Citrus Sinensis ID: 007642

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-----

MESEDEFDMQDANASAEEDDFYSGGDDDAAPAYAFDSDDADVADYEFIDNDSDDSDDLVSNRHQLNYTVLTEADIRQRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEERVRKAVGLLEKPAVQFPDGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHGERTGGFYACNRYETAKQEGVYDESEKRREMAKNSLERYTHYYERWATNQSSRQKALADLQQMQTVHLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPDHEHAKRQFFEYLQGEAESGLERLHQCAEKELQIYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDTHATCSRTGSSKSLGGTSRGRSGKNKGSTSRSSGSNKNIDDSSHWYCDQCTYANVNSATACAMCQHSR

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccEEEcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHccccccccccccEEEccccccEEEcccccccEEccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccc

ccccHHccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccEEEccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHccHHHHHHHcccccccccccccccccEEEEEEcccccHHcccccccccHHHHHHHHHHHHHHcccccEEEEEccccccccEccHHHHHHHccHHHHHHHHHHHHHHHHccccccEEccccccccEEEEEccccccEEEEEcccEEEEcccccccccccHHHHHHHHHHcccccccHHHHHHcccccccccccEEcccccccEEEccccccEEEEEEccccccccccccccEccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHcccc

mesedefdmqdanasaeeddfysggdddaapayafdsddadvadyefidndsddsddlvsnrhqlnytvlTEADIRQRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEERVRKAVGLlekpavqfpdgeemtcgicfenypsdrllaaacghpfcsscwtgyistaindgpgclmlrcpdpscgaavgQDMIYLLSSDEDKVKYNRYFIRSYVednrktkwcpapgcdyavdfvvgsgnydvtcrcsysfcwncteeahrpvdcdtVAKWVLKNSAESENMNwilanskpcprckrpieknqgcmhmtctppckfefcwlclgqwsdhgertggfyacnryetakqegvydesEKRREMAKNSLERYTHYYERWATNQSSRQKALADLQQMQTVHLEklsdvqcqpesqLKFITEAWLQIVECRRVLKWTyaygyylpdhehAKRQFFEYLQGEAESGLERLHQCAEKELQIYlnadgpskdfneFRTKLAGLTSVTRNYFENLVRALENglsdvdthatcsrtgsskslggtsrgrsgknkgstsrssgsnkniddsshwycdqctyanvNSATACAMCQHSR

MESEDEFDMQDANASAEEDDFYSGGDDDAAPAYAFDSDDADVADYEFIDndsddsddlvsnrhqlnytvlteadirqrqEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEERVRKAVGLlekpavqfpdgeemTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLssdedkvkyNRYFIRsyvednrktkwcpaPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTEeahrpvdcdtVAKWVLKnsaesenmnwilanskpcprcKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHGERTGGFYACNRYETakqegvydesekrREMAKNSLERYTHYYERWATNQSSRQKALADLQQMQTVHLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPDHEHAKRQFFEYLQGEAESGLERLHQCAEKELQIYLNadgpskdfnEFRTKLAGLTSVTRNYFENLVRALEnglsdvdthatcsrtgsskslggtsrgrsgknkgstsrssgsnkniddSSHWYCDQCTYANVNSATACAMCQHSR

MESEDEFDMQDANASAEEDDFYSGGDDDAAPAYAFDSDDADVADYEFIdndsddsddLVSNRHQLNYTVLTEADIRQRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEERVRKAVGLLEKPAVQFPDGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHGERTGGFYACNRYETAKQEGVYDESEKRREMAKNSLERYTHYYERWATNQSSRQKALADLQQMQTVHLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPDHEHAKRQFFEYLQGEAESGLERLHQCAEKELQIYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDTHATCSRTGSSKSLGGTSRGRSGKNKGSTSRSSGSNKNIDDSSHWYCDQCTYANVNSATACAMCQHSR

**************************************************************HQLNYTVLTEADIRQRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEERVRKAVGLLEKPAVQFPDGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHGERTGGFYACNRYETA*********************RYTHYYERWAT****************TVHLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPDHEHAKRQFFEYLQGEAESGLERLHQCAEKELQIYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSD*********************************************HWYCDQCTYANVNSATACAMC****

MESEDE*****************************DSDDADVADYEFIDNDS*********RHQLNYTVLTEADIRQRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEERVRKAV************GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTEEAHRPVDCDTVAKWVL**SA*SENMNWILANSKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHGERTGGFYACNRYETAK*****************SLERYTHYYERWATNQSSRQKALADL*****************PESQLKFITEAWLQIVECRRVLKWTYAYGYYLPDHEHAKRQFFEYLQGEAESGLERLHQCAEKELQIYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLS**********************************************HWYCDQCTYANVNSATACAMCQH**

**********************SGGDDDAAPAYAFDSDDADVADYEFIDNDSDDSDDLVSNRHQLNYTVLTEADIRQRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEERVRKAVGLLEKPAVQFPDGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHGERTGGFYACNRYETAK**************AKNSLERYTHYYERWATNQSSRQKALADLQQMQTVHLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPDHEHAKRQFFEYLQGEAESGLERLHQCAEKELQIYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDTHATC*********************************IDDSSHWYCDQCTYANVNSATACAMCQHSR

*******************************************************D**VSNRHQLNYTVLTEADIRQRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEERVRKAVGLLEKPAVQFPDGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHGERTGGFYACNRYETAKQEG*YD*******MAKNSLERYTHYYERWATNQSSRQKALADLQQMQTVHLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPDHEHAKRQFFEYLQGEAESGLERLHQCAEKELQIYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGL**********************************************SHWYCDQCTYANVNSATACAMCQHS*

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		595	2.2.26 [Sep-21-2011]
Q8W468		567	Probable E3 ubiquitin-pro	yes	no	0.947	0.994	0.759	0.0
Q84RR0		562	Probable E3 ubiquitin-pro	no	no	0.941	0.996	0.729	0.0
Q8L829		552	Probable E3 ubiquitin-pro	no	no	0.857	0.923	0.7	0.0
P0C8K8		552	Putative E3 ubiquitin-pro	no	no	0.862	0.929	0.666	0.0
Q9SKC3		543	Probable E3 ubiquitin-pro	no	no	0.779	0.854	0.579	1e-170
Q9SKC2		542	Probable E3 ubiquitin-pro	no	no	0.830	0.911	0.543	1e-166
Q9SKC4		514	Probable E3 ubiquitin-pro	no	no	0.746	0.863	0.580	1e-164
Q84RQ9		496	Probable E3 ubiquitin-pro	no	no	0.759	0.911	0.405	5e-96
Q6T486		520	Probable E3 ubiquitin-pro	yes	no	0.811	0.928	0.344	2e-83
Q9P3U4		504	Uncharacterized RING fing	yes	no	0.719	0.849	0.326	8e-66

>sp\|Q8W468\|ARI8_ARATH Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana GN=ARI8 PE=2 SV=1	Back alignment and function desciption

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/578 (75%), Positives = 492/578 (85%), Gaps = 14/578 (2%)

Query: 18  EDDFYSGGDDDAAPAYAFDSDDADVADYEFIDNDSDDSDDLVSNRHQLNYTVLTEADIRQ 77
           +DDFYSG ++ +  A + D DDAD  +YEF+D+ +DDSDDL+  R Q NY+VL+EADI +
Sbjct: 4   DDDFYSGTENYSDYADS-DEDDAD-GEYEFVDDAADDSDDLIFRRRQQNYSVLSEADICK 61

Query: 78  RQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEERVRKAVGLLEKPAVQFP 137
            QE+DI+RISTVLSIS+ +++ILLR YNW VS+VHDEWFADEE+VR AVGLLEKP V FP
Sbjct: 62  LQEDDISRISTVLSISRNSSAILLRHYNWCVSRVHDEWFADEEKVRDAVGLLEKPVVDFP 121

Query: 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAA 197
              E+ CGICFE + SD+L AAACGHPFC SCW GYI+TAINDGPGCL LRCPDPSC AA
Sbjct: 122 TDGELDCGICFETFLSDKLHAAACGHPFCDSCWEGYITTAINDGPGCLTLRCPDPSCRAA 181

Query: 198 VGQDMIYLLSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTCRC 257
           VGQDMI LL+ D+DK KY  YF+RSYVEDNRKTKWCPAPGCDYAV+FVVGSGNYDV CRC
Sbjct: 182 VGQDMINLLAPDKDKQKYTSYFVRSYVEDNRKTKWCPAPGCDYAVNFVVGSGNYDVNCRC 241

Query: 258 SYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCMH 317
            YSFCWNC EEAHRPVDCDTV+KWVLKNSAESENMNWILANSKPCP+CKRPIEKNQGCMH
Sbjct: 242 CYSFCWNCAEEAHRPVDCDTVSKWVLKNSAESENMNWILANSKPCPKCKRPIEKNQGCMH 301

Query: 318 MTCTPPCKFEFCWLCLGQWSDHGERTGGFYACNRYETAKQEGVYDESEKRREMAKNSLER 377
           +TCTPPCKFEFCWLCLG W++HGE+TGGFYACNRYE AKQ+G+YDE+EKRREMAKNSLER
Sbjct: 302 ITCTPPCKFEFCWLCLGAWTEHGEKTGGFYACNRYEAAKQDGIYDETEKRREMAKNSLER 361

Query: 378 YTHYYERWATNQSSRQKALADLQQMQTVHLEKLSDVQCQPESQLKFITEAWLQIVECRRV 437
           YTHYYERWATNQSSRQKAL DL++MQT  +EKLSD+QCQPESQLKFI EAWLQIVECRRV
Sbjct: 362 YTHYYERWATNQSSRQKALLDLKKMQTDDIEKLSDIQCQPESQLKFIIEAWLQIVECRRV 421

Query: 438 LKWTYAYGYYLPDHEHAKRQFFEYLQGEAESGLERLHQCAEKELQIYLNADGPSKDFNEF 497
           LKWTYAYG+Y+PD EH KR FFEYLQGEAESGLERLHQCAEKEL  YL+A GPS+DFNEF
Sbjct: 422 LKWTYAYGFYIPDQEHGKRVFFEYLQGEAESGLERLHQCAEKELLPYLDAKGPSEDFNEF 481

Query: 498 RTKLAGLTSVTRNYFENLVRALENGLSDVDTHATCSRTGSSKSLGGTSRGRSGKNKGSTS 557
           RTKLAGLTSVT+NYFENLVRALENGLSDV++H    RT SSKSLGG ++G S K   S  
Sbjct: 482 RTKLAGLTSVTKNYFENLVRALENGLSDVNSHDAYDRTSSSKSLGGKTKGSSSKASSSD- 540

Query: 558 RSSGSNKNIDDSSHWYCDQCTYANVNSATACAMCQHSR 595
                      SSHW C+ CTY N  S T C MC+H R
Sbjct: 541 -----------SSHWPCEYCTYVNPRSTTICQMCEHGR 567

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q84RR0\|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1	Back alignment and function description

>sp\|Q8L829\|ARI5_ARATH Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana GN=ARI5 PE=2 SV=1	Back alignment and function description

>sp\|P0C8K8\|ARI6_ARATH Putative E3 ubiquitin-protein ligase ARI6 OS=Arabidopsis thaliana GN=ARI6 PE=5 SV=1	Back alignment and function description

>sp\|Q9SKC3\|ARI9_ARATH Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana GN=ARI9 PE=2 SV=1	Back alignment and function description

>sp\|Q9SKC2\|ARI11_ARATH Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana GN=ARI11 PE=2 SV=1	Back alignment and function description

>sp\|Q9SKC4\|ARI10_ARATH Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana GN=ARI10 PE=2 SV=1	Back alignment and function description

>sp\|Q84RQ9\|ARI12_ARATH Probable E3 ubiquitin-protein ligase ARI12 OS=Arabidopsis thaliana GN=ARI12 PE=2 SV=2	Back alignment and function description

>sp\|Q6T486\|RBRA_DICDI Probable E3 ubiquitin-protein ligase rbrA OS=Dictyostelium discoideum GN=rbrA PE=3 SV=1	Back alignment and function description

>sp\|Q9P3U4\|YKX2_SCHPO Uncharacterized RING finger protein C328.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC328.02 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		595
224109192		591	predicted protein [Populus trichocarpa]	0.991	0.998	0.857	0.0
224101249		591	predicted protein [Populus trichocarpa]	0.991	0.998	0.835	0.0
359495753		652	PREDICTED: probable E3 ubiquitin-protein	0.984	0.898	0.825	0.0
449442245		597	PREDICTED: probable E3 ubiquitin-protein	0.993	0.989	0.811	0.0
298205054		581	unnamed protein product [Vitis vinifera]	0.974	0.998	0.821	0.0
147843035		588	hypothetical protein VITISV_023021 [Viti	0.983	0.994	0.795	0.0
359478116		587	PREDICTED: probable E3 ubiquitin-protein	0.984	0.998	0.761	0.0
255547476		513	Protein ariadne-1, putative [Ricinus com	0.858	0.996	0.880	0.0
356538909		586	PREDICTED: probable E3 ubiquitin-protein	0.978	0.993	0.745	0.0
414586613		589	TPA: putative RING zinc finger domain su	0.973	0.983	0.761	0.0

>gi\|224109192\|ref\|XP_002315117.1\| predicted protein [Populus trichocarpa] gi\|222864157\|gb\|EEF01288.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1061 bits (2745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/596 (85%), Positives = 550/596 (92%), Gaps = 6/596 (1%)

Query: 1   MESEDEFDMQDANASAEEDDFYSGGDDDAAPAYAFDSDDADVADYEFIDNDSDDSDDLVS 60
           M+SEDEFDMQDA A + EDDFYSGG++D      FDSDDADVADYEFIDNDSDDSDDL+S
Sbjct: 1   MDSEDEFDMQDAAAESAEDDFYSGGEEDG-----FDSDDADVADYEFIDNDSDDSDDLIS 55

Query: 61  NRHQLNYTVLTEADIRQRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEE 120
           +RHQ NYTVL+E DIRQRQ++D+ RI+TVLSISKVAASILLR+YNWSVSKVHDEWFADEE
Sbjct: 56  HRHQQNYTVLSEEDIRQRQDDDVMRIATVLSISKVAASILLRYYNWSVSKVHDEWFADEE 115

Query: 121 RVRKAVGLLEKPAVQFPDGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAIND 180
           +VRKAVGLLE+P V FPDG EMTCGICFE YPSDRLLAAACGHPFC+SCW GYISTAIND
Sbjct: 116 KVRKAVGLLEEPVVPFPDGREMTCGICFETYPSDRLLAAACGHPFCNSCWAGYISTAIND 175

Query: 181 GPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDY 240
           GPGCLMLRCPDPSC AA+GQDMI LL+SDED  K++RYFIRSY+EDNRKTKWCPAPGCDY
Sbjct: 176 GPGCLMLRCPDPSCNAAIGQDMINLLTSDEDSEKHSRYFIRSYIEDNRKTKWCPAPGCDY 235

Query: 241 AVDFVVGSGNYDVTCRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSK 300
           AVDF+VGSG+YDVTCRC+YSFCWNCTEEAHRPVDC TVAKW+LKNSAESENMNWILANSK
Sbjct: 236 AVDFIVGSGSYDVTCRCAYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSK 295

Query: 301 PCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHGERTGGFYACNRYETAKQEGV 360
           PCP+CKRPIEKNQGCMH+TCTPPCKFEFC LCLG WSDHGERTGGFYACNRYETAKQEGV
Sbjct: 296 PCPKCKRPIEKNQGCMHITCTPPCKFEFCRLCLGAWSDHGERTGGFYACNRYETAKQEGV 355

Query: 361 YDESEKRREMAKNSLERYTHYYERWATNQSSRQKALADLQQMQTVHLEKLSDVQCQPESQ 420
           YDESEKRREMAKNSLERYTHYYERWATNQSSRQKALADLQQMQ VHLEKLSD+QCQPESQ
Sbjct: 356 YDESEKRREMAKNSLERYTHYYERWATNQSSRQKALADLQQMQNVHLEKLSDIQCQPESQ 415

Query: 421 LKFITEAWLQIVECRRVLKWTYAYGYYLPDHEHAKRQFFEYLQGEAESGLERLHQCAEKE 480
           LKFI EAWLQIVECRRVLKWTYAYGYYLP+HEHAKR FFEY+QGEAESGLERLHQCAEKE
Sbjct: 416 LKFIIEAWLQIVECRRVLKWTYAYGYYLPEHEHAKRMFFEYVQGEAESGLERLHQCAEKE 475

Query: 481 LQIYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDTHATCSRTG-SSK 539
           LQIYLNA+GPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVD+H TCSRT  S  
Sbjct: 476 LQIYLNAEGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSRTASSKS 535

Query: 540 SLGGTSRGRSGKNKGSTSRSSGSNKNIDDSSHWYCDQCTYANVNSATACAMCQHSR 595
             GG+SR R+G+ KGSTSRSSG ++NIDD  HW C+ CT+AN+  AT CAMCQ  R
Sbjct: 536 LGGGSSRARAGRGKGSTSRSSGPSRNIDDPGHWSCEHCTFANIKPATICAMCQQRR 591

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224101249\|ref\|XP_002312201.1\| predicted protein [Populus trichocarpa] gi\|222852021\|gb\|EEE89568.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359495753\|ref\|XP_002268068.2\| PREDICTED: probable E3 ubiquitin-protein ligase ARI8-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449442245\|ref\|XP_004138892.1\| PREDICTED: probable E3 ubiquitin-protein ligase ARI8-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|298205054\|emb\|CBI38350.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147843035\|emb\|CAN83309.1\| hypothetical protein VITISV_023021 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359478116\|ref\|XP_003632072.1\| PREDICTED: probable E3 ubiquitin-protein ligase ARI7-like [Vitis vinifera] gi\|147800085\|emb\|CAN64272.1\| hypothetical protein VITISV_008933 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255547476\|ref\|XP_002514795.1\| Protein ariadne-1, putative [Ricinus communis] gi\|223545846\|gb\|EEF47349.1\| Protein ariadne-1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356538909\|ref\|XP_003537943.1\| PREDICTED: probable E3 ubiquitin-protein ligase ARI7-like [Glycine max]	Back alignment and taxonomy information

>gi\|414586613\|tpg\|DAA37184.1\| TPA: putative RING zinc finger domain superfamily protein [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		595
TAIR\|locus:2206315		567	ARI8 "ARIADNE 8" [Arabidopsis	0.947	0.994	0.756	8.1e-250
TAIR\|locus:2065954		562	ARI7 "ARIADNE 7" [Arabidopsis	0.939	0.994	0.728	5.2e-239
TAIR\|locus:2045188		543	ARI9 "ARIADNE 9" [Arabidopsis	0.838	0.918	0.544	7.5e-160
TAIR\|locus:2045223		514	ARI10 "ARIADNE 10" [Arabidopsi	0.808	0.935	0.504	8.6e-143
DICTYBASE\|DDB_G0286961		520	rbrA "IBR zinc finger-containi	0.828	0.948	0.342	1.2e-83
POMBASE\|SPAC328.02		504	SPAC328.02 "ubiquitin-protein	0.737	0.871	0.324	7.6e-72
ASPGD\|ASPL0000014787		511	AN3689 [Emericella nidulans (t	0.759	0.884	0.344	4.8e-71
UNIPROTKB\|G4NDZ4		522	MGG_00859 "Ariadne-1" [Magnapo	0.766	0.873	0.327	1.1e-69
MGI\|MGI:1344363		555	Arih1 "ariadne ubiquitin-conju	0.668	0.717	0.332	3.5e-67
DICTYBASE\|DDB_G0289043		1818	DDB_G0289043 [Dictyostelium di	0.618	0.202	0.328	5.6e-67

TAIR\|locus:2206315 ARI8 "ARIADNE 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2406 (852.0 bits), Expect = 8.1e-250, P = 8.1e-250
 Identities = 437/578 (75%), Positives = 489/578 (84%)

Query:    18 EDDFYSGGDDDAAPAYAFDSDDADVADYEFIXXXXXXXXXLVSNRHQLNYTVLTEADIRQ 77
             +DDFYSG ++ +  A + D DDAD  +YEF+         L+  R Q NY+VL+EADI +
Sbjct:     4 DDDFYSGTENYSDYADS-DEDDAD-GEYEFVDDAADDSDDLIFRRRQQNYSVLSEADICK 61

Query:    78 RQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEERVRKAVGLLEKPAVQFP 137
              QE+DI+RISTVLSIS+ +++ILLR YNW VS+VHDEWFADEE+VR AVGLLEKP V FP
Sbjct:    62 LQEDDISRISTVLSISRNSSAILLRHYNWCVSRVHDEWFADEEKVRDAVGLLEKPVVDFP 121

Query:   138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAA 197
                E+ CGICFE + SD+L AAACGHPFC SCW GYI+TAINDGPGCL LRCPDPSC AA
Sbjct:   122 TDGELDCGICFETFLSDKLHAAACGHPFCDSCWEGYITTAINDGPGCLTLRCPDPSCRAA 181

Query:   198 VGQDMIYLLSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTCRC 257
             VGQDMI LL+ D+DK KY  YF+RSYVEDNRKTKWCPAPGCDYAV+FVVGSGNYDV CRC
Sbjct:   182 VGQDMINLLAPDKDKQKYTSYFVRSYVEDNRKTKWCPAPGCDYAVNFVVGSGNYDVNCRC 241

Query:   258 SYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCMH 317
              YSFCWNC EEAHRPVDCDTV+KWVLKNSAESENMNWILANSKPCP+CKRPIEKNQGCMH
Sbjct:   242 CYSFCWNCAEEAHRPVDCDTVSKWVLKNSAESENMNWILANSKPCPKCKRPIEKNQGCMH 301

Query:   318 MTCTPPCKFEFCWLCLGQWSDHGERTGGFYACNRYETAKQEGVYDESEKRREMAKNSLER 377
             +TCTPPCKFEFCWLCLG W++HGE+TGGFYACNRYE AKQ+G+YDE+EKRREMAKNSLER
Sbjct:   302 ITCTPPCKFEFCWLCLGAWTEHGEKTGGFYACNRYEAAKQDGIYDETEKRREMAKNSLER 361

Query:   378 YTHYYERWATNQSSRQKALADLQQMQTVHLEKLSDVQCQPESQLKFITEAWLQIVECRRV 437
             YTHYYERWATNQSSRQKAL DL++MQT  +EKLSD+QCQPESQLKFI EAWLQIVECRRV
Sbjct:   362 YTHYYERWATNQSSRQKALLDLKKMQTDDIEKLSDIQCQPESQLKFIIEAWLQIVECRRV 421

Query:   438 LKWTYAYGYYLPDHEHAKRQFFEYLQGEAESGLERLHQCAEKELQIYLNADGPSKDFNEF 497
             LKWTYAYG+Y+PD EH KR FFEYLQGEAESGLERLHQCAEKEL  YL+A GPS+DFNEF
Sbjct:   422 LKWTYAYGFYIPDQEHGKRVFFEYLQGEAESGLERLHQCAEKELLPYLDAKGPSEDFNEF 481

Query:   498 RTKLAGLTSVTRNYFENLVRALENGLSDVDTHATCSRTGSSKSLGGTSRGRSGKNKGSTS 557
             RTKLAGLTSVT+NYFENLVRALENGLSDV++H    RT SSKSLGG       K KGS+S
Sbjct:   482 RTKLAGLTSVTKNYFENLVRALENGLSDVNSHDAYDRTSSSKSLGG-------KTKGSSS 534

Query:   558 RSSGSNKNIDDSSHWYCDQCTYANVNSATACAMCQHSR 595
             ++S S     DSSHW C+ CTY N  S T C MC+H R
Sbjct:   535 KASSS-----DSSHWPCEYCTYVNPRSTTICQMCEHGR 567

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR\|locus:2065954 ARI7 "ARIADNE 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2045188 ARI9 "ARIADNE 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2045223 ARI10 "ARIADNE 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0286961 rbrA "IBR zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

POMBASE\|SPAC328.02 SPAC328.02 "ubiquitin-protein ligase involved in sporulation" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000014787 AN3689 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|G4NDZ4 MGG_00859 "Ariadne-1" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

MGI\|MGI:1344363 Arih1 "ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0289043 DDB_G0289043 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84RR0	ARI7_ARATH	6, ., 3, ., 2, ., -	0.7298	0.9411	0.9964	no	no
Q6T486	RBRA_DICDI	6, ., 3, ., 2, ., -	0.3442	0.8117	0.9288	yes	no
Q8W468	ARI8_ARATH	6, ., 3, ., 2, ., -	0.7595	0.9478	0.9947	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		595
smart00647		64	smart00647, IBR, In Between Ring fingers	2e-19
pfam01485		63	pfam01485, IBR, IBR domain	4e-13
pfam01485		63	pfam01485, IBR, IBR domain	2e-05

>gnl\|CDD\|214763 smart00647, IBR, In Between Ring fingers	Back alignment and domain information

 Score = 82.1 bits (203), Expect = 2e-19
 Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 214 KYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEEAHRP 272
           KY R  + SYVE N   KWCPAP C  A+      G   VTC +C +SFC+ C    H P
Sbjct: 2   KYERLLLESYVESNPDLKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWHSP 61

Query: 273 VDC 275
           V C
Sbjct: 62  VSC 64

the domains occurs between pairs og RING fingers. Length = 64

>gnl\|CDD\|216524 pfam01485, IBR, IBR domain	Back alignment and domain information

>gnl\|CDD\|216524 pfam01485, IBR, IBR domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		595
KOG1815		444	consensus Predicted E3 ubiquitin ligase [Posttrans	100.0
KOG1812		384	consensus Predicted E3 ubiquitin ligase [Posttrans	100.0
KOG1814		445	consensus Predicted E3 ubiquitin ligase [Posttrans	99.97
KOG0006		446	consensus E3 ubiquitin-protein ligase (Parkin prot	99.89
smart00647		64	IBR In Between Ring fingers. the domains occurs be	99.21
PF01485		64	IBR: IBR domain; InterPro: IPR002867 Zinc finger (	99.09
PF15227		42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.74
PF13923		39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.27
KOG0320		187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.25
PF00097		41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.21
PF13639		44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.19
PLN03208		193	E3 ubiquitin-protein ligase RMA2; Provisional	98.17
PF13445		43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.1
KOG4367		699	consensus Predicted Zn-finger protein [Function un	97.94
PF13920		50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	97.91
PF01485		64	IBR: IBR domain; InterPro: IPR002867 Zinc finger (	97.88
KOG2177		386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.87
smart00647		64	IBR In Between Ring fingers. the domains occurs be	97.85
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	97.8
PF14634		44	zf-RING_5: zinc-RING finger domain	97.8
smart00504		63	Ubox Modified RING finger domain. Modified RING fi	97.76
KOG0823		230	consensus Predicted E3 ubiquitin ligase [Posttrans	97.76
TIGR00599		397	rad18 DNA repair protein rad18. This family is bas	97.75
KOG0317		293	consensus Predicted E3 ubiquitin ligase, integral	97.72
KOG0287		442	consensus Postreplication repair protein RAD18 [Re	97.67
KOG2164		513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.57
smart00184		39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.56
PHA02926		242	zinc finger-like protein; Provisional	97.56
PHA02929		238	N1R/p28-like protein; Provisional	97.54
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.4
PF04564		73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.04
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	97.01
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	96.87
COG5574		271	PEX10 RING-finger-containing E3 ubiquitin ligase [	96.63
PF14835		65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.53
PF11789		57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.43
KOG4628		348	consensus Predicted E3 ubiquitin ligase [Posttrans	96.33
PF12678		73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	96.2
COG5432		391	RAD18 RING-finger-containing E3 ubiquitin ligase [	96.12
KOG1002		791	consensus Nucleotide excision repair protein RAD16	96.06
COG5540		374	RING-finger-containing ubiquitin ligase [Posttrans	96.04
PF14555		43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	95.86
COG5243		491	HRD1 HRD ubiquitin ligase complex, ER membrane com	95.71
PF00641		30	zf-RanBP: Zn-finger in Ran binding protein and oth	95.59
smart00547		26	ZnF_RBZ Zinc finger domain. Zinc finger domain in	95.37
KOG0824		324	consensus Predicted E3 ubiquitin ligase [Posttrans	94.63
PF14570		48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.59
KOG2879		298	consensus Predicted E3 ubiquitin ligase [Posttrans	94.52
KOG1814		445	consensus Predicted E3 ubiquitin ligase [Posttrans	94.49
PF11793		70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	94.48
KOG4159		398	consensus Predicted E3 ubiquitin ligase [Posttrans	94.18
COG5152		259	Uncharacterized conserved protein, contains RING a	94.05
KOG0311		381	consensus Predicted E3 ubiquitin ligase [Posttrans	94.03
KOG2660		331	consensus Locus-specific chromosome binding protei	93.59
KOG1039		344	consensus Predicted E3 ubiquitin ligase [Posttrans	93.27
KOG0006		446	consensus E3 ubiquitin-protein ligase (Parkin prot	92.54
PF12861		85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	92.24
PRK00420		112	hypothetical protein; Validated	92.09
KOG0802		543	consensus E3 ubiquitin ligase [Posttranslational m	91.97
KOG1645		463	consensus RING-finger-containing E3 ubiquitin liga	91.95
KOG1812		384	consensus Predicted E3 ubiquitin ligase [Posttrans	91.74
KOG1734		328	consensus Predicted RING-containing E3 ubiquitin l	91.2
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	91.16
KOG2817		394	consensus Predicted E3 ubiquitin ligase [Posttrans	89.8
PF10571		26	UPF0547: Uncharacterised protein family UPF0547; I	89.79
KOG4692		489	consensus Predicted E3 ubiquitin ligase [Posttrans	89.11
KOG4265		349	consensus Predicted E3 ubiquitin ligase [Posttrans	88.78
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	87.68
KOG0317		293	consensus Predicted E3 ubiquitin ligase, integral	87.01
smart00744		49	RINGv The RING-variant domain is a C4HC3 zinc-fing	86.77
KOG0826		357	consensus Predicted E3 ubiquitin ligase involved i	86.66
PF13248		26	zf-ribbon_3: zinc-ribbon domain	85.51
PF13240		23	zinc_ribbon_2: zinc-ribbon domain	85.46
KOG1813		313	consensus Predicted E3 ubiquitin ligase [Posttrans	84.93
PF05883		134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	84.85
KOG1001		674	consensus Helicase-like transcription factor HLTF/	84.78
KOG0827		465	consensus Predicted E3 ubiquitin ligase [Posttrans	84.56
KOG1815		444	consensus Predicted E3 ubiquitin ligase [Posttrans	84.45
KOG1428		3738	consensus Inhibitor of type V adenylyl cyclases/Ne	83.86
KOG4739		233	consensus Uncharacterized protein involved in syna	83.29
KOG0297		391	consensus TNF receptor-associated factor [Signal t	82.79
KOG1785		563	consensus Tyrosine kinase negative regulator CBL [	82.65
KOG4185		296	consensus Predicted E3 ubiquitin ligase [Posttrans	81.97
smart00661		52	RPOL9 RNA polymerase subunit 9.	81.81
PF10446		458	DUF2457: Protein of unknown function (DUF2457); In	81.64
KOG0828		636	consensus Predicted E3 ubiquitin ligase [Posttrans	81.62
PF15227		42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	81.13
KOG1952		950	consensus Transcription factor NF-X1, contains NFX	80.99

>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=1.8e-71  Score=604.12  Aligned_cols=437  Identities=49%  Similarity=0.913  Sum_probs=399.7

Q ss_pred             EeCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhhcHHHHHHHhCCCCCCCCCCCCCCcccccccc
Q 007642           69 VLTEADIRQRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEERVRKAVGLLEKPAVQFPDGEEMTCGICF  148 (595)
Q Consensus        69 vl~~~~i~~~~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~C~IC~  148 (595)
                      ||+++++...|.++|..|+++|++++.+|++||.+|.|+.+++++.|+.+++.++..+|+...+    .......|+||+
T Consensus         2 vl~~~~~~~~~~~~i~~~~~~ls~~~~~~~~ll~~~~W~~~kl~~~~~~~~~~~~~~~g~~~~~----~~~~~~~c~ic~   77 (444)
T KOG1815|consen    2 VLTPDDIAALMREDIIEVSDILSLSHAVARILLAHFCWNVEKLLEEWVEDEETGCFFVGLLLWP----KKKGDVQCGICV   77 (444)
T ss_pred             CCchHhhhHHhHhhHHHHHHhhcCCHHHHHHHHHhcCcchHHHHHHHHhcCcchhhhccccccC----CCCccccCCccc
Confidence            6889999999999999999999999999999999999999999999999999999999986653    345578899999


Q ss_pred             ccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhHHhhhcCh-HHHHHHHHHHHHHhhhhC
Q 007642          149 ENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSD-EDKVKYNRYFIRSYVEDN  227 (595)
Q Consensus       149 e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~-e~~eky~~~~~~~~v~~~  227 (595)
                      +.++. .+..+.|||.||..||..|+..+|..+.... |+||.+.|.+.+..+.|..++++ +..++|.++++++|++.+
T Consensus        78 ~~~~~-~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~-i~cp~~~C~a~v~~~~i~~~~s~~~~~~ky~~~i~~syve~~  155 (444)
T KOG1815|consen   78 ESYDG-EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAK-IKCPAHGCPALVGEDTVEKLVSDKEDKEKYQRYILRSYVEDN  155 (444)
T ss_pred             CCCcc-hhhhcCCCcHHHHHHHHHHhhheeecccccc-ccCCCCCccccCCCceeeeecCCHHHHHHHHHHHHHHHHhcC
Confidence            98865 6888999999999999999999999886433 89999999999999999999998 599999999999999999


Q ss_pred             CCcccCCCCCCCCeeeeecCCCCceeeecCCCcccccCCcccCCCCCchhHHHHHHhhhHhHHhHHHHHhcCccCCCCCc
Q 007642          228 RKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKR  307 (595)
Q Consensus       228 ~~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~e~~~wi~~ntK~CPkC~~  307 (595)
                      ..++|||+|+|++++.+. ......|.|.|++.|||.|+.+||.|.+|.....|+.+..+++++.+||.+|+++||+|..
T Consensus       156 ~~lkwCP~~~C~~av~~~-~~~~~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~  234 (444)
T KOG1815|consen  156 VPLKWCPAPGCGLAVKFG-SLESVEVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKV  234 (444)
T ss_pred             CccccCCCCCCCceeecc-CCCccceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCccc
Confidence            999999999999999875 4456789999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecCCCCcccccCC--CcceeeecccccccCCCCCCCCcccCCchhhhhhcCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 007642          308 PIEKNQGCMHMTCTPP--CKFEFCWLCLGQWSDHGERTGGFYACNRYETAKQEGVYDESEKRREMAKNSLERYTHYYERW  385 (595)
Q Consensus       308 ~IEK~~GCnhmtC~~~--C~~~FCw~C~~~~~~H~~~~g~~y~C~~~~~~~~~~~~~~~e~~~~~~~~~l~ry~~y~~r~  385 (595)
                      +|||++|||||+|. .  |++.|||+|++.|.+|+..+  +|.|++|...+...       .+++++..|.||+|||.||
T Consensus       235 ~iek~~gc~~~~~~-~~~c~~~FCw~Cl~~~~~h~~~~--~~~c~~~~~~~~~~-------~~~~a~~~l~r~~~~~~~~  304 (444)
T KOG1815|consen  235 PIEKDGGCNHMTCK-SASCKHEFCWVCLASLSDHGSST--GYSCNRYVDGKSKS-------ARSKARRSLKRYTHYYNRW  304 (444)
T ss_pred             chhccCCccccccc-cCCcCCeeceeeecccccccccc--eeeeeeeechhhhh-------HHHHHHHHHHHHHHHHhhH
Confidence            99999999999998 5  99999999999999999754  89999998654311       4678899999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcccCccchhhHHHHHHHHHH
Q 007642          386 ATNQSSRQKALADLQQMQTVHLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPDHEHAKRQFFEYLQGE  465 (595)
Q Consensus       386 ~~h~~s~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~a~~~l~~~r~~L~~sy~~~yy~~~~~~~~~~~fe~~Q~~  465 (595)
                      ++|+.+++++...+..+...+..++......++.+++|+.+++.+|.++|++|+|+|+|+||+.  ...++.+||++|.+
T Consensus       305 ~~~q~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~r~~l~~s~~~~~~~~--~~~~~~~fe~~q~~  382 (444)
T KOG1815|consen  305 MEHQVSLKLEGKLLSKVEEVKKPKLSDSLSLSWIDVQFLRDAGDVLVECRRTLKWTYAYAYYLS--ENNKRNLFEDNQTD  382 (444)
T ss_pred             HhhhhhhhhhhhhHHHHHHHhhhhhhcccCeeeeeeeeechhHHHHHhhhhhhhhhhhhhhhhc--ccchhhhhHHHHHH
Confidence            9999999999888888877888888887777889999999999999999999999999999997  44567899999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Q 007642          466 AESGLERLHQCAEKELQIYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDTH  529 (595)
Q Consensus       466 le~~~E~L~~~le~e~~~~~~~~~~~~~~~~~~~~l~~lt~~~~~~~~~l~~~le~~l~~~~~~  529 (595)
                      |+..+|.|+..++.++.     ..+...+..++.+|.++|.+++++|+++++++++||.++...
T Consensus       383 ~~~~~e~ls~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  441 (444)
T KOG1815|consen  383 LESAVEPLSSCLEESLK-----DISSETLAEFKQKLTDLTSYVRNRFENLLKHLEEGLEDVGSE  441 (444)
T ss_pred             HhhhhhhhHHHhccccc-----cCCcccHHHHHhhccccchhhhhHHHHHHHHHHhcccccccc
Confidence            99999999999998776     456688999999999999999999999999999999998543

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00647 IBR In Between Ring fingers	Back alignment and domain information

>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A	Back alignment and domain information

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A	Back alignment and domain information

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A	Back alignment and domain information

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional	Back alignment and domain information

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A	Back alignment and domain information

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]	Back alignment and domain information

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A	Back alignment and domain information

>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00647 IBR In Between Ring fingers	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>PF14634 zf-RING_5: zinc-RING finger domain	Back alignment and domain information

>smart00504 Ubox Modified RING finger domain	Back alignment and domain information

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00599 rad18 DNA repair protein rad18	Back alignment and domain information

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]	Back alignment and domain information

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00184 RING Ring finger	Back alignment and domain information

>PHA02926 zinc finger-like protein; Provisional	Back alignment and domain information

>PHA02929 N1R/p28-like protein; Provisional	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B	Back alignment and domain information

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C	Back alignment and domain information

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A	Back alignment and domain information

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>smart00547 ZnF_RBZ Zinc finger domain	Back alignment and domain information

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B	Back alignment and domain information

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A	Back alignment and domain information

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]	Back alignment and domain information

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]	Back alignment and domain information

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger	Back alignment and domain information

>PRK00420 hypothetical protein; Validated	Back alignment and domain information

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines	Back alignment and domain information

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins	Back alignment and domain information

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13248 zf-ribbon_3: zinc-ribbon domain	Back alignment and domain information

>PF13240 zinc_ribbon_2: zinc-ribbon domain	Back alignment and domain information

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]	Back alignment and domain information

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]	Back alignment and domain information

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00661 RPOL9 RNA polymerase subunit 9	Back alignment and domain information

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins	Back alignment and domain information

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A	Back alignment and domain information

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		595
1wd2_A		60	Solution Structure Of The C-Terminal Ring From A Ri		2e-11

>pdb|1WD2|A Chain A, Solution Structure Of The C-Terminal Ring From A Ring-Ibr- Ring (Triad) Motif Length = 60

Back alignment and structure

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 294 WILANSKPCPRCKRPIEKNQGCMHMTC-TPPCKFEFCWLCLGQWSDHGERTGGFYACNRY 352
           WI AN+K CP+C   IEK+ GC HM C    CK EFCW+CLG W  HG     +Y CNRY
Sbjct: 1   WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS---AWYNCNRY 57

PyMOL of 1wd2

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		595
1wd2_A		60	Ariadne-1 protein homolog; ring, IBR, triad, zinc	2e-26
1wim_A		94	KIAA0161 protein; ring finger domain, UBCM4-intera	2e-17
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
2ct7_A		86	Ring finger protein 31; IBR, structural genomics,	1e-06
3gj7_B		98	Nuclear pore complex protein NUP153; G protein, GD	1e-04
2xeu_A		64	Ring finger protein 4; transcription, zinc-finger,	2e-04
2djb_A		72	Polycomb group ring finger protein 6; PCGF6, ring	6e-04
3gj8_B		92	Nuclear pore complex protein NUP153; G protein, GD	7e-04

>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 60	Back alignment and structure

 Score =  101 bits (253), Expect = 2e-26
 Identities = 33/61 (54%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 294 WILANSKPCPRCKRPIEKNQGCMHMTCTPP-CKFEFCWLCLGQWSDHGERTGGFYACNRY 352
           WI AN+K CP+C   IEK+ GC HM C    CK EFCW+CLG W  HG     +Y CNRY
Sbjct: 1   WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS---AWYNCNRY 57

Query: 353 E 353
            
Sbjct: 58  N 58

PyMOL of 1wd2

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 55.2 bits (132), Expect = 5e-08
 Identities = 92/634 (14%), Positives = 178/634 (28%), Gaps = 205/634 (32%)

Query: 5   DEFDMQDAN-------ASAEEDDFYSGGDDDAAPAYAFDSDDADVADYEFIDNDSDDSDD 57
           D FD +D         +  E D      D  +     F +          +    +    
Sbjct: 31  DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT---------LLSKQEEMVQK 81

Query: 58  LVSNRHQLNYTVLTEADIRQRQEEDITRISTVLSISKVAASILLRFYN-------WSVSK 110
            V    ++NY  L       + E+    + T + I +       R YN       ++VS+
Sbjct: 82  FVEEVLRINYKFLMS---PIKTEQRQPSMMTRMYIEQRD-----RLYNDNQVFAKYNVSR 133

Query: 111 VHDEWFADEERVRKAVGLLE-KPA----VQFPDGEEMT-CG---ICFENYPSDRLLAAAC 161
           +         ++R+A  LLE +PA    +    G  +   G   +  +   S ++     
Sbjct: 134 LQPYL-----KLRQA--LLELRPAKNVLID---G--VLGSGKTWVALDVCLSYKVQCKMD 181

Query: 162 GHPFCSSCWTGYISTAINDGPGCLM------LRCPDPSCGAAVGQDMIYLLSSDEDKVKY 215
              F    W   ++    + P  ++      L   DP+  +         L     + + 
Sbjct: 182 FKIF----W---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 216 NRYFI-RSYVE-----DNRKTKWCPAPGCDYAVD-FVVGSGNYDVTCR-------CSYSF 261
            R    + Y        N +             + F       +++C+          + 
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKA--------WNAF-------NLSCKILLTTRFKQVTD 279

Query: 262 CWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCMHMTCT 321
             +     H  +D        L    E ++   +L     C     P E           
Sbjct: 280 FLSAATTTHISLD---HHSMTL-TPDEVKS---LLLKYLDCRPQDLPREVLTT------- 325

Query: 322 PPCKFEFCWLCLGQWSDHGERTGGFYACNRYETAKQEGVYDESEKRREMAKNSLE--RYT 379
            P +       +    D             ++  K     D+     E + N LE   Y 
Sbjct: 326 NPRRLSIIAESI---RDG---------LATWDNWKHVN-CDKLTTIIESSLNVLEPAEYR 372

Query: 380 HYYER------------------WATNQSSRQKALADLQQMQTVHLEKLSDVQCQPESQL 421
             ++R                  W      +     D+  +    L K S V+ QP+   
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIW--FDVIKS----DVMVV-VNKLHKYSLVEKQPKEST 425

Query: 422 KFI------------TEAWL--QIVECRRVLKWTYAYGYYLPDHEHAKRQFFEYLQGEAE 467
             I             E  L   IV+   + K T+     +P +    + F+ ++     
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYL--DQYFYSHI----- 477

Query: 468 SG--LERLHQCAEKEL--QIYLNADGPSKDFNEFRTKL----------AGLTSVT---RN 510
            G  L+ +       L   ++L       DF     K+            + +     + 
Sbjct: 478 -GHHLKNIEHPERMTLFRMVFL-------DFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 511 Y----------FENLVRALENGLSDVDTHATCSR 534
           Y          +E LV A+ + L  ++ +  CS+
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563

PyMOL of 1vt4

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4 Length = 86	Back alignment and structure

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Length = 98	Back alignment and structure

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64	Back alignment and structure

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72	Back alignment and structure

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Length = 92	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		595
1wd2_A		60	Ariadne-1 protein homolog; ring, IBR, triad, zinc	99.8
1wim_A		94	KIAA0161 protein; ring finger domain, UBCM4-intera	99.58
2ct7_A		86	Ring finger protein 31; IBR, structural genomics,	99.22
4ap4_A		133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.14
2jmo_A		80	Parkin; IBR, E3 ligase, zinc binding domain, RBR;	99.03
3hcs_A		170	TNF receptor-associated factor 6; cross-brace, bet	98.71
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	98.58
1rmd_A		116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.56
2egp_A		79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.56
2ecw_A		85	Tripartite motif-containing protein 30; metal bind	98.56
2yu4_A		94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.55
3ztg_A		92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.55
2ecv_A		85	Tripartite motif-containing protein 5; metal bindi	98.55
3hct_A		118	TNF receptor-associated factor 6; cross-brace, bet	98.54
1t1h_A		78	Gspef-atpub14, armadillo repeat containing protein	98.53
2ct2_A		88	Tripartite motif protein 32; zinc-finger protein H	98.52
2ysl_A		73	Tripartite motif-containing protein 31; ring-type	98.5
2d8t_A		71	Dactylidin, ring finger protein 146; RNF146, ring	98.5
1jm7_A		112	BRCA1, breast cancer type 1 susceptibility protein	98.47
2ysj_A		63	Tripartite motif-containing protein 31; ring-type	98.46
3lrq_A		100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.46
3knv_A		141	TNF receptor-associated factor 2; cross-brace, alt	98.46
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	98.45
2djb_A		72	Polycomb group ring finger protein 6; PCGF6, ring	98.43
3l11_A		115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.43
3fl2_A		124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.42
2y43_A		99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.42
2csy_A		81	Zinc finger protein 183-like 1; ring finger protei	98.41
2ecj_A		58	Tripartite motif-containing protein 39; TRIM39, ri	98.4
2kr4_A		85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.39
2yur_A		74	Retinoblastoma-binding protein 6; P53-associated c	98.38
3ng2_A		71	RNF4, snurf, ring finger protein 4; ring domain, E	98.36
4ayc_A		138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.35
2xeu_A		64	Ring finger protein 4; transcription, zinc-finger,	98.33
2kre_A		100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.32
2ea6_A		69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.32
1g25_A		65	CDK-activating kinase assembly factor MAT1; ring f	98.31
2c2l_A		281	CHIP, carboxy terminus of HSP70-interacting protei	98.3
2ecm_A		55	Ring finger and CHY zinc finger domain- containing	98.29
1z6u_A		150	NP95-like ring finger protein isoform B; structura	98.28
1wgm_A		98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.28
2ckl_A		108	Polycomb group ring finger protein 4; BMI1, RING1B	98.27
2kiz_A		69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.25
1jm7_B		117	BARD1, BRCA1-associated ring domain protein 1; rin	98.18
2ect_A		78	Ring finger protein 126; metal binding protein, st	98.16
3htk_C		267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.14
2l0b_A		91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.13
1bor_A		56	Transcription factor PML; proto-oncogene, nuclear	98.11
1iym_A		55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.09
2ep4_A		74	Ring finger protein 24; zinc binding, ubiquitin, E	98.06
1chc_A		68	Equine herpes virus-1 ring domain; viral protein;	98.06
1x4j_A		75	Ring finger protein 38; structural genomics, NPPSF	98.01
2f42_A		179	STIP1 homology and U-box containing protein 1; cha	97.99
1v87_A		114	Deltex protein 2; ring-H2 domain, zinc-binding dom	97.97
2ecn_A		70	Ring finger protein 141; RNF141, ring domain, zinc	97.97
2ckl_B		165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	97.92
4ic3_A		74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	97.76
2ecg_A		75	Baculoviral IAP repeat-containing protein 4; BIRC4	97.68
2ecl_A		81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.67
1nj3_A		31	NPL4; NZF domain, rubredoxin knuckle, beta-ribbon,	97.65
4ap4_A		133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.59
2vje_A		64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	97.55
3a9j_C		34	Mitogen-activated protein kinase kinase kinase 7-	97.45
2vje_B		63	MDM4 protein; proto-oncogene, phosphorylation, alt	97.44
2crc_A		52	Ubiquitin conjugating enzyme 7 interacting protein	97.42
2d9g_A		53	YY1-associated factor 2; ZF-ranbp domain, structur	97.41
2yho_A		79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	97.41
2y1n_A		389	E3 ubiquitin-protein ligase; ligase-transferase co	97.4
2ea5_A		68	Cell growth regulator with ring finger domain prot	97.39
3dpl_R		106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.3
2ct7_A		86	Ring finger protein 31; IBR, structural genomics,	97.19
2d8s_A		80	Cellular modulator of immune recognition; C-MIR, m	97.19
3t6p_A		345	Baculoviral IAP repeat-containing protein 2; ring,	96.83
2jmo_A		80	Parkin; IBR, E3 ligase, zinc binding domain, RBR;	96.62
4a0k_B		117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	96.53
2bay_A		61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	96.46
3gj3_B		33	Nuclear pore complex protein NUP153; G protein, GD	96.14
3b08_B		64	Ranbp-type and C3HC4-type zinc finger-containing;	95.89
2ct0_A		74	Non-SMC element 1 homolog; ring domain, structural	95.54
3k1l_B		381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	94.43
1v92_A		46	NSFL1 cofactor P47; 3-helix bundle, recombination;	93.99
3gj5_B		34	Nuclear pore complex protein NUP153; G protein, GD	93.83
1wd2_A		60	Ariadne-1 protein homolog; ring, IBR, triad, zinc	93.0
2ebq_A		47	Nuclear pore complex protein NUP153; ZF-ranbp doma	92.98
3vk6_A		101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	92.74
2dal_A		62	Protein KIAA0794; FAS associted factor 1, UBA-like	92.53
2jun_A		101	Midline-1; B-BOX, TRIM, ring finger, alternative s	92.47
2cs3_A		93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	91.46
1vyx_A		60	ORF K3, K3RING; zinc-binding protein, ring domain,	90.61
2jun_A		101	Midline-1; B-BOX, TRIM, ring finger, alternative s	90.47
2ebr_A		47	Nuclear pore complex protein NUP153; ZF-ranbp doma	88.95
2dam_A		67	ETEA protein; KIAA0887, UBA-like domain, structura	88.3
2dzl_A		66	Protein FAM100B; UBA-like domain, structural genom	87.16
3e21_A		45	HFAF1, FAS-associated factor 1; UBA, alternative s	86.69
3gj7_B		98	Nuclear pore complex protein NUP153; G protein, GD	85.76
1wj7_A		104	Hypothetical protein (RSGI RUH-015); UBA domain, u	85.29
3gj7_B		98	Nuclear pore complex protein NUP153; G protein, GD	84.56
1g25_A		65	CDK-activating kinase assembly factor MAT1; ring f	82.91
3lrq_A		100	E3 ubiquitin-protein ligase TRIM37; structural gen	82.23
2di0_A		71	Activating signal cointegrator 1 complex subunit 2	81.16
2ebv_A		57	Nuclear pore complex protein NUP153; ZF-ranbp doma	80.74
3nw0_A		238	Non-structural maintenance of chromosomes element	80.54
2jrp_A		81	Putative cytoplasmic protein; two-zinc binding pro	80.04

>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

Probab=99.80  E-value=4.1e-21  Score=149.08  Aligned_cols=57  Identities=58%  Similarity=1.443  Sum_probs=53.1

Q ss_pred             HHHhcCccCCCCCcceeecCCCCcccccCC--CcceeeecccccccCCCCCCCCcccCCchhh
Q 007642          294 WILANSKPCPRCKRPIEKNQGCMHMTCTPP--CKFEFCWLCLGQWSDHGERTGGFYACNRYET  354 (595)
Q Consensus       294 wi~~ntK~CPkC~~~IEK~~GCnhmtC~~~--C~~~FCw~C~~~~~~H~~~~g~~y~C~~~~~  354 (595)
                      ||.+++|+||+|+.+|||++|||||+|+ .  |+++|||+|+++|..|+.   .+|.||+|++
T Consensus         1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~-~~~C~~~FCw~C~~~~~~~~~---~~y~C~~y~~   59 (60)
T 1wd2_A            1 WIAANTKECPKCHVTIEKDGGCNHMVCR-NQNCKAEFCWVCLGPWEPHGS---AWYNCNRYNE   59 (60)
T ss_dssp             CCCCCCCCCTTTCCCCSSCCSCCSSSCC-SSGGGSCCSSSSCSCSGGGGT---SSSSSCSCCC
T ss_pred             CccccceECcCCCCeeEeCCCCCcEEEC-CCCcCCEEeeCcCCCcccCCC---ccccCCCccc
Confidence            6888999999999999999999999998 7  999999999999999975   6899999963

PyMOL of 1wd2

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4	Back alignment and structure

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}	Back alignment and structure

>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}	Back alignment and structure

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1	Back alignment and structure

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}	Back alignment and structure

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}	Back alignment and structure

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A	Back alignment and structure

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2	Back alignment and structure

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}	Back alignment and structure

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}	Back alignment and structure

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B	Back alignment and structure

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}	Back alignment and structure

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}	Back alignment and structure

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}	Back alignment and structure

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}	Back alignment and structure

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}	Back alignment and structure

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}	Back alignment and structure

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C	Back alignment and structure

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}	Back alignment and structure

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B	Back alignment and structure

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2	Back alignment and structure

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A	Back alignment and structure

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}	Back alignment and structure

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2	Back alignment and structure

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A	Back alignment and structure

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}	Back alignment and structure

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}	Back alignment and structure

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}	Back alignment and structure

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1	Back alignment and structure

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1	Back alignment and structure

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C	Back alignment and structure

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1	Back alignment and structure

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B	Back alignment and structure

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A	Back alignment and structure

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A	Back alignment and structure

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}	Back alignment and structure

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A	Back alignment and structure

>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C	Back alignment and structure

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*	Back alignment and structure

>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}	Back alignment and structure

>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A	Back alignment and structure

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*	Back alignment and structure

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A	Back alignment and structure

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4	Back alignment and structure

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B	Back alignment and structure

>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}	Back alignment and structure

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}	Back alignment and structure

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A	Back alignment and structure

>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A	Back alignment and structure

>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*	Back alignment and structure

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}	Back alignment and structure

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3	Back alignment and structure

>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1	Back alignment and structure

>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}	Back alignment and structure

>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}	Back alignment and structure

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3	Back alignment and structure

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3	Back alignment and structure

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}	Back alignment and structure

>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}	Back alignment and structure

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*	Back alignment and structure

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1	Back alignment and structure

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*	Back alignment and structure

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}	Back alignment and structure

>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4	Back alignment and structure

>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}	Back alignment and structure

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		595
d1wd2a_		60	g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Ho	2e-22
d2ct7a1		73	g.44.1.4 (A:8-80) Ring finger protein 31 {Human (H	3e-15
d2ct7a1		73	g.44.1.4 (A:8-80) Ring finger protein 31 {Human (H	1e-07
d1wima_		94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	2e-12
d1rmda2		86	g.44.1.1 (A:1-86) V(D)J recombination activating p	0.004

>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 60	Back information, alignment and structure


class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Ariadne-1 protein homolog
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.8 bits (220), Expect = 2e-22
 Identities = 33/61 (54%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 294 WILANSKPCPRCKRPIEKNQGCMHMTCTPP-CKFEFCWLCLGQWSDHGERTGGFYACNRY 352
           WI AN+K CP+C   IEK+ GC HM C    CK EFCW+CLG W  HG     +Y CNRY
Sbjct: 1   WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG---SAWYNCNRY 57

Query: 353 E 353
            
Sbjct: 58  N 58

PyMOL of d1wd2a_

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Length = 73	Back information, alignment and structure

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Length = 73	Back information, alignment and structure

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		595
d1wd2a_		60	Ariadne-1 protein homolog {Human (Homo sapiens) [T	99.79
d1wima_		94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	99.48
d2ct7a1		73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	98.95
d2ct7a1		73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	98.94
d1jm7a_		103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.63
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	98.51
d1t1ha_		78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.47
d2c2la2		80	STIP1 homology and U box-containing protein 1, STU	98.46
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	98.43
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.29
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.23
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.23
d1bora_		56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.23
d2baya1		56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.16
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	98.11
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.05
d1v87a_		114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.98
d1q5wa_		31	Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.98
d1wgma_		98	Ubiquitin conjugation factor E4A {Human (Homo sapi	97.76
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.18
d3dplr1		88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.14
d1v92a_		46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	94.56
d1wd2a_		60	Ariadne-1 protein homolog {Human (Homo sapiens) [T	92.87
d2cs3a1		80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	92.84
d2gqea1		29	Nuclear pore complex protein nup153 {Human (Homo s	86.09
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	85.61
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	84.44
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	82.93
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	82.56
d1bora_		56	Acute promyelocytic leukaemia proto-oncoprotein PM	81.92
d2csva1		59	Tripartite motif-containing protein 29 {Human (Hom	81.89
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	81.05

>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Ariadne-1 protein homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.9e-21  Score=147.13  Aligned_cols=58  Identities=57%  Similarity=1.417  Sum_probs=52.7

Q ss_pred             HHHhcCccCCCCCcceeecCCCCccccc-CCCcceeeecccccccCCCCCCCCcccCCchhh
Q 007642          294 WILANSKPCPRCKRPIEKNQGCMHMTCT-PPCKFEFCWLCLGQWSDHGERTGGFYACNRYET  354 (595)
Q Consensus       294 wi~~ntK~CPkC~~~IEK~~GCnhmtC~-~~C~~~FCw~C~~~~~~H~~~~g~~y~C~~~~~  354 (595)
                      ||..|||+||+|+.+|||++|||||+|+ +.|+++|||+|+++|..|+.   ++|.|++|++
T Consensus         1 wi~~ntK~CP~C~~~ieK~~GCnhM~C~~~~C~~~fCw~C~~~~~~~~~---~~~~C~~~~e   59 (60)
T d1wd2a_           1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS---AWYNCNRYNE   59 (60)
T ss_dssp             CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGT---SSSSSCSCCC
T ss_pred             CchhcCcCCCCCCCeEEECCCCCCeEeCCCCCCCeEECCCCCccccCCC---CCCCCcCCcc
Confidence            7889999999999999999999999996 14999999999999999875   7899999963

PyMOL of d1wd2a_

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure