Citrus Sinensis ID: 007551

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------60
Protein Sequence
MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDEDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKNKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSEKDPKIPDQPVDGKGTKKDRKAKLKNSSKGNKTKTASKNSSNVCEKCGQEFETRNKLHKHLGDTGHASLKFR
Secondary Structure (PSIPRED)
ccccccccHHHccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHccHHHHHHHHcccccccccccHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcHHHHHcccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccccccccHHccccccccccccccccccccccccccccccccccHcccccHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccEEcccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccHcccccccHHHHHHHHHHccccEEccc
Coil and Loop (DISEMBL)
MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEvlsdpkerawydshrsqilfsdlnsasncgpvpnlysyfsntafsgysdsgkgFYKVYSDLFNKIYSVEVSYVKKLGlgldvlreapimgnlespygqvTAFYNYWLGFStvmdfcwvdeydvmagpnrksrrVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEKERKKRLEKERMERAKryeepawariddegdnevgneegleeEEIEKKRSEFYCvlcgkkfksekqwtnheqskKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERfkdnvgveereigsgvgglsgdedveseffdvadgvevnevddrfgkededededaDDEVNMLKAMLSGhknrkrvavrkedevlKTEAHveneigesefmeydnckstrrknkkdrgkksggeaakgdrdgfkstneeanghhnsgvieessshscvgnknngisdnhsekdpkipdqpvdgkgtkkdrkaklknsskgnktktasknssnVCEKCGQEFETRNKLHkhlgdtghaslkfr
Flexible Loop (DISEMBL)
masekrclyevlglrkecttDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDvmagpnrksrrvmeeenkklrkkakreynetvrelaafvkkrdkrvMDMMvkkneeierkreeekerkkrlekermerakryeepawariddegdnevgneegleeeeiekkrSEFYCVLCGKKfksekqwtnheqskkhkekvaDLRESFVDEDEVMADFGELDGEVEELGerfkdnvgveereigsgvgglsgdeDVESEFfdvadgvevnevddrfgkededededadDEVNMLKAmlsghknrkrvavrkedevlkteahveneigesefmeydnckstrrknkkdrgkksggeaakgdrdgfkstneeanGHHNSGVIEESSSHSCVGNKNNgisdnhsekdpkipdqpvdgkgtkkdrkaklknsskgnktktasknssnvcEKCGQEFETRnklhkhlgdtghaslkfr
Low Complexity Region (SEG)
MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVkkneeierkreeekerkkrlekermerakrYEEPAWARiddegdnevgneegleeeeieKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFgeldgeveelgeRFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKededededaddeVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKNKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSEKDPKIPDQPVDGKGTKKDRKAKLKNSSKGNKTKTASKNSSNVCEKCGQEFETRNKLHKHLGDTGHASLKFR
Disordered region (IsUnstruct)
******CLYEVLGLRKECTTDEIRSAYKKLALQR**************ATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVM****************************************************************************************************************EFYCVLCGKKF*****************************************************************************FFDVA*****************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
***EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQS****AEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL**********GPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVS******************GNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAG**RK********************NETVRELAAFVKKRDKRVMD******************************************************************EFYCVLCGKKFKSEKQWT**E***K**EKVADLRESFV******************************************************************************************************************************************************************************************************************************************VCEKCGQEFETRNKLHKHLGDTGH******
Disordered Region (DISEMBL)
MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEI**************EKERMERAKRYEEPAWARIDDEGDN*************EKKRSEFYCVLCGKKFKS*****************ADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDR*************DEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNC************************DGFKSTNEEANGHHN*************GNKNNGISDNHSEKDPKIPDQP***********************************KCGQEFETRNKLHKHLGDTGHASLKFR
Disordered Region (DISPRO)
****KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEKE********RMERAKRYEEPAWARIDDEGDN**************KKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADF********************************************************************ADDEVNMLKAMLS***********************************************************************************************************************************************NVCEKCGQEFETRNKLHKHLGDTGH******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRDKRVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDEDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKNKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSEKDPKIPDQPVDGKGTKKDRKAKLKNSSKGNKTKTASKNSSNVCEKCGQEFETRNKLHKHLGDTGHASLKFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	599	2.2.26 [Sep-21-2011]
Q0II91	533	DnaJ homolog subfamily C	yes	no	0.535	0.602	0.373	1e-56
Q6PGY5	545	DnaJ homolog subfamily C	yes	no	0.545	0.6	0.370	1e-56
Q5F1R6	531	DnaJ homolog subfamily C	yes	no	0.525	0.593	0.381	1e-54
P53863	590	J protein JJJ1 OS=Sacchar	yes	no	0.519	0.527	0.307	9e-38
O14213	380	Meiotically up-regulated	yes	no	0.470	0.742	0.258	4e-16
Q7TQ20	621	DnaJ homolog subfamily C	yes	no	0.410	0.396	0.280	1e-13
Q6NWJ4	618	DnaJ homolog subfamily C	no	no	0.362	0.351	0.270	4e-13
Q1RMH9	621	DnaJ homolog subfamily C	no	no	0.308	0.297	0.273	2e-12
P54103	621	DnaJ homolog subfamily C	no	no	0.308	0.297	0.268	8e-12
Q4R8H2	621	DnaJ homolog subfamily C	N/A	no	0.308	0.297	0.268	9e-12

>sp|Q0II91|DJC21_BOVIN DnaJ homolog subfamily C member 21 OS=Bos taurus GN=DNAJC21 PE=2 SV=2

 Score =  221 bits (563), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 208/364 (57%), Gaps = 43/364 (11%)

Query: 6   RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
           +C YE LG+R++ + +E++ AY+KLAL+ HPDK + +    AEA  QF+ +  AY+VLSD
Sbjct: 2   KCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNA---AEAAEQFKLIQAAYDVLSD 58

Query: 66  PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNK 125
           P+ERAWYD+HR  +L   L+       + +L  YF+ T +SGY D  KGFY VY ++F  
Sbjct: 59  PQERAWYDNHREALLKGGLDGEYQDDSL-DLLHYFTVTCYSGYGDDEKGFYTVYRNVFEM 117

Query: 126 IYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYDV 184
           I   E+    +  L  D + + P  G+ +S Y  V   FY YW  F T  +F W +EYD 
Sbjct: 118 IAKEEL----ESALEED-MEDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKEEYDT 172

Query: 185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVM---DMMVKKNEEIE 241
               NR  +R ME+ENKK+R KA++E NE VR+L AF++KRD+RV     ++ ++N E  
Sbjct: 173 RQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDRRVQAHRKLVEEQNAEKA 232

Query: 242 RKREEEKERKKRLEKERMERAKRYEEPAWARIDD----------EGDNEVGNEEGLEEEE 291
           RK E  + R+++L++ ++  A++Y E +W  + D          + + + G+  G +E E
Sbjct: 233 RKAEAMR-RQQKLKQAKL--AEQYREQSWMAVADLEKELREMEAQYEKQFGDGSGEDEAE 289

Query: 292 IEKKR-----------------SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 334
            ++ R                    YC  C K FK+EK   NHE+SKKH+E VA L++  
Sbjct: 290 DQELRDGQDGKDSDEAEDAELYDGLYCPACDKSFKTEKAMRNHEKSKKHREMVALLKQQL 349

Query: 335 VDED 338
            +E+
Sbjct: 350 EEEE 353

May act as a co-chaperone for HSP70.
Bos taurus (taxid: 9913)

>sp|Q6PGY5|DJC21_DANRE DnaJ homolog subfamily C member 21 OS=Danio rerio GN=dnajc21 PE=2 SV=1

 Score =  221 bits (563), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 139/375 (37%), Positives = 205/375 (54%), Gaps = 48/375 (12%)

Query: 6   RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAE-ATAQFQELVHAYEVLS 64
           +C YEVLG++++ + D+++ AY+KLAL+ HPDK     L  AE A  QF+ +  AY+VLS
Sbjct: 2   KCHYEVLGVKRDASDDDLKKAYRKLALKWHPDK----NLDNAEDAAEQFKLIQAAYDVLS 57

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFN 124
           DP+ERAWYD+HR  +L   ++       + +L  +F+ T +SGY D  KGFY VY ++F 
Sbjct: 58  DPQERAWYDNHREALLKGGVSGEYQDDSI-DLVQFFTVTCYSGYGDDEKGFYAVYRNVFE 116

Query: 125 KIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYD 183
            I   E  + K      D     P  G  ES Y  V   FY YW  F T  +F W +EYD
Sbjct: 117 SIVKEEKEHSKDEEDEEDEF---PSFGESESDYDTVVHLFYGYWQSFCTRKNFAWKEEYD 173

Query: 184 VMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDM--MVKKNEEIE 241
                NR  +R ME+ENKK R KA++E+NE VR+L AFV+KRDKRV     +V++    +
Sbjct: 174 TRQASNRWEKRAMEKENKKTRDKARKEHNELVRQLVAFVRKRDKRVQAHKKLVEEQNAEK 233

Query: 242 RKREEEKERKKRLEKERMERAKRYEEPAWARID------------------DEGDN---- 279
            K+ EE  RK++L + ++  A+ Y+E +W  +                   D  D+    
Sbjct: 234 AKKVEELRRKQKLSQAKL--AEDYQEQSWTAMSELEKELQQMEAEYGQEFGDASDSEENE 291

Query: 280 ------EVGNEEGLE------EEEIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKV 327
                 ++ N +G++        E++    + YC  C K FKS+K   NH +SKKH+E V
Sbjct: 292 EELESRDIANVDGVDAVMADGAAEMDDYYDDLYCPACDKSFKSDKAMKNHSKSKKHREMV 351

Query: 328 ADLRESFVDEDEVMA 342
           A LR+   +EDE ++
Sbjct: 352 ALLRQQLEEEDESLS 366

May act as a co-chaperone for HSP70.

Danio rerio (taxid: 7955)

>sp|Q5F1R6|DJC21_HUMAN DnaJ homolog subfamily C member 21 OS=Homo sapiens GN=DNAJC21 PE=1 SV=2

 Score =  214 bits (546), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/362 (38%), Positives = 205/362 (56%), Gaps = 47/362 (12%)

Query: 6   RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
           +C YE LG+R++ + +E++ AY+KLAL+ HPDK + +    AEA  QF+ +  AY+VLSD
Sbjct: 2   KCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNA---AEAAEQFKLIQAAYDVLSD 58

Query: 66  PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNK 125
           P+ERAWYD+HR  +L    +       + +L  YF+ T +SGY D  KGFY VY ++F  
Sbjct: 59  PQERAWYDNHREALLKGGFDGEYQDDSL-DLLRYFTVTCYSGYGDDEKGFYTVYRNVFEM 117

Query: 126 IYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYDV 184
           I   E+  V +  +      + P  G+ +S Y  V   FY YW  F T  +F W +EYD 
Sbjct: 118 IAKEELESVLEEEVD-----DFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKEEYDT 172

Query: 185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVM---DMMVKKNEEIE 241
               NR  +R ME+ENKK+R KA++E NE VR+L AF++KRDKRV     ++ ++N E  
Sbjct: 173 RQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDKRVQAHRKLVEEQNAEKA 232

Query: 242 RKREEEKERKKRLEKERMERAKRYEEPAW--------------ARIDDE-GDNEVGNEEG 286
           RK EE + R+++L++ ++   ++Y E +W              AR + E GD    NE  
Sbjct: 233 RKAEEMR-RQQKLKQAKL--VEQYREQSWMTMANLEKELQEMEARYEKEFGDGSDENE-- 287

Query: 287 LEEEEIEKKR--------------SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332
           +EE E++ +                + YC  C K FK+EK   NHE+SKKH+E VA L++
Sbjct: 288 MEEHELKDEEDGKDSDEAEDAELYDDLYCPACDKSFKTEKAMKNHEKSKKHREMVALLKQ 347

Query: 333 SF 334
             
Sbjct: 348 QL 349

May act as a co-chaperone for HSP70.

Homo sapiens (taxid: 9606)

>sp|P53863|JJJ1_YEAST J protein JJJ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=JJJ1 PE=1 SV=1

 Score =  159 bits (401), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 183/377 (48%), Gaps = 66/377 (17%)

Query: 5   KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
           K C YE+LG+    +  E++ AY+K ALQ HPDK   +  +  EAT +F  +  AYEVLS
Sbjct: 2   KTCYYELLGVETHASDLELKKAYRKKALQYHPDK---NPDNVEEATQKFAVIRAAYEVLS 58

Query: 65  DPKERAWYDSHRSQIL---------FSDLNSASNCGPVPN--LYSYFSNTAFSGYSDSGK 113
           DP+ERAWYDSH+ QIL         + D    +    V    L  +F++  ++   +S  
Sbjct: 59  DPQERAWYDSHKEQILNDTPPSTDDYYDYEVDATVTGVTTDELLLFFNSALYTKIDNSAA 118

Query: 114 GFYKVYSDLFNKIYSVEVSYVKKLG----LGLDVLRE----------------------A 147
           G Y++   +F K+   E+   K+LG       DV  +                       
Sbjct: 119 GIYQIAGKIFAKLAKDEILSGKRLGKFSEYQDDVFEQDINSIGYLKACDNFINKTDKLLY 178

Query: 148 PIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKA 207
           P+ G   + Y  +  FY  W  F+T+  F W DEY      +R+++R +   N+K R++A
Sbjct: 179 PLFGYSPTDYEYLKHFYKTWSAFNTLKSFSWKDEYMYSKNYDRRTKREVNRRNEKARQQA 238

Query: 208 KREYNETVRELAAFVKKRDKRVMDMMVKKNEEI--ERKREEEKERKKRL----------- 254
           + EYN+TV+    F+KK DKR     +K+  +I  E+++ +E++RK  L           
Sbjct: 239 RNEYNKTVKRFVVFIKKLDKR-----MKEGAKIAEEQRKLKEQQRKNELNNRRKFGNDNN 293

Query: 255 --EKERMERAKRYEEPAWARIDDEGDN--EVGNEEGLEEEEIEKKRSEFYCVLCGKKFKS 310
             EK  ++  +  +E  W  ++   DN  E  N +  +E E+      + C +C K FKS
Sbjct: 294 DEEKFHLQSWQTVKEENWDELEKVYDNFGEFENSKNDKEGEV----LIYECFICNKTFKS 349

Query: 311 EKQWTNHEQSKKHKEKV 327
           EKQ  NH  +K HK+ +
Sbjct: 350 EKQLKNHINTKLHKKNM 366

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O14213|MU185_SCHPO Meiotically up-regulated gene 185 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug185 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 145/325 (44%), Gaps = 43/325 (13%)

Query: 9   YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
           YE+L +  +    EI++ Y+KLALQ HPD+    G+        F ++  AY +LS+  +
Sbjct: 11  YEILQVNHDSDLQEIKANYRKLALQYHPDR--NPGIEDYNEI--FSQINAAYNILSNDDK 66

Query: 69  RAWY--DSHRSQ--ILFSD-LNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF 123
           R W+  D  R+Q  +   D L        +P    + S +AF           ++  D  
Sbjct: 67  RKWHEKDYLRNQYSVQIEDVLQHLQTIEKIP----FESTSAFVE---------RLRQD-- 111

Query: 124 NKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYD 183
                      +K+    D L   P +G+    +      Y  WL FST   F W   Y+
Sbjct: 112 -----------EKIAGSTDDL---PTLGDTTWLWTYAKPIYQKWLRFSTKKSFEWEALYN 157

Query: 184 VMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMM-VKKNEEIER 242
                +  +RR+M+ +N++  +   + YNE VR+L       D R  +++ +   E    
Sbjct: 158 EEEESDAATRRLMKRQNQRQIQYCIQRYNELVRDLIGKACDLDPRRKNVVKLSDGERYNS 217

Query: 243 KREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYCV 302
            +E  +++ +R  ++  E  K     +W  ID E  +   ++E L +E +    +   C+
Sbjct: 218 LQEASRKQSERDRRQYQETFKNQSIASWTIIDQEETS--SDDESLSKEIVNS--NPIMCM 273

Query: 303 LCGKKFKSEKQWTNHEQSKKHKEKV 327
           +C K F+S+ Q  NHE SKKHK+ +
Sbjct: 274 VCNKNFRSQNQLENHENSKKHKKNL 298

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q7TQ20|DNJC2_RAT DnaJ homolog subfamily C member 2 OS=Rattus norvegicus GN=Dnajc2 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 142/299 (47%), Gaps = 53/299 (17%)

Query: 9   YEVLGL---RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEA-TAQFQELVHAYEVLS 64
           Y VLGL   R + T  +I++A+K + L+ HPDK   +G    E     F  +  AYE+LS
Sbjct: 90  YAVLGLGHVRYKATQRQIKAAHKTMVLKHHPDKRKAAGEPIKEGDNDYFTCITKAYEMLS 149

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF- 123
           DP +R  ++S                 P       F N+  S  S++ + F++V+S +F 
Sbjct: 150 DPVKRRAFNS---------------VDPT------FDNSVPSK-SEAKENFFQVFSPVFE 187

Query: 124 -NKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEY 182
            N  +S +              +  P +G++ S +  V AFY++W  F +  +F ++DE 
Sbjct: 188 RNSRWSNK--------------KNVPKLGDMNSSFEDVDAFYSFWYNFDSWREFSYLDEE 233

Query: 183 DVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIER 242
           +      R  R+ +E++N+  R + K+E    +R L       D R+     K  EE + 
Sbjct: 234 EKEKAECRDERKWIEKQNRATRAQRKKEEMNRIRTLVDNAYSCDPRIK----KFKEEGKA 289

Query: 243 KREEEKERK---KRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGL---EEEEIEKK 295
           K+E EK  K   +R E+E  E+ ++ E  A  R+  E + E   ++ L   +E+EI+KK
Sbjct: 290 KKEAEKRAKAEARRKEQEAKEKQRQAELEA-VRLAKEKEEEEVRQQALLAKKEKEIQKK 347

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation. Specifically binds DNA sequence 5'-GTCAAGC-3'.

Rattus norvegicus (taxid: 10116)

>sp|Q6NWJ4|DNJC2_DANRE DnaJ homolog subfamily C member 2 OS=Danio rerio GN=dnajc2 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 127/281 (45%), Gaps = 64/281 (22%)

Query: 9   YEVLGL---RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEA-TAQFQELVHAYEVLS 64
           Y VLGL   R + T  +I++A+K + L+ HPDK   +G    E     F  +  A E+LS
Sbjct: 87  YAVLGLAHVRYKATQKQIKAAHKAMVLKHHPDKRKAAGEQIVEGDNDYFTCITKAIEILS 146

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF- 123
           DP +R  +DS                 P       F N A    ++  + F++V++ +F 
Sbjct: 147 DPVKRRAFDS---------------VDPT------FDN-AVPTKAEGKENFFEVFAPVFE 184

Query: 124 -NKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEY 182
            N  +SV+  +              P +G +ES +  V  FY++W  F +  +F ++DE 
Sbjct: 185 RNARWSVKKHF--------------PSLGTMESSFEDVDNFYSFWYNFDSWREFSYLDEE 230

Query: 183 DVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIER 242
           +      R  RR +E++N+  R + K+E    +R L           +D     +  I++
Sbjct: 231 EKEKAECRDERRWIEKQNRASRAQRKKEEMNRIRTL-----------VDTAYNADPRIKK 279

Query: 243 KREEEKERKKRL----------EKERMERAKRYEEPAWARI 273
            +EEEK RK+            E+E  ERA++ +E A AR+
Sbjct: 280 FKEEEKARKESEKKAKVEAKKREQEEKERARQQQEEA-ARL 319

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation.

Danio rerio (taxid: 7955)

>sp|Q1RMH9|DNJC2_BOVIN DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 42/227 (18%)

Query: 9   YEVLGL---RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEA-TAQFQELVHAYEVLS 64
           Y VLGL   R + T  +I++A+K + L+ HPDK   +G    E     F  +  AYE+LS
Sbjct: 90  YAVLGLGHVRYKATQRQIKAAHKAMVLKHHPDKRKAAGEPIKEGDNDYFTCITKAYEMLS 149

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF- 123
           DP +R  ++S                 P       F N+  S  S++   F++V+S +F 
Sbjct: 150 DPVKRRAFNS---------------VDPT------FDNSVPSK-SEAKDNFFEVFSPVFE 187

Query: 124 -NKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEY 182
            N  +S +              +  P +G++ S +  V AFY++W  F +  +F ++DE 
Sbjct: 188 RNSRWSNK--------------KNVPKLGDMNSSFEDVDAFYSFWYNFDSWREFSYLDEE 233

Query: 183 DVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
           +      R  RR +E++N+  R + K+E    +R L       D R+
Sbjct: 234 EKEKAECRDERRWIEKQNRATRAQRKKEEMNRIRTLVDNAYSCDPRI 280

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation. Specifically binds DNA sequence 5'-GTCAAGC-3'.

Bos taurus (taxid: 9913)

>sp|P54103|DNJC2_MOUSE DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 42/227 (18%)

Query: 9   YEVLGL---RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEA-TAQFQELVHAYEVLS 64
           Y VLGL   R   T  +I++A+K + L+ HPDK   +G    E     F  +  AYE+LS
Sbjct: 90  YAVLGLGHVRYTATQRQIKAAHKAMVLKHHPDKRKAAGEPIKEGDNDYFTCITKAYEMLS 149

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF- 123
           DP +R  ++S                 P       F N+  S  S++   F++V+S +F 
Sbjct: 150 DPVKRRAFNS---------------VDPT------FDNSVPSK-SEAKDNFFQVFSPVFE 187

Query: 124 -NKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEY 182
            N  +S +              +  P +G++ S +  V AFY++W  F +  +F ++DE 
Sbjct: 188 RNSRWSNK--------------KNVPKLGDMNSSFEDVDAFYSFWYNFDSWREFSYLDEE 233

Query: 183 DVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
           +      R  R+ +E++N+  R + K+E    +R L       D R+
Sbjct: 234 EKEKAECRDERKWIEKQNRATRAQRKKEEMNRIRTLVDNAYSCDPRI 280

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation (By similarity). Specifically binds DNA sequence 5'-GTCAAGC-3'.

Mus musculus (taxid: 10090)

>sp|Q4R8H2|DNJC2_MACFA DnaJ homolog subfamily C member 2 OS=Macaca fascicularis GN=DNAJC2 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 42/227 (18%)

Query: 9   YEVLGL---RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEA-TAQFQELVHAYEVLS 64
           Y VLGL   R + T  +I++A+K + L+ HPDK   +G    E     F  +  AYE+LS
Sbjct: 90  YAVLGLGHVRYKATQRQIKAAHKAMVLKHHPDKRKAAGEPIKEGDNDYFTCITKAYEMLS 149

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF- 123
           DP +R  ++S                 P       F N+  S  S++   F++V+S +F 
Sbjct: 150 DPVKRRAFNS---------------VDPT------FDNSVPSK-SEAKDNFFEVFSPVFE 187

Query: 124 -NKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEY 182
            N  +S +              +  P +G++ S +  V  FY++W  F +  +F ++DE 
Sbjct: 188 RNSRWSNK--------------KNVPKLGDMNSSFEDVDIFYSFWYNFDSWREFSYLDEE 233

Query: 183 DVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
           +      R  RR +E++N+  R + K+E    +R L       D R+
Sbjct: 234 EKEKAECRDERRWIEKQNRATRAQRKKEEMNRIRTLVDNAYSCDPRI 280

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation. Specifically binds DNA sequence 5'-GTCAAGC-3'.

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	599
356511845	620	PREDICTED: dnaJ homolog subfamily C memb	0.951	0.919	0.553	1e-163
359481801	595	PREDICTED: dnaJ homolog subfamily C memb	0.961	0.968	0.571	1e-160
449524982	588	PREDICTED: LOW QUALITY PROTEIN: dnaJ hom	0.949	0.967	0.553	1e-159
449441091	588	PREDICTED: dnaJ homolog subfamily C memb	0.961	0.979	0.564	1e-158
15221189	630	DNAJ heat shock N-terminal domain-contai	0.961	0.914	0.531	1e-150
356562611	626	PREDICTED: dnaJ homolog subfamily C memb	0.964	0.923	0.534	1e-150
297839305	632	hypothetical protein ARALYDRAFT_339622 [	0.968	0.917	0.524	1e-147
255547203	553	conserved hypothetical protein [Ricinus	0.866	0.938	0.569	1e-134
115488688	607	Os12g0502700 [Oryza sativa Japonica Grou	0.948	0.935	0.426	1e-105
242083512	609	hypothetical protein SORBIDRAFT_08g01562	0.954	0.939	0.438	1e-102

>gi|356511845|ref|XP_003524632.1| PREDICTED: dnaJ homolog subfamily C member 21-like [Glycine max]

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 353/638 (55%), Positives = 438/638 (68%), Gaps = 68/638 (10%)

Query: 5   KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
           KRC YEVLGL ++C  DEIRSAY++LALQRHPDKLV+SG+SQ EATAQFQEL HAYEVLS
Sbjct: 8   KRCHYEVLGLPRDCAPDEIRSAYRRLALQRHPDKLVKSGISQEEATAQFQELQHAYEVLS 67

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFN 124
           DPKERAWYDSHRSQILFSD N+ SN   VP+L+S+FSNT +SGYSD+ KGFYKVYSD+F+
Sbjct: 68  DPKERAWYDSHRSQILFSDPNTVSNSF-VPDLFSFFSNTVYSGYSDTAKGFYKVYSDVFD 126

Query: 125 KIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDV 184
           KI++ E+++ +KLGLG+D +R+AP+MGNL+SPY QVTAFY+YWLGF TVMDFCWVDEYDV
Sbjct: 127 KIHANEINFARKLGLGVDAVRQAPVMGNLDSPYAQVTAFYSYWLGFCTVMDFCWVDEYDV 186

Query: 185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKR 244
           MAGPNRKSRR+MEEEN K R+KA+REYN+TVR L  FVKKRDKRV+DM VK++ E ERK+
Sbjct: 187 MAGPNRKSRRLMEEENNKARRKARREYNDTVRRLGDFVKKRDKRVIDMKVKRSVEEERKK 246

Query: 245 EEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYCVLC 304
           E+E+ER++RLEKER ERA  YEEP WA+       E   EE +EE E  +   EFYCVLC
Sbjct: 247 EDERERRRRLEKERKERAMAYEEPEWAK------VEEDEEEVVEEVEERENEKEFYCVLC 300

Query: 305 GKKFKSEKQWTNHEQSKKHKEKVADLRESF-------------------VDEDEVMADFG 345
            KKFKSEKQW NHEQSKKHKE+VA+ R+S                     +ED+V  +  
Sbjct: 301 KKKFKSEKQWKNHEQSKKHKERVAEFRDSIGDEEDLEEEEEEEGKEGLESEEDQVGVN-D 359

Query: 346 ELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFD---VADGVEVN-EVDDR 401
           E+D  + +L  R +D V VEE E  +G+    GD     EFFD   V +G E N +V+ R
Sbjct: 360 EIDNGIGDLEARIRDGVNVEEGETRNGIELNDGD-----EFFDASRVKEGEEANVKVNFR 414

Query: 402 FGKEDEDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYD 461
           +   DE      DDE  +L+AM++GHKNRK  A   + +     + +ENE  E    EY+
Sbjct: 415 YDGNDE------DDENGVLEAMVAGHKNRKPRASAHKPKASVAPSPIENENDELGSKEYN 468

Query: 462 NCKSTRRKN--KKDRGKK----SGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCV 515
           N K  R+K   KK++G+K    S G A+ GD +   S     NG+ NS   EES S   V
Sbjct: 469 NRKGARKKRGAKKEKGRKNWEESQGAASSGDYENINS-----NGNDNSHA-EESCSQHFV 522

Query: 516 GNKNNGISDNHSEKDPKIPD--------------QPVDGKGTKKDRKAKLKNSSKGNKTK 561
            N++NGI +    +D KI +              QP D KG  KD K K K SSKG K K
Sbjct: 523 ENEDNGIENEQVGRDDKISNQPADKKGRDKNISHQPADTKGAGKDTKTKAKVSSKGRKGK 582

Query: 562 TASKNSSNVCEKCGQEFETRNKLHKHLGDTGHASLKFR 599
             SKN  N+CE CG+EF++RNKLHKHLGD+GHA++K R
Sbjct: 583 VTSKNVGNICEACGEEFDSRNKLHKHLGDSGHATIKGR 620

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481801|ref|XP_002278802.2| PREDICTED: dnaJ homolog subfamily C member 21-like [Vitis vinifera]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 353/618 (57%), Positives = 436/618 (70%), Gaps = 42/618 (6%)

Query: 1   MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
           MASE RCLYEVLGL  + T DEIRSAYKKLALQRHPDKLV SGLS+A+ATAQFQEL++AY
Sbjct: 1   MASEGRCLYEVLGLTTDATADEIRSAYKKLALQRHPDKLVHSGLSKADATAQFQELLNAY 60

Query: 61  EVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYS 120
           EVLS+P+ERAWYDSHRSQILFS  N  S+ G VPNL+S+FSN+ +SGY D+ KGFYKVYS
Sbjct: 61  EVLSNPEERAWYDSHRSQILFS--NPTSSNGSVPNLFSFFSNSVYSGYDDTRKGFYKVYS 118

Query: 121 DLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVD 180
           ++F+KIY+ EV++ KKLGLG   ++EAP+MGNLESPY QVTAFY YW+GFSTVMDF WVD
Sbjct: 119 EVFDKIYATEVNFAKKLGLG--SIKEAPMMGNLESPYSQVTAFYGYWIGFSTVMDFAWVD 176

Query: 181 EYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEI 240
           EYDV AGPNRKSRR+MEEEN+KLRKKAKREYNETVR LA FVK+RDKRV+DM VKK+ E 
Sbjct: 177 EYDVRAGPNRKSRRLMEEENRKLRKKAKREYNETVRGLAKFVKRRDKRVIDMQVKKSLEE 236

Query: 241 ERKREEEKERK-KRLEKERMERAKRYEEPAWAR-IDDEGDNEVGNEEGLEEEEI---EKK 295
           E+++EEEK RK +  E+ R+ERA+   EP W R ++D+     GN++  E E+     K+
Sbjct: 237 EKRKEEEKTRKWEEFERGRLERARAKVEPEWVRAVEDD-----GNDDDWEFEDAGGGRKE 291

Query: 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMAD-----FGELDGE 350
             EFYCVLC KKFKSEKQW NHE+SKKHKE VA+ RES  +EDE   D      G  D  
Sbjct: 292 EEEFYCVLCRKKFKSEKQWKNHEKSKKHKEWVAEFRESVKEEDERYGDAEAGIHGNGDQS 351

Query: 351 VEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEV-NEVDDRFGKEDEDE 409
             EL E+F+D + +EE EI  G    S +E    E F V D     N  +   G      
Sbjct: 352 EVELQEQFEDGLELEEEEIEDGAQIESSNE----EEFVVGDVSHSGNGTNAELG------ 401

Query: 410 DEDADDEVNMLKAMLSGHKNRKR----VAVRKEDEVLKTEAHVENEIGESEFMEYDN-CK 464
              +DDE+++L+AMLSGHKNRK     VA   E E   TEA V+    E +FMEYDN   
Sbjct: 402 ---SDDEMSVLEAMLSGHKNRKNGKTAVASVLEPESSVTEAPVDINNDEMDFMEYDNRKS 458

Query: 465 STRRKNKKDRGKKSGGEAAKGDRD-GFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGIS 523
           S RR+ KKD+GK+S GEA K D   G K   +E N   ++  I++SS++S   N+ +G  
Sbjct: 459 SRRRRGKKDKGKRSNGEAMKPDSSTGDKGGQDEQNSGSDASHIQDSSTYSVAENETDGKE 518

Query: 524 DNHSEKDPKIPDQPVDGKGTKK-DRKAKLKNSSKGNKTKTASKNS-SNVCEKCGQEFETR 581
           D+H+E + KIP QPV+ K T K +   K K S+K  K K A + +  N CE CG++FE+R
Sbjct: 519 DHHAETN-KIPKQPVNRKATSKGEIDTKPKESNKVRKAKVAQRKALGNTCETCGEDFESR 577

Query: 582 NKLHKHLGDTGHASLKFR 599
           NKLH+HLGDTGHA L+ R
Sbjct: 578 NKLHQHLGDTGHAMLRAR 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524982|ref|XP_004169500.1| PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 21-like [Cucumis sativus]

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 342/618 (55%), Positives = 418/618 (67%), Gaps = 49/618 (7%)

Query: 1   MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
           MAS KRC YEVLGL  +CT DEIRSAY+KLALQRHPDKLVQSGLSQA+ATAQFQEL HAY
Sbjct: 1   MASAKRCHYEVLGLHIDCTPDEIRSAYRKLALQRHPDKLVQSGLSQADATAQFQELQHAY 60

Query: 61  EVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYS 120
           EVLSDPKERAWYDSHRSQILFSD  S ++   VPNL+ +FSNT +SGYSDSG+GFYK+YS
Sbjct: 61  EVLSDPKERAWYDSHRSQILFSDAGSVNSSSVVPNLFPFFSNTVYSGYSDSGRGFYKIYS 120

Query: 121 DLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVD 180
           DLF+KIY  E+++ KKLGL LD++REAP+MGNL+SPY QVTAFYNYWLGF TVMDFCW D
Sbjct: 121 DLFDKIYGNEINFAKKLGLRLDMVREAPVMGNLDSPYTQVTAFYNYWLGFCTVMDFCWAD 180

Query: 181 EYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEI 240
           +YDVMAGPNRKSRR+MEE+NKKLRKKAKREYNETVR LA FVKKRDKRV+DM +K+N E+
Sbjct: 181 QYDVMAGPNRKSRRLMEEDNKKLRKKAKREYNETVRGLAEFVKKRDKRVIDMAMKRNMEM 240

Query: 241 ERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFY 300
           E+K+EEE+ERKK LE+E+ME+ + YEEP WA++      EV  +E    EE  ++  E Y
Sbjct: 241 EKKKEEERERKKXLEREKMEKLRTYEEPDWAKV-----EEVEEDEEDVFEEENRRGKELY 295

Query: 301 CVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDE-----------VMADFGELDG 349
           CVLCGKKFKSEKQW NHEQSKKHKEKVA+ +ES  DEDE              +    D 
Sbjct: 296 CVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKESLDDEDESEEFVDEGEGEGEEETTRQDD 355

Query: 350 EVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDEDE 409
           EV++LGE FK++  +EE E     GGLSG     SE+ DV +   ++ V +  G  D   
Sbjct: 356 EVDKLGEEFKESFDIEEEE-TESGGGLSG-----SEYDDVHEVDRLDMVGEALGSND--- 406

Query: 410 DEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRK 469
               DDE ++L+AM +G +NRK  A   + E    + H ENE  E    E++N K   R 
Sbjct: 407 ----DDERDILEAMAAGLRNRKSAASVNQPEASPVKPHFENENDEPNPAEFENGK---RG 459

Query: 470 NKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSEK 529
            K  R KK G    KG+ +    T+       N   I + SSH      N+  +D +S+K
Sbjct: 460 KKSRRAKKKG----KGNDEAMNETDS-----RNYKTIGDDSSHQQDSTSNSLHNDENSDK 510

Query: 530 DPKIPDQPVDGKGTKKDRKAKLKNSSKGNKTKTASKNSS--------NVCEKCGQEFETR 581
                 +         DRKA  +N  K N   ++    S        N C+ CG+EF++R
Sbjct: 511 GASELAKEQRASSKSADRKAVAQNDLKINSRHSSKGKKSKSTSKDSGNSCDTCGEEFDSR 570

Query: 582 NKLHKHLGDTGHASLKFR 599
           NKLHKHLG TGHASLK+R
Sbjct: 571 NKLHKHLGATGHASLKYR 588

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441091|ref|XP_004138317.1| PREDICTED: dnaJ homolog subfamily C member 21-like [Cucumis sativus]

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 345/611 (56%), Positives = 434/611 (71%), Gaps = 35/611 (5%)

Query: 1   MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
           MAS KRC YEVLGL  +CT DEIRSAY+KLALQRHPDKLVQSGLSQA+ATAQFQEL HAY
Sbjct: 1   MASAKRCHYEVLGLHIDCTPDEIRSAYRKLALQRHPDKLVQSGLSQADATAQFQELQHAY 60

Query: 61  EVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYS 120
           EVLSDPKERAWYDSHRSQILFSD  S ++   VPNL+ +FSNT +SGYSDSG+GFYK+YS
Sbjct: 61  EVLSDPKERAWYDSHRSQILFSDAGSVNSSSVVPNLFPFFSNTVYSGYSDSGRGFYKIYS 120

Query: 121 DLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVD 180
           DLF+KIY  E+++ KKLGL LD++REAP+MGNL+SPY QVTAFYNYWLGF TVMDFCW D
Sbjct: 121 DLFDKIYGNEINFAKKLGLRLDMVREAPVMGNLDSPYTQVTAFYNYWLGFCTVMDFCWAD 180

Query: 181 EYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEI 240
           +YDVMAGPNRKSRR+MEE+NKKLRKKAKREYNETVR LA FVKKRDKRV+DM +K+N E+
Sbjct: 181 QYDVMAGPNRKSRRLMEEDNKKLRKKAKREYNETVRGLAEFVKKRDKRVIDMAMKRNMEM 240

Query: 241 ERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFY 300
           E+K+EEE+ERKKRLE+E+ME+ + YEEP WA++      EV  +E    EE  ++  E Y
Sbjct: 241 EKKKEEERERKKRLEREKMEKLRTYEEPDWAKV-----EEVEEDEEDVFEEENRRGKELY 295

Query: 301 CVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDE-----------VMADFGELDG 349
           CVLCGKKFKSEKQW NHEQSKKHKEKVA+ +ES  DEDE              +    D 
Sbjct: 296 CVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKESLDDEDESEEFVDEGEGEGEEETTRQDD 355

Query: 350 EVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDEDE 409
           EV++LGE FK++  +EE E     GGLSG     SE+ DV +    + V +  G  D   
Sbjct: 356 EVDKLGEEFKESFDIEEEET-ESGGGLSG-----SEYDDVHEVDRSDMVGEALGSND--- 406

Query: 410 DEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRK 469
               DDE ++L+AM +G +NRK  A   + E    + H ENE  E    E++N K   +K
Sbjct: 407 ----DDERDILEAMAAGLRNRKSAASVNQPEASPVKPHFENENDEPNPAEFENGKRG-KK 461

Query: 470 NKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSEK 529
           +++ + K  G + A  + D   S N + NG  +S   ++S+S+S   ++N+    +   K
Sbjct: 462 SRRAKKKGKGNDEAMNETD---SRNYKTNG-DDSSHQQDSTSNSLHNDENSDKGASELAK 517

Query: 530 DPKIPDQPVDGKGT-KKDRKAKLKNSSKGNKTKTASKNSSNVCEKCGQEFETRNKLHKHL 588
           + +   +  D K   + D K   ++SSKG K+K+ SK+S N C+ CG+EF++RNKLHKHL
Sbjct: 518 EQRASSKSADRKAVAQNDLKINSRHSSKGKKSKSTSKDSGNSCDTCGEEFDSRNKLHKHL 577

Query: 589 GDTGHASLKFR 599
           G TGHASLK+R
Sbjct: 578 GATGHASLKYR 588

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221189|ref|NP_177565.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gi|12324903|gb|AAG52405.1|AC020579_7 putative heat shock protein; 32627-30541 [Arabidopsis thaliana] gi|332197449|gb|AEE35570.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 343/645 (53%), Positives = 433/645 (67%), Gaps = 69/645 (10%)

Query: 3   SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQS-GLSQAEATAQFQELVHAYE 61
           SEKRC YEVLG+ KE + DEIRS+Y++LALQRHPDKL+++ GLS+AEATAQFQELVHAYE
Sbjct: 7   SEKRCHYEVLGISKESSPDEIRSSYRRLALQRHPDKLMKAAGLSEAEATAQFQELVHAYE 66

Query: 62  VLSDPKERAWYDSHRSQILFSD---LNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKV 118
           VLSDPKERAWYDSHRSQILF+D      + + G VP+L+++FS T +SGYSD+GKGFYKV
Sbjct: 67  VLSDPKERAWYDSHRSQILFADHSSAGGSKSGGSVPDLFAFFSPTVYSGYSDTGKGFYKV 126

Query: 119 YSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCW 178
           Y D+FN +Y  E+ + + LGL +D +REAPIMGNLESPY QVTAFYNYWLGF TVMDFCW
Sbjct: 127 YYDVFNSVYLNEIKFARTLGLRMDSVREAPIMGNLESPYAQVTAFYNYWLGFCTVMDFCW 186

Query: 179 VDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNE 238
           VDEYDVM GPNRKSRR+MEEENKK RKKAKREYN+TVR LA FVKKRDKRV+DM+VKKN 
Sbjct: 187 VDEYDVMGGPNRKSRRMMEEENKKSRKKAKREYNDTVRGLAEFVKKRDKRVIDMLVKKNA 246

Query: 239 EIERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRS- 297
           E+E+K+EEE+ERKK++EKER+ERA  YEEP WA+   EG++E      LEEE+ + KR  
Sbjct: 247 EMEKKKEEERERKKKMEKERLERAMNYEEPEWAKA-HEGEDEGAGLSELEEEDDDAKRKN 305

Query: 298 -EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADF---GELDG--EV 351
            + YC++C KKFKSEKQW NHEQSKKHKEKVA+LRESF D +E   +    G LD    V
Sbjct: 306 EQLYCIVCSKKFKSEKQWKNHEQSKKHKEKVAELRESFTDYEEENEEEEIDGPLDSPESV 365

Query: 352 EELGERFKD--NVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDED- 408
           EEL E+ ++  N+  EER++   V G                  E +E DD +   +ED 
Sbjct: 366 EELHEKLQEELNIDNEERDVKKEVVG------------------EADETDDEYFVAEEDM 407

Query: 409 ----EDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCK 464
               E ED DDE+ +LK M+SG KN+++  V KE++  +TE  +E +   +EF E+DN K
Sbjct: 408 QGSSESEDEDDEMTLLKKMVSGQKNKQKNVVSKEEDEDETEVEIEGDT--AEFSEFDNQK 465

Query: 465 STRRKN--KKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGI 522
           ST R    K++R K++ G     D    +   E  N   N    E +S       K+   
Sbjct: 466 STGRNKEAKEERNKQNAGNDMADDTSKVQIPGEGGNPDENMNATESASGALADSQKDEAN 525

Query: 523 S---DNH---------------------SEKDPKIPD-QPVDGKGTKKDRK--AKLKNSS 555
           S   DN                      +EK  +  D Q V+     +D K   + K S+
Sbjct: 526 SMEYDNRKSTGRRRRSKKGKDKNNQGELNEKSSEADDTQYVNRDMESQDYKKAPRSKKST 585

Query: 556 KGNKTK-TASKNSSNVCEKCGQEFETRNKLHKHLGDTGHASLKFR 599
           +G KTK T  KNSSN C++CG+EFE+R KLHKHL D+GHA++K R
Sbjct: 586 RGMKTKGTTKKNSSNECDRCGEEFESRTKLHKHLADSGHATVKSR 630

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562611|ref|XP_003549563.1| PREDICTED: dnaJ homolog subfamily C member 21-like [Glycine max]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 343/642 (53%), Positives = 440/642 (68%), Gaps = 64/642 (9%)

Query: 2   ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
           ++ KRC YEVLGL ++C  DEIRSAY++LALQRHPDKLV+SGLSQ EATAQFQEL HAYE
Sbjct: 5   SAAKRCHYEVLGLPRDCAPDEIRSAYRRLALQRHPDKLVKSGLSQEEATAQFQELQHAYE 64

Query: 62  VLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSD 121
           VLSDPKERAWYDSHRSQILFSD N+ SN   VP+L+S+FSNT +SGY+++ KGFYKVYSD
Sbjct: 65  VLSDPKERAWYDSHRSQILFSDPNTVSNSF-VPDLFSFFSNTVYSGYTNTAKGFYKVYSD 123

Query: 122 LFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDE 181
           +F+KI++ E+++ +KLGL  D +R+AP+MGNL+SPY QVTAFY+YWLGF TVMDFCWVDE
Sbjct: 124 VFDKIHANEINFARKLGLDSDAVRQAPVMGNLDSPYAQVTAFYSYWLGFCTVMDFCWVDE 183

Query: 182 YDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIE 241
           YDVMAGPNRKSRR+MEEEN K+R+KA+REYN+TVR L  FVKKRDKRV+DM VK++ E E
Sbjct: 184 YDVMAGPNRKSRRIMEEENNKVRRKARREYNDTVRRLGDFVKKRDKRVIDMKVKRSVEEE 243

Query: 242 RKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYC 301
           RK+EEE+ERK+RLEKE+ ERA  YEEP WA+       +   EE +EEE  E++  E YC
Sbjct: 244 RKKEEERERKRRLEKEKKERAMAYEEPEWAK------VDEDVEEVVEEEVEERENEELYC 297

Query: 302 VLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVM------------ADFG---E 346
           VLC KKFKS+KQW NHEQSKKHKE+VA+ R S  D++E +            A+ G   E
Sbjct: 298 VLCKKKFKSDKQWKNHEQSKKHKERVAEFRGSIGDDEEDLEEEEEGEEGLESAEVGVNDE 357

Query: 347 LDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVA-------DGVEVNEVD 399
            D  + +L  R K+ + VEE E  +G+  L+ D+    EF D +        GV V+  D
Sbjct: 358 TDNGIGDLEARIKNGLNVEEGETRNGI-ELNDDD----EFIDASRVKEGEEAGVSVS-FD 411

Query: 400 DRFGKEDEDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEF-- 457
           +   +E+E+E+E+ D E  +L+AM++GHKNRK  A   + +       +ENE  + E   
Sbjct: 412 EDGNEEEEEEEEEGDIENGVLEAMVAGHKNRKPRASTHKPKTSVAPLPIENE-NDDELGP 470

Query: 458 MEYDN------CKSTRRKNKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSS 511
           MEY+N       +  +++  +   ++S   AA GD +   S N   N H      EESSS
Sbjct: 471 MEYNNQKGARKKRRAKKEKGRKNWEESQEAAASGDYEDIIS-NANDNSH-----AEESSS 524

Query: 512 HSCVGNKNNGISDNHSEKDPKIPDQP--------------VDGKGTKKDRKAKLKNSSKG 557
              + N++NGI +    +D KI +QP               D KG  KD K K K SSKG
Sbjct: 525 QHFMENEDNGIENEQVGRDEKISNQPADKKGRDKNISQQAADKKGAGKDTKTKAKVSSKG 584

Query: 558 NKTKTASKNSSNVCEKCGQEFETRNKLHKHLGDTGHASLKFR 599
            K K ASKN  N+C+ CG+EFETRNKLHKHLGD+GHA++K R
Sbjct: 585 RKGKVASKNVGNICDACGEEFETRNKLHKHLGDSGHATIKGR 626

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839305|ref|XP_002887534.1| hypothetical protein ARALYDRAFT_339622 [Arabidopsis lyrata subsp. lyrata] gi|297333375|gb|EFH63793.1| hypothetical protein ARALYDRAFT_339622 [Arabidopsis lyrata subsp. lyrata]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 337/643 (52%), Positives = 436/643 (67%), Gaps = 63/643 (9%)

Query: 3   SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSG-LSQAEATAQFQELVHAYE 61
           SEKRC YEVLG+ KE + DEIRS+Y++LALQRHPDKL+++G LS+AEATAQFQELVHAYE
Sbjct: 7   SEKRCHYEVLGISKESSPDEIRSSYRRLALQRHPDKLMKAGGLSEAEATAQFQELVHAYE 66

Query: 62  VLSDPKERAWYDSHRSQILFSDLNSASNC-------GPVPNLYSYFSNTAFSGYSDSGKG 114
           VLSDPKERAWYDSHRSQILF+D +SA          G VP+L+++F+ T +SGYSD GKG
Sbjct: 67  VLSDPKERAWYDSHRSQILFADHSSAGGSKSGGMPGGSVPDLFAFFTPTVYSGYSDIGKG 126

Query: 115 FYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVM 174
           FYKVY D+FN +Y  E+ + + LGL +D +REAPIMGNLESPY QVTAFYNYWLGFSTVM
Sbjct: 127 FYKVYYDVFNSVYLNEIKFARTLGLRMDSVREAPIMGNLESPYAQVTAFYNYWLGFSTVM 186

Query: 175 DFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMV 234
           DFCWVDEYDVMAGPNRKSRR+MEEENKK+RKKAKREYNETVR LA FVKKRDKRV+DMMV
Sbjct: 187 DFCWVDEYDVMAGPNRKSRRLMEEENKKVRKKAKREYNETVRGLAEFVKKRDKRVIDMMV 246

Query: 235 KKNEEIERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEK 294
           KKN E+E+K+EEE+ERKK++EKER+ERA  YEEP WA+   EG+ E      LEEE+ + 
Sbjct: 247 KKNAEMEKKKEEERERKKKMEKERLERAMNYEEPEWAKA-QEGEEEGAGFNVLEEEDDDA 305

Query: 295 KRS--EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDG--- 349
           KR   + YC++C KKFKSEKQW NHEQSKKHKEKVA+LRESF D +E + +  E DG   
Sbjct: 306 KRKNEQLYCIVCSKKFKSEKQWRNHEQSKKHKEKVAELRESFTDYEEEIEE-EETDGPLK 364

Query: 350 ---EVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKED 406
               VEEL E+ ++ + +++ E       +   ++ + E+F VA+       +D  G   
Sbjct: 365 PPESVEELHEKLQEELNIDDEENDVEDEVVGEADETDEEYF-VAE-------EDMKGSS- 415

Query: 407 EDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKST 466
             E ED DDE+ +LK M+SG K +++ AV KE++ ++ E   +     +EF E D  K+T
Sbjct: 416 --ESEDEDDEMTLLKKMVSGQKKKRKNAVSKEEDEIEVEIESDT----AEFSEVDYQKNT 469

Query: 467 RR-------KNKKDRGKKSGGEAAK-------GDRDGFKSTNEEANGHHNSGVIEESSSH 512
            R       +NK++ GK    + +K       G+ D   +  + A+G       +E++S 
Sbjct: 470 GRNKEAKEERNKQNAGKDMADDTSKVQVPGDDGNPDENVNATDSASGAFEDSQKDEANSM 529

Query: 513 SCVGNKNNGI---------SDNHS---EKDPKIPDQPV---DGKGTKKDRKAKLKNSSKG 557
                K+ G           +N     EK  +  D P    D +     +  + K S++G
Sbjct: 530 EYDNRKSTGRRRRSKKGKDKNNQGELMEKSSEADDTPYVNRDMEAQDYKKAPRSKKSTRG 589

Query: 558 NKTK-TASKNSSNVCEKCGQEFETRNKLHKHLGDTGHASLKFR 599
            KTK T  KNSSN C++CG+EFE+R KLHKHL D+GHA++K R
Sbjct: 590 MKTKGTTKKNSSNECDRCGEEFESRTKLHKHLADSGHATVKSR 632

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547203|ref|XP_002514659.1| conserved hypothetical protein [Ricinus communis] gi|223546263|gb|EEF47765.1| conserved hypothetical protein [Ricinus communis]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 327/574 (56%), Positives = 396/574 (68%), Gaps = 55/574 (9%)

Query: 2   ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
           ASEKRC YEVLGL ++C+ DEIR+AYKKLALQRHPDKL++SGLSQ+EATAQFQEL  AYE
Sbjct: 3   ASEKRCHYEVLGLSRDCSPDEIRAAYKKLALQRHPDKLIKSGLSQSEATAQFQELSQAYE 62

Query: 62  VLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSD 121
           +LSDPKERAWYDSHRSQILFS+ N  S+   +PN                          
Sbjct: 63  ILSDPKERAWYDSHRSQILFSNPNDVSS-SVIPNF------------------------- 96

Query: 122 LFNKIYSVEVSYVKKLGLGL-DVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVD 180
              KIY+ EVS+ KKLGLGL + +RE P+MGNLESPY QVTAFYNYWLGF TVMDFCWVD
Sbjct: 97  ---KIYANEVSFCKKLGLGLENNVREMPLMGNLESPYEQVTAFYNYWLGFVTVMDFCWVD 153

Query: 181 EYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEI 240
           +YDVMAG NRKSRRVMEEENKKLRKKA+REYNETVR LA FVKKRDKRV+DMMVKKN E+
Sbjct: 154 QYDVMAGVNRKSRRVMEEENKKLRKKARREYNETVRGLAEFVKKRDKRVIDMMVKKNTEM 213

Query: 241 ERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRS--- 297
           E+++EEE+ERKK+LE+ER+ERA+ YEEP WAR+++E   +V + E   EEE+E K+    
Sbjct: 214 EKRKEEERERKKKLERERIERARAYEEPEWARVNEE---DVEDIEEFHEEEMENKKGNGG 270

Query: 298 -EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDG------- 349
            E YCV+CGKKFKSEKQW NHEQSKKHKEKVA+LRESF  EDE   + G  DG       
Sbjct: 271 KELYCVVCGKKFKSEKQWKNHEQSKKHKEKVAELRESFESEDE---NDGYFDGVEEDNHE 327

Query: 350 -EVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDED 408
             V+E+ ERFKD V + + E G     L   ED    FFD  D  E+   +   G  DED
Sbjct: 328 HNVDEVEERFKDGVRITDEENGVENPELINKED---GFFDAEDFDEMEGSNVEDGNGDED 384

Query: 409 EDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRR 468
           + ED D E+++L+AM++GHK+RK    R   E   TE HV++   E    EY+N K+ RR
Sbjct: 385 DVEDGDAEMSILEAMVTGHKSRKSRKARHLGEHFPTEVHVDDVNEEPNVTEYNNRKTRRR 444

Query: 469 KNKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSE 528
           K KKDRGK  G   A+GD D  KS +++  G  +    EE SSHS V N+N+G  ++H  
Sbjct: 445 KGKKDRGKSDGRVPARGDFDE-KSPDDKIEGLDDKRT-EEFSSHSFVENENDGNINDHLR 502

Query: 529 KDPKIPDQPVDG-KGTKKDRKAKLKNSSKGNKTK 561
           K+ +  DQPVD  +  KK+   K  NSSKG K K
Sbjct: 503 KNHR-SDQPVDNQRAKKKESNTKSNNSSKGKKGK 535

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115488688|ref|NP_001066831.1| Os12g0502700 [Oryza sativa Japonica Group] gi|108862715|gb|ABA98642.2| DnaJ domain containing protein, expressed [Oryza sativa Japonica Group] gi|113649338|dbj|BAF29850.1| Os12g0502700 [Oryza sativa Japonica Group]

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 268/629 (42%), Positives = 379/629 (60%), Gaps = 61/629 (9%)

Query: 2   ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
           A+ KRC YEVLG+ ++C+  +I+ A+++LAL  HPDK    G   A ATA FQEL HA+ 
Sbjct: 5   AAPKRCYYEVLGVPRDCSPADIKLAFRRLALSLHPDKQ-PPGSDVAAATAAFQELQHAHS 63

Query: 62  VLSDPKERAWYDSHRSQILFSDLN-----------SASNCGPVPNLYSYFSNTAFSGYSD 110
           VLSDP ER++YDSHRSQILFSD +           ++++  PVP+L+++FS++AFSG+SD
Sbjct: 64  VLSDPHERSYYDSHRSQILFSDHHPSSGPGRGGGVASASASPVPDLFAFFSSSAFSGFSD 123

Query: 111 SGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGF 170
           SG+GFYKVY D+F+++++ E++Y +++G+  D +   P++GNL+SP+ QV AFY+YWLGF
Sbjct: 124 SGRGFYKVYGDVFDRVFAQELAYARRMGMPADAVPTPPVIGNLDSPHAQVAAFYSYWLGF 183

Query: 171 STVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVM 230
            T MDF W  E+D   G +R+ RR+MEE+NKK  +KA+REYN+ VR LAAF KKRDKRV+
Sbjct: 184 GTAMDFGWAAEWDAARGESRRVRRLMEEDNKKATRKARREYNDAVRGLAAFCKKRDKRVV 243

Query: 231 DMMVKKNEEIERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEE 290
           DM +KK  E E+++ EE  RKK  E+ R ERA  Y+EP WAR+D+  D     E+  EEE
Sbjct: 244 DMALKKKVEEEKRKAEEAARKKEEERRRKERAMAYQEPEWARVDE--DEAAVFEDDEEEE 301

Query: 291 EIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDGE 350
              K++ E YCV C KKFKS+KQW NHEQSKKH++KV++LR  F +E+E + D  E + E
Sbjct: 302 TRAKRKEELYCVACNKKFKSDKQWKNHEQSKKHRDKVSELRMVFEEEEEALKDAEEEEPE 361

Query: 351 VEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDEDED 410
             ++G  F+                    E  ESEF D A+ +  +E+ +  G E  DE+
Sbjct: 362 EVDVGFDFQ-----------------PAQESEESEFSDAAEEL-ADELSE--GLEVRDEE 401

Query: 411 EDAD-------------DEVNMLKAML--SGHKNRKRVAVRKEDEVLKTEAHVENEIGES 455
           E  D             DE ++L+ ML  S  KNRK   V  ++E     A  +++  ++
Sbjct: 402 EKGDKHLGNGEQKVGSYDETSVLEEMLSRSRRKNRKSGFVAPQEEASPAGAMDDDDDEDT 461

Query: 456 EFMEYDNCKSTRRKNKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCV 515
            + E +N K   +K ++ R  K GG  A   + G KS N+     HN+   E  +     
Sbjct: 462 SY-EINNVK---KKGRRRRAAKKGGTYADNGQ-GRKSENQPEESRHNND--ENGADDKME 514

Query: 516 GNKNNGISDNHSEKDPKIPDQPVDGKGTKKDRK-----AKLKNSSKGNKTKTASKNSSNV 570
           G  +N  S   S++D +        K  K   K     ++ K +SKG K K  SK  SN 
Sbjct: 515 GPSSNEDSAAASKEDQQKGKTGNTKKNKKGTEKNTTISSEQKGTSKGKKQKEVSKAPSND 574

Query: 571 CEKCGQEFETRNKLHKHLGDTGHASLKFR 599
           CE CG  F++RNKL  HL +TGHA LK R
Sbjct: 575 CETCGSTFDSRNKLFSHLEETGHAMLKTR 603

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242083512|ref|XP_002442181.1| hypothetical protein SORBIDRAFT_08g015620 [Sorghum bicolor] gi|241942874|gb|EES16019.1| hypothetical protein SORBIDRAFT_08g015620 [Sorghum bicolor]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 273/622 (43%), Positives = 381/622 (61%), Gaps = 50/622 (8%)

Query: 3   SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
           + KRC YEVLGL ++C+  +I+ A+++LAL  HPDK    G   A ATA FQEL HA+ V
Sbjct: 8   APKRCYYEVLGLPRDCSPTDIKLAFRRLALSLHPDKQA-PGSDLAAATAAFQELQHAHSV 66

Query: 63  LSDPKERAWYDSHRSQILFSDLNSAS--NCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYS 120
           LSDP+ERA+YDSHRSQILFSD  SA   +  PVP+L+++FS++AFSG+SD+G+GFYKVY 
Sbjct: 67  LSDPQERAYYDSHRSQILFSDPASAGAKSASPVPDLFAFFSSSAFSGFSDTGRGFYKVYG 126

Query: 121 DLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVD 180
           D+F+++++ E++Y +++G+        P++GNL+SPY QVTAFY+YWLGF +VMDF W  
Sbjct: 127 DVFDRVFAQELAYARRMGVPEPAA--PPVIGNLDSPYAQVTAFYSYWLGFGSVMDFGWAA 184

Query: 181 EYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEI 240
           E+D   G NR+ RR+MEE+NKK  +KA+REYN+ VR LAAF KKRDKRV+DM +KK  E 
Sbjct: 185 EWDAARGENRRVRRLMEEDNKKAMRKARREYNDAVRGLAAFCKKRDKRVVDMALKKKAEE 244

Query: 241 ERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFY 300
           E+++ EEKERKK  EK + ERA  Y+EP WAR ++E +     +E  E     KK+ E Y
Sbjct: 245 EKRKAEEKERKKEEEKRKKERAMAYQEPDWARAEEEEEGLYDEDEEEEMR--AKKKEELY 302

Query: 301 CVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKD 360
           CV C KKFKS+KQW NHEQSKKH++K+A+LR +F +E+E + +  E +G+  E+      
Sbjct: 303 CVACNKKFKSDKQWKNHEQSKKHRDKIAELRMAFKEEEESLKEAEEGEGDWNEV------ 356

Query: 361 NVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDEDEDEDAD------ 414
           +VG + +         + + D ES F D A+ +     +     + ED D+D D      
Sbjct: 357 DVGFDFKP--------TQESDDESAFSDAAEELAEEFEEGLEVHDKEDGDKDFDSAEQEV 408

Query: 415 ---DEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKNK 471
              DE ++L+AMLS  K+RK   V   +E L   A  +++   S   E +N K   R+ +
Sbjct: 409 GSYDEASVLEAMLSSRKSRKGGYVAPPEEALSGVAEDDDDHRSS---EANNAKRKGRRRR 465

Query: 472 KDRGKKSGGEAAKGDRDGFKSTNEEANGHHN--SGVIEESSSHS------CVGNKNNG-- 521
             + ++  G  A  +  G      E +GH N    ++E  SS          G+K NG  
Sbjct: 466 ATKKEQDEGSYADNEHHGKSEVQPEGSGHGNDVDDMMEGPSSSKEDNGSVSKGDKQNGEN 525

Query: 522 ----ISDNHSEKDPKIPDQPVDGKGTKKDRKAKLKNSSKGNKTKTASKNSSNVCEKCGQE 577
                +  + +   K      D KGT    KA+ K++SKG K K  SK  SN CE CG  
Sbjct: 526 MNPKKNKKNKKGTEKKTTVSTDQKGTS---KAEQKSTSKGKKQKEVSKAPSNDCETCGGT 582

Query: 578 FETRNKLHKHLGDTGHASLKFR 599
           FE+RNKL  HL +TGHA LK R
Sbjct: 583 FESRNKLFSHLEETGHAMLKTR 604

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	599
TAIR|locus:2019647	630	AT1G74250 [Arabidopsis thalian	0.914	0.869	0.473	6.8e-127
UNIPROTKB|F1LPX6	533	Dnajc21 "Protein Dnajc21" [Rat	0.358	0.403	0.444	6.9e-59
UNIPROTKB|F1SND3	533	DNAJC21 "Uncharacterized prote	0.358	0.403	0.442	2.3e-58
UNIPROTKB|Q0II91	533	DNAJC21 "DnaJ homolog subfamil	0.358	0.403	0.44	2.9e-58
UNIPROTKB|E2QZB7	532	DNAJC21 "Uncharacterized prote	0.358	0.404	0.435	6.1e-58
DICTYBASE|DDB_G0286579	633	dnaja5 "DnaJ homolog subfamily	0.373	0.353	0.395	6.2e-58
ZFIN|ZDB-GENE-030131-8928	545	dnajc21 "DnaJ (Hsp40) homolog,	0.360	0.396	0.451	7.8e-58
UNIPROTKB|Q5F1R6	531	DNAJC21 "DnaJ homolog subfamil	0.358	0.404	0.435	1.8e-56
UNIPROTKB|E1C4H3	537	DNAJC21 "Uncharacterized prote	0.357	0.398	0.431	1.3e-55
UNIPROTKB|G4N7F1	548	MGG_03581 "Uncharacterized pro	0.544	0.594	0.345	2.9e-52

TAIR|locus:2019647 AT1G74250 [Arabidopsis thaliana (taxid:3702)]

 Score = 1246 (443.7 bits), Expect = 6.8e-127, P = 6.8e-127
 Identities = 274/579 (47%), Positives = 353/579 (60%)

Query:     3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQS-GLSQAEATAQFQELVHAYE 61
             SEKRC YEVLG+ KE + DEIRS+Y++LALQRHPDKL+++ GLS+AEATAQFQELVHAYE
Sbjct:     7 SEKRCHYEVLGISKESSPDEIRSSYRRLALQRHPDKLMKAAGLSEAEATAQFQELVHAYE 66

Query:    62 VLSDPKERAWYDSHRSQILFSDLNSASNC---GPVPNLYSYFSNTAFSGYSDSGKGFYKV 118
             VLSDPKERAWYDSHRSQILF+D +SA      G VP+L+++FS T +SGYSD+GKGFYKV
Sbjct:    67 VLSDPKERAWYDSHRSQILFADHSSAGGSKSGGSVPDLFAFFSPTVYSGYSDTGKGFYKV 126

Query:   119 YSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCW 178
             Y D+FN +Y  E+ + + LGL +D +REAPIMGNLESPY QVTAFYNYWLGF TVMDFCW
Sbjct:   127 YYDVFNSVYLNEIKFARTLGLRMDSVREAPIMGNLESPYAQVTAFYNYWLGFCTVMDFCW 186

Query:   179 VDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVXXXX 238
             VDEYDVM GPNRKSRR+MEEENKK RKKAKREYN+TVR LA FVKKRDKRV+DM+V    
Sbjct:   187 VDEYDVMGGPNRKSRRMMEEENKKSRKKAKREYNDTVRGLAEFVKKRDKRVIDMLVKKNA 246

Query:   239 XXXXXXXXXXXXXXXXXXXXXXXXXXYEEPAWARXXXXXXXXXXXXXXXXXXXXXKKRSE 298
                                       YEEP WA+                     K+++E
Sbjct:   247 EMEKKKEEERERKKKMEKERLERAMNYEEPEWAKAHEGEDEGAGLSELEEEDDDAKRKNE 306

Query:   299 -FYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVD------EDEVMADFXXXXXXX 351
               YC++C KKFKSEKQW NHEQSKKHKEKVA+LRESF D      E+E+           
Sbjct:   307 QLYCIVCSKKFKSEKQWKNHEQSKKHKEKVAELRESFTDYEEENEEEEIDGPLDSPESVE 366

Query:   352 XXXXXRFKD-NVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKXXXXXX 410
                    ++ N+  EER++   V G   DE  + E+F VA+       +D  G       
Sbjct:   367 ELHEKLQEELNIDNEERDVKKEVVG-EADE-TDDEYF-VAE-------EDMQGSSESEDE 416

Query:   411 XXXXXXVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKN 470
                   + +LK M+SG KN+++  V KE++  +TE  +E +   +EF E+DN KST R  
Sbjct:   417 DDE---MTLLKKMVSGQKNKQKNVVSKEEDEDETEVEIEGDT--AEFSEFDNQKSTGRNK 471

Query:   471 --KKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSE 528
               K++R K++ G     D    +   E  N   N    E +S       K+   S  +  
Sbjct:   472 EAKEERNKQNAGNDMADDTSKVQIPGEGGNPDENMNATESASGALADSQKDEANSMEYDN 531

Query:   529 KDPKIPDQPVDGKGTKKDRKAKL-KNSSKGNKTKTASKN 566
             +      +    KG  K+ + +L + SS+ + T+  +++
Sbjct:   532 RK-STGRRRRSKKGKDKNNQGELNEKSSEADDTQYVNRD 569

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|F1LPX6 Dnajc21 "Protein Dnajc21" [Rattus norvegicus (taxid:10116)]

 Score = 487 (176.5 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
 Identities = 100/225 (44%), Positives = 140/225 (62%)

Query:     6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
             +C YE LG+R++ + +E++ AY+KLAL+ HPDK + +    AEA  QF+ +  AY+VLSD
Sbjct:     2 KCHYEALGVRRDASEEELKKAYRKLALRWHPDKNLDNA---AEAAEQFKLIQAAYDVLSD 58

Query:    66 PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNK 125
             P+ERAWYD+HR  +L   L+       + +L  YF+ T +SGY D  KGFY VY D+F  
Sbjct:    59 PQERAWYDNHREALLKGGLDGEYQDDSL-DLLHYFTVTCYSGYGDDEKGFYAVYRDVFAL 117

Query:   126 IYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYDV 184
             I   E+  + + G       + P  G+ +S Y  V   FY YW  F T  +F W +EYD 
Sbjct:   118 IAKEELECMSEGGA-----EDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKEEYDT 172

Query:   185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
                 NR  +R ME+ENKK+R KA++E NE VR+L AF++KRDKRV
Sbjct:   173 RQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDKRV 217

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1SND3 DNAJC21 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 473 (171.6 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
 Identities = 100/226 (44%), Positives = 141/226 (62%)

Query:     6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHP-DKLVQSGLSQAEATAQFQELVHAYEVLS 64
             +C YE LG+R++ + +E++ AY+KLAL+ HP DK + +    AEA  QF+ +  AY+VLS
Sbjct:     2 KCHYEALGVRRDASEEELKKAYRKLALKWHPADKNLDNA---AEAAEQFKLIQAAYDVLS 58

Query:    65 DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFN 124
             DP+ERAWYD+HR  +L   L+       + +L  YF+ T +SGY D  KGFY VY ++F 
Sbjct:    59 DPQERAWYDNHREALLKGGLDGEYQDDSL-DLLHYFTVTCYSGYGDDEKGFYAVYRNVFE 117

Query:   125 KIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYD 183
              I   E+    +  L  DV  + P  G+ +S Y  V   FY YW  F T  +F W +EYD
Sbjct:   118 MIAKEEL----ESALEEDV-EDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKEEYD 172

Query:   184 VMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
                  NR  +R ME+ENKK+R KA++E NE VR+L AF++KRD+RV
Sbjct:   173 TRQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDRRV 218

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q0II91 DNAJC21 "DnaJ homolog subfamily C member 21" [Bos taurus (taxid:9913)]

 Score = 480 (174.0 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
 Identities = 99/225 (44%), Positives = 141/225 (62%)

Query:     6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
             +C YE LG+R++ + +E++ AY+KLAL+ HPDK + +    AEA  QF+ +  AY+VLSD
Sbjct:     2 KCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNA---AEAAEQFKLIQAAYDVLSD 58

Query:    66 PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNK 125
             P+ERAWYD+HR  +L   L+       + +L  YF+ T +SGY D  KGFY VY ++F  
Sbjct:    59 PQERAWYDNHREALLKGGLDGEYQDDSL-DLLHYFTVTCYSGYGDDEKGFYTVYRNVFEM 117

Query:   126 IYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYDV 184
             I   E+    +  L  D + + P  G+ +S Y  V   FY YW  F T  +F W +EYD 
Sbjct:   118 IAKEEL----ESALEED-MEDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKEEYDT 172

Query:   185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
                 NR  +R ME+ENKK+R KA++E NE VR+L AF++KRD+RV
Sbjct:   173 RQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDRRV 217

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2QZB7 DNAJC21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 483 (175.1 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
 Identities = 98/225 (43%), Positives = 140/225 (62%)

Query:     6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
             +C YE LG+R++ + +E++ AY+KLAL+ HPDK + +    AEA  QF+ +  AY+VLSD
Sbjct:     2 KCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNA---AEAAEQFKLIQAAYDVLSD 58

Query:    66 PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNK 125
             P+ERAWYD+HR  +L   L+       + +L  YF+ T +SGY D  KGFY VY ++F  
Sbjct:    59 PQERAWYDNHREALLKGGLDGEYQDDSL-DLLHYFTVTCYSGYGDDEKGFYTVYRNVFEM 117

Query:   126 IYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYDV 184
             I   E+  V +     + + + P  G+ +S Y  V   FY YW  F T   F W +EYD 
Sbjct:   118 IAKEELESVLE-----EEMEDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKSFAWKEEYDT 172

Query:   185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
                 NR  +R ME+ENKK+R KA++E NE VR+L AF++KRD+RV
Sbjct:   173 RQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDRRV 217

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

DICTYBASE|DDB_G0286579 dnaja5 "DnaJ homolog subfamily A member 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 414 (150.8 bits), Expect = 6.2e-58, Sum P(3) = 6.2e-58
 Identities = 93/235 (39%), Positives = 136/235 (57%)

Query:     1 MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
             M ++ RC YEVLG+ K    DEI+ +Y+KLAL  HPDK  Q  LS AE   +F+E+ +AY
Sbjct:     1 MNTKLRCYYEVLGIEKSAKQDEIKISYRKLALMWHPDKN-QHQLSIAEE--KFKEINNAY 57

Query:    61 EVLSDPKERAWYDSHRSQILFSDLNSASNCGPVP---NLYSYFSNTAFSGYSDSGK-GFY 116
              VLSDP ER WYD HR  IL      + +        NL+ YF+ + F+ ++D+ + GF+
Sbjct:    58 TVLSDPNERKWYDDHREAILRGGRGGSGDGDDDDDEINLWPYFNTSIFTSFNDNDETGFF 117

Query:   117 KVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDF 176
             K+YS +F  I  +E    + +    +     P  G+  +P  +V  FY++W  F T   F
Sbjct:   118 KIYSRIFEIIDKIEEGE-ETIN---EYHHHPPKFGDSTTPIAEVLKFYSFWKDFVTKKKF 173

Query:   177 CWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMD 231
                D Y +   PNR+ +R+ME+EN+K R KA+  YNE VR LA+F+   DKR+ +
Sbjct:   174 TSSDLYHLSDAPNRQIKRLMEKENQKERSKARSAYNERVRHLASFIYNHDKRITE 228

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-030131-8928 dnajc21 "DnaJ (Hsp40) homolog, subfamily C, member 21" [Danio rerio (taxid:7955)]

 Score = 484 (175.4 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
 Identities = 102/226 (45%), Positives = 138/226 (61%)

Query:     6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAE-ATAQFQELVHAYEVLS 64
             +C YEVLG++++ + D+++ AY+KLAL+ HPDK     L  AE A  QF+ +  AY+VLS
Sbjct:     2 KCHYEVLGVKRDASDDDLKKAYRKLALKWHPDK----NLDNAEDAAEQFKLIQAAYDVLS 57

Query:    65 DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFN 124
             DP+ERAWYD+HR  +L   ++       + +L  +F+ T +SGY D  KGFY VY ++F 
Sbjct:    58 DPQERAWYDNHREALLKGGVSGEYQDDSI-DLVQFFTVTCYSGYGDDEKGFYAVYRNVFE 116

Query:   125 KIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYD 183
              I   E  + K      D   E P  G  ES Y  V   FY YW  F T  +F W +EYD
Sbjct:   117 SIVKEEKEHSKDEE---DEEDEFPSFGESESDYDTVVHLFYGYWQSFCTRKNFAWKEEYD 173

Query:   184 VMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
                  NR  +R ME+ENKK R KA++E+NE VR+L AFV+KRDKRV
Sbjct:   174 TRQASNRWEKRAMEKENKKTRDKARKEHNELVRQLVAFVRKRDKRV 219

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q5F1R6 DNAJC21 "DnaJ homolog subfamily C member 21" [Homo sapiens (taxid:9606)]

 Score = 480 (174.0 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
 Identities = 98/225 (43%), Positives = 140/225 (62%)

Query:     6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
             +C YE LG+R++ + +E++ AY+KLAL+ HPDK + +    AEA  QF+ +  AY+VLSD
Sbjct:     2 KCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNA---AEAAEQFKLIQAAYDVLSD 58

Query:    66 PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNK 125
             P+ERAWYD+HR  +L    +       + +L  YF+ T +SGY D  KGFY VY ++F  
Sbjct:    59 PQERAWYDNHREALLKGGFDGEYQDDSL-DLLRYFTVTCYSGYGDDEKGFYTVYRNVFEM 117

Query:   126 IYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYDV 184
             I   E+  V +     + + + P  G+ +S Y  V   FY YW  F T  +F W +EYD 
Sbjct:   118 IAKEELESVLE-----EEVDDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKEEYDT 172

Query:   185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
                 NR  +R ME+ENKK+R KA++E NE VR+L AF++KRDKRV
Sbjct:   173 RQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDKRV 217

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006457 "protein folding" evidence=NAS

GO:0005840 "ribosome" evidence=NAS

GO:0003674 "molecular_function" evidence=ND

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E1C4H3 DNAJC21 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 472 (171.2 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
 Identities = 97/225 (43%), Positives = 138/225 (61%)

Query:     6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
             RC YEVLG+R++   +E++ AY++LAL+ HPDK +++     EA  QF+ +  AY+VLSD
Sbjct:     2 RCHYEVLGVRRDAAEEELKRAYRRLALRWHPDKNLENA---EEAAEQFKLIQAAYDVLSD 58

Query:    66 PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNK 125
             P+ERAWYD+HR  +L   +N       + +L  YF+ + +SGY D  KGF+ VY  +F +
Sbjct:    59 PQERAWYDNHREALL-RGVNGDYQDDSL-DLLRYFTVSCYSGYGDDEKGFFTVYRHVFEQ 116

Query:   126 IYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYDV 184
             I   E+ Y+       + + E P  G   S Y  +   FY YW  F T  +F W +EYD 
Sbjct:   117 IAKEEMEYITH-----EDIEEFPTFGYSHSDYDTIVHPFYAYWQSFCTQKNFAWKEEYDT 171

Query:   185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
                 NR  +R ME+ENKK R KAK+E NE VR+L AF++KRD+RV
Sbjct:   172 RQASNRWEKRAMEKENKKTRDKAKKERNELVRQLVAFIRKRDRRV 216

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G4N7F1 MGG_03581 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 481 (174.4 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
 Identities = 121/350 (34%), Positives = 165/350 (47%)

Query:     5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAE-ATAQFQELVHAYEVL 63
             K C YE++G+ +  T DEIR AYK+ AL+ HPD+      +  E AT +F E+  AYE+L
Sbjct:    22 KTCYYELMGIERTATEDEIRKAYKRKALELHPDR----NFNDVENATRKFAEVQTAYEIL 77

Query:    64 SDPKERAWYDSHRSQILFSDLN-SASNCGPVPNLYSYFSNT------AFSG-------YS 109
             SDP+ERAWYDSHR  IL  D + S +  G  P+ Y+    T      A  G        +
Sbjct:    78 SDPQERAWYDSHRDAILSGDPDGSGAGEGAAPSQYNNIRITTAEEIYALMGRFNSSVPMN 137

Query:   110 DSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTA-FYNYWL 168
             DS  GF+ +  + F  +   E +  +  GL      E P  G+    Y  V   FYN W 
Sbjct:   138 DSPNGFFAILDEFFGHLADEEAAACEWDGLEPP---EYPPFGSSTDDYDAVARPFYNAWS 194

Query:   169 GFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKR 228
              F+T   F W D+Y +   P+R+ RR+ME+ENKK R    R++N+ VR LAAFVKKRD R
Sbjct:   195 SFATRKSFSWRDKYRLSDAPDRRVRRLMEKENKKSRDDGIRDFNDAVRSLAAFVKKRDPR 254

Query:   229 VMDMMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEEPAWARXXXXXXXXXXXXXXXX 288
              +                                  Y  P WA+                
Sbjct:   255 YVPNTQSEAERQRVLRDSAAAQAARSRAANQEKLAAYVLPDWAQARNENEADPHEGEFSD 314

Query:   289 XXXXXKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDED 338
                  +   E  CV+C K FKSEKQ+  HE+SKKH++ +  LR     E+
Sbjct:   315 SEDQSEVE-EIECVVCAKTFKSEKQFEAHEKSKKHQKAIQQLRRQMKREN 363

GO:0043581 "mycelium development" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G74250	DNAJ heat shock N-terminal domain-containing protein; DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN- heat shock protein binding, zinc ion binding, nucleic acid binding; INVOLVED IN- protein folding; LOCATED IN- intracellular; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Zinc finger, C2H2-like (InterPro-IPR015880), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro-IPR015609), Zinc finger, U1-type (InterPro-IPR003604), Heat shock protein DnaJ, N-terminal (InterPro-IPR001623), Zinc finger, C2H2-type (I [...] (630 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G55460	Kin17 DNA-binding protein-related; Kin17 DNA-binding protein-related; FUNCTIONS IN- zinc ion bi [...] (411 aa)							•		0.929
	AT2G32600	hydroxyproline-rich glycoprotein family protein; hydroxyproline-rich glycoprotein family protei [...] (277 aa)							•		0.921
	AT4G06634	zinc finger (C2H2 type) family protein; zinc finger (C2H2 type) family protein; FUNCTIONS IN- z [...] (387 aa)							•		0.716
	AT3G60580	zinc finger (C2H2 type) family protein; zinc finger (C2H2 type) family protein; FUNCTIONS IN- t [...] (288 aa)							•		0.690
	AT3G29340	zinc finger (C2H2 type) family protein; zinc finger (C2H2 type) family protein; FUNCTIONS IN- t [...] (650 aa)							•		0.690
	AT2G45120	zinc finger (C2H2 type) family protein; zinc finger (C2H2 type) family protein; FUNCTIONS IN- t [...] (314 aa)							•		0.690
	AT5G01160	e-cadherin binding protein-related; e-cadherin binding protein-related; FUNCTIONS IN- protein b [...] (360 aa)							•		0.679
	AT1G49900	zinc finger (C2H2 type) family protein; zinc finger (C2H2 type) family protein; FUNCTIONS IN- t [...] (917 aa)							•		0.597
	AT3G49930	zinc finger (C2H2 type) family protein; zinc finger (C2H2 type) family protein; FUNCTIONS IN- t [...] (215 aa)							•		0.575
	AT3G53600	zinc finger (C2H2 type) family protein; zinc finger (C2H2 type) family protein; FUNCTIONS IN- t [...] (175 aa)							•		0.573

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	599
pfam00226	63	pfam00226, DnaJ, DnaJ domain	3e-19
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	4e-16
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	5e-16
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	3e-15
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	5e-15
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	4e-14
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	1e-13
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-13
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	4e-13
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	1e-12
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	2e-12
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-12
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	3e-12
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	4e-12
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	5e-12
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	5e-12
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	1e-11
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-11
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	1e-11
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	2e-11
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	2e-11
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	6e-11
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	1e-10
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	1e-10
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-10
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	4e-10
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	5e-10
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	6e-10
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	9e-10
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	2e-09
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	5e-09
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	2e-08
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	3e-08
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	4e-08
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	6e-08
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	1e-07
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	2e-07
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	3e-07
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	3e-06
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	8e-06
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	8e-06
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	2e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	2e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	8e-04
COG5112	126	COG5112, UFD2, U1-like Zn-finger-containing protei	0.002
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.002
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.003
pfam13892	140	pfam13892, DBINO, DNA-binding domain	0.003

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 81.4 bits (202), Expect = 3e-19
 Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 7  CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDP 66
            YE+LG+ ++ + +EI+ AY+KLAL+ HPDK          A  +F+E+  AYEVLSDP
Sbjct: 1  DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDP----AAEEKFKEINEAYEVLSDP 56

Query: 67 KERAWYD 73
          ++RA YD
Sbjct: 57 EKRAIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 72.7 bits (179), Expect = 4e-16
 Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 6  RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
             YE+LG+ ++ + DEI+ AY+KLAL+ HPDK   +   + EA  +F+E+  AYEVLSD
Sbjct: 1  TDYYEILGVPRDASLDEIKKAYRKLALKYHPDK---NPGDKEEAEEKFKEINEAYEVLSD 57

Query: 66 PK 67
          P+
Sbjct: 58 PE 59

Length = 60

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 79.8 bits (198), Expect = 5e-16
 Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 6/73 (8%)

Query: 1  MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
          MA  KR  YEVLG+ +  + DEI+ AY+KLA++ HPD+    G    EA  +F+E+  AY
Sbjct: 1  MA--KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDR--NPG--DKEAEEKFKEIKEAY 54

Query: 61 EVLSDPKERAWYD 73
          EVLSDP++RA YD
Sbjct: 55 EVLSDPQKRAAYD 67

Length = 371

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 69.9 bits (172), Expect = 3e-15
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 7  CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
            Y++LG+  + + +EI+ AY+KLAL+ HPDK         EA  +F+E+  AYEVLSD
Sbjct: 1  DYYDILGVPPDASDEEIKKAYRKLALKYHPDK----NPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 76.3 bits (188), Expect = 5e-15
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 21/122 (17%)

Query: 3   SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
             KR  YE+LG+ ++ + +EI+ +Y+KLA++ HPD+         EA   F+E   AYEV
Sbjct: 1   MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDR----NPGDKEAEELFKEAAEAYEV 56

Query: 63  LSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDL 122
           LSDPK+R  YD +  + L       S  G           + FSG+ D    F  ++ D 
Sbjct: 57  LSDPKKRGIYDQYGHEGL-------SGTG----------FSGFSGFDDIFSSFGDIFEDF 99

Query: 123 FN 124
           F 
Sbjct: 100 FG 101

Length = 366

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 73.8 bits (182), Expect = 4e-14
 Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 5/65 (7%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YE+LG+ K+ + +EI+ AY+KLA + HPD+         EA  +F+E+  AYEVLSDP++
Sbjct: 3  YEILGVSKDASEEEIKKAYRKLAKKYHPDR-----NKDKEAEEKFKEINEAYEVLSDPEK 57

Query: 69 RAWYD 73
          RA YD
Sbjct: 58 RAQYD 62

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          +R  YEVLG+ ++ + DEI+ AY+KLALQ HPD+         EA  +F+E   AYEVL 
Sbjct: 3  QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDR----NPDNPEAEQKFKEAAEAYEVLR 58

Query: 65 DPKERAWYD 73
          D ++RA YD
Sbjct: 59 DAEKRARYD 67

Length = 373

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          KR  YE+LG+ K+ + +EI+ AY+KLA + HPD+         EA  +F+E+  AYEVLS
Sbjct: 3  KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD----KEAEEKFKEINEAYEVLS 58

Query: 65 DPKERAWYD 73
          DP++RA YD
Sbjct: 59 DPEKRAAYD 67

Length = 371

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 71.0 bits (174), Expect = 4e-13
 Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 4/72 (5%)

Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
           +EKR  YEVLG+ K  T DEI+ AY+K A+Q HPDK    G  +AE   +F+E   AY+
Sbjct: 1  MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDK--NPGDKEAE--EKFKEAAEAYD 56

Query: 62 VLSDPKERAWYD 73
          VLSDP +R+ YD
Sbjct: 57 VLSDPDKRSRYD 68

Length = 386

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 8/68 (11%)

Query: 8  LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67
          LYEVL L K+CTT EI+ AY+KLA++ HPDK    G  +     +F+E+  AYEVLSDP+
Sbjct: 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDK---GGDPE-----KFKEISRAYEVLSDPE 81

Query: 68 ERAWYDSH 75
          +R  YD +
Sbjct: 82 KRKIYDEY 89

Length = 421

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 7/71 (9%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAE-ATAQFQELVHAYEV 62
           KR  YEVLG+ K  + DEI+ AY+KL+ + HPD      +++ E A  +F+E+  AYEV
Sbjct: 2  AKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPD------INKEEGADEKFKEISEAYEV 55

Query: 63 LSDPKERAWYD 73
          LSD ++RA YD
Sbjct: 56 LSDDQKRAQYD 66

Length = 376

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
          EK+  YE+LG+ +  T +EI+ AYK+L  + HPD+  +   ++ EA  +F+E+  AYEVL
Sbjct: 2  EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPE---NRKEAEQKFKEIQEAYEVL 58

Query: 64 SDPKERAWYD 73
          SDP++RA YD
Sbjct: 59 SDPQKRAMYD 68

Length = 369

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 3  SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
          +  R  YE+LGL K+ + ++I+ AY+KLA++ HPDK       + +A  +F+E+  AY V
Sbjct: 2  ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDK-----NKEPDAEEKFKEISEAYAV 56

Query: 63 LSDPKERAWYD 73
          LSD ++RA YD
Sbjct: 57 LSDAEKRAQYD 67

Length = 377

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 68.0 bits (166), Expect = 4e-12
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y+VLG+ K+ T  EI+ AY+KLA + HPD    +    A+A  +F+E+  AY+VLSD K+
Sbjct: 12 YKVLGVPKDATEAEIKKAYRKLAREYHPD----ANKGDAKAEERFKEISEAYDVLSDEKK 67

Query: 69 RAWYDSHRS 77
          R  YD  RS
Sbjct: 68 RKEYDEARS 76

Length = 389

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 67.6 bits (165), Expect = 5e-12
 Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 4/65 (6%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y +LG+ K  + +EI+ AY+KLA++ HPDK    G   AEA  +F+E+  AYEVLSD ++
Sbjct: 4  YTILGVSKTASPEEIKKAYRKLAVKYHPDK--NPG--DAEAEKRFKEVSEAYEVLSDAQK 59

Query: 69 RAWYD 73
          R  YD
Sbjct: 60 RESYD 64

Length = 391

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 67.8 bits (165), Expect = 5e-12
 Identities = 67/270 (24%), Positives = 110/270 (40%), Gaps = 43/270 (15%)

Query: 8   LYEVLGL---RKECTTDEIRSAYKKLALQRHPDKLVQSG-LSQAEATAQFQELVHAYEVL 63
           LY +LGL   R +    +I  A+KK   + HPDK    G     E    F+ +  A EVL
Sbjct: 45  LYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEF---FKLIQKAREVL 101

Query: 64  SDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF 123
            D K R  YDS       +D ++      VP    Y  +  F               +++
Sbjct: 102 GDRKLRLQYDS-------NDFDAD-----VPPPRIYTPDEFF---------------EVW 134

Query: 124 NKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYD 183
             ++  E  + KK        +  P +G  +S   +V  FY +W  F +   F  +DE  
Sbjct: 135 EPVFEREARFSKK--------QPVPSLGPSDSSLKEVEEFYEFWSNFDSWRTFEPLDEDY 186

Query: 184 VMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERK 243
                 R  +R  E +N++ R K K + N  ++ L    KKRD R+     ++ +E+++ 
Sbjct: 187 PDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRI-KSFKEQEKEMKKI 245

Query: 244 REEEKERKKRLEKERMERAKRYEEPAWARI 273
           R+ E+E   RL+     + K   +      
Sbjct: 246 RKWEREAGARLKALAALKGKAEAKNKAEIE 275

Length = 379

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 64.8 bits (157), Expect = 1e-11
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 1  MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
          M S+    YE+LG+    + +EI+ AY+KLAL+ HPD+          A  +F+E+  AY
Sbjct: 1  MMSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRN---PGDPKVAEEKFKEINEAY 57

Query: 61 EVLSDPKERAWYDSHRSQILFSDLNSASNCG 91
          E+LSDP+ RA YD   +   F   +   +  
Sbjct: 58 EILSDPERRAEYDKIGADNYFPGKSYRESAA 88

Length = 237

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 4/65 (6%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YEVLGL K  + DEI+ A++KLA++ HPDK         EA  +F+E+  AY+VLSDP++
Sbjct: 7  YEVLGLEKGASDDEIKKAFRKLAIKYHPDK----NKGNKEAEEKFKEINEAYQVLSDPQK 62

Query: 69 RAWYD 73
          +A YD
Sbjct: 63 KAQYD 67

Length = 380

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 4/69 (5%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          K+  YE+LG+ +  T +EI+ AY++LA + HPD  +  G  +AE   +F+E+  AYE+LS
Sbjct: 4  KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPD--LNPGDKEAE--QKFKEINEAYEILS 59

Query: 65 DPKERAWYD 73
          DP++RA YD
Sbjct: 60 DPQKRAQYD 68

Length = 386

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 30/65 (46%), Positives = 44/65 (67%), Gaps = 5/65 (7%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YE+LG+ +  + DEI+SAY+KLAL+ HPD+  + G     A  +F ++  AY VLSD ++
Sbjct: 5  YELLGVSRTASADEIKSAYRKLALKYHPDRNKEKG-----AAEKFAQINEAYAVLSDAEK 59

Query: 69 RAWYD 73
          RA YD
Sbjct: 60 RAHYD 64

Length = 371

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 42/106 (39%), Positives = 56/106 (52%), Gaps = 6/106 (5%)

Query: 5   KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
           KR  YEVLG+ +    DEI+ AY+KLAL+ HPDK         EA   F+E+  AYEVLS
Sbjct: 2   KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDK----NPDNKEAEEHFKEVNEAYEVLS 57

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSD 110
           +  +R  YD      + S  ++AS  GP         N  FS ++D
Sbjct: 58  NDDKRRRYDQFGHAGVGS--SAASGGGPGYGGGGGDFNDIFSAFND 101

Length = 397

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 64.2 bits (156), Expect = 6e-11
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 17/118 (14%)

Query: 6   RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
           R  Y++LG+ K    +EI+SAY+KLA++ HPDK         E+  +F+E   AYE+L D
Sbjct: 4   RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDK----NKGNKESEEKFKEATEAYEILRD 59

Query: 66  PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF 123
           PK+R  YD       F      +  G        F   A++ +SD    F  ++ D F
Sbjct: 60  PKKRQAYDQ------FGKAGVNAGAGG-------FGQGAYTDFSDIFGDFGDIFGDFF 104

Length = 372

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y +LG+ +  +  EI+ AY+KLA + HPD  V       EA  +F+E+  AYEVLSDP++
Sbjct: 6  YGLLGVSRNASDAEIKRAYRKLARELHPD--VNPD---EEAQEKFKEISVAYEVLSDPEK 60

Query: 69 RAWYD 73
          R   D
Sbjct: 61 RRIVD 65

Length = 378

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 16/119 (13%)

Query: 5   KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
           KR  YE+LGL K  + DEI+ AY+K+A++ HPDK         EA + F+E   AYEVL 
Sbjct: 2   KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDK----NKGNKEAESIFKEATEAYEVLI 57

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF 123
           D  +RA YD           ++A   G     +S      FSG+SD  + F  ++   F
Sbjct: 58  DDNKRAQYDRFG--------HTAFEGGGGFEGFS----GGFSGFSDIFEDFGDIFDSFF 104

Length = 365

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 5/65 (7%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YE+LG+ ++   DE++ AY++LA + HPD   + G     A  +F+E+  AYEVLSDP+ 
Sbjct: 6  YEILGVSRDADKDELKRAYRRLARKYHPDVNKEPG-----AEDRFKEINRAYEVLSDPET 60

Query: 69 RAWYD 73
          RA YD
Sbjct: 61 RARYD 65

Length = 374

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 61.5 bits (149), Expect = 4e-10
 Identities = 46/139 (33%), Positives = 61/139 (43%), Gaps = 12/139 (8%)

Query: 5   KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
           K+  YEVLG+ K  +  EIR AY+KLA Q HPD           A  +  E+  A +VL 
Sbjct: 3   KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPD-----AHDKMVEINEAADVLL 57

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFN 124
           D  +R  YD             +SN G   +L   FSN   SG+S     F  ++SD F 
Sbjct: 58  DKDKRKQYDQFGHAAFDGSSGFSSNFGDFEDL---FSNMGSSGFSS----FTNIFSDFFG 110

Query: 125 KIYSVEVSYVKKLGLGLDV 143
              S      K   + LD+
Sbjct: 111 SNKSDYQRSTKGQSVSLDI 129

Length = 372

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 61.3 bits (149), Expect = 5e-10
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
           K+  YE+LG+ +  T +EI+ AY++LA + HPD          EA  +F+E+  AY+VL
Sbjct: 1  AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDF-----NKNPEAEEKFKEINEAYQVL 55

Query: 64 SDPKERAWYD 73
          SDP++R  YD
Sbjct: 56 SDPEKRKLYD 65

Length = 382

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 60.3 bits (146), Expect = 6e-10
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y +LG+ K  + DEI+ A+KKLA + HPD           A  +F+E+  AY VLSDP++
Sbjct: 7  YAILGVPKNASQDEIKKAFKKLARKYHPDV-----NKSPGAEEKFKEINEAYTVLSDPEK 61

Query: 69 RAWYDSHRSQILFSDLNSASNCGPVP 94
          R  YD++ +        SA   GP P
Sbjct: 62 RRIYDTYGTTA-----ASAGWQGPPP 82

Length = 291

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 60.5 bits (147), Expect = 9e-10
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 8  LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67
           Y+ LG+ K+ + DEI+ AY+KL+ + HPD   + G     A  +++E+  AYE LSDP+
Sbjct: 6  YYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPG-----AEEKYKEVQEAYETLSDPQ 60

Query: 68 ERAWYD 73
          +RA YD
Sbjct: 61 KRAAYD 66

Length = 380

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 17/27 (62%), Positives = 19/27 (70%)

Query: 298 EFYCVLCGKKFKSEKQWTNHEQSKKHK 324
           +FYCV C K FKSE    NH +SKKHK
Sbjct: 1   QFYCVACDKYFKSENALENHLKSKKHK 27

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 3  SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
          +EKR  YEVLG+ +     EI+ AY+KLA + HPD        +  A  +F+E+  AY V
Sbjct: 2  AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDV-----SEEEGAEEKFKEISEAYAV 56

Query: 63 LSDPKERAWYD 73
          LSD ++R  YD
Sbjct: 57 LSDDEKRQRYD 67

Length = 378

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 30/70 (42%), Positives = 47/70 (67%), Gaps = 7/70 (10%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAE-ATAQFQELVHAYEVL 63
          KR  YEVLG+ +  + DE++ AY+KLA + HPD      +++A  A  +F+E+  AY+ L
Sbjct: 3  KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPD------VNKAPDAEDKFKEVKEAYDTL 56

Query: 64 SDPKERAWYD 73
          SDP+++A YD
Sbjct: 57 SDPQKKAHYD 66

Length = 371

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 26/65 (40%), Positives = 45/65 (69%), Gaps = 3/65 (4%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y++LG+ +  + ++I+ A+++LA + HPD    +   +AEA  +F+E+  AYEVLSDP++
Sbjct: 6  YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN---KAEAEEKFKEISEAYEVLSDPQK 62

Query: 69 RAWYD 73
          R  YD
Sbjct: 63 RRQYD 67

Length = 365

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y+ LG+  + + +EI+ AY+KLA + HPD     G   AE   +F+ +  A++VLSDP +
Sbjct: 12 YKELGVSSDASAEEIKKAYRKLARELHPDA--NPGDPAAE--ERFKAVSEAHDVLSDPAK 67

Query: 69 RAWYDSHRS 77
          R  YD  R 
Sbjct: 68 RKEYDETRR 76

Length = 392

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 54.0 bits (131), Expect = 6e-08
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 9   YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQ---AEATAQFQELVHAYEVLSD 65
           Y+VLG+ +     EI+ AY+KL  + HPDKLV  GL       A  + QE+  AYE++  
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIK- 261

Query: 66  PKERAW 71
            K++ +
Sbjct: 262 -KQKGF 266

Length = 267

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 8/77 (10%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y ++G++       I++AY++LA + HPD        + +A A+F+E+  A+EVLSD + 
Sbjct: 7  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-----KEPDAEARFKEVAEAWEVLSDEQR 61

Query: 69 RAWYDS---HRSQILFS 82
          RA YD    HR+   F+
Sbjct: 62 RAEYDQLWQHRNDPQFN 78

Length = 306

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 54.1 bits (129), Expect = 2e-07
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          KR  YEVLG+ ++    EI+ A++KLA + HPD+         +A + F E+  A +VLS
Sbjct: 1  KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDR-----NKAPDAASIFAEINEANDVLS 55

Query: 65 DPKERAWYDSH 75
          +PK+RA YD +
Sbjct: 56 NPKKRANYDKY 66

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 299 FYCVLCGKKFKSEKQWTNHEQSKKH 323
           FYC LC   F SE Q  +H + KKH
Sbjct: 1   FYCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y++LG+ K  +  +++ AY KLA Q HPD          +A  +F+E+  AY+VL D ++
Sbjct: 6  YQILGVSKTASQADLKKAYLKLAKQYHPDT-----TDAKDAEKKFKEINAAYDVLKDEQK 60

Query: 69 RAWYD 73
          RA YD
Sbjct: 61 RAAYD 65

Length = 372

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 42.6 bits (101), Expect = 8e-06
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 299 FYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL 330
           FYC LC   F  E     H + KKHK+ V   
Sbjct: 4   FYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 48.1 bits (114), Expect = 8e-06
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YE+L + K    + I+ +Y+KLAL+ HPD+         EA  +F+ +  AY VLSD K+
Sbjct: 6  YEILEVEKHSNQETIKKSYRKLALKYHPDR----NAGDKEAEEKFKLINEAYGVLSDEKK 61

Query: 69 RAWYDSHRSQIL 80
          RA YD +  + L
Sbjct: 62 RALYDRYGKKGL 73

Length = 369

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 9   YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQ-SGLSQAEATAQFQELVHAYEVLSDPK 67
           YE+LG+ ++ +  +I+  Y+ L+++ HPDK        ++E   +++ +  AY +L+D K
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 68  ERAWY 72
            R  Y
Sbjct: 161 RRENY 165

Length = 610

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 26/129 (20%)

Query: 183 DVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIER 242
            ++       +  M  E K        EY++ VREL       D+R       K EE   
Sbjct: 216 SLLRTVKPPPKPPMTPEEKD------DEYDQRVRELTF-----DRRAQPTDRTKTEE--E 262

Query: 243 KREEEKERKKRLEKERMER------AKRYEEPAWARIDD-------EGDNEVGNEEGLEE 289
             +EE ER K+LE ER+ R          EE +    DD       + D+  G  +G E+
Sbjct: 263 LAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEED 322

Query: 290 EEIEKKRSE 298
           EE E+   +
Sbjct: 323 EEEEEDGVD 331

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 42.3 bits (99), Expect = 8e-04
 Identities = 56/292 (19%), Positives = 95/292 (32%), Gaps = 36/292 (12%)

Query: 216 RELAAFVKKRDKRVMDMMVKKNEEIERKREEEKERKKRLEKERMERAKRYEEPAWARIDD 275
           +++  +VK++  R     V    ++ +    E E       E  ER    E         
Sbjct: 606 KQIELWVKEQLSRRPVAKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGG 665

Query: 276 EGDNEVGNEEGLEEEEIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFV 335
           E + E   E   E E   +  +E       +K + E +     +   HK +         
Sbjct: 666 EAEQEGETETKGENESEGEIPAE-------RKGEQEGEGEIEAKEADHKGETEAEEVEHE 718

Query: 336 DEDEVMADFGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEV 395
            E E      E + E  E GE         E E   G G   G  +VE+E     D  E 
Sbjct: 719 GETEAEGTEDEGEIETGEEGE-------EVEDE---GEGEAEGKHEVETE----GDRKET 764

Query: 396 NEVDDRFGKEDEDEDE-----------DADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKT 444
               +   +  EDEDE             D+            +  ++     + E    
Sbjct: 765 EHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQAD 824

Query: 445 EAHVENEIGESEFMEYDNCKSTRRKNKKDRGKKSGGEAAKGDRDGFKSTNEE 496
           +  V++E GE E    +  ++     + ++G   GG +  GD +  +   EE
Sbjct: 825 DTEVKDETGEQELNAENQGEAK----QDEKGVDGGGGSDGGDSEEEEEEEEE 872

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|227443 COG5112, UFD2, U1-like Zn-finger-containing protein [General function prediction only]

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 244 REEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKR---SEFY 300
           R + K +K+R  + R++R + +      R  D+  N++  +E  ++   + +     + Y
Sbjct: 3   RSDTKRKKRRSNRLRIKRTRLF-----GRDLDQIKNDLSTKESQKKLPYDPELPGLGQHY 57

Query: 301 CVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDG-EVEELGERFK 359
           C+ C + F +EK    H++ K HK +  +LRE    +++  A  G   G E E      K
Sbjct: 58  CIECARYFITEKALMEHKKGKVHKRRAKELREVPYTQEDAEAAVGLTVGPEKESNEALLK 117

Query: 360 DNVGV 364
           +++  
Sbjct: 118 EHLDS 122

Length = 126

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 11/75 (14%)

Query: 190 RKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEKE 249
           RK  +  EEE +K+ K A+ E  E  +E     KK +K+      K+  E +  +   +E
Sbjct: 259 RKVDKTREEEEEKILKAAEEERQEEAQE-----KKEEKK------KEEREAKLAKLSPEE 307

Query: 250 RKKRLEKERMERAKR 264
           ++K  EKER ++A++
Sbjct: 308 QRKLEEKERKKQARK 322

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 194 RVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEKERKKR 253
            ++ + N +L  +       T  E+      +        +KK  E   K+ EE++++K+
Sbjct: 375 SIIFKHNPELAARLAAFLELTEEEIEFLTGSKKATKK---IKKIVEKAEKKREEEKKEKK 431

Query: 254 LEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRS 297
            +    ++ +  EE    + ++E + E    E  +EEE EKK+ 
Sbjct: 432 KKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 22/68 (32%)

Query: 200 NKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEKERKKRLEKERM 259
            K  + +AKR     +RE+  F KK +K                  EE+E +KR EKE +
Sbjct: 60  MKDTQLRAKR----LMREMLLFWKKNEK------------------EERELRKRAEKEAL 97

Query: 260 ERAKRYEE 267
           E+AK+ EE
Sbjct: 98  EQAKKEEE 105

DBINO is a DNA-binding domain found on global transcription activator SNF2L1 proteins and chromatin re-modelling proteins. Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	599
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	100.0
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	100.0
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.89
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.84
PRK14288	369	chaperone protein DnaJ; Provisional	99.77
PRK14296	372	chaperone protein DnaJ; Provisional	99.76
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.76
PRK14286	372	chaperone protein DnaJ; Provisional	99.74
PRK14285	365	chaperone protein DnaJ; Provisional	99.72
PRK14279	392	chaperone protein DnaJ; Provisional	99.72
PRK14276	380	chaperone protein DnaJ; Provisional	99.71
PRK14287	371	chaperone protein DnaJ; Provisional	99.71
PRK14301	373	chaperone protein DnaJ; Provisional	99.71
PRK14282	369	chaperone protein DnaJ; Provisional	99.71
PRK14294	366	chaperone protein DnaJ; Provisional	99.71
PRK14295	389	chaperone protein DnaJ; Provisional	99.7
PRK14297	380	chaperone protein DnaJ; Provisional	99.7
PRK14298	377	chaperone protein DnaJ; Provisional	99.7
PRK14277	386	chaperone protein DnaJ; Provisional	99.7
PRK14278	378	chaperone protein DnaJ; Provisional	99.69
PRK14299	291	chaperone protein DnaJ; Provisional	99.69
PRK10767	371	chaperone protein DnaJ; Provisional	99.69
PRK14291	382	chaperone protein DnaJ; Provisional	99.68
PRK14280	376	chaperone protein DnaJ; Provisional	99.68
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.68
PRK14284	391	chaperone protein DnaJ; Provisional	99.66
PRK14283	378	chaperone protein DnaJ; Provisional	99.66
PRK14281	397	chaperone protein DnaJ; Provisional	99.66
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.65
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.65
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.64
PRK14300	372	chaperone protein DnaJ; Provisional	99.63
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.62
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.61
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.6
PRK14290	365	chaperone protein DnaJ; Provisional	99.6
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.6
PRK14289	386	chaperone protein DnaJ; Provisional	99.59
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.59
PRK14292	371	chaperone protein DnaJ; Provisional	99.56
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.56
PRK14293	374	chaperone protein DnaJ; Provisional	99.55
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.54
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.5
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.49
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.46
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.41
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.39
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.37
PHA03102	153	Small T antigen; Reviewed	99.35
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.34
PRK01356	166	hscB co-chaperone HscB; Provisional	99.33
PRK05014	171	hscB co-chaperone HscB; Provisional	99.31
PRK03578	176	hscB co-chaperone HscB; Provisional	99.27
PRK00294	173	hscB co-chaperone HscB; Provisional	99.23
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.18
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.07
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.07
PTZ00100	116	DnaJ chaperone protein; Provisional	98.99
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.93
PHA02624	647	large T antigen; Provisional	98.91
PRK01773	173	hscB co-chaperone HscB; Provisional	98.81
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.67
KOG0724	335	consensus Zuotin and related molecular chaperones	98.64
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.57
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.46
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.08
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.96
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.7
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	97.61
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	97.55
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	97.0
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	96.8
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	96.54
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	96.2
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	95.85
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.33
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	95.1
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	94.95
KOG0431	453	consensus Auxilin-like protein and related protein	94.93
PLN02748	468	tRNA dimethylallyltransferase	94.92
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	93.57
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	93.39
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	93.23
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	93.18
KOG4727	193	consensus U1-like Zn-finger protein [General funct	93.01
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	91.38
KOG3032	264	consensus Uncharacterized conserved protein [Funct	91.3
smart00355	26	ZnF_C2H2 zinc finger.	90.06
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	87.29
KOG2837	309	consensus Protein containing a U1-type Zn-finger a	87.18
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	84.47
PHA02768	55	hypothetical protein; Provisional	84.44
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	84.09
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	83.88
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	81.4
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	80.78
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	80.35
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	80.08

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-90  Score=730.83  Aligned_cols=483  Identities=39%  Similarity=0.600  Sum_probs=361.4

Q ss_pred             CCCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551            2 ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (599)
Q Consensus         2 ~~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (599)
                      +..++|||+||||.++|++.+||++||+|||+||||||  | +..++|+++|+.|+.||+|||||++|+|||+|+.+||+
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDkn--p-d~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~   80 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKN--P-DRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR   80 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCC--C-ccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence            46789999999999999999999999999999999998  3 37899999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccchhhhHHHHhhhhhHHHHHhhcCCCcccccCccCCCCCCCccchh
Q 007551           82 SDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT  161 (599)
Q Consensus        82 ~~~~~~~~~~~~~dl~~~Fs~s~f~gf~d~~~gFy~vy~~vF~~i~~eE~~f~~~~g~~~s~~~~~P~fGd~~s~~e~V~  161 (599)
                      +.+...  +..++++|+||+++||.||+++..|||.||++||..++..++.|+.      +....+|.||++.|+|+.|.
T Consensus        81 ~~~s~~--~~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~~~~~~e~~~~~------d~~~~ap~fg~~~t~ye~~~  152 (508)
T KOG0717|consen   81 GKNSDT--GVQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFNALASDELPFLG------DSKLLYPLFGYSTTDYEQVV  152 (508)
T ss_pred             CCCCcc--ccchHHHHHHhhhhhhcccccccchhHHHHHHHHHHHhhhhhhhcc------CCccccccccCCCCcHHHHH
Confidence            876532  4678999999999999999999999999999999999998887754      45567999999999999999


Q ss_pred             hhhhhhhcceeeecccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHhHHHHH
Q 007551          162 AFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIE  241 (599)
Q Consensus       162 ~FY~~W~~F~T~RsFsw~Deyd~~~a~nR~~RR~mEKENkK~R~k~kKE~n~~VR~LV~~vkkRDpRv~~~~~~~~~e~e  241 (599)
                      .||.||++|+|.++|+|+|+|+++++.+|..+|+|+++|+++|+.+|++||.+||.||.||++|||||++++.++..+.+
T Consensus       153 ~fY~~W~afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvkKrDpRvk~~l~~k~~E~~  232 (508)
T KOG0717|consen  153 PFYQFWLAFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQYARQEYNETVRNLVGFVKKRDPRVKAMLELKDAEAY  232 (508)
T ss_pred             HHHHHHHhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997666666666


Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHhcccchhhhhhccccCcccCCCcc-hhHHHHhhccCccccccccccccChHHHHHh
Q 007551          242 RKREEEKERKKRLEKERM---ERAKRYEEPAWARIDDEGDNEVGNEEG-LEEEEIEKKRSEFYCVLCGKKFKSEKQWTNH  317 (599)
Q Consensus       242 rkk~ee~~rk~~~~k~r~---e~a~~~~e~~w~~~~e~e~~~~~~~~e-~~ee~~e~~~~~~~C~~C~K~F~s~~~~~nH  317 (599)
                      +.+.++ .|+.+...+++   .+...+...+|+...+.++.+....++ .++++.+.+.+.+||+||+|+|+|++||+||
T Consensus       233 r~kqe~-~Rk~~~~~r~e~~e~r~n~~e~~~~~~~~e~ed~~e~~~d~~~e~de~d~~ge~lyC~vCnKsFKseKq~kNH  311 (508)
T KOG0717|consen  233 RSKQEE-SRKQQLRKRREYAETRKNNGEGSEEALKEEIEDELEKSSDDETESDEADNEGEVLYCVVCNKSFKSEKQLKNH  311 (508)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhhccccchhhhhhhhcCCceEEeeccccccchHHHHhh
Confidence            633333 33333322222   222233333444433333222221111 1222233445559999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHHhhhhhhHhhhccCCchhhhhhhhhhhccCCcchhhccCCCCCCCCCCCcccccccccCCccccc
Q 007551          318 EQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNE  397 (599)
Q Consensus       318 ~~SKKHk~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~~e~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (599)
                      ++||||+++|.+|+++|.+|++.+..-                   +.+              ..+-++|        ++
T Consensus       312 EnSKKHkenv~eLrqemEEEe~d~~~~-------------------qae--------------e~e~e~~--------se  350 (508)
T KOG0717|consen  312 ENSKKHKENVAELRQEMEEEEEDEAQG-------------------QAE--------------ENELEDF--------SE  350 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhh-------------------ccc--------------cchhhhh--------hh
Confidence            999999999999999998776210000                   000              0012222        11


Q ss_pred             cccccCCCCCCcccchhhhHHHHHHHhhccccccccccccccccccccccccccCCCccccccccchhhhhhhhhccCCC
Q 007551          398 VDDRFGKEDEDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKNKKDRGKK  477 (599)
Q Consensus       398 ~~~~~~~~~~~~~e~~~de~~~le~m~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~n~k~~~~~~~~~k~~~  477 (599)
                      ++.+   ++.++.+....++....-|+|+..|-.....+-...+-+.+  ++.+.+..++.+.++.|.++..+ +.|.-.
T Consensus       351 ee~~---~d~ses~~~n~~~~~~k~~~s~d~n~~~n~~~E~~d~~~e~--~e~d~dtae~ee~d~qk~~~~~k-~~K~~~  424 (508)
T KOG0717|consen  351 EEPE---DDPSESEYKNKEKDRDKKNVSFDENEKVNTFAEISDEDFEP--AEEDGDTAESEEFDQQKNKSVNK-KIKPCD  424 (508)
T ss_pred             hccc---cCCCCCchhhhHhhhhhcccchhhhhhhccccccccCCCcc--cccccccccchhhccccccchhh-hccccc
Confidence            1112   12333445557889999999999997776555444432333  35566677788999999874443 333211


Q ss_pred             CCCCCCCCCCCCCCCCCccCCCCCCCCccccCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCccccchhhcccCCCC
Q 007551          478 SGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSEKDPKIPDQPVDGKGTKKDRKAKLKNSSKG  557 (599)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~k~~skg  557 (599)
                          .+++++..++.+....+...+..++.+||+.                                             
T Consensus       425 ----D~k~~a~kvk~pk~~~~kd~~k~a~~~p~~~---------------------------------------------  455 (508)
T KOG0717|consen  425 ----DKKDEAKKVKKPKGKVTKDNKKPATVAPSSQ---------------------------------------------  455 (508)
T ss_pred             ----cchhhhhhccCCCCCCCCccCCCccCCCCCC---------------------------------------------
Confidence                3444455555444333333344445544441                                             


Q ss_pred             CccccccccCCchhhhhcccchhhhhhhhhhcCCCCccccc
Q 007551          558 NKTKTASKNSSNVCEKCGQEFETRNKLHKHLGDTGHASLKF  598 (599)
Q Consensus       558 ~k~k~~~~~~~~~c~~c~~~f~sr~kl~~hl~~~gh~~~k~  598 (599)
                            ...+-.+|.||++.|+||||||.||..||||++..
T Consensus       456 ------~psa~~~C~tCr~~FdSRnkLF~Hlk~tgHa~~~~  490 (508)
T KOG0717|consen  456 ------TPSALISCTTCRESFDSRNKLFAHLKKTGHARLPS  490 (508)
T ss_pred             ------CcchhHhhhhhhhhccchhHHHHHhhhcCCeeccc
Confidence                  11245799999999999999999999999999864

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-33  Score=277.45  Aligned_cols=191  Identities=30%  Similarity=0.440  Sum_probs=162.9

Q ss_pred             ccCcccccCcCC---CCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551            5 KRCLYEVLGLRK---ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (599)
Q Consensus         5 ~~d~YeVLGV~~---~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (599)
                      +.|+|.+|||+.   .|++.+|.+|+++.+++||||+....|.  ......|++|+.||+||+|+..|..||+.....  
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~--~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~a--  117 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGN--KGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDA--  117 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCC--CCcHHHHHHHHHHHHHhccHHHHhhcccccccc--
Confidence            478999999986   7999999999999999999999955442  356789999999999999999999999963211  


Q ss_pred             cCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccchhhhHHHHhhhhhHHHHHhhcCCCcccccCccCCCCCCCccchh
Q 007551           82 SDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT  161 (599)
Q Consensus        82 ~~~~~~~~~~~~~dl~~~Fs~s~f~gf~d~~~gFy~vy~~vF~~i~~eE~~f~~~~g~~~s~~~~~P~fGd~~s~~e~V~  161 (599)
                              ..+.|.             ......||.+|+++|++-    +.|        +..+++|++|.++++...|.
T Consensus       118 --------dvppp~-------------~~t~~~Ffe~w~pvFe~e----arF--------SkKqPvPsLg~~dss~keVe  164 (379)
T COG5269         118 --------DVPPPR-------------IYTPDEFFEVWEPVFERE----ARF--------SKKQPVPSLGPSDSSLKEVE  164 (379)
T ss_pred             --------CCCCcc-------------CCCchhHHHHHHHHHHhh----hhc--------cccCCCCCCCCchhHHHHHH
Confidence                    011111             122456999999999753    344        34578999999999999999


Q ss_pred             hhhhhhhcceeeecccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhH
Q 007551          162 AFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDM  232 (599)
Q Consensus       162 ~FY~~W~~F~T~RsFsw~Deyd~~~a~nR~~RR~mEKENkK~R~k~kKE~n~~VR~LV~~vkkRDpRv~~~  232 (599)
                      .||.||++|.|||+|.++|+--..+.++|..+|..|+.|+..|++.+...|.+|+.||..+.+|||||+-.
T Consensus       165 ~FY~FW~nFdSWRtFE~lded~pdd~e~rD~kry~e~KNr~~r~k~K~~DnaRl~~LV~~A~~~DPRIK~f  235 (379)
T COG5269         165 EFYEFWSNFDSWRTFEPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSF  235 (379)
T ss_pred             HHHHHHHhccccccccchhhhcCcchhhhhhHHHHHhhhHHHHHhhhchhHHHHHHHHHHHHhcCcchhhH
Confidence            99999999999999999999888889999999999999999999999999999999999999999999654

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.4e-23  Score=222.19  Aligned_cols=74  Identities=46%  Similarity=0.745  Sum_probs=68.2

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (599)
                      .++|||+||||+++||.+|||+|||+||++||||+|  ++  .++|.++|++|++||+|||||++|+.||.++...+.
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n--~g--~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRN--PG--DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CC--CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            478999999999999999999999999999999999  33  468999999999999999999999999999876544

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=3e-21  Score=200.33  Aligned_cols=75  Identities=44%  Similarity=0.709  Sum_probs=69.7

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhcc
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS   82 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~   82 (599)
                      ..+|||+||||+++|+..+||+|||||||+||||||  |  +.+.|.+.|+.|+.||+|||||.+|+.||.+|+.+|..
T Consensus        14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkN--p--ddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~   88 (336)
T KOG0713|consen   14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKN--P--DDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKD   88 (336)
T ss_pred             cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC--C--CCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcc
Confidence            468999999999999999999999999999999999  3  34679999999999999999999999999999887764

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=5.5e-19  Score=189.08  Aligned_cols=71  Identities=39%  Similarity=0.648  Sum_probs=64.8

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (599)
                      ..|||+||||+++||.++||+|||+||++||||+|  ++  .+.|.++|++|++||+|||||.+|+.||.+|...
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~--~~--~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~   72 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRN--AG--DKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG   72 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--ccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccc
Confidence            47999999999999999999999999999999999  32  2458999999999999999999999999998643

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=6.9e-19  Score=188.49  Aligned_cols=72  Identities=39%  Similarity=0.545  Sum_probs=65.7

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (599)
                      .+|||+||||+++||..+||+|||+||++||||+|  +.   ..|.++|++|++||+|||||.+|+.||.+|...+.
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n--~~---~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~   74 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN--KS---PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFD   74 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC---chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhc
Confidence            57999999999999999999999999999999999  22   35889999999999999999999999999876543

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=6.7e-19  Score=184.55  Aligned_cols=75  Identities=41%  Similarity=0.685  Sum_probs=68.5

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhccCC
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDL   84 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~~~   84 (599)
                      .+.||+||||.++||..+||+|||+||++||||||  |+     |.++|++|+.||+|||||.+|..||.+|++.+.+++
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn--~~-----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~   75 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKN--PD-----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGG   75 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCC--cc-----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccC
Confidence            46799999999999999999999999999999999  43     789999999999999999999999999998886544


Q ss_pred             CC
Q 007551           85 NS   86 (599)
Q Consensus        85 ~~   86 (599)
                      .+
T Consensus        76 ~~   77 (337)
T KOG0712|consen   76 GG   77 (337)
T ss_pred             CC
Confidence            33

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=3.7e-18  Score=182.88  Aligned_cols=72  Identities=43%  Similarity=0.770  Sum_probs=65.6

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (599)
                      .+|||+||||+++||.++||+|||+||++||||+|  ++  .++|.++|++|++||+||+||.+|+.||.++...+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~   74 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKN--KG--NKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV   74 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--chHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence            47999999999999999999999999999999998  32  34689999999999999999999999999987554

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=8.7e-18  Score=179.64  Aligned_cols=72  Identities=47%  Similarity=0.745  Sum_probs=65.5

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (599)
                      .+|||+||||+++||.++||+|||+||++||||+|  ++  .+.|.++|++|++||+||+||.+|+.||.++...+
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~   73 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKN--KG--NKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF   73 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--CHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence            47999999999999999999999999999999998  32  34688999999999999999999999999987543

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=9.4e-18  Score=180.94  Aligned_cols=70  Identities=37%  Similarity=0.657  Sum_probs=64.6

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (599)
                      .+|||+||||+++||..+||+|||+||++||||+|  ++  .+.|.++|+.|++||+|||||.+|+.||.+|..
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~   77 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDAN--PG--DPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL   77 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--ChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence            47999999999999999999999999999999999  32  346899999999999999999999999999864

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.2e-17  Score=179.42  Aligned_cols=72  Identities=38%  Similarity=0.580  Sum_probs=65.3

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (599)
                      .+|||+||||+++||.++||+|||+||++||||+|.  .   +.|.++|+.|++||+||+||.+|+.||.+|...+.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~--~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~   74 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK--E---PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGAN   74 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcccc
Confidence            479999999999999999999999999999999993  2   35889999999999999999999999999875443

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.3e-17  Score=178.75  Aligned_cols=70  Identities=41%  Similarity=0.709  Sum_probs=64.3

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (599)
                      ..|||+||||+++||.++||+|||+||++||||+|.  .   +.|.++|+.|++||+||+||.+|+.||.+|...
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~--~---~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~   72 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK--A---PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTD   72 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcc
Confidence            579999999999999999999999999999999983  1   368899999999999999999999999998643

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.8e-17  Score=177.77  Aligned_cols=72  Identities=46%  Similarity=0.740  Sum_probs=65.3

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (599)
                      ..|||+||||+++||.++||+|||+||++||||++  ++  ..+|.++|+.|++||+||+||.+|+.||.++...+
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~   74 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRN--PD--NPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV   74 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcC--CC--ChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence            47999999999999999999999999999999999  32  24688999999999999999999999999986543

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=2.1e-17  Score=176.92  Aligned_cols=72  Identities=43%  Similarity=0.725  Sum_probs=65.3

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (599)
                      .+|||+||||+++||.++||+|||+||++||||+|  ++ ....|.++|++|++||+|||||.+|+.||.++...
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~--~~-~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~   74 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRH--PE-NRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG   74 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--cc-chhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence            57999999999999999999999999999999998  32 23468999999999999999999999999987643

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.7e-17  Score=177.48  Aligned_cols=72  Identities=46%  Similarity=0.790  Sum_probs=65.4

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (599)
                      .+|||+||||+++||..+||+|||+||++||||++  ++  .+.|.++|+.|++||+||+||.+|+.||.+|...+
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~   74 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRN--PG--DKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL   74 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--chHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence            58999999999999999999999999999999999  32  24688999999999999999999999999986543

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=2.3e-17  Score=177.71  Aligned_cols=72  Identities=43%  Similarity=0.685  Sum_probs=64.7

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhh----ccchhh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS----HRSQIL   80 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs----~r~~~l   80 (599)
                      ..|||+||||+++||..+||+|||+||++||||++  ++  ...|.++|+.|++||+||+||.+|+.||.    ++...+
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~   83 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDAN--KG--DAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF   83 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence            36999999999999999999999999999999998  32  24689999999999999999999999998    776544

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=2.4e-17  Score=177.00  Aligned_cols=72  Identities=46%  Similarity=0.774  Sum_probs=65.6

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (599)
                      ..|||+||||+++||.++||+|||+||++||||++  ++  .+.|.++|+.|++||+||+||.+|+.||.+|...+
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~   74 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKN--KG--NKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF   74 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--cHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence            47999999999999999999999999999999999  32  24689999999999999999999999999987544

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=2.2e-17  Score=177.26  Aligned_cols=71  Identities=42%  Similarity=0.707  Sum_probs=64.7

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (599)
                      ..+|||+||||+++||.++||+|||+||++||||+|.  .   ..|.++|+.|++||+||+||.+|+.||.+|...
T Consensus         3 ~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~--~---~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   73 (377)
T PRK14298          3 TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK--E---PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAG   73 (377)
T ss_pred             CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC--C---hhHHHHHHHHHHHHHHhcchHhhhhhhhcCccc
Confidence            3479999999999999999999999999999999982  1   457899999999999999999999999998644

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=3.2e-17  Score=176.42  Aligned_cols=72  Identities=43%  Similarity=0.761  Sum_probs=65.6

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (599)
                      ..|||+||||+++||.++||+|||+||++||||++  ++  .+.|+++|+.|++||+|||||.+|+.||.+|...+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~   75 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLN--PG--DKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF   75 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence            47999999999999999999999999999999999  32  24688999999999999999999999999987544

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=3.8e-17  Score=175.51  Aligned_cols=68  Identities=41%  Similarity=0.646  Sum_probs=63.4

Q ss_pred             cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (599)
Q Consensus         6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (599)
                      +|||+||||+++||.++||+|||+||++||||+|  +   .+.|.++|+.|++||+||+||.+|+.||.+|..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~--~---~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVN--P---DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCC--C---cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            7999999999999999999999999999999999  3   246899999999999999999999999998763

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=4.9e-17  Score=168.95  Aligned_cols=70  Identities=40%  Similarity=0.646  Sum_probs=64.3

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (599)
                      ..|||+||||+++||.++||+|||+||++||||++.     ...|.++|+.|++||+||+||.+|+.||.++...
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~   72 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-----SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA   72 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence            479999999999999999999999999999999982     2458899999999999999999999999988653

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=4.2e-17  Score=174.57  Aligned_cols=71  Identities=49%  Similarity=0.817  Sum_probs=64.6

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (599)
                      .+|||+||||+++||.++||+|||+||++||||++  ++  ...|.++|+.|++||+||+||.+|+.||.++...
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~   73 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRN--PG--DKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAA   73 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--cHHHHHHHHHHHHHHHHhcchhhhhHhhhccccc
Confidence            57999999999999999999999999999999998  32  2458899999999999999999999999987643

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=6.6e-17  Score=173.85  Aligned_cols=70  Identities=41%  Similarity=0.724  Sum_probs=64.3

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (599)
                      ++|||+||||+++||.++||+|||+||++||||+|  ++   +.|.++|+.|++||+|||||.+|+.||.++...
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~   71 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFN--KN---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA   71 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence            57999999999999999999999999999999999  32   457899999999999999999999999987643

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=6.2e-17  Score=173.72  Aligned_cols=71  Identities=45%  Similarity=0.649  Sum_probs=64.7

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (599)
                      .+|||+||||+++||.++||+|||+||++||||+|.  .   ..|.++|++|++||+|||||.+|+.||.+|...+
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~--~---~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~   73 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK--E---EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGP   73 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---ccHHHHHHHHHHHHHHhccHhHHHHHHhcCcccc
Confidence            479999999999999999999999999999999983  2   3588999999999999999999999999987543

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.68  E-value=3.3e-17  Score=178.10  Aligned_cols=68  Identities=51%  Similarity=0.837  Sum_probs=62.2

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (599)
                      .+|||+||||+++||..+||+|||+||++||||+|  +      ..++|+.|++||+|||||.+|++||.+|...+
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~--~------~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~   94 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG--G------DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGL   94 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--c------hHHHHHHHHHHHHHhccHHHHHHHhhhcchhc
Confidence            47999999999999999999999999999999998  2      14799999999999999999999999986543

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=1.3e-16  Score=172.02  Aligned_cols=72  Identities=44%  Similarity=0.705  Sum_probs=65.2

Q ss_pred             cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (599)
Q Consensus         6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (599)
                      .|||+||||+++||.++||+|||+||++||||+|  ++  ...|.++|+.|++||+||+||.+|+.||.++...+.
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~   72 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKN--PG--DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPF   72 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--chHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccc
Confidence            4899999999999999999999999999999999  32  346899999999999999999999999999876543

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=6.8e-17  Score=173.49  Aligned_cols=71  Identities=41%  Similarity=0.641  Sum_probs=65.3

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (599)
                      .+|||+||||+++||..+||+|||+||++||||+|  ++   +.|.++|+.|++||+|||||.+|++||.+|...+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~   74 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS--EE---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM   74 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC---ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence            68999999999999999999999999999999998  22   4689999999999999999999999999986543

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=1.4e-16  Score=172.11  Aligned_cols=72  Identities=46%  Similarity=0.707  Sum_probs=65.3

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (599)
                      ..|||+||||+++|+..+||+|||+||++||||++  ++  ...|.++|+.|++||+||+||.+|+.||.++...+
T Consensus         2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~   73 (397)
T PRK14281          2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKN--PD--NKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV   73 (397)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence            47999999999999999999999999999999999  32  24688999999999999999999999999987544

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=8.3e-17  Score=172.24  Aligned_cols=76  Identities=42%  Similarity=0.613  Sum_probs=70.6

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (599)
                      ..+||.+|+|+++||.++|++|||++++.|||||+..| +..+.|++.|+.|+.||+|||||++|+.||.+|.++|.
T Consensus         8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dp-d~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDP-DQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCCh-hHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            45899999999999999999999999999999999543 46778999999999999999999999999999999887

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.65  E-value=2.3e-16  Score=167.77  Aligned_cols=69  Identities=45%  Similarity=0.739  Sum_probs=63.2

Q ss_pred             CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551            7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (599)
Q Consensus         7 d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (599)
                      |||+||||+++||.++||+|||+||++||||++.     ...|.++|+.|++||+||+||.+|+.||.++...+
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~   69 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-----DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF   69 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence            7999999999999999999999999999999993     23578999999999999999999999999986543

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.64  E-value=1e-16  Score=183.74  Aligned_cols=73  Identities=27%  Similarity=0.450  Sum_probs=66.0

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (599)
                      +.++||+||||+++||..+||+|||+||++||||++  ++ .  .|..+|+.|++||+|||||.+|++||.+|..++.
T Consensus       571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN--~~-~--~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~  643 (1136)
T PTZ00341        571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKR--SG-N--EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK  643 (1136)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CC-c--hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence            468999999999999999999999999999999999  43 2  4788999999999999999999999999876543

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=5.1e-16  Score=166.48  Aligned_cols=70  Identities=36%  Similarity=0.614  Sum_probs=63.8

Q ss_pred             cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (599)
Q Consensus         6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (599)
                      +|||+||||+++||.++||+|||+||++||||++.  .   ..|+++|+.|++||+||+||.+|+.||.+|...+
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~--~---~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~   72 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD--A---KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF   72 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---cCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence            79999999999999999999999999999999983  2   2478899999999999999999999999986543

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=3.1e-16  Score=155.82  Aligned_cols=73  Identities=51%  Similarity=0.752  Sum_probs=67.0

Q ss_pred             CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (599)
Q Consensus         3 ~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (599)
                      ..++|+|+||||.++||..+|++||++|||+||||++  +.....+|+..|+.|+.||.||||.++|+.||..|.
T Consensus        11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~--~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~   83 (264)
T KOG0719|consen   11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKN--HEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS   83 (264)
T ss_pred             ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcc--hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence            3567999999999999999999999999999999999  344667899999999999999999999999999764

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.61  E-value=5.2e-16  Score=125.43  Aligned_cols=64  Identities=45%  Similarity=0.779  Sum_probs=59.2

Q ss_pred             CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhh
Q 007551            7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYD   73 (599)
Q Consensus         7 d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YD   73 (599)
                      |||+||||+++++..+|+++|++|++.+|||++..   ....+...|..|+.||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~---~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSG---DEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTS---THHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchh---hhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            58999999999999999999999999999999832   22578999999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.60  E-value=1.1e-15  Score=159.77  Aligned_cols=68  Identities=35%  Similarity=0.582  Sum_probs=62.5

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (599)
                      ..|||+||||+++||.++||+|||+||++||||++.  .   ..|.++|+.|++||+||+||.+|+.||.++.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~--~---~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK--E---PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            369999999999999999999999999999999983  1   3589999999999999999999999999764

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=8.7e-16  Score=164.28  Aligned_cols=70  Identities=39%  Similarity=0.743  Sum_probs=64.5

Q ss_pred             cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (599)
Q Consensus         6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (599)
                      .|||+||||+++||..+||+|||+||++||||++  +. ..+.|.++|+.|++||+||+||.+|+.||.+|..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~--~~-~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~   72 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLH--PG-NKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV   72 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC-chhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence            7999999999999999999999999999999998  32 3346899999999999999999999999998764

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=7.5e-16  Score=159.94  Aligned_cols=70  Identities=49%  Similarity=0.733  Sum_probs=64.9

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (599)
                      ..|||.||||..+||..+|++|||++||+||||||  |+++  .|.+.|+.|.+||+||+||..|+.||..|..
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKN--p~dP--~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~   73 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKN--PGDP--QAAEKFQELSEAYEVLSDEESRAAYDKLRKS   73 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCC--CCCh--HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence            68999999999999999999999999999999999  6533  3999999999999999999999999998753

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=1.6e-15  Score=163.25  Aligned_cols=71  Identities=51%  Similarity=0.775  Sum_probs=65.0

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (599)
                      .+|||+||||+++||.++|++|||+||++||||++  ++  .++|.++|+.|++||+||+||.+|+.||.++...
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~--~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~   74 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKN--PG--DKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG   74 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence            58999999999999999999999999999999999  32  2468999999999999999999999999987643

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1e-15  Score=155.19  Aligned_cols=71  Identities=51%  Similarity=0.727  Sum_probs=64.5

Q ss_pred             cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (599)
Q Consensus         6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (599)
                      .++|+||||+++||.++||||||+|+++||||++.  . + ++++.+|+.|+.||.|||||.+|..||.+|.-.+
T Consensus        31 ~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~g--d-~-P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l  101 (279)
T KOG0716|consen   31 LDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNG--D-N-PEATDKFKEINTAYAILSDPTKRNVYDEYGELGL  101 (279)
T ss_pred             hHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCC--C-C-chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence            46999999999999999999999999999999992  2 2 6799999999999999999999999999976544

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=3.4e-15  Score=159.93  Aligned_cols=68  Identities=43%  Similarity=0.715  Sum_probs=63.1

Q ss_pred             cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (599)
Q Consensus         6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (599)
                      .|||+||||+++||.++||+|||+||++||||++.     ...|.++|+.|++||+||+||.+|+.||.+|..
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-----~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~   69 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-----EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA   69 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence            58999999999999999999999999999999992     246889999999999999999999999998764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.56  E-value=5.2e-15  Score=154.46  Aligned_cols=72  Identities=38%  Similarity=0.648  Sum_probs=64.9

Q ss_pred             CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (599)
Q Consensus         3 ~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (599)
                      +.++|||.||||.++|+..+|.+|||+||++||||-.+. ......|.++|.-|..|-+|||||.+|+.||..
T Consensus       391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqd-EeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG  462 (504)
T KOG0624|consen  391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQD-EEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG  462 (504)
T ss_pred             hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccC-HHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence            468999999999999999999999999999999999842 223456999999999999999999999999984

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=3.8e-15  Score=159.85  Aligned_cols=69  Identities=41%  Similarity=0.691  Sum_probs=63.3

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (599)
                      ..|||+||||+++||..+||+|||+||++||||++.  .   ..|.++|+.|++||+||+||.+|+.||.++..
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~--~---~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~   70 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNK--E---PGAEDRFKEINRAYEVLSDPETRARYDQFGEA   70 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCC--C---cCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence            379999999999999999999999999999999983  1   34789999999999999999999999998764

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=5.8e-15  Score=153.44  Aligned_cols=69  Identities=42%  Similarity=0.639  Sum_probs=63.8

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (599)
                      .+.|||+||||+++||..|||+||++||++||||.|..     ..|.++|+.|.+||+||+|+.+|..||..+.
T Consensus        41 ~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-----~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~  109 (288)
T KOG0715|consen   41 SKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-----KEASKKFKEISEAYEILSDEEKRQEYDVYGL  109 (288)
T ss_pred             CCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-----cchhhHHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence            44599999999999999999999999999999999932     2799999999999999999999999999865

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.50  E-value=3.8e-14  Score=112.72  Aligned_cols=59  Identities=51%  Similarity=0.837  Sum_probs=53.8

Q ss_pred             cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChh
Q 007551            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK   67 (599)
Q Consensus         6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~   67 (599)
                      ++||+||||+++++..+|+++|++|++.||||++.  +. ...+...|..|+.||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~--~~-~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNP--GD-KEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--Cc-hHHHHHHHHHHHHHHHHHcCCC
Confidence            48999999999999999999999999999999993  21 5678999999999999999985

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=3.6e-14  Score=135.89  Aligned_cols=73  Identities=44%  Similarity=0.695  Sum_probs=65.4

Q ss_pred             CCCCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhcc
Q 007551            1 MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (599)
Q Consensus         1 m~~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (599)
                      |+....+||+||||+++|+..+|++|||+||++||||++.  +... .|.+.|+.|++||.||+||..|+.||..+
T Consensus         1 ~~~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~--~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           1 MMSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNP--GDPK-VAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             CchhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC--Cchh-HHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            4567789999999999999999999999999999999993  2222 58999999999999999999999999864

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.46  E-value=1.1e-13  Score=108.11  Aligned_cols=55  Identities=47%  Similarity=0.770  Sum_probs=50.8

Q ss_pred             CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007551            7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD   65 (599)
Q Consensus         7 d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsD   65 (599)
                      |||+||||++++|.++|+++||+|++.||||++.  +.  ..+...|+.|+.||+||+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~--~~--~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNP--DD--PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--Cc--HHHHHHHHHHHHHHHHhcC
Confidence            6999999999999999999999999999999993  21  6789999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.41  E-value=2.3e-13  Score=153.83  Aligned_cols=70  Identities=41%  Similarity=0.653  Sum_probs=63.8

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (599)
                      ++|||+||||+++|+..+||+|||+|+++||||++.  +   ..+..+|+.|++||+||+||.+|+.||.++...
T Consensus         1 k~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~--~---~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG   70 (871)
T TIGR03835         1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNK--A---PDAASIFAEINEANDVLSNPKKRANYDKYGHDG   70 (871)
T ss_pred             CCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence            369999999999999999999999999999999983  2   467889999999999999999999999987643

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=3.4e-13  Score=133.23  Aligned_cols=70  Identities=31%  Similarity=0.557  Sum_probs=63.3

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (599)
                      ..-|+|+||||+++||..+||+|||+|+++|||||++.+    ....+.|..|.+||+.|+|+..|..|..+|.
T Consensus        97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~----~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~  166 (230)
T KOG0721|consen   97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE----EGDEEFFEAIAKAYQALTDKKSRENWEKYGN  166 (230)
T ss_pred             hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc----chhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence            356899999999999999999999999999999999322    4568899999999999999999999999865

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=3.4e-13  Score=143.63  Aligned_cols=70  Identities=49%  Similarity=0.825  Sum_probs=65.1

Q ss_pred             CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (599)
Q Consensus         3 ~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (599)
                      +...|||.||||.++|+..+||+|||++||.||||++  .+ +..+++.+|+.|-+||.||+||.+|..||+.
T Consensus       370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~--ag-sq~eaE~kFkevgeAy~il~d~~kr~r~dsg  439 (486)
T KOG0550|consen  370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKN--AG-SQKEAEAKFKEVGEAYTILSDPMKRVRFDSG  439 (486)
T ss_pred             hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcC--cc-hhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence            4568999999999999999999999999999999999  34 4678999999999999999999999999985

>PHA03102 Small T antigen; Reviewed

Probab=99.35  E-value=6e-13  Score=126.57  Aligned_cols=66  Identities=23%  Similarity=0.345  Sum_probs=59.7

Q ss_pred             ccCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551            5 KRCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (599)
Q Consensus         5 ~~d~YeVLGV~~~A--s~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (599)
                      ...+|+||||+++|  |..+||+|||++|+++|||++  +      ..++|+.|+.||+||+|+..|..||.++..
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg--g------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~   71 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG--G------DEEKMKELNTLYKKFRESVKSLRDLDGEED   71 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC--c------hhHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence            35689999999999  999999999999999999997  2      246999999999999999999999998753

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=9.6e-13  Score=132.28  Aligned_cols=74  Identities=42%  Similarity=0.698  Sum_probs=65.4

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (599)
                      +.|||.||||.+.|+..+|++|||+||++||||++  ++. ...|..+|++|.+||+||+||.+|..||.++...+.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~--~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~   75 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKN--PSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLK   75 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCC--CCc-hhhHHHHHhhhhccccccCCHHHhhhccccCccccc
Confidence            57999999999999999999999999999999998  443 445666999999999999999999999999874443

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.33  E-value=1.4e-12  Score=125.79  Aligned_cols=71  Identities=25%  Similarity=0.324  Sum_probs=59.8

Q ss_pred             ccCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhcc
Q 007551            5 KRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (599)
Q Consensus         5 ~~d~YeVLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (599)
                      +.|||+||||++.  ++..+|+++||+|+++||||++.. ......+...|..|++||.||+||.+|+.|+-..
T Consensus         1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~-~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l   73 (166)
T PRK01356          1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT-LQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL   73 (166)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            3689999999996  789999999999999999999832 1122345667999999999999999999998753

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.31  E-value=2.7e-12  Score=124.34  Aligned_cols=70  Identities=29%  Similarity=0.382  Sum_probs=59.5

Q ss_pred             cCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551            6 RCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (599)
Q Consensus         6 ~d~YeVLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~-~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (599)
                      .|||+||||++.  ++..+|+++||+|+++||||+....+. ....|...|..|++||+||+||.+|+.|+-.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~   73 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS   73 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence            489999999995  778999999999999999999843221 1224788999999999999999999999964

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.27  E-value=6.5e-12  Score=122.23  Aligned_cols=75  Identities=29%  Similarity=0.429  Sum_probs=61.7

Q ss_pred             CCCCccCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551            1 MASEKRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (599)
Q Consensus         1 m~~~~~d~YeVLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~-~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (599)
                      |-+...|||+||||++.  ++..+|+++||+|+++||||++...+. ....+...+..|+.||.||+||.+|+.|+-.
T Consensus         1 ~~~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~   78 (176)
T PRK03578          1 MVSLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH   78 (176)
T ss_pred             CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence            34567899999999995  688999999999999999999842211 1123567789999999999999999999974

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.23  E-value=1.8e-11  Score=118.79  Aligned_cols=72  Identities=26%  Similarity=0.450  Sum_probs=61.3

Q ss_pred             CccCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551            4 EKRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (599)
Q Consensus         4 ~~~d~YeVLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~-~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (599)
                      ...+||++|||++.  .+..+|+++||+|+++||||++...+. ....+...|..|+.||.||+||.+|+.|+-.
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~   76 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA   76 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            46789999999996  678999999999999999999843211 1234788999999999999999999999975

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.7e-11  Score=131.97  Aligned_cols=66  Identities=33%  Similarity=0.577  Sum_probs=62.3

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (599)
                      .+|+|.||||+.++++++||+.||++|...|||||.     .+.|.+.|+.|+.||+||+|+.+|..||.-
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-----~~~A~Eafk~Lq~Afevig~~~kR~eYd~e  299 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-----IPRAEEAFKKLQVAFEVIGDSVKRKEYDLE  299 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-----ChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence            579999999999999999999999999999999993     457999999999999999999999999975

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.07  E-value=1.3e-10  Score=119.95  Aligned_cols=60  Identities=40%  Similarity=0.632  Sum_probs=52.9

Q ss_pred             cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCC---HHHHHHHHHHHHHHHHhcCC
Q 007551            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLS---QAEATAQFQELVHAYEVLSD   65 (599)
Q Consensus         6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~---~~ea~~~F~~I~~AYeVLsD   65 (599)
                      .++|+||||+++||.++||+|||+|+++||||++...+.+   .+.|+++|+.|+.||++|+.
T Consensus       200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999998543322   35689999999999999974

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=5.8e-11  Score=119.79  Aligned_cols=67  Identities=36%  Similarity=0.622  Sum_probs=61.1

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (599)
                      ...|-|+||||.+.|+..+|.+|||+||++||||++.+     +++.+.|..|..||++|.|...|..||-.
T Consensus        31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-----~e~k~~F~~iAtayeilkd~e~rt~ydya   97 (329)
T KOG0722|consen   31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-----PESKKLFVKIATAYEILKDNETRTQYDYA   97 (329)
T ss_pred             cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-----chhhhhhhhhhcccccccchhhHHhHHHH
Confidence            45789999999999999999999999999999999932     34569999999999999999999999975

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=98.99  E-value=3e-10  Score=103.54  Aligned_cols=52  Identities=31%  Similarity=0.462  Sum_probs=46.7

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcC
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS   64 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLs   64 (599)
                      ..++|+||||+++||.++|+++||+|++++|||+.   |     ....|+.|++||+||.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---G-----s~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---G-----STYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-----CHHHHHHHHHHHHHHh
Confidence            35799999999999999999999999999999985   2     2468899999999995

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.93  E-value=1.3e-09  Score=117.28  Aligned_cols=74  Identities=26%  Similarity=0.468  Sum_probs=64.9

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCC-CCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQ-SGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~-~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (599)
                      ..=|+|+||||..+++..+||++||+|+.+|||||..+ -+....+-++.+..|++||..|+|...|..|-.+|.
T Consensus        96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt  170 (610)
T COG5407          96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT  170 (610)
T ss_pred             cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence            34589999999999999999999999999999999832 023456789999999999999999999999998864

>PHA02624 large T antigen; Provisional

Probab=98.91  E-value=7.8e-10  Score=124.27  Aligned_cols=61  Identities=28%  Similarity=0.407  Sum_probs=56.1

Q ss_pred             CccCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhh
Q 007551            4 EKRCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWY   72 (599)
Q Consensus         4 ~~~d~YeVLGV~~~A--s~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~Y   72 (599)
                      ..+++|+||||+++|  +..+||+|||+||++||||++   |     +.++|+.|+.||++|+|+.+|..|
T Consensus         9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---G-----deekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624          9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---G-----DEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---C-----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence            346799999999999  999999999999999999997   1     257999999999999999999999

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.81  E-value=6.7e-09  Score=101.01  Aligned_cols=71  Identities=23%  Similarity=0.238  Sum_probs=60.0

Q ss_pred             ccCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551            5 KRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (599)
Q Consensus         5 ~~d~YeVLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~-~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (599)
                      ..|||++|||++.  .+...|+++|+.|...+|||+....+. ....|......|++||.+|.||-+|+.|=-.
T Consensus         1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~   74 (173)
T PRK01773          1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIA   74 (173)
T ss_pred             CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHH
Confidence            3699999999995  899999999999999999999843321 1234677899999999999999999999764

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.67  E-value=3.8e-08  Score=94.33  Aligned_cols=59  Identities=34%  Similarity=0.405  Sum_probs=49.4

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCChhhhhhhhhcc
Q 007551           18 CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (599)
Q Consensus        18 As~~eIKkAYRkLalk~HPDKn~~~~~-~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (599)
                      .+..+|+++||+|+++||||+....+. ....+...|..|++||.||+||.+|+.|+-..
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l   62 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL   62 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence            477899999999999999999743221 22347889999999999999999999999864

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=9.6e-08  Score=101.07  Aligned_cols=180  Identities=22%  Similarity=0.284  Sum_probs=134.0

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhccCCCCCCCCCCCCCcc
Q 007551           18 CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLY   97 (599)
Q Consensus        18 As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~~~~~~~~~~~~~dl~   97 (599)
                      ++...|..+|+..++.+||++...-....-.....|++|.+||.||++...|..+|.+.. +..          .++   
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~-~~~----------~l~---   69 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDK-FAE----------ALP---   69 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhH-HHh----------cCc---
Confidence            577889999999999999999721000111356789999999999999777778888741 110          011   


Q ss_pred             ccCCCCCCCCCCCCCCCccchhhhHHHHhhhhhHHHHHhhcCCCcccccCccCCCCCCCccchhhhhhhhhcceeeeccc
Q 007551           98 SYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFC  177 (599)
Q Consensus        98 ~~Fs~s~f~gf~d~~~gFy~vy~~vF~~i~~eE~~f~~~~g~~~s~~~~~P~fGd~~s~~e~V~~FY~~W~~F~T~RsFs  177 (599)
                               ++......|+..++..|....            .+.....+|.++..+++...|..||.+|..|..|+.|.
T Consensus        70 ---------~~~~~~~~~~~~~~~~~~v~~------------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y~  128 (335)
T KOG0724|consen   70 ---------LEKRLEDKIEEYIGLVFDVNI------------RESGQKPFPKYGKSDTSLAEVEEFYNFWPKFKSWRQYP  128 (335)
T ss_pred             ---------cccccchhHHhhhhhHHHHhh------------hhccCCCccccCccccccccccccCCccccccccccCC
Confidence                     111122334444445444322            13345678999988877788899999999999999999


Q ss_pred             ccccccccCCCChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhH
Q 007551          178 WVDEYDVMAGPNRKSRRVM-----EEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDM  232 (599)
Q Consensus       178 w~Deyd~~~a~nR~~RR~m-----EKENkK~R~k~kKE~n~~VR~LV~~vkkRDpRv~~~  232 (599)
                      ..++.+.....+|...|++     .+.|...+.+.+......++.||..+...++++.-.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (335)
T KOG0724|consen  129 QKDEPDEEDSENRSQSRYSGGTQRGKSNAEELRRKGTPVTERERKLVLLALKKDGKIDWR  188 (335)
T ss_pred             CCCCcccccccchhhhhhcccccccccchhhhhhccchhHHHHHHHHHhhhcccccccce
Confidence            9887766666889999999     488999999999999999999999999999999753

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=6.5e-08  Score=95.11  Aligned_cols=67  Identities=30%  Similarity=0.462  Sum_probs=59.8

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS   74 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs   74 (599)
                      .-++|+||.|.+..+.++||+.||+|++..|||||  +. +.+.|...|--|.+||.+|-|+..|..-+.
T Consensus        52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN--~D-d~~rAqkAFdivkKA~k~l~n~~~rkr~~~  118 (250)
T KOG1150|consen   52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKN--PD-DAERAQKAFDIVKKAYKLLENDKIRKRCLD  118 (250)
T ss_pred             ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCC--cc-cHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            35799999999999999999999999999999999  33 567899999999999999999997765554

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.46  E-value=6.8e-08  Score=66.06  Aligned_cols=26  Identities=58%  Similarity=0.957  Sum_probs=25.4

Q ss_pred             cccccccccccChHHHHHhHhhHHHH
Q 007551          299 FYCVLCGKKFKSEKQWTNHEQSKKHK  324 (599)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~SKKHk  324 (599)
                      |||++|+|.|.++.+|.+|++||+|+
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCCC
Confidence            79999999999999999999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.08  E-value=2.1e-06  Score=61.46  Aligned_cols=33  Identities=39%  Similarity=0.717  Sum_probs=30.6

Q ss_pred             CccccccccccccChHHHHHhHhhHHHHHHHHH
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVAD  329 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~  329 (599)
                      ..|+|.+|++.|.+..+|.+|.+|++|+++|++
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            358999999999999999999999999999875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.96  E-value=4.5e-06  Score=55.62  Aligned_cols=25  Identities=52%  Similarity=0.991  Sum_probs=24.4

Q ss_pred             cccccccccccChHHHHHhHhhHHH
Q 007551          299 FYCVLCGKKFKSEKQWTNHEQSKKH  323 (599)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~SKKH  323 (599)
                      |+|.+|++.|.+..+|..|++|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            7899999999999999999999998

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=3.6e-05  Score=89.95  Aligned_cols=53  Identities=36%  Similarity=0.484  Sum_probs=45.4

Q ss_pred             ccCcccccCcCCC----CCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcC
Q 007551            5 KRCLYEVLGLRKE----CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS   64 (599)
Q Consensus         5 ~~d~YeVLGV~~~----As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLs   64 (599)
                      -.+.|+||.|+-+    ...+.||++|+|||.+||||||  |     +..++|..+++||+.|+
T Consensus      1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--P-----EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--P-----EGREMFERVNKAYELLS 1336 (2235)
T ss_pred             hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--c-----hHHHHHHHHHHHHHHHH
Confidence            3468999999863    3447899999999999999999  2     46889999999999998

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=97.61  E-value=2.5e-05  Score=71.41  Aligned_cols=36  Identities=36%  Similarity=0.758  Sum_probs=34.2

Q ss_pred             cCccccccccccccChHHHHHhHhhHHHHHHHHHHH
Q 007551          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR  331 (599)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~  331 (599)
                      ...|||..|.+.|.+.++|+.|.++|.||+.|+.|+
T Consensus        55 ~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~   90 (129)
T KOG3408|consen   55 GGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELR   90 (129)
T ss_pred             CceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcc
Confidence            467999999999999999999999999999999987

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=7.1e-05  Score=75.47  Aligned_cols=55  Identities=33%  Similarity=0.570  Sum_probs=48.5

Q ss_pred             cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHH-hcCC
Q 007551            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE-VLSD   65 (599)
Q Consensus         6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYe-VLsD   65 (599)
                      +.+|.||||...|+.++++.||..|++.+|||..     +.+...+.|++|.+||. ||+.
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsg-----s~~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSG-----SEEADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCC-----CccccHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999999999999998     23446789999999999 8873

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=97.00  E-value=0.00063  Score=73.00  Aligned_cols=39  Identities=38%  Similarity=0.635  Sum_probs=35.2

Q ss_pred             hccCccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 007551          294 KKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE  332 (599)
Q Consensus       294 ~~~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~  332 (599)
                      +....+||.+|+|.|.|.+++.+|++||+|+.++..+.+
T Consensus        64 ~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r  102 (390)
T KOG2785|consen   64 EAESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR  102 (390)
T ss_pred             hcccceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence            345678999999999999999999999999999998766

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.0017  Score=58.65  Aligned_cols=50  Identities=22%  Similarity=0.351  Sum_probs=42.2

Q ss_pred             ccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCh
Q 007551            9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDP   66 (599)
Q Consensus         9 YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp   66 (599)
                      -.||||.++++.+.||.|+||+-+..|||+...|        -.-..|++|+++|...
T Consensus        59 ~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP--------YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   59 ALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP--------YLASKINEAKDLLEGT  108 (112)
T ss_pred             HHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH--------HHHHHHHHHHHHHhcc
Confidence            3599999999999999999999999999998432        2345699999999743

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=96.54  E-value=0.001  Score=59.90  Aligned_cols=37  Identities=35%  Similarity=0.741  Sum_probs=34.8

Q ss_pred             cCccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 007551          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE  332 (599)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~  332 (599)
                      ...+||..|.+.|.++.+|..|.++|=|++.++.|+.
T Consensus        53 lGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRe   89 (126)
T COG5112          53 LGQHYCIECARYFITEKALMEHKKGKVHKRRAKELRE   89 (126)
T ss_pred             CceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhc
Confidence            4568999999999999999999999999999999985

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.20  E-value=0.0037  Score=46.60  Aligned_cols=32  Identities=38%  Similarity=0.647  Sum_probs=20.5

Q ss_pred             cccccccccccc--ChHHHHHhHhhHHHHHHHHH
Q 007551          298 EFYCVLCGKKFK--SEKQWTNHEQSKKHKEKVAD  329 (599)
Q Consensus       298 ~~~C~~C~K~F~--s~~~~~nH~~SKKHk~~~~~  329 (599)
                      -+||..|++.|.  +....++|+.+.+|+.+|++
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            379999999994  34566999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.0092  Score=57.35  Aligned_cols=72  Identities=26%  Similarity=0.449  Sum_probs=56.5

Q ss_pred             CccCcccccCcCC--CCCHHHHHHHHHHHHHHhCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551            4 EKRCLYEVLGLRK--ECTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (599)
Q Consensus         4 ~~~d~YeVLGV~~--~As~~eIKkAYRkLalk~HPDKn~~~~~-~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (599)
                      ...+||.++|...  ...+.-+.--|.-...++|||+...+.. ....|.+....|++||.+|.||-.|+.|=.-
T Consensus         6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk   80 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLK   80 (168)
T ss_pred             hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3567999998765  4566666668999999999999643311 2236888999999999999999999999764

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.33  E-value=0.013  Score=57.10  Aligned_cols=58  Identities=34%  Similarity=0.571  Sum_probs=49.4

Q ss_pred             cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCH---HHHHHHHHHHHHHHHhc
Q 007551            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQ---AEATAQFQELVHAYEVL   63 (599)
Q Consensus         6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~---~ea~~~F~~I~~AYeVL   63 (599)
                      .+.|.+||+...+...+|+++|+++...+|||+-..-+...   ..+.+.++.|+.||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999975444333   35889999999999753

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.10  E-value=0.015  Score=37.77  Aligned_cols=22  Identities=32%  Similarity=0.806  Sum_probs=20.5

Q ss_pred             cccccccccccChHHHHHhHhh
Q 007551          299 FYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      |.|..|++.|.+...|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5799999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.95  E-value=0.08  Score=58.59  Aligned_cols=71  Identities=7%  Similarity=-0.027  Sum_probs=66.2

Q ss_pred             hhhhhhhhhcceeeecccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Q 007551          160 VTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMD  231 (599)
Q Consensus       160 V~~FY~~W~~F~T~RsFsw~Deyd~~~a~nR~~RR~mEKENkK~R~k~kKE~n~~VR~LV~~vkkRDpRv~~  231 (599)
                      +..||..|.+|+|.--|.|. .|...-...+..++.|.+.+..++....+.-+..|++++.++++++.|+..
T Consensus       133 d~~~~ap~fg~~~t~ye~~~-~fY~~W~afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak~eyN  203 (508)
T KOG0717|consen  133 DSKLLYPLFGYSTTDYEQVV-PFYQFWLAFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQYARQEYN  203 (508)
T ss_pred             CCccccccccCCCCcHHHHH-HHHHHHHhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999999 888888899999999999999999999999999999999999999999865

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=94.93  E-value=0.032  Score=62.26  Aligned_cols=49  Identities=37%  Similarity=0.501  Sum_probs=36.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHH---HHHHHHHHHHHHHHh
Q 007551           14 LRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQA---EATAQFQELVHAYEV   62 (599)
Q Consensus        14 V~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~---ea~~~F~~I~~AYeV   62 (599)
                      |..-.+..+||++|||.+|..||||.+..|....   .|.+.|-.+++|+..
T Consensus       396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~  447 (453)
T KOG0431|consen  396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK  447 (453)
T ss_pred             hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence            4445789999999999999999999976554332   366666666666653

>PLN02748 tRNA dimethylallyltransferase

Probab=94.92  E-value=0.019  Score=64.18  Aligned_cols=37  Identities=24%  Similarity=0.804  Sum_probs=33.4

Q ss_pred             cCccccccccc-cccChHHHHHhHhhHHHHHHHHHHHH
Q 007551          296 RSEFYCVLCGK-KFKSEKQWTNHEQSKKHKEKVADLRE  332 (599)
Q Consensus       296 ~~~~~C~~C~K-~F~s~~~~~nH~~SKKHk~~~~~l~~  332 (599)
                      ...|+|.+|++ +|..+.+|..|++|++|+++++.+++
T Consensus       416 ~~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k  453 (468)
T PLN02748        416 WTQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQ  453 (468)
T ss_pred             cccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHh
Confidence            35568999997 89999999999999999999998864

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=93.57  E-value=0.04  Score=58.91  Aligned_cols=65  Identities=22%  Similarity=0.327  Sum_probs=46.8

Q ss_pred             cCccccccccccccChHHHHHhHhhHHHHHHHHHHHHH------------hhhhhhHhhhccCCchhhhhhhhhhhc
Q 007551          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRES------------FVDEDEVMADFGELDGEVEELGERFKD  360 (599)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~~------------~~~e~~~~~~~~~~~~~~~~~~e~~~e  360 (599)
                      ...+||+.|.+-|+..+.|..|+.+|-|.++++..+.-            ++.+.-.-+...+.+.-+.+..|++.+
T Consensus       236 ~~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~~v~~Ey~l~r~~kyl~d~~s~trs~V~r~la~ta~ER~ae  312 (470)
T COG5188         236 FPKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEEFVYSEYVLHRYLKYLGDPVSETRSLVLRSLAITAKERKAE  312 (470)
T ss_pred             ccceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            46689999999999999999999999999999876651            112222223344555566666677654

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=93.39  E-value=0.052  Score=34.66  Aligned_cols=22  Identities=36%  Similarity=0.922  Sum_probs=18.3

Q ss_pred             cccccccccccChHHHHHhHhh
Q 007551          299 FYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      |.|..|++.|.+..+|..|+.+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            5799999999999999999875

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=93.23  E-value=0.05  Score=36.63  Aligned_cols=23  Identities=39%  Similarity=0.700  Sum_probs=20.8

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|++.|.+..+|..|.++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCCccCCccCChhHHHHHhHH
Confidence            37899999999999999999864

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=93.18  E-value=0.061  Score=52.46  Aligned_cols=69  Identities=29%  Similarity=0.402  Sum_probs=54.2

Q ss_pred             CcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCC-HHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551            7 CLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLS-QAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (599)
Q Consensus         7 d~YeVLGV~~~A--s~~eIKkAYRkLalk~HPDKn~~~~~~-~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (599)
                      +|+.++|+.+.+  ..+.++..|+.+.+.+|||+....+.. ...+...+..++.||.+|-||-.|+.|=..
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la   73 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA   73 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            466667777654  445689999999999999998644321 223678999999999999999999999764

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=93.01  E-value=0.058  Score=52.59  Aligned_cols=35  Identities=23%  Similarity=0.539  Sum_probs=31.6

Q ss_pred             cCccccccccccccChHHHHHhHhhHHHHHHHHHH
Q 007551          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL  330 (599)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l  330 (599)
                      ..-|||.+|+=+|+---+|.-|++-|+|..++--+
T Consensus        73 ~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms  107 (193)
T KOG4727|consen   73 KGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS  107 (193)
T ss_pred             cCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence            45689999999999999999999999999987654

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=91.38  E-value=0.069  Score=45.61  Aligned_cols=31  Identities=35%  Similarity=0.724  Sum_probs=26.4

Q ss_pred             ccccccccccccChHHHHHhHhhHHHHHHHH
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVA  328 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~  328 (599)
                      .+.|..|++.|.+..+|..|++++.|.....
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            5899999999999999999999999987654

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.30  E-value=0.17  Score=51.48  Aligned_cols=36  Identities=31%  Similarity=0.680  Sum_probs=33.5

Q ss_pred             cCccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 007551          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE  332 (599)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~  332 (599)
                      ...+.|.+|+--.+ .+-|..|.+||||+.+|..|+.
T Consensus        33 sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs   68 (264)
T KOG3032|consen   33 SGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKS   68 (264)
T ss_pred             CCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHh
Confidence            46689999999999 9999999999999999999993

>smart00355 ZnF_C2H2 zinc finger

Probab=90.06  E-value=0.24  Score=31.75  Aligned_cols=21  Identities=38%  Similarity=0.779  Sum_probs=19.6

Q ss_pred             cccccccccccChHHHHHhHh
Q 007551          299 FYCVLCGKKFKSEKQWTNHEQ  319 (599)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~  319 (599)
                      +.|..|++.|.+...|..|++
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            469999999999999999987

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=87.29  E-value=0.19  Score=42.81  Aligned_cols=30  Identities=27%  Similarity=0.568  Sum_probs=26.3

Q ss_pred             CchhhhhcccchhhhhhhhhhcCCCCcccc
Q 007551          568 SNVCEKCGQEFETRNKLHKHLGDTGHASLK  597 (599)
Q Consensus       568 ~~~c~~c~~~f~sr~kl~~hl~~~gh~~~k  597 (599)
                      .+.|..|+..|.|+..|..||...||..+.
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~   79 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRN   79 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCcc
Confidence            689999999999999999999999998763

>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]

Probab=87.18  E-value=0.17  Score=52.72  Aligned_cols=35  Identities=23%  Similarity=0.577  Sum_probs=32.5

Q ss_pred             ccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE  332 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~  332 (599)
                      -|||..|.|.|..+|.|+-|..|-.|.+.+.++..
T Consensus        25 RwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~~   59 (309)
T KOG2837|consen   25 RWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFAL   59 (309)
T ss_pred             HHHHHHHHHHhccccccccccCCHHHHHHHHHHHh
Confidence            38999999999999999999999999999988763

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.47  E-value=0.58  Score=36.96  Aligned_cols=28  Identities=32%  Similarity=0.552  Sum_probs=24.1

Q ss_pred             CccccccccccccChHHHHHhHhhHHHHHHH
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKV  327 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~  327 (599)
                      ..-||..|...|.+   |..|..|.+|+.-+
T Consensus         4 k~GYCE~C~~ky~~---l~~Hi~s~~Hr~FA   31 (49)
T PF07535_consen    4 KPGYCENCRVKYDD---LEEHIQSEKHRKFA   31 (49)
T ss_pred             CCccCccccchhhh---HHHHhCCHHHHHHH
Confidence            34599999999985   89999999999755

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>PHA02768 hypothetical protein; Provisional

Probab=84.44  E-value=0.59  Score=37.80  Aligned_cols=24  Identities=25%  Similarity=0.688  Sum_probs=22.4

Q ss_pred             cccccccccccChHHHHHhHhhHHHH
Q 007551          299 FYCVLCGKKFKSEKQWTNHEQSKKHK  324 (599)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~SKKHk  324 (599)
                      |.|..|+|.|....+|..|+++  |.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~--H~   29 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRK--HN   29 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHh--cC
Confidence            6899999999999999999987  66

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=84.09  E-value=0.61  Score=36.88  Aligned_cols=30  Identities=27%  Similarity=0.520  Sum_probs=24.9

Q ss_pred             cCccccccccccccChHHHHHhHhhHHHHHHHH
Q 007551          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVA  328 (599)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~  328 (599)
                      ...-||..|...|.   .|..|..|++|+.=..
T Consensus         3 ~k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~   32 (49)
T smart00586        3 KKPGYCENCREKYD---DLETHLLSEKHRRFAE   32 (49)
T ss_pred             CCCcccccHhHHHh---hHHHHhccHHHHHHHc
Confidence            34579999999997   5888999999997544

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.88  E-value=0.46  Score=30.60  Aligned_cols=20  Identities=30%  Similarity=0.919  Sum_probs=18.5

Q ss_pred             hhhhhcccchhhhhhhhhhc
Q 007551          570 VCEKCGQEFETRNKLHKHLG  589 (599)
Q Consensus       570 ~c~~c~~~f~sr~kl~~hl~  589 (599)
                      .|+.||..|.++..|-.|+.
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    2 KCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCccCCHHHHHHHHh
Confidence            59999999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=81.40  E-value=0.66  Score=29.41  Aligned_cols=20  Identities=30%  Similarity=0.913  Sum_probs=16.5

Q ss_pred             hhhhhcccchhhhhhhhhhc
Q 007551          570 VCEKCGQEFETRNKLHKHLG  589 (599)
Q Consensus       570 ~c~~c~~~f~sr~kl~~hl~  589 (599)
                      .|+-||..|.++..|-.|+.
T Consensus         2 ~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    2 QCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             E-SSTS-EESSHHHHHHHHH
T ss_pred             CCcCCCCcCCcHHHHHHHHH
Confidence            59999999999999999985

...

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=80.78  E-value=2.3  Score=39.97  Aligned_cols=49  Identities=24%  Similarity=0.304  Sum_probs=35.1

Q ss_pred             cccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcC
Q 007551            8 LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS   64 (599)
Q Consensus         8 ~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLs   64 (599)
                      -..||||++.++.++|.+.|.+|-...+|++..        ..-.=..|..|.+.|.
T Consensus        60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGG--------SfYLQSKV~rAKErl~  108 (127)
T PF03656_consen   60 ARQILNVKEELSREEIQKRYKHLFKANDPSKGG--------SFYLQSKVFRAKERLE  108 (127)
T ss_dssp             HHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS---------HHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHhccCCCcCC--------CHHHHHHHHHHHHHHH
Confidence            357999999999999999999999999999872        2344456777888775

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=80.35  E-value=1.7  Score=44.25  Aligned_cols=37  Identities=35%  Similarity=0.650  Sum_probs=29.7

Q ss_pred             CccccccccccccChHHHHHhHhhHHHHHHHHHHHHHh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF  334 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~~~  334 (599)
                      .-|-|..|.|.|+-..=+..|+. +||-+.|..+++++
T Consensus        76 ~K~~C~lc~KlFkg~eFV~KHI~-nKH~e~ve~~~~ev  112 (214)
T PF04959_consen   76 DKWRCPLCGKLFKGPEFVRKHIF-NKHPEKVEEVKKEV  112 (214)
T ss_dssp             EEEEE-SSS-EESSHHHHHHHHH-HH-HHHHHHHHHHH
T ss_pred             CEECCCCCCcccCChHHHHHHHh-hcCHHHHHHHHHHH
Confidence            45899999999999999999987 67999999887655

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=80.08  E-value=0.77  Score=30.76  Aligned_cols=20  Identities=30%  Similarity=0.811  Sum_probs=18.7

Q ss_pred             hhhhhcccchhhhhhhhhhc
Q 007551          570 VCEKCGQEFETRNKLHKHLG  589 (599)
Q Consensus       570 ~c~~c~~~f~sr~kl~~hl~  589 (599)
                      .|..|+..|.+...|..|+.
T Consensus         3 ~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    3 ECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             EETTTTEEESSHHHHHHHHC
T ss_pred             CCCccCCccCChhHHHHHhH
Confidence            59999999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	599
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		6e-10
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		7e-10
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		7e-10
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		9e-10
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		1e-08
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		1e-08
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		2e-08
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		2e-08
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		4e-08
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		3e-07
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		5e-07
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		6e-07
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		7e-07
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		1e-06
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		1e-06
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		5e-06
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		5e-06
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		1e-05
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		2e-05
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		4e-05
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		1e-04

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          K+  YE+LG+ K     EIR AYK+LA++ HPD+         EA A+F+E+  AYEVL+
Sbjct: 2  KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR----NQGDKEAEAKFKEIKEAYEVLT 57
Query: 65 DPKERAWYDSH 75
          D ++RA YD +
Sbjct: 58 DSQKRAAYDQY 68

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          K+  YE+LG+ K     EIR AYK+LA++ HPD+         EA A+F+E+  AYEVL+
Sbjct: 2  KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR----NQGDKEAEAKFKEIKEAYEVLT 57
Query: 65 DPKERAWYDSH 75
          D ++RA YD +
Sbjct: 58 DSQKRAAYDQY 68

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 1  MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
          +++    LY VLGL K  T+D+I+ +Y+KLAL+ HPDK         EA  +F+E+ +A+
Sbjct: 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDK----NPDNPEAADKFKEINNAH 67
Query: 61 EVLSDPKERAWYDSHRSQILF 81
           +L+D  +R  YD + S  L+
Sbjct: 68 AILTDATKRNIYDKYGSLGLY 88

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          K+  YE+LG+ K     EIR AYK+LA++ HPD+         EA A+F+E+  AYEVL+
Sbjct: 2  KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR----NQGDKEAEAKFKEIKEAYEVLT 57
Query: 65 DPKERAWYDSH 75
          D ++RA YD +
Sbjct: 58 DSQKRAAYDQY 68

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 7/65 (10%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y+VLG++   T +E++ AY+KLAL+ HPDK    G        +F+++  AYEVLSD K+
Sbjct: 9  YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG-------EKFKQISQAYEVLSDAKK 61
Query: 69 RAWYD 73
          R  YD
Sbjct: 62 RELYD 66

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 7/65 (10%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y+VLG++ + + +E++ AY+K+AL+ HPDK         +   QF+++  AYEVLSD K+
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDK-------NPDGAEQFKQISQAYEVLSDEKK 63
Query: 69 RAWYD 73
          R  YD
Sbjct: 64 RQIYD 68

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YEVL + ++ +++ I+ AY+KLAL+ HPDK  +   ++ EA  +F+++  AYEVLSD K+
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE---NKEEAERRFKQVAEAYEVLSDAKK 68
Query: 69 RAWYDSHRS 77
          R  YD + S
Sbjct: 69 RDIYDRYGS 77

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YEVLG++   + ++I+ AY+KLAL+ HPDK   +  ++ EA  +F+ +  AYEVLSD K+
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDK---NPDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 69 RAWYD 73
          R+ YD
Sbjct: 69 RSLYD 73

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y+ LGL +  + +EI+ AY++ AL+ HPDK  + G     A  +F+E+  AY+VLSDP++
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-----AEEKFKEIAEAYDVLSDPRK 60
Query: 69 RAWYDSH 75
          R  +D +
Sbjct: 61 REIFDRY 67

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YE+LG+ +  + ++++ AY++LAL+ HPDK    G     AT  F+ +  AY VLS+P++
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPG-----ATEAFKAIGTAYAVLSNPEK 64
Query: 69 RAWYD 73
          R  YD
Sbjct: 65 RKQYD 69

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 3   SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
           S+KR  Y++LG+++     EI  AY+KLALQ HPD   Q+   + +A  +F ++  A EV
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF-QNEEEKKKAEKKFIDIAAAKEV 437
Query: 63  LSDPKERAWYD 73
           LSDP+ R  +D
Sbjct: 438 LSDPEXRKKFD 448

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 3   SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
           S+KR  Y++LG+++     EI  AY+KLALQ HPD   Q+   + +A  +F ++  A EV
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF-QNEEEKKKAEKKFIDIAAAKEV 437
Query: 63  LSDPKERAWYD 73
           LSDP+ R  +D
Sbjct: 438 LSDPEMRKKFD 448

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y++LG+ K  +  +I+ A+ KLA++ HPDK         +A A+F+E+  AYE LSD   
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDK-----NKSPDAEAKFREIAEAYETLSDANR 64
Query: 69 RAWYDS 74
          R  YD+
Sbjct: 65 RKEYDT 70

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 7  CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDP 66
            YE+L + +  + D+I+ AY++ ALQ HPDK      ++  A  +F+E+  AYEVLSD 
Sbjct: 3  SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPD---NKEFAEKKFKEVAEAYEVLSDK 59
Query: 67 KERAWYDSHRSQILFSDLNSASNCGP 92
           +R  YD +  + L     + +  GP
Sbjct: 60 HKREIYDRYGREGL-----TGTGTGP 80

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 8  LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67
          LY++LG+       E++  Y+K AL+ HPDK           T +F+E+  A+E+L+DP+
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-------TEKFKEISEAFEILNDPQ 62
Query: 68 ERAWYDSH 75
          +R  YD +
Sbjct: 63 KREIYDQY 70

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 8  LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67
           Y +LG+ K  ++ EIR A+KKLAL+ HPDK      +   A   F ++  AYEVL D  
Sbjct: 4  FYSLLGVSKTASSREIRQAFKKLALKLHPDK----NPNNPNAHGDFLKINRAYEVLKDED 59
Query: 68 ERAWYDSH 75
           R  YD +
Sbjct: 60 LRKKYDKY 67

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y++LG+ +  +  EI+ AY +LA + HPD    +     +A  +F +L  AYEVLSD  +
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPD----TNKDDPKAKEKFSQLAEAYEVLSDEVK 65
Query: 69 RAWYDSHRS 77
          R  YD++ S
Sbjct: 66 RKQYDAYGS 74

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 8  LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67
           Y +LG+ K  ++ EIR A+KKLAL+ HPDK      +   A   F ++  AYEVL D  
Sbjct: 23 FYSLLGVSKTASSREIRQAFKKLALKLHPDK----NPNNPNAHGDFLKINRAYEVLKDED 78
Query: 68 ERAWYDSH 75
           R  YD +
Sbjct: 79 LRKKYDKY 86

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y VLG+ +  +  +I+ AYKKLA + HPDK    G     A  +F ++  AYE+LS+ ++
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG-----AEDRFIQISKAYEILSNEEK 74
Query: 69 RAWYDSHRS 77
          R  YD + S
Sbjct: 75 RTNYDHYGS 83

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 3  SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
          SE +  Y ++G++       I++AY++LA + HPD        + +A A+F+E+  A+EV
Sbjct: 2  SELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPD-----VSKEPDAEARFKEVAEAWEV 56
Query: 63 LSDPKERAWYD 73
          LSD + RA YD
Sbjct: 57 LSDEQRRAEYD 67

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
          A E +  Y +LG++       I++AY++LA + HPD   ++     +A A+F++L  A+E
Sbjct: 24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-----DAEAKFKDLAEAWE 78
Query: 62 VLSDPKERAWYD 73
          VL D + RA YD
Sbjct: 79 VLKDEQRRAEYD 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	599
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-19
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	2e-18
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	5e-17
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	5e-17
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	9e-17
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	1e-16
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	2e-16
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-16
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	2e-16
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	2e-16
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	3e-16
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	5e-16
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	5e-16
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	6e-16
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	7e-16
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	9e-16
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	1e-15
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-15
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	3e-15
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	3e-15
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	1e-14
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	4e-14
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	5e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-14
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	8e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	1e-09
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	2e-09
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	4e-09
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-08
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	1e-07
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	1e-07
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	3e-06
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	3e-06
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	6e-06
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	9e-06
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	1e-05
3iyl_X	1214	VP3; non-enveloped virus, membrane penetration pro	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-05
2guz_A	71	Mitochondrial import inner membrane translocase su	1e-04

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 85.3 bits (211), Expect = 1e-19
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 7/132 (5%)

Query: 3   SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKL--VQSGLSQAEATAQFQELVHAY 60
             K+  Y +LG        +++  Y+KL L  HPDK        +  E   +F E+  A+
Sbjct: 7   MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAW 66

Query: 61  EVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGK--GFYKV 118
           ++L + + +  YD  R +    DL +         L     N     +  S +  G Y V
Sbjct: 67  KILGNEETKREYDLQRCE---DDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSV 123

Query: 119 YSDLFNKIYSVE 130
             D   ++  + 
Sbjct: 124 SKDEAEEVSLIS 135

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 9/107 (8%)

Query: 1   MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
           +++    LY VLGL K  T+D+I+ +Y+KLAL+ HPDK         EA  +F+E+ +A+
Sbjct: 12  LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDK----NPDNPEAADKFKEINNAH 67

Query: 61  EVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSG 107
            +L+D  +R  YD + S      L  A   G   N+ +YF +   SG
Sbjct: 68  AILTDATKRNIYDKYGSL----GLYVAEQFGE-ENVNTYFVSGPSSG 109

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 74.6 bits (184), Expect = 5e-17
 Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 7/70 (10%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
          ++   Y+VLG++ + + +E++ AY+K+AL+ HPDK         +   QF+++  AYEVL
Sbjct: 6  KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDK-------NPDGAEQFKQISQAYEVL 58

Query: 64 SDPKERAWYD 73
          SD K+R  YD
Sbjct: 59 SDEKKRQIYD 68

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 75.4 bits (186), Expect = 5e-17
 Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
          +S     YEVLG++   + ++I+ AY+KLAL+ HPDK   +  ++ EA  +F+ +  AYE
Sbjct: 5  SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDK---NPDNKEEAEKKFKLVSEAYE 61

Query: 62 VLSDPKERAWYD 73
          VLSD K+R+ YD
Sbjct: 62 VLSDSKKRSLYD 73

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 74.2 bits (183), Expect = 9e-17
 Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
          +S     YEVL + ++ +++ I+ AY+KLAL+ HPDK   +  ++ EA  +F+++  AYE
Sbjct: 5  SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDK---NPENKEEAERRFKQVAEAYE 61

Query: 62 VLSDPKERAWYD 73
          VLSD K+R  YD
Sbjct: 62 VLSDAKKRDIYD 73

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 74.4 bits (183), Expect = 1e-16
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          +  LY++LG+    T  +I++AY +     HPD+   SG ++A    +F  +  AY VL 
Sbjct: 16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDR--NSGSAEAA--ERFTRISQAYVVLG 71

Query: 65 DPKERAWYD 73
              R  YD
Sbjct: 72 SATLRRKYD 80

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 74.2 bits (183), Expect = 2e-16
 Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          K+  YE+LG+ K     EIR AYK+LA++ HPD+    G  +AE  A+F+E+  AYEVL+
Sbjct: 2  KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR--NQGDKEAE--AKFKEIKEAYEVLT 57

Query: 65 DPKERAWYD 73
          D ++RA YD
Sbjct: 58 DSQKRAAYD 66

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 73.4 bits (181), Expect = 2e-16
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 5/65 (7%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y+ LGL +  + +EI+ AY++ AL+ HPDK       +  A  +F+E+  AY+VLSDP++
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDK-----NKEPGAEEKFKEIAEAYDVLSDPRK 60

Query: 69 RAWYD 73
          R  +D
Sbjct: 61 REIFD 65

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 74.4 bits (183), Expect = 2e-16
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
          + +    Y +LG  +  + ++I + +K  AL+ HPDK       +A     FQ+L  A E
Sbjct: 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDK--HPENPKAV--ETFQKLQKAKE 71

Query: 62 VLSDPKERAWYD 73
          +L++ + RA YD
Sbjct: 72 ILTNEESRARYD 83

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 73.6 bits (181), Expect = 2e-16
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 1  MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
          +++     Y VLG+ +  +  +I+ AYKKLA + HPDK          A  +F ++  AY
Sbjct: 12 LSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDK-----NKDPGAEDRFIQISKAY 66

Query: 61 EVLSDPKERAWYD 73
          E+LS+ ++R  YD
Sbjct: 67 EILSNEEKRTNYD 79

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 3/68 (4%)

Query: 6  RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
             YE+L + +  + D+I+ AY++ ALQ HPDK   +  ++  A  +F+E+  AYEVLSD
Sbjct: 2  ASYYEILDVPRSASADDIKKAYRRKALQWHPDK---NPDNKEFAEKKFKEVAEAYEVLSD 58

Query: 66 PKERAWYD 73
            +R  YD
Sbjct: 59 KHKREIYD 66

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 76.1 bits (187), Expect = 5e-16
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y +LG+ K  ++ EIR A+KKLAL+ HPDK        A     F ++  AYEVL D   
Sbjct: 5  YSLLGVSKTASSREIRQAFKKLALKLHPDK--NPNNPNAH--GDFLKINRAYEVLKDEDL 60

Query: 69 RAWYDSH 75
          R  YD +
Sbjct: 61 RKKYDKY 67

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 72.7 bits (179), Expect = 5e-16
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
          ++  LY++LG+       E++  Y+K AL+ HPDK           T +F+E+  A+E+L
Sbjct: 6  KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDK-------PTGDTEKFKEISEAFEIL 58

Query: 64 SDPKERAWYD 73
          +DP++R  YD
Sbjct: 59 NDPQKREIYD 68

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 72.3 bits (178), Expect = 6e-16
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
               Y++LG+ K  +  +I+ A+ KLA++ HPDK         +A A+F+E+  AYE L
Sbjct: 5  SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDK-----NKSPDAEAKFREIAEAYETL 59

Query: 64 SDPKERAWYD 73
          SD   R  YD
Sbjct: 60 SDANRRKEYD 69

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 71.5 bits (176), Expect = 7e-16
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
          +      Y++LG+ +  +  EI+ AY +LA + HPD          +A  +F +L  AYE
Sbjct: 3  SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDT----NKDDPKAKEKFSQLAEAYE 58

Query: 62 VLSDPKERAWYD 73
          VLSD  +R  YD
Sbjct: 59 VLSDEVKRKQYD 70

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 71.5 bits (176), Expect = 9e-16
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
               YE+LG+ +  + ++++ AY++LAL+ HPDK          AT  F+ +  AY VL
Sbjct: 5  SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDK-----NHAPGATEAFKAIGTAYAVL 59

Query: 64 SDPKERAWYD 73
          S+P++R  YD
Sbjct: 60 SNPEKRKQYD 69

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 71.7 bits (176), Expect = 1e-15
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 3  SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDK--LVQSGLSQAEATAQFQELVHAY 60
          + K+  Y +LG        +++  Y+KL L  HPDK        +  E   +F E+  A+
Sbjct: 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72

Query: 61 EVLSDPKERAWYDSHRS 77
          ++L + + +  YD  RS
Sbjct: 73 KILGNEETKKKYDLQRS 89

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 73.4 bits (180), Expect = 2e-15
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 3  SEKRCLYEVLGLRKECTTD--EIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
           E   L ++LGL +    +   +R AY K   + HPDK             + +++   Y
Sbjct: 8  EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDK--------GGDEEKMKKMNTLY 59

Query: 61 EVLSDPKERAWYD 73
          + + D  + A   
Sbjct: 60 KKMEDGVKYAHQP 72

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 76.5 bits (189), Expect = 3e-15
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 26/124 (20%)

Query: 4   EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQ-AEATAQFQELVHAYEV 62
           E +  Y +LG++       I++AY++LA + HPD      +S+  +A A+F++L  A+EV
Sbjct: 26  ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPD------VSKENDAEAKFKDLAEAWEV 79

Query: 63  LSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDL 122
           L D + RA YD                       +           +       + + D+
Sbjct: 80  LKDEQRRAEYDQLWQ-------------------HRNDPGFGRQRQTHEQSYSQQDFDDI 120

Query: 123 FNKI 126
           F+ +
Sbjct: 121 FSSM 124

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 5  KRCLYEVLGLRKECTT-DEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
              Y+VL + +E     ++  AY+ LA + HPD+ V++   +  A  +F+ +  AYE L
Sbjct: 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDR-VKNKEEKLLAEERFRVIATAYETL 72

Query: 64 SDPKERAWYD 73
           D + +  YD
Sbjct: 73 KDDEAKTNYD 82

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 69.5 bits (170), Expect = 1e-14
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 1  MASEKRCLYEVLGLRKECTTD--EIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVH 58
          M  E   L ++LGL +    +   +R AY K   + HPDK             + +++  
Sbjct: 3  MREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDK--------GGDEEKMKKMNT 54

Query: 59 AYEVLSDPKERAWYD 73
           Y+ + D  + A   
Sbjct: 55 LYKKMEDGVKYAHQP 69

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 67.0 bits (164), Expect = 4e-14
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 1  MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
            S  + +  V+    +    E +   ++L L+ HPDK   +  +   A   F+ L +  
Sbjct: 11 RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDK---NPENHDIANEVFKHLQNEI 67

Query: 61 EVLSDPKERAWYDSHRSQIL 80
            L    ++A+ D +  +  
Sbjct: 68 NRLE---KQAFLDQNADRAS 84

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 66.7 bits (163), Expect = 5e-14
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
           +  +++LG++   + DE+  AY+KLA+  HPDK V  G     +   F+ +V+A   L 
Sbjct: 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG-----SEDAFKAVVNARTALL 80

Query: 65 DPKERAWYD 73
             +     
Sbjct: 81 KNIKSGPSS 89

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 73.2 bits (180), Expect = 7e-14
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 3   SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
           S+KR  Y++LG+++     EI  AY+KLALQ HPD   Q+   + +A  +F ++  A EV
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF-QNEEEKKKAEKKFIDIAAAKEV 437

Query: 63  LSDPKERAWYDS 74
           LSDP+ R  +D 
Sbjct: 438 LSDPEMRKKFDD 449

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 67.5 bits (164), Expect = 8e-12
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
              +  Y +LG+ K  ++ EIR A+KKLAL+ HPDK   +      A   F ++  AYE
Sbjct: 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN----PNAHGDFLKINRAYE 72

Query: 62 VLSDPKERAWYDSH 75
          VL D   R  YD +
Sbjct: 73 VLKDEDLRKKYDKY 86

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.4 bits (161), Expect = 2e-11
 Identities = 62/513 (12%), Positives = 124/513 (24%), Gaps = 162/513 (31%)

Query: 20  TDEIRSAYKKLALQRHPD-------KLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWY 72
           T E +  YK +              K VQ       +  +   ++ +     D       
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS----KDAVSGTLR 66

Query: 73  DSHRSQILFSDLNSASNCGPVPNLYSYFSN-----------TAFSGYSDSGKGFYKVYSD 121
                  LF  L S         +   F             +             ++Y +
Sbjct: 67  -------LFWTLLSKQE-----EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 122 LFNKIYSVEVSYVK----------KLGLGLDVLREAPI-----MG---------NLESPY 157
             +++Y+    + K          KL   L  LR A       +          ++   Y
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 158 GQVTAFYN--YWLGFS------TVM----DFCWVDEYDVMAGPNRKSR---RVMEEENKK 202
                     +WL         TV+       +  + +  +  +  S    R+   + + 
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 203 LRKKAKREYNE---------TVRELAAF-------VKKRDKRVMDMMVKKNEEIERKREE 246
            R    + Y             +   AF       +  R K+V D +             
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS----AATTTHIS 290

Query: 247 EKERKKRLEKERMER--AKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYCVLC 304
                  L  + ++    K      +              + L  E      +     + 
Sbjct: 291 LDHHSMTLTPDEVKSLLLK------YLDCR---------PQDLPREV--LTTNPRRLSII 333

Query: 305 GKKFKSEK-QWTNHEQSKKHKEKVADLRESFV---DEDEVMADFGELDGEVEELGERFKD 360
            +  +     W N +      +K+  + ES +   +  E    F  L   V      F  
Sbjct: 334 AESIRDGLATWDNWKHVNC--DKLTTIIESSLNVLEPAEYRKMFDRL--SV------FPP 383

Query: 361 NVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDEDEDEDADDEVNML 420
           +  +                 + S  +                   +    D    VN L
Sbjct: 384 SAHIPT--------------ILLSLIWF------------------DVIKSDVMVVVNKL 411

Query: 421 --KAMLSGHKNRKRVAVRKEDEVLKTEAHVENE 451
              +++   K  K   +      L+ +  +ENE
Sbjct: 412 HKYSLVE--KQPKESTISIPSIYLELKVKLENE 442

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 9  YEVLGLRKECTTD--EIRSAYKKLALQRHPDKLV-QSGLSQAEATAQFQELVHAYEVLSD 65
          + + GL      D   +   ++ L  Q HPDK    S   Q  A  Q   +  A++ L  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 66 PKERAWYDSHRSQI 79
          P  RA Y       
Sbjct: 64 PLMRAEYLLSLHGF 77

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 52.6 bits (126), Expect = 4e-09
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 10/73 (13%)

Query: 3  SEKRCLYEVLGLRKECTTD--EIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
          ++K  L E+L L ++   D   ++ AYK+ +L  HPDK          + A  QEL   +
Sbjct: 8  ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDK--------GGSHALMQELNSLW 59

Query: 61 EVLSDPKERAWYD 73
                      +
Sbjct: 60 GTFKTEVYNLRMN 72

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 53.3 bits (127), Expect = 2e-08
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 4   EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
                ++ +G+    T ++++  Y+K  L  HPDK       +  A   F EL  A+   
Sbjct: 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP-YEQYAKMIFMELNDAWSEF 173

Query: 64  SDPKERAWY 72
            +  ++  Y
Sbjct: 174 ENQGQKPLY 182

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 51.7 bits (123), Expect = 1e-07
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 9   YEVLGLRKECTTD--EIRSAYKKLALQRHPDKLV-QSGLSQAEATAQFQELVHAYEVLSD 65
           + ++   +    D  +++  Y++L    HPD    +S   +  +      +  AY+ L  
Sbjct: 46  FSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA 105

Query: 66  PKERAWYD 73
           P  R  Y 
Sbjct: 106 PLSRGLYL 113

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 14/77 (18%)

Query: 9  YEVLGLRKECT-------TDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
          YE+                  +R  Y++L  Q HPD          + + Q   L  AY 
Sbjct: 14 YELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDM-------AQQGSEQSSTLNQAYH 66

Query: 62 VLSDPKERAWYDSHRSQ 78
           L DP  R+ Y     +
Sbjct: 67 TLKDPLRRSQYMLKLLR 83

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 9   YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAE---ATAQFQELVHAYEVLS 64
           ++ + L      + +R +Y++  L  HPDKL Q G S  +   A   F+ L  A++  +
Sbjct: 43  WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFN 101

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 402

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 10/133 (7%)

Query: 284 EEGLEEEEIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMAD 343
           E       +  +    YC  C + FK+   + +H   K HK+  +  R     E ++   
Sbjct: 278 EHSYCRGSLRSEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRNFVYSEYKLHRY 337

Query: 344 FGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFG 403
              L+ E        +  +     E  + +  L+   +  +           +  +    
Sbjct: 338 LKYLNDEFSRTRSFVERKLAFTANERMAEMDILTQKYEAPAY----------DSTEKEGA 387

Query: 404 KEDEDEDEDADDE 416
           ++ + E  D   +
Sbjct: 388 EQVDGEQRDGQLQ 400

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4 Length = 124

 Score = 44.7 bits (105), Expect = 6e-06
 Identities = 12/70 (17%), Positives = 24/70 (34%)

Query: 273 IDDEGDNEVGNEEGLEEEEIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332
           +  +G      +   E +          C+ C + F        H +SK HK+++  L  
Sbjct: 25  LRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV 84

Query: 333 SFVDEDEVMA 342
               ++E   
Sbjct: 85  EPYSQEEAER 94

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 47.9 bits (113), Expect = 9e-06
 Identities = 27/202 (13%), Positives = 61/202 (30%), Gaps = 12/202 (5%)

Query: 403 GKEDEDEDEDADDEVNMLKAMLSGHKNRKRVAV-----RKEDEVLKTEAHVENEIGESEF 457
           GK ++  +   D    +       +K            R++       A V+     +E 
Sbjct: 14  GKGNDSTERSDDGSSQLRDK--QNNKAGPATTEPGTSNREQYRARPGIASVQRATESAEL 71

Query: 458 MEYDNCKSTRRKNKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGN 517
              +N       +KK   +          +D      ++     +    + + S + + N
Sbjct: 72  PMKNN--DEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINN 129

Query: 518 KNNGISDNHSEKDPKIPDQPVDGKGTKKDRKAKLKNSSKGNKTKTASKNSSNVCEKCGQE 577
            N      + + +     +P+  +  +       K+ ++     TAS      C  C   
Sbjct: 130 ANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAV 189

Query: 578 FETRNKLHKHL---GDTGHASL 596
             +   L  H+   G  G+ +L
Sbjct: 190 LFSPLDLDAHVASHGLHGNMTL 211

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
               ++ +G+    T ++++  Y+K  L  HP K       +  A   F EL  A+   
Sbjct: 31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQP-YEQYAKMIFMELNDAWSEF 89

Query: 64 SD 65
           +
Sbjct: 90 EN 91

>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_C 3k1q_B Length = 1214

 Score = 47.1 bits (111), Expect = 2e-05
 Identities = 21/132 (15%), Positives = 36/132 (27%), Gaps = 8/132 (6%)

Query: 462 NCKSTRRKNKKDRGKKSGGEAAKGDRDGFKSTNEEAN--GHHNSGVIEESSSHSCVGNKN 519
             +S            +             S N+ A       +G++   S         
Sbjct: 8   KAQSAIASPADTNVVPAKDAPTTNSPPSTTSPNQAAADANQQQAGIVSSQSGP---NAVG 64

Query: 520 NGISDNHSEKDPKIPDQPV---DGKGTKKDRKAKLKNSSKGNKTKTASKNSSNVCEKCGQ 576
           +    +    D  I  +P            + A + +  +  K       SS VC  C  
Sbjct: 65  DSAPSSSVNNDGDIITRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNA 124

Query: 577 EFETRNKLHKHL 588
            F T + L +HL
Sbjct: 125 RFSTMSALSEHL 136

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 46/273 (16%), Positives = 110/273 (40%), Gaps = 50/273 (18%)

Query: 190  RKSRRVMEEENKKLRKKAKREY------NETVRELAAFVKKRDKRVMDMMVKKNEEIERK 243
             +    + EE   L++K + E        E    LAA  ++ ++ + +M   + EE E +
Sbjct: 884  EQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEME-ARIEEEEER 942

Query: 244  REEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYCVL 303
             ++ +  KK+++++ ++  ++ EE   AR   + +    + +  + E+      +     
Sbjct: 943  SQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN--- 999

Query: 304  CGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVG 363
               K   E+        K  +E+V+DL  +  +E+E   +  +L  + E +    +  + 
Sbjct: 1000 --NKLTKER--------KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK 1049

Query: 364  VEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDEDEDEDADDEVNMLKAM 423
             EE+            +++E                    ++ E E  D  +++  L+A 
Sbjct: 1050 KEEKSR----------QELEKIK-----------------RKLEGESSDLHEQIAELQAQ 1082

Query: 424  LSGHKNRKRVAVRKEDEVLKTEAHVENEIGESE 456
            ++  K +     +KE+E+    A +E+E  +  
Sbjct: 1083 IAELKAQLA---KKEEELQAALARLEDETSQKN 1112

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 31/236 (13%), Positives = 82/236 (34%), Gaps = 23/236 (9%)

Query: 190  RKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEKE 249
             +  + +  +       A+  Y+ T++ +        + +    +KK +   R  E  K+
Sbjct: 862  LREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKK 921

Query: 250  RKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYCVLCGKKFK 309
                LE + M+  ++ +E                 +  +    +    E       +K +
Sbjct: 922  LHIGLENKIMQLQRKIDE---------------QNKEYKSLLEKMNNLEITYSTETEKLR 966

Query: 310  SEKQW--TNHEQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGVEER 367
            S+ +    + E++K    +V  L+E      + +         +EE  +++K        
Sbjct: 967  SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026

Query: 368  EIGSGVGGLSGD-EDVESEFFDVADGVEVNEVDDRFGKEDEDEDEDADDEVNMLKA 422
            E+      L  + E++     D     +  E+ +   K+  +E +  + ++N  + 
Sbjct: 1027 ELKEQNTLLKTEKEELNRRIHD-----QAKEITETMEKKLVEETKQLELDLNDERL 1077

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 9  YEVLGLRKECTT-DEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67
           ++L L +   T  +++  ++K+ L  HPDK    G S   A     ++  A + L    
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDK----GGSPFLA----TKINEAKDFLEKRG 68

Query: 68 ER 69
            
Sbjct: 69 IS 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	599
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.76
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.76
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.76
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.76
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.75
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.74
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.74
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.74
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.73
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.73
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.72
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.71
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.71
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.7
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.7
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.66
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.64
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.64
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.61
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.6
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.6
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.56
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.55
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.54
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.54
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.53
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.52
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.52
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.5
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.5
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.48
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.45
2guz_A	71	Mitochondrial import inner membrane translocase su	99.42
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.81
2guz_B	65	Mitochondrial import inner membrane translocase su	98.3
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	98.02
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.35
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	97.29
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.49
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	96.32
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.74
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	92.72
1ard_A	29	Yeast transcription factor ADR1; transcription reg	92.11
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	92.07
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	92.0
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	91.26
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	90.95
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	90.79
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	90.73
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	90.63
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	89.99
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	90.54
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.51
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.5
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.49
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	90.27
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.21
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	90.11
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.08
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	89.75
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.6
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.4
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	88.48
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	88.34
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	88.56
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.48
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	88.22
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	88.19
1paa_A	30	Yeast transcription factor ADR1; transcription reg	88.13
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.1
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	87.88
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	87.71
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.58
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.54
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.47
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	87.43
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.38
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	87.34
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	87.28
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.28
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.27
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	87.26
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.25
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.21
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	87.17
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.04
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	87.04
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.92
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	86.9
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.85
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.83
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.81
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.81
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	86.8
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.77
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.73
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	86.69
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	86.66
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.65
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	86.6
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	86.57
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	86.55
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.48
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	86.47
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	86.47
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	86.42
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	86.42
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.38
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	86.35
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	86.32
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.32
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.3
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.26
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.25
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.19
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	86.15
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	86.09
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.06
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	86.05
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	86.02
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.01
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	85.97
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	85.91
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	85.88
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.88
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	85.88
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	85.88
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	85.87
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.85
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.85
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.83
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	85.81
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	85.79
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	85.79
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	85.76
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.65
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	85.61
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.58
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.57
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.49
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.44
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.43
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	85.38
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	85.36
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.25
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	85.24
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.19
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.19
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.19
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.17
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	85.14
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	85.11
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	85.09
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	85.01
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.96
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	84.91
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	84.9
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	84.79
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.63
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.62
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.58
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.57
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	84.54
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	84.44
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.19
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	84.19
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.1
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	84.01
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	83.97
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	83.92
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.86
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	83.67
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	83.64
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	83.53
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	83.47
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	83.04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	83.01
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	82.93
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	82.9
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	82.18
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	82.05
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.01
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	81.97
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	81.64
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	81.32
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	80.64
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	80.13

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=5.4e-19  Score=148.85  Aligned_cols=73  Identities=42%  Similarity=0.657  Sum_probs=66.2

Q ss_pred             CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (599)
Q Consensus         3 ~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (599)
                      +...+||+||||+++|+..+||+|||+|+++||||++  ++ ..+.+.+.|+.|++||+||+||.+|+.||.++..
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~--~~-~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   78 (82)
T 2ej7_A            6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKN--PE-NKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG   78 (82)
T ss_dssp             SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTC--ST-THHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC-cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            4568999999999999999999999999999999998  32 3567899999999999999999999999998753

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.76  E-value=1.8e-19  Score=158.54  Aligned_cols=73  Identities=45%  Similarity=0.713  Sum_probs=65.4

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (599)
                      ..+||+||||+++||..+||+|||+|+++||||++.  +  .+.+.+.|+.|++||+||+||.+|+.||.++...+.
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   74 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQ--G--DKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCT--T--TCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC--C--cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence            478999999999999999999999999999999993  2  135789999999999999999999999999875543

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.76  E-value=5.2e-19  Score=147.39  Aligned_cols=72  Identities=38%  Similarity=0.658  Sum_probs=65.2

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (599)
                      ..|||+||||+++||..+||+|||+|+++||||++..     +.+.+.|+.|++||+||+||.+|+.||.++..++.
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   73 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-----PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK   73 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-----TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence            4789999999999999999999999999999999932     24789999999999999999999999999876544

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=9.5e-19  Score=149.75  Aligned_cols=75  Identities=36%  Similarity=0.617  Sum_probs=68.1

Q ss_pred             CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhcc
Q 007551            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS   82 (599)
Q Consensus         3 ~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~   82 (599)
                      ....+||+||||+++|+..+||+|||+|+++||||++.     .+.+.+.|+.|++||+||+||.+|+.||..+...+.+
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   78 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-----SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS   78 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-----SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTC
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-----ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccc
Confidence            45679999999999999999999999999999999993     2568999999999999999999999999998766553

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=1.1e-18  Score=150.35  Aligned_cols=77  Identities=40%  Similarity=0.627  Sum_probs=68.1

Q ss_pred             CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhcc
Q 007551            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS   82 (599)
Q Consensus         3 ~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~   82 (599)
                      +...|||+||||+++|+..+||+|||+|+++||||++.  . ..+.+.+.|+.|++||+||+||.+|+.||..+...+.+
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~-~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   82 (92)
T 2dmx_A            6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNP--D-NKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA   82 (92)
T ss_dssp             CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCS--S-CSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC--c-cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            35679999999999999999999999999999999983  2 34678999999999999999999999999987655443

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=1.4e-18  Score=145.11  Aligned_cols=70  Identities=37%  Similarity=0.657  Sum_probs=64.2

Q ss_pred             CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (599)
Q Consensus         3 ~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (599)
                      ....|||+||||+++|+..+||+|||+|+++||||++.     .+.+.+.|+.|++||+||+||.+|+.||.++.
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-----~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   73 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-----APGATEAFKAIGTAYAVLSNPEKRKQYDQFGS   73 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCS-----SHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----CccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            34678999999999999999999999999999999993     24688999999999999999999999999865

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.74  E-value=7.7e-19  Score=156.28  Aligned_cols=75  Identities=41%  Similarity=0.651  Sum_probs=67.5

Q ss_pred             CCCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551            2 ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (599)
Q Consensus         2 ~~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (599)
                      +....+||+||||+++|+..+||+|||+|+++||||++.  +  .+.+.+.|+.|++||+||+||.+|+.||.++...+
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~--~--~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~   87 (109)
T 2ctw_A           13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNP--D--NPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL   87 (109)
T ss_dssp             TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTST--T--CHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC--C--cHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence            456789999999999999999999999999999999993  2  24689999999999999999999999999886544

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=1.5e-18  Score=145.15  Aligned_cols=71  Identities=37%  Similarity=0.590  Sum_probs=64.3

Q ss_pred             CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (599)
Q Consensus         3 ~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (599)
                      ....|||+||||+++|+..+||+|||+|+++||||++.  +  .+.+.+.|+.|++||+||+||.+|+.||.++.
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   74 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNK--D--DPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS   74 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCS--S--CTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C--CHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence            45679999999999999999999999999999999993  2  13588999999999999999999999999864

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.73  E-value=1.8e-18  Score=147.98  Aligned_cols=71  Identities=37%  Similarity=0.563  Sum_probs=64.6

Q ss_pred             CCCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551            2 ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (599)
Q Consensus         2 ~~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (599)
                      .....|||+||||+++|+..+||+|||+|+++||||++..     +.+.+.|+.|++||+||+||.+|+.||.++.
T Consensus        13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   83 (88)
T 2cug_A           13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-----PGAEDRFIQISKAYEILSNEEKRTNYDHYGS   83 (88)
T ss_dssp             CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-----TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-----hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence            3467899999999999999999999999999999999932     3478999999999999999999999999864

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.73  E-value=2e-18  Score=151.32  Aligned_cols=73  Identities=38%  Similarity=0.607  Sum_probs=64.6

Q ss_pred             cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (599)
Q Consensus         6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (599)
                      .|||+||||+++|+.++||+|||+|+++||||++.  + ..+.+.+.|+.|++||+||+||.+|+.||..+...+.
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~--~-~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~   74 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNP--D-NKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT   74 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCC--S-CCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--c-cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            68999999999999999999999999999999983  2 3457899999999999999999999999998765443

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.72  E-value=5.2e-18  Score=140.11  Aligned_cols=67  Identities=40%  Similarity=0.744  Sum_probs=60.8

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (599)
                      ...+||+||||+++|+..+|++|||+|+++||||++  ++     +.+.|+.|+.||+||+||.+|+.||.+|.
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~--~~-----~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKN--PD-----GAEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTC--TT-----CHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC--cC-----HHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            457999999999999999999999999999999998  32     25789999999999999999999999864

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.71  E-value=6.9e-18  Score=145.63  Aligned_cols=72  Identities=36%  Similarity=0.676  Sum_probs=65.0

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhcc
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS   82 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~   82 (599)
                      ...+||+||||+++|+..+||+|||+|+++||||++  ++     ..+.|+.|++||+||+||.+|+.||.++...+..
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~--~~-----~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   77 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKP--TG-----DTEKFKEISEAFEILNDPQKREIYDQYGLEAARS   77 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTST--TC-----CHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC-----hHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence            457899999999999999999999999999999998  33     2459999999999999999999999998877664

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.1e-17  Score=146.15  Aligned_cols=69  Identities=33%  Similarity=0.579  Sum_probs=62.7

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhcc
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (599)
                      ...+||+||||+++|+..+||+|||+|+++||||++.  +  .+.+.+.|+.|++||+||+||.+|+.||...
T Consensus        15 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l   83 (99)
T 2yua_A           15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNS--G--SAEAAERFTRISQAYVVLGSATLRRKYDRGL   83 (99)
T ss_dssp             CSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCS--S--CSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             CccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            4578999999999999999999999999999999993  2  2468899999999999999999999999853

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=5.4e-18  Score=151.41  Aligned_cols=72  Identities=32%  Similarity=0.505  Sum_probs=64.8

Q ss_pred             CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (599)
Q Consensus         3 ~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (599)
                      ....|||+||||+++|+..+||+|||+|+++||||++.  +  .+.+.+.|+.|++||+||+||.+|+.||.++..
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~--~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   88 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHP--E--NPKAVETFQKLQKAKEILTNEESRARYDHWRRS   88 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCT--T--CSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C--cHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence            34689999999999999999999999999999999993  2  135899999999999999999999999998753

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.70  E-value=6.9e-18  Score=145.41  Aligned_cols=74  Identities=28%  Similarity=0.479  Sum_probs=64.3

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCC--CCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSG--LSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~--~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (599)
                      ...|||+||||+++|+..+||+|||+|+++||||++....  .....+.+.|+.|++||+||+||.+|+.||..+.
T Consensus        14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            3579999999999999999999999999999999983111  1235789999999999999999999999999753

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.66  E-value=2.7e-17  Score=145.95  Aligned_cols=75  Identities=27%  Similarity=0.428  Sum_probs=65.9

Q ss_pred             CCCccCcccccCcCCCC-CHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551            2 ASEKRCLYEVLGLRKEC-TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (599)
Q Consensus         2 ~~~~~d~YeVLGV~~~A-s~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (599)
                      .....|||+||||+++| |..+||+|||+|+++||||++.. ....+.+.+.|+.|++||+||+||.+|+.||..+.
T Consensus        11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~-~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN-KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS-HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            34578999999999999 99999999999999999999832 12345789999999999999999999999999753

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.64  E-value=1.1e-16  Score=150.13  Aligned_cols=75  Identities=27%  Similarity=0.490  Sum_probs=65.2

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCC--CHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGL--SQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~--~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (599)
                      ...|||+||||+++|+..+||+|||+|+++||||++..++.  ..+.|.+.|+.|++||+||+||.+|+.||..+..
T Consensus         8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~   84 (155)
T 2l6l_A            8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCE   84 (155)
T ss_dssp             CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHH
T ss_pred             CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcch
Confidence            46799999999999999999999999999999999954321  2345789999999999999999999999986643

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.64  E-value=1.1e-16  Score=154.38  Aligned_cols=72  Identities=40%  Similarity=0.589  Sum_probs=65.0

Q ss_pred             cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (599)
Q Consensus         6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (599)
                      .|||+||||+++|+..+||+|||+|+++||||++.  +  .+.+.+.|+.|++||+||+||.+|+.||.+|...+.
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~--~--~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~   73 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNP--N--NPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE   73 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCT--T--CTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C--ChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence            68999999999999999999999999999999993  2  235889999999999999999999999999875543

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=2.3e-16  Score=135.74  Aligned_cols=62  Identities=29%  Similarity=0.476  Sum_probs=56.4

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAW   71 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~   71 (599)
                      ..|||+||||+++|+..+||+|||+|+++||||++..     +.+.+.|+.|++||+||+||.+|+.
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-----~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-----PGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-----TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-----ccHHHHHHHHHHHHHHHCCcccccC
Confidence            4789999999999999999999999999999999932     2478899999999999999998863

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.60  E-value=7.1e-17  Score=169.01  Aligned_cols=68  Identities=37%  Similarity=0.592  Sum_probs=0.0

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhcc
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (599)
                      ..+|||+||||+++||.++||+|||+||++||||++.  +   ..|.++|+.|++||+||+||.+|+.||.++
T Consensus        26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~--~---~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~   93 (329)
T 3lz8_A           26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSK--E---NDAEAKFKDLAEAWEVLKDEQRRAEYDQLW   93 (329)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCC--C---hHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence            3479999999999999999999999999999999993  2   368899999999999999999999999974

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.56  E-value=2.2e-15  Score=144.16  Aligned_cols=70  Identities=26%  Similarity=0.354  Sum_probs=61.2

Q ss_pred             CcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCChhhhhhhhhcc
Q 007551            7 CLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (599)
Q Consensus         7 d~YeVLGV~~~A--s~~eIKkAYRkLalk~HPDKn~~~~~-~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (599)
                      |||+||||++++  |..+||++||+|+++||||++...+. ....|...|+.|+.||+||+||.+|+.||...
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            799999999999  99999999999999999999943211 12247889999999999999999999999864

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.55  E-value=3.5e-16  Score=140.74  Aligned_cols=64  Identities=23%  Similarity=0.312  Sum_probs=58.6

Q ss_pred             ccCcccccCcCCCCCH--HHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhcc
Q 007551            5 KRCLYEVLGLRKECTT--DEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~--~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (599)
                      ..+||+||||+++|+.  .+||+|||+|+++||||++  ++      .++|+.|++||+||+||.+|+.||.++
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~--~~------~e~f~~I~~AYevL~d~~~R~~~~~~~   72 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG--GD------EEKMKKMNTLYKKMEDGVKYAHQPDFG   72 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTC--CT------TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCC--cc------HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence            3689999999999999  9999999999999999998  22      468999999999999999999999865

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.54  E-value=1.4e-15  Score=130.95  Aligned_cols=64  Identities=20%  Similarity=0.195  Sum_probs=57.2

Q ss_pred             CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhh
Q 007551            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKER   69 (599)
Q Consensus         3 ~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR   69 (599)
                      ....++|+||||.++||.++||+|||+|+++||||++  ++ ..+.|.+.|+.|++||+||+|...|
T Consensus        13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~--~~-~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKN--PE-NHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTS--SS-CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC-chHHHHHHHHHHHHHHHHHHhhccc
Confidence            3456899999999999999999999999999999998  33 4467899999999999999998776

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.54  E-value=4.2e-15  Score=146.40  Aligned_cols=72  Identities=19%  Similarity=0.302  Sum_probs=61.7

Q ss_pred             CccCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551            4 EKRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (599)
Q Consensus         4 ~~~d~YeVLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~-~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (599)
                      ...|||+||||++.  ++..+||++||+|+++||||++...+. ....|.+.|+.|++||+||+||.+|+.||..
T Consensus        41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~  115 (207)
T 3bvo_A           41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK  115 (207)
T ss_dssp             TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            46799999999986  799999999999999999999943211 1234788999999999999999999999974

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.53  E-value=1.1e-15  Score=146.87  Aligned_cols=65  Identities=23%  Similarity=0.312  Sum_probs=57.2

Q ss_pred             ccCcccccCcCCCCC--HHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551            5 KRCLYEVLGLRKECT--TDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (599)
Q Consensus         5 ~~d~YeVLGV~~~As--~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (599)
                      ..+||+||||+++|+  .++||+|||+||+++|||++  ++      .++|+.|++||+||+||.+|+.||.+|.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~--~~------~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG--GD------EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC-----C------CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCC--CC------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            468999999999998  69999999999999999998  22      3689999999999999999999999874

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.52  E-value=3.5e-15  Score=144.13  Aligned_cols=66  Identities=23%  Similarity=0.411  Sum_probs=59.0

Q ss_pred             cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhh
Q 007551            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWY   72 (599)
Q Consensus         6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~Y   72 (599)
                      .|||+||||+++||..+||+|||+|+++||||++... .....|.+.|+.|++||+||+||.+|+.|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~-~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQ-PYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSC-TTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCc-chHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            6899999999999999999999999999999999422 12234899999999999999999999987

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.52  E-value=4.3e-15  Score=131.98  Aligned_cols=63  Identities=25%  Similarity=0.296  Sum_probs=54.0

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCH---HHHHHHHHHHHHHHHhcCChh
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQ---AEATAQFQELVHAYEVLSDPK   67 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~---~ea~~~F~~I~~AYeVLsDp~   67 (599)
                      ...|||.|||++. ||..+||+|||+|+++|||||+..++.+.   ..|.++|+.|++||+||+||.
T Consensus        39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            3579999999996 99999999999999999999995333222   257999999999999999985

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.50  E-value=3.6e-15  Score=125.59  Aligned_cols=61  Identities=28%  Similarity=0.329  Sum_probs=55.0

Q ss_pred             ccCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhh
Q 007551            5 KRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYD   73 (599)
Q Consensus         5 ~~d~YeVLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YD   73 (599)
                      ..++|+||||+++  ||..+||+|||+|+++||||++.        +.+.|+.|++||+||+||..|..++
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~--------~~~~f~~i~~AYe~L~~~~~r~~~~   72 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG--------SHALMQELNSLWGTFKTEVYNLRMN   72 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC--------CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC--------CHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            3579999999999  99999999999999999999982        2578999999999999999998744

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.50  E-value=3.2e-15  Score=170.26  Aligned_cols=76  Identities=38%  Similarity=0.563  Sum_probs=40.9

Q ss_pred             CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhcc
Q 007551            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS   82 (599)
Q Consensus         3 ~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~   82 (599)
                      ....|||+||||+++||.++||+|||+|+++||||++.  +  .+.|.++|+.|++||+||+||.+|+.||.+|..++..
T Consensus        18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~--~--~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~   93 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNP--N--NPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED   93 (780)
T ss_dssp             -----CHHHHTCCTTCCHHHHHHHHCC---------------------------CTHHHHHHSHHHHHHHTTC-------
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C--ChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccccc
Confidence            34679999999999999999999999999999999983  2  2468899999999999999999999999998766544

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.48  E-value=1.1e-14  Score=126.38  Aligned_cols=58  Identities=24%  Similarity=0.430  Sum_probs=51.4

Q ss_pred             cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCC-HHHHHHHHHHHHHHHHhcCC
Q 007551            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLS-QAEATAQFQELVHAYEVLSD   65 (599)
Q Consensus         6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~-~~ea~~~F~~I~~AYeVLsD   65 (599)
                      .++|++|||++.||..+||+|||+||++|||||+  ++.. ...|...|+.|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~--~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKA--TGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHH--TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCC--CCchhHhHHHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999999  3322 34689999999999999964

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.45  E-value=1.6e-14  Score=139.45  Aligned_cols=67  Identities=28%  Similarity=0.425  Sum_probs=59.6

Q ss_pred             CCccCccccc------CcCC-CCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551            3 SEKRCLYEVL------GLRK-ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (599)
Q Consensus         3 ~~~~d~YeVL------GV~~-~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (599)
                      +...|||+||      |+++ +||..+||+|||+|+++||||++.  +     +...|+.|++||+||+||.+|+.||..
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~--~-----a~~~f~~i~~AY~vL~dp~~R~~Yd~~   80 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQ--Q-----GSEQSSTLNQAYHTLKDPLRRSQYMLK   80 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCC--S-----CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCc--c-----HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence            4568999999      4665 899999999999999999999993  2     567899999999999999999999985


Q ss_pred             c
Q 007551           76 R   76 (599)
Q Consensus        76 r   76 (599)
                      .
T Consensus        81 l   81 (181)
T 3uo3_A           81 L   81 (181)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.42  E-value=3e-14  Score=117.50  Aligned_cols=56  Identities=20%  Similarity=0.269  Sum_probs=50.6

Q ss_pred             cCcccccCcCC-CCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhh
Q 007551            6 RCLYEVLGLRK-ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKER   69 (599)
Q Consensus         6 ~d~YeVLGV~~-~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR   69 (599)
                      .++|+||||++ +||..+||+|||+|+++||||++.        ....|+.|++||+||+|+..|
T Consensus        14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g--------~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG--------SPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC--------CHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC--------CHHHHHHHHHHHHHHhhhhhc
Confidence            57999999999 799999999999999999999971        235999999999999998766

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.81  E-value=2.2e-09  Score=110.00  Aligned_cols=69  Identities=41%  Similarity=0.675  Sum_probs=56.5

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS   74 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs   74 (599)
                      ..++|.+||+.+.++..+|+++|+++++++|||+...+ ...+.+...|+.|.+||+||+||.+|..||.
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~-~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE-EEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSH-HHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            35899999999999999999999999999999998321 1135689999999999999999999999997

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.30  E-value=3e-07  Score=74.78  Aligned_cols=50  Identities=16%  Similarity=0.117  Sum_probs=44.4

Q ss_pred             CcccccCcCCC---CCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcC
Q 007551            7 CLYEVLGLRKE---CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS   64 (599)
Q Consensus         7 d~YeVLGV~~~---As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLs   64 (599)
                      .-|.||||++.   ++.++|+++||+|...+|||+..        ..-.+..|+.|+++|.
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGG--------S~yl~~ki~~Ake~l~   57 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGG--------SFYLQSKVYRAAERLK   57 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTC--------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCC--------CHHHHHHHHHHHHHHH
Confidence            46899999999   99999999999999999999972        2567888999999985

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=98.02  E-value=1.9e-06  Score=78.44  Aligned_cols=35  Identities=26%  Similarity=0.528  Sum_probs=33.1

Q ss_pred             CccccccccccccChHHHHHhHhhHHHHHHHHHHH
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR  331 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~  331 (599)
                      ..|||+.|+|.|.+..+|.+|++||+|+++|..|+
T Consensus        49 kpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~   83 (124)
T 1zr9_A           49 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLS   83 (124)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhc
Confidence            57999999999999999999999999999999875

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.35  E-value=8.1e-05  Score=67.59  Aligned_cols=36  Identities=19%  Similarity=0.253  Sum_probs=33.2

Q ss_pred             cCccccccccccccChHHHHHhHhhHHHHHHHHHHH
Q 007551          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR  331 (599)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~  331 (599)
                      ...|||.+|++.|.|..++..|.++|+|+++|.+++
T Consensus        91 ~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A           91 DRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             CTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             CCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence            467899999999999999999999999999998764

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=97.29  E-value=7e-05  Score=80.25  Aligned_cols=65  Identities=18%  Similarity=0.309  Sum_probs=55.9

Q ss_pred             CccccccccccccChHHHHHhHhhHHHHHHHHHHHH------------HhhhhhhHhhhccCCchhhhhhhhhhhcc
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE------------SFVDEDEVMADFGELDGEVEELGERFKDN  361 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~------------~~~~e~~~~~~~~~~~~~~~~~~e~~~e~  361 (599)
                      ..+||.+|+|.|++++.+.+|+.+|||++++++.+.            .++.+..+.+...+++..+.+.+|++.|.
T Consensus       291 ~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~k~iA~~E~~I~~l~~~L~~~~~~Tk~nVERKqa~T~~Ere~E~  367 (402)
T 4dgw_A          291 KGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRNFVYSEYKLHRYLKYLNDEFSRTRSFVERKLAFTANERMAEM  367 (402)
T ss_dssp             TEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             cCeeehhhhhhhccccccHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            468999999999999999999999999998755322            56678888888999999999999999874

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.49  E-value=0.0015  Score=59.11  Aligned_cols=37  Identities=35%  Similarity=0.426  Sum_probs=33.0

Q ss_pred             cCccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 007551          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE  332 (599)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~  332 (599)
                      ...++|.+|+..|.|..++..|.++++|+.+|..+..
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            3458999999999999999999999999999986654

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=96.32  E-value=0.0034  Score=52.62  Aligned_cols=43  Identities=30%  Similarity=0.567  Sum_probs=35.5

Q ss_pred             ccccccccccc--cChHHHHHhHhhHHHHHHHHHHHHHhhhhhhH
Q 007551          298 EFYCVLCGKKF--KSEKQWTNHEQSKKHKEKVADLRESFVDEDEV  340 (599)
Q Consensus       298 ~~~C~~C~K~F--~s~~~~~nH~~SKKHk~~~~~l~~~~~~e~~~  340 (599)
                      -|||..|+..|  -|....+.|++++||+.+|+..=+.+..+.+.
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy~~~~~~~~~   47 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCKWMEEQAQ   47 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999  44666899999999999999987777655443

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.74  E-value=0.016  Score=62.26  Aligned_cols=38  Identities=24%  Similarity=0.441  Sum_probs=34.0

Q ss_pred             ccccccccc------cccChHHHHHhHhhHHHHHHHHHHHHHhh
Q 007551          298 EFYCVLCGK------KFKSEKQWTNHEQSKKHKEKVADLRESFV  335 (599)
Q Consensus       298 ~~~C~~C~K------~F~s~~~~~nH~~SKKHk~~~~~l~~~~~  335 (599)
                      .++|.+|++      ++..+.+|..|++|++|+.+|+..++.-.
T Consensus       360 ~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~~~  403 (409)
T 3eph_A          360 HYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQAD  403 (409)
T ss_dssp             EEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred             ceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            468999999      89999999999999999999998876543

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=92.72  E-value=0.061  Score=33.22  Aligned_cols=22  Identities=23%  Similarity=0.676  Sum_probs=20.2

Q ss_pred             cccccccccccChHHHHHhHhh
Q 007551          299 FYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      |.|..|+|.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH
Confidence            6799999999999999999864

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=92.11  E-value=0.082  Score=33.01  Aligned_cols=23  Identities=26%  Similarity=0.687  Sum_probs=20.9

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|++.|.+...|..|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHH
Confidence            47899999999999999999865

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.07  E-value=0.066  Score=33.45  Aligned_cols=23  Identities=30%  Similarity=0.749  Sum_probs=20.7

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|+|.|.+...|..|.++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTT
T ss_pred             CccCCCCCcccCCHHHHHHHHHh
Confidence            47899999999999999999864

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.00  E-value=0.071  Score=33.18  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=20.7

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|+|.|.+...|..|++.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHHH
Confidence            47899999999999999999853

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=91.26  E-value=0.086  Score=33.07  Aligned_cols=23  Identities=22%  Similarity=0.405  Sum_probs=20.7

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|+|.|.....|..|.++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTT
T ss_pred             CcCCCCCCcccCCHHHHHHHHHh
Confidence            47899999999999999999864

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=90.95  E-value=0.093  Score=32.84  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|++.|.+...|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILL   24 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTG
T ss_pred             CccCCCCCchhCCHHHHHHHHHH
Confidence            37899999999999999999865

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=90.79  E-value=0.12  Score=34.20  Aligned_cols=23  Identities=26%  Similarity=0.563  Sum_probs=20.6

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|+|.|.+...|..|+++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~   24 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITL   24 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHHH
Confidence            37899999999999999999864

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=90.73  E-value=0.12  Score=32.17  Aligned_cols=23  Identities=26%  Similarity=0.579  Sum_probs=20.7

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|++.|.+...|..|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHH
Confidence            47899999999999999999864

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=90.63  E-value=0.12  Score=32.35  Aligned_cols=23  Identities=22%  Similarity=0.615  Sum_probs=20.7

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|++.|.+...|..|++.
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLET   25 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHHH
Confidence            47899999999999999999764

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=89.99  E-value=0.049  Score=33.68  Aligned_cols=23  Identities=35%  Similarity=0.749  Sum_probs=20.5

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|+|.|.+...|..|+++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            37899999999999999999864

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=90.54  E-value=0.16  Score=33.99  Aligned_cols=24  Identities=21%  Similarity=0.534  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCccCCCCCcccCcHHHHHHHHHH
Confidence            468999999999999999999764

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=90.51  E-value=0.12  Score=33.95  Aligned_cols=24  Identities=38%  Similarity=0.648  Sum_probs=21.3

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|.+.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~   29 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIRE   29 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHHHH
Confidence            458999999999999999999764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.50  E-value=0.12  Score=34.43  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|++.|.+...|..|+++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCccCCCCCchhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.49  E-value=0.14  Score=33.88  Aligned_cols=24  Identities=38%  Similarity=0.724  Sum_probs=21.4

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|++.
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKLL   31 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCeecCcCCCCcCchHHHHHHHHH
Confidence            458999999999999999999863

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=90.27  E-value=0.13  Score=31.84  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=20.5

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|++.|.+...|..|++.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH
Confidence            46899999999999999999864

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.21  E-value=0.13  Score=34.08  Aligned_cols=24  Identities=13%  Similarity=0.266  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|++.|.+...|..|+++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=90.11  E-value=0.14  Score=31.93  Aligned_cols=23  Identities=13%  Similarity=0.405  Sum_probs=20.5

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|++.|.+...|..|++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHH
Confidence            36899999999999999999864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.08  E-value=0.13  Score=34.31  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|++.|.....|..|+++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            458999999999999999999865

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=89.75  E-value=0.16  Score=33.54  Aligned_cols=24  Identities=21%  Similarity=0.528  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|++.|.+...|..|++.
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~~   29 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHH
Confidence            458899999999999999999864

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.60  E-value=0.16  Score=33.94  Aligned_cols=24  Identities=21%  Similarity=0.630  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|++.|.+...|..|.++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHHH
T ss_pred             CCcCCCCCCCccCCHHHHHHHHHH
Confidence            458899999999999999999864

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.40  E-value=0.16  Score=33.77  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|++.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCEECCCCCceeCCHHHHHHHHHH
Confidence            468999999999999999999864

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=88.48  E-value=0.08  Score=33.35  Aligned_cols=23  Identities=30%  Similarity=0.687  Sum_probs=20.5

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|++.|.+...|..|++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQ   24 (29)
Confidence            37899999999999999999863

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=88.34  E-value=0.083  Score=33.25  Aligned_cols=23  Identities=17%  Similarity=0.574  Sum_probs=20.7

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|++.|.+...|..|.++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            47899999999999999999864

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=88.56  E-value=0.19  Score=34.21  Aligned_cols=24  Identities=21%  Similarity=0.632  Sum_probs=21.4

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~~   28 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMNV   28 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHT
T ss_pred             CceECCCCCcccCCHHHHHHHHHH
Confidence            358899999999999999999864

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.48  E-value=0.18  Score=33.76  Aligned_cols=24  Identities=17%  Similarity=0.336  Sum_probs=21.3

Q ss_pred             CccccccccccccCh-HHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSE-KQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~-~~~~nH~~S  320 (599)
                      ..|.|..|++.|.+. ..|..|+++
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CCeECCCCChhhccCHHHHHHHHHh
Confidence            458999999999999 999999864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.22  E-value=0.22  Score=34.94  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHERT   34 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGG
T ss_pred             cCeECCCCCcccCchHHHHHHHhH
Confidence            468999999999999999999864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.19  E-value=0.28  Score=33.66  Aligned_cols=24  Identities=17%  Similarity=0.583  Sum_probs=21.4

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|.++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQKM   32 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            458999999999999999999764

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=88.13  E-value=0.21  Score=31.42  Aligned_cols=21  Identities=24%  Similarity=0.643  Sum_probs=19.0

Q ss_pred             ccccccccccccChHHHHHhH
Q 007551          298 EFYCVLCGKKFKSEKQWTNHE  318 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~  318 (599)
                      .|.|..|++.|.+...|..|.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHHH
Confidence            478999999999999999993

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.10  E-value=0.24  Score=34.89  Aligned_cols=24  Identities=29%  Similarity=0.642  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQKI   34 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCEECCccCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.88  E-value=0.25  Score=34.07  Aligned_cols=24  Identities=21%  Similarity=0.643  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLRI   33 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTTT
T ss_pred             CCEECCCCCCccCCHHHHHHHHHh
Confidence            468999999999999999999864

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=87.71  E-value=0.25  Score=30.61  Aligned_cols=23  Identities=22%  Similarity=0.716  Sum_probs=20.6

Q ss_pred             ccccc--cccccccChHHHHHhHhh
Q 007551          298 EFYCV--LCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~--~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|.  .|+|.|.+...|..|++.
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            36799  999999999999999864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.58  E-value=0.31  Score=34.37  Aligned_cols=24  Identities=29%  Similarity=0.517  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQRI   34 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCEECCccCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.54  E-value=0.29  Score=34.39  Aligned_cols=24  Identities=29%  Similarity=0.599  Sum_probs=21.8

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQRI   34 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHGG
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHH
Confidence            458999999999999999999875

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.47  E-value=0.31  Score=34.33  Aligned_cols=24  Identities=25%  Similarity=0.576  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRGI   34 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             cCeECCCCCcccCCHHHHHHHHHh
Confidence            458999999999999999999864

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.43  E-value=0.27  Score=34.13  Aligned_cols=24  Identities=29%  Similarity=0.657  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTRT   34 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHTT
T ss_pred             cCeECCCCCCccCCHHHHHHHhhh
Confidence            458999999999999999999864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.38  E-value=0.26  Score=34.68  Aligned_cols=24  Identities=25%  Similarity=0.606  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQRI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHhH
Confidence            458999999999999999999875

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.34  E-value=0.29  Score=34.21  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQAL   34 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.28  E-value=0.29  Score=34.43  Aligned_cols=24  Identities=25%  Similarity=0.661  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQRV   34 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.28  E-value=0.34  Score=34.01  Aligned_cols=24  Identities=25%  Similarity=0.593  Sum_probs=21.4

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|++.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQKC   34 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             CCccCCccChhhCCHHHHHHHHHh
Confidence            458999999999999999999753

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.27  E-value=0.26  Score=34.65  Aligned_cols=24  Identities=29%  Similarity=0.678  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eor_A           11 KPYNCEECGKAFIHDSQLQEHQRI   34 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCccCCCCCCCcCCHHHHHHHHHh
Confidence            458999999999999999999864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=87.26  E-value=0.3  Score=33.58  Aligned_cols=24  Identities=29%  Similarity=0.746  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|++.|.+...|..|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQRT   32 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCccCCCcChhhCCHHHHHHHHHh
Confidence            458999999999999999999864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=87.25  E-value=0.26  Score=34.81  Aligned_cols=24  Identities=33%  Similarity=0.697  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQRI   34 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCEECCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.21  E-value=0.26  Score=34.68  Aligned_cols=24  Identities=21%  Similarity=0.679  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQKT   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.17  E-value=0.3  Score=33.87  Aligned_cols=24  Identities=21%  Similarity=0.560  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eof_A           11 KPYECNECQKAFNTKSNLMVHQRT   34 (44)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHhHHHHHHHH
Confidence            458999999999999999999864

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.04  E-value=0.28  Score=34.73  Aligned_cols=24  Identities=25%  Similarity=0.710  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHSV   34 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTTT
T ss_pred             cccCCCCCCcccCcHHHHHHHHHh
Confidence            458999999999999999999864

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=87.04  E-value=0.3  Score=33.47  Aligned_cols=24  Identities=29%  Similarity=0.695  Sum_probs=21.3

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~~   33 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQRS   33 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHhhh
Confidence            458999999999999999999753

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.92  E-value=0.29  Score=34.53  Aligned_cols=24  Identities=25%  Similarity=0.605  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enh_A           11 KPYECDVCRKAFSHHASLTQHQRV   34 (46)
T ss_dssp             SSCBCTTTCCBCSSSHHHHHHGGG
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHH
Confidence            458999999999999999999864

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.90  E-value=0.27  Score=34.15  Aligned_cols=24  Identities=29%  Similarity=0.740  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQKT   34 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHTT
T ss_pred             cCeeCCCCCCccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.85  E-value=0.29  Score=34.40  Aligned_cols=24  Identities=25%  Similarity=0.635  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGG
T ss_pred             cCEECCCCChhhCChHHHHHHHHh
Confidence            458999999999999999999864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.83  E-value=0.32  Score=34.31  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=21.3

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKRV   34 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHH
Confidence            458899999999999999999753

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.81  E-value=0.3  Score=34.37  Aligned_cols=24  Identities=25%  Similarity=0.584  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHTT
T ss_pred             cCeECCCCCcccCChhHHHHHhHh
Confidence            458999999999999999999864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.81  E-value=0.29  Score=34.58  Aligned_cols=24  Identities=33%  Similarity=0.639  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yto_A           11 KPYKCSDCGKAFTRKSGLHIHQQS   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCEECcccCCccCCHhHHHHHHHH
Confidence            458999999999999999999864

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=86.80  E-value=0.35  Score=30.91  Aligned_cols=23  Identities=30%  Similarity=0.882  Sum_probs=20.4

Q ss_pred             ccccc--cccccccChHHHHHhHhh
Q 007551          298 EFYCV--LCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~--~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|.  .|+|.|.+...|..|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~   26 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHH
Confidence            46797  999999999999999864

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.77  E-value=0.26  Score=33.29  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.4

Q ss_pred             CccccccccccccChHHHHHh-Hh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNH-EQ  319 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH-~~  319 (599)
                      ..|.|..|+|.|.+...|..| .+
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H~~~   31 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRHVIQ   31 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH
Confidence            458899999999999999999 53

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.73  E-value=0.33  Score=34.35  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eom_A           11 RGHRCSDCGKFFLQASNFIQHRRI   34 (46)
T ss_dssp             SSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCcCCCCCCCeeCChHHHHHHHHH
Confidence            458999999999999999999764

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.69  E-value=0.28  Score=34.48  Aligned_cols=24  Identities=29%  Similarity=0.659  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQRI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            458999999999999999999864

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=86.66  E-value=0.33  Score=34.89  Aligned_cols=24  Identities=29%  Similarity=0.566  Sum_probs=21.4

Q ss_pred             cCccccccccccccChHHHHHhHh
Q 007551          296 RSEFYCVLCGKKFKSEKQWTNHEQ  319 (599)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~  319 (599)
                      ...+||..|+-.|.+...|.+|.+
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhe
Confidence            456899999999999999999964

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.65  E-value=0.33  Score=34.23  Aligned_cols=24  Identities=25%  Similarity=0.692  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQRV   34 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.60  E-value=0.31  Score=33.98  Aligned_cols=24  Identities=21%  Similarity=0.585  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|++.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQKT   34 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGGG
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.57  E-value=0.31  Score=33.38  Aligned_cols=24  Identities=25%  Similarity=0.538  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIRV   33 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGGG
T ss_pred             CCeeCCCccchhCCHHHHHHHHHH
Confidence            458999999999999999999864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.55  E-value=0.34  Score=33.20  Aligned_cols=24  Identities=33%  Similarity=0.656  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|++.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHERI   32 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGGG
T ss_pred             CCeECCCCCCCcCCHHHHHHHHHH
Confidence            458899999999999999999864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.48  E-value=0.29  Score=34.57  Aligned_cols=24  Identities=25%  Similarity=0.595  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQRI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCcCCcccCCHHHHHHHHHH
Confidence            458899999999999999999874

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.47  E-value=0.37  Score=33.78  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eop_A           11 KPHECRECGKSFSFNSQLIVHQRI   34 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCeeCCCCCchhCCHHHHHHHHHH
Confidence            458999999999999999999865

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.47  E-value=0.29  Score=34.57  Aligned_cols=24  Identities=25%  Similarity=0.600  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoz_A           11 KPYSCNVCGKAFVLSAHLNQHLRV   34 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHHH
T ss_pred             CCeECcccChhhCCHHHHHHHHHH
Confidence            458999999999999999999764

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.42  E-value=0.34  Score=33.76  Aligned_cols=24  Identities=33%  Similarity=0.580  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (44)
T 2emx_A            9 KPFGCSCCEKAFSSKSYLLVHQQT   32 (44)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.42  E-value=0.36  Score=33.67  Aligned_cols=24  Identities=25%  Similarity=0.631  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTLQ   32 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHHH
T ss_pred             CCEECCCCCCeeCChHHHHHHHHh
Confidence            458999999999999999999864

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.38  E-value=0.34  Score=34.01  Aligned_cols=24  Identities=25%  Similarity=0.661  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eow_A           11 KPYKCNECGKAFRARSSLAIHQAT   34 (46)
T ss_dssp             CCEECTTSCCEESSHHHHHHHHHH
T ss_pred             CCeeccccCChhcCHHHHHHHHHH
Confidence            458999999999999999999864

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=86.35  E-value=0.35  Score=31.02  Aligned_cols=23  Identities=26%  Similarity=0.561  Sum_probs=20.8

Q ss_pred             ccccc--cccccccChHHHHHhHhh
Q 007551          298 EFYCV--LCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~--~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|.  .|+|.|.+...|..|+++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~   27 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHH
Confidence            47899  899999999999999875

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.32  E-value=0.3  Score=34.26  Aligned_cols=24  Identities=29%  Similarity=0.631  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQAI   34 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHTT
T ss_pred             CCeECCCCChhhCCHHHHHHHHHH
Confidence            458899999999999999999864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.32  E-value=0.35  Score=34.13  Aligned_cols=24  Identities=33%  Similarity=0.758  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRRS   34 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHh
Confidence            458999999999999999999864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.30  E-value=0.37  Score=33.97  Aligned_cols=24  Identities=29%  Similarity=0.740  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQRV   34 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGGG
T ss_pred             cCCCCCCCCcccCCHHHHHHHHHh
Confidence            458999999999999999999864

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=86.26  E-value=0.42  Score=33.67  Aligned_cols=24  Identities=25%  Similarity=0.639  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emk_A           11 KPYECKECGKAFSQTTHLIQHQRV   34 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHHH
T ss_pred             CceECCCCCchhCCHHHHHHHHHH
Confidence            458999999999999999999864

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.25  E-value=0.4  Score=33.86  Aligned_cols=24  Identities=29%  Similarity=0.704  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytm_A           11 KPYKCMECGKAFGDNSSCTQHQRL   34 (46)
T ss_dssp             CSSSBTTTTBCCSSHHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHH
Confidence            458899999999999999999865

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.19  E-value=0.42  Score=33.57  Aligned_cols=24  Identities=25%  Similarity=0.584  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGGG
T ss_pred             cCeECCCCCCeeCCHHHHHHHhhh
Confidence            458999999999999999999864

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.15  E-value=0.32  Score=34.19  Aligned_cols=24  Identities=29%  Similarity=0.686  Sum_probs=21.8

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emy_A           11 NPYECHECGKAFSRKYQLISHQRT   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCcCCCCCCcccCcHHHHHHHHHH
Confidence            458999999999999999999865

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.09  E-value=0.35  Score=34.05  Aligned_cols=24  Identities=29%  Similarity=0.677  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQVI   34 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHTT
T ss_pred             CCeECCcCChhhCCHHHHHHHHHH
Confidence            458999999999999999999864

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.06  E-value=0.34  Score=34.18  Aligned_cols=24  Identities=21%  Similarity=0.560  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCcCCCccCCHHHHHHHHHH
Confidence            458999999999999999999865

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.05  E-value=0.39  Score=33.74  Aligned_cols=24  Identities=29%  Similarity=0.650  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRRI   34 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHTT
T ss_pred             CCeECCCCCceeCCHHHHHHHHHH
Confidence            458999999999999999999864

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.02  E-value=0.33  Score=33.35  Aligned_cols=24  Identities=21%  Similarity=0.490  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2en2_A           10 KPYKCETCGARFVQVAHLRAHVLI   33 (42)
T ss_dssp             CSEECTTTCCEESSHHHHHHHTHH
T ss_pred             CCEeCCCcChhhCCHHHHHHHHHH
Confidence            458999999999999999999863

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.01  E-value=0.37  Score=33.94  Aligned_cols=24  Identities=29%  Similarity=0.675  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQKI   34 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGGG
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH
Confidence            458999999999999999999874

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=85.97  E-value=0.37  Score=33.80  Aligned_cols=24  Identities=29%  Similarity=0.581  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2el4_A           11 KPYGCSQCAKTFSLKSQLIVHQRS   34 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHGGG
T ss_pred             CceECCCCCchhCCHHHHHHHHHH
Confidence            458999999999999999999865

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.91  E-value=0.45  Score=33.36  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=21.4

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq4_A           11 KLYNCKECGKSFSRAPCLLKHERL   34 (46)
T ss_dssp             CCCCBTTTTBCCSCHHHHHHHHHH
T ss_pred             CCeECCCCCCccCchHHHHHHHHh
Confidence            458999999999999999999754

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.88  E-value=0.28  Score=34.61  Aligned_cols=24  Identities=38%  Similarity=0.610  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHERI   34 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHTT
T ss_pred             CCEECcCCCCcCCCHHHHHHHHHH
Confidence            458999999999999999999864

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.88  E-value=0.32  Score=34.21  Aligned_cols=24  Identities=25%  Similarity=0.645  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQKI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH
Confidence            458999999999999999999864

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.88  E-value=0.33  Score=34.05  Aligned_cols=24  Identities=25%  Similarity=0.603  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQRT   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHT
T ss_pred             CCcCCCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.88  E-value=0.45  Score=33.50  Aligned_cols=24  Identities=21%  Similarity=0.534  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2elz_A           11 KPYKCEDCGKGYNRRLNLDMHQRV   34 (46)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CCeeCcccCchhCCHHHHHHHHHh
Confidence            458999999999999999999874

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=85.87  E-value=0.34  Score=34.21  Aligned_cols=22  Identities=32%  Similarity=0.764  Sum_probs=20.6

Q ss_pred             CccccccccccccChHHHHHhH
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHE  318 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~  318 (599)
                      ..|.|..|+|.|.....|..|+
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            4689999999999999999997

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.85  E-value=0.3  Score=34.37  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en3_A           11 KPFQCKECGMNFSWSCSLFKHLRS   34 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHHH
T ss_pred             CCeeCcccChhhCCHHHHHHHHHH
Confidence            458999999999999999999854

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.85  E-value=0.42  Score=33.58  Aligned_cols=24  Identities=29%  Similarity=0.670  Sum_probs=21.4

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|.++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSMV   34 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCcCCCcCCchhCCHHHHHHHHHH
Confidence            458999999999999999999764

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.83  E-value=0.39  Score=33.77  Aligned_cols=24  Identities=25%  Similarity=0.697  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eml_A           11 KPYECSVCGKAFSHRQSLSVHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCeeCCCcCCccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=85.81  E-value=0.43  Score=33.53  Aligned_cols=24  Identities=17%  Similarity=0.372  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em0_A           11 KTWKCRECDMCFSQASSLRLHQNV   34 (46)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHGGG
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999875

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=85.79  E-value=0.32  Score=35.26  Aligned_cols=23  Identities=26%  Similarity=0.702  Sum_probs=21.0

Q ss_pred             CccccccccccccChHHHHHhHh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQ  319 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~  319 (599)
                      ..|.|..|+|.|.....|..|++
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHH
T ss_pred             cCEECCCcCcccCCHHHHHHHhh
Confidence            45899999999999999999986

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.79  E-value=0.41  Score=33.72  Aligned_cols=24  Identities=29%  Similarity=0.598  Sum_probs=21.8

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytt_A           11 KPYQCSECGKSFSGSYRLTQHWIT   34 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHTH
T ss_pred             CCeeCCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999875

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.76  E-value=0.34  Score=34.01  Aligned_cols=24  Identities=29%  Similarity=0.746  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQRI   34 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHTT
T ss_pred             cCccCCCCCCccCChHHHHHHHHH
Confidence            458999999999999999999864

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=85.65  E-value=0.39  Score=33.78  Aligned_cols=24  Identities=29%  Similarity=0.682  Sum_probs=21.8

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ema_A           11 KRYKCNECGKVFSRNSQLSQHQKI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTG
T ss_pred             cCcCCCCCcchhCCHHHHHHHHHh
Confidence            458999999999999999999875

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.61  E-value=0.32  Score=33.92  Aligned_cols=24  Identities=25%  Similarity=0.635  Sum_probs=21.4

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|++.|.+...|..|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2yu5_A           11 NPFKCSKCDRVFTQRNYLVQHERT   34 (44)
T ss_dssp             CSEECSSSSCEESSSHHHHHHHHH
T ss_pred             CCeECCCCCchhCCHHHHHHHhHh
Confidence            458999999999999999999864

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.58  E-value=0.42  Score=33.50  Aligned_cols=24  Identities=29%  Similarity=0.685  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQRI   34 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHGG
T ss_pred             CCeECCCcChhhCCHHHHHHHHHH
Confidence            458999999999999999999864

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.57  E-value=0.41  Score=33.54  Aligned_cols=24  Identities=25%  Similarity=0.645  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytr_A           11 KPYKCNECGKAFSQTSKLARHQRI   34 (46)
T ss_dssp             CTTCCTTTCCCCSSHHHHHHHHTT
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHh
Confidence            458899999999999999999864

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.49  E-value=0.36  Score=33.94  Aligned_cols=24  Identities=25%  Similarity=0.744  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emh_A           11 RPYICTVCGKAFTDRSNLIKHQKI   34 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHh
Confidence            458999999999999999999864

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.44  E-value=0.37  Score=33.89  Aligned_cols=24  Identities=25%  Similarity=0.654  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytj_A           11 KPYICAECGKAFTIRSNLIKHQKI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCeECCCCChhhCCHHHHHHHHHH
Confidence            458999999999999999999864

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.43  E-value=0.46  Score=33.48  Aligned_cols=24  Identities=29%  Similarity=0.573  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLRL   34 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.38  E-value=0.47  Score=33.42  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytq_A           11 KPYGCSECGKAFSSKSYLIIHMRT   34 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCcCCCccChhhCChHHHHHHHHH
Confidence            458999999999999999999865

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=85.36  E-value=0.41  Score=33.76  Aligned_cols=24  Identities=33%  Similarity=0.659  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ely_A           11 KPFKCVECGKGFSRRSALNVHHKL   34 (46)
T ss_dssp             CSBCCSSSCCCBSSTTHHHHHHHH
T ss_pred             CCcccCccCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.25  E-value=0.4  Score=33.73  Aligned_cols=24  Identities=25%  Similarity=0.639  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ene_A           11 KPYKCNECGKVFRHNSYLSRHQRI   34 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCchhCChHHHHHHHhh
Confidence            458999999999999999999875

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.24  E-value=0.36  Score=33.97  Aligned_cols=24  Identities=25%  Similarity=0.627  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQLI   34 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH
Confidence            458999999999999999999865

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.19  E-value=0.44  Score=33.51  Aligned_cols=24  Identities=25%  Similarity=0.569  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHMV   34 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGGG
T ss_pred             cCccCCCccchhCCHHHHHHHHHH
Confidence            458999999999999999999865

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.19  E-value=0.42  Score=33.49  Aligned_cols=24  Identities=25%  Similarity=0.527  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeeCCCCChhhCCHHHHHHHHHH
Confidence            458999999999999999999864

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.19  E-value=0.41  Score=33.65  Aligned_cols=24  Identities=33%  Similarity=0.740  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.17  E-value=0.42  Score=33.58  Aligned_cols=24  Identities=33%  Similarity=0.628  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytk_A           11 KPYKCNECGKVFTQNSHLTNHWRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCEeCCcCCCccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.14  E-value=0.37  Score=33.77  Aligned_cols=24  Identities=29%  Similarity=0.534  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2epw_A           11 KPCKCTECGKAFCWKSQLIMHQRT   34 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHHH
T ss_pred             CCeeCCCCCCccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.11  E-value=0.41  Score=33.58  Aligned_cols=24  Identities=25%  Similarity=0.631  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|++.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCeECCCCChhhCCHHHHHHHHHh
Confidence            458999999999999999999864

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=85.09  E-value=0.38  Score=35.41  Aligned_cols=24  Identities=13%  Similarity=0.322  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        23 k~~~C~~C~k~f~~~~~L~~H~~~   46 (54)
T 1yui_A           23 QPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.01  E-value=0.29  Score=34.07  Aligned_cols=24  Identities=29%  Similarity=0.598  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2eox_A           11 KSYNCNECGKAFTRIFHLTRHQKI   34 (44)
T ss_dssp             CCEEETTTTEEESSSHHHHTTHHH
T ss_pred             CCeECcccCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=84.96  E-value=0.44  Score=33.38  Aligned_cols=24  Identities=25%  Similarity=0.595  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQRV   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGG
T ss_pred             cCeECCccccccCChHHHHHHHHH
Confidence            468999999999999999999865

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.91  E-value=0.42  Score=33.62  Aligned_cols=24  Identities=25%  Similarity=0.646  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en6_A           11 KPYGCNECGKTFSQKSILSAHQRT   34 (46)
T ss_dssp             CCEEETTTTEEESSHHHHHHHHHH
T ss_pred             cCeECCCCCcccCchHHHHHHHHH
Confidence            458899999999999999999864

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.90  E-value=0.44  Score=33.55  Aligned_cols=24  Identities=25%  Similarity=0.563  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoo_A           11 RPYGCNECGKNFGRHSHLIEHLKR   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCEEccccCcccCCHHHHHHHHHH
Confidence            458999999999999999999865

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.79  E-value=0.46  Score=33.37  Aligned_cols=24  Identities=29%  Similarity=0.588  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emp_A           11 KPYMCNECGKAFSVYSSLTTHQVI   34 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHHH
T ss_pred             cCeECCCCCchhCCHHHHHHHHHH
Confidence            458999999999999999999864

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.63  E-value=0.46  Score=33.46  Aligned_cols=24  Identities=29%  Similarity=0.648  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em8_A           11 KPYKCVECGKGYKRRLDLDFHQRV   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeECcccCchhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.62  E-value=0.46  Score=33.45  Aligned_cols=24  Identities=29%  Similarity=0.639  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCEECCcCCchhCCHHHHHHHHHH
Confidence            458999999999999999999764

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.58  E-value=0.47  Score=33.34  Aligned_cols=24  Identities=38%  Similarity=0.708  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2enc_A           11 KPFKCEECGKGFYTNSQCYSHQRS   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcCCCCCCCcCCChHHHHHHHHH
Confidence            458999999999999999999764

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.57  E-value=0.44  Score=33.46  Aligned_cols=24  Identities=25%  Similarity=0.566  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep0_A           11 KPYKCDVCHKSFRYGSSLTVHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeeCcccCcccCChHHHHHHHHH
Confidence            458999999999999999999864

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=84.54  E-value=0.49  Score=33.34  Aligned_cols=24  Identities=21%  Similarity=0.529  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2el6_A           11 NPYKCSQCEKSFSGKLRLLVHQRM   34 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999875

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.44  E-value=0.44  Score=33.50  Aligned_cols=24  Identities=25%  Similarity=0.654  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytd_A           11 KPYKCSECGKAFHRHTHLNEHRRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCeECCCCCCeeCChHHHHHHHHH
Confidence            458999999999999999999764

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.19  E-value=0.47  Score=33.24  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQRV   34 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCeECCCcCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=84.19  E-value=0.43  Score=34.12  Aligned_cols=24  Identities=29%  Similarity=0.648  Sum_probs=21.8

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (48)
T 2epr_A           11 KQVACEICGKIFRDVYHLNRHKLS   34 (48)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHh
Confidence            568999999999999999999864

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.10  E-value=0.46  Score=33.39  Aligned_cols=24  Identities=25%  Similarity=0.588  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ysp_A           11 KPYKCEKCGKGYNSKFNLDMHQKV   34 (46)
T ss_dssp             CSEEETTTTEEESCHHHHHHHHTT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHh
Confidence            458999999999999999999864

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.01  E-value=0.51  Score=33.12  Aligned_cols=23  Identities=26%  Similarity=0.627  Sum_probs=21.2

Q ss_pred             CccccccccccccChHHHHHhHh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQ  319 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~  319 (599)
                      ..|.|..|+|.|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CCEECCccCchhCChHHHHHHhH
Confidence            45899999999999999999987

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=83.97  E-value=0.54  Score=32.92  Aligned_cols=24  Identities=29%  Similarity=0.737  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.....|..|+++
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~   32 (45)
T 2epq_A            9 KPYSCPVCGLRFKRKDRMSYHVRS   32 (45)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=83.92  E-value=0.53  Score=34.36  Aligned_cols=23  Identities=30%  Similarity=0.508  Sum_probs=16.0

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|++.|.+...|..|+++
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~   26 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRT   26 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHH
T ss_pred             CccCCCCcchhCChHHHHHHHHH
Confidence            46677777777777777777653

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.86  E-value=0.5  Score=33.19  Aligned_cols=24  Identities=33%  Similarity=0.756  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en1_A           11 KPFKCEECGKRFTQNSQLHSHQRV   34 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGG
T ss_pred             CCeeCCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=83.67  E-value=0.46  Score=37.02  Aligned_cols=23  Identities=26%  Similarity=0.895  Sum_probs=18.9

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|+|.|.+...|..|+++
T Consensus         4 py~C~~C~k~F~~~~~L~~H~~~   26 (60)
T 4gzn_C            4 PFFCNFCGKTYRDASGLSRHRRA   26 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHH
T ss_pred             CccCCCCCCEeCCHHHHHHHHHH
Confidence            57888888888888888888764

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.64  E-value=0.54  Score=33.01  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.4

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yso_A           11 KSHQCRECGEIFFQYVSLIEHQVL   34 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCEEccccChhhCCHHHHHHHHHH
Confidence            458999999999999999999764

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=83.53  E-value=0.45  Score=34.77  Aligned_cols=25  Identities=32%  Similarity=0.646  Sum_probs=21.9

Q ss_pred             CccccccccccccChHHHHHhHhhH
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQSK  321 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~SK  321 (599)
                      ..|.|..|++.|.+...|..|+++.
T Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~h   52 (57)
T 1bbo_A           28 RPYHCTYCNFSFKTKGNLTKHMKSK   52 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CCccCCCCCchhcCHHHHHHHHHHh
Confidence            4589999999999999999998753

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.47  E-value=0.45  Score=33.43  Aligned_cols=24  Identities=25%  Similarity=0.630  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yu8_A           11 KPYKCNECGKVFTQNSHLARHRRV   34 (46)
T ss_dssp             SSEECSSSCCEESSSHHHHHHTHH
T ss_pred             CCeECCcCCchhCCHHHHHHHHHh
Confidence            458999999999999999999864

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.04  E-value=0.42  Score=33.58  Aligned_cols=24  Identities=29%  Similarity=0.667  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytg_A           11 KPFKCGECGKSYNQRVHLTQHQRV   34 (46)
T ss_dssp             CSEECTTTCCEESSSHHHHTTGGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=83.01  E-value=0.62  Score=34.00  Aligned_cols=22  Identities=23%  Similarity=0.585  Sum_probs=18.6

Q ss_pred             cccccccccccChHHHHHhHhh
Q 007551          299 FYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~   23 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRT   23 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CcCCCCcCcCCCHHHHHHHHHh
Confidence            6789999999999999888754

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=82.93  E-value=0.6  Score=34.54  Aligned_cols=23  Identities=26%  Similarity=0.687  Sum_probs=17.7

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|++.|.+...|..|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             cCcCCCCccccCCHHHHHHHHHH
Confidence            36788888888888888888764

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=82.90  E-value=0.59  Score=31.44  Aligned_cols=24  Identities=21%  Similarity=0.534  Sum_probs=20.9

Q ss_pred             Ccccccc--ccccccChHHHHHhHhh
Q 007551          297 SEFYCVL--CGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~--C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..  |+|.|.+...|..|+++
T Consensus         7 k~~~C~~~~C~k~f~~~~~L~~H~~~   32 (37)
T 1va1_A            7 KQHICHIQGCGKVYGKTSHLRAHLRW   32 (37)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            4588985  99999999999999864

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=82.18  E-value=0.7  Score=36.97  Aligned_cols=24  Identities=33%  Similarity=0.663  Sum_probs=21.8

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.....|..|++.
T Consensus        12 kpy~C~~CgK~F~~~s~L~~H~r~   35 (66)
T 2epp_A           12 GILPCGLCGKVFTDANRLRQHEAQ   35 (66)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             cCcCCCCCCCccCCHHHHHhhhhh
Confidence            568999999999999999999865

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=82.05  E-value=0.65  Score=35.07  Aligned_cols=24  Identities=25%  Similarity=0.513  Sum_probs=20.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|++.|.+...|..|+++
T Consensus        39 ~~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A           39 KVYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHHH
Confidence            458899999999999999999865

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.01  E-value=0.65  Score=32.95  Aligned_cols=24  Identities=13%  Similarity=0.200  Sum_probs=21.1

Q ss_pred             Ccccccc--ccccccChHHHHHhHhh
Q 007551          297 SEFYCVL--CGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~--C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..  |+|.|.....|..|++.
T Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~r~   33 (38)
T 2eln_A            8 ILLKCPTDGCDYSTPDKYKLQAHLKV   33 (38)
T ss_dssp             CCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            4689986  99999999999999864

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=81.97  E-value=0.59  Score=36.39  Aligned_cols=24  Identities=25%  Similarity=0.490  Sum_probs=22.0

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.....|..|++.
T Consensus        31 kp~~C~~C~k~F~~~~~L~~H~~~   54 (60)
T 4gzn_C           31 RPRSCPECGKCFRDQSEVNRHLKV   54 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGGG
T ss_pred             cCeECCCCCCCcCCHHHHHHHhCc
Confidence            568999999999999999999874

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=81.64  E-value=0.11  Score=34.18  Aligned_cols=23  Identities=26%  Similarity=0.622  Sum_probs=20.3

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|+|.|.+...|..|+++
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~   24 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKT   24 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHH
Confidence            47899999999999999999764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=81.32  E-value=0.66  Score=33.84  Aligned_cols=24  Identities=13%  Similarity=0.332  Sum_probs=21.7

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|++.|.+...|..|+++
T Consensus        31 ~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C           31 KPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcCCCCCcchhCCHHHHHHHHHH
Confidence            458999999999999999999864

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=80.64  E-value=0.88  Score=35.31  Aligned_cols=25  Identities=16%  Similarity=0.461  Sum_probs=20.5

Q ss_pred             cCccccccccccccChHHHHHhHhh
Q 007551          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ...|.|..|++.|.+...|..|+++
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~~   39 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKTV   39 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHHH
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHH
Confidence            3568899999999999999998753

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=80.13  E-value=0.83  Score=35.04  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=17.0

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|++.|.+...|..|+++
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~~   31 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERI   31 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            346777777777777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	599
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	6e-14
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	4e-12
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	5e-11
d1zr9a1	67	g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593	2e-10
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	2e-10
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	5e-10
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	1e-09
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	2e-08
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-06

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (159), Expect = 6e-14
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 3  SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLV--QSGLSQAEATAQFQELVHAY 60
          + K+  Y +LG        +++  Y+KL L  HPDK        +  E   +F E+  A+
Sbjct: 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72

Query: 61 EVLSDPKERAWYDSHRS 77
          ++L + + +  YD  RS
Sbjct: 73 KILGNEETKKKYDLQRS 89

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.7 bits (147), Expect = 4e-12
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
               ++ +G+    T ++++  Y+K  L  HPDK       +  A   F EL  A+   
Sbjct: 31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDK-ATGQPYEQYAKMIFMELNDAWSEF 89

Query: 64 SDPKERAWY 72
           +  ++  Y
Sbjct: 90 ENQGQKPLY 98

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 57.0 bits (137), Expect = 5e-11
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 9  YEVLGLRKECTTD--EIRSAYKKLALQRHPDKLVQSGLSQAEAT-AQFQELVHAYEVLSD 65
          + + GL      D   +   ++ L  Q HPDK      ++  A   Q   +  A++ L  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 66 PKERAWYD 73
          P  RA Y 
Sbjct: 64 PLMRAEYL 71

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 12/62 (19%), Positives = 22/62 (35%)

Query: 284 EEGLEEEEIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMAD 343
           +   E +          C+ C + F        H +SK HK+++  L      ++E    
Sbjct: 1   DPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERA 60

Query: 344 FG 345
            G
Sbjct: 61  AG 62

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 54.6 bits (131), Expect = 2e-10
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          K+  YE+LG+ K     EIR AYK+LA++ HPD+         EA A+F+E+  AYEVL+
Sbjct: 2  KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR----NQGDKEAEAKFKEIKEAYEVLT 57

Query: 65 DPKERAWYDSH 75
          D ++RA YD +
Sbjct: 58 DSQKRAAYDQY 68

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 53.9 bits (129), Expect = 5e-10
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 3  SEKRCLYEVLGLRKECTTD--EIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
          ++K  L E+L L ++   D   ++ AYK+ +L  HPD        +  + A  QEL   +
Sbjct: 8  ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPD--------KGGSHALMQELNSLW 59

Query: 61 EVLSDPKERAWYDSHRS 77
                      +   +
Sbjct: 60 GTFKTEVYNLRMNLGGT 76

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 1e-09
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 5/76 (6%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
           +  Y+ LGL +  + +EI+ AY++ AL+ HPDK       +  A  +F+E+  AY+VLS
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-----EPGAEEKFKEIAEAYDVLS 56

Query: 65 DPKERAWYDSHRSQIL 80
          DP++R  +D +  + L
Sbjct: 57 DPRKREIFDRYGEEGL 72

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
           S  + +  V+    +    E +   ++L L+ HPDK  ++     E     Q       
Sbjct: 12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQN---EIN 68

Query: 62 VLSDPKERAWYDSHRSQ 78
           L     +A+ D +  +
Sbjct: 69 RLEK---QAFLDQNADR 82

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 1  MASEKRCLYEVLGLRKECTTD--EIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVH 58
          M  E   L ++LGL +    +   +R AY K   + HPDK             + +++  
Sbjct: 3  MREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--------EEKMKKMNT 54

Query: 59 AYEVLSDPKERAWYDSH 75
           Y+ + D  + A     
Sbjct: 55 LYKKMEDGVKYAHQPDF 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	599
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.82
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.75
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.7
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.58
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.54
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.53
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.52
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	99.05
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	95.66
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	94.67
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	94.05
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	92.36
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	92.04
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	91.82
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	91.53
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	91.18
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	90.65
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	90.43
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	90.07
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	89.36
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	89.17
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	88.47
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	88.34
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	87.52
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	87.33
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	86.76
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	86.64
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	85.0
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	83.61
d1fu9a_	36	U-shaped transcription factor, different fingers {	82.09
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	81.64

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=6.6e-21  Score=157.28  Aligned_cols=70  Identities=47%  Similarity=0.756  Sum_probs=64.0

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (599)
                      ++|||+||||+++||..+||+|||+|+++||||++.  +  .+.+...|+.|++||+||+||.+|+.||.+|..
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~--~--~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   71 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQ--G--DKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCT--T--TCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccC--C--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcc
Confidence            689999999999999999999999999999999983  2  235788999999999999999999999998753

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.9e-20  Score=152.58  Aligned_cols=73  Identities=37%  Similarity=0.651  Sum_probs=66.0

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhcc
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS   82 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~   82 (599)
                      .+|||+||||+++||.++|++||++|++++|||++..     +.+.+.|+.|++||+||+||.+|+.||.+|..++.+
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~-----~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~g   74 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-----PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-----TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccc-----hhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcC
Confidence            4699999999999999999999999999999999832     247789999999999999999999999998876644

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2.9e-19  Score=153.45  Aligned_cols=74  Identities=28%  Similarity=0.488  Sum_probs=65.0

Q ss_pred             CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCC--CHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGL--SQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (599)
Q Consensus         4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~--~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (599)
                      .++|||+||||+++|+..+||+||++|++.||||++.....  ....+.+.|+.|++||+||+||.+|+.||..+.
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            46899999999999999999999999999999999843221  235688999999999999999999999998753

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.70  E-value=2.1e-19  Score=159.04  Aligned_cols=69  Identities=25%  Similarity=0.349  Sum_probs=60.4

Q ss_pred             CCCCccCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551            1 MASEKRCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (599)
Q Consensus         1 m~~~~~d~YeVLGV~~~A--s~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (599)
                      |.....+||+||||+++|  +..+||+|||+|||+|||||+  +.      .++|+.|++||+||+||.+|+.||.++.
T Consensus         3 ~~~~~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~--~~------~e~F~~I~~AY~vLsd~~kR~~YD~~~~   73 (114)
T d1gh6a_           3 MREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG--GD------EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTC--CT------TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             chHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccch--hh------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            334567899999999999  788999999999999999998  32      2479999999999999999999998643

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=3e-16  Score=128.97  Aligned_cols=69  Identities=26%  Similarity=0.365  Sum_probs=59.0

Q ss_pred             CcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551            7 CLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (599)
Q Consensus         7 d~YeVLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~-~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (599)
                      |||+||||+++  ++..+|++|||+|++.||||+....+. ....+...|+.|++||+||+||.+|+.|+-.
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~   73 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS   73 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            79999999985  458999999999999999999843221 2345889999999999999999999999864

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=1.2e-15  Score=131.74  Aligned_cols=67  Identities=22%  Similarity=0.403  Sum_probs=60.3

Q ss_pred             ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhh
Q 007551            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWY   72 (599)
Q Consensus         5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~Y   72 (599)
                      ..++|.+|||...+|.++||+|||++++.||||++..++ ....|...|+.|++||+||+||.+|+.|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~-~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP-YEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTST-THHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChH-HHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            457899999999999999999999999999999985332 4556899999999999999999999988

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.53  E-value=6e-16  Score=128.76  Aligned_cols=63  Identities=29%  Similarity=0.309  Sum_probs=57.2

Q ss_pred             ccCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551            5 KRCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (599)
Q Consensus         5 ~~d~YeVLGV~~~A--s~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (599)
                      ..+||+||||++++  |..+||+|||+|+++||||++.    +    .+.|++|++||+||+|+.+|..||..
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g----~----~e~~~~in~Ay~~L~d~~~r~~~~~~   74 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG----S----HALMQELNSLWGTFKTEVYNLRMNLG   74 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC----C----HHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCC----C----HHHHHHHHHHHHHHCCHHHHHHHccC
Confidence            46799999999987  9999999999999999999982    1    35899999999999999999999984

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.2e-15  Score=126.72  Aligned_cols=65  Identities=22%  Similarity=0.310  Sum_probs=58.0

Q ss_pred             cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhcc
Q 007551            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (599)
Q Consensus         6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (599)
                      +++|+||||..+||.++||+|||+|+++||||++  ++ ..+.|++.|+.|+.||++|+   .+..||...
T Consensus        16 ~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~--~~-~~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~   80 (88)
T d1iura_          16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKN--PE-NHDIANEVFKHLQNEINRLE---KQAFLDQNA   80 (88)
T ss_dssp             HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTS--SS-CHHHHHHHHHHHHHHHHHHH---HHTTCSSSS
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccc--cc-hhhHHHHHHHHHHHHHHHHH---HHHHhhccc
Confidence            6899999999999999999999999999999998  43 46789999999999999997   467777653

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.5e-11  Score=98.64  Aligned_cols=39  Identities=23%  Similarity=0.419  Sum_probs=35.9

Q ss_pred             cCccccccccccccChHHHHHhHhhHHHHHHHHHHHHHh
Q 007551          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF  334 (599)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~~~  334 (599)
                      ...|||++|+|.|+|+++|++|++||+|+++|++|+.++
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~~p   51 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEP   51 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTSCS
T ss_pred             CCEEecccccCccCCHHHHHHHHcccHHHHHHHHhccCc
Confidence            466999999999999999999999999999999997654

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=95.66  E-value=0.003  Score=47.64  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=29.5

Q ss_pred             cccccccccccChHHHHHhHhhHHHHHHHHHH
Q 007551          299 FYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL  330 (599)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l  330 (599)
                      -||.+|+.+|.|..+-+.|-..|+|.+++.+-
T Consensus        22 k~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          22 KCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             TEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             hhhhhhhcccCCHHHHHHHhhhhHHHHHHHHh
Confidence            48999999999999999999999999998743

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=94.67  E-value=0.011  Score=46.36  Aligned_cols=34  Identities=38%  Similarity=0.512  Sum_probs=31.1

Q ss_pred             CccccccccccccChHHHHHhHhhHHHHHHHHHH
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL  330 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l  330 (599)
                      .+.||.+|+-+..|+.|-..|-.||||..+|..+
T Consensus        31 td~~CkvC~a~L~seSQriaHYeskkHa~kvr~y   64 (72)
T d1zu1a1          31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRY   64 (72)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHH
T ss_pred             chhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3458999999999999999999999999999865

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.0047  Score=40.00  Aligned_cols=26  Identities=35%  Similarity=0.703  Sum_probs=24.4

Q ss_pred             cccccccccccChHHHHHhHhhHHHH
Q 007551          299 FYCVLCGKKFKSEKQWTNHEQSKKHK  324 (599)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~SKKHk  324 (599)
                      |.|..|+=.|++...|..|++||-|.
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkSKaH~   27 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKSKAHS   27 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             cccceeeeeEeeccchhHhhhhhhhc
Confidence            67999999999999999999999884

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.029  Score=43.13  Aligned_cols=37  Identities=32%  Similarity=0.631  Sum_probs=29.8

Q ss_pred             cccccccccccc--ChHHHHHhHhhHHHHHHHHHHHHHh
Q 007551          298 EFYCVLCGKKFK--SEKQWTNHEQSKKHKEKVADLRESF  334 (599)
Q Consensus       298 ~~~C~~C~K~F~--s~~~~~nH~~SKKHk~~~~~l~~~~  334 (599)
                      -|||..|+..|.  |...-+.|+..++|++++..-=+.+
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy~~~   41 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKW   41 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHTSSS
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHHHHHHH
Confidence            489999999996  3455689999999999998664444

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=92.04  E-value=0.037  Score=36.26  Aligned_cols=23  Identities=26%  Similarity=0.687  Sum_probs=21.1

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|+|.|.....|..|+++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~   24 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             cCCCCCCCCCCCCchHcccccCc
Confidence            47899999999999999999875

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.82  E-value=0.035  Score=37.97  Aligned_cols=24  Identities=21%  Similarity=0.528  Sum_probs=22.0

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      -.|.|.+|+|.|.....|..|++.
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~r~   29 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGG
T ss_pred             ccccCCCCCCcccChHHHHHHccc
Confidence            578999999999999999999864

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.53  E-value=0.04  Score=35.88  Aligned_cols=23  Identities=26%  Similarity=0.667  Sum_probs=21.2

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|+|.|.....|..|+++
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CccCCCCcCEecccccccccCCC
Confidence            58899999999999999999875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.18  E-value=0.046  Score=35.86  Aligned_cols=23  Identities=26%  Similarity=0.637  Sum_probs=21.3

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|+|.|.....|..|+++
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~   24 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKT   24 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHG
T ss_pred             CEECCcCCCeecchHHhhhhcCc
Confidence            47899999999999999999975

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.65  E-value=0.056  Score=34.70  Aligned_cols=23  Identities=30%  Similarity=0.741  Sum_probs=20.9

Q ss_pred             ccccccccccccChHHHHHhHhh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..|+|.|.....|..|.+.
T Consensus         2 Py~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccC
Confidence            47899999999999999999874

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=0.064  Score=36.16  Aligned_cols=24  Identities=29%  Similarity=0.656  Sum_probs=21.9

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.....|..|++.
T Consensus         6 kpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           6 KPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHG
T ss_pred             CCeeCCCCCCEeCchHHhHhhccc
Confidence            568999999999999999999874

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.07  E-value=0.07  Score=36.81  Aligned_cols=24  Identities=25%  Similarity=0.688  Sum_probs=21.9

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      -.|.|..|+|.|.....|..|.++
T Consensus        11 kpy~C~~CgK~F~~~s~L~~H~r~   34 (38)
T d2cota2          11 RRYKCDECGKSFSHSSDLSKHRRT   34 (38)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCEecCCCCceeeCHHHHHHhCcc
Confidence            568999999999999999999874

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.36  E-value=0.077  Score=36.31  Aligned_cols=25  Identities=20%  Similarity=0.481  Sum_probs=22.4

Q ss_pred             CccccccccccccChHHHHHhHhhH
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQSK  321 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~SK  321 (599)
                      -.|.|..|+|.|.....|..|+++.
T Consensus         7 kP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           7 KPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CCEeCCCCcccccchHHHHHHcccc
Confidence            5689999999999999999998753

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.08  Score=36.16  Aligned_cols=24  Identities=21%  Similarity=0.522  Sum_probs=21.8

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      -.|.|..|+|.|.....|..|++.
T Consensus         7 kPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           7 KPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCEECCCCCCCcCCHhHHHHhCcc
Confidence            468999999999999999999864

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.47  E-value=0.11  Score=35.53  Aligned_cols=24  Identities=21%  Similarity=0.534  Sum_probs=21.8

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      -.|.|..|+|.|.....|..|++.
T Consensus        10 KPy~C~~C~k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_          10 KPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             cCeEeCCCCCEecCHHHHHHHHhc
Confidence            578999999999999999999864

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.34  E-value=0.049  Score=36.73  Aligned_cols=22  Identities=41%  Similarity=0.919  Sum_probs=19.7

Q ss_pred             Cchhhhhcccchhhhhhhhhhc
Q 007551          568 SNVCEKCGQEFETRNKLHKHLG  589 (599)
Q Consensus       568 ~~~c~~c~~~f~sr~kl~~hl~  589 (599)
                      .-+|-.||.+|--||.|..|-.
T Consensus         4 afvcskcgktftrrntm~rha~   25 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHAD   25 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhh
Confidence            4689999999999999999964

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.52  E-value=0.11  Score=35.90  Aligned_cols=24  Identities=21%  Similarity=0.632  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.|..|+|.|.|-.+|--|+++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~   27 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNV   27 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHT
T ss_pred             CccCCCCCCCccCCcccccchHhh
Confidence            358999999999999999999865

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.33  E-value=0.16  Score=31.79  Aligned_cols=22  Identities=27%  Similarity=0.656  Sum_probs=20.1

Q ss_pred             cccccccccccChHHHHHhHhh
Q 007551          299 FYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      ..|.+|+|-|.-...++.|.+|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGG
T ss_pred             CccchhhhHhcchhHHHHHhhc
Confidence            3699999999999999999987

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.76  E-value=0.15  Score=33.57  Aligned_cols=23  Identities=30%  Similarity=0.736  Sum_probs=20.6

Q ss_pred             cccccc--ccccccChHHHHHhHhh
Q 007551          298 EFYCVL--CGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~--C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..  |+|.|.....|..|+++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRI   26 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCCceECcHHHcCccccc
Confidence            478988  99999999999999864

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.64  E-value=0.14  Score=35.65  Aligned_cols=24  Identities=25%  Similarity=0.631  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHhHhh
Q 007551          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (599)
                      -.|.|..|+|.|.....|..|+++
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r~   27 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIKQ   27 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCCCCcCChHHhhccCcC
Confidence            468999999999999999999763

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.00  E-value=0.23  Score=32.67  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             cccccc--ccccccChHHHHHhHhh
Q 007551          298 EFYCVL--CGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~--C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..  |+|.|.....|+.|+++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRS   26 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHH
T ss_pred             CeeCCCCCCCceECChhHhhhhcCc
Confidence            478988  99999999999999864

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.61  E-value=0.27  Score=35.58  Aligned_cols=24  Identities=33%  Similarity=0.652  Sum_probs=21.6

Q ss_pred             cCccccccccccccChHHHHHhHh
Q 007551          296 RSEFYCVLCGKKFKSEKQWTNHEQ  319 (599)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~  319 (599)
                      ...|-|-.|+|.|....++.||+.
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HEA   27 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHEA   27 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHH
T ss_pred             cceeeccccccccCCHHHHhHhHH
Confidence            456889999999999999999985

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.09  E-value=0.29  Score=33.26  Aligned_cols=22  Identities=32%  Similarity=0.668  Sum_probs=19.7

Q ss_pred             ccccccccccccChHHHHHhHh
Q 007551          298 EFYCVLCGKKFKSEKQWTNHEQ  319 (599)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~  319 (599)
                      .-||..|+-.|.+-+.|..|.+
T Consensus         8 ~rYC~~CDI~Fn~~~T~~aHKk   29 (36)
T d1fu9a_           8 KKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHHH
T ss_pred             hhHHhhCCceehhHHHHHHHHH
Confidence            3599999999999999999964

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.64  E-value=0.34  Score=32.22  Aligned_cols=23  Identities=26%  Similarity=0.598  Sum_probs=20.9

Q ss_pred             cccccc--ccccccChHHHHHhHhh
Q 007551          298 EFYCVL--CGKKFKSEKQWTNHEQS  320 (599)
Q Consensus       298 ~~~C~~--C~K~F~s~~~~~nH~~S  320 (599)
                      .|.|..  |+|.|.....|..|+++
T Consensus         3 P~~C~~pgC~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           3 PYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CeECcCCCCCCeeCCHHHHHHHhhh
Confidence            588988  99999999999999875