~~~r~~~P~~ai~~~~~~~~ 409 (605)
+ ....++.. | +..++....++..+....+..-+++..+-.++.+| .=|+...|+ .+++ +.++++.
T Consensus 377 ~~~a~~~~l~~l--P-~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri-------~W~~-~~~~~a~ 445 (485)
T PF02028_consen 377 PEAALFAFLEQL--P-LSKILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEPPRWLRI-------FWGL-IIGALAI 445 (485)
T ss_dssp HHHHHHHHHHTS--T-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHH-------HHHH-HHHHHHH
T ss_pred hhhHHHHHHHHh--h-HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCCchHHHH-------HHHH-HHHHHHH
Confidence 2 22233333 2 22344444444444455555566677777777665 212211111 1222 2333444
Q ss_pred HHHHhhc---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007398 410 IIAFFTK---LNVLSNLLSISTLFIFMLVAVALLVR 442 (605)
Q Consensus 410 ~~~~~~~---~~~l~~~~~~~~~~~y~~~~~~~~~~ 442 (605)
.+...+. .+.+..+.++...+..++.+.+.++.
T Consensus 446 ~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~ 481 (485)
T PF02028_consen 446 VLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKA 481 (485)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 44555555566666666666666553
|
The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B. |
| >COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.16 Score=52.07 Aligned_cols=273 Identities=15% Similarity=0.178 Sum_probs=138.1
Q ss_pred HHHhhhhccchhhhcchHhHhhhcCch---HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhChhHHHHHHH
Q 007398 81 WFGIGAVIGAGIFVLTGQEARQEAGPA---VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFVAAG 157 (605)
Q Consensus 81 ~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~~~g~ 157 (605)
++.++.-.|.|=...|...-.. +|.. +.+++++.++..=..+..- .-..||.+.=..+..||..|.+..-
T Consensus 12 fmLFalFFGAGNlIFPP~LG~~-aG~~~~~A~lGFllTgVglPlLgiIa------~a~~g~~~~~l~~~i~~~fg~~f~~ 84 (431)
T COG1114 12 FMLFALFFGAGNLIFPPMLGLH-AGEHVWPAILGFLLTGVGLPLLGIIA------VALYGGGVESLATRIGPWFGVLFAI 84 (431)
T ss_pred HHHHHHHhcCCCccCChhhhhh-cCccHHHHHHHHHHHHhhHHHHHHHH------hhccCCCHHHHhhhccchHHHHHHH
Confidence 3444444677766666654433 6653 5667777776643333221 2234555555555678877765543
Q ss_pred HHHHHHHHHHHHH--HHHHH-HHHHHHhcCCCCcchhhccCCCC-CcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 007398 158 NILLEYVIGGAAV--ARSWT-SYFATLCNKQPEDFRIIVHSMPE-DYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIAS 233 (605)
Q Consensus 158 ~~~~~~~~~~a~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 233 (605)
...+. ..+.. .+..+ .|=....+. ..+ ......+..++...+..++.+...|...++.++++
T Consensus 85 ~iyLs---IGPffAiPRt~~vsfe~~i~p~-----------~~~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LT 150 (431)
T COG1114 85 AIYLS---IGPFFAIPRTGAVSFEVGISPL-----------LGDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLT 150 (431)
T ss_pred HHHHH---hcccccCCcccchhHHHhhhcc-----------cCCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHh
Confidence 22221 11110 00000 000000000 011 11113366777788888889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCC---ccCCCC-hhHHHHH----HHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHH
Q 007398 234 IIHVIVILFIIIGGFANADTKNYK---AFAPFG-TRGVFKA----SAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGS 305 (605)
Q Consensus 234 ~~~l~~~~~~~i~~~~~~~~~~~~---~~~~~g-~~~~~~~----~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~ 305 (605)
.++++.++.+.+..+.+.+.+-.. .+.+.. ..|+.-| =..+..+|...-..+--..-.+++ |+..|-.+.+
T Consensus 151 PilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~~~~~~~~~a 229 (431)
T COG1114 151 PILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-KQIIKYTIKA 229 (431)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHH
Confidence 999999988888876654332111 111111 1122211 122334444333333333333343 4555555555
Q ss_pred HHHHHHHHHHHHHHHH--hcccccccCC----CChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 007398 306 MAVTTLAYCLLAIALC--LMQPYYAINV----DAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLT 375 (605)
Q Consensus 306 ~~~~~v~y~l~~~~~~--~~~~~~~~~~----~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 375 (605)
-++..+...+.-..+. +....+.... .+-+....+..-++.+..++.+...++++++..+...+.+-...
T Consensus 230 glIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~ 305 (431)
T COG1114 230 GLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFS 305 (431)
T ss_pred HHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554443333333322 2211211111 12233344455567778888888888888888887777665533
|
|
| >PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.13 Score=55.07 Aligned_cols=228 Identities=19% Similarity=0.215 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhccc--cCCCCccCC---------CChhHHHHHHH
Q 007398 204 DPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFANAD--TKNYKAFAP---------FGTRGVFKASA 272 (605)
Q Consensus 204 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~--~~~~~~~~~---------~g~~~~~~~~~ 272 (605)
..+++++++.+..+--+|....+++ +..+.++=++.+...|+.+.- ++-+..+.| +++.+ +..+.
T Consensus 133 v~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~~~~~~-~~~LG 208 (534)
T PF02705_consen 133 VPITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIRNGWIG-FFVLG 208 (534)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHHcCCch-hhhcc
Confidence 3566666666667777776555554 566655555555555554321 221111222 22222 22455
Q ss_pred HHHHHhhhhhhHhhhhhhhcC-CCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHhChhHHHHHH
Q 007398 273 VLFFAYIGFDAVSTMAEETKN-PAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVV 351 (605)
Q Consensus 273 ~~~~~~~G~e~~~~~a~E~k~-p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 351 (605)
.++.+.+|-|+--. ++-+ .+|++.++-..-+.-+.++--+..-+....-|. ..++|+.... ++|+.+.+
T Consensus 209 ~V~L~~TGaEALyA---DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~---~~~npFf~~~----P~~~~~p~ 278 (534)
T PF02705_consen 209 AVFLCVTGAEALYA---DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPE---AVSNPFFLLI----PEWLLWPM 278 (534)
T ss_pred hHHHHHhhHHHHHh---hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcc---hhhhHHHHHh----HHHHHHHH
Confidence 66788899997632 3332 345555554442333333222223333222221 1245655433 33444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCchh-hhhhcCCC-c---chhHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 007398 352 AFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPW-LAQVHGKT-G---TPVNATIVMLTATAIIAFFTKLNVLSNLLSI 426 (605)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP~~-f~~~~~r~-~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (605)
.+.+.+++.-+..+.+.++=-+..+.-+-|.+|+. ..+.+++. | .|..-.+++.....+...+.+-+.+.+..++
T Consensus 279 ~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGi 358 (534)
T PF02705_consen 279 VILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGI 358 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHH
Confidence 44444444444455555555566667788999952 33444333 2 4655554444444444445677888888888
Q ss_pred HHHHHHHHHHHHH-HHHhhh
Q 007398 427 STLFIFMLVAVAL-LVRRYY 445 (605)
Q Consensus 427 ~~~~~y~~~~~~~-~~~r~~ 445 (605)
+......+..+.+ ++.|++
T Consensus 359 AVt~tM~iTT~L~~~v~~~~ 378 (534)
T PF02705_consen 359 AVTGTMLITTILLFLVMRRV 378 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 8877777665543 344444
|
; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane |
| >KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.2 Score=52.19 Aligned_cols=305 Identities=9% Similarity=0.060 Sum_probs=136.1
Q ss_pred cccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhh-
Q 007398 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYL- 143 (605)
Q Consensus 66 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~- 143 (605)
..+.-+|+.++++...+=.+..+..+-+...+......-.+. .+.+.+++=++.......-+ ..|..|+-.
T Consensus 48 Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~~lns-------~~G~~yhIsF 120 (572)
T KOG2466|consen 48 PVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFLVLNS-------RPGSDYHISF 120 (572)
T ss_pred cCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHHHHcc-------CCCcccccce
Confidence 445567999999999888887777777776666654411222 55555554444333222222 234455533
Q ss_pred ----hhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHH
Q 007398 144 ----RVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFA----TLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVIC 215 (605)
Q Consensus 144 ----~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (605)
|..||-+.+..--..-.+.-++.-..++...++.++ +.++... ....+++ -+.......+..+++-++..
T Consensus 121 pv~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~-hipntl~-~~~~tt~e~i~FfIFwv~s~ 198 (572)
T KOG2466|consen 121 PVLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFS-HIPNTLG-KPGTTTYEFIGFFIFWVASL 198 (572)
T ss_pred eeeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhh-cCccccC-CCCCchHHHHHHHHHHHHhh
Confidence 224443322221112222222222333333333333 3332211 0000111 11111222233444444444
Q ss_pred HHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhcccc--C-CCCccCCCChhHHHHHHHHHHHHhhhhhh----Hhhhh
Q 007398 216 ILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFANADT--K-NYKAFAPFGTRGVFKASAVLFFAYIGFDA----VSTMA 288 (605)
Q Consensus 216 ~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~--~-~~~~~~~~g~~~~~~~~~~~~~~~~G~e~----~~~~a 288 (605)
.+.+++.....++...-.+......+.+.+..+...+. + +..+....+..-.+.-+-....++.++.. ....+
T Consensus 199 ~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFs 278 (572)
T KOG2466|consen 199 PFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFS 278 (572)
T ss_pred heeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhH
Confidence 45566777777777666666666655666666554432 1 11112222221112222233344444444 33444
Q ss_pred hhhcCCCCchhhHHHHHHHHHHHH-HHHHHHHHHhccc--ccccCCC---ChHHHHHH------HhChhHHHHHHHHHHH
Q 007398 289 EETKNPAKDIPIGLVGSMAVTTLA-YCLLAIALCLMQP--YYAINVD---APFSVAFE------AVGWDWAKYVVAFGAL 356 (605)
Q Consensus 289 ~E~k~p~r~vp~ai~~~~~~~~v~-y~l~~~~~~~~~~--~~~~~~~---~p~~~~~~------~~g~~~~~~~~~~~~~ 356 (605)
.-.|+| .+.+++.+++.-+ +.+..+ +...+. .+.+... +|+..+-+ ..|.+.+..++.++..
T Consensus 279 RF~ksp-----~a~~~~Ql~alp~~~~l~~l-iGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~RAgvFfi~~~f~ 352 (572)
T KOG2466|consen 279 RFAKSP-----NAIWWGQLIALPLPFGLTPL-IGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGARAGVFFIGFGFA 352 (572)
T ss_pred hhcCCC-----Cccchhhhhhhhhhhhhhhh-eeeEehhhhhhhhcccccCHHHHHHHHhccccccccchhhhHHHHHHH
Confidence 444554 3334444433222 222221 111111 1222221 35433222 2366677778888888
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhcCCCchhhhh
Q 007398 357 KGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQ 389 (605)
Q Consensus 357 ~~~~~~~~~~~~~~sR~l~a~Ardg~lP~~f~~ 389 (605)
++.++...+.-..+ -++.-.+++||++.-
T Consensus 353 laql~~NISan~va----agnDl~~L~PkyinI 381 (572)
T KOG2466|consen 353 LAQLGTNISANSVA----AGNDLSALLPKYINI 381 (572)
T ss_pred HHHHhcchhccccc----cchhhHhhCcceEEe
Confidence 88887655432222 233344788887654
|
|
| >PLN00149 potassium transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.32 Score=54.31 Aligned_cols=222 Identities=14% Similarity=0.153 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhh---ccccCCCCccCCC---------ChhHHHHHHH
Q 007398 205 PIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFA---NADTKNYKAFAPF---------GTRGVFKASA 272 (605)
Q Consensus 205 ~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~---~~~~~~~~~~~~~---------g~~~~~~~~~ 272 (605)
.+++++++.+..+--+|....+ ..+..+.++=++.+...|+. +.++.-+..+.|. +..+ +..+.
T Consensus 200 ~is~~ILv~LF~~Q~~GT~kvg---~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g-~~~LG 275 (779)
T PLN00149 200 PVACIILIGLFALQHYGTHRVG---FLFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGG-WMSLG 275 (779)
T ss_pred HHHHHHHHHHHHHhccccHHHh---hhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCce-eEeec
Confidence 4666666666667777765544 45555555555555555544 3334333333331 1111 12344
Q ss_pred HHHHHhhhhhhH-hhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHhChhHHHHHH
Q 007398 273 VLFFAYIGFDAV-STMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVV 351 (605)
Q Consensus 273 ~~~~~~~G~e~~-~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 351 (605)
.++.+.+|-|+- +.++.=- +|.+-+|-..-+.=+.++--+...++..--|...-+-.+||... ..+++.+-+
T Consensus 276 gV~L~iTG~EALyADlGHF~---~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~----iP~~~~~P~ 348 (779)
T PLN00149 276 GILLCITGSEAMFADLGHFS---QLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVS----VPEKLRWPV 348 (779)
T ss_pred chhhcccchhhhhhcccCCC---ccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHh----CCchhHHHH
Confidence 456888999975 4444433 34454444433333333322233333332222111223455433 223443433
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCch-hhhhhcCCCc----chhHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 007398 352 AFGALKGMTTVLLVSAVGQARYLTHIARTHMMPP-WLAQVHGKTG----TPVNATIVMLTATAIIAFFTKLNVLSNLLSI 426 (605)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP~-~f~~~~~r~~----~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (605)
.+.+.++..-+..+.+.++=-+..+.-+-|.+|+ ..-+++++.. .|..-.+++....++...+.+-+.+.+..++
T Consensus 349 ~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGi 428 (779)
T PLN00149 349 LVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASGL 428 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhhh
Confidence 3333333333334444444455555556799994 2334443333 4555444444433334444567777777777
Q ss_pred HHHHHHHHHHH
Q 007398 427 STLFIFMLVAV 437 (605)
Q Consensus 427 ~~~~~y~~~~~ 437 (605)
+.....++..+
T Consensus 429 AV~~vM~iTT~ 439 (779)
T PLN00149 429 AVITVMLVTTC 439 (779)
T ss_pred hhehHHHHHHH
Confidence 76665555443
|
|
| >COG4147 DhlC Predicted symporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.4 Score=46.20 Aligned_cols=254 Identities=12% Similarity=0.073 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhh-hhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007398 108 VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYL-RVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQP 186 (605)
Q Consensus 108 ~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~-~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~ 186 (605)
...+|..+. ....++.+|--+++-+-- .-++. .|.-.+..-.+++....+...+.......+.+..+..+++.+.
T Consensus 79 Y~iG~~~Gy---~i~~fL~A~~LRk~GkyT-~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~ 154 (529)
T COG4147 79 YSIGWTGGY---PILLFLIAEYLRKLGKYT-FADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPY 154 (529)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhcCCcc-hHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCc
Confidence 334444433 334567777777763221 33333 3444566667777766666677777777788888888877532
Q ss_pred CcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhccccC------------
Q 007398 187 EDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFANADTK------------ 254 (605)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~------------ 254 (605)
. ..+.++.++......+-|+|...|.|.+=.++.+...++..+....+.+.+
T Consensus 155 ~----------------vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~ 218 (529)
T COG4147 155 H----------------VGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVH 218 (529)
T ss_pred e----------------eehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcC
Confidence 1 133444555555666789999999887776666665554444433322110
Q ss_pred ---CCCccCCCCh--hHHHHHHHHHHHHhhhhhhHhhhhhhhc-CC-CCchhhHHHHHHHHHHHHHHHHHHHHHh----c
Q 007398 255 ---NYKAFAPFGT--RGVFKASAVLFFAYIGFDAVSTMAEETK-NP-AKDIPIGLVGSMAVTTLAYCLLAIALCL----M 323 (605)
Q Consensus 255 ---~~~~~~~~g~--~~~~~~~~~~~~~~~G~e~~~~~a~E~k-~p-~r~vp~ai~~~~~~~~v~y~l~~~~~~~----~ 323 (605)
+.....+.|. ...+..+...+--..|.-.-.|.--..- -| -|+..|+..+++..+.++|+...+.-.+ +
T Consensus 219 ~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v 298 (529)
T COG4147 219 PKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGARLLV 298 (529)
T ss_pred cccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0001111121 1233333333344456666666532210 11 2455677788888899999876544211 1
Q ss_pred c--ccc------------ccCC-------CChHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHH
Q 007398 324 Q--PYY------------AINV-------DAPFSVAFEAVG-WDWAKYVVAFGALKGMTTVLLVSAV----GQARYLTHI 377 (605)
Q Consensus 324 ~--~~~------------~~~~-------~~p~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~----~~sR~l~a~ 377 (605)
. |.. +.+. +.....+....+ +++..-+++.+.+...++..-+... +.||=+|.+
T Consensus 299 ~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~ 378 (529)
T COG4147 299 GTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAM 378 (529)
T ss_pred ccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHH
Confidence 1 111 1111 112223344666 5776667776666666555444333 345555654
Q ss_pred HhcC
Q 007398 378 ARTH 381 (605)
Q Consensus 378 Ardg 381 (605)
--++
T Consensus 379 vik~ 382 (529)
T COG4147 379 VIKK 382 (529)
T ss_pred HhCC
Confidence 4443
|
|
| >TIGR00794 kup potassium uptake protein | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.55 Score=51.98 Aligned_cols=275 Identities=16% Similarity=0.188 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhcc---ccCCCCccCC---------CChhHHHHHH
Q 007398 204 DPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFANA---DTKNYKAFAP---------FGTRGVFKAS 271 (605)
Q Consensus 204 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~---~~~~~~~~~~---------~g~~~~~~~~ 271 (605)
..+++++++.+..+--+|....++ .+..+.++=++.+.+.|+... ++.-+..+.| ++..+ +..+
T Consensus 169 v~it~~ILv~LF~iQ~~GT~kvg~---~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~-~~~L 244 (688)
T TIGR00794 169 VPISCIILVLLFLIQRFGTAKVGF---TFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVG-WVSL 244 (688)
T ss_pred hhHHHHHHHHHHHHhccccHHHhh---hhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCce-eeec
Confidence 356666666666676777655554 455555555555555554432 3332222222 12222 1234
Q ss_pred HHHHHHhhhhhhH-hhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHhChhHHHHH
Q 007398 272 AVLFFAYIGFDAV-STMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYV 350 (605)
Q Consensus 272 ~~~~~~~~G~e~~-~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 350 (605)
..++.+.+|-|+- +.++.=-| |.+-+|-..-+.-+.++--+..-++...-| + ...+|+... ..+|+.+.
T Consensus 245 G~V~L~iTGaEALyADmGHFg~---~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p-~--~~~NpFf~~----~P~~~~~p 314 (688)
T TIGR00794 245 GGVVLSITGVEAMFADLGHFGK---LPIQLAWFTFVYPSLILCYIGQAAYLSKHP-E--AIKNPFFLS----IPDWALWP 314 (688)
T ss_pred cchhheeccHhhhhcccCCCCc---ccceeehHHHHHHHHHHHHcchHHHHhcCc-c--hhcCcHHHh----CchHHHHH
Confidence 4566888999975 44443333 444444432222222222222222222212 1 124565543 33454444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCch-hhhhhcCCCc----chhHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 007398 351 VAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPP-WLAQVHGKTG----TPVNATIVMLTATAIIAFFTKLNVLSNLLS 425 (605)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP~-~f~~~~~r~~----~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 425 (605)
+.+.+.+++.-+..+.+.++=-+..+.-+-|.+|+ ..-+.+++.+ .|..-.+++....++...+.+-+.+.+..+
T Consensus 315 ~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYG 394 (688)
T TIGR00794 315 LFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYG 394 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhh
Confidence 44444444444444445555555556667799994 3334443322 355544444433333444456777888777
Q ss_pred HHHHHHHHHHHHHH-HHHhhhcCCCccccchhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHH
Q 007398 426 ISTLFIFMLVAVAL-LVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFL 495 (605)
Q Consensus 426 ~~~~~~y~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 495 (605)
++.....++..+.+ ++.++..+. + ....-.....++.+-...+..........||.++.+.+++..+
T Consensus 395 iaVt~tM~iTT~L~~~v~~~~w~~--~-~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~i~~~i 462 (688)
T TIGR00794 395 IAVTGTFLVTTCLMTVVMTIVWKW--N-IYFVALFLLVFLSVELIYFSSNLDKVPEGGWFPLSLSGIFMSV 462 (688)
T ss_pred hhhhhhhHHHHHHHHHHHHHHcCc--c-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 77766666655433 333433221 0 0111112222333444444444455555777665554444333
|
Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli. |
| >PRK09950 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=2.1 Score=46.16 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=61.5
Q ss_pred ccccChHHHHHHHhhhhccchhhhc-----------chHhHhhhcCc--------------hHHHHHHHHHHHHHHHHH-
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVL-----------TGQEARQEAGP--------------AVVLSFVVSGLSAMLSVF- 124 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~-----------~~~~~~~~~G~--------------~~~~~~il~~~~~~~~a~- 124 (605)
|.+++.++-++|.+++-+|.|+..- |.... . ++. ..+-+|.+-++..+..++
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~-e-~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~ 158 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNI-A-PRSPKALEYSVSYSFFHWGISAWATYALASLIMAYH 158 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCC-C-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5678888888998888888776541 11000 0 111 123346666666666666
Q ss_pred HHhhhhhccccCCchhhh----hhhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007398 125 CYTEFAVEIPVAGGSFAY----LRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQP 186 (605)
Q Consensus 125 ~~ael~s~~P~~GG~y~~----~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~ 186 (605)
.+.+-....--+...|.. .....|+..-.++-.....+-..+........+.-++.+++.+.
T Consensus 159 ~~~rk~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~ 224 (506)
T PRK09950 159 FHVRKNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPN 224 (506)
T ss_pred HHhhcCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 331221111111111111 12344555555666666666666666777777777778777654
|
|
| >PLN00148 potassium transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.62 Score=52.05 Aligned_cols=219 Identities=14% Similarity=0.107 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhh---ccccCCCCccCCC---------ChhHHHHHH
Q 007398 204 DPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFA---NADTKNYKAFAPF---------GTRGVFKAS 271 (605)
Q Consensus 204 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~---~~~~~~~~~~~~~---------g~~~~~~~~ 271 (605)
..+++++++.+..+--+|....++ .+..+.++=++.+...|+. +.++.-+..+.|. +..+ +..+
T Consensus 198 v~is~~ILv~LF~vQ~~GT~kVg~---~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~L 273 (785)
T PLN00148 198 VLLACVILVGLFALQHCGTHRVAF---MFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDG-WISL 273 (785)
T ss_pred hhHHHHHHHHHHHHhccccHHHHh---hhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCce-EEee
Confidence 356666666666777777655554 4555555544444555444 4334333333331 1111 1234
Q ss_pred HHHHHHhhhhhhH-hhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHhChhHHHHH
Q 007398 272 AVLFFAYIGFDAV-STMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYV 350 (605)
Q Consensus 272 ~~~~~~~~G~e~~-~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 350 (605)
..++.+.+|-|+- +.++.=- +|.+-+|-..-+.=+.++--+...++..--| + ..++||... -.++..+-
T Consensus 274 GgV~L~iTGaEALyADlGHFg---~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p-~--~~~npFf~~----iP~~~~~P 343 (785)
T PLN00148 274 GGILLSITGTEAMFADLGHFT---AASIRLAFATVIYPCLVVQYMGQAAFLSKNI-P--SIPNSFYDS----IPDPVFWP 343 (785)
T ss_pred cchheeccchhhhhhhccCCC---ccceEEeeeehHHHHHHHHHcchHHHHhcCc-c--cccCcHHHh----CCchhHHH
Confidence 4456788899975 4444433 3445444443333333322223333332222 1 124565433 22333333
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCch-hhhhhcCCCc----chhHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 007398 351 VAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPP-WLAQVHGKTG----TPVNATIVMLTATAIIAFFTKLNVLSNLLS 425 (605)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP~-~f~~~~~r~~----~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 425 (605)
+.+.+.++..-+..+.+.++=-+..+.-+-|.+|+ ..-+++++.. .|..-.+++....++...+.+-+.+.+..+
T Consensus 344 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYG 423 (785)
T PLN00148 344 VFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYG 423 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhh
Confidence 33333333333334444444445555556799994 2334443332 465555444444434444456677777777
Q ss_pred HHHHHHHHHHH
Q 007398 426 ISTLFIFMLVA 436 (605)
Q Consensus 426 ~~~~~~y~~~~ 436 (605)
++.....++..
T Consensus 424 iAV~~vM~iTT 434 (785)
T PLN00148 424 LACMTVMFITT 434 (785)
T ss_pred hheeeHHHHHH
Confidence 66655554443
|
|
| >COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.89 E-value=2.3 Score=43.04 Aligned_cols=277 Identities=12% Similarity=0.062 Sum_probs=146.9
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHH----HHHHHHHHHHHH-HHHHHhhhhhcccc------CCch
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVV----LSFVVSGLSAML-SVFCYTEFAVEIPV------AGGS 139 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~----~~~il~~~~~~~-~a~~~ael~s~~P~------~GG~ 139 (605)
.|++|.+-+.+...++-+++..|. +||++- ++|++-+.+..+ .-+++.-+++++.. +=-.
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFi---------gGpgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI 108 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFI---------GGPGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTI 108 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhc---------CCCcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeH
Confidence 466766544444333334443332 455422 345554444444 33445555554431 1123
Q ss_pred hhhhhh-hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHH
Q 007398 140 FAYLRV-ELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILA 218 (605)
Q Consensus 140 y~~~~~-~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (605)
.++.+. .-+++.-++.+....+.+...+.+.-.+.+..++...+.+-..- ++.. ...+...-.
T Consensus 109 ~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gidY~tg---------------L~if-a~~V~iYt~ 172 (473)
T COG4145 109 NDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTG---------------LLIF-AVSVAIYTA 172 (473)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhh---------------HHHH-HHHHHHHHh
Confidence 344443 45788889999999999999999999999999999887643211 1111 112222334
Q ss_pred HhcchhhhHHHHHHHHHHHHHHHHHHHHhhhcc-------------ccCCCCccCCCC--hhHHHHHH-HHHHHHhhhhh
Q 007398 219 VVSTKGSSRFNYIASIIHVIVILFIIIGGFANA-------------DTKNYKAFAPFG--TRGVFKAS-AVLFFAYIGFD 282 (605)
Q Consensus 219 ~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~-------------~~~~~~~~~~~g--~~~~~~~~-~~~~~~~~G~e 282 (605)
+-|.|.......+-..+.++..+++.+..+... |++-..|...+. -..+...+ ..+.+...|.-
T Consensus 173 fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP 252 (473)
T COG4145 173 FGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLP 252 (473)
T ss_pred hcceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCc
Confidence 567787777666666666665544444433221 121122221111 01122222 12223333433
Q ss_pred hHhhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHH--hcccccccCCCChHHHHHHHhChhHHHHHHHHHHHHHHH
Q 007398 283 AVSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALC--LMQPYYAINVDAPFSVAFEAVGWDWAKYVVAFGALKGMT 360 (605)
Q Consensus 283 ~~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~--~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 360 (605)
....-.-..|| +|.+.++|+++..++.++-+.+-++-. ..+-+|-...|.-.+..+-+.-.|...-++....+.+.+
T Consensus 253 ~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~~D~Vip~lalkvlpp~~agifl~apmaAiM 331 (473)
T COG4145 253 HTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIM 331 (473)
T ss_pred HHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCccchhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33333344577 588999999999888887666555421 122222223344444444455556555566666666777
Q ss_pred HHHHHHhhhhhHH
Q 007398 361 TVLLVSAVGQARY 373 (605)
Q Consensus 361 ~~~~~~~~~~sR~ 373 (605)
++.++.+.-.|-.
T Consensus 332 STIds~L~~~sst 344 (473)
T COG4145 332 STINSQLLQSSST 344 (473)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766555443
|
|
| >PLN00150 potassium ion transporter family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.66 Score=51.79 Aligned_cols=220 Identities=15% Similarity=0.155 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhh---ccccCCCCccCCC---------ChhHHHHHH
Q 007398 204 DPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFA---NADTKNYKAFAPF---------GTRGVFKAS 271 (605)
Q Consensus 204 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~---~~~~~~~~~~~~~---------g~~~~~~~~ 271 (605)
..+++++++.+..+--+|....++ .+..+.++=++.+...|+. +.++.-+..+.|. +..+ +..+
T Consensus 215 v~is~~ILv~LF~iQ~~GT~kVg~---~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~L 290 (779)
T PLN00150 215 TIISCVILVILFSLQRFGTHKVSF---LFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQG-WESL 290 (779)
T ss_pred hhhHHHHHHHHHHHHhccchhhhh---hhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCce-EEEe
Confidence 356677777777777777655544 4555555555555555554 3333323333331 1111 1134
Q ss_pred HHHHHHhhhhhhH-hhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHhChhHHHHH
Q 007398 272 AVLFFAYIGFDAV-STMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYV 350 (605)
Q Consensus 272 ~~~~~~~~G~e~~-~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 350 (605)
..++.+.+|-|+- +.++.=- +|.+-+|-..-+.=+.++--+...++...-| + ..++||... ..+++.+-
T Consensus 291 G~V~L~iTGaEALyADlGHFg---~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p-~--~~~npFf~~----iP~~~~~P 360 (779)
T PLN00150 291 GGIVLCMTGTEAMFADLGHFT---VKSMQIAFTSLVYPCLLLTYLGQAAYLVKHM-E--DVNDPFYRS----LPKPIYWP 360 (779)
T ss_pred cceeeeecchhhhhccccCCC---ccceeeeehhhHHHHHHHHHcchHHHHhcCc-c--cccCcHHHh----CCchhHHH
Confidence 4456788899875 4444333 3444444433332232222222222222112 1 123455433 23344343
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCch-hhhhhcCCCc----chhHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 007398 351 VAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPP-WLAQVHGKTG----TPVNATIVMLTATAIIAFFTKLNVLSNLLS 425 (605)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP~-~f~~~~~r~~----~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 425 (605)
+.+.+.++..-+..+.+.++=-+..+.-+-|.+|+ ..-+++++.. .|..-.+++....++...+.+-+.+.+..+
T Consensus 361 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYG 440 (779)
T PLN00150 361 IFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYG 440 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhh
Confidence 33333333333334444444455555566799994 2334443333 455544444433333344456777777777
Q ss_pred HHHHHHHHHHHH
Q 007398 426 ISTLFIFMLVAV 437 (605)
Q Consensus 426 ~~~~~~y~~~~~ 437 (605)
++.....++..+
T Consensus 441 iAV~~vM~iTT~ 452 (779)
T PLN00150 441 IAVVGVMIITTC 452 (779)
T ss_pred hheehhhHHHHH
Confidence 776655555443
|
|
| >COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.71 E-value=3.7 Score=43.96 Aligned_cols=85 Identities=15% Similarity=0.220 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcC-CCchhhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHH---HHHH
Q 007398 349 YVVAFGALKGMTTVLLVSAVGQARYLTHIARTH-MMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVL---SNLL 424 (605)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg-~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l---~~~~ 424 (605)
.+..+..++....-..+..-+++-++-.++..| .-|+..-|+- +++ ++++++..+.+.+.++.+ .-+.
T Consensus 405 ~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~-------W~v-~~~~ia~~lL~~ggl~aLqt~~ii~ 476 (537)
T COG1292 405 TLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVF-------WGV-LIGLIAAVLLLIGGLEALQTAAIIT 476 (537)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHHH-------HHH-HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 333443333333344455566777777777655 4444444432 333 445555555555544444 4444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007398 425 SISTLFIFMLVAVALLV 441 (605)
Q Consensus 425 ~~~~~~~y~~~~~~~~~ 441 (605)
+..+.+..++.+.++++
T Consensus 477 alPF~~vll~~~~sl~k 493 (537)
T COG1292 477 ALPFSLVLLVMMFSLIK 493 (537)
T ss_pred HccHHHHHHHHHHHHHH
Confidence 55555666666666665
|
|
| >PRK09928 choline transport protein BetT; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=7.1 Score=43.50 Aligned_cols=88 Identities=13% Similarity=-0.051 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHhhc---HHHHHHHHHH
Q 007398 350 VVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTK---LNVLSNLLSI 426 (605)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~---~~~l~~~~~~ 426 (605)
++....++..+....+..-+++-++-.++-.|.-|+ .--|+...=.++++ .+++++.+...+. .+...-+.++
T Consensus 410 i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~---~~pp~~~RifW~v~-ig~la~~LL~~GGL~aLQt~sii~al 485 (679)
T PRK09928 410 FSASVATITGLLFYVTSADSGALVLGNFTSKLKDIN---SDAPNWLRVFWSVA-IGLLTLGMLMTNGISALQNTTVIMGL 485 (679)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCC---CCCCcceeeHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333333333333444455556666666666553220 00112222334443 3334444444444 4445555556
Q ss_pred HHHHHHHHHHHHHHH
Q 007398 427 STLFIFMLVAVALLV 441 (605)
Q Consensus 427 ~~~~~y~~~~~~~~~ 441 (605)
.+.+..++.+.++++
T Consensus 486 Pf~~I~ll~~~sl~k 500 (679)
T PRK09928 486 PFSFVIFFVMAGLYK 500 (679)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666665
|
|
| >PRK10745 trkD potassium transport protein Kup; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=8 Score=42.44 Aligned_cols=273 Identities=16% Similarity=0.195 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhcc--ccCCCCccCC---------CChhHHHHHHH
Q 007398 204 DPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFANA--DTKNYKAFAP---------FGTRGVFKASA 272 (605)
Q Consensus 204 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~--~~~~~~~~~~---------~g~~~~~~~~~ 272 (605)
..+++++++.+..+--+|....+ ..+..+.++=++.+.+.|+... +++-+..+.| +++.+ +..+.
T Consensus 144 vpit~~ILv~LF~iQ~~GT~~vG---~~FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~~~~~g-f~~LG 219 (622)
T PRK10745 144 VPLSIIVLTLLFMIQKHGTGMVG---KLFAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFFLEYKTVS-FFALG 219 (622)
T ss_pred HHHHHHHHHHHHHHhccccHHHh---hhhhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHhCCCce-EEEec
Confidence 35666666666666666755544 4555555555555555555432 2222222222 11111 11334
Q ss_pred HHHHHhhhhhhH-hhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHhChhHHHHHH
Q 007398 273 VLFFAYIGFDAV-STMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVV 351 (605)
Q Consensus 273 ~~~~~~~G~e~~-~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 351 (605)
.++.+.+|-|+- +.++.= .+|.+.++-..-+.=+.++--+..-++...-| + ..++|+... ..+|+.+-+
T Consensus 220 ~V~L~vTGaEALYADmGHF---G~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p-~--~~~NpFf~~----~P~~~~~p~ 289 (622)
T PRK10745 220 AVVLAITGVEALYADMGHF---GKFPIRLAWFTVVLPSLVLNYFGQGALLLKNP-E--AIKNPFFLL----APDWALIPL 289 (622)
T ss_pred ceeeeccchHHHhhccCCC---CccceeeeehhhHHHHHHHHhcchHHHHhcCc-h--hhcCcHHHh----CChhHHHHH
Confidence 456788898875 333333 33455444443333233322222333322111 1 124566543 234444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCch-hhhhhcCCCc----chhHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 007398 352 AFGALKGMTTVLLVSAVGQARYLTHIARTHMMPP-WLAQVHGKTG----TPVNATIVMLTATAIIAFFTKLNVLSNLLSI 426 (605)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP~-~f~~~~~r~~----~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (605)
.+.+.+++.-+..+.+.++=-+..+.-+-|.+|+ ...+.+++.. .|..-.+++.....+...+.+-+.+.+..++
T Consensus 290 viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGi 369 (622)
T PRK10745 290 LILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGI 369 (622)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhh
Confidence 4444444443444444455455556667799994 3334443322 3544443333333333334566777777777
Q ss_pred HHHHHHHHHHHHH-HHHhhhcCCCccccchhHH-HHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHH
Q 007398 427 STLFIFMLVAVAL-LVRRYYVSGVTTTANQVKL-IVCILLILISSIATAAYWGLSKHGWIGYCITVPIWF 494 (605)
Q Consensus 427 ~~~~~y~~~~~~~-~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 494 (605)
+......+..+.+ ++.|++.+. ...... ....++++-...+..........||.++.+.+++..
T Consensus 370 AVt~tM~iTT~L~~~v~~~~w~~----~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~v~~~ 435 (622)
T PRK10745 370 AVTGTMVLTSILSTTVARKNWHW----NKYFVALILIAFLCIDIPLFSANLDKLLSGGWLPLSLGLVMFI 435 (622)
T ss_pred hheeHhHHHHHHHHHHHHHHcCc----cHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Confidence 7665555554433 333333111 011111 222233344444444445555577766555444433
|
|
| >TIGR00842 bcct choline/carnitine/betaine transport | Back alignment and domain information |
|---|
Probab=94.73 E-value=7 Score=41.63 Aligned_cols=42 Identities=12% Similarity=0.031 Sum_probs=27.0
Q ss_pred hhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007398 145 VELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQP 186 (605)
Q Consensus 145 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~ 186 (605)
..+|+..-.++-.....+-..+.+..+...+.-++.+++.+.
T Consensus 136 g~~g~~ID~l~v~ati~G~atsLGlg~~qi~~gl~~l~gi~~ 177 (453)
T TIGR00842 136 GPIGKAIDIMALVATLFGVATSLGLGAPQINAGLSALFGIPD 177 (453)
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCC
Confidence 345555555555666666666666677777777777777654
|
properties inherent to their polypeptide chains. |
| >PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=10 Score=41.02 Aligned_cols=114 Identities=10% Similarity=0.046 Sum_probs=57.8
Q ss_pred ccccChHHHHHHHhhhhccchhhhcc--hHhHhh-------hcCc-h-------------HHHHHHHHHHHHHHHHHHHh
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLT--GQEARQ-------EAGP-A-------------VVLSFVVSGLSAMLSVFCYT 127 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~--~~~~~~-------~~G~-~-------------~~~~~il~~~~~~~~a~~~a 127 (605)
|.+++.++-++|.+++-+|.|+..-. ...... ..+. . .+-+|.+-++..+..++.+
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~- 161 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFF- 161 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH-
Confidence 66788889999999888887765421 000000 0111 0 1223555555555555444
Q ss_pred hhhhcccc---CCchhhhhh-----hhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007398 128 EFAVEIPV---AGGSFAYLR-----VELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQP 186 (605)
Q Consensus 128 el~s~~P~---~GG~y~~~~-----~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~ 186 (605)
..+..|. +...|.... ..+|+..-.++-+....+-..+....+...+.-++.+++.+.
T Consensus 162 -y~~~~p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~ 227 (504)
T PRK03356 162 -FVRKMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPH 227 (504)
T ss_pred -HhcCCCcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 3344442 222222222 223344444444455555555555566666677777777654
|
|
| >PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses | Back alignment and domain information |
|---|
Probab=93.28 E-value=15 Score=40.28 Aligned_cols=96 Identities=16% Similarity=0.233 Sum_probs=51.4
Q ss_pred HHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhccc---------cCCCCccCCCChhHHHHHHHHHHHHh-hhhhhHhhh
Q 007398 218 AVVSTKGSSRFNYIASIIHVIVILFIIIGGFANAD---------TKNYKAFAPFGTRGVFKASAVLFFAY-IGFDAVSTM 287 (605)
Q Consensus 218 ~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~~~~~-~G~e~~~~~ 287 (605)
...|+|..+|+.......-.+.++++.+-++...+ ..++.... +..-+..++..++|++ .|+.....+
T Consensus 195 i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~--~~~vW~~A~~Q~ffsl~ig~G~~it~ 272 (523)
T PF00209_consen 195 IWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLL--DPKVWIAALGQVFFSLSIGFGIMITY 272 (523)
T ss_dssp TTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTT--SHHHHHHHHHHHHHHTTTTSSHHHHH
T ss_pred eEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhh--HHHHHHHHHHHHhhccCCCcceEEEE
Confidence 34677777777665554333333333332221110 11222221 1233577888888888 588888888
Q ss_pred hhhhcCCCCchhhHHHHHHHHHHHHHHHH
Q 007398 288 AEETKNPAKDIPIGLVGSMAVTTLAYCLL 316 (605)
Q Consensus 288 a~E~k~p~r~vp~ai~~~~~~~~v~y~l~ 316 (605)
+.-.|+ ++|++|...........+.++.
T Consensus 273 ~Sy~~~-~~n~~~~a~~v~~~~~~~slla 300 (523)
T PF00209_consen 273 GSYNKF-KNNIFRDALIVAFINTLVSLLA 300 (523)
T ss_dssp HTTS-T-TS-SHHHHHHHHHHHHHHHHTT
T ss_pred cCcCCC-CccccccceEEEcCchhhhHhH
Confidence 888877 6788887766666555554433
|
High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B .... |
| >PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function | Back alignment and domain information |
|---|
Probab=89.48 E-value=17 Score=38.34 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=51.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHhChhHHHHHHHH---HHHHHHHHHHHHHhhhhh
Q 007398 295 AKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWAKYVVAF---GALKGMTTVLLVSAVGQA 371 (605)
Q Consensus 295 ~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~s 371 (605)
+|-+|-+.+.+++++.+.+++.... .+.+|. +..+..+.... .++.+ ..++-..+
T Consensus 14 er~lPD~fvFAilLT~iv~~~a~~~----------t~~~p~-~~v~~Wg~GfW-~LL~F~MQM~LilvtG---------- 71 (453)
T PF02667_consen 14 ERYLPDPFVFAILLTFIVFVLALLL----------TGQSPL-EMVEAWGDGFW-SLLAFAMQMALILVTG---------- 71 (453)
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHHh----------cCCCHH-HHHHHHhccHH-HHHHHHHHHHHHHHHH----------
Confidence 4788999999988888877644322 123343 34444433211 11111 11111111
Q ss_pred HHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHHHHHHh
Q 007398 372 RYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFF 414 (605)
Q Consensus 372 R~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~ 414 (605)
|++|.....-|.+.|+-+.-++|..|+.+..+++.+.+++
T Consensus 72 ---~~lA~sp~v~r~l~~lA~~p~t~~~Ai~lv~~vs~i~s~i 111 (453)
T PF02667_consen 72 ---YALASSPPVKRLLDRLASLPKTPRQAIVLVALVSMIASWI 111 (453)
T ss_pred ---HHHhCChHHHHHHHHHHhcCCCCcceeeHHHHHHHHHHHH
Confidence 2333333333556666656788999999888888665554
|
|
| >KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.85 E-value=13 Score=40.55 Aligned_cols=221 Identities=10% Similarity=0.057 Sum_probs=108.7
Q ss_pred CchhhhhhhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHH-H
Q 007398 137 GGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVI-C 215 (605)
Q Consensus 137 GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 215 (605)
...|.|.+..|++....+....+.+..+.........-+..++...+.+-. +...++..++ .
T Consensus 108 ~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~~~-----------------l~~~~~~~ic~~ 170 (585)
T KOG2349|consen 108 TTMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGINLY-----------------LIVVILGLICVF 170 (585)
T ss_pred eehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhccCce-----------------eehHHHHHHHHH
Confidence 368999999999886666666666665555555555555555555543211 1111122222 2
Q ss_pred HHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhhccc-------------cCCC------CccCCCChhHHHHHHHHHHH
Q 007398 216 ILAVVSTKGSSRFNYIASIIHVIVILFIIIGGFANAD-------------TKNY------KAFAPFGTRGVFKASAVLFF 276 (605)
Q Consensus 216 ~i~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~-------------~~~~------~~~~~~g~~~~~~~~~~~~~ 276 (605)
.-.+-|+|..-+...+=+.+.+.....+++.+..... ..|. .|...+.+..++.|-.....
T Consensus 171 YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l 250 (585)
T KOG2349|consen 171 YTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWL 250 (585)
T ss_pred HHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHH
Confidence 2345677888888888788888877777776654211 0111 11111222335555555555
Q ss_pred HhhhhhhH-hhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHh-------ccccc--cc-CCCChHHHHHHHhCh-
Q 007398 277 AYIGFDAV-STMAEETKNPAKDIPIGLVGSMAVTTLAYCLLAIALCL-------MQPYY--AI-NVDAPFSVAFEAVGW- 344 (605)
Q Consensus 277 ~~~G~e~~-~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~-------~~~~~--~~-~~~~p~~~~~~~~g~- 344 (605)
.+.|.+.. .+----.|+ .|...++++.......+...+....-.. +.|.. .. .+|.-++.......+
T Consensus 251 ~~~~vnQ~~VQR~lsl~s-lk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d~~~~ 329 (585)
T KOG2349|consen 251 SYYGVNQLIVQRYLSLPS-LKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFVMDLMGH 329 (585)
T ss_pred HHHhhhHHHHhHHhcccc-HHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHHHHhcCC
Confidence 66666654 222222222 3445555555554444443332222111 11111 11 123322333332222
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 007398 345 -DWAKYVVAFGALKGMTTVLLVSAVGQARYLT 375 (605)
Q Consensus 345 -~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 375 (605)
+...-++..+...+.++++-+.+++.|-+.+
T Consensus 330 ~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~ 361 (585)
T KOG2349|consen 330 LPGLRGLFIAVVFSAALSSLSSIFNSLSTVFL 361 (585)
T ss_pred CCCccchhHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 2233344455555666666666666666655
|
|
| >TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=87.66 E-value=39 Score=36.93 Aligned_cols=34 Identities=9% Similarity=0.205 Sum_probs=21.6
Q ss_pred HHhccCCCCCCcccccccc----HHHHHHHHHHHHHHh
Q 007398 501 AVFVPQARAPKLWGVPLVP----WLPSASIAINIFLLG 534 (605)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~ 534 (605)
..+.++++.+|+||.|..| +...++.+..++.+.
T Consensus 384 ~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v 421 (507)
T TIGR00910 384 VLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFF 421 (507)
T ss_pred HHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHh
Confidence 3455566778899998765 455556655555543
|
Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 |
| >TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters | Back alignment and domain information |
|---|
Probab=85.05 E-value=54 Score=34.42 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=29.8
Q ss_pred HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007398 336 SVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHI 377 (605)
Q Consensus 336 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 377 (605)
.+..+..-+++...++.++.+.+..++..+..++..=++..+
T Consensus 283 ~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 283 GVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444556778888899999888888888877666555544
|
This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 605 | ||||
| 3gi8_C | 444 | Crystal Structure Of Apct K158a Transporter Bound T | 2e-08 | ||
| 3gi9_C | 444 | Crystal Structure Of Apct Transporter Bound To 7f11 | 2e-08 | ||
| 3lrb_A | 445 | Structure Of E. Coli Adic Length = 445 | 9e-05 | ||
| 3ob6_A | 445 | Structure Of Adic(N101a) In The Open-To-Out Arg+ Bo | 9e-05 | ||
| 3l1l_A | 445 | Structure Of Arg-Bound Escherichia Coli Adic Length | 1e-04 | ||
| 3ncy_A | 445 | X-Ray Crystal Structure Of An Arginine Agmatine Ant | 2e-04 | ||
| 4dji_A | 511 | Structure Of Glutamate-Gaba Antiporter Gadc Length | 3e-04 |
| >pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 | Back alignment and structure |
|
| >pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 | Back alignment and structure |
|
| >pdb|3LRB|A Chain A, Structure Of E. Coli Adic Length = 445 | Back alignment and structure |
|
| >pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound Conformation Length = 445 | Back alignment and structure |
|
| >pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic Length = 445 | Back alignment and structure |
|
| >pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter (Adic) In Complex With A Fab Fragment Length = 445 | Back alignment and structure |
|
| >pdb|4DJI|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc Length = 511 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 | Back alignment and structure |
|---|
Score = 345 bits (886), Expect = e-113
Identities = 79/425 (18%), Positives = 170/425 (40%), Gaps = 24/425 (5%)
Query: 68 HEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYT 127
K L+ W+ + +G +IGA IF + G A + AG + +F++SG+ A+L + YT
Sbjct: 2 ELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLVAYSYT 60
Query: 128 EFAVEIPVAGGSFAYLRVELGD-FVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQP 186
+ +I G A++ +GD + + + + YVI A A+ + YF L N
Sbjct: 61 KLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLIN--- 117
Query: 187 EDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIIIG 246
P + + +G+ A L +K R + ++ ++++ I
Sbjct: 118 ---------APINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFA 168
Query: 247 GFANADTKNYK-AFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGS 305
G AP G+ ASA+ F +Y+GF ++ +E +NP K++P + S
Sbjct: 169 GLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFIS 228
Query: 306 MAVTTLAYCLLAIALCLMQPYYAI--NVDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVL 363
+ + Y +AI+ P + + +VA + + +++ GAL +++ +
Sbjct: 229 ILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAM 288
Query: 364 LVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNL 423
+ G A +A+ +P + + + + A + ++++
Sbjct: 289 NATIYGGANVAYSLAKDGELPEFFERKVWF--KSTEGLYITSALGVLFALLFNMEGVASI 346
Query: 424 LSISTLFIFMLVAVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGW 483
S + I++ V ++ + + +I +++L + Y ++
Sbjct: 347 TSAVFMVIYLFVILSHYILID-----EVGGRKEIVIFSFIVVLGVFLLLLYYQWITNRFV 401
Query: 484 IGYCI 488
I
Sbjct: 402 FYGII 406
|
| >3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 5/64 (7%), Positives = 19/64 (29%)
Query: 500 LAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGSIDRASFARFGVWTVILLLYYIFFG 559
L+ ++ + + ++ + + + I + T I +L +
Sbjct: 360 LSHYILIDEVGGRKEIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIY 419
Query: 560 LHAS 563
+
Sbjct: 420 RKVT 423
|
| >3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 | Back alignment and structure |
|---|
Score = 239 bits (611), Expect = 1e-72
Identities = 96/446 (21%), Positives = 174/446 (39%), Gaps = 37/446 (8%)
Query: 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFC 125
S + + GA++G+G+F+L A G + ++V+ + A+
Sbjct: 2 SSDADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSMV 59
Query: 126 YTEFAVEIPVAGGSFAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQ 185
Y + + P GGS+AY R G F+ + L IG A+ Y +
Sbjct: 60 YAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYF---- 115
Query: 186 PEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIII 245
+ +D L V V + +L +V K +R +A+++ +I I+ I +
Sbjct: 116 --------FPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAV 167
Query: 246 GGFANADTKNYKAFAPFGTRGVF----KASAVLFFAYIGFDAVSTMAEETKNPAKDIPIG 301
G+ + Y A G F V +++IG ++ S A KNP +++PI
Sbjct: 168 FGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIA 227
Query: 302 LVGSMAVTTLAYCLLAIALCLMQPYYAINV-DAPFSVAFEAVGWDWAKYVVAFGALKGMT 360
+G + + + Y L A+ M P A+ V +PF A D A +V+F A G
Sbjct: 228 TIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCL 287
Query: 361 TVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAIIAFFT----- 415
L + + A + PP A+V+ K GTPV I++ I +
Sbjct: 288 GSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNA 346
Query: 416 --KLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQVK----LIVCILLILISS 469
+ ++S++ I TL ++ ALL+ + G A + CI ++ S
Sbjct: 347 TKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVGSG 406
Query: 470 IATAAYWGLSKHGWIGYCITVPIWFL 495
+ ++ + ++ L
Sbjct: 407 AKEVMW------SFVTLMVITAMYAL 426
|
| >4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 2e-66
Identities = 86/502 (17%), Positives = 174/502 (34%), Gaps = 48/502 (9%)
Query: 69 EMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSV-FCYT 127
+T L G A+ + + + +G ++V ++ G+ + V C
Sbjct: 3 TSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVFFLLLGGILWFIPVGLCAA 62
Query: 128 EFAVEIPVAGGS-FAYLRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQP 186
E A G FA++ LG F A L+ IG + + +
Sbjct: 63 EMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYI----- 117
Query: 187 EDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRFNYIASIIHVIVILFIII- 245
+ ++ ED A+ + + + TK ++R + +++ FI+I
Sbjct: 118 ----LKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIA 173
Query: 246 --------GGFANADTKNYKAFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKD 297
G + + F F G +Y+G +A +T E NP +D
Sbjct: 174 LAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRD 233
Query: 298 IPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAV------GWDWAKYVV 351
P+ ++ M + +++ ++ P IN+ A F + +W V+
Sbjct: 234 YPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVI 293
Query: 352 AFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATAII 411
+ L G+ + VG +R + A+ +++P A+++ K G PV I L T+I
Sbjct: 294 SALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIA 352
Query: 412 AFFTKL---------NVLSNLLSISTLFIFMLVAVALLV---------RRYYVSGVTTTA 453
+ L + L + ++ + +V R + + G
Sbjct: 353 LIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVK 412
Query: 454 NQVK---LIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAP 510
V L+ I+ ++S + G S ++ + + L ++ V +
Sbjct: 413 LVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILYAVHDRKGK 472
Query: 511 KLWGVPLVPWLPSASIAINIFL 532
GV L P + + FL
Sbjct: 473 ANTGVTLEPINSQNAPKGHFFL 494
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| 3l1l_A | 445 | Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC | 100.0 | |
| 3gia_A | 444 | Uncharacterized protein MJ0609; membrane protein, | 100.0 | |
| 4djk_A | 511 | Probable glutamate/gamma-aminobutyrate antiporter; | 100.0 | |
| 2jln_A | 501 | MHP1; hydantoin, transporter, membrane protein, nu | 99.42 | |
| 3dh4_A | 530 | Sodium/glucose cotransporter; membrane protein, sy | 98.74 | |
| 2xq2_A | 593 | Sodium/glucose cotransporter; transport protein, i | 98.71 | |
| 2a65_A | 519 | Leutaa, Na(+):neurotransmitter symporter (SNF fami | 97.82 | |
| 4ain_A | 539 | Glycine betaine transporter BETP; membrane protein | 96.09 | |
| 2wsw_A | 509 | BCCT family betaine/carnitine/choline transporter; | 93.68 |
| >3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-52 Score=444.37 Aligned_cols=416 Identities=22% Similarity=0.285 Sum_probs=353.4
Q ss_pred cccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhh
Q 007398 68 HEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVEL 147 (605)
Q Consensus 68 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 147 (605)
++.||++++++++++.++.++|+|+|..++... . +|+.++++|+++++++++.+++++|+++++|++||.|+|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~-~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA-S-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH-H-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH-H-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence 456899999999999999999999999988753 4 68888999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhH
Q 007398 148 GDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSR 227 (605)
Q Consensus 148 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 227 (605)
||.+|++.||.+++.+....+.....++++++..++...+.+. ..+++++++++++.+|++|+|..++
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~in~~g~~~~~~ 149 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWV------------LTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHH------------HHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHH------------HHHHHHHHHHHHHHHHHhchHHHHH
Confidence 9999999999999999999888888888888766543222222 2367888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCC-ccCCCC---hhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHH
Q 007398 228 FNYIASIIHVIVILFIIIGGFANADTKNYK-AFAPFG---TRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLV 303 (605)
Q Consensus 228 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~ 303 (605)
++.+++.++++.++++++.++.+.+.+++. ++.+.+ +.+++.++...+|+|.|+|..++++||+|||+|++||+++
T Consensus 150 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~ 229 (445)
T 3l1l_A 150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATI 229 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHH
Confidence 999999999999988888887766655542 333333 5578889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCC
Q 007398 304 GSMAVTTLAYCLLAIALCLMQPYYAIN-VDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHM 382 (605)
Q Consensus 304 ~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~ 382 (605)
.++.++.++|++..++.....|.+++. .++|+.++++..++++...++.+..+++.+++.++.+++.+|++++|||||.
T Consensus 230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~ 309 (445)
T 3l1l_A 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGL 309 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999988888764 4679999999887788888999999999999999999999999999999999
Q ss_pred CchhhhhhcCCCcchhHHHHHHHHHHHHHHHh-------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccch
Q 007398 383 MPPWLAQVHGKTGTPVNATIVMLTATAIIAFF-------TKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQ 455 (605)
Q Consensus 383 lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~ 455 (605)
+|++|+|+| |+++|+++++++.+++.++.++ ..++.+.++.++..++.|.+.+++++++|+|+| ++|
T Consensus 310 lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~r---- 383 (445)
T 3l1l_A 310 FPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GKA---- 383 (445)
T ss_dssp SCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GGG----
T ss_pred CcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccc----
Confidence 999999999 6799999999999988766654 347899999999999999999999999887755 221
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHHHhc
Q 007398 456 VKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGS 535 (605)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 535 (605)
.|..|+.+.++.+.+++++..
T Consensus 384 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 404 (445)
T 3l1l_A 384 -----------------------------------------------------------RPAYLAVTTIAFLYCIWAVVG 404 (445)
T ss_dssp -----------------------------------------------------------CTTTHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------cchhHHHHHHHHHHHHHHHHH
Confidence 123556777777777777777
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhhcc
Q 007398 536 IDRASFARFGVWTVILLLYYIFFGLHA 562 (605)
Q Consensus 536 ~~~~~~~~~~~~~~i~~~~y~~~~~~~ 562 (605)
.++.......+++++++.+|+.++||+
T Consensus 405 ~~~~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 405 SGAKEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777788888999999998776655
|
| >3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-50 Score=430.36 Aligned_cols=365 Identities=21% Similarity=0.396 Sum_probs=327.6
Q ss_pred ccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhC
Q 007398 69 EMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELG 148 (605)
Q Consensus 69 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g 148 (605)
+.||+++.+++++++++.++|+|+|..++..... +||..+++|+++++++++.+++++|+++++|++||.|+|+++.+|
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~-~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G 81 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHH-HGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhC
Confidence 3589999999999999999999999999887766 888999999999999999999999999999999999999999999
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhH
Q 007398 149 DF-VAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSR 227 (605)
Q Consensus 149 ~~-~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 227 (605)
|. .+...+|.+++.|....+.++..+++++...++...+.+.. .+++++++++++.+|++|+|..++
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~in~~g~~~~~~ 149 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNI------------AITEIGIVAFFTALNFFGSKAVGR 149 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH------------HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH------------HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 96 35556899999999999999999999999888654433322 267888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCc-cCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHHH
Q 007398 228 FNYIASIIHVIVILFIIIGGFANADTKNYKA-FAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSM 306 (605)
Q Consensus 228 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~ 306 (605)
++.+++.++++.++++++.++...+.+|+.+ +.+.++.+++.++...+|+|.|+|..++++||+|||+|++||++..++
T Consensus 150 ~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~ 229 (444)
T 3gia_A 150 AEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISI 229 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHH
Confidence 9999999999999988888888777777665 445567788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccC--CCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCc
Q 007398 307 AVTTLAYCLLAIALCLMQPYYAIN--VDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMP 384 (605)
Q Consensus 307 ~~~~v~y~l~~~~~~~~~~~~~~~--~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP 384 (605)
.++.++|++..++.....|.+++. .+.|+.++++...+++...++.+..+++.+++.++.+++.||++++|||||.+|
T Consensus 230 ~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP 309 (444)
T 3gia_A 230 LIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELP 309 (444)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 999999999999998888887763 346888888877678888899999999999999999999999999999999999
Q ss_pred hhhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 007398 385 PWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSG 448 (605)
Q Consensus 385 ~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~ 448 (605)
++|+|+| | ++|.++++++++++.++.++.+++.+.++.+.+.+++|.+.+++++++|+++++
T Consensus 310 ~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 371 (444)
T 3gia_A 310 EFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGG 371 (444)
T ss_dssp SSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred HHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999998 4 569999999999999888888999999999999999999999999998887654
|
| >4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=432.93 Aligned_cols=434 Identities=18% Similarity=0.227 Sum_probs=324.9
Q ss_pred cccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHH-HHHHHHHhhhhh--ccccCCchhhh
Q 007398 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSA-MLSVFCYTEFAV--EIPVAGGSFAY 142 (605)
Q Consensus 66 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~-~~~a~~~ael~s--~~P~~GG~y~~ 142 (605)
++++++|+++++++++++++.++|. +..+. . ..+|+..++.+++++++. ++.+++++|+++ ++| +||.|+|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig~--~~~~~--~-~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMAV--YEYPT--F-ATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCCG--GGHHH--H-HTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHhh--chhHH--H-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhh
Confidence 5677899999999999999999863 33332 2 338888777777777665 569999999999 999 9999999
Q ss_pred hhhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHH
Q 007398 143 LRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNK---QPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAV 219 (605)
Q Consensus 143 ~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 219 (605)
+++.+||.+|+++||.++++++...+......+.++...+.. ..+.|. ..+++++++++++.+|+
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~------------~~~~~~~~~~~~~~in~ 146 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPIT------------KTIAALIILWALALTQF 146 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSH------------HHHHHHHHHHHHHHHHH
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHH------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888888888655311 112222 34778888999999999
Q ss_pred hcchhhhHHHHHHHHHHHH-HHHHHHHHhhhccc---c----CCCCccCCCC-hhHHHHHHHHHHHHhhhhhhHhhhhhh
Q 007398 220 VSTKGSSRFNYIASIIHVI-VILFIIIGGFANAD---T----KNYKAFAPFG-TRGVFKASAVLFFAYIGFDAVSTMAEE 290 (605)
Q Consensus 220 ~g~~~~~~~~~~~~~~~l~-~~~~~~i~~~~~~~---~----~~~~~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~~a~E 290 (605)
+|+|..++++++.+.++++ .++++++.++.... . .+..++.|+. ..+.+.++...+|+|.|+|.+++++||
T Consensus 147 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E 226 (511)
T 4djk_A 147 GGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNE 226 (511)
T ss_dssp TCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSS
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 9999999999999888544 35455555543221 1 1222333321 123445677789999999999999999
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHH----HHhC--hhHHHHHHHHHHHHHHHHHHH
Q 007398 291 TKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAF----EAVG--WDWAKYVVAFGALKGMTTVLL 364 (605)
Q Consensus 291 ~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~----~~~g--~~~~~~~~~~~~~~~~~~~~~ 364 (605)
+|||+|++|||++.++.++.++|++..+++....|+++...+++..+.+ +..| .++...++.+..+++.+++.+
T Consensus 227 ~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 306 (511)
T 4djk_A 227 MSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIA 306 (511)
T ss_dssp SSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988876655544433 3455 577888999999999999999
Q ss_pred HHhhhhhHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHH-HHHHhhc--------HHHHHHHHHHHHHHHHHHH
Q 007398 365 VSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATA-IIAFFTK--------LNVLSNLLSISTLFIFMLV 435 (605)
Q Consensus 365 ~~~~~~sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~-~~~~~~~--------~~~l~~~~~~~~~~~y~~~ 435 (605)
+.+++.||++++|||||.+|++|+|+| |+++|++|++++.++.. .+..+.+ ++.+.++.+++.+++|.+.
T Consensus 307 ~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~ 385 (511)
T 4djk_A 307 SWIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFML 385 (511)
T ss_dssp HHTTHHHHHTCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 57999999999854433 3333333 7899999999999999999
Q ss_pred HHHHHHHhhhcCCCccccchhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 007398 436 AVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGV 515 (605)
Q Consensus 436 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (605)
+++++++|+|+++.+||++ .+.++++.+.++++.+++.++..++.++|+..+....
T Consensus 386 ~~~~~~~r~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--- 441 (511)
T 4djk_A 386 FIGYIVLVLKHPDLKRTFN---------------------IPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDS--- 441 (511)
T ss_dssp HHHHHHHHHHCCSCCCSCC---------------------CSSTTHHHHHHHHHHHHHHHHHHHHTTCCCSCSTTCC---
T ss_pred HHHHHHHHHhCCCCCCCee---------------------cCCCchHHHHHHHHHHHHHHHHHHeeeeCCccccCCc---
Confidence 9999999988877777655 2333445456788888888888888888876332221
Q ss_pred ccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhcc
Q 007398 516 PLVPWLPSASIAINIFLLGSIDRASFARFGVWTVILLLYYIFFGLHA 562 (605)
Q Consensus 516 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 562 (605)
++||.. ...+++++++.++|+.|++++
T Consensus 442 -------------------~~~~~~-~~~~~~~~~~~i~~~~~~~~~ 468 (511)
T 4djk_A 442 -------------------TDMYVE-LLVVSFLVVLALPFILYAVHD 468 (511)
T ss_dssp -------------------CCCHHH-HHHHHHHHHHHHHHHHHHCC-
T ss_pred -------------------hHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 445544 345555566666676654433
|
| >2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-10 Score=119.93 Aligned_cols=281 Identities=11% Similarity=-0.018 Sum_probs=154.9
Q ss_pred cccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch---HHHHHHHHHHHHHHHHHHHhhhhhccccCCc-hhhhhhh
Q 007398 70 MKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA---VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGG-SFAYLRV 145 (605)
Q Consensus 70 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~il~~~~~~~~a~~~ael~s~~P~~GG-~y~~~~~ 145 (605)
.+|+.++++.+.+=++..+..+.+..-+... .|.. .+++.+++.++.... .+-++..-|+.|- .....+.
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~---~GLs~~~a~lai~lG~li~~~~---~~l~~~~G~~~Gl~~~v~~R~ 96 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMT---SSFQVWQVIVAIAAGCTIAVIL---LFFTQSAAIRWGINFTVAARM 96 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT---TTSCHHHHHHHHHHHHHHHHHH---HHHHTHHHHHHCCCHHHHTTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh---cCcCHHHHHHHHHHHHHHHHHH---HHHHhHHHhhcCCChhhhhHh
Confidence 3577899999999888887766654333322 2432 444445444444433 3334444444443 4457888
Q ss_pred hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhc
Q 007398 146 ELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLC----NKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVS 221 (605)
Q Consensus 146 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 221 (605)
.||+..+.+......+..+...+......++.+...+ +..+ . .+..+++.++...+.+.|
T Consensus 97 ~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~-~---------------~v~~~i~~~l~~~~~~~G 160 (501)
T 2jln_A 97 PFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTN-L---------------PLWIVIFGAIQVVTTFYG 160 (501)
T ss_dssp TSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-H---------------HHHHHHHHHHHHHHHTTH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-H---------------HHHHHHHHHHHHHHHHhC
Confidence 9999999888887777777666776666666665554 3221 1 133444555666777899
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhcccc--CCCCccCC-CChhHHHHHHHHH-HHHhhhhhhHhhhhhhhcCCCCc
Q 007398 222 TKGSSRFNYIASIIHVIVILFIIIGGFANADT--KNYKAFAP-FGTRGVFKASAVL-FFAYIGFDAVSTMAEETKNPAKD 297 (605)
Q Consensus 222 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~--~~~~~~~~-~g~~~~~~~~~~~-~~~~~G~e~~~~~a~E~k~p~r~ 297 (605)
.|...+++++...+.++.++.+.+..+...+. ++.....+ ....+++.++..+ .+...+.-..+.++.+.|+++..
T Consensus 161 ~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~ 240 (501)
T 2jln_A 161 ITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNA 240 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccc
Confidence 99999999999888877776666555544332 11111111 1122344444332 22223334567888888886541
Q ss_pred -----------hhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHhChhHH-HHHHH-HHHHHHHHHHHH
Q 007398 298 -----------IPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWA-KYVVA-FGALKGMTTVLL 364 (605)
Q Consensus 298 -----------vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~~-~~~~~~~~~~~~ 364 (605)
.-++...+..+...+..+..+..... ....+|...+.+...++.. ..+.. +.++++.+++..
T Consensus 241 ~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~ 315 (501)
T 2jln_A 241 SREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNP 315 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHH
T ss_pred cccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333332222222221111 1233465544443433322 55566 667777766655
Q ss_pred H-HhhhhhHHHHHH
Q 007398 365 V-SAVGQARYLTHI 377 (605)
Q Consensus 365 ~-~~~~~sR~l~a~ 377 (605)
. .+++.+--+..+
T Consensus 316 ~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 316 AANLLSPAYTLCST 329 (501)
T ss_dssp HHHTHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHh
Confidence 3 566666555544
|
| >3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-05 Score=84.28 Aligned_cols=288 Identities=14% Similarity=0.063 Sum_probs=140.1
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhCh
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGD 149 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 149 (605)
.|+++++-..+-..++.++...+......... .|.. ..+.|. +++.....+..+...-.+. +.-..++|.++.||+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 58899998887777777765555443333333 4544 333332 2222223333333333332 344689999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHH
Q 007398 150 FVAFVAAGNILLEYVI-GGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRF 228 (605)
Q Consensus 150 ~~g~~~g~~~~~~~~~-~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 228 (605)
....+.+....+.+.. ..+......+..++..++.+. + ..+.+..++.......-|.|...+.
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi~~--~--------------~~i~i~~~i~~~Yt~~GGl~aV~~T 159 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPL--M--------------YSILGLALFALVYSIYGGLSAVVWT 159 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCH--H--------------HHHHHHHHHHHHTTC------CCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--H--------------HHHHHHHHHHHHHHHhcchHHHHHH
Confidence 8887777665554433 334444455566677665421 1 0111111122222334588887777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc----------------ccCCCCcc----CC-----CChhHHHHHHHHHHHHhhhhhh
Q 007398 229 NYIASIIHVIVILFIIIGGFANA----------------DTKNYKAF----AP-----FGTRGVFKASAVLFFAYIGFDA 283 (605)
Q Consensus 229 ~~~~~~~~l~~~~~~~i~~~~~~----------------~~~~~~~~----~~-----~g~~~~~~~~~~~~~~~~G~e~ 283 (605)
+.+-.++.++..+++.+.++... +++++..+ .+ .++...+.+.......|.|.+.
T Consensus 160 D~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~q 239 (530)
T 3dh4_A 160 DVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQ 239 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHcCCH
Confidence 77766666655444333322110 11111111 01 1122112222222334455443
Q ss_pred -HhhhhhhhcCCCCchhhHHHHHHHHHHHHHHH---HHHHHHhccc----------------ccccCCCChHHHHHHHhC
Q 007398 284 -VSTMAEETKNPAKDIPIGLVGSMAVTTLAYCL---LAIALCLMQP----------------YYAINVDAPFSVAFEAVG 343 (605)
Q Consensus 284 -~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l---~~~~~~~~~~----------------~~~~~~~~p~~~~~~~~g 343 (605)
..+-.=..||+ |+..|+.+.+.....++.++ ..++.....+ ++..+.+..++...+ ..
T Consensus 240 ~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~-~l 317 (530)
T 3dh4_A 240 YIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ-FL 317 (530)
T ss_dssp HHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT-TC
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH-Hc
Confidence 33444446775 56778877776554332211 1111111110 112234556666665 55
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCC
Q 007398 344 WDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHM 382 (605)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~ 382 (605)
+++..-++..+++.+.+++..+.+++.|-.+ ++|=.
T Consensus 318 p~~l~Gl~~a~llAA~mST~ss~l~s~st~~---~~Diy 353 (530)
T 3dh4_A 318 PVGVKGVVFAALAAAIVSSLASMLNSTATIF---TMDIY 353 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HhHHH
Confidence 5677777777777778888777777776553 35543
|
| >2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A | Back alignment and structure |
|---|
Probab=98.71 E-value=0.00016 Score=79.02 Aligned_cols=283 Identities=13% Similarity=0.058 Sum_probs=141.6
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhCh
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGD 149 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 149 (605)
.|+++++-...-.+++.++...+......... .|.. ..+.|. ..+.....++.+...-.+. +.-..++|.++.||+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHccC
Confidence 47888886666555666665555433333223 4543 333332 2222233343344333333 344689999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHH
Q 007398 150 FVAFVAAGNILLEYVI-GGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRF 228 (605)
Q Consensus 150 ~~g~~~g~~~~~~~~~-~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 228 (605)
....+.+....+.+.. ..+......+..++..++.+. + ..+.+..++........|.|...+.
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi~~--~--------------~~i~i~~~i~~~Yt~~GGl~av~~T 188 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPL--M--------------YSILGLALFALVYSIYGGLSAVVWT 188 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCCH--H--------------HHHHHHHHHHHHHHHTTC---CCHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH--H--------------HHHHHHHHHHHHHHHhcchHHHHHH
Confidence 8887777655544433 344555555666777766421 1 0122222233344455788888887
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc----------------cCCCCccCCCC--------hhHHHH-HHHHHHHHhhhhhh
Q 007398 229 NYIASIIHVIVILFIIIGGFANAD----------------TKNYKAFAPFG--------TRGVFK-ASAVLFFAYIGFDA 283 (605)
Q Consensus 229 ~~~~~~~~l~~~~~~~i~~~~~~~----------------~~~~~~~~~~g--------~~~~~~-~~~~~~~~~~G~e~ 283 (605)
+.+-.+++++..+++.+.++...+ ++.+..+.+.+ +..... +.......+.|.+.
T Consensus 189 D~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q 268 (593)
T 2xq2_A 189 DVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQ 268 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCCh
Confidence 777777666655444433222110 11111111111 111121 12222334555553
Q ss_pred -HhhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHH---HHHHhc-cc--------------cccc-CCCChHHHHHHHhC
Q 007398 284 -VSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLA---IALCLM-QP--------------YYAI-NVDAPFSVAFEAVG 343 (605)
Q Consensus 284 -~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~---~~~~~~-~~--------------~~~~-~~~~p~~~~~~~~g 343 (605)
..+-.=+.||+ |+..|+.+.+.....++.++.. ++.... .+ ..+. +.+..++... ...
T Consensus 269 ~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~l 346 (593)
T 2xq2_A 269 YIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QFL 346 (593)
T ss_dssp SHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HTS
T ss_pred HHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HHc
Confidence 45566678886 6788888877665444333211 111111 00 1112 2344555555 566
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 007398 344 WDWAKYVVAFGALKGMTTVLLVSAVGQARYL 374 (605)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 374 (605)
+++..-++..+.+.+.+++..+.+.+.|-.+
T Consensus 347 p~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 347 PVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777788888777777666553
|
| >2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... | Back alignment and structure |
|---|
Probab=97.82 E-value=0.038 Score=58.47 Aligned_cols=236 Identities=15% Similarity=0.181 Sum_probs=121.6
Q ss_pred ChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHH----HHHHHHHHHHhhhhhccccCCchhhhhhhh---h
Q 007398 75 TWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSG----LSAMLSVFCYTEFAVEIPVAGGSFAYLRVE---L 147 (605)
Q Consensus 75 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~----~~~~~~a~~~ael~s~~P~~GG~y~~~~~~---~ 147 (605)
+..+-+.-++|..+|.|-.-..+....++||.+-++-+++.. +-.+..=+++.+.+++..+.|..-.|-+.. .
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~~~ 89 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRF 89 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCCcC
Confidence 455677778888899998889998888867765344444333 333333334444444344445444443211 1
Q ss_pred ChhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CC-CC-----------cchhhccCCCCC------c-Cch
Q 007398 148 GDFVAF---VAAGNILLEYVIGGAAVARSWTSYFATLCN--KQ-PE-----------DFRIIVHSMPED------Y-GQL 203 (605)
Q Consensus 148 g~~~g~---~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~--~~-~~-----------~~~~~~~~~~~~------~-~~~ 203 (605)
.+..|+ +.+......|....+-....+...+...++ .. ++ .+...+ +.+++ . ...
T Consensus 90 ~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l-~~~~~~~~~g~~~~~~ 168 (519)
T 2a65_A 90 AKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYI-GVPKGDEPILKPSLFA 168 (519)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHH-TCCSSSSCBCCCCHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHH-CCCCCcccccCccHHH
Confidence 122222 222222223322222222222222222211 11 00 011110 11100 0 112
Q ss_pred hHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHHHHHHHHhhhcccc-------------CCCCccCCCChhHHHH
Q 007398 204 DPIAVGVSAVICILAVVST-KGSSRFNYIASIIHVIVILFIIIGGFANADT-------------KNYKAFAPFGTRGVFK 269 (605)
Q Consensus 204 ~~~~~~~~~~~~~i~~~g~-~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-------------~~~~~~~~~g~~~~~~ 269 (605)
.+.-.++.++...+...|+ |...|..+++...-.+.++++.+-++...++ .+++... +...+..
T Consensus 169 ~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~--~~~vw~~ 246 (519)
T 2a65_A 169 YIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLK--DPGVWIA 246 (519)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTT--CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhC--CHHHHHH
Confidence 2333444555666677899 6789999988777666666655554433220 1111111 1234777
Q ss_pred HHHHHHHHh-hhhhhHhhhhhhhcCCCCchhhHHHHHHHHHHHHHH
Q 007398 270 ASAVLFFAY-IGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYC 314 (605)
Q Consensus 270 ~~~~~~~~~-~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~ 314 (605)
+...++|++ .|+.....++.-.|+ +.|++|.......+-..+-+
T Consensus 247 A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sl 291 (519)
T 2a65_A 247 AVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEV 291 (519)
T ss_dssp HHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHH
Confidence 888899998 588888888888776 67888877766666554433
|
| >4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.79 Score=48.10 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.6
Q ss_pred cccccChHHHHHHHhhhhccchhhh
Q 007398 70 MKKTLTWWDLIWFGIGAVIGAGIFV 94 (605)
Q Consensus 70 l~r~l~~~~~~~~~~~~~ig~gi~~ 94 (605)
-|-+++.++-++|.+++-+|.|+..
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~F 116 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLMF 116 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHHH
T ss_pred CCCCCcchHHHHHHHHHhhcchhee
Confidence 4567999999999999888888763
|
| >2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=7.8 Score=40.41 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=19.8
Q ss_pred cccccChHHHHHHHhhhhccchhhh
Q 007398 70 MKKTLTWWDLIWFGIGAVIGAGIFV 94 (605)
Q Consensus 70 l~r~l~~~~~~~~~~~~~ig~gi~~ 94 (605)
-|-+++.++-++|.+++-+|.|+..
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~f 111 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLF 111 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhh
Confidence 3557899999999999888877554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| d2a65a1 | 509 | Na(+):neurotransmitter symporter homologue LeuT {A | 97.39 |
| >d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: SNF-like superfamily: SNF-like family: SNF-like domain: Na(+):neurotransmitter symporter homologue LeuT species: Aquifex aeolicus [TaxId: 63363]
Probab=97.39 E-value=0.068 Score=54.39 Aligned_cols=40 Identities=25% Similarity=0.428 Sum_probs=29.1
Q ss_pred ChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHH
Q 007398 75 TWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVV 114 (605)
Q Consensus 75 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il 114 (605)
+..+.+.-++|..+|.|-+-..+.....+||..-++.|++
T Consensus 6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~ 45 (509)
T d2a65a1 6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYII 45 (509)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHH
Confidence 4567778888899999988888888877677653444433
|