Citrus Sinensis ID: 007476

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600--

MEKNRWDLRFQNSGSSQSEESALDLERNYCHHPNLPSSSPSPLQPFASGGQHSESNAAYFSWPTLSRLNDAAEDRANYFGNLQKGVLPETLGRLPTGQQATTLLELMTIRAFHSKILRRFSLGTAIGFRIRRGVLTDIPAILVFVARKVHRQWLSHVQCLPAALEGPGGVWCDVDVVEFSYYGAPAPTPKEELYTELVDGLRGSDPCIGSGSQVASQETYGTLGAIVRSRTGNQQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIPFAEDFNLNNVTTSVKGVGEIGDVHIIDLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILLTGQNGEKPRPVGIIWGGTANRGRLKLKVGQPPVNWTSGVDLGRLLDLLELDLIATNEGFQVQDQRNASAAAIESTVGESPPAEREQSKEKTAERLEPFNLNIQQDLVDGESEQGPTPPFIHTEFHVEDGIESSSNVGHQFIPSFTGRSPMHQNNAQENKGSKSLSALRNGPDEDNYVSLQLGEPEPKRRKHSDTSLNVQESK

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEccccccccEEEEEEcccccccccccccccccccccccccEEEccEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccEEEEEEccEEEEccccccccccccccccccccccccccccccEEEEcccEEEEEcccccccccccccccccccccccccccccccccccccccEEEccccccccccccccEEEEEEEcccEEEEEEEEEEEEEccccEEEEEEEEEEccccccccccccccEEEEEcccccccccEEEEEEEEccccccEEEEcccccccccccccHHHHHHHccccEEEccccccHHHHHcccHHcccccccccccccccccHHHHHHcccccccccEEccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccc

cccccccHHHHHcccccccccHccHHcccccccccccccccccccccccccccccccEEEEcccccHcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccccccEEEEEEEccccHHcccHHHcccHHHcccccEEEEEEEEEEcccccccccccHcccHHHHcccccccccccccccccccccccEEEEEEEEcccccEEEEEEccEEEEEcccccccccccccccccccccccccEcccccccccEEEEEccccccccEEEccccEEEcccccccccccccEcEccccccEEEccccccHHHHHcccEEEEccccccccEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccEEEEEEcccccccccEEEEEEcccccccEEEEcccccccccccccHHHHHHHHccHEEcccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccEEEEccccccccccccccccccEEEccccEccccccEEEccccccccccccccccccccHHHHHHcccccccccEEEEEcccccccccccccccccccccc

meknrwdlrfqnsgssqseeSALDLErnychhpnlpssspsplqpfasggqhsesnaayfswptlsrlnDAAEDRANYFGnlqkgvlpetlgrlptgqqATTLLELMTIRAFHSKILRRFSLGTAIGFRIrrgvltdiPAILVFVARKVHRQWLSHvqclpaalegpggvwcdvdvvefsyygapaptpkeELYTELVDglrgsdpcigsgsqvasqeTYGTLGAIVRsrtgnqqvgfltnrhvavdldypnqkmfhplppslgpgvylGAVERATsfitddlwygifagtnpetfvradgafipfaedfnlnnvttsvkgvgeigdvhiidlqspinsligrqvmkvgrssglttGTVMAYALEyndekgicfftdflvvgenqqtfdlegdsgslilltgqngekprpvgiiwggtanrgrlklkvgqppvnwtsgvdlGRLLDLLELDliatnegfqvqdQRNASAAAIestvgesppaereqskektaerlepfnlNIQQdlvdgeseqgptppfihtefhvedgiesssnvghqfipsftgrspmhqnnaqenkgskslsalrngpdednyvslqlgepepkrrkhsdtslnvqesk

meknrwdlrfqnsgssqsEESALDLERNYCHHPNLPSSSPSPLQPFASGGQHSESNAAYFSWPTLSRLNDAAEDRANYFGNLQKGVLPETLGRLPTGQQATTLLELMTIRAFHSKILRRFSLGTAIGFRIRRGVLTDIPAILVFVARKVHRQWLSHVQCLPAALEGPGGVWCDVDVVEFSYygapaptpKEELYTELVDGLRGSDPCIGSGSQVASQETYGTLGAIVRSRTGNQQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIPFAEDFNLNNVTTSVKGVGEIGDVHIIDLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILLTgqngekprpVGIIWGGTANRGRLKLKVGQPPVNWTSGVDLGRLLDLLELDLIATNEGFQVQDQRNASAAAIestvgesppaereqskektaerlepfNLNIQQDLVDGESEQGPTPPFIHTEFHVEDGIESSSNVGHQFIPSFTGRSPMHQNNAQENKGSKSLSALRNGPDEDNYVSlqlgepepkrrkhsdtslnvqesk

MEKNRWDLRFQNSGSSQSEESALDLERNYCHHpnlpssspsplqpfasGGQHSESNAAYFSWPTLSRLNDAAEDRANYFGNLQKGVLPETLGRLPTGQQATTLLELMTIRAFHSKILRRFSLGTAIGFRIRRGVLTDIPAILVFVARKVHRQWLSHVQCLPAALEGPGGVWCDVDVVEFSYYGAPAPTPKEELYTELVDGLRGSDPCIGSGSQVASQETYGTLGAIVRSRTGNQQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIPFAEDFNLNNVTTSVKGVGEIGDVHIIDLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILLTGQNGEKPRPVGIIWGGTANRGRLKLKVGQPPVNWTSGVdlgrlldlleldlIATNEGFQVQDQRNASAAAIESTVGESPPAEREQSKEKTAERLEPFNLNIQQDLVDGESEQGPTPPFIHTEFHVEDGIESSSNVGHQFIPSFTGRSPMHQNNAQENKGSKSLSALRNGPDEDNYVSLQLGEPEPKRRKHSDTSLNVQESK

*********************************************************AYFSWPTLSRLNDAAEDRANYFGNLQKGVLPETLGRLPTGQQATTLLELMTIRAFHSKILRRFSLGTAIGFRIRRGVLTDIPAILVFVARKVHRQWLSHVQCLPAALEGPGGVWCDVDVVEFSYYGAPAPTPKEELYTELVDGLRGSDPCIGSGSQVASQETYGTLGAIVRSRTGNQQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIPFAEDFNLNNVTTSVKGVGEIGDVHIIDLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILLTGQNGEKPRPVGIIWGGTANRGRLKLKVGQPPVNWTSGVDLGRLLDLLELDLIATNEGFQ**********************************************************************************************************************************************

****************************YCHHPN******************SESNAAYFSWPTLSRLNDAAEDRANYFGNLQKGVL**************TLLELMTIRAFHSKILRRFSLGTAIGFRIRRGVLTDIPAILVFVARKVHRQWLSHVQCLPAALEGPGGVWCDVDVVEFSYYGAPAPTPKEELYTELVDGLRGSDPCIGSGSQVASQETYGTLGAIVRSRTGNQQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIPFAEDFNLNNVTTSVKGVGEIGDVHIIDLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTDFLVVGENQ******GDSGSLILLTGQNGEKPRPVGIIWGGTANRGRLKLKVGQPPVNWTSGVDLGRLLDLLELDLIATNEGF****Q****AAAIEST*G****************RLEPFNLNI********************EFHVEDGIESSSNVGHQFIPS***************************PDEDNYVSL***********************

***********************DLERNYCHHPNLPSSSPSPLQPFASGGQHSESNAAYFSWPTLSRLNDAAEDRANYFGNLQKGVLPETLGRLPTGQQATTLLELMTIRAFHSKILRRFSLGTAIGFRIRRGVLTDIPAILVFVARKVHRQWLSHVQCLPAALEGPGGVWCDVDVVEFSYYGAPAPTPKEELYTELVDGLRGSDPCIGSGSQVASQETYGTLGAIVRSRTGNQQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIPFAEDFNLNNVTTSVKGVGEIGDVHIIDLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILLTGQNGEKPRPVGIIWGGTANRGRLKLKVGQPPVNWTSGVDLGRLLDLLELDLIATNEGFQVQ*****************************AERLEPFNLNIQQDLVDGESEQGPTPPFIHTEFHVEDGIESSSNVGHQFIPSFTGRSPMHQNNAQENKGSKSLSALRNGPDEDNYVSLQLGE*******************

**********************LDLERNYCHHPNLPSSSPSPLQPFA*GGQHSESNAAYFSWPTLSRLNDAAEDRANYFGNLQKGVLPETLGRLPTGQQATTLLELMTIRAFHSKILRRFSLGTAIGFRIRRGVLTDIPAILVFVARKVHRQWLSHVQCLPAALEGPGGVWCDVDVVEFSYYGAPAPTPKEELYTELVDGLRGSDPCIGSGSQVASQETYGTLGAIVRSRTGNQQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIPFAEDFNLNNVTTSVKGVGEIGDVHIIDLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILLTGQNGEKPRPVGIIWGGTANRGRLKLKVGQPPVNWTSGVDLGRLLDLLELDLIATNEGFQVQDQRNASAAAIESTVGESPPAEREQSKEKTAERLEPFNLNIQQDLVDGESEQGPTPPFIHTEFHVEDGIESSSNVGHQFIPSFTGRSPMH*******KGSKSLSALRNGPDEDNYVSLQLGE*******************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		602
224136616		594	predicted protein [Populus trichocarpa]	0.983	0.996	0.853	0.0
255566289		593	conserved hypothetical protein [Ricinus	0.985	1.0	0.846	0.0
224114770		593	predicted protein [Populus trichocarpa]	0.981	0.996	0.853	0.0
297737962		684	unnamed protein product [Vitis vinifera]	0.985	0.866	0.854	0.0
225423710		596	PREDICTED: uncharacterized protein LOC10	0.985	0.994	0.854	0.0
356521576		600	PREDICTED: uncharacterized protein LOC10	0.993	0.996	0.819	0.0
356576395		600	PREDICTED: uncharacterized protein LOC10	0.990	0.993	0.817	0.0
356576393		598	PREDICTED: uncharacterized protein LOC10	0.990	0.996	0.820	0.0
147798987		1092	hypothetical protein VITISV_008456 [Viti	0.985	0.543	0.772	0.0
357475191		597	hypothetical protein MTR_4g084020 [Medic	0.985	0.993	0.800	0.0

>gi\|224136616\|ref\|XP_002322374.1\| predicted protein [Populus trichocarpa] gi\|222869370\|gb\|EEF06501.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1008 bits (2605), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/595 (85%), Positives = 540/595 (90%), Gaps = 3/595 (0%)

Query: 1   MEKNRWDLRFQNSGSSQSEESALDLERNYCHHPNLPSSSPSPLQPFASGGQHSESNAAYF 60
           M++NR  LR  +SGSSQSEESALDLERNYC HPNL  SSPSPLQPFASGGQHSESNAAYF
Sbjct: 1   MDRNRLGLRIHHSGSSQSEESALDLERNYCSHPNLLWSSPSPLQPFASGGQHSESNAAYF 60

Query: 61  SWPTLSRLNDAAEDRANYFGNLQKGVLPETLGRLPTGQQATTLLELMTIRAFHSKILRRF 120
           SWPTLSRLNDAAE RANYFGNLQKGVLPETLGRLP+GQ+ATTLLELMTIRAFHSKILRRF
Sbjct: 61  SWPTLSRLNDAAEVRANYFGNLQKGVLPETLGRLPSGQRATTLLELMTIRAFHSKILRRF 120

Query: 121 SLGTAIGFRIRRGVLTDIPAILVFVARKVHRQWLSHVQCLPAALEGPGGVWCDVDVVEFS 180
           SLGTAIGFRIRRG LTDIPAILVFVARKVHRQWLSHVQCLPAALEGPGGVWCDVDVVEFS
Sbjct: 121 SLGTAIGFRIRRGDLTDIPAILVFVARKVHRQWLSHVQCLPAALEGPGGVWCDVDVVEFS 180

Query: 181 YYGAPAPTPKEELYTELVDGLRGSDPCIGSGSQVASQETYGTLGAIVRSRTGNQQVGFLT 240
           YYG PA TPKE+LYTELVDGLRGSDPCIGSGSQVA+QETYGTLGAIV+SRTGN+QVGFLT
Sbjct: 181 YYGVPAATPKEQLYTELVDGLRGSDPCIGSGSQVANQETYGTLGAIVKSRTGNRQVGFLT 240

Query: 241 NRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRAD 300
           NRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITD+LWYGIFAGTNPETFVRAD
Sbjct: 241 NRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDELWYGIFAGTNPETFVRAD 300

Query: 301 GAFIPFAEDFNLNNVTTSVKGVGEIGDVHIIDLQSPINSLIGRQVMKVGRSSGLTTGTVM 360
           GAFIPFAEDFN+NNV  +VKGVGE+GDVH+IDLQ+PINSLIGRQV+KVGRSSGLTTGT+M
Sbjct: 301 GAFIPFAEDFNMNNVNITVKGVGEVGDVHVIDLQAPINSLIGRQVVKVGRSSGLTTGTIM 360

Query: 361 AYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILLTGQNGEKPRPVGIIWGGTAN 420
           AYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILLTG++ EKPRPVGIIWGGTAN
Sbjct: 361 AYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILLTGRDCEKPRPVGIIWGGTAN 420

Query: 421 RGRLKLKVGQPPVNWTSGVDLGRLLDLLELDLIATNEGFQ--VQDQRNASAAAIESTVGE 478
           RGRLKLKVGQPP NWTSGVDLGRLLDLLELD+I TNEG Q  +QDQRNA A  I+STVGE
Sbjct: 421 RGRLKLKVGQPPENWTSGVDLGRLLDLLELDIITTNEGLQAAIQDQRNALAQGIDSTVGE 480

Query: 479 SPPAEREQSKEKTAERLEPFNLNIQQDLVDGESEQGPTPPFIHTEFHVEDGIESSSNVGH 538
           S P +R  SKEK  E  EP NLNIQQ   +GES+ G TP FI  EFH+ED +E+S NV H
Sbjct: 481 SSPLDRVPSKEKIEENFEPLNLNIQQVTGEGESQHGQTPLFIGPEFHIEDAVEASPNVEH 540

Query: 539 QFIPSFTGRSPMHQNNAQENKGSKSLSALRNGPDEDNYVSLQLGEPEPKRRKHSD 593
           QFIPSF+GRSPMH N  QEN   K+LSALR+  DE  + SL LGEPEPKRRK SD
Sbjct: 541 QFIPSFSGRSPMHDNTPQENPELKNLSALRSDSDEMCF-SLHLGEPEPKRRKQSD 594

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255566289\|ref\|XP_002524131.1\| conserved hypothetical protein [Ricinus communis] gi\|223536598\|gb\|EEF38242.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|224114770\|ref\|XP_002332278.1\| predicted protein [Populus trichocarpa] gi\|222832440\|gb\|EEE70917.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297737962\|emb\|CBI27163.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225423710\|ref\|XP_002277727.1\| PREDICTED: uncharacterized protein LOC100250825 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356521576\|ref\|XP_003529430.1\| PREDICTED: uncharacterized protein LOC100796081 [Glycine max]	Back alignment and taxonomy information

>gi\|356576395\|ref\|XP_003556317.1\| PREDICTED: uncharacterized protein LOC100816119 isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356576393\|ref\|XP_003556316.1\| PREDICTED: uncharacterized protein LOC100816119 isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|147798987\|emb\|CAN61635.1\| hypothetical protein VITISV_008456 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357475191\|ref\|XP_003607881.1\| hypothetical protein MTR_4g084020 [Medicago truncatula] gi\|124359654\|gb\|ABN06026.1\| Peptidase, trypsin-like serine and cysteine proteases [Medicago truncatula] gi\|355508936\|gb\|AES90078.1\| hypothetical protein MTR_4g084020 [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		602
TAIR\|locus:2155317		607	AT5G45030 [Arabidopsis thalian	0.986	0.978	0.690	3.3e-214
TAIR\|locus:505006292		579	AT2G35155 [Arabidopsis thalian	0.946	0.984	0.680	1.2e-209
TAIR\|locus:2089255		558	AT3G12950 [Arabidopsis thalian	0.873	0.942	0.625	1e-171

TAIR\|locus:2155317 AT5G45030 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2070 (733.7 bits), Expect = 3.3e-214, P = 3.3e-214
 Identities = 424/614 (69%), Positives = 477/614 (77%)

Query:     1 MEKNRWDLRFQNSGSSQSEESA-LDLERNYCHHXXXXXXXXXXXXXXXXGGQHSESNAA- 58
             ME  R DLRF +S SSQS ESA LDL++N  +H                G QH E++AA 
Sbjct:     1 MEGKRLDLRFHHSTSSQSVESAALDLDKNVYNHIKLASSSPLQPFPS--GAQHPETSAAA 58

Query:    59 -YFSWPTLSRLNDAAEDRANYFGNLQKGVLPETLGRLPTGQQATTLLELMTIRAFHSKIL 117
              YFSWPT SRLND+AEDRANYF NLQKGVLPE+   LPTG++ATTLLELM IRAFHSK L
Sbjct:    59 AYFSWPTSSRLNDSAEDRANYFANLQKGVLPESFDGLPTGKKATTLLELMMIRAFHSKNL 118

Query:   118 RRFSLGTAIGFRIRRGVLTDIPAILVFVARKVHRQWLSHVQCLPAALEGPGGVWCDVDVV 177
             RRFSLGTAIGFRIRRGVLT+I AILVFVARKVH+QWL+ +QCLP ALEGPGGVWCDVDVV
Sbjct:   119 RRFSLGTAIGFRIRRGVLTNIAAILVFVARKVHKQWLNPLQCLPTALEGPGGVWCDVDVV 178

Query:   178 EFSYYGAPAPTPKEELYTELVDGLRGSDPCIGSGSQVASQETYGTLGAIVRSRTGNQQVG 237
             EF YYGAPA TPKE++YTELVD LRGS   IGSGSQVASQETYGTLGAIV+S+TG +QVG
Sbjct:   179 EFQYYGAPAQTPKEQVYTELVDDLRGSGSSIGSGSQVASQETYGTLGAIVKSKTGIRQVG 238

Query:   238 FLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFV 297
             FLTNRHVAVDLDYP+QKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFV
Sbjct:   239 FLTNRHVAVDLDYPSQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFV 298

Query:   298 RADGAFIPFAEDFNLNNVTTSVKGVGEIGDVHIIDLQSPINSLIGRQVMKVGRSSGLTTG 357
             RADGAFIPFAEDFN NNVTT+VKG+GEIGD+H  DLQSP+NSLIGR+V+KVGRSSGLTTG
Sbjct:   299 RADGAFIPFAEDFNTNNVTTTVKGIGEIGDIHATDLQSPVNSLIGRKVVKVGRSSGLTTG 358

Query:   358 TVMAYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILLTG--QNGEKPRPVGIIW 415
             T+MAYALEYNDEKGICF TDFLVVGENQQTFDLEGDSGSLILL    +  EKPRPVGIIW
Sbjct:   359 TIMAYALEYNDEKGICFLTDFLVVGENQQTFDLEGDSGSLILLAAGDEKNEKPRPVGIIW 418

Query:   416 GGTANRGRLKLKVGQPPVNWTSGVXXXXXXXXXXXXXIATNEGFQ--VQDQRNA-SAAAI 472
             GGTANRGRLKLKVG+ P NWTSGV             I +NEG Q  V +QRN    AA+
Sbjct:   419 GGTANRGRLKLKVGEQPENWTSGVDLGRVLNLLELDLITSNEGLQAAVLEQRNGIMCAAV 478

Query:   473 ESTVGESPPAEREQSKEKTAERLEPFNLNIQQDLVDGESEQGPTPPFIHTEFHVEDGIES 532
             +STV ES P     S+ KT E  EP NLN+QQ L++ ++        IH EF +ED +ES
Sbjct:   479 DSTVVESSPGVCNISRCKTGENFEPINLNVQQVLIEDDNSN------IHPEFQIEDVLES 532

Query:   533 SSNVG-HQFIPSFTGR-SPMHQN-NAQENKGSKSLSALRNGPDEDNY-VSLQLGEPEPKR 588
              + +  HQFIPS +   S +HQ  N  EN  SK+LS+L+     D    SLQLGE + K+
Sbjct:   533 VAVIEEHQFIPSSSNNGSALHQKPNGPENLESKNLSSLKTSSSGDEIGFSLQLGESDTKK 592

Query:   589 RKHSDTSLNVQESK 602
             RK +D+    QE +
Sbjct:   593 RKRTDSPDGSQEDE 606

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR\|locus:505006292 AT2G35155 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2089255 AT3G12950 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00151009	hypothetical protein (595 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		602
PF08192		695	Peptidase_S64: Peptidase family S64; InterPro: IPR	99.69
TIGR02038		351	protease_degS periplasmic serine pepetdase DegS. T	97.95
PRK10139		455	serine endoprotease; Provisional	97.94
PRK10898		353	serine endoprotease; Provisional	97.8
TIGR02037		428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	97.78
PRK10942		473	serine endoprotease; Provisional	97.78
PF13365		120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	97.06
PF00089		220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	96.8
PF00863		235	Peptidase_C4: Peptidase family C4 This family belo	95.41
cd00190		232	Tryp_SPc Trypsin-like serine protease; Many of the	95.17
smart00020		229	Tryp_SPc Trypsin-like serine protease. Many of the	95.07
COG0265		347	DegQ Trypsin-like serine proteases, typically peri	94.88
KOG1421		955	consensus Predicted signaling-associated protein (	94.68
PF00944		158	Peptidase_S3: Alphavirus core protein ; InterPro:	94.34
COG3591		251	V8-like Glu-specific endopeptidase [Amino acid tra	92.99
PF00947		127	Pico_P2A: Picornavirus core protein 2A; InterPro:	90.33
PF05579		297	Peptidase_S32: Equine arteritis virus serine endop	88.26
PF00949		132	Peptidase_S7: Peptidase S7, Flavivirus NS3 serine	80.86

>PF08192 Peptidase_S64: Peptidase family S64; InterPro: IPR012985 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

Probab=99.69  E-value=1.3e-16  Score=177.16  Aligned_cols=100  Identities=30%  Similarity=0.448  Sum_probs=84.9

Q ss_pred             cccCCCeEEEeeecccceEEEEEEEEEEEeCCCCeEEEEEEEEECCCCCCCCCCCCccceEEeeccC-CCCCceEEEEEe
Q 007476          338 NSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILLTGQN-GEKPRPVGIIWG  416 (602)
Q Consensus       338 ~p~lG~~V~KvGRTTGlT~G~I~ai~V~y~~~~G~~~F~dqIIt~~~~~~fS~~GDSGSlVl~~~~~-d~~~~aVGLlfG  416 (602)
                      ....|+.|+|+|||||+|+|+|+++++.|+.+ |...+.+++|.+.+...|+.+|||||+|+.+.++ ...-.+|||+++
T Consensus       586 ~~~~G~~VfK~GrTTgyT~G~lNg~klvyw~d-G~i~s~efvV~s~~~~~Fa~~GDSGS~VLtk~~d~~~gLgvvGMlhs  664 (695)
T PF08192_consen  586 NLVPGMEVFKVGRTTGYTTGILNGIKLVYWAD-GKIQSSEFVVSSDNNPAFASGGDSGSWVLTKLEDNNKGLGVVGMLHS  664 (695)
T ss_pred             ccCCCCeEEEecccCCccceEecceEEEEecC-CCeEEEEEEEecCCCccccCCCCcccEEEecccccccCceeeEEeee
Confidence            45679999999999999999999999888876 5567899999997778899999999999965544 334569999999


Q ss_pred             ccCCCcccccccCCCCcceEEeechHHHHHhcC
Q 007476          417 GTANRGRLKLKVGQPPVNWTSGVDLGRLLDLLE  449 (602)
Q Consensus       417 Gs~~~gr~~~~~g~~p~~~Tl~npI~~VL~~L~  449 (602)
                      .++..           ..|.+|+||..||+.|+
T Consensus       665 ydge~-----------kqfglftPi~~il~rl~  686 (695)
T PF08192_consen  665 YDGEQ-----------KQFGLFTPINEILDRLE  686 (695)
T ss_pred             cCCcc-----------ceeeccCcHHHHHHHHH
Confidence            88643           48999999999999875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This family of fungal proteins is involved in the processing of membrane bound transcription factor Stp1 [] and belongs to MEROPS petidase family S64 (clan PA). The processing causes the signalling domain of Stp1 to be passed to the nucleus where several permease genes are induced. The permeases are important for uptake of amino acids, and processing of tp1 only occurs in an amino acid-rich environment. This family is predicted to be distantly related to the trypsin family (MEROPS peptidase family S1) and to have a typical trypsin-like catalytic triad [].

>TIGR02038 protease_degS periplasmic serine pepetdase DegS	Back alignment and domain information

>PRK10139 serine endoprotease; Provisional	Back alignment and domain information

>PRK10898 serine endoprotease; Provisional	Back alignment and domain information

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family	Back alignment and domain information

>PRK10942 serine endoprotease; Provisional	Back alignment and domain information

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A	Back alignment and domain information

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF00863 Peptidase_C4: Peptidase family C4 This family belongs to family C4 of the peptidase classification	Back alignment and domain information

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms	Back alignment and domain information

>smart00020 Tryp_SPc Trypsin-like serine protease	Back alignment and domain information

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]	Back alignment and domain information

>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]	Back alignment and domain information

>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF05579 Peptidase_S32: Equine arteritis virus serine endopeptidase S32; InterPro: IPR008760 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF00949 Peptidase_S7: Peptidase S7, Flavivirus NS3 serine protease ; InterPro: IPR001850 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		602
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2sga_A		181	Proteinase A; hydrolase (serine proteinase); 1.50A	2e-07
2oua_A		188	Serine protease, protein NAPA; kinetic stability,	3e-07
2qa9_E		185	Streptogrisin-B; chymotrypsin-type serine peptidas	6e-07
1hpg_A		187	Glutamic acid specific protease; serine protease,	7e-07
2ea3_A		189	Chymotrypsin; celloulomonas, protease, hydrolase;	2e-05
2h5c_A		198	Alpha-lytic protease; serine protease, acylation t	4e-05
2pfe_A		186	Protease A, alkaline serine protease, TFPA; beta-b	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 54.1 bits (129), Expect = 1e-07
 Identities = 68/555 (12%), Positives = 142/555 (25%), Gaps = 176/555 (31%)

Query: 82  LQKGVLPETLGRLPTGQQATTLLELMTIRAFHSKILRRFSLGTAIGFRIRRGVLTDIPAI 141
           L K  +   +         T  L   T+ +   +++++F +   +          +    
Sbjct: 46  LSKEEIDHIIM-SKDAVSGTLRL-FWTLLSKQEEMVQKF-VEEVLR--------INYK-- 92

Query: 142 LVFVARKVHRQWLSHVQCLPAALEGPGGVWCDVDVVEFSYYGAPAPTPKEELYTELVDGL 201
             F+   +  +           +E    ++ D  V       A     + + Y +L   L
Sbjct: 93  --FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF------AKYNVSRLQPYLKLRQAL 144

Query: 202 RGSDPC--------IGSGSQVASQET---------------YGTLGAIVRSRTGNQQVGF 238
               P         +GSG    + +                +  L       +    +  
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK---NCNSPETVLEM 201

Query: 239 LTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATS--------FITDDLWYGIFAG 290
           L      +D ++   +  H     L        + R            +  ++       
Sbjct: 202 LQKLLYQIDPNW-TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ------ 254

Query: 291 TNPETFVRADGAFIPFAEDFNLNN---VTTSVKGVGEIGDVHIIDLQSPINSLIGRQVMK 347
            N + +             FNL+    +TT            + D    +++     +  
Sbjct: 255 -NAKAW-----------NAFNLSCKILLTTR--------FKQVTDF---LSAATTTHISL 291

Query: 348 VGRSSGLTTGTVMAYALEYNDEKGICFFTDFLVVGENQQTFDL--EGDSGSLILLTGQNG 405
              S  LT                      +L    + +  DL  E  + +         
Sbjct: 292 DHHSMTLTP----DEVKS--------LLLKYL----DCRPQDLPREVLTTN--------- 326

Query: 406 EKPRPVGIIWGGTANRGRLKLKVGQPPVNWTSGVDLGRLLDLLELDLIATNEGFQVQDQR 465
             PR + II                              +     D +AT + ++     
Sbjct: 327 --PRRLSII---------------------------AESIR----DGLATWDNWK-HVNC 352

Query: 466 NASAAAIESTVGESPPAEREQSKEKTAERLEPFNLNIQQDLV-----DGESEQGPTPPFI 520
           +     IES++    PAE  +  ++ +  + P + +I   L+     D           +
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKS---DVMVV 407

Query: 521 HTEFHVEDGIESSSNVGHQFIPS--------FTGRSPMHQN-----NAQENKGSKSLSAL 567
             + H    +E         IPS              +H++     N  +   S  L   
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP- 466

Query: 568 RNGPDEDNYVSLQLG 582
              P  D Y    +G
Sbjct: 467 ---PYLDQYFYSHIG 478

PyMOL of 1vt4

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A Length = 181	Back alignment and structure

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba} Length = 188	Back alignment and structure

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ... Length = 185	Back alignment and structure

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1 Length = 187	Back alignment and structure

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis} Length = 189	Back alignment and structure

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ... Length = 198	Back alignment and structure

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca} Length = 186	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		602
d2qaaa1		185	Protease B {Streptomyces griseus, strain k1 [TaxId	99.87
d2sgaa_		181	Protease A {Streptomyces griseus, strain k1 [TaxId	99.85
d2h5ca1		198	alpha-Lytic protease {Lysobacter enzymogenes, 495	99.78
d1hpga_		187	Glutamic acid-specific protease {Streptomyces gris	99.56
d1l1ja_		228	Protease Do (DegP, HtrA), catalytic domain {Thermo	98.97
d2z9ia2		221	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.85
d1agja_		242	Epidermolytic (exfoliative) toxin A {Staphylococcu	98.79
d1ky9a2		249	Protease Do (DegP, HtrA), catalytic domain {Escher	98.73
d1lcya2		205	Mitochondrial serine protease HtrA2, catalytic dom	98.71
d2o8la1		216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	98.63
d2qf3a1		210	Stress sensor protease DegS, catalytic domain {Esc	98.6
d1lvmb_		219	TEV protease (nucleat inclusion protein A, NIA) {T	98.59
d1qtfa_		246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	98.48
d2bhga1		199	3C cysteine protease (picornain 3C) {Foot-and-mout	98.1
d1p3ca_		215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	97.54
d1q3xa1		242	Mannan-binding lectin serine protease 2 (MASP-2),	96.99
d2z7fe1		218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	96.77
d1arba_		263	Achromobacter protease {Achromobacter lyticus, str	96.66
d1nn6a_		224	Chymase (mast cell protease I) {Human (Homo sapien	96.49
d1hj8a_		222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	96.14
d1fuja_		221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	95.92
d1gdna_		224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	95.78
g2pka.1		232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	95.68
d1xx9a_		237	Coagulation factor XI {Human (Homo sapiens) [TaxId	95.56
d1bioa_		228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	95.55
d1eufa_		224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	95.55
d1op0a_		234	Venom serine protease {Hundred-pace snake (Agkistr	95.51
d1brup_		241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	95.42
d1npma_		225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	95.37
d1ep5a_		156	Viral capsid protein {Venezuelan equine encephalit	95.37
d2fpza1		243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	95.36
d1wyka_		152	Viral capsid protein {Sindbis virus [TaxId: 11034]	95.29
d2bz6h1		254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	95.16
d1gvza_		237	Prostate specific antigen (PSA kallikrein) {Horse	95.11
g1h8d.1		289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	95.07
d1vcpa_		149	Viral capsid protein {Semliki forest virus [TaxId:	95.01
d1a7sa_		225	Heparin binding protein, HBP {Human (Homo sapiens)	94.91
d1fi8a_		227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	94.86
d1fq3a_		227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	94.81
d1eq9a_		222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	94.63
g1fiw.1		274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	94.63
d1mzaa_		240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	94.32
g1gg6.1		238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	94.12
d1fona_		232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	93.87
d1m9ua_		241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	93.85
d2hlca_		230	HL collagenase {Common cattle grub (Hypoderma line	93.45
d1j16a_		223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	93.14
d1lo6a_		221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	92.78
d1pytd_		251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	92.77
d2f91a1		237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	92.76
d1rfna_		235	Coagulation factor IXa, protease domain {Human (Ho	92.54
d1gvkb_		240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	92.43
g1gj7.1		256	Urokinase-type plasminogen activator (LMW U-PA), c	92.31
d1elta_		236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	92.19
d1ao5a_		237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	92.11
d1z8ga1		255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	92.05
d1cqqa_		180	3C cysteine protease (picornain 3C) {Human rhinovi	91.81
d1t32a1		224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	91.56
d1tona_		235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	91.49
d2p3ub1		233	Coagulation factor Xa, protease domain {Human (Hom	91.2
g1rtf.1		260	Two-chain tissue plasminogen activator (TC)-T-PA {	91.19
d1ekbb_		235	Enteropeptidase (enterokinase light chain) {Cow (B	90.07
d1mbma_		198	NSP4 proteinase {Equine arteritis virus, EAV [TaxI	89.84
d2h6ma1		212	3C cysteine protease (picornain 3C) {Human hepatit	89.82
d1sgfa_		228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	89.73
d1l1na_		180	3C cysteine protease (picornain 3C) {Human poliovi	89.23
d1fxya_		228	Coagulation factor Xa-trypsin chimera {Synthetic,	88.73
d1azza_		226	Crab collagenase {Atlantic sand fiddler crab (Uca	87.76
d1rjxb_		247	Plasmin(ogen), catalytic domain {Human (Homo sapie	87.35
d1si5h_		234	Hepatocyte growth factor, HGF {Human (Homo sapiens	86.01
d1orfa_		232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	84.19
d2hrva_		139	2A cysteine proteinase {Human rhinovirus 2 [TaxId:	83.88
d1hj9a_		223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	83.2

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}	Back information, alignment and structure

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=99.87  E-value=3.3e-21  Score=134.63  Aligned_cols=174  Identities=21%  Similarity=0.203  Sum_probs=117.0

Q ss_pred             CEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             40114799982899843699133930026898776678999983287545898223310254010133225899864123
Q 007476          219 TYGTLGAIVRSRTGNQQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVR  298 (602)
Q Consensus       219 taGTLGcLV~D~~G~~~~yiLSNnHVla~~n~~~q~~~~pg~pIlQPG~~DGG~~r~~kfipl~~~~~i~~g~np~N~VD  298 (602)
                      ..+|+|+.|++.   ...|||||.||.......            .....++..  ...++   ..      ..|.    
T Consensus        12 ~~CT~Gf~v~~~---~~~~ilTA~Hcv~~~~~~------------~~~~~~~~~--~g~~~---~~------~~~~----   61 (185)
T d2qaaa1          12 GRCSLGFNVRSG---STYYFLTAGHCTDGATTW------------WANSARTTV--LGTTS---GS------SFPN----   61 (185)
T ss_dssp             CEEECCEEEEET---TEEEEEECHHHHTTCCEE------------ESSTTSCSE--EEEEE---EE------ECSB----
T ss_pred             CCEEEEEEEEEC---CCCEEEECCCCCCCCCEE------------EEECCCCEE--EEEEE---EC------CCCC----
T ss_conf             708044819979---952999897846899879------------997689819--64488---52------4789----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEEEEECCCCEEEEEEE
Q ss_conf             55221234444688876654333343585013304676553479909995302563389999999999189993999899
Q 007476          299 ADGAFIPFAEDFNLNNVTTSVKGVGEIGDVHIIDLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTDF  378 (602)
Q Consensus       299 aD~AlI~~a~~~d~s~vs~~I~~iG~IG~v~~vdlqg~~~p~iG~~V~KvGRTTGlT~G~I~ai~V~y~~~~G~~~F~dq  378 (602)
                      .|+||+++...   ..  +....+..      ..+.+...+.+|+.|+|.|++||+++|.|.++...++...+ ..+.++
T Consensus        62 ~D~All~~~~~---~~--~~~~~~~~------~~v~~~~~~~~G~~v~~~G~~tg~~~g~v~~~~~~~~~~~~-~~~~~~  129 (185)
T d2qaaa1          62 NDYGIVRYTNT---TI--PKDGTVGG------QDITSAANATVGMAVTRRGSTTGTHSGSVTALNATVNYGGG-DVVYGM  129 (185)
T ss_dssp             SCEEEEEECCS---SS--CCCSEETT------EECCEECCCCTTCEEEEEETTTEEEEEEEEEEEEEEECSTT-CEEEEE
T ss_pred             CCEEEEEECCC---CC--CCCCCCCC------EECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEECCCC-CEEEEE
T ss_conf             88699996268---86--64243674------00068874779999998057777343304766787773899-706137


Q ss_pred             EEECCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHCCCEEE
Q ss_conf             997788888789998331479512489999239999704688765211138999531785625988875196698
Q 007476          379 LVVGENQQTFDLEGDSGSLILLTGQNGEKPRPVGIIWGGTANRGRLKLKVGQPPVNWTSGVDLGRLLDLLELDLI  453 (602)
Q Consensus       379 IIt~~~~~~FS~~GDSGSlVl~~~~~d~~~~~VGLlfGGs~~~gr~~~~~g~~p~~~Tl~npI~~VL~~L~V~Lv  453 (602)
                      +.+..    .+.+||||+.|+     + .++++|+++++....         .....++|.||..+|+.|+|+|.
T Consensus       130 ~~~~~----~~~~GdSGGPv~-----~-~~~~vGi~~~g~~~~---------~~~~~~~~~Pi~~~l~~~g~~l~  185 (185)
T d2qaaa1         130 IRTNV----CAEPGDSGGPLY-----S-GTRAIGLTSGGSGNC---------SSGGTTFFQPVTEALSAYGVSVY  185 (185)
T ss_dssp             EEESC----CCCTTCTTCEEE-----E-TTEEEEEEEEEEEET---------TTEEEEEEEEHHHHHHHHTCEEC
T ss_pred             EEEEE----EECCCCCCCEEE-----E-CCEEEEEEEEEECCC---------CCCCEEEEEEHHHHHHHHCCEEC
T ss_conf             99954----616876456258-----8-998999998861687---------87765999998998997597309

PyMOL of d2qaaa1

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}	Back information, alignment and structure

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}	Back information, alignment and structure

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}	Back information, alignment and structure

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}	Back information, alignment and structure

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}	Back information, alignment and structure

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}	Back information, alignment and structure

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}	Back information, alignment and structure

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}	Back information, alignment and structure

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}	Back information, alignment and structure

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}	Back information, alignment and structure

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine encephalitis virus [TaxId: 11036]}	Back information, alignment and structure

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId: 11034]}	Back information, alignment and structure

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}	Back information, alignment and structure

>d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus [TaxId: 11033]}	Back information, alignment and structure

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}	Back information, alignment and structure

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	Back information, alignment and structure

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}	Back information, alignment and structure

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}	Back information, alignment and structure

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}	Back information, alignment and structure

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]}	Back information, alignment and structure

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}	Back information, alignment and structure

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1mbma_ b.47.1.3 (A:) NSP4 proteinase {Equine arteritis virus, EAV [TaxId: 11047]}	Back information, alignment and structure

>d2h6ma1 b.47.1.4 (A:1-212) 3C cysteine protease (picornain 3C) {Human hepatitis A virus [TaxId: 208726]}	Back information, alignment and structure

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1l1na_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human poliovirus 1 Mahoney [TaxId: 12081]}	Back information, alignment and structure

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}	Back information, alignment and structure

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}	Back information, alignment and structure

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2hrva_ b.47.1.4 (A:) 2A cysteine proteinase {Human rhinovirus 2 [TaxId: 12130]}	Back information, alignment and structure

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure