Citrus Sinensis ID: 007467
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 602 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LD90 | 565 | H/ACA ribonucleoprotein c | yes | no | 0.757 | 0.807 | 0.804 | 0.0 | |
| O43102 | 487 | Centromere/microtubule-bi | yes | no | 0.627 | 0.776 | 0.746 | 1e-178 | |
| P33322 | 483 | H/ACA ribonucleoprotein c | yes | no | 0.637 | 0.795 | 0.716 | 1e-174 | |
| O43100 | 481 | Centromere/microtubule-bi | yes | no | 0.676 | 0.846 | 0.707 | 1e-174 | |
| O43101 | 479 | Centromere/microtubule-bi | N/A | no | 0.639 | 0.803 | 0.701 | 1e-173 | |
| P40615 | 509 | H/ACA ribonucleoprotein c | yes | no | 0.697 | 0.825 | 0.688 | 1e-172 | |
| Q5ZJH9 | 516 | H/ACA ribonucleoprotein c | yes | no | 0.710 | 0.829 | 0.676 | 1e-172 | |
| Q9ESX5 | 509 | H/ACA ribonucleoprotein c | yes | no | 0.717 | 0.848 | 0.648 | 1e-170 | |
| Q54T81 | 540 | Probable H/ACA ribonucleo | yes | no | 0.624 | 0.696 | 0.710 | 1e-170 | |
| O13473 | 474 | Centromere/microtubule-bi | yes | no | 0.636 | 0.808 | 0.715 | 1e-169 |
| >sp|Q9LD90|CBF5_ARATH H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana GN=CBF5 PE=1 SV=1 | Back alignment and function desciption |
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Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/482 (80%), Positives = 425/482 (88%), Gaps = 26/482 (5%)
Query: 1 MTEVELSRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSI 60
M EV++S S+KKK K +NDAA DT D++IKPQSFTP+I
Sbjct: 1 MAEVDISHSKKKKQDK------TENDAA----DTG------------DYMIKPQSFTPAI 38
Query: 61 DTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVA 120
DTSQWPILLKNYDRLNVRTGHYTP+ G+SPLKRPL +YIRYG+INLDKPANPSSHEVVA
Sbjct: 39 DTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVA 98
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLH VPDVA
Sbjct: 99 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVA 158
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
KVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD DRHLVVFW+SCEAGTY+R
Sbjct: 159 KVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIR 218
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
TMCVHLGL+LGVGGHMQELRRVRSGILGEN+NMVTMHDVMDAQ++YDN RDE+YLRRVIM
Sbjct: 219 TMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIM 278
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
PLE++LTSYKRLVVKD+ VNAICYGAKLMIPGLLRFENDI+VG EVVLMTTKGEA+A+GI
Sbjct: 279 PLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGI 338
Query: 361 AEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEK 420
AEMTT+VMATCDHGVVA+IKRVVMDRDTYPRKWGLGPRASMKKKLIA+GKLDKHGK NEK
Sbjct: 339 AEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEK 398
Query: 421 TPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKET--AG-VKKRKLDASGDSPA-LNAKK 476
TP EW+RNVVLP GGD+++A AAA E+ A+ E AG +KRK D S DSPA + KK
Sbjct: 399 TPVEWSRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAGEARKRKHDDSSDSPAPVTTKK 458
Query: 477 AK 478
+K
Sbjct: 459 SK 460
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Plays a central role in ribosomal RNA processing. Probable catalytic subunit of H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs. Arabidopsis thaliana (taxid: 3702) EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: - |
| >sp|O43102|CBF5_ASPFU Centromere/microtubule-binding protein cbf5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cbf5 PE=2 SV=1 | Back alignment and function description |
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| >sp|P33322|CBF5_YEAST H/ACA ribonucleoprotein complex subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CBF5 PE=1 SV=1 | Back alignment and function description |
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| >sp|O43100|CBF5_EMENI Centromere/microtubule-binding protein CBF5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cbf5 PE=2 SV=1 | Back alignment and function description |
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| >sp|O43101|CBF5_CANAL Centromere/microtubule-binding protein CBF5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CBF5 PE=3 SV=1 | Back alignment and function description |
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| >sp|P40615|DKC1_RAT H/ACA ribonucleoprotein complex subunit 4 OS=Rattus norvegicus GN=Dkc1 PE=1 SV=4 | Back alignment and function description |
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| >sp|Q5ZJH9|DKC1_CHICK H/ACA ribonucleoprotein complex subunit 4 OS=Gallus gallus GN=DKC1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9ESX5|DKC1_MOUSE H/ACA ribonucleoprotein complex subunit 4 OS=Mus musculus GN=Dkc1 PE=1 SV=4 | Back alignment and function description |
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| >sp|Q54T81|DKC1_DICDI Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum GN=nola4 PE=1 SV=1 | Back alignment and function description |
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| >sp|O13473|CBF5_KLULA Centromere/microtubule-binding protein CBF5 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CBF5 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 602 | ||||||
| 225440338 | 586 | PREDICTED: H/ACA ribonucleoprotein compl | 0.860 | 0.883 | 0.779 | 0.0 | |
| 224090025 | 593 | predicted protein [Populus trichocarpa] | 0.775 | 0.787 | 0.808 | 0.0 | |
| 255564866 | 581 | centromere/microtubule binding protein c | 0.747 | 0.774 | 0.833 | 0.0 | |
| 224139760 | 482 | predicted protein [Populus trichocarpa] | 0.699 | 0.873 | 0.860 | 0.0 | |
| 449486954 | 566 | PREDICTED: LOW QUALITY PROTEIN: H/ACA ri | 0.818 | 0.871 | 0.733 | 0.0 | |
| 356525850 | 555 | PREDICTED: H/ACA ribonucleoprotein compl | 0.906 | 0.983 | 0.763 | 0.0 | |
| 449439649 | 564 | PREDICTED: H/ACA ribonucleoprotein compl | 0.855 | 0.913 | 0.758 | 0.0 | |
| 297820502 | 561 | hypothetical protein ARALYDRAFT_486159 [ | 0.764 | 0.819 | 0.808 | 0.0 | |
| 356554746 | 589 | PREDICTED: H/ACA ribonucleoprotein compl | 0.686 | 0.701 | 0.822 | 0.0 | |
| 308080175 | 583 | uncharacterized protein LOC100502498 [Ze | 0.739 | 0.763 | 0.777 | 0.0 |
| >gi|225440338|ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/553 (77%), Positives = 463/553 (83%), Gaps = 35/553 (6%)
Query: 1 MTEVELSRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKD--FIIKPQSFTP 58
M+E+ELSRSEKKK K KS T+ D ++ T KD F+IKPQSFTP
Sbjct: 1 MSELELSRSEKKKKKNKS------------RTEALDVVEFGSDPTQKDGEFLIKPQSFTP 48
Query: 59 SIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEV 118
S+DTSQWPILLKNYDRLNVRTGHYTPLP+GYSPLKRPL +YIRYGI+NLDKPANPSSHEV
Sbjct: 49 SLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEV 108
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLH VPD
Sbjct: 109 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPD 168
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
VAKVARALE LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD DRHLVVFWISCEAGTY
Sbjct: 169 VAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTY 228
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
VRT+CVHLGLILGVGGHMQELRRVRSGILGE DNMVTMHDVMDAQW+YDNYRDE+YLRRV
Sbjct: 229 VRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNYRDESYLRRV 288
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
IMPLEV+LTSYKRLVVKD+ VNAICYGAKLMIPGLLRFEN+IE GEEVVLMTTKGEA+AL
Sbjct: 289 IMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGEEVVLMTTKGEAIAL 348
Query: 359 GIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLN 418
GIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRA+MKKKLI EGKL+KHGK N
Sbjct: 349 GIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRAAMKKKLITEGKLNKHGKPN 408
Query: 419 EKTPQEWARNVVLPPGGDSVVASLAAAAEQTV-----AEKETAG-VKKRKLDASGDSPAL 472
E TP EW RNVVLP GGDS+VASLAAA E TV ++E G +KRKL+ S D P
Sbjct: 409 ENTPSEWLRNVVLPTGGDSMVASLAAAVEPTVKAETDVKEEIDGEQRKRKLNESTDDPVT 468
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKT 532
K K+KK E+ +E +E EKKEKKKKKKK+KENG A EK
Sbjct: 469 VPAK---------------KIKKEIEEVSEFVETEKKEKKKKKKKEKENGDAALSDEEKA 513
Query: 533 EKVKAKKHKDKDE 545
KVK ++ +DKDE
Sbjct: 514 VKVKIEEDEDKDE 526
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090025|ref|XP_002308911.1| predicted protein [Populus trichocarpa] gi|222854887|gb|EEE92434.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255564866|ref|XP_002523427.1| centromere/microtubule binding protein cbf5, putative [Ricinus communis] gi|223537377|gb|EEF39006.1| centromere/microtubule binding protein cbf5, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224139760|ref|XP_002323264.1| predicted protein [Populus trichocarpa] gi|222867894|gb|EEF05025.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449486954|ref|XP_004157453.1| PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356525850|ref|XP_003531534.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449439649|ref|XP_004137598.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297820502|ref|XP_002878134.1| hypothetical protein ARALYDRAFT_486159 [Arabidopsis lyrata subsp. lyrata] gi|297323972|gb|EFH54393.1| hypothetical protein ARALYDRAFT_486159 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356554746|ref|XP_003545704.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|308080175|ref|NP_001183905.1| uncharacterized protein LOC100502498 [Zea mays] gi|238015364|gb|ACR38717.1| unknown [Zea mays] gi|413947018|gb|AFW79667.1| hypothetical protein ZEAMMB73_071792 [Zea mays] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 602 | ||||||
| TAIR|locus:2080625 | 565 | NAP57 "homologue of NAP57" [Ar | 0.702 | 0.748 | 0.840 | 7.8e-194 | |
| UNIPROTKB|A7YWH5 | 506 | DKC1 "Uncharacterized protein" | 0.702 | 0.835 | 0.648 | 1.7e-152 | |
| MGI|MGI:1861727 | 509 | Dkc1 "dyskeratosis congenita 1 | 0.696 | 0.823 | 0.654 | 3.2e-152 | |
| UNIPROTKB|Q5ZJH9 | 516 | DKC1 "H/ACA ribonucleoprotein | 0.694 | 0.810 | 0.665 | 8.5e-152 | |
| RGD|621780 | 509 | Dkc1 "dyskeratosis congenita 1 | 0.697 | 0.825 | 0.662 | 1.1e-151 | |
| ASPGD|ASPL0000074111 | 481 | swoC [Emericella nidulans (tax | 0.691 | 0.864 | 0.667 | 2.3e-151 | |
| UNIPROTKB|G4N1Q3 | 485 | MGG_07518 "Centromere/microtub | 0.671 | 0.832 | 0.684 | 3.7e-151 | |
| UNIPROTKB|E2R6Q8 | 464 | DKC1 "Uncharacterized protein" | 0.687 | 0.892 | 0.659 | 3.3e-150 | |
| UNIPROTKB|F6XRK3 | 517 | DKC1 "Uncharacterized protein" | 0.687 | 0.800 | 0.659 | 3.3e-150 | |
| UNIPROTKB|O60832 | 514 | DKC1 "H/ACA ribonucleoprotein | 0.697 | 0.817 | 0.646 | 4.2e-150 |
| TAIR|locus:2080625 NAP57 "homologue of NAP57" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1862 (660.5 bits), Expect = 7.8e-194, Sum P(2) = 7.8e-194
Identities = 358/426 (84%), Positives = 388/426 (91%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
++IKPQSFTP+IDTSQWPILLKNYDRLNVRTGHYTP+ G+SPLKRPL +YIRYG+INLD
Sbjct: 27 YMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLD 86
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC
Sbjct: 87 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 146
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
VARLH VPDVAKVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD DRHLVV
Sbjct: 147 VARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVV 206
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTY+RTMC MQELRRVRSGILGEN+NMVTMHDVMDAQ++YDN
Sbjct: 207 FWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDN 266
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
RDE+YLRRVIMPLE++LTSYKRLVVKD+ VNAICYGAKLMIPGLLRFENDI+VG EVVL
Sbjct: 267 SRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVL 326
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
MTTKGEA+A+GIAEMTT+VMATCDHGVVA+IKRVVMDRDTYPRKWGLGPRASMKKKLIA+
Sbjct: 327 MTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAD 386
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKET--AG-VKKRKLDA 465
GKLDKHGK NEKTP EW+RNVVLP GGD+++A AAA E+ A+ E AG +KRK D
Sbjct: 387 GKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAGEARKRKHDD 446
Query: 466 SGDSPA 471
S DSPA
Sbjct: 447 SSDSPA 452
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| UNIPROTKB|A7YWH5 DKC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| MGI|MGI:1861727 Dkc1 "dyskeratosis congenita 1, dyskerin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5ZJH9 DKC1 "H/ACA ribonucleoprotein complex subunit 4" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| RGD|621780 Dkc1 "dyskeratosis congenita 1, dyskerin" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000074111 swoC [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G4N1Q3 MGG_07518 "Centromere/microtubule-binding protein cbf5" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R6Q8 DKC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F6XRK3 DKC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O60832 DKC1 "H/ACA ribonucleoprotein complex subunit 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P40615 | DKC1_RAT | 5, ., 4, ., 9, 9, ., - | 0.6885 | 0.6976 | 0.8251 | yes | no |
| P33322 | CBF5_YEAST | 5, ., 4, ., 9, 9, ., - | 0.7161 | 0.6378 | 0.7950 | yes | no |
| Q5ZJH9 | DKC1_CHICK | 5, ., 4, ., 9, 9, ., - | 0.6766 | 0.7109 | 0.8294 | yes | no |
| O13473 | CBF5_KLULA | No assigned EC number | 0.7154 | 0.6362 | 0.8080 | yes | no |
| O44081 | DKC1_DROME | 5, ., 4, ., 9, 9, ., - | 0.6835 | 0.6528 | 0.7736 | yes | no |
| O14007 | CBF5_SCHPO | 5, ., 4, ., 9, 9, ., - | 0.6840 | 0.6893 | 0.8755 | yes | no |
| O17919 | DKC1_CAEEL | 5, ., 4, ., 9, 9, ., - | 0.6570 | 0.6345 | 0.8584 | yes | no |
| O43102 | CBF5_ASPFU | No assigned EC number | 0.7467 | 0.6279 | 0.7761 | yes | no |
| O43101 | CBF5_CANAL | No assigned EC number | 0.7012 | 0.6395 | 0.8037 | N/A | no |
| O43100 | CBF5_EMENI | No assigned EC number | 0.7073 | 0.6760 | 0.8461 | yes | no |
| O60832 | DKC1_HUMAN | 5, ., 4, ., 9, 9, ., - | 0.6263 | 0.6976 | 0.8171 | yes | no |
| Q54T81 | DKC1_DICDI | 5, ., 4, ., 9, 9, ., - | 0.7108 | 0.6245 | 0.6962 | yes | no |
| Q9ESX5 | DKC1_MOUSE | 5, ., 4, ., 9, 9, ., - | 0.6487 | 0.7176 | 0.8487 | yes | no |
| Q9LD90 | CBF5_ARATH | 5, ., 4, ., 9, 9, ., - | 0.8049 | 0.7574 | 0.8070 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.4.99 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00021307001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa) | |||||||||
(Vitis vinifera) | |||||||||||
 | GSVIVG00025475001 | • | • | • | 0.999 | ||||||
 | GSVIVG00037695001 | • | • | • | • | 0.982 | |||||
 | GSVIVG00019318001 | • | • | • | • | 0.978 | |||||
 | GSVIVG00024530001 | • | • | • | • | 0.954 | |||||
 | GSVIVG00019376001 | • | • | • | 0.953 | ||||||
 | GSVIVG00017910001 | • | • | • | • | 0.949 | |||||
 | GSVIVG00002292001 | • | • | • | • | 0.938 | |||||
 | GSVIVG00001285001 | • | • | • | • | 0.933 | |||||
 | GSVIVG00024035001 | • | • | • | • | 0.933 | |||||
 | GSVIVG00034206001 | • | • | • | • | 0.932 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 602 | |||
| TIGR00425 | 322 | TIGR00425, CBF5, rRNA pseudouridine synthase, puta | 0.0 | |
| cd02572 | 182 | cd02572, PseudoU_synth_hDyskerin, Pseudouridine sy | 1e-130 | |
| PRK04270 | 300 | PRK04270, PRK04270, H/ACA RNA-protein complex comp | 1e-129 | |
| COG0130 | 271 | COG0130, TruB, Pseudouridine synthase [Translation | 2e-88 | |
| cd00506 | 210 | cd00506, PseudoU_synth_TruB_like, Pseudouridine sy | 8e-65 | |
| cd02573 | 213 | cd02573, PseudoU_synth_EcTruB, Pseudouridine synth | 2e-48 | |
| pfam01509 | 149 | pfam01509, TruB_N, TruB family pseudouridylate syn | 4e-36 | |
| TIGR00431 | 209 | TIGR00431, TruB, tRNA pseudouridine(55) synthase | 2e-35 | |
| PRK01550 | 304 | PRK01550, truB, tRNA pseudouridine synthase B; Pro | 2e-35 | |
| PRK05033 | 312 | PRK05033, truB, tRNA pseudouridine synthase B; Pro | 2e-31 | |
| pfam08068 | 59 | pfam08068, DKCLD, DKCLD (NUC011) domain | 1e-30 | |
| PRK02484 | 294 | PRK02484, truB, tRNA pseudouridine synthase B; Pro | 6e-30 | |
| PRK03287 | 298 | PRK03287, truB, tRNA pseudouridine synthase B; Pro | 9e-30 | |
| PRK00130 | 290 | PRK00130, truB, tRNA pseudouridine synthase B; Pro | 3e-29 | |
| PRK05389 | 305 | PRK05389, truB, tRNA pseudouridine synthase B; Pro | 2e-28 | |
| PRK02755 | 295 | PRK02755, truB, tRNA pseudouridine synthase B; Pro | 2e-26 | |
| PRK01851 | 303 | PRK01851, truB, tRNA pseudouridine synthase B; Pro | 4e-26 | |
| PRK00989 | 230 | PRK00989, truB, tRNA pseudouridine synthase B; Pro | 3e-24 | |
| PRK14124 | 308 | PRK14124, PRK14124, tRNA pseudouridine synthase B; | 1e-21 | |
| PRK04642 | 300 | PRK04642, truB, tRNA pseudouridine synthase B; Pro | 3e-21 | |
| pfam01472 | 74 | pfam01472, PUA, PUA domain | 6e-19 | |
| PRK14123 | 305 | PRK14123, PRK14123, tRNA pseudouridine synthase B; | 3e-18 | |
| PRK00020 | 244 | PRK00020, truB, tRNA pseudouridine synthase B; Pro | 6e-18 | |
| PRK01528 | 292 | PRK01528, truB, tRNA pseudouridine synthase B; Pro | 2e-16 | |
| PRK14846 | 345 | PRK14846, truB, tRNA pseudouridine synthase B; Pro | 1e-15 | |
| smart00359 | 76 | smart00359, PUA, Putative RNA-binding Domain in Ps | 8e-15 | |
| PRK14122 | 312 | PRK14122, PRK14122, tRNA pseudouridine synthase B; | 6e-13 | |
| PRK04099 | 273 | PRK04099, truB, tRNA pseudouridine synthase B; Pro | 9e-13 | |
| PRK02193 | 279 | PRK02193, truB, tRNA pseudouridine synthase B; Pro | 1e-11 | |
| PRK13795 | 636 | PRK13795, PRK13795, hypothetical protein; Provisio | 3e-08 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 7e-08 | |
| cd02867 | 312 | cd02867, PseudoU_synth_TruB_4, Pseudouridine synth | 3e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-06 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 2e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-06 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 6e-06 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 9e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-05 | |
| PRK13794 | 479 | PRK13794, PRK13794, hypothetical protein; Provisio | 1e-05 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 2e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-05 | |
| pfam04615 | 728 | pfam04615, Utp14, Utp14 protein | 3e-05 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 4e-05 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 5e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-05 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 7e-05 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 8e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-04 | |
| PTZ00372 | 413 | PTZ00372, PTZ00372, endonuclease 4-like protein; P | 2e-04 | |
| pfam08432 | 182 | pfam08432, DUF1742, Fungal protein of unknown func | 2e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| pfam08208 | 193 | pfam08208, RNA_polI_A34, DNA-directed RNA polymera | 3e-04 | |
| pfam08208 | 193 | pfam08208, RNA_polI_A34, DNA-directed RNA polymera | 3e-04 | |
| PTZ00372 | 413 | PTZ00372, PTZ00372, endonuclease 4-like protein; P | 4e-04 | |
| pfam09507 | 427 | pfam09507, CDC27, DNA polymerase subunit Cdc27 | 4e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-04 | |
| COG2016 | 161 | COG2016, COG2016, Predicted RNA-binding protein (c | 5e-04 | |
| COG5163 | 591 | COG5163, NOP7, Protein required for biogenesis of | 5e-04 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 6e-04 | |
| pfam04615 | 728 | pfam04615, Utp14, Utp14 protein | 6e-04 | |
| pfam09507 | 427 | pfam09507, CDC27, DNA polymerase subunit Cdc27 | 6e-04 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 9e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| pfam04615 | 728 | pfam04615, Utp14, Utp14 protein | 0.001 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.001 | |
| PLN02967 | 581 | PLN02967, PLN02967, kinase | 0.001 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 0.002 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 0.002 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 0.002 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 0.002 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 0.002 | |
| pfam03839 | 217 | pfam03839, Sec62, Translocation protein Sec62 | 0.002 | |
| pfam07767 | 387 | pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | 0.002 | |
| pfam00183 | 529 | pfam00183, HSP90, Hsp90 protein | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.003 | |
| pfam08432 | 182 | pfam08432, DUF1742, Fungal protein of unknown func | 0.003 | |
| pfam09507 | 427 | pfam09507, CDC27, DNA polymerase subunit Cdc27 | 0.003 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.003 | |
| pfam02029 | 431 | pfam02029, Caldesmon, Caldesmon | 0.003 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 0.004 |
| >gnl|CDD|232971 TIGR00425, CBF5, rRNA pseudouridine synthase, putative | Back alignment and domain information |
|---|
Score = 513 bits (1323), Expect = 0.0
Identities = 197/326 (60%), Positives = 245/326 (75%), Gaps = 4/326 (1%)
Query: 69 LKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRV 128
LKN++ L V+ HYT + G +PLKR + +YI YG++NLDKP+ PSSHEVVAW++RIL V
Sbjct: 1 LKNFENLIVKEEHYTNIDYGCNPLKRDIEEYISYGVVNLDKPSGPSSHEVVAWVRRILNV 60
Query: 129 EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEA 188
EKTGH GTLDPKVTG L VCI+RATRLVKSQQ A KEYVC+ RLH + + R L+
Sbjct: 61 EKTGHGGTLDPKVTGVLPVCIERATRLVKSQQEAPKEYVCLMRLHRDAKE-EDILRVLKE 119
Query: 189 LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
TG +FQRPPL SAVKRQLR+RTIYES+LLE D V+F +SCEAGTY+R +CV +G
Sbjct: 120 FTGRIFQRPPLKSAVKRQLRVRTIYESELLEKDGKD--VLFRVSCEAGTYIRKLCVDIGE 177
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
LG G HMQELRR RSG GE D+MVT+HD++DA + DE+YLRR+I P+E LL
Sbjct: 178 ALGTGAHMQELRRTRSGCFGE-DDMVTLHDLLDAYVFWKEDGDESYLRRIIKPMEYLLRH 236
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVM 368
KR+VVKD+ V+AIC+GA LM+ G+ R E IE G+ VV++T KGEAVA+GIA M+T +
Sbjct: 237 LKRVVVKDSAVDAICHGADLMVRGIARLEKGIEKGDTVVVITLKGEAVAVGIALMSTKDI 296
Query: 369 ATCDHGVVARIKRVVMDRDTYPRKWG 394
A D GVVA +KRV+M+R TYPR W
Sbjct: 297 ANADKGVVADVKRVIMERGTYPRMWK 322
|
This family, found in archaea and eukaryotes, includes the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether archaeal proteins found by this model modify tRNA, rRNA, or both [Protein synthesis, tRNA and rRNA base modification]. Length = 322 |
| >gnl|CDD|211338 cd02572, PseudoU_synth_hDyskerin, Pseudouridine synthase, human dyskerin like | Back alignment and domain information |
|---|
| >gnl|CDD|179806 PRK04270, PRK04270, H/ACA RNA-protein complex component Cbf5p; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223208 COG0130, TruB, Pseudouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|211323 cd00506, PseudoU_synth_TruB_like, Pseudouridine synthase, TruB family | Back alignment and domain information |
|---|
| >gnl|CDD|211339 cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like | Back alignment and domain information |
|---|
| >gnl|CDD|216540 pfam01509, TruB_N, TruB family pseudouridylate synthase (N terminal domain) | Back alignment and domain information |
|---|
| >gnl|CDD|129523 TIGR00431, TruB, tRNA pseudouridine(55) synthase | Back alignment and domain information |
|---|
| >gnl|CDD|234959 PRK01550, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235333 PRK05033, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|203846 pfam08068, DKCLD, DKCLD (NUC011) domain | Back alignment and domain information |
|---|
| >gnl|CDD|235042 PRK02484, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235113 PRK03287, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|178886 PRK00130, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235442 PRK05389, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179469 PRK02755, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234986 PRK01851, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179199 PRK00989, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|172614 PRK14124, PRK14124, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179870 PRK04642, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|201816 pfam01472, PUA, PUA domain | Back alignment and domain information |
|---|
| >gnl|CDD|184522 PRK14123, PRK14123, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|134035 PRK00020, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179300 PRK01528, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237834 PRK14846, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214635 smart00359, PUA, Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase | Back alignment and domain information |
|---|
| >gnl|CDD|184521 PRK14122, PRK14122, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179739 PRK04099, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179381 PRK02193, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237510 PRK13795, PRK13795, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|211344 cd02867, PseudoU_synth_TruB_4, Pseudouridine synthase homolog 4 | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237509 PRK13794, PRK13794, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218177 pfam04615, Utp14, Utp14 protein | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742) | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34 | Back alignment and domain information |
|---|
| >gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34 | Back alignment and domain information |
|---|
| >gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27 | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224927 COG2016, COG2016, Predicted RNA-binding protein (contains PUA domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218177 pfam04615, Utp14, Utp14 protein | Back alignment and domain information |
|---|
| >gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27 | Back alignment and domain information |
|---|
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218177 pfam04615, Utp14, Utp14 protein | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|215521 PLN02967, PLN02967, kinase | Back alignment and domain information |
|---|
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62 | Back alignment and domain information |
|---|
| >gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | Back alignment and domain information |
|---|
| >gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742) | Back alignment and domain information |
|---|
| >gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27 | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon | Back alignment and domain information |
|---|
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 602 | |||
| TIGR00425 | 322 | CBF5 rRNA pseudouridine synthase, putative. This f | 100.0 | |
| KOG2529 | 395 | consensus Pseudouridine synthase [Translation, rib | 100.0 | |
| PRK04270 | 300 | H/ACA RNA-protein complex component Cbf5p; Reviewe | 100.0 | |
| COG0130 | 271 | TruB Pseudouridine synthase [Translation, ribosoma | 100.0 | |
| PRK14124 | 308 | tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK05033 | 312 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK04642 | 300 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK01550 | 304 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK00130 | 290 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK01851 | 303 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK02755 | 295 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK05389 | 305 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK01528 | 292 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK14123 | 305 | tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK03287 | 298 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK02484 | 294 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| cd02573 | 277 | PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudou | 100.0 | |
| PRK14122 | 312 | tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK04099 | 273 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK14846 | 345 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK02193 | 279 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| cd02572 | 182 | PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Li | 100.0 | |
| PRK00020 | 244 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| TIGR00431 | 209 | TruB tRNA pseudouridine 55 synthase. TruB, the tRN | 100.0 | |
| cd00506 | 210 | PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudo | 100.0 | |
| PRK00989 | 230 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| cd02867 | 312 | PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudou | 100.0 | |
| cd02868 | 226 | PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Li | 100.0 | |
| PF01509 | 149 | TruB_N: TruB family pseudouridylate synthase (N te | 100.0 | |
| PF08068 | 59 | DKCLD: DKCLD (NUC011) domain; InterPro: IPR012960 | 99.9 | |
| KOG2559 | 318 | consensus Predicted pseudouridine synthase [Transl | 99.75 | |
| TIGR01213 | 388 | conserved hypothetical protein TIGR01213. Members | 99.62 | |
| PRK14554 | 422 | putative pseudouridylate synthase; Provisional | 99.5 | |
| PF01472 | 74 | PUA: PUA domain; InterPro: IPR002478 The PUA (Pseu | 99.2 | |
| cd01291 | 87 | PseudoU_synth PseudoU_synth: Pseudouridine synthas | 99.2 | |
| TIGR00451 | 107 | unchar_dom_2 uncharacterized domain 2. This unchar | 99.07 | |
| TIGR03684 | 150 | arCOG00985 arCOG04150 universal archaeal PUA-domai | 98.88 | |
| COG2016 | 161 | Predicted RNA-binding protein (contains PUA domain | 98.85 | |
| COG1258 | 398 | Predicted pseudouridylate synthase [Translation, r | 98.8 | |
| PRK14560 | 160 | putative RNA-binding protein; Provisional | 98.79 | |
| PRK13794 | 479 | hypothetical protein; Provisional | 98.55 | |
| smart00359 | 77 | PUA Putative RNA-binding Domain in PseudoUridine s | 98.43 | |
| PRK13795 | 636 | hypothetical protein; Provisional | 98.37 | |
| PRK13534 | 639 | 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr | 98.26 | |
| cd02566 | 168 | PseudoU_synth_RluE PseudoU_synth_RluE: Pseudouridi | 98.09 | |
| cd02553 | 167 | PseudoU_synth_RsuA PseudoU_synth_RsuA: Pseudouridi | 98.08 | |
| cd02556 | 167 | PseudoU_synth_RluB PseudoU_synth_RluB: Pseudouridi | 97.96 | |
| PRK10475 | 290 | 23S rRNA pseudouridine synthase F; Provisional | 97.92 | |
| PRK10700 | 289 | 23S rRNA pseudouridylate synthase B; Provisional | 97.79 | |
| cd02555 | 177 | PSSA_1 PSSA_1: Pseudouridine synthase, a subgroup | 97.77 | |
| cd02554 | 164 | PseudoU_synth_RluF PseudoU_synth_RluF_like: Pseudo | 97.71 | |
| PRK05429 | 372 | gamma-glutamyl kinase; Provisional | 97.69 | |
| PF09157 | 58 | TruB-C_2: Pseudouridine synthase II TruB, C-termin | 97.66 | |
| PRK11394 | 217 | 23S rRNA pseudouridine synthase E; Provisional | 97.54 | |
| COG1370 | 155 | Prefoldin, molecular chaperone implicated in de no | 97.38 | |
| TIGR00432 | 540 | arcsn_tRNA_tgt tRNA-guanine transglycosylase, arch | 97.33 | |
| KOG2523 | 181 | consensus Predicted RNA-binding protein with PUA d | 97.31 | |
| PRK10839 | 232 | 16S rRNA pseudouridylate synthase A; Provisional | 97.3 | |
| TIGR01621 | 217 | RluA-like pseudouridine synthase Rlu family protei | 97.23 | |
| cd02557 | 213 | PseudoU_synth_ScRIB2 PseudoU_synth_ScRIB2_like: Ps | 97.19 | |
| PRK10158 | 219 | 23S rRNA/tRNA pseudouridine synthase A; Provisiona | 97.1 | |
| COG5270 | 202 | PUA domain (predicted RNA-binding domain) [Transla | 97.01 | |
| cd02870 | 146 | PseudoU_synth_RsuA_like Pseudouridine synthases ar | 96.98 | |
| cd02558 | 246 | PSRA_1 PSRA_1: Pseudouridine synthase, a subgroup | 96.96 | |
| cd02867 | 312 | PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudou | 96.95 | |
| cd02563 | 223 | PseudoU_synth_TruC tRNA pseudouridine isomerase C: | 96.91 | |
| KOG1919 | 371 | consensus RNA pseudouridylate synthases [RNA proce | 96.74 | |
| COG1187 | 248 | RsuA 16S rRNA uridine-516 pseudouridylate synthase | 96.68 | |
| COG0564 | 289 | RluA Pseudouridylate synthases, 23S RNA-specific [ | 96.58 | |
| cd02550 | 154 | PseudoU_synth_Rsu_Rlu_like PseudoU_synth_Rsu_Rlu: | 96.58 | |
| PRK11112 | 257 | tRNA pseudouridine synthase C; Provisional | 96.41 | |
| TIGR00005 | 299 | rluA_subfam pseudouridine synthase, RluA family. m | 96.37 | |
| TIGR01027 | 363 | proB glutamate 5-kinase. Bacterial ProB proteins h | 96.37 | |
| PRK11180 | 325 | rluD 23S rRNA pseudouridine synthase D; Provisiona | 96.31 | |
| cd02869 | 185 | PseudoU_synth_RluCD_like PseudoU_synth_RsuA/RluD: | 96.21 | |
| PF00849 | 164 | PseudoU_synth_2: RNA pseudouridylate synthase This | 96.07 | |
| COG1549 | 519 | Queuine tRNA-ribosyltransferases, contain PUA doma | 96.05 | |
| PRK11025 | 317 | 23S rRNA pseudouridylate synthase C; Provisional | 96.0 | |
| PF09142 | 56 | TruB_C: tRNA Pseudouridine synthase II, C terminal | 95.98 | |
| TIGR00093 | 128 | pseudouridine synthase. This model identifies pane | 95.04 | |
| PRK13402 | 368 | gamma-glutamyl kinase; Provisional | 93.8 | |
| KOG2529 | 395 | consensus Pseudouridine synthase [Translation, rib | 87.65 | |
| KOG3492 | 180 | consensus Ribosome biogenesis protein NIP7 [Transl | 85.07 | |
| COG0263 | 369 | ProB Glutamate 5-kinase [Amino acid transport and | 83.21 | |
| PF13636 | 102 | Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome | 82.95 | |
| PF03657 | 162 | UPF0113: Uncharacterised protein family (UPF0113); | 82.85 | |
| KOG2522 | 560 | consensus Filamentous baseplate protein Ligatin, c | 82.29 |
| >TIGR00425 CBF5 rRNA pseudouridine synthase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-88 Score=702.43 Aligned_cols=322 Identities=60% Similarity=0.987 Sum_probs=304.7
Q ss_pred cccccceeeeccCcCCCCCCCCCCCCCccccccceEEEeeCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCccceEEE
Q 007467 69 LKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVC 148 (602)
Q Consensus 69 lkn~~~l~vr~~~~t~~~~g~~p~~R~i~~~i~nGIInlDKP~G~TSheVVa~VKriL~~kKvGHsGTLDP~ATGVL~V~ 148 (602)
|+||..|.+....+|+..+||+|.+|+|++++.+||||||||.|||||+||+||||+|+.+|+||+|||||+||||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~i~KP~g~tS~~~v~~vr~~~~~kkvGH~GTLDP~A~GvL~v~ 80 (322)
T TIGR00425 1 LKNFENLIVKEEAYTNIDYGCNPLKRDIEEYISYGVVNLDKPSGPSSHEVVAWVRRILNVEKTGHGGTLDPKVTGVLPVC 80 (322)
T ss_pred CCcchheeEeccccCCcccCCCccCCCHHHhcCCCEEEEeCCCCCCHHHHHHHHHHHhcccccCCCCCCCCCCceEEEEE
Confidence 78999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccccCCCcEEEEEEEEcCcCCCHHHHHHHHHhccccccccCcchhhcccCCeEEEEEEEEEEEEecCCceEE
Q 007467 149 IDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228 (602)
Q Consensus 149 IG~ATKLv~~l~~~~KeYva~i~LG~~t~s~e~L~~aL~~F~G~I~Q~PP~ySAVKr~lR~rtIY~ieLLe~d~e~~~~~ 228 (602)
+|+||||++|+++.+|+|+|+++||... +.++|.++|..|+|.|+|+||+|||+|++.|.++||++++++|+. +.+.
T Consensus 81 ~G~aTkl~~~~~~~~K~Y~~~v~lG~~~-~~~~l~~~l~~f~g~i~Q~pP~~SA~k~~~r~v~I~~~~l~~~~~--~~~~ 157 (322)
T TIGR00425 81 IERATRLVKSLQEAPKEYVCLMRLHRDA-KEEDILRVLKEFTGRIFQRPPLKSAVKRQLRVRTIYESELLEKDG--KDVL 157 (322)
T ss_pred EChHhhccHHhccCCCEEEEEEEECCCC-CHHHHHHHHHHcCCcEEeeCChheEEeccCeEEEEEEEEEEEecC--CeEE
Confidence 9999999999999999999999999875 689999999999999999999999999999999999999999986 5699
Q ss_pred EEEEeecCchhHHHHHHHHHHhCCceEeceeeEEEEeCccccCcccChHHHHHHHhHhhcccchHHHhhhccchHHHHhh
Q 007467 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308 (602)
Q Consensus 229 f~V~Cs~GTYIRSL~~DIG~~LG~gAhM~eLRRtrsG~Fseed~lvTL~dL~Da~~~~~~~~des~Lr~~I~PlE~~L~~ 308 (602)
|+|+||+||||||||+|||..|||+|||++||||++|+|++++ ++||++|.++.|+|.+..++..++..|+|++.+|.+
T Consensus 158 ~~v~cskGTYIRsL~~Dig~~Lg~~a~~~~L~R~~~g~f~~~~-a~~l~~l~~~~~~~~~~~~~~~l~~~l~p~~~~l~~ 236 (322)
T TIGR00425 158 FRVSCEAGTYIRKLCVDIGEALGTGAHMQELRRTRSGCFGEDD-MVTLHDLLDAYVFWKEDGDESYLRRVIKPMEYALRH 236 (322)
T ss_pred EEEEeCCCcChHHHHHHHHHHHCCCEEEEEeEeEEECCccccc-cccHHHHHHhhhhhhcccchhhHhhhcCCHHHHHhh
Confidence 9999999999999999999999999999999999999999975 689999998877776655555678899999999999
Q ss_pred hceeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEecccccccCCCCeEEeeeEeeecCCC
Q 007467 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDT 388 (602)
Q Consensus 309 lPrIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~mss~~i~~~d~GiVak~kRViM~~dt 388 (602)
||++.+++.++.+|+||+.|+.||+...+..+..++.|++++.+|+++|||.+.|++.+|..+.+|+++++.++||++|+
T Consensus 237 lP~V~Vd~~~a~~I~NG~~I~~pgv~~~d~~i~~gd~V~V~~~~G~~LAIGea~~s~~ei~~~~kG~vV~~~~~~~~~~~ 316 (322)
T TIGR00425 237 LKRVVVKDSAVDAICHGADLMVRGIARLEKGIEKGDTVAVITLKGEAVAVGIALMSTKDIANADKGVVADVKRVIMERGT 316 (322)
T ss_pred CCceEeCHHHHHHHHCCCccccccccccccccCCCCEEEEEECCCEEEEEEEEecCHHHHhhcCCcEEEEEEEEeeCCCC
Confidence 99999999999999999999999987766556677888888888999999999999999999999999999999999999
Q ss_pred CCCCcC
Q 007467 389 YPRKWG 394 (602)
Q Consensus 389 YP~~Wg 394 (602)
||++|+
T Consensus 317 ~~~~~~ 322 (322)
T TIGR00425 317 YPRMWK 322 (322)
T ss_pred CCCCcC
Confidence 999995
|
This family, found in archaea and eukaryotes, includes the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether archaeal proteins found by this model modify tRNA, rRNA, or both. |
| >KOG2529 consensus Pseudouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed | Back alignment and domain information |
|---|
| >COG0130 TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK14124 tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >PRK05033 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >PRK04642 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >PRK01550 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >PRK00130 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >PRK01851 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >PRK02755 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >PRK05389 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >PRK01528 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >PRK14123 tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >PRK03287 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >PRK02484 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >cd02573 PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like | Back alignment and domain information |
|---|
| >PRK14122 tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >PRK04099 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >PRK14846 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >PRK02193 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >cd02572 PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Like: Pseudouridine synthase, human dyskerin like | Back alignment and domain information |
|---|
| >PRK00020 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >TIGR00431 TruB tRNA pseudouridine 55 synthase | Back alignment and domain information |
|---|
| >cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family | Back alignment and domain information |
|---|
| >PRK00989 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
| >cd02867 PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudouridine synthase homolog 4 | Back alignment and domain information |
|---|
| >cd02868 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like | Back alignment and domain information |
|---|
| >PF01509 TruB_N: TruB family pseudouridylate synthase (N terminal domain); InterPro: IPR002501 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones | Back alignment and domain information |
|---|
| >PF08068 DKCLD: DKCLD (NUC011) domain; InterPro: IPR012960 This is an N-terminal domain of dyskerin-like proteins, which is often associated with the TruB N-terminal(IPR002501 from INTERPRO) and PUA(IPR002478 from INTERPRO) domains [] | Back alignment and domain information |
|---|
| >KOG2559 consensus Predicted pseudouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR01213 conserved hypothetical protein TIGR01213 | Back alignment and domain information |
|---|
| >PRK14554 putative pseudouridylate synthase; Provisional | Back alignment and domain information |
|---|
| >PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found [] | Back alignment and domain information |
|---|
| >cd01291 PseudoU_synth PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi) | Back alignment and domain information |
|---|
| >TIGR00451 unchar_dom_2 uncharacterized domain 2 | Back alignment and domain information |
|---|
| >TIGR03684 arCOG00985 arCOG04150 universal archaeal PUA-domain protein | Back alignment and domain information |
|---|
| >COG2016 Predicted RNA-binding protein (contains PUA domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG1258 Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK14560 putative RNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK13794 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase | Back alignment and domain information |
|---|
| >PRK13795 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional | Back alignment and domain information |
|---|
| >cd02566 PseudoU_synth_RluE PseudoU_synth_RluE: Pseudouridine synthase, Escherichia coli RluE | Back alignment and domain information |
|---|
| >cd02553 PseudoU_synth_RsuA PseudoU_synth_RsuA: Pseudouridine synthase, Escherichia coli RsuA like | Back alignment and domain information |
|---|
| >cd02556 PseudoU_synth_RluB PseudoU_synth_RluB: Pseudouridine synthase, Escherichia coli RluB like | Back alignment and domain information |
|---|
| >PRK10475 23S rRNA pseudouridine synthase F; Provisional | Back alignment and domain information |
|---|
| >PRK10700 23S rRNA pseudouridylate synthase B; Provisional | Back alignment and domain information |
|---|
| >cd02555 PSSA_1 PSSA_1: Pseudouridine synthase, a subgroup of the RsuA family | Back alignment and domain information |
|---|
| >cd02554 PseudoU_synth_RluF PseudoU_synth_RluF_like: Pseudouridine synthase, Escherichia coli RluF like | Back alignment and domain information |
|---|
| >PRK05429 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
| >PF09157 TruB-C_2: Pseudouridine synthase II TruB, C-terminal; InterPro: IPR015240 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones | Back alignment and domain information |
|---|
| >PRK11394 23S rRNA pseudouridine synthase E; Provisional | Back alignment and domain information |
|---|
| >COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming | Back alignment and domain information |
|---|
| >KOG2523 consensus Predicted RNA-binding protein with PUA domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK10839 16S rRNA pseudouridylate synthase A; Provisional | Back alignment and domain information |
|---|
| >TIGR01621 RluA-like pseudouridine synthase Rlu family protein, TIGR01621 | Back alignment and domain information |
|---|
| >cd02557 PseudoU_synth_ScRIB2 PseudoU_synth_ScRIB2_like: Pseudouridine synthase, Saccharomyces cerevisiae RIB2_like | Back alignment and domain information |
|---|
| >PRK10158 23S rRNA/tRNA pseudouridine synthase A; Provisional | Back alignment and domain information |
|---|
| >COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd02870 PseudoU_synth_RsuA_like Pseudouridine synthases are responsible for the synthesis of pseudouridine from uracil in ribosomal RNA | Back alignment and domain information |
|---|
| >cd02558 PSRA_1 PSRA_1: Pseudouridine synthase, a subgroup of the RluA family | Back alignment and domain information |
|---|
| >cd02867 PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudouridine synthase homolog 4 | Back alignment and domain information |
|---|
| >cd02563 PseudoU_synth_TruC tRNA pseudouridine isomerase C: Pseudouridine synthases catalyze the isomerization of specific uridines in an tRNA molecule to pseudouridines (5-ribosyluracil, psi) | Back alignment and domain information |
|---|
| >KOG1919 consensus RNA pseudouridylate synthases [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd02550 PseudoU_synth_Rsu_Rlu_like PseudoU_synth_Rsu_Rlu: Pseudouridine synthase, Rsu/Rlu family | Back alignment and domain information |
|---|
| >PRK11112 tRNA pseudouridine synthase C; Provisional | Back alignment and domain information |
|---|
| >TIGR00005 rluA_subfam pseudouridine synthase, RluA family | Back alignment and domain information |
|---|
| >TIGR01027 proB glutamate 5-kinase | Back alignment and domain information |
|---|
| >PRK11180 rluD 23S rRNA pseudouridine synthase D; Provisional | Back alignment and domain information |
|---|
| >cd02869 PseudoU_synth_RluCD_like PseudoU_synth_RsuA/RluD: Pseudouridine synthase, RsuA/RluD family | Back alignment and domain information |
|---|
| >PF00849 PseudoU_synth_2: RNA pseudouridylate synthase This Prosite family is a subset of the Pfam family | Back alignment and domain information |
|---|
| >COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK11025 23S rRNA pseudouridylate synthase C; Provisional | Back alignment and domain information |
|---|
| >PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones | Back alignment and domain information |
|---|
| >TIGR00093 pseudouridine synthase | Back alignment and domain information |
|---|
| >PRK13402 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
| >KOG2529 consensus Pseudouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG3492 consensus Ribosome biogenesis protein NIP7 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF13636 Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome biogenesis; PDB: 3M4X_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A | Back alignment and domain information |
|---|
| >PF03657 UPF0113: Uncharacterised protein family (UPF0113); InterPro: IPR005155 This entry represents PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain containing proteins such as the ribosomal biogenesis factor NIP7 [, ] | Back alignment and domain information |
|---|
| >KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 602 | ||||
| 3u28_A | 400 | Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From | 1e-163 | ||
| 2aus_C | 334 | Crystal Structure Of The Archaeal Box HACA SRNP NOP | 2e-70 | ||
| 2apo_A | 357 | Crystal Structure Of The Methanococcus Jannaschii C | 1e-69 | ||
| 3mqk_A | 328 | Cbf5-Nop10-Gar1 Complex Binding With 17mer Rna Cont | 2e-69 | ||
| 3hjw_A | 327 | Structure Of A Functional Ribonucleoprotein Pseudou | 2e-69 | ||
| 3lwo_A | 340 | Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONT | 3e-69 | ||
| 2hvy_A | 346 | Crystal Structure Of An HACA BOX RNP FROM PYROCOCCU | 3e-69 | ||
| 2rfk_A | 334 | Substrate Rna Positioning In The Archaeal HACA Ribo | 2e-68 | ||
| 2ey4_A | 333 | Crystal Structure Of A Cbf5-Nop10-Gar1 Complex Leng | 3e-68 | ||
| 3zv0_C | 195 | Structure Of The Shq1p-Cbf5p Complex Length = 195 | 3e-47 | ||
| 1sgv_A | 316 | Structure Of Trna Psi55 Pseudouridine Synthase (Tru | 8e-15 | ||
| 1r3e_A | 309 | Crystal Structure Of Trna Pseudouridine Synthase Tr | 3e-14 | ||
| 1ze1_A | 309 | Conformational Change Of Pseudouridine 55 Synthase | 3e-14 | ||
| 1ze2_A | 309 | Conformational Change Of Pseudouridine 55 Synthase | 3e-14 | ||
| 2ab4_A | 309 | Dissecting The Roles Of A Strictly Conserved Tyrosi | 7e-14 | ||
| 1k8w_A | 327 | Crystal Structure Of The E. Coli Pseudouridine Synt | 6e-13 | ||
| 1r3f_A | 314 | Crystal Structure Of Trna Pseudouridine Synthase Tr | 8e-13 | ||
| 1zl3_A | 327 | Coupling Of Active Site Motions And Rna Binding Len | 2e-12 |
| >pdb|3U28|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From Saccharomyces Cerevisiae Length = 400 | Back alignment and structure |
|
| >pdb|2AUS|C Chain C, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5 Complex Length = 334 | Back alignment and structure |
| >pdb|2APO|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Cbf5 Nop10 Complex Length = 357 | Back alignment and structure |
| >pdb|3MQK|A Chain A, Cbf5-Nop10-Gar1 Complex Binding With 17mer Rna Containing Aca Trinucleotide Length = 328 | Back alignment and structure |
| >pdb|3HJW|A Chain A, Structure Of A Functional Ribonucleoprotein Pseudouridine Synthase Bound To A Substrate Rna Length = 327 | Back alignment and structure |
| >pdb|3LWO|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING 5BRU Length = 340 | Back alignment and structure |
| >pdb|2HVY|A Chain A, Crystal Structure Of An HACA BOX RNP FROM PYROCOCCUS FURIOSUS Length = 346 | Back alignment and structure |
| >pdb|2RFK|A Chain A, Substrate Rna Positioning In The Archaeal HACA Ribonucleoprotein Complex Length = 334 | Back alignment and structure |
| >pdb|2EY4|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex Length = 333 | Back alignment and structure |
| >pdb|3ZV0|C Chain C, Structure Of The Shq1p-Cbf5p Complex Length = 195 | Back alignment and structure |
| >pdb|1SGV|A Chain A, Structure Of Trna Psi55 Pseudouridine Synthase (Trub) Length = 316 | Back alignment and structure |
| >pdb|1R3E|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And Its Rna Complex: Rna-Protein Recognition Through A Combination Of Rigid Docking And Induced Fit Length = 309 | Back alignment and structure |
| >pdb|1ZE1|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon Its Association With Rna Substrate Length = 309 | Back alignment and structure |
| >pdb|1ZE2|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon Its Association With Rna Substrate Length = 309 | Back alignment and structure |
| >pdb|2AB4|A Chain A, Dissecting The Roles Of A Strictly Conserved Tyrosine In Substrate Recognition And Catalysis By Pseudouridine 55 Synthase Length = 309 | Back alignment and structure |
| >pdb|1K8W|A Chain A, Crystal Structure Of The E. Coli Pseudouridine Synthase Trub Bound To A T Stem-Loop Rna Length = 327 | Back alignment and structure |
| >pdb|1R3F|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And Its Rna Complex: Rna-Protein Recognition Through A Combination Of Rigid Docking And Induced Fit Length = 314 | Back alignment and structure |
| >pdb|1ZL3|A Chain A, Coupling Of Active Site Motions And Rna Binding Length = 327 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A Length = 400 | Back alignment and structure |
|---|
Score = 573 bits (1479), Expect = 0.0
Identities = 275/384 (71%), Positives = 331/384 (86%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF+IKP++ S DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI G+IN
Sbjct: 4 EDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIYES L+E+D R+L
Sbjct: 124 VCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR +I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E+
Sbjct: 244 DNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEI 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+ IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 304 VLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMK 363
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP++W + V
Sbjct: 364 ADGKLDKYGRVNENTPEQWKKEYV 387
|
| >2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2 Length = 357 | Back alignment and structure |
|---|
| >2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A Length = 334 | Back alignment and structure |
|---|
| >1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A Length = 309 | Back alignment and structure |
|---|
| >1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A Length = 327 | Back alignment and structure |
|---|
| >3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae} Length = 195 | Back alignment and structure |
|---|
| >3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae} Length = 195 | Back alignment and structure |
|---|
| >1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2 Length = 316 | Back alignment and structure |
|---|
| >3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii} Length = 179 | Back alignment and structure |
|---|
| >2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens} Length = 530 | Back alignment and structure |
|---|
| >1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2 Length = 153 | Back alignment and structure |
|---|
| >3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens} Length = 188 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478 | Back alignment and structure |
|---|
| >1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A Length = 187 | Back alignment and structure |
|---|
| >2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5 Length = 306 | Back alignment and structure |
|---|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 602 | |||
| 3u28_A | 400 | H/ACA ribonucleoprotein complex subunit 4; pseudou | 100.0 | |
| 2apo_A | 357 | Probable tRNA pseudouridine synthase B; protein-pr | 100.0 | |
| 2aus_C | 334 | Pseudouridine synthase; isomerase, structural prot | 100.0 | |
| 1r3e_A | 309 | TRNA pseudouridine synthase B; RNA modification, p | 100.0 | |
| 1k8w_A | 327 | TRNA pseudouridine synthase B; protein-RNA complex | 100.0 | |
| 1sgv_A | 316 | TRNA pseudouridine synthase B; hinged motion, tRNA | 100.0 | |
| 3zv0_C | 195 | H/ACA ribonucleoprotein complex subunit 4; cell cy | 100.0 | |
| 2v9k_A | 530 | Uncharacterized protein FLJ32312; pseudouridine sy | 99.66 | |
| 3r90_A | 188 | Malignant T cell-amplified sequence 1; structural | 99.13 | |
| 1q7h_A | 153 | Conserved hypothetical protein; structural genomic | 98.74 | |
| 3d79_A | 179 | PUA domain, putative uncharacterized protein PH073 | 98.71 | |
| 2cx0_A | 187 | Hypothetical protein APE0525; PUA domain, structur | 98.54 | |
| 2q07_A | 306 | Uncharacterized protein AF0587; monomer, structura | 98.44 | |
| 1iq8_A | 582 | Archaeosine tRNA-guanine transglycosylase; (alpha/ | 98.4 | |
| 3dh3_A | 290 | Ribosomal large subunit pseudouridine synthase F; | 98.39 | |
| 2p38_A | 166 | Protein involved in ribosomal biogenesis; two alph | 97.58 | |
| 2gml_A | 237 | Ribosomal large subunit pseudouridine synthase F; | 97.45 | |
| 1v9k_A | 228 | Ribosomal large subunit pseudouridine synthase C; | 97.38 | |
| 1sqw_A | 188 | Saccharomyces cerevisiae NIP7P homolog; PUA, unkno | 97.09 | |
| 1vio_A | 243 | Ribosomal small subunit pseudouridine synthase A; | 96.67 | |
| 1ksk_A | 234 | Ribosomal small subunit pseudouridine synthase A; | 96.54 | |
| 2oml_A | 189 | Ribosomal large subunit pseudouridine synthase E; | 96.53 | |
| 2i82_A | 217 | Ribosomal large subunit pseudouridine synthase A; | 96.49 | |
| 2j5v_A | 367 | Glutamate 5-kinase; proline biosynthesis, gamma gl | 96.42 | |
| 1v9f_A | 325 | Ribosomal large subunit pseudouridine synthase D; | 96.29 | |
| 2olw_A | 217 | Ribosomal large subunit pseudouridine synthase E; | 96.2 |
| >3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-128 Score=1019.16 Aligned_cols=390 Identities=71% Similarity=1.188 Sum_probs=328.6
Q ss_pred cCCccccCCCCCCCCCCCCcchhcccccceeeeccCcCCCCCCCCCCCCCccccccceEEEeeCCCCCCHHHHHHHHHHH
Q 007467 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRI 125 (602)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~wplllkn~~~l~vr~~~~t~~~~g~~p~~R~i~~~i~nGIInlDKP~G~TSheVVa~VKri 125 (602)
.++|.|+|++.+|++|||+||||||||++|++|++||||+++||+|++|+|.+|+.+||||||||.|||||+||+||||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~~t~~~~g~~p~~r~~~~~~~~Gil~ldKP~G~TS~dvv~~vrr~ 82 (400)
T 3u28_A 3 KEDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRI 82 (400)
T ss_dssp --CCSCCCC------CCTTSCGGGTTGGGSEESCSCCCCCCCSCCGGGCCHHHHHHTEEEEEEECSSSCHHHHHHHHHHH
T ss_pred CCCceeCcccCCCCCCcccCchhhhchHheeeecccccCCccCCCcCcCCHHHhccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCCCCCccceEEEEeccccccccccCCCcEEEEEEEEcCcCCCHHHHHHHHHhccccccccCcchhhccc
Q 007467 126 LRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKR 205 (602)
Q Consensus 126 L~~kKvGHsGTLDP~ATGVL~V~IG~ATKLv~~l~~~~KeYva~i~LG~~t~s~e~L~~aL~~F~G~I~Q~PP~ySAVKr 205 (602)
|+.+|+||+|||||+||||||||||+|||+++||++++|+|+|+++||..+++.++|+++|..|+|.|+|+||+||||||
T Consensus 83 l~~kKvGH~GTLDP~AtGvL~v~iG~aTKl~~~l~~~~K~Y~a~~~lG~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAvK~ 162 (400)
T 3u28_A 83 LRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKR 162 (400)
T ss_dssp HTCSCEEESSCCCTTCEEEEEEEEGGGGGGHHHHHHSCEEEEEEEEESSCCSSTTHHHHHHHHTCEEEEECCC-----CC
T ss_pred hCcCcccccCCCCCCCeEEEEEEEChHHhHhHHhcCCCcEEEEEEEeCCCCCCHHHHHHHHHhCcCceEEECCceecccC
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred CCeEEEEEEEEEEEEecCCceEEEEEEeecCchhHHHHHHHHHHhCCceEeceeeEEEEeCccccCcccChHHHHHHHhH
Q 007467 206 QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285 (602)
Q Consensus 206 ~lR~rtIY~ieLLe~d~e~~~~~f~V~Cs~GTYIRSL~~DIG~~LG~gAhM~eLRRtrsG~Fseed~lvTL~dL~Da~~~ 285 (602)
++|.++||++++++|+.+.+.+.|+|+||+||||||||+|||..|||||||++||||++|+|+++++++|||||.+++|+
T Consensus 163 ~~R~v~I~~i~ll~~~~~~~~~~~~V~CskGTYIRsL~~DiG~~LG~gahm~~LrRt~~G~F~~~~a~vtL~~l~~~~~~ 242 (400)
T 3u28_A 163 QLRVRTIYESNLIEFDNKRNLGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWV 242 (400)
T ss_dssp CCEEEEEEEEEEEEEETTTTEEEEEEEECTTCCHHHHHHHHHHHHSSCEEEEEEEEEEETTEETTSSCBCHHHHHHHHHH
T ss_pred CceeEEEEEEEEEEEcCCCceEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEcCcchhhhcCCHHHHHHhhhh
Confidence 99999999999999997667899999999999999999999999999999999999999999999989999999999999
Q ss_pred hhcccchHHHhhhccchHHHHhhhceeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEecc
Q 007467 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTT 365 (602)
Q Consensus 286 ~~~~~des~Lr~~I~PlE~~L~~lPrIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~mss 365 (602)
|++..++++|+.+|+|+|.+|.+||+|+|+++++++|+||+.|+.||+++++.+|..|+.|++++.+|++||||+++|++
T Consensus 243 ~~~~~~~~~l~~~l~P~e~~l~~lp~V~L~deaa~~V~NGq~L~~pgVl~~~~~i~~gd~VvVvt~kGelLAIG~A~mss 322 (400)
T 3u28_A 243 YDNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMST 322 (400)
T ss_dssp HHHHCCCHHHHHHCEEGGGGGTTSCEEEECHHHHHHHHHHSEEEGGGEEEECTTCCTTCEEEEECTTCCEEEEEEESSCH
T ss_pred hhcccchhhHhhhcCCHHHHHhhCCccccCHHHHHHHHCcCccccCccccccccCCCCCEEEEEeCCCcEEEEEEEEeCH
Confidence 99888889999999999999999999999999999999999999999988888888899999999999999999999999
Q ss_pred cccccCCCCeEEeeeEeeecCCCCCCCcCCCccchhhhhhhhcCcccccCCCCCCCchhhhhcccCCCCC
Q 007467 366 AVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGG 435 (602)
Q Consensus 366 ~~i~~~d~GiVak~kRViM~~dtYP~~Wg~gp~a~~kk~~~~~g~l~k~g~~~~~tp~~w~~~~~~~~~~ 435 (602)
.+|.++++|+|++++||||++|||||+||+||+|++||+||++|+||||||||++||++|.++|+||+..
T Consensus 323 ~em~~~~~G~vvk~~rV~m~~~~yp~~w~~~~~~~~k~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (400)
T 3u28_A 323 VDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMKADGKLDKYGRVNENTPEQWKKEYVPLDNA 392 (400)
T ss_dssp HHHHHCSSSEEEEEEEECSCTTSSCCCC------------------------------------------
T ss_pred HHHhhcCCcEEEEEEEEeecCCCCccccCcChhHHHHHHHHHccCccccCCCCCCChHHHhhhcccccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999754
|
| >2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2 | Back alignment and structure |
|---|
| >2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A | Back alignment and structure |
|---|
| >1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A | Back alignment and structure |
|---|
| >1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A | Back alignment and structure |
|---|
| >1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2 | Back alignment and structure |
|---|
| >3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens} | Back alignment and structure |
|---|
| >3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2 | Back alignment and structure |
|---|
| >3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A | Back alignment and structure |
|---|
| >2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5 | Back alignment and structure |
|---|
| >1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A | Back alignment and structure |
|---|
| >3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
| >2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi} | Back alignment and structure |
|---|
| >2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
| >1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A | Back alignment and structure |
|---|
| >1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A | Back alignment and structure |
|---|
| >1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5 | Back alignment and structure |
|---|
| >1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A* | Back alignment and structure |
|---|
| >2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli} | Back alignment and structure |
|---|
| >2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
| >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A | Back alignment and structure |
|---|
| >1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A | Back alignment and structure |
|---|
| >2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 602 | ||||
| d2ey4a2 | 245 | d.265.1.2 (A:8-252) Pseudouridine synthase II TruB | 2e-70 | |
| d2apoa2 | 230 | d.265.1.2 (A:17-246) Pseudouridine synthase II Tru | 3e-69 | |
| d1k8wa5 | 242 | d.265.1.2 (A:9-250) Pseudouridine synthase II TruB | 1e-49 | |
| d1sgva2 | 233 | d.265.1.2 (A:3-235) Pseudouridine synthase II TruB | 2e-49 | |
| d1r3ea2 | 228 | d.265.1.2 (A:10-237) Pseudouridine synthase II Tru | 8e-44 | |
| d2apoa1 | 85 | b.122.1.1 (A:247-331) Pseudouridine synthase II Tr | 6e-26 | |
| d2ey4a1 | 84 | b.122.1.1 (A:253-336) Pseudouridine synthase II Tr | 5e-24 | |
| d1r3ea1 | 81 | b.122.1.1 (A:238-318) Pseudouridine synthase II Tr | 6e-18 | |
| d1q7ha1 | 85 | b.122.1.1 (A:69-153) Hypothetical protein Ta1423, | 1e-15 | |
| d1iq8a3 | 77 | b.122.1.1 (A:506-582) Archaeosine tRNA-guanine tra | 2e-13 | |
| d2q07a1 | 68 | b.122.1.1 (A:460-527) Uncharacterized protein AF05 | 2e-12 | |
| d2cx1a1 | 93 | b.122.1.1 (A:91-183) Hypothetical protein APE0525, | 2e-06 |
| >d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 225 bits (574), Expect = 2e-70
Identities = 106/219 (48%), Positives = 151/219 (68%), Gaps = 3/219 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ +I++G+INLDKP P+SHEVVAWIK+IL +EK GH GTLDPKV+G L V
Sbjct: 28 GFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPV 87
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++ATR+V++ AGKEYV + LH VP+ K+ + ++ G + QRPPL SAVKR+L
Sbjct: 88 ALEKATRVVQALLPAGKEYVALMHLHGDVPED-KIIQVMKEFEGEIIQRPPLRSAVKRRL 146
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE + L F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 147 RTRKVYYIEVLEIEGRDVL--FRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPF 204
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLL 306
E++ ++T+HD++D + + E Y R+ I P+E +
Sbjct: 205 KEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAV 243
|
| >d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
| >d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB {Escherichia coli [TaxId: 562]} Length = 242 | Back information, alignment and structure |
|---|
| >d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
| >d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB {Thermotoga maritima [TaxId: 2336]} Length = 228 | Back information, alignment and structure |
|---|
| >d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85 | Back information, alignment and structure |
|---|
| >d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 84 | Back information, alignment and structure |
|---|
| >d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 81 | Back information, alignment and structure |
|---|
| >d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423, C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 85 | Back information, alignment and structure |
|---|
| >d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine transglycosylase, C3 domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 77 | Back information, alignment and structure |
|---|
| >d2q07a1 b.122.1.1 (A:460-527) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 68 | Back information, alignment and structure |
|---|
| >d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525, C-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 93 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 602 | |||
| d2apoa2 | 230 | Pseudouridine synthase II TruB {Archaeon Methanoco | 100.0 | |
| d2ey4a2 | 245 | Pseudouridine synthase II TruB {Archaeon Pyrococcu | 100.0 | |
| d1k8wa5 | 242 | Pseudouridine synthase II TruB {Escherichia coli [ | 100.0 | |
| d1r3ea2 | 228 | Pseudouridine synthase II TruB {Thermotoga maritim | 100.0 | |
| d1sgva2 | 233 | Pseudouridine synthase II TruB {Mycobacterium tube | 100.0 | |
| d2apoa1 | 85 | Pseudouridine synthase II TruB, C-terminal domain | 99.78 | |
| d2ey4a1 | 84 | Pseudouridine synthase II TruB, C-terminal domain | 99.76 | |
| d1r3ea1 | 81 | Pseudouridine synthase II TruB, C-terminal domain | 99.62 | |
| d1iq8a3 | 77 | Archaeosine tRNA-guanine transglycosylase, C3 doma | 99.24 | |
| d1q7ha1 | 85 | Hypothetical protein Ta1423, C-terminal domain {Ar | 99.15 | |
| d2q07a1 | 68 | Uncharacterized protein AF0587 {Archaeoglobus fulg | 98.88 | |
| d2cx1a1 | 93 | Hypothetical protein APE0525, C-terminal domain {A | 98.75 | |
| d1vioa1 | 174 | Ribosomal small subunit pseudouridine 516 synthase | 98.05 | |
| d1k8wa3 | 62 | Pseudouridine synthase II TruB, C-terminal domain | 97.83 | |
| d1kska4 | 172 | Ribosomal small subunit pseudouridine 516 synthase | 97.73 | |
| d1v9fa_ | 250 | Ribosomal large subunit pseudouridine synthase D, | 96.88 | |
| d2as0a1 | 72 | Hypothetical protein PH1915, N-terminal domain {Ar | 96.83 | |
| d1v9ka_ | 227 | Ribosomal large subunit pseudouridine synthase C, | 96.73 | |
| d1sqwa1 | 76 | Nip7p homolog, C-terminal domain {Human (Homo sapi | 95.9 | |
| d1sgva1 | 57 | Pseudouridine synthase II TruB, C-terminal domain | 91.34 |
| >d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.1e-75 Score=573.41 Aligned_cols=230 Identities=45% Similarity=0.768 Sum_probs=211.6
Q ss_pred ceeeeccCcCCCCCCCCCCCCCccccccceEEEeeCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCccceEEEEeccc
Q 007467 74 RLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRAT 153 (602)
Q Consensus 74 ~l~vr~~~~t~~~~g~~p~~R~i~~~i~nGIInlDKP~G~TSheVVa~VKriL~~kKvGHsGTLDP~ATGVL~V~IG~AT 153 (602)
++.+++..+|+..+|++|.+|+|++++.+|||+||||.|||||+||+||||+|+.+|+||+|||||+||||||||+|+||
T Consensus 1 ~~~~~~~~~~~~~~g~~p~~r~i~~~~~~G~l~idKP~G~TS~~vv~~ikk~l~~kKvGH~GTLDP~AtGvL~v~iG~aT 80 (230)
T d2apoa2 1 ELIVKEEVETNWDYGCNPYERKIEDLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERAT 80 (230)
T ss_dssp CEEESSCCCCCTTSSCCGGGCCHHHHHHTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGG
T ss_pred CeEeccCCcCCcccCCCcccCCHHHHhcCcEEEEECCCCCCHHHHHHHHHHHcCCCCCCcccccCccceeeeeeeecHHH
Confidence 36788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEEEEEcCcCCCHHHHHHHHHhccccccccCcchhhcccCCeEEEEEEEEEEEEecCCceEEEEEEe
Q 007467 154 RLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISC 233 (602)
Q Consensus 154 KLv~~l~~~~KeYva~i~LG~~t~s~e~L~~aL~~F~G~I~Q~PP~ySAVKr~lR~rtIY~ieLLe~d~e~~~~~f~V~C 233 (602)
|+++|++..+|+|+|+++||..++ .++|++++.+|+|.|+|+||+|||+||+.|.++||++++++++. +.+.|+|.|
T Consensus 81 Kl~~~~~~~~K~Y~~~~~~g~~t~-~~di~~~l~~f~G~i~Q~PP~ySAiK~~~r~~~i~~l~l~~~~~--~~~~~~V~C 157 (230)
T d2apoa2 81 KTIPMWHIPPKEYVCLMHLHRDAS-EEDILRVFKEFTGRIYQRPPLKAAVKRRLRIRKIHELELLDKDG--KDVLFRVKC 157 (230)
T ss_dssp GGGGGTTSSCEEEEEEEEESSCCC-HHHHHHHHHHHSEEEECC-----------CEEEEEEEEEEEEET--TEEEEEEEE
T ss_pred HHHHHHhccCceEEEEEEeecccc-HhHHHHHHHhccCcccccCCeeeeeccccceeeeEEeeeccccC--CeEEEEEEE
Confidence 999999999999999999999985 78899999999999999999999999999999999999999987 689999999
Q ss_pred ecCchhHHHHHHHHHHhCCceEeceeeEEEEeCccccCcccChHHHHHHHhHhhcccchHHHhhhccchHHHHh
Q 007467 234 EAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLT 307 (602)
Q Consensus 234 s~GTYIRSL~~DIG~~LG~gAhM~eLRRtrsG~Fseed~lvTL~dL~Da~~~~~~~~des~Lr~~I~PlE~~L~ 307 (602)
|+||||||||+|||..|||+|||.+||||++|+|++++ ++||+||+++.|+|++..++.+|+++|+|+|.+|.
T Consensus 158 SkGTYIRSLa~DlG~~Lg~~a~l~~LrRt~~G~f~l~~-ai~l~dl~~a~~~~~~~~~~~~L~~~L~Pie~aL~ 230 (230)
T d2apoa2 158 QSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCFEEKD-AVYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGLR 230 (230)
T ss_dssp CTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGG-CBCHHHHHHHHHHHHTSCCCHHHHHHEEEGGGGGT
T ss_pred CCCccHHHHHHHHHHHcCCEEEEeECcCCccCCcCHHH-ccCHHHHHHHHHHHHhhCCHHHHHhhcCCHHHHhC
Confidence 99999999999999999999999999999999999986 58999999999999999999999999999999873
|
| >d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine transglycosylase, C3 domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423, C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
| >d2q07a1 b.122.1.1 (A:460-527) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525, C-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1k8wa3 b.122.1.1 (A:251-312) Pseudouridine synthase II TruB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase D, RluD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2as0a1 b.122.1.9 (A:1-72) Hypothetical protein PH1915, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1sgva1 b.122.1.1 (A:236-292) Pseudouridine synthase II TruB, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|