Citrus Sinensis ID: 007529

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600

MTATLNTGPHQILPFTAYDHLGFLQFCSGSSLAYELTKPGKITRKTRRRSLASRVLFGSFSFAAWEKMQLHISPSLRHVTVLPGKGVREFIKVKVGSRRLSYRMLFYSLLFLTFLLRFVFVLSAVDTIDGESKCSTIGCLGKRLGPRILGRRPQSTVPEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS

cccccccccccccccccccccccHHHccccccEEEccccccccccccHHHHHHHHHcccccHHHHcccEEEEccccEEEEEEcccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcHHHHHccccccccccccccccEEEEEEcccccHHHHHHHHHHHHccccccEEEEEEEccccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccccccHHHHHHHHcccccccccEEEEEEccEEEEcccHHHHHccccccEEEEEEccccccccccHHHHHHHccccHHHHHccccccccccccccHHccHHHHHHHccHHHHHHHHHHHcccccccccccccHHHHHHccccEEEEcccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHcccccHHHHHcccccc

cccEccccccccccccHHHHHcHHEEcccccHHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHEEccccccEEEEcccccHHHHHEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHcccccccccccccccccEEEEEEcccHHHHEEEEHHHHHcccccccEEEEEEEccccHHHHHHHHHcccccccEEEEEEccccccccccccHHHHHHHHccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHccEEEEEcccEEEEEccHHHHcccccccEEcEEEccccccccEcccHHHHHcccccHHHHccccccHHHHHcccEEEcHHHHHHHcHHHHHHHHHHHHcccccEEEEccccccHEEEEcccccccccccEEEcccccccccHHHHHHcEEEEEccccccHHHHccHHHHHHHHHHcccccHHHHHcccccc

mtatlntgphqilpftaydhlgflqfcsgsslayeltkpgkitrktrrRSLASRVLFGSFSFAAWEKMQlhispslrhvtvlpgkgvREFIKVKVGSRRLSYRMLFYSLLFLTFLLRFVFVLSAvdtidgeskcstigclgkrlgprilgrrpqstvPEVIYQILeepmskdelkgrsdipqTLEEFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRhvasssipkQLHCLALRLANEHSTNAAARlqlpsaelvpalvdnsYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITdrktyypmqawfslhplspAIIEVKALqhfdwfskgkvpvlEAMEKDQRVRAQfrggssaivannteKPYVIAAKLQALSPKYNSLMNHIRihlpemfpslnkvvfldddlvvqtdlsplwdidmngkvngavatcrgddkfvMSKTLKSYlnfshplisrnfdpnecawaygmnifdLEAWRKTNISQTYHYWLEQNLKSdlslwqlgtlppgliafhghvhvidpfwhmlglgyqentsfadaesagvihfngrakpwldiafpklrplwskyINFSDKFIKSCHIRAS

mtatlntgphqiLPFTAYDHLGFLQFCSGSSLAYEltkpgkitrktrrrslASRVLFGSFSFAAWEKMQLHISpslrhvtvlpgkgvrEFIKVKVGSRRLSYRMLFYSLLFLTFLLRFVFVLSAVDtidgeskcstigclgkrlgprilgrrpqstVPEVIYQIleepmskdelkgrsDIPQTLEEFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSlvknslhpakIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFrggssaivannteKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLsplwdidmngkVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS

MTATLNTGPHQILPFTAYDHLGFLQFCSGSSLAYELTKPGKITRKTRRRSLASRVLFGSFSFAAWEKMQLHISPSLRHVTVLPGKGVREFIKVKVGSRRLSYRMlfysllfltfllrfvfvlsAVDTIDGESKCSTIGCLGKRLGPRILGRRPQSTVPEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS

*********HQILPFTAYDHLGFLQFCSGSSLAYELTKPGKITRKTRRRSLASRVLFGSFSFAAWEKMQLHISPSLRHVTVLPGKGVREFIKVKVGSRRLSYRMLFYSLLFLTFLLRFVFVLSAVDTIDGESKCSTIGCLGKRLGPRILGRRPQSTVPEVIYQIL**********************************TFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAME****VRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHI***

*******GPHQILPFTAYDHLGFLQFCSGSSLAYELTKPG*******RRSLASRVLFGSFSFAAWEKMQLHISPSLRHVTV*********IKVKVGSRRLSYRMLFYSLLFLTFLLRFVFVLSAVDTIDGESKCSTIGCLGKRLGPRIL************************************EFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHS******************VDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHI***

****LNTGPHQILPFTAYDHLGFLQFCSGSSLAYELTKPGKITRKTRRRSLASRVLFGSFSFAAWEKMQLHISPSLRHVTVLPGKGVREFIKVKVGSRRLSYRMLFYSLLFLTFLLRFVFVLSAVDTIDGESKCSTIGCLGKRLGPRILGRRPQSTVPEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGG****************AKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIR**

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		600	2.2.26 [Sep-21-2011]
Q9FH36		535	Probable galacturonosyltr	yes	no	0.888	0.996	0.824	0.0
Q8GWT1		532	Probable galacturonosyltr	no	no	0.88	0.992	0.562	1e-180
Q0WV13		533	Probable galacturonosyltr	no	no	0.881	0.992	0.560	1e-180
Q8L4B0		540	Probable galacturonosyltr	no	no	0.82	0.911	0.421	1e-110
Q93ZX7		616	Probable galacturonosyltr	no	no	0.7	0.681	0.415	3e-99
Q9LE59		673	Polygalacturonate 4-alpha	no	no	0.675	0.601	0.400	1e-96
Q9LSG3		559	Galacturonosyltransferase	no	no	0.656	0.704	0.420	2e-93
Q949Q1		537	Probable galacturonosyltr	no	no	0.681	0.761	0.393	3e-93
Q0WQD2		680	Probable galacturonosyltr	no	no	0.646	0.570	0.408	5e-90
Q9FWA4		561	Probable galacturonosyltr	no	no	0.69	0.737	0.414	3e-86

>sp\|Q9FH36\|GAUTC_ARATH Probable galacturonosyltransferase 12 OS=Arabidopsis thaliana GN=GAUT12 PE=2 SV=1	Back alignment and function desciption

 Score =  909 bits (2348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/535 (82%), Positives = 492/535 (91%), Gaps = 2/535 (0%)

Query: 68  MQLHISPSLRHVTVLPGKGVREFIKVKVGSRRLSYRMLFYSLLFLTFLLRFVFVLSAVDT 127
           MQLHISPSLRHVTV+ GKG+REFIKVKVGSRR SY+M+FYSLLF TFLLRFVFVLS VDT
Sbjct: 1   MQLHISPSLRHVTVVTGKGLREFIKVKVGSRRFSYQMVFYSLLFFTFLLRFVFVLSTVDT 60

Query: 128 IDGE-SKCSTIGCLGKRLGPRILGRRPQS-TVPEVIYQILEEPMSKDELKGRSDIPQTLE 185
           IDG+ S CS++ CLGKRL P++LGRR  S  VPE +YQ+LE+P+S+ ELKGRSDIPQTL+
Sbjct: 61  IDGDPSPCSSLACLGKRLKPKLLGRRVDSGNVPEAMYQVLEQPLSEQELKGRSDIPQTLQ 120

Query: 186 EFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRL 245
           +FM+++K SKSDA+ FA KL++MVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLAL+L
Sbjct: 121 DFMSEVKRSKSDAREFAQKLKEMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALKL 180

Query: 246 ANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVL 305
           ANEHS NAAARLQLP AELVP LVDN+YFH+VLASDN+LA SVVA SLV+N+L P KIVL
Sbjct: 181 ANEHSINAAARLQLPEAELVPMLVDNNYFHFVLASDNILAASVVAKSLVQNALRPHKIVL 240

Query: 306 HIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRG 365
           HIITDRKTY+PMQAWFSLHPLSPAIIEVKAL HFDW SKGKVPVLEAMEKDQRVR+QFRG
Sbjct: 241 HIITDRKTYFPMQAWFSLHPLSPAIIEVKALHHFDWLSKGKVPVLEAMEKDQRVRSQFRG 300

Query: 366 GSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTD 425
           GSS IVANN E P V+AAKLQALSPKYNSLMNHIRIHLPE+FPSLNKVVFLDDD+V+QTD
Sbjct: 301 GSSVIVANNKENPVVVAAKLQALSPKYNSLMNHIRIHLPELFPSLNKVVFLDDDIVIQTD 360

Query: 426 LSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNI 485
           LSPLWDIDMNGKVNGAV TCRG+DKFVMSK  KSYLNFS+P I++NF+P ECAWAYGMN+
Sbjct: 361 LSPLWDIDMNGKVNGAVETCRGEDKFVMSKKFKSYLNFSNPTIAKNFNPEECAWAYGMNV 420

Query: 486 FDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGY 545
           FDL AWR+TNIS TY++WL++NLKSDLSLWQLGTLPPGLIAFHGHV  IDPFWHMLGLGY
Sbjct: 421 FDLAAWRRTNISSTYYHWLDENLKSDLSLWQLGTLPPGLIAFHGHVQTIDPFWHMLGLGY 480

Query: 546 QENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS 600
           QE TS+ADAESA V+HFNGRAKPWLDIAFP LRPLW+KY++ SD+FIKSCHIRAS
Sbjct: 481 QETTSYADAESAAVVHFNGRAKPWLDIAFPHLRPLWAKYLDSSDRFIKSCHIRAS 535

Involved in pectin assembly and/or distribution, and in the synthesis of secondary wall glucuronoxylan. Probably involved in the synthesis of the glycosyl sequence at the glucuronoxylan reducing end. May be involved in synthesis of a complex glycan primer for xylan synthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp\|Q8GWT1\|GAUTE_ARATH Probable galacturonosyltransferase 14 OS=Arabidopsis thaliana GN=GAUT14 PE=2 SV=1	Back alignment and function description

>sp\|Q0WV13\|GAUTD_ARATH Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13 PE=2 SV=1	Back alignment and function description

>sp\|Q8L4B0\|GAUTF_ARATH Probable galacturonosyltransferase 15 OS=Arabidopsis thaliana GN=GAUT15 PE=2 SV=1	Back alignment and function description

>sp\|Q93ZX7\|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1	Back alignment and function description

>sp\|Q9LE59\|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1	Back alignment and function description

>sp\|Q9LSG3\|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1	Back alignment and function description

>sp\|Q949Q1\|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1	Back alignment and function description

>sp\|Q0WQD2\|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2	Back alignment and function description

>sp\|Q9FWA4\|GAUT9_ARATH Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana GN=GAUT9 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		600
356549823		533	PREDICTED: probable galacturonosyltransf	0.888	1.0	0.863	0.0
359493952		533	PREDICTED: probable galacturonosyltransf	0.888	1.0	0.883	0.0
224126287		533	glycosyltransferase, CAZy family GT8 [Po	0.888	1.0	0.866	0.0
449470415		535	PREDICTED: probable galacturonosyltransf	0.888	0.996	0.867	0.0
145408196		533	secondary wall-associated glycosyltransf	0.888	1.0	0.864	0.0
147768261		553	hypothetical protein VITISV_028754 [Viti	0.888	0.963	0.842	0.0
356543946		533	PREDICTED: probable galacturonosyltransf	0.888	1.0	0.864	0.0
357452677		541	Glycosyltransferase CAZy family GT8 [Med	0.888	0.985	0.861	0.0
388502728		541	unknown [Medicago truncatula]	0.888	0.985	0.859	0.0
356514978		558	PREDICTED: probable galacturonosyltransf	0.891	0.958	0.857	0.0

>gi\|356549823\|ref\|XP_003543290.1\| PREDICTED: probable galacturonosyltransferase 12-like [Glycine max]	Back alignment and taxonomy information

 Score =  985 bits (2546), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/533 (86%), Positives = 498/533 (93%)

Query: 68  MQLHISPSLRHVTVLPGKGVREFIKVKVGSRRLSYRMLFYSLLFLTFLLRFVFVLSAVDT 127
           MQLHISPSLRHVTV P KG +EFIKVKV S+R+SYRMLFYSLL  TFLLRFVFVL+AVD 
Sbjct: 1   MQLHISPSLRHVTVFPSKGFKEFIKVKVASKRVSYRMLFYSLLVFTFLLRFVFVLTAVDG 60

Query: 128 IDGESKCSTIGCLGKRLGPRILGRRPQSTVPEVIYQILEEPMSKDELKGRSDIPQTLEEF 187
           IDGE+KC+TIGCLGK+LGPRILGRRP+S+VPEVIYQ L+E + K+EL+GRSDIPQTLEEF
Sbjct: 61  IDGENKCTTIGCLGKKLGPRILGRRPESSVPEVIYQTLDENLGKNELQGRSDIPQTLEEF 120

Query: 188 MADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLAN 247
           M DMK+   DAKTFA+KLR+MVTLMEQRTR AKIQEYLYRHVASSSIPKQLHCL+L LAN
Sbjct: 121 MTDMKKGGYDAKTFAVKLREMVTLMEQRTRMAKIQEYLYRHVASSSIPKQLHCLSLSLAN 180

Query: 248 EHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHI 307
           EH+ NAAARLQLPSAELVPALVDNSYFH+VLASDNVLA SVVATSLV N L P K+VLHI
Sbjct: 181 EHTNNAAARLQLPSAELVPALVDNSYFHFVLASDNVLAASVVATSLVHNFLRPQKVVLHI 240

Query: 308 ITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGS 367
           ITDRKTYYPMQAWFSLH LSPAIIEVKAL HFDWF+KGKVPVLEAMEKDQ+VR+QFRGGS
Sbjct: 241 ITDRKTYYPMQAWFSLHSLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQKVRSQFRGGS 300

Query: 368 SAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLS 427
           SAIVAN TEKP VIAAKLQALSPKYNS+MNHIRIHLPE+FPSLNK+VFLDDD+VVQTDLS
Sbjct: 301 SAIVANTTEKPKVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKLVFLDDDIVVQTDLS 360

Query: 428 PLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFD 487
           PLWDI+MNGKVNGAV TC G+D+FVMSK LKSYLNFSHPLIS NF PNECAWAYGMNIFD
Sbjct: 361 PLWDIEMNGKVNGAVETCSGEDRFVMSKRLKSYLNFSHPLISENFHPNECAWAYGMNIFD 420

Query: 488 LEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQE 547
           LEAWRKTNIS  YHYW+EQN+KSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQE
Sbjct: 421 LEAWRKTNISNVYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQE 480

Query: 548 NTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS 600
           NTSF DAESAGV+HFNGRAKPWL+IAFP+LR LW+KY++FSDKFIKSCHIRAS
Sbjct: 481 NTSFGDAESAGVVHFNGRAKPWLEIAFPQLRKLWTKYVDFSDKFIKSCHIRAS 533

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359493952\|ref\|XP_002282637.2\| PREDICTED: probable galacturonosyltransferase 12-like [Vitis vinifera] gi\|302143207\|emb\|CBI20502.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224126287\|ref\|XP_002319802.1\| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] gi\|222858178\|gb\|EEE95725.1\| glycosyltransferase, CAZy family GT8 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449470415\|ref\|XP_004152912.1\| PREDICTED: probable galacturonosyltransferase 12-like [Cucumis sativus] gi\|449521279\|ref\|XP_004167657.1\| PREDICTED: probable galacturonosyltransferase 12-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|145408196\|gb\|ABP65660.1\| secondary wall-associated glycosyltransferase family 8D [Populus tremula x Populus alba]	Back alignment and taxonomy information

>gi\|147768261\|emb\|CAN78125.1\| hypothetical protein VITISV_028754 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356543946\|ref\|XP_003540419.1\| PREDICTED: probable galacturonosyltransferase 12-like [Glycine max]	Back alignment and taxonomy information

>gi\|357452677\|ref\|XP_003596615.1\| Glycosyltransferase CAZy family GT8 [Medicago truncatula] gi\|355485663\|gb\|AES66866.1\| Glycosyltransferase CAZy family GT8 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|388502728\|gb\|AFK39430.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356514978\|ref\|XP_003526178.1\| PREDICTED: probable galacturonosyltransferase 12-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		600
TAIR\|locus:2157543		535	GAUT12 "galacturonosyltransfer	0.888	0.996	0.792	2.7e-235
TAIR\|locus:2180947		532	GAUT14 "galacturonosyltransfer	0.88	0.992	0.541	2.8e-160
TAIR\|locus:2102082		533	GAUT13 "galacturonosyltransfer	0.88	0.990	0.544	2e-159
TAIR\|locus:2099049		540	GAUT15 "galacturonosyltransfer	0.871	0.968	0.392	7.9e-101
TAIR\|locus:2090210		559	QUA1 "QUASIMODO 1" [Arabidopsi	0.628	0.674	0.430	7.7e-87
TAIR\|locus:2051426		536	GAUT10 "galacturonosyltransfer	0.635	0.710	0.401	4.4e-84
TAIR\|locus:2121753		680	GAUT3 "galacturonosyltransfera	0.653	0.576	0.410	4.4e-84
TAIR\|locus:2074572		561	GAUT9 "galacturonosyltransfera	0.526	0.563	0.463	1.4e-80
TAIR\|locus:2039934		528	GAUT2 "galacturonosyltransfera	0.44	0.5	0.339	2.2e-78
TAIR\|locus:504955915		610	LGT5 "los glycosyltransferase	0.348	0.342	0.4	1.6e-67

TAIR\|locus:2157543 GAUT12 "galacturonosyltransferase 12" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2269 (803.8 bits), Expect = 2.7e-235, P = 2.7e-235
 Identities = 424/535 (79%), Positives = 474/535 (88%)

Query:    68 MQLHISPSLRHVTVLPGKGVREFIKVKVGSRRLSYRMXXXXXXXXXXXXXXXXXXXAVDT 127
             MQLHISPSLRHVTV+ GKG+REFIKVKVGSRR SY+M                    VDT
Sbjct:     1 MQLHISPSLRHVTVVTGKGLREFIKVKVGSRRFSYQMVFYSLLFFTFLLRFVFVLSTVDT 60

Query:   128 IDGE-SKCSTIGCLGKRLGPRILGRRPQS-TVPEVIYQILEEPMSKDELKGRSDIPQTLE 185
             IDG+ S CS++ CLGKRL P++LGRR  S  VPE +YQ+LE+P+S+ ELKGRSDIPQTL+
Sbjct:    61 IDGDPSPCSSLACLGKRLKPKLLGRRVDSGNVPEAMYQVLEQPLSEQELKGRSDIPQTLQ 120

Query:   186 EFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRL 245
             +FM+++K SKSDA+ FA KL++MVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLAL+L
Sbjct:   121 DFMSEVKRSKSDAREFAQKLKEMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALKL 180

Query:   246 ANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVL 305
             ANEHS NAAARLQLP AELVP LVDN+YFH+VLASDN+LA SVVA SLV+N+L P KIVL
Sbjct:   181 ANEHSINAAARLQLPEAELVPMLVDNNYFHFVLASDNILAASVVAKSLVQNALRPHKIVL 240

Query:   306 HIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRG 365
             HIITDRKTY+PMQAWFSLHPLSPAIIEVKAL HFDW SKGKVPVLEAMEKDQRVR+QFRG
Sbjct:   241 HIITDRKTYFPMQAWFSLHPLSPAIIEVKALHHFDWLSKGKVPVLEAMEKDQRVRSQFRG 300

Query:   366 GSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTD 425
             GSS IVANN E P V+AAKLQALSPKYNSLMNHIRIHLPE+FPSLNKVVFLDDD+V+QTD
Sbjct:   301 GSSVIVANNKENPVVVAAKLQALSPKYNSLMNHIRIHLPELFPSLNKVVFLDDDIVIQTD 360

Query:   426 LSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNI 485
             LSPLWDIDMNGKVNGAV TCRG+DKFVMSK  KSYLNFS+P I++NF+P ECAWAYGMN+
Sbjct:   361 LSPLWDIDMNGKVNGAVETCRGEDKFVMSKKFKSYLNFSNPTIAKNFNPEECAWAYGMNV 420

Query:   486 FDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGY 545
             FDL AWR+TNIS TY++WL++NLKSDLSLWQLGTLPPGLIAFHGHV  IDPFWHMLGLGY
Sbjct:   421 FDLAAWRRTNISSTYYHWLDENLKSDLSLWQLGTLPPGLIAFHGHVQTIDPFWHMLGLGY 480

Query:   546 QENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS 600
             QE TS+ADAESA V+HFNGRAKPWLDIAFP LRPLW+KY++ SD+FIKSCHIRAS
Sbjct:   481 QETTSYADAESAAVVHFNGRAKPWLDIAFPHLRPLWAKYLDSSDRFIKSCHIRAS 535

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0016051 "carbohydrate biosynthetic process" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS

GO:0010417 "glucuronoxylan biosynthetic process" evidence=IMP

GO:0045492 "xylan biosynthetic process" evidence=RCA;TAS

GO:0071555 "cell wall organization" evidence=IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA;IMP

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR\|locus:2180947 GAUT14 "galacturonosyltransferase 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2102082 GAUT13 "galacturonosyltransferase 13" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2099049 GAUT15 "galacturonosyltransferase 15" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090210 QUA1 "QUASIMODO 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2051426 GAUT10 "galacturonosyltransferase 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2039934 GAUT2 "galacturonosyltransferase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504955915 LGT5 "los glycosyltransferase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FH36	GAUTC_ARATH	2, ., 4, ., 1, ., -	0.8242	0.8883	0.9962	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00027429001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (533 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036829001	RecName- Full=Pectinesterase; EC=3.1.1.11; (364 aa)	•	0.899
	GSVIVG00036367001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (308 aa)	•	0.899
	GSVIVG00035359001	RecName- Full=Pectinesterase; EC=3.1.1.11; (299 aa)	•	0.899
	GSVIVG00033995001	RecName- Full=Pectinesterase; EC=3.1.1.11; (581 aa)	•	0.899
	GSVIVG00033942001	SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (237 aa)	•	0.899
	GSVIVG00031642001	SubName- Full=Chromosome chr5 scaffold_58, whole genome shotgun sequence; (451 aa)	•	0.899
	GSVIVG00028034001	RecName- Full=Pectinesterase; EC=3.1.1.11; (465 aa)	•	0.899
	GSVIVG00026410001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (418 aa)	•	0.899
	GSVIVG00026388001	RecName- Full=Pectinesterase; EC=3.1.1.11; (513 aa)	•	0.899
	GSVIVG00022688001	RecName- Full=Pectinesterase; EC=3.1.1.11; (477 aa)	•	0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		600
PLN02659		534	PLN02659, PLN02659, Probable galacturonosyltransfe	0.0
PLN02870		533	PLN02870, PLN02870, Probable galacturonosyltransfe	0.0
PLN02867		535	PLN02867, PLN02867, Probable galacturonosyltransfe	1e-170
PLN02742		534	PLN02742, PLN02742, Probable galacturonosyltransfe	1e-136
PLN02829		639	PLN02829, PLN02829, Probable galacturonosyltransfe	1e-135
PLN02523		559	PLN02523, PLN02523, galacturonosyltransferase	1e-131
PLN02910		657	PLN02910, PLN02910, polygalacturonate 4-alpha-gala	1e-118
PLN02718		603	PLN02718, PLN02718, Probable galacturonosyltransfe	2e-97
cd06429		257	cd06429, GT8_like_1, GT8_like_1 represents a subfa	2e-96
PLN02769		629	PLN02769, PLN02769, Probable galacturonosyltransfe	8e-81
pfam01501		248	pfam01501, Glyco_transf_8, Glycosyl transferase fa	2e-64
cd04194		248	cd04194, GT8_A4GalT_like, A4GalT_like proteins cat	7e-21
cd00505		246	cd00505, Glyco_transf_8, Members of glycosyltransf	9e-13
COG1442		325	COG1442, RfaJ, Lipopolysaccharide biosynthesis pro	3e-10
cd06432		248	cd06432, GT8_HUGT1_C_like, The C-terminal domain o	4e-05

>gnl\|CDD\|215356 PLN02659, PLN02659, Probable galacturonosyltransferase	Back alignment and domain information

 Score = 1066 bits (2758), Expect = 0.0
 Identities = 478/534 (89%), Positives = 511/534 (95%), Gaps = 1/534 (0%)

Query: 68  MQLHISPSLRHVTVLPGKGVREFIKVKVGSRRLSYRMLFYSLLFLTFLLRFVFVLSAVDT 127
           MQLHISPSLRHVTVLPGKGVREFIKVKVGSRR+SYRMLFYSLLF TFLLRFVFVLS VDT
Sbjct: 1   MQLHISPSLRHVTVLPGKGVREFIKVKVGSRRVSYRMLFYSLLFFTFLLRFVFVLSTVDT 60

Query: 128 IDGESKCSTIGCLGKRLGPRILGRRPQS-TVPEVIYQILEEPMSKDELKGRSDIPQTLEE 186
           IDGE+KCST+GCLGKRLGPRILGRR  S  VPEV+YQ+LE+P+S DELKGRSDIPQTLEE
Sbjct: 61  IDGETKCSTLGCLGKRLGPRILGRRLDSANVPEVMYQVLEQPLSNDELKGRSDIPQTLEE 120

Query: 187 FMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLA 246
           FM ++K S+SDA+ FA+KLR+MVTL+EQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLA
Sbjct: 121 FMDEVKNSRSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLA 180

Query: 247 NEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLH 306
           NEHSTNAAARLQLP AELVPALVDNSYFH+VLASDN+LA SVVA SLV+N+L P K VLH
Sbjct: 181 NEHSTNAAARLQLPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFVLH 240

Query: 307 IITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGG 366
           IITDRKTY PMQAWFSLHPLSPAIIEVKAL HFDWF+KGKVPVLEAMEKDQRVR+QFRGG
Sbjct: 241 IITDRKTYSPMQAWFSLHPLSPAIIEVKALHHFDWFAKGKVPVLEAMEKDQRVRSQFRGG 300

Query: 367 SSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDL 426
           SSAIVANNTEKP+VIAAKLQALSPKYNS+MNHIRIHLPE+FPSLNKVVFLDDD+VVQTDL
Sbjct: 301 SSAIVANNTEKPHVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDL 360

Query: 427 SPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIF 486
           SPLWDIDMNGKVNGAV TCRG+DKFVMSK LKSYLNFSHPLI++NFDPNECAWAYGMNIF
Sbjct: 361 SPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAYGMNIF 420

Query: 487 DLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQ 546
           DLEAWRKTNIS TYH+WLE+NLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQ
Sbjct: 421 DLEAWRKTNISSTYHHWLEENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQ 480

Query: 547 ENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS 600
           ENTS ADAESAGV+HFNGRAKPWLDIAFP+LRPLW+KYI+ SDKFIKSCHIRAS
Sbjct: 481 ENTSLADAESAGVVHFNGRAKPWLDIAFPQLRPLWAKYIDSSDKFIKSCHIRAS 534

Length = 534

>gnl\|CDD\|215468 PLN02870, PLN02870, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|178458 PLN02867, PLN02867, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215395 PLN02742, PLN02742, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215443 PLN02829, PLN02829, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215286 PLN02523, PLN02523, galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|178320 PLN02718, PLN02718, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>gnl\|CDD\|215412 PLN02769, PLN02769, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8	Back alignment and domain information

>gnl\|CDD\|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>gnl\|CDD\|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>gnl\|CDD\|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|133054 cd06432, GT8_HUGT1_C_like, The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		600
PLN02659		534	Probable galacturonosyltransferase	100.0
PLN02870		533	Probable galacturonosyltransferase	100.0
PLN02867		535	Probable galacturonosyltransferase	100.0
PLN02829		639	Probable galacturonosyltransferase	100.0
PLN02910		657	polygalacturonate 4-alpha-galacturonosyltransferas	100.0
PLN02742		534	Probable galacturonosyltransferase	100.0
PLN02523		559	galacturonosyltransferase	100.0
PLN02769		629	Probable galacturonosyltransferase	100.0
PLN02718		603	Probable galacturonosyltransferase	100.0
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	100.0
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	100.0
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	100.0
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	100.0
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	100.0
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	100.0
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	100.0
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	99.97
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	99.97
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	99.93
PLN00176		333	galactinol synthase	99.92
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	99.74
KOG1879		1470	consensus UDP-glucose:glycoprotein glucosyltransfe	98.97
COG5597		368	Alpha-N-acetylglucosamine transferase [Cell envelo	97.54
PF03407		212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	96.19
PLN03182		429	xyloglucan 6-xylosyltransferase; Provisional	92.7
PF05637		239	Glyco_transf_34: galactosyl transferase GMA12/MNN1	82.72

>PLN02659 Probable galacturonosyltransferase	Back alignment and domain information

Probab=100.00  E-value=1.4e-156  Score=1262.35  Aligned_cols=533  Identities=90%  Similarity=1.409  Sum_probs=507.6

Q ss_pred             ceeeeccccceEEeeCCCcccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCCc
Q 007529           68 MQLHISPSLRHVTVLPGKGVREFIKVKVGSRRLSYRMLFYSLLFLTFLLRFVFVLSAVDTIDGESKCSTIGCLGKRLGPR  147 (600)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (600)
                      |||||||||||||||+|+|+.|+||+|||+|++||||+|||+|+|||||||+|||+|++||||.++|||+||+|+|+||+
T Consensus         1 mq~~~sp~~r~~t~~~~~~~~~~~~~~~~~~~~~~r~~f~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (534)
T PLN02659          1 MQLHISPSLRHVTVLPGKGVREFIKVKVGSRRVSYRMLFYSLLFFTFLLRFVFVLSTVDTIDGETKCSTLGCLGKRLGPR   80 (534)
T ss_pred             CceeecCccceEEEccCccHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhhhheeehhcccccccccccccccccccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCC-chHHHHHHHhccCccccccCCCCchhhHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007529          148 ILGRRPQST-VPEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLY  226 (600)
Q Consensus       148 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~ee~~~~~~~~~~~~  226 (600)
                      ++||+++++ ++||++|+|.||++.+|++++.++|+++++++.+|+..+|||+++++|||||++++|||++++|+|+++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~klr~~l~~~E~~~~~~k~~~~~~  160 (534)
T PLN02659         81 ILGRRLDSANVPEVMYQVLEQPLSNDELKGRSDIPQTLEEFMDEVKNSRSDARAFALKLREMVTLLEQRTRTAKIQEYLY  160 (534)
T ss_pred             cccCCCcccccHHHHHHHHHhhhcccccCCccccchHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccccchhhhhHHHHhhchHhhhcCCCcccccccCCCCcceEEEecCCccchhHHHHHhhhcCCCCCcEEEE
Q 007529          227 RHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLH  306 (600)
Q Consensus       227 ~~la~~~~Pk~lhcL~~rlt~ey~~~~~~~~~~~~~~~~~~l~d~~~iHIa~~sDnvLa~sVvI~Sil~Ns~~p~~i~FH  306 (600)
                      .||||+|+|||||||+||||+|||+++++++++|++|..|+++||+++|+|++|||+||+||||||++.|+++|+++|||
T Consensus       161 ~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvnStv~~a~~p~~~VFH  240 (534)
T PLN02659        161 RHVASSSIPKQLHCLALRLANEHSTNAAARLQLPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFVLH  240 (534)
T ss_pred             HHHHhhhCCCCccccchhhHHHHHhCchhhhccCCcccccccCCCCcceEEEEecceeEEEeeeehhhhcccCccceEEE
Confidence            99999999999999999999999999999999999998999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCchhhhhhhhcCCCCcceeeeeecccccccccCCchhhhhhhccceeeeeecCCCcccccCCCCchhHHHHhhh
Q 007529          307 IITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQ  386 (600)
Q Consensus       307 IvtD~i~~~~m~~wf~ln~~~~a~vev~nie~F~~l~~~~~pvl~~le~~~~i~~~f~~~~~~~~~~~~~~p~~~~~~lk  386 (600)
                      ||||++|+.+|++||.+|++++|+|||+|||+|+||+.+++||++|+++...++.+|+.+.......+.++|+....++|
T Consensus       241 ivTD~~ny~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pvl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  320 (534)
T PLN02659        241 IITDRKTYSPMQAWFSLHPLSPAIIEVKALHHFDWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAAKLQ  320 (534)
T ss_pred             EecCccccHHHHHHHhhCCCccceEEEEeehhcccccccccHHHHHHhhhhhhhhhhcccccccccccccCccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999987654434445567776677899


Q ss_pred             ccCCCCCchhhHHHhhcccccCCCCeEEEEecCeeeecCCchhhccCCCCCeeEEEeccCCCCcccchhhhhhhccCCCc
Q 007529          387 ALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHP  466 (600)
Q Consensus       387 ~~~~~y~S~~~y~Rf~LPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAV~D~~~~~~~~~~~~~~~ylnfs~p  466 (600)
                      +++|+|+|+++|+||+||++||+++||||||+||||++||++||++||+|+++|||+||...+.++..+++++|+++++|
T Consensus       321 ~~~p~ylS~~nY~RL~IPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p  400 (534)
T PLN02659        321 ALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHP  400 (534)
T ss_pred             cCCccceeHHHHHHHHHHHHhhhcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccch
Confidence            99999999999999999999999999999999999999999999999999999999999653222234678889999999


Q ss_pred             ccccCCCCCCCccccceeeeehHHHHhhhHHHHHHHHHHHhccCCCCCCCcCCCchhhhhcCCcEEEcCCccceeccCCC
Q 007529          467 LISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQ  546 (600)
Q Consensus       467 ~I~~~f~~~~~yfNSGVlLiDL~kWRk~nit~k~~~~l~~~~~~~~~~~DQd~LN~~ll~F~g~i~~Lp~~WN~~glgy~  546 (600)
                      .+...|+++.||||+|||||||++||++++++++++|++++.+.++.+||||+|||+|++|+|++++||.+||+.++||+
T Consensus       401 ~i~~yFn~~~cYfNsGVlLINLk~WRe~nITek~l~~l~~n~~~~l~l~DQdaLp~~LivF~g~v~~LD~rWN~~gLg~~  480 (534)
T PLN02659        401 LIAKNFDPNECAWAYGMNIFDLEAWRKTNISSTYHHWLEENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQ  480 (534)
T ss_pred             hhhhccCccccceecceeEeeHHHHHhcChHHHHHHHHHhcccccccccccccchHHHHHhcCCEEECChhheecCCccc
Confidence            99889999999999999999999999999999999999987655689999999999999999999999999999999998


Q ss_pred             CCcccccCCCCeEEEeeCCCCCCCCCCCCCCHHHHHHHHhcchhhhhhccCCCC
Q 007529          547 ENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS  600 (600)
Q Consensus       547 ~~~~~e~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~s~~fl~~Cni~~~  600 (600)
                      .+...+.+++|+||||+|++|||+++++++|+++|.+|++++++|||+|||+|+
T Consensus       481 ~~~~~~~i~~paIIHYnG~~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~~~  534 (534)
T PLN02659        481 ENTSLADAESAGVVHFNGRAKPWLDIAFPQLRPLWAKYIDSSDKFIKSCHIRAS  534 (534)
T ss_pred             ccccccccCCcEEEEECCCCCccccccCCcchhHHHHHhccCCHHHHhcCCCCC
Confidence            766667789999999999999999999999999999999999999999999985

>PLN02870 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02867 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02829 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>PLN02742 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02523 galacturonosyltransferase	Back alignment and domain information

>PLN02769 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02718 Probable galacturonosyltransferase	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>PLN00176 galactinol synthase	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []	Back alignment and domain information

>PLN03182 xyloglucan 6-xylosyltransferase; Provisional	Back alignment and domain information

>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		600
1ss9_A		311	Crystal Structural Analysis Of Active Site Mutant Q		1e-05
1g9r_A		311	Crystal Structure Of Galactosyltransferase Lgtc In		5e-05

>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc Length = 311

Back alignment and structure

Iteration: 1

Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 33/197 (16%) Query: 388 LSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRG 447 L+ ++ S+ + R+ L E +KV++LD D++V+ L+PLWD D+ GA Sbjct: 74 LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACI---- 129 Query: 448 DDKFV-MSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQ 506 D FV + K + + E + G+ + +L+ WR+ +I + W+EQ Sbjct: 130 -DLFVERQEGYKQKIGMA---------DGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQ 179 Query: 507 NLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQ-ENTSFADAES--------- 556 D+ +Q + GL F G V + ++ + Y FA + Sbjct: 180 --YKDVMQYQDEDILNGL--FKGGVCYANSRFNFMPTNYAFMANRFASRHTDPLYRDRTN 235 Query: 557 ----AGVIHFNGRAKPW 569 V H+ G AKPW Sbjct: 236 TVMPVAVSHYCGPAKPW 252

PyMOL of 1ss9

>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose Length = 311

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		600
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	1e-49
3tzt_A		276	Glycosyl transferase family 8; structural genomics	7e-26
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311	Back alignment and structure

 Score =  173 bits (441), Expect = 1e-49
 Identities = 55/333 (16%), Positives = 107/333 (32%), Gaps = 76/333 (22%)

Query: 275 HYVLASDN--VLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIE 332
             V A+D+       V A S+        +I  H++                 +S     
Sbjct: 2   DIVFAADDNYAAYLCVAAKSVEAAH-PDTEIRFHVLDAG--------------ISE---- 42

Query: 333 VKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKY 392
                     +      + A  +      +F       V       +        L+ ++
Sbjct: 43  -------ANRAA-----VAANLRGGGGNIRFI-----DVNPEDFAGF-------PLNIRH 78

Query: 393 NSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFV 452
            S+  + R+ L E     +KV++LD D++V+  L+PLWD D+     GA      D    
Sbjct: 79  ISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASI----DLFVE 134

Query: 453 MSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDL 512
             +  K  +  +           E  +  G+ + +L+ WR+ +I +    W+EQ    D+
Sbjct: 135 RQEGYKQKIGMADG---------EYYFNAGVLLINLKKWRRHDIFKMSSEWVEQY--KDV 183

Query: 513 SLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADA--------------ESAG 558
             +Q   +      F G V   +  ++ +   Y    ++  +                  
Sbjct: 184 MQYQDQDILN--GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVA 241

Query: 559 VIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKF 591
           V H+ G AKPW           +++        
Sbjct: 242 VSHYCGPAKPWHRDCTAWGAERFTELAGSLTTV 274

PyMOL of 1g9r

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		600
3tzt_A		276	Glycosyl transferase family 8; structural genomics	100.0
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	100.0
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	99.93
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	99.91

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

Probab=100.00  E-value=5.2e-46  Score=380.32  Aligned_cols=258  Identities=16%  Similarity=0.212  Sum_probs=181.9

Q ss_pred             cceEEEecCC-c-cchhHHHHHhhhcCCCCCcEEEEEEeCCCCchhhhhhhhcCCCCcceeeeeecccccccccCCchhh
Q 007529          273 YFHYVLASDN-V-LATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVL  350 (600)
Q Consensus       273 ~iHIa~~sDn-v-La~sVvI~Sil~Ns~~p~~i~FHIvtD~i~~~~m~~wf~ln~~~~a~vev~nie~F~~l~~~~~pvl  350 (600)
                      .||||+++|+ + .+++|+|+|++.|+++ ++++|||++++++.+..+.....-.-.+..|++..+.+            
T Consensus         5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~------------   71 (276)
T 3tzt_A            5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD------------   71 (276)
T ss_dssp             CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred             eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH------------
Confidence            5899999996 5 4589999999999986 67999999999987764332211000112222211100            


Q ss_pred             hhhhccceeeeeecCCCcccccCCCCchhHHHHhhhccCCCCCchhhHHHhhcccccC-CCCeEEEEecCeeeecCCchh
Q 007529          351 EAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFP-SLNKVVFLDDDLVVQTDLSPL  429 (600)
Q Consensus       351 ~~le~~~~i~~~f~~~~~~~~~~~~~~p~~~~~~lk~~~~~y~S~~~y~Rf~LPeLLP-~ldKVLYLD~DvVV~~DLseL  429 (600)
                                     +              ....++  ..+++|..+|+||++|+++| +++||||||+|+||++||++|
T Consensus        72 ---------------~--------------~~~~~~--~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L  120 (276)
T 3tzt_A           72 ---------------D--------------LFSFAK--VTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDL  120 (276)
T ss_dssp             -------------------------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHH
T ss_pred             ---------------H--------------HHhcCc--cccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHH
Confidence                           0              000111  12467999999999999999 699999999999999999999


Q ss_pred             hccCCCCCeeEEEeccCCCCcccchhhhhhhccCCCcccccCCCCCCCccccceeeeehHHHHhhhHHHHHHHHHHHhcc
Q 007529          430 WDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLK  509 (600)
Q Consensus       430 w~iDL~gkviaAV~D~~~~~~~~~~~~~~~ylnfs~p~I~~~f~~~~~yfNSGVlLiDL~kWRk~nit~k~~~~l~~~~~  509 (600)
                      |++|++|+++|||+||....       ..+..+      ..+++...+|||||||||||++||+.++++++++|++++. 
T Consensus       121 ~~~dl~~~~~aav~d~~~~~-------~~~~~~------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~-  186 (276)
T 3tzt_A          121 LRTDISDYILAAASHTGKTD-------MANNVN------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNH-  186 (276)
T ss_dssp             HTCCCTTSSEEEEEC---------------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC--
T ss_pred             hhcCCCCCeEEEEEecccch-------HHHHHH------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcc-
Confidence            99999999999999997531       111111      1124444699999999999999999999999999999875 


Q ss_pred             CCCCCCCcCCCchhhhhcCCcEEEcCC-ccceeccCCCC--------Cccc-ccCCCCeEEEeeCCCCCCCCCCCCCCHH
Q 007529          510 SDLSLWQLGTLPPGLIAFHGHVHVIDP-FWHMLGLGYQE--------NTSF-ADAESAGVIHFNGRAKPWLDIAFPKLRP  579 (600)
Q Consensus       510 ~~~~~~DQd~LN~~ll~F~g~i~~Lp~-~WN~~glgy~~--------~~~~-e~i~~~~IIHY~G~~KPW~~~~~~~y~~  579 (600)
                      ..+.++|||+||   .+|.++++.||. +||+++. +..        ..+. +..++|+||||+|..|||+..+.++|++
T Consensus       187 ~~~~~~DQd~LN---~~f~~~~~~Lp~~~wN~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~  262 (276)
T 3tzt_A          187 MNLLLPDQDILN---AMYGDRIYPLDDLIYNYDAR-NYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTS  262 (276)
T ss_dssp             -------CHHHH---HHHGGGEEEEEHHHHSEETT-CHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHH
T ss_pred             ccccCCChhHHH---HHHhCCEEECCchheeeecc-cchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHH
Confidence            356789999997   889999999999 9999862 210        1111 2457899999999999999999999999


Q ss_pred             HHHHHHhcchhhh
Q 007529          580 LWSKYINFSDKFI  592 (600)
Q Consensus       580 lW~kYl~~s~~fl  592 (600)
                      +||+|++..+++|
T Consensus       263 ~w~~Y~~~~~~~~  275 (276)
T 3tzt_A          263 LYKHYMSLTKRYL  275 (276)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999887

PyMOL of 3tzt

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		600
d1ga8a_		282	c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri	2e-25
d1ll2a_		263	c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun	2e-04

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score =  104 bits (259), Expect = 2e-25
 Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 31/217 (14%)

Query: 384 KLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVA 443
               L+ ++ S+  + R+ L E     +KV++LD D++V+  L+PLWD D+     GA  
Sbjct: 70  AGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASI 129

Query: 444 TCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYW 503
               D      +  K  +  +      N          G+ + +L+ WR+ +I +    W
Sbjct: 130 ----DLFVERQEGYKQKIGMADGEYYFN---------AGVLLINLKKWRRHDIFKMSSEW 176

Query: 504 LEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFA----------- 552
           +EQ  K  +       L      F G V   +  ++ +   Y    ++            
Sbjct: 177 VEQY-KDVMQYQDQDILN---GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRD 232

Query: 553 ---DAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYIN 586
                    V H+ G AKPW           +++   
Sbjct: 233 RTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAG 269

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		600
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	100.0
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	99.92
d1o7qa_		287	alpha-1,3-galactosyltransferase catalytic domain {	89.85

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=5.6e-43  Score=352.56  Aligned_cols=254  Identities=20%  Similarity=0.268  Sum_probs=193.1

Q ss_pred             ceEEEecCC-c-cchhHHHHHhhhcCCCCCcEEEEEEeCCCCchhhhhhhhcCCCCcceeeeeecccccccccCCchhhh
Q 007529          274 FHYVLASDN-V-LATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLE  351 (600)
Q Consensus       274 iHIa~~sDn-v-La~sVvI~Sil~Ns~~p~~i~FHIvtD~i~~~~m~~wf~ln~~~~a~vev~nie~F~~l~~~~~pvl~  351 (600)
                      ||||+++|+ + .+++|+|+|+++|+++ .+++|||++++++.+..+.....-...+..+++..+++             
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~-------------   66 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNP-------------   66 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCG-------------
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCc-------------
Confidence            699999996 5 4589999999998876 67999999999998765432221110111111111100             


Q ss_pred             hhhccceeeeeecCCCcccccCCCCchhHHHHhhhccCCCCCchhhHHHhhcccccCCCCeEEEEecCeeeecCCchhhc
Q 007529          352 AMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWD  431 (600)
Q Consensus       352 ~le~~~~i~~~f~~~~~~~~~~~~~~p~~~~~~lk~~~~~y~S~~~y~Rf~LPeLLP~ldKVLYLD~DvVV~~DLseLw~  431 (600)
                                                 .. ....+ ...+++|.++|+||++|++||+++||||||+|+||++||++||+
T Consensus        67 ---------------------------~~-~~~~~-~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~  117 (282)
T d1ga8a_          67 ---------------------------ED-FAGFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWD  117 (282)
T ss_dssp             ---------------------------GG-GTTSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHT
T ss_pred             ---------------------------hH-hcccc-ccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHh
Confidence                                       00 00001 13457899999999999999999999999999999999999999


Q ss_pred             cCCCCCeeEEEeccCCCCcccchhhhhhhccCCCcccccCCCCCCCccccceeeeehHHHHhhhHHHHHHHHHHHhccCC
Q 007529          432 IDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSD  511 (600)
Q Consensus       432 iDL~gkviaAV~D~~~~~~~~~~~~~~~ylnfs~p~I~~~f~~~~~yfNSGVlLiDL~kWRk~nit~k~~~~l~~~~~~~  511 (600)
                      +|++++.+|||.|+....    ...+.+.+         ++....+||||||||+|+++||+++++++++++++++. ..
T Consensus       118 ~~~~~~~~aa~~d~~~~~----~~~~~~~~---------~~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~-~~  183 (282)
T d1ga8a_         118 TDLGDNWLGASIDLFVER----QEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYK-DV  183 (282)
T ss_dssp             CCCTTCSEEEEECHHHHT----STTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHT-TT
T ss_pred             cccccceeeeehhhhhhh----hhhhHHHh---------CCCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcc-cC
Confidence            999999999999975321    11222233         24556899999999999999999999999999999875 35


Q ss_pred             CCCCCcCCCchhhhhcCCcEEEcCCccceeccCCCCCc--------------ccccCCCCeEEEeeCCCCCCCCCCCCCC
Q 007529          512 LSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENT--------------SFADAESAGVIHFNGRAKPWLDIAFPKL  577 (600)
Q Consensus       512 ~~~~DQd~LN~~ll~F~g~i~~Lp~~WN~~glgy~~~~--------------~~e~i~~~~IIHY~G~~KPW~~~~~~~y  577 (600)
                      ..++|||+||   .+|.|++..||.+||++..+|....              ..+...+++||||+|+.|||+..+.+++
T Consensus       184 ~~~~DQd~LN---~~f~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~~~  260 (282)
T d1ga8a_         184 MQYQDQDILN---GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWG  260 (282)
T ss_dssp             CSSTHHHHHH---HHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCSTT
T ss_pred             cccCchhHHH---HHhcCCEEeCCHHHeeccccccccccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCChh
Confidence            7889999997   7899999999999999854321100              0134578999999999999999988899


Q ss_pred             HHHHHHHHhc
Q 007529          578 RPLWSKYINF  587 (600)
Q Consensus       578 ~~lW~kYl~~  587 (600)
                      ++.|++|...
T Consensus       261 ~~~~~~~~~~  270 (282)
T d1ga8a_         261 AERFTELAGS  270 (282)
T ss_dssp             THHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999999754

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure