Citrus Sinensis ID: 007467

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600--
MTEVELSRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE
cccccccccHHHHHccccccHHHHHHHHHcccccccccccccccccccCEEcccccccccccccccHHHccccccccccccccccccccccccccHHHHHHcEEEEEcccccccHHHHHHHHHHHHccccccccccccccccEEEEEEEcccccccccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEEEccccEEEEEEEEcccccHHHHHHHHHHHccccEEEEcEEEEECcccccccccccHHHHHHHHHHHHHcccHHHHHHHcccHHHHHccccEEEEcHHHHHHHHcccccccccccccccccccccEEEEEEccccEEEEEEEEEcccccccccccEEEEEEEEEEccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHcccccccccHHHHHHHHHcHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHc
***********************************************DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLG********************LNEKTPQEWARNVVL***************************************************************************************************************************************************************************
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MTEVELSRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVxxxxxxxxxxxxxxxxxxxxxxxx

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
H/ACA ribonucleoprotein complex subunit 4 Plays a central role in ribosomal RNA processing. Probable catalytic subunit of H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs.probableQ9LD90
Centromere/microtubule-binding protein CBF5 Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. May function as a pseudouridine synthase.probableO43100
Centromere/microtubule-binding protein CBF5 Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. May function as a pseudouridine synthase.probableO13473

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3ZV0, chain C
Confidence level:very confident
Coverage over the Query: 300-420
View the alignment between query and template
View the model in PyMOL
Template: 3U28, chain A
Confidence level:very confident
Coverage over the Query: 48-393
View the alignment between query and template
View the model in PyMOL
Template: 1I84, chain S
Confidence level:probable
Coverage over the Query: 443-479
View the alignment between query and template
View the model in PyMOL