Citrus Sinensis ID: 007672
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 594 | 2.2.26 [Sep-21-2011] | |||||||
| O22898 | 660 | Long chain acyl-CoA synth | yes | no | 0.915 | 0.824 | 0.707 | 0.0 | |
| Q9T0A0 | 666 | Long chain acyl-CoA synth | no | no | 0.900 | 0.803 | 0.525 | 1e-169 | |
| Q9T009 | 666 | Long chain acyl-CoA synth | no | no | 0.912 | 0.813 | 0.507 | 1e-165 | |
| Q9C7W4 | 665 | Long chain acyl-CoA synth | no | no | 0.909 | 0.812 | 0.510 | 1e-164 | |
| Q9XIA9 | 665 | Long chain acyl-CoA synth | no | no | 0.900 | 0.804 | 0.475 | 1e-146 | |
| Q8LPS1 | 701 | Long chain acyl-CoA synth | no | no | 0.818 | 0.693 | 0.420 | 3e-97 | |
| Q8LKS5 | 700 | Long chain acyl-CoA synth | no | no | 0.819 | 0.695 | 0.402 | 2e-95 | |
| Q1ZXQ4 | 673 | Fatty acyl-CoA synthetase | yes | no | 0.890 | 0.786 | 0.357 | 2e-94 | |
| Q55DR6 | 667 | Fatty acyl-CoA synthetase | no | no | 0.828 | 0.737 | 0.372 | 2e-91 | |
| Q9ULC5 | 683 | Long-chain-fatty-acid--Co | yes | no | 0.814 | 0.708 | 0.352 | 4e-83 |
| >sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/544 (70%), Positives = 463/544 (85%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FAA+VEEG +G DGKPSVGPVYRNLL+ GFP +DS++ TAWDIFS SV+K+P N M
Sbjct: 1 MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct: 61 LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct: 121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
+++ E A + G+K YSW +FLH+G+ + PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct: 181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct: 241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct: 301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
+ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct: 361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
G T + FPDEMCM+GT G +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct: 421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540
Query: 541 IIED 544
+++D
Sbjct: 541 VVQD 544
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)). Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 597 bits (1538), Expect = e-169, Method: Compositional matrix adjust.
Identities = 281/535 (52%), Positives = 382/535 (71%)
Query: 2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
K + QVEEGKEG DG+PSVGPVYR++ A +GFP +++ WD+F MSV+KYP N ML
Sbjct: 5 KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64
Query: 62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
G R VDGK G YVW+TY+EVY+ V+++ ++LR+ G + + GIYGAN P+W+ +MEAC
Sbjct: 65 GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124
Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
NA L CVPLYDTLG AV FI+ H+E+ VFV++KK+ EL S + ++ +V F
Sbjct: 125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184
Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
++ EQKE A G+ Y+WDEFL LG+ + ++ + +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244
Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
+E+I T ++GV L + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304
Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
L +DL ELKPT+ VPRV ++++ G++K L + L++ IFD+ + YK +M G
Sbjct: 305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364
Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
EASPL D L F KVK LGG +R+++SG APL++ VE FLRV C ++QGYGLTE+C
Sbjct: 365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424
Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
T V PDE+ M+GT GP ++RLE VPEM Y L GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484
Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
DLT+E +IDGW HTGD+G+ P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIY 539
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 581 bits (1497), Expect = e-165, Method: Compositional matrix adjust.
Identities = 275/542 (50%), Positives = 370/542 (68%)
Query: 2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
K F +VE KE DG PSVGPVYR+ A NGFP+ + + WDIF +V+KYP NRML
Sbjct: 5 KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64
Query: 62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
G R +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct: 65 GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124
Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
NA L CVPLYDTLG GAV FI+ HAE+ FV++KK+ EL S + ++ +V F
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184
Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
+ EQKE A + G+ +SWDEFL LG+ + E+ +P +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244
Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
+E+I T +GV FL ++ DVY+S+LPLAH+ DR IEE + G S+G++ GD+
Sbjct: 245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304
Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
L +DL ELKP++ VPRV ++++ G+++ L ++++FD + YK M G
Sbjct: 305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364
Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
ASP D L F KVK LGG +R+++SG APL++ +E FLRV C ++QGYGLTE+C
Sbjct: 365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424
Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
T FPDE+ M+GT GP ++RLE VPEM Y L P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484
Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
DLT+E IDGW HTGD+G+ PNG +KIIDRKKN+ K++QGEYVA+E LENVY +
Sbjct: 485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544
Query: 542 IE 543
IE
Sbjct: 545 IE 546
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 577 bits (1488), Expect = e-164, Method: Compositional matrix adjust.
Identities = 276/541 (51%), Positives = 376/541 (69%), Gaps = 1/541 (0%)
Query: 4 FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
+ +VE+GK+G DG PSVGPVYR++ A +GFP DL +AWDIF +SV+K P N MLG
Sbjct: 6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65
Query: 63 WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
R VDGK G YVW+TYKEV+ V+++ +++R G G + GIYGAN P+W+ +MEACN
Sbjct: 66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125
Query: 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
A L CVPLYDTLG GA+ FI+ HAE+ F ++ K+ ELL +S + L+ +V F +
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185
Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
T Q+ A + + YSWD+FL LG+ E+ + ++CTIMYTSGT+GDPKGV+LT+
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245
Query: 243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
E+I + GV L ++++T DVYLS+LPLAHI DRVIEE AS+G++ GD+
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305
Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
L +D+ LKPT+ VPRV E+I+ G+++ L + +++++F+ +KYK M G
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365
Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
+ASP+AD + F+KVK LGG +RL++SG APL+ +E FLRV CA ++QGYGLTE+CG
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425
Query: 423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
T V P+E+ M+GT GP ++RLE VPEMGY L P GE+C+RGKTLFSGYYK
Sbjct: 426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485
Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
DLT+E IDGW HTGD+G+ P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y I
Sbjct: 486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545
Query: 543 E 543
E
Sbjct: 546 E 546
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 520 bits (1338), Expect = e-146, Method: Compositional matrix adjust.
Identities = 255/536 (47%), Positives = 347/536 (64%), Gaps = 1/536 (0%)
Query: 8 VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
VEEG+ PS GPVYR A +G + +D+++ W FS +V+KYP +MLG R
Sbjct: 11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70
Query: 68 DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
D K GPY W TYKE ++ ++I SA+R+ G +PG GIYGANCP+W+ AMEAC + +
Sbjct: 71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130
Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
VPLYD+LG AV FI++HAE+ VFVQ+K V +LS + L+ +V F +++ QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190
Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
E A + +SW+EF +G ++E + + +ICTIMYTSGT+G+PKGV+L + I+
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250
Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
V +D L+ + DV+ S+LPLAH D+V+E YF RG+SVGY+ GD+ L DD
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310
Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
+ LKPT+ GVPRV++K++ GI + + +R+++FD Y YKL M G+ Q EASP
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370
Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
D L F K+K LGGR +++SG APL VEEFLR+ + L QGYGLTE+CG +
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430
Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
MVGT G E RL VPEMGY D P GE+C+RG ++FSGY+K DLT
Sbjct: 431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490
Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
+ +IDGWFHTGDIG+ +G +KIIDRKKN+ K+SQGEYVA+E LEN Y P+I
Sbjct: 491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLI 546
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (913), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 211/502 (42%), Positives = 287/502 (57%), Gaps = 16/502 (3%)
Query: 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
D+ T D F +V + + LG R VDG G Y W TY E + S L G
Sbjct: 82 DIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIP 141
Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
G VGIY N P+W+ AC++ S + VPLYDTLGP AV FI++HA + +F + +
Sbjct: 142 MGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETL 201
Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAE-QKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ 218
LLS C S +V E + +G+K S+ L+ G+ N PP+
Sbjct: 202 NSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPK 259
Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
P ++ TI YTSGT+G PKGVVLTH + V+G F K DVY+S+LPLAHI
Sbjct: 260 PDDVATICYTSGTTGTPKGVVLTHANLIANVAGS-----SFSVKFFSSDVYISYLPLAHI 314
Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
+R + G +VG+Y GD L DDL L+PT+ + VPR++ +I+ GI A++
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
L+ R+F+A Y K + G + ASP+ D L F K+K RLGGR+R + SG +PLS E
Sbjct: 375 GLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPE 431
Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPVSVYSELRLEEVPEMGY 457
V EFL+V + +GYG+TET + DE + G G + E++L +VPEM Y
Sbjct: 432 VMEFLKVCFGGRVTEGYGMTETS--CVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNY 489
Query: 458 SPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
+ D P P GE+CVRG +F+GYYK+ T+E I DGW HTGDIG LP G +KIIDRK
Sbjct: 490 TSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRK 549
Query: 516 KNLIKISQGEYVALEYLENVYC 537
KN+ K++QGEY+A E +ENVY
Sbjct: 550 KNIFKLAQGEYIAPEKIENVYA 571
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 350 bits (898), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 201/499 (40%), Positives = 284/499 (56%), Gaps = 12/499 (2%)
Query: 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
++ T D F +V+ Y N+ LG R DG G Y W TY E E I S L G
Sbjct: 82 EIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVN 141
Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
G VG+Y N P+W+ AC A S + VPLYDTLGP AV F+++HA + +F + +
Sbjct: 142 QGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTL 201
Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQP 219
LLS +R++V + TG+ S+ + L G+ + PP+P
Sbjct: 202 NILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKP 260
Query: 220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
+I TI YTSGT+G PKGVVLTH + V+G + E + DVY+S+LPLAHI
Sbjct: 261 EDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSV-----EAEFFPSDVYISYLPLAHIY 315
Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
+R + G +VG+Y GD+ L DD L+PT+ VPR++ +I++GI A++
Sbjct: 316 ERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGV 375
Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
+++R+F+ Y K + G R S D L F K+K +LGGR+R + SG +PLS +V
Sbjct: 376 VKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPDV 432
Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP 459
+FLR+ + +GYG+TET + D + G G + E++L +VPEM Y+
Sbjct: 433 MDFLRICFGCSVREGYGMTETSCVIS-AMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTS 491
Query: 460 LDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 517
D P P GE+CVRG +F GYYK+ + TRE + DGW HTGDIG LP G +KIIDRKKN
Sbjct: 492 DDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIIDRKKN 551
Query: 518 LIKISQGEYVALEYLENVY 536
+ K++QGEY+A E +ENVY
Sbjct: 552 IFKLAQGEYIAPEKIENVY 570
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (889), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 195/545 (35%), Positives = 307/545 (56%), Gaps = 16/545 (2%)
Query: 4 FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
+ VE G++ ++G G + RN ++ S D ++ T +D S +KY +
Sbjct: 27 YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82
Query: 62 GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
G R +G G + W +Y E I L G +P +VGI+ N +W+ A
Sbjct: 83 GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
S V Y+TLG +++++ +HAEI F + +++ L + + L+ ++CF
Sbjct: 143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
S+ E +A + G+ Y++DE + GK + + PP P + TIMYTSGT+G PKGV
Sbjct: 202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261
Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
++TH+ + + V V F+ ++ DV+ S+LP AH+L+RV+ F GA++G +
Sbjct: 262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316
Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
GD++ + ++ L PTL GVPRVFE+I + K + + L R +F+ Y K +
Sbjct: 317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376
Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
G+K + DL+ F K+K LGG++R+++SG APLS + E FLRV C ++QGYG +
Sbjct: 377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436
Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
E CG D+ VGT GP +E++L +VPE+GY + GEVC+RG ++ SG
Sbjct: 437 EGCGGDACKRLDDES-VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSISSG 495
Query: 479 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538
YYK+ + TRE DGWFHTGDIG+ +G + I+DRKKN+ K+SQGEYVA+E +E +
Sbjct: 496 YYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIVVK 555
Query: 539 APIIE 543
+ +E
Sbjct: 556 SEYVE 560
|
Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (863), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 190/510 (37%), Positives = 294/510 (57%), Gaps = 18/510 (3%)
Query: 36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
S D T +D++ + K + LG R + DGK G Y W +YK+ I SAL
Sbjct: 48 SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105
Query: 95 ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154
G G R+GI+ N P+WV + A SL+ V LY TLG A+ ++++H+EI +
Sbjct: 106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLC 165
Query: 155 QDKKVKELLSPDCRSAQRLRVMVCFTSL-TAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
+ K V+++LS ++ +V + L A + +K Y +F LG+ N +
Sbjct: 166 EGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQ 222
Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
P P ++CT++YTSG++G+PKGV+LTH + + V+G + + +DV++S+L
Sbjct: 223 HEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFS----PAGVIPEDVHMSYL 278
Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
PLAH +R + G +G++ G + L +D+ L+PT L G PRV++++H+ +
Sbjct: 279 PLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFT 338
Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
+ L++ +F+ K + + +G +P+ D L F K K RLGGR++ ++SG A
Sbjct: 339 VNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSA 394
Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVP 453
PL ++ EFLR C +V GYGL+E G +V +P++ VG GP E++L +VP
Sbjct: 395 PLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDNN-VGHVGPPLSACEMKLIDVP 453
Query: 454 EMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKI 511
EM Y D P P GEVC+RG +F GY+K+P+ T+E + DGWFHTGDIG+ NG + I
Sbjct: 454 EMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSI 513
Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAPI 541
IDRKKN+ K+SQGEYVA EYLE+V+ +P
Sbjct: 514 IDRKKNIFKLSQGEYVAAEYLESVFVRSPF 543
|
Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 309 bits (792), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 178/505 (35%), Positives = 283/505 (56%), Gaps = 21/505 (4%)
Query: 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG- 97
SD T +++F + LG+R PY W +YK+V + + S L G
Sbjct: 72 SDAKTMYEVFQRGLAVSDNGPCLGYRK----PNQPYRWLSYKQVSDRAEYLGSCLLHKGY 127
Query: 98 -AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
+ P VGI+ N P+W+ + AC S++ VPLYDTLGP A+ I++ A+I V
Sbjct: 128 KSSPDQFVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGPEAIVHIVNKADIAMVICDT 187
Query: 157 KKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI 214
+ +L + L+V++ + K+ ++GI+ S + +LGK + +
Sbjct: 188 PQKALVLIGNVEKGFTPSLKVIILMDPFDDDLKQRGEKSGIEILSLYDAENLGKEHFRKP 247
Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272
+PP P ++ I +TSGT+GDPKG ++TH+ I VS FL E T DDV +S+
Sbjct: 248 VPPSPEDLSVICFTSGTTGDPKGAMITHQNI---VSNAAAFLKCVEHAYEPTPDDVAISY 304
Query: 273 LPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK 332
LPLAH+ +R+++ + GA VG++ GD+ L DD+ LKPTL VPR+ +I++ ++
Sbjct: 305 LPLAHMFERIVQAVVYSCGARVGFFQGDIRLLADDMKTLKPTLFPAVPRLLNRIYDKVQN 364
Query: 333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 392
E PL++ + K + G + ++ D L F K++ LGGR+R++++G
Sbjct: 365 --EAKTPLKKFLLKLAVSSKFKELQKGIIRHDS--FWDKLIFAKIQDSLGGRVRVIVTGA 420
Query: 393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
AP+ST V F R + + YG TE G T P + P++ + ++LE+V
Sbjct: 421 APMSTSVMTFFRAAMGCQVYEAYGQTECTGGCTFTLPGDWTSGHVGVPLAC-NYVKLEDV 479
Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511
+M Y +++ GEVC++G +F GY K+P+ T+E++ DGW HTGDIG+ LPNG +KI
Sbjct: 480 ADMNYFTVNNE--GEVCIKGTNVFKGYLKDPEKTQEALDSDGWLHTGDIGRWLPNGTLKI 537
Query: 512 IDRKKNLIKISQGEYVALEYLENVY 536
IDRKKN+ K++QGEY+A E +EN+Y
Sbjct: 538 IDRKKNIFKLAQGEYIAPEKIENIY 562
|
Acyl-CoA synthetases (ACSL) activate long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL. May have a role in the survival of glioma cells. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 594 | ||||||
| 255548375 | 660 | long-chain-fatty-acid CoA ligase, putati | 0.915 | 0.824 | 0.805 | 0.0 | |
| 225437622 | 662 | PREDICTED: long chain acyl-CoA synthetas | 0.915 | 0.821 | 0.788 | 0.0 | |
| 224068616 | 665 | predicted protein [Populus trichocarpa] | 0.915 | 0.818 | 0.786 | 0.0 | |
| 356505647 | 662 | PREDICTED: long chain acyl-CoA synthetas | 0.915 | 0.821 | 0.781 | 0.0 | |
| 356572815 | 662 | PREDICTED: long chain acyl-CoA synthetas | 0.915 | 0.821 | 0.773 | 0.0 | |
| 356534712 | 660 | PREDICTED: long chain acyl-CoA synthetas | 0.915 | 0.824 | 0.75 | 0.0 | |
| 356499773 | 660 | PREDICTED: long chain acyl-CoA synthetas | 0.915 | 0.824 | 0.751 | 0.0 | |
| 357511417 | 668 | Annotation was added to scaffolds in Nov | 0.915 | 0.814 | 0.741 | 0.0 | |
| 449518374 | 660 | PREDICTED: long chain acyl-CoA synthetas | 0.915 | 0.824 | 0.755 | 0.0 | |
| 297824813 | 660 | long-chain-fatty-acid--CoA ligase family | 0.915 | 0.824 | 0.713 | 0.0 |
| >gi|255548375|ref|XP_002515244.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223545724|gb|EEF47228.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/544 (80%), Positives = 492/544 (90%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK+FA +VEEG+EGKDG PSVGPVYRN+L+ N FP+ D D++TAWD+FS+SV+KYP N+M
Sbjct: 1 MKVFAVEVEEGREGKDGNPSVGPVYRNVLSKNEFPAPDCDMDTAWDLFSVSVKKYPENKM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR FV+GK GPYVWKTYKEVYEEVLQI SALRASGAEPGCRVGIYG+NCPQW+ AMEA
Sbjct: 61 LGWRKFVNGKVGPYVWKTYKEVYEEVLQIGSALRASGAEPGCRVGIYGSNCPQWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C+A SL+CVPLYDTLGP AVNFI+DHAEIDF FVQDKKVKELL+PDC SA RL+ +VCFT
Sbjct: 121 CSAHSLVCVPLYDTLGPNAVNFIVDHAEIDFAFVQDKKVKELLNPDCGSASRLKTVVCFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
SLT E+K+ A Q IKPYSW+EFL LGK N E PP PF+ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAEQIQIKPYSWEEFLRLGKENPSETSPPHPFSICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
THE + +F+ VDLF++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFFR+GA+VGYYHGD
Sbjct: 241 THEAVMSFLRSVDLFMEQFEDKMTVDDVYLSFLPLAHILDRMIEEYFFRKGAAVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LNAL+DDLMELKPT LAGVPRVFEKIHEGIKKALEEL P+RRRIFDALYKYKL WMN+GY
Sbjct: 301 LNALKDDLMELKPTFLAGVPRVFEKIHEGIKKALEELNPVRRRIFDALYKYKLYWMNLGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
KQ+ ASPLADLLAFRKVKA+LGGRLRL+ISG APLSTEVEEFLRVTCCAF+VQGYGLTET
Sbjct: 361 KQKYASPLADLLAFRKVKAKLGGRLRLIISGAAPLSTEVEEFLRVTCCAFVVQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
CGP T+ FPDEMCM+G G V V +ELRLEEVPEMGY+PL +PP GE+CVRGKTLFSGYY
Sbjct: 421 CGPVTIGFPDEMCMMGAVGAVCVCNELRLEEVPEMGYNPLGNPPRGEICVRGKTLFSGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LTRE + DGWFHTGDIG+I PNGVVKIIDRKK+LIK+SQGEY+ALEYLENVY + P
Sbjct: 481 KNPELTRECMKDGWFHTGDIGEIHPNGVVKIIDRKKHLIKLSQGEYIALEYLENVYSITP 540
Query: 541 IIED 544
I+ED
Sbjct: 541 IVED 544
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437622|ref|XP_002278345.1| PREDICTED: long chain acyl-CoA synthetase 1 [Vitis vinifera] gi|297744008|emb|CBI36978.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/544 (78%), Positives = 486/544 (89%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FA QVE G+EG+DGKPSVGPVYRN LA +GFP +DS+LNTAWD +S +KYPGNRM
Sbjct: 1 MKTFAVQVENGREGRDGKPSVGPVYRNFLAKSGFPPMDSNLNTAWDNLRISSEKYPGNRM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR FV GK GPY WKTY+EVYEE+L I SAL+ASGA+PG RVGIYG+NCPQW+ AMEA
Sbjct: 61 LGWREFVGGKLGPYKWKTYREVYEEILHIGSALQASGAQPGSRVGIYGSNCPQWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C+A SLICVPLYDTLGPGAV++I+DHAE+DFVFVQDKKVKELL+PDCRSA+RL++MVCFT
Sbjct: 121 CSAYSLICVPLYDTLGPGAVDYIIDHAEVDFVFVQDKKVKELLNPDCRSAKRLKLMVCFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
S T EQK+ A GIKPYSWDEFLH+GK N E+ PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SPTEEQKDKAADIGIKPYSWDEFLHMGKENPSEVFPPQPLDICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
THE + T V GVD+F++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFF +GASVGYYHGD
Sbjct: 241 THENVTTIVRGVDIFMEQFEDKMTVDDVYLSFLPLAHILDRIIEEYFFHKGASVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
+NALR+DLMELKPTL AGVPRVFE++HEGIKKA++EL P+RRRIF LYKYKL+WMN GY
Sbjct: 301 MNALREDLMELKPTLFAGVPRVFERVHEGIKKAVQELNPIRRRIFGVLYKYKLSWMNSGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
K REASPLADLLAFRKVKARLGGR+RL+ISGGAPLSTEVEEFLRVT CAFL QGYGLTET
Sbjct: 361 KHREASPLADLLAFRKVKARLGGRVRLIISGGAPLSTEVEEFLRVTSCAFLTQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
CG T++ FPDEM M+GT G VSVYSELRLEEVPEMGY P DPP GE+CVRGKT+F+GY+
Sbjct: 421 CGLTSIGFPDEMSMIGTVGAVSVYSELRLEEVPEMGYDPFGDPPRGEICVRGKTIFAGYH 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LT ESI DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEYVA+EYLE VY A
Sbjct: 481 KNPELTLESIRDGWFHTGDIGEMLPNGVLKIIDRKKNLVKLSQGEYVAVEYLEKVYGTAD 540
Query: 541 IIED 544
I+ED
Sbjct: 541 IVED 544
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068616|ref|XP_002302784.1| predicted protein [Populus trichocarpa] gi|222844510|gb|EEE82057.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/547 (78%), Positives = 487/547 (89%), Gaps = 3/547 (0%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
+K FAAQVEEG+EGKDGKPSVGPVYRNLL+ +P +D D+ T+WDIFS S +KYP +M
Sbjct: 3 LKAFAAQVEEGREGKDGKPSVGPVYRNLLSKKEYPPLDRDVTTSWDIFSSSAKKYPEYKM 62
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR FVDGK GPYVWKTYKEVY+EVLQI SALRASGAEPG RVGIYG+NCPQW+EAMEA
Sbjct: 63 LGWRKFVDGKVGPYVWKTYKEVYDEVLQISSALRASGAEPGYRVGIYGSNCPQWIEAMEA 122
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
CNA SL+CVPLYDT+GP AVNFI+DHAEIDFVFVQDKKVKELL PDC SAQRL+ +VCFT
Sbjct: 123 CNAQSLVCVPLYDTIGPRAVNFIIDHAEIDFVFVQDKKVKELLDPDCASAQRLKAIVCFT 182
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
SLT E+K+ A Q GIK YSW+E+L +GK N EI PPQP +ICTIMYTSGTSGDPKGVV+
Sbjct: 183 SLTEEEKDRAAQMGIKSYSWEEYLCMGKENPSEIFPPQPLSICTIMYTSGTSGDPKGVVI 242
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
HET+A FV G+DLF++QFEDKMT DDVYLSFLPLAH+LDR+IEEYFFR+GASVGYYHGD
Sbjct: 243 LHETVAAFVRGIDLFMEQFEDKMTTDDVYLSFLPLAHVLDRMIEEYFFRKGASVGYYHGD 302
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIK---KALEELRPLRRRIFDALYKYKLAWMN 357
LNALRDDLMELKPT LAGVPRVFEKI EG++ KAL+EL PLRR IFD LY+YKL WMN
Sbjct: 303 LNALRDDLMELKPTCLAGVPRVFEKIQEGMEIPIKALQELSPLRRNIFDVLYRYKLGWMN 362
Query: 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 417
GY+Q+ ASPLADLLAFRKVKA+LGGRLRL+I GGA LSTEVEEFLRVT CAF++QGYGL
Sbjct: 363 RGYRQKYASPLADLLAFRKVKAKLGGRLRLIICGGASLSTEVEEFLRVTSCAFVIQGYGL 422
Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
TE+CGP T+ FPDEMCM+GT G V+VY++L LEEVPEMGY PL +PPCGE+C+RGKTLFS
Sbjct: 423 TESCGPATMAFPDEMCMLGTVGAVAVYNDLCLEEVPEMGYDPLGNPPCGEICLRGKTLFS 482
Query: 478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
GYYKNP+LTRES+ DGWFHTGDIG+ILPNGVVKIIDRKKNLIK+SQGEY+A+EYLENVY
Sbjct: 483 GYYKNPELTRESMKDGWFHTGDIGEILPNGVVKIIDRKKNLIKLSQGEYIAIEYLENVYN 542
Query: 538 VAPIIED 544
PI+ED
Sbjct: 543 NTPIVED 549
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505647|ref|XP_003521601.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/544 (78%), Positives = 483/544 (88%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FAA+VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KYP NRM
Sbjct: 1 MKSFAAKVEEGREGINGELSIGPVYRNLLSKNQFPPLDPDLSTAWDIFSMAVKKYPKNRM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR FVD K GPYVWKTYKEVY+EVL I SALRASGAE G ++GIYGANCPQW+ AMEA
Sbjct: 61 LGWREFVDAKIGPYVWKTYKEVYDEVLHIGSALRASGAELGSKIGIYGANCPQWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C A SL+CVPLYDTLGPGAVNFI+DH E+DFVFVQD+KV LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHGELDFVFVQDRKVIHLLNPDCKSAQRLKAMVSFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
SLT E+K+ A+ GIKPYSW EFLH+GK N I PQP NICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAISIGIKPYSWQEFLHMGKENPSNISAPQPNNICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
THE IATFV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENIATFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
K ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
CG TT+ +PDEMCM+GT GPVSVY+E+RLEEVPEMGY+PL P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSVYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LTRE+I DGWFHTGDI ++ PNGVVKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQPNGVVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540
Query: 541 IIED 544
I+ED
Sbjct: 541 IVED 544
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572815|ref|XP_003554561.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/544 (77%), Positives = 481/544 (88%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FA +VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KY NRM
Sbjct: 1 MKGFAVKVEEGREGTNGELSIGPVYRNLLSKNEFPPLDPDLSTAWDIFSMAVKKYRKNRM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR FVDGK GPYVWKTY+EVY+EVL I SALRASGAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61 LGWREFVDGKIGPYVWKTYEEVYDEVLHIGSALRASGAEPGSRIGIYGANCPQWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C A +LICVPLYDTLGPGAVNFI+DH E+DFVFVQDKKV LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHNLICVPLYDTLGPGAVNFIIDHGELDFVFVQDKKVIHLLNPDCKSAQRLKAMVSFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
SLT E+K+ A+ GIKPYSW+EFLH+GK N I PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAIAIGIKPYSWEEFLHMGKENPSNISPPQPNSICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
THE I FV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENITVFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
K ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
CG TT+ +PDEMCM+GT GPVS+Y+E+RLEEVPEMGY+PL P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSIYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LTRE+I DGWFHTGDI ++ NG VKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQLNGAVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540
Query: 541 IIED 544
I+ED
Sbjct: 541 IVED 544
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534712|ref|XP_003535896.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/544 (75%), Positives = 475/544 (87%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK F+ +VEEG+EGK+G SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1 MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LG R VDGK GPYVWKTYKEVY+EVL + SALRASG+EPG ++GIYG+NCP+W+ AME
Sbjct: 61 LGKRKIVDGKIGPYVWKTYKEVYDEVLHMSSALRASGSEPGTKIGIYGSNCPEWIVAMEV 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C+A S ICVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFICVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
+LT E+K A GIKPYSW EFLHLGK N PPQ +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 TLTEEEKAKATAIGIKPYSWHEFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
T+E + V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TYENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F LY YKL WM GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
K REAS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHREASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
CGPTT+ FPDEMCM+GT G VS+Y+E++LEEVPEMGY+PL+ PPCGE+CVRGKT+F+ YY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIKLEEVPEMGYNPLETPPCGEICVRGKTVFTAYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGITP 540
Query: 541 IIED 544
I+ED
Sbjct: 541 IVED 544
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499773|ref|XP_003518711.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/544 (75%), Positives = 475/544 (87%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK F+ +VEEG+EGK+G SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1 MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LG R VD K GPYVWKTYKEVY+EVL + SALRASGAEPG ++GIYG+NCP+W+ AMEA
Sbjct: 61 LGKRKIVDEKIGPYVWKTYKEVYDEVLHMSSALRASGAEPGTKIGIYGSNCPEWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C+A S +CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
SLT E+K A GIKPYSW +FLHLGK N PPQ +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKAKATAIGIKPYSWHDFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
T+E + V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TNENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F LY YKL WM GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
K R+AS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHRQASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
CGPTT+ FPDEMCM+GT G VS+Y+E+ LEEVPEMGY+PL+ PPCGE+CVRGKT+F+GYY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIMLEEVPEMGYNPLETPPCGEICVRGKTVFTGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY V P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGVTP 540
Query: 541 IIED 544
I+ED
Sbjct: 541 IVED 544
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511417|ref|XP_003625997.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355501012|gb|AES82215.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/550 (74%), Positives = 476/550 (86%), Gaps = 6/550 (1%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FAA+VEEG+EGK+GK SVGPVYRNLLA + FP D DL TAWDIFS++ +KYP NRM
Sbjct: 1 MKSFAAKVEEGREGKNGKLSVGPVYRNLLAKDQFPPSDPDLTTAWDIFSVAAKKYPQNRM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR FVDGKFG YVWKTYK+VY+EV+ I SALRASGA+ G R+G+YG+NCPQW+ AMEA
Sbjct: 61 LGWREFVDGKFGSYVWKTYKQVYDEVMHIGSALRASGAQHGSRIGVYGSNCPQWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C A SL+CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKV +LLSPDC+SA RL+ +VCFT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVMQLLSPDCKSASRLKAIVCFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
LT E+K+ A G+KPYSW+EFL +GK I PPQ +ICTIMYTSGTSGDP+GVVL
Sbjct: 181 KLTNEEKDKATSIGVKPYSWEEFLQMGKETPSTISPPQAHDICTIMYTSGTSGDPQGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG- 299
THE I FV G+D+F++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHG
Sbjct: 241 THENITYFVRGMDIFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGV 300
Query: 300 -----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354
DL ALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F LYK KL
Sbjct: 301 YSIIHDLTALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYKRKLG 360
Query: 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQG 414
WM GYK ASP ADLLAFRKVKARLGGR+RL+I+GGAPLS+E+EEFLRVT AF+ QG
Sbjct: 361 WMKKGYKHCNASPFADLLAFRKVKARLGGRVRLIITGGAPLSSEIEEFLRVTSGAFVCQG 420
Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
YGLTETCG TT+ FPDEMCM+GT GPVS+Y+E++LEEVPEMGY+PL +P CGE+C+RGK+
Sbjct: 421 YGLTETCGSTTLAFPDEMCMLGTVGPVSIYNEIQLEEVPEMGYNPLGNPSCGEICLRGKS 480
Query: 475 LFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
+FSGY+KNP+LT+ESI+DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLEN
Sbjct: 481 VFSGYHKNPELTKESIVDGWFHTGDIGEMQPNGVVKIIDRKKNLIKLSQGEYIALEYLEN 540
Query: 535 VYCVAPIIED 544
VY + PI+ED
Sbjct: 541 VYGITPIVED 550
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449518374|ref|XP_004166217.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/545 (75%), Positives = 472/545 (86%), Gaps = 1/545 (0%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK F+ +VEEG+EGKDGKPSVGPVYRN+LA FPS DL+T+WD+FS+S KY RM
Sbjct: 1 MKRFSVKVEEGREGKDGKPSVGPVYRNVLAEKEFPSPYEDLSTSWDLFSVSANKYAERRM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR FVDGK GPY+WKTYKEVY +VL I SALRA GAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61 LGWRKFVDGKPGPYIWKTYKEVYGDVLNIGSALRAIGAEPGSRIGIYGANCPQWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
CNA SLICVPLYDTLG GAVNFI+DHAEID VF+QDKK KELL+ C +RL+V +CFT
Sbjct: 121 CNAHSLICVPLYDTLGHGAVNFIIDHAEIDIVFIQDKKAKELLNSGCTIPERLKVFICFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV 239
SL E+K A G+KPYSWDEFL L K N EI PP+P +ICTIMYTSGTSG PKGVV
Sbjct: 181 SLKEEEKISATNNGMKPYSWDEFLRLVRKENPSEISPPRPLDICTIMYTSGTSGTPKGVV 240
Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
LT ETI TF+ GVD+ ++QFEDKMT DDVYLSFLPLAHILDR +EEYFFR+GASVGYYHG
Sbjct: 241 LTQETITTFIRGVDIQMEQFEDKMTEDDVYLSFLPLAHILDRTVEEYFFRKGASVGYYHG 300
Query: 300 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359
DL+A++DDLMELKPTLL GVPRVFEKIHEGIK+A++ L P+RR+ FD LYKYKL+WMN G
Sbjct: 301 DLDAIKDDLMELKPTLLVGVPRVFEKIHEGIKQAVQVLNPVRRKAFDLLYKYKLSWMNSG 360
Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE 419
YKQ++ASPLADLLAFRKVKARLGGRLRL+ISGGA LSTEVEEFLRVTCCAF VQGYGLTE
Sbjct: 361 YKQKDASPLADLLAFRKVKARLGGRLRLIISGGAALSTEVEEFLRVTCCAFFVQGYGLTE 420
Query: 420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY 479
TCGPTT+ FPDEMCM+G G V++++EL LEEVP+MGY+PL D PCGE+CVRGKT+F+ Y
Sbjct: 421 TCGPTTIGFPDEMCMLGNVGGVTLFNELCLEEVPDMGYNPLGDRPCGEICVRGKTVFTEY 480
Query: 480 YKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA 539
YK+P+LT+ESI DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLENVY +
Sbjct: 481 YKDPELTKESIKDGWFHTGDIGEMFPNGVVKIIDRKKNLIKLSQGEYIALEYLENVYSIT 540
Query: 540 PIIED 544
PI+ED
Sbjct: 541 PIVED 545
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297824813|ref|XP_002880289.1| long-chain-fatty-acid--CoA ligase family protein [Arabidopsis lyrata subsp. lyrata] gi|297326128|gb|EFH56548.1| long-chain-fatty-acid--CoA ligase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/544 (71%), Positives = 461/544 (84%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FAA+ EEG +G DGKPSVGPVYRNLL+ GFP +DS++ TAWDIFS SV+K+P N M
Sbjct: 1 MKSFAAKAEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR VD K GPY+WKTYKEVYEEVLQI SALRA GAEPGCRVGIYG NCPQW+ AMEA
Sbjct: 61 LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAVGAEPGCRVGIYGINCPQWIIAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct: 121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
+++ E A + G+K YSW +FLH+G+ E PP+ NICTIMYTSGTSGDPKGVVL
Sbjct: 181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEETNPPKALNICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
TH+ +ATFV G+D+F+DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHGD
Sbjct: 241 THQAVATFVVGMDIFMDQFEDKMTHDDVYLSFLPLAHILDRLNEEYFFRKGASVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAWMN GY
Sbjct: 301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKHKLAWMNRGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
+ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct: 361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
G T + FPDEMCM+GT G +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct: 421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVAEMGYDPLGENPAGEICIRGQCMFSGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LT E I DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++
Sbjct: 481 KNPELTEEVIKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540
Query: 541 IIED 544
+++D
Sbjct: 541 VVQD 544
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 594 | ||||||
| TAIR|locus:2065195 | 660 | LACS1 "AT2G47240" [Arabidopsis | 0.915 | 0.824 | 0.707 | 3e-220 | |
| TAIR|locus:2138141 | 666 | LACS4 "long-chain acyl-CoA syn | 0.900 | 0.803 | 0.525 | 1.4e-156 | |
| TAIR|locus:2136148 | 666 | AT4G11030 [Arabidopsis thalian | 0.912 | 0.813 | 0.507 | 5.2e-152 | |
| TAIR|locus:2014265 | 665 | LACS3 "long-chain acyl-CoA syn | 0.909 | 0.812 | 0.510 | 3.7e-151 | |
| TAIR|locus:2010177 | 665 | LACS2 "long-chain acyl-CoA syn | 0.900 | 0.804 | 0.475 | 2.9e-135 | |
| TAIR|locus:2083013 | 701 | LACS6 "AT3G05970" [Arabidopsis | 0.819 | 0.694 | 0.423 | 9.7e-96 | |
| TAIR|locus:2143661 | 700 | LACS7 "AT5G27600" [Arabidopsis | 0.826 | 0.701 | 0.403 | 5.7e-91 | |
| DICTYBASE|DDB_G0269474 | 673 | fcsB "fatty acyl-CoA synthetas | 0.930 | 0.821 | 0.354 | 1.2e-90 | |
| DICTYBASE|DDB_G0269242 | 667 | fcsA "long-chain-fatty-acid-Co | 0.823 | 0.733 | 0.377 | 2.3e-87 | |
| UNIPROTKB|F1NNV2 | 683 | ACSL5 "Uncharacterized protein | 0.833 | 0.724 | 0.352 | 1.4e-85 |
| TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2127 (753.8 bits), Expect = 3.0e-220, P = 3.0e-220
Identities = 385/544 (70%), Positives = 463/544 (85%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FAA+VEEG +G DGKPSVGPVYRNLL+ GFP +DS++ TAWDIFS SV+K+P N M
Sbjct: 1 MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct: 61 LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct: 121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
+++ E A + G+K YSW +FLH+G+ + PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct: 181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct: 241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct: 301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
+ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct: 361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
G T + FPDEMCM+GT G +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct: 421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540
Query: 541 IIED 544
+++D
Sbjct: 541 VVQD 544
|
|
| TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1526 (542.2 bits), Expect = 1.4e-156, P = 1.4e-156
Identities = 281/535 (52%), Positives = 382/535 (71%)
Query: 2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
K + QVEEGKEG DG+PSVGPVYR++ A +GFP +++ WD+F MSV+KYP N ML
Sbjct: 5 KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64
Query: 62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
G R VDGK G YVW+TY+EVY+ V+++ ++LR+ G + + GIYGAN P+W+ +MEAC
Sbjct: 65 GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124
Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
NA L CVPLYDTLG AV FI+ H+E+ VFV++KK+ EL S + ++ +V F
Sbjct: 125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184
Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
++ EQKE A G+ Y+WDEFL LG+ + ++ + +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244
Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
+E+I T ++GV L + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304
Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
L +DL ELKPT+ VPRV ++++ G++K L + L++ IFD+ + YK +M G
Sbjct: 305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364
Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
EASPL D L F KVK LGG +R+++SG APL++ VE FLRV C ++QGYGLTE+C
Sbjct: 365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424
Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
T V PDE+ M+GT GP ++RLE VPEM Y L GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484
Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
DLT+E +IDGW HTGD+G+ P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIY 539
|
|
| TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1483 (527.1 bits), Expect = 5.2e-152, P = 5.2e-152
Identities = 275/542 (50%), Positives = 370/542 (68%)
Query: 2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
K F +VE KE DG PSVGPVYR+ A NGFP+ + + WDIF +V+KYP NRML
Sbjct: 5 KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64
Query: 62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
G R +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct: 65 GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124
Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
NA L CVPLYDTLG GAV FI+ HAE+ FV++KK+ EL S + ++ +V F
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184
Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
+ EQKE A + G+ +SWDEFL LG+ + E+ +P +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244
Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
+E+I T +GV FL ++ DVY+S+LPLAH+ DR IEE + G S+G++ GD+
Sbjct: 245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304
Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
L +DL ELKP++ VPRV ++++ G+++ L ++++FD + YK M G
Sbjct: 305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364
Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
ASP D L F KVK LGG +R+++SG APL++ +E FLRV C ++QGYGLTE+C
Sbjct: 365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424
Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
T FPDE+ M+GT GP ++RLE VPEM Y L P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484
Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
DLT+E IDGW HTGD+G+ PNG +KIIDRKKN+ K++QGEYVA+E LENVY +
Sbjct: 485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544
Query: 542 IE 543
IE
Sbjct: 545 IE 546
|
|
| TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1475 (524.3 bits), Expect = 3.7e-151, P = 3.7e-151
Identities = 276/541 (51%), Positives = 376/541 (69%)
Query: 4 FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
+ +VE+GK+G DG PSVGPVYR++ A +GFP DL +AWDIF +SV+K P N MLG
Sbjct: 6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65
Query: 63 WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
R VDGK G YVW+TYKEV+ V+++ +++R G G + GIYGAN P+W+ +MEACN
Sbjct: 66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125
Query: 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
A L CVPLYDTLG GA+ FI+ HAE+ F ++ K+ ELL +S + L+ +V F +
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185
Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
T Q+ A + + YSWD+FL LG+ E+ + ++CTIMYTSGT+GDPKGV+LT+
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245
Query: 243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
E+I + GV L ++++T DVYLS+LPLAHI DRVIEE AS+G++ GD+
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305
Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
L +D+ LKPT+ VPRV E+I+ G+++ L + +++++F+ +KYK M G
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365
Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
+ASP+AD + F+KVK LGG +RL++SG APL+ +E FLRV CA ++QGYGLTE+CG
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425
Query: 423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
T V P+E+ M+GT GP ++RLE VPEMGY L P GE+C+RGKTLFSGYYK
Sbjct: 426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485
Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
DLT+E IDGW HTGD+G+ P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y I
Sbjct: 486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545
Query: 543 E 543
E
Sbjct: 546 E 546
|
|
| TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
Identities = 255/536 (47%), Positives = 347/536 (64%)
Query: 8 VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
VEEG+ PS GPVYR A +G + +D+++ W FS +V+KYP +MLG R
Sbjct: 11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70
Query: 68 DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
D K GPY W TYKE ++ ++I SA+R+ G +PG GIYGANCP+W+ AMEAC + +
Sbjct: 71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130
Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
VPLYD+LG AV FI++HAE+ VFVQ+K V +LS + L+ +V F +++ QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190
Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
E A + +SW+EF +G ++E + + +ICTIMYTSGT+G+PKGV+L + I+
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250
Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
V +D L+ + DV+ S+LPLAH D+V+E YF RG+SVGY+ GD+ L DD
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310
Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
+ LKPT+ GVPRV++K++ GI + + +R+++FD Y YKL M G+ Q EASP
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370
Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
D L F K+K LGGR +++SG APL VEEFLR+ + L QGYGLTE+CG +
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430
Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
MVGT G E RL VPEMGY D P GE+C+RG ++FSGY+K DLT
Sbjct: 431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490
Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
+ +IDGWFHTGDIG+ +G +KIIDRKKN+ K+SQGEYVA+E LEN Y P+I
Sbjct: 491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLI 546
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| TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 216/510 (42%), Positives = 296/510 (58%)
Query: 34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
FP D+ T D F +V + + LG R VDG G Y W TY E + S L
Sbjct: 77 FPD-HPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGL 135
Query: 94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
G G VGIY N P+W+ AC++ S + VPLYDTLGP AV FI++HA + +F
Sbjct: 136 VHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIF 195
Query: 154 VQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
+ + LLS C S +R++V L + +G+K S+ L+ G+ N
Sbjct: 196 CVAETLNSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQ 253
Query: 213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272
PP+P ++ TI YTSGT+G PKGVVLTH + V+G F K DVY+S+
Sbjct: 254 RFFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAG-----SSFSVKFFSSDVYISY 308
Query: 273 LPLAHILDR---VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
LPLAHI +R ++ YF G +VG+Y GD L DDL L+PT+ + VPR++ +I+ G
Sbjct: 309 LPLAHIYERANQILTVYF---GVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAG 365
Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
I A++ L+ R+F+A Y K + G + ASP+ D L F K+K RLGGR+R +
Sbjct: 366 IINAVKTSGGLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMT 422
Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELR 448
SG +PLS EV EFL+V + +GYG+TET C + + D + G G + E++
Sbjct: 423 SGASPLSPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNL--TGHVGSPNPACEVK 480
Query: 449 LEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPN 506
L +VPEM Y+ D P P GE+CVRG +F+GYYK+ T+E I DGW HTGDIG LP
Sbjct: 481 LVDVPEMNYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPG 540
Query: 507 GVVKIIDRKKNLIKISQGEYVALEYLENVY 536
G +KIIDRKKN+ K++QGEY+A E +ENVY
Sbjct: 541 GRLKIIDRKKNIFKLAQGEYIAPEKIENVY 570
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| TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 204/506 (40%), Positives = 288/506 (56%)
Query: 34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
FP ++ T D F +V+ Y N+ LG R DG G Y W TY E E I S L
Sbjct: 77 FPD-HPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGL 135
Query: 94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
G G VG+Y N P+W+ AC A S + VPLYDTLGP AV F+++HA + +F
Sbjct: 136 LFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIF 195
Query: 154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
+ + LLS +R++V + TG+ S+ + L G+ +
Sbjct: 196 CVPQTLNILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHP 254
Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
PP+P +I TI YTSGT+G PKGVVLTH + V+G + + F DVY+S+L
Sbjct: 255 FSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-----DVYISYL 309
Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
PLAHI +R + G +VG+Y GD+ L DD L+PT+ VPR++ +I++GI A
Sbjct: 310 PLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSA 369
Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
++ +++R+F+ Y K + G R S D L F K+K +LGGR+R + SG +
Sbjct: 370 VKSSGVVKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGAS 426
Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
PLS +V +FLR+ + +GYG+TET C + + D + G G + E++L +V
Sbjct: 427 PLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLS--GHVGSPNPACEVKLVDV 484
Query: 453 PEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVK 510
PEM Y+ D P P GE+CVRG +F GYYK+ + TRE + DGW HTGDIG LP G +K
Sbjct: 485 PEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLK 544
Query: 511 IIDRKKNLIKISQGEYVALEYLENVY 536
IIDRKKN+ K++QGEY+A E +ENVY
Sbjct: 545 IIDRKKNIFKLAQGEYIAPEKIENVY 570
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| DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 204/575 (35%), Positives = 318/575 (55%)
Query: 4 FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
+ VE G++ ++G G + RN ++ S D ++ T +D S +KY +
Sbjct: 27 YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82
Query: 62 GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
G R +G G + W +Y E I L G +P +VGI+ N +W+ A
Sbjct: 83 GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
S V Y+TLG +++++ +HAEI F + +++ L + + L+ ++CF
Sbjct: 143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK-VN-EMEILPPQPFNICTIMYTSGTSGDPKGV 238
S+ E +A + G+ Y++DE + GK N + + PP P + TIMYTSGT+G PKGV
Sbjct: 202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261
Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
++TH+ + + V V F+ ++ DV+ S+LP AH+L+RV+ F GA++G +
Sbjct: 262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316
Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
GD++ + ++ L PTL GVPRVFE+I + K + + L R +F+ Y K +
Sbjct: 317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376
Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
G+K + DL+ F K+K LGG++R+++SG APLS + E FLRV C ++QGYG +
Sbjct: 377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436
Query: 419 ETCGPTTVC--FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 476
E CG C DE VGT GP +E++L +VPE+GY + GEVC+RG ++
Sbjct: 437 EGCGGDA-CKRLDDES--VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSIS 493
Query: 477 SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
SGYYK+ + TRE DGWFHTGDIG+ +G + I+DRKKN+ K+SQGEYVA+E +E +
Sbjct: 494 SGYYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIV 553
Query: 537 CVAPIIEDPQV-NVSCSSCAMRRRH-QKVGILEWS 569
+ +E + S SC + H EW+
Sbjct: 554 VKSEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWA 588
|
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| DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
Identities = 193/511 (37%), Positives = 297/511 (58%)
Query: 36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
S D T +D++ + K + LG R + DGK G Y W +YK+ I SAL
Sbjct: 48 SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105
Query: 95 ASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
G G R+GI+ N P+WV + M A N SL+ V LY TLG A+ ++++H+EI +
Sbjct: 106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNH-SLVPVALYATLGANAIEYVVNHSEISVLL 164
Query: 154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLT-AEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
+ K V+++LS ++ +V + L A + +K Y +F LG+ N
Sbjct: 165 CEGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPA 221
Query: 213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-DDVYLS 271
+ P P ++CT++YTSG++G+PKGV+LTH + + V+G + F + +DV++S
Sbjct: 222 QHEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGAN-----FSPAGVIPEDVHMS 276
Query: 272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
+LPLAH +R + G +G++ G + L +D+ L+PT L G PRV++++H+ +
Sbjct: 277 YLPLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLW 336
Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
+ L++ +F+ K + + +G +P+ D L F K K RLGGR++ ++SG
Sbjct: 337 FTVNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSG 392
Query: 392 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
APL ++ EFLR C +V GYGL+E G +V +P++ VG GP E++L +
Sbjct: 393 SAPLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLID 451
Query: 452 VPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 509
VPEM Y D P P GEVC+RG +F GY+K+P+ T+E + DGWFHTGDIG+ NG +
Sbjct: 452 VPEMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTL 511
Query: 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
IIDRKKN+ K+SQGEYVA EYLE+V+ +P
Sbjct: 512 SIIDRKKNIFKLSQGEYVAAEYLESVFVRSP 542
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| UNIPROTKB|F1NNV2 ACSL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 182/517 (35%), Positives = 290/517 (56%)
Query: 28 LLASNGFPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEV 86
LL N S D T ++ F + LG+R PY W TYK+V +
Sbjct: 60 LLTDNNLVSYYFEDSKTLYEAFQRGLHASGNGNCLGYRK----PNQPYQWLTYKQVLDRA 115
Query: 87 LQIVSALRASGAEPGCR--VGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFIL 144
+ S L G +P +GI+ N P+W+ + AC S++ VPLYDTLGP A+ +I+
Sbjct: 116 QHLGSGLLQKGCKPSSDQFIGIFAQNRPEWIISEYACYTYSMVAVPLYDTLGPDAILYIV 175
Query: 145 DHAEIDFVFVQDKKVKELLSPDCRSAQR--LRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202
+ A+I V + ++L +C + L+ ++ E K+ + G++ + E
Sbjct: 176 NKADIGIVICDKPEKAQILLENCEQGKTPCLKTIILMDLFDKELKDRGAKVGVEILALQE 235
Query: 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262
LG+ N + +PP P ++C + +TSGT+G+PKG +LTHE + V+ FL ED
Sbjct: 236 AEELGRNNIRKPVPPGPEDLCIVCFTSGTTGNPKGAMLTHENV---VANAAAFLRTIEDT 292
Query: 263 M--TVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320
+ T DV +S+LPLAH+ +RV++ + GA VG++ GD+ L DD+ LKPT+ VP
Sbjct: 293 VECTTSDVSISYLPLAHMFERVVQTVMYSCGAKVGFFQGDIKLLTDDMKTLKPTIFPVVP 352
Query: 321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKAR 380
R+ +I++ I+ P+++ + + K+ + G + ++ L D L F+KV+
Sbjct: 353 RLLNRIYDKIQSGANT--PMKKFLLNFAATMKMIEVKQGIIRNDS--LLDKLVFKKVQET 408
Query: 381 LGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 440
+GGR+R++++G AP+S V +FLR + + YG TE T P + G GP
Sbjct: 409 MGGRVRIMVTGAAPISPSVLKFLRSALGCQVFEAYGQTECSAGCTFSMPGDWT-TGHVGP 467
Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGD 499
V + ++L++V EM Y ++ GEVC++G +F GY K+P+ T E+I DGW HTGD
Sbjct: 468 PLVCNIIKLDDVEEMNYFSSNNE--GEVCIKGPNVFKGYLKDPEKTAEAIDKDGWLHTGD 525
Query: 500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
+G+ +PNG +KIIDRKKN+ K++QGEY+A E +ENVY
Sbjct: 526 VGKWMPNGTLKIIDRKKNIFKLAQGEYIAPEKIENVY 562
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O22898 | LACS1_ARATH | 6, ., 2, ., 1, ., 3 | 0.7077 | 0.9158 | 0.8242 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.963 |
| 3rd Layer | 6.2.1.3 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00028146001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (669 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00018681001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (691 aa) | • | 0.900 | |||||||
 | GSVIVG00038876001 | SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa) | • | 0.899 | |||||||
 | GSVIVG00033040001 | SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (428 aa) | • | 0.899 | |||||||
 | GSVIVG00009919001 | SubName- Full=Chromosome undetermined scaffold_1671, whole genome shotgun sequence; Flags- Frag [...] (148 aa) | • | 0.899 | |||||||
 | GSVIVG00009515001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (398 aa) | • | 0.899 | |||||||
 | GSVIVG00025319001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa) | • | 0.800 | |||||||
 | GSVIVG00019100001 | SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (338 aa) | • | 0.800 | |||||||
 | GSVIVG00009528001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (256 aa) | • | 0.800 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 594 | |||
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 0.0 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 0.0 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 0.0 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 0.0 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 1e-152 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-128 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-102 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 1e-97 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 3e-93 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 2e-87 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 3e-79 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-75 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 3e-68 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 3e-56 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-55 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 4e-52 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 2e-47 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 4e-44 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 4e-43 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 8e-43 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 1e-41 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 3e-39 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 3e-38 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 3e-37 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 3e-36 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 2e-35 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-32 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 6e-32 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 2e-31 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 2e-31 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 2e-30 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-29 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 2e-26 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 4e-26 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 9e-26 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-25 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 4e-25 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 1e-24 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 4e-23 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 7e-22 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-21 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-21 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 5e-21 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 5e-21 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 1e-20 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 1e-19 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 1e-19 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 1e-19 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 3e-19 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 4e-19 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 4e-19 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 1e-18 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 1e-18 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 2e-18 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 2e-18 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 6e-18 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 9e-18 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 9e-18 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 1e-17 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 2e-17 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 3e-17 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 5e-17 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 5e-17 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 5e-17 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 7e-17 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 7e-17 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-16 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 3e-16 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 3e-16 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 4e-16 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 4e-16 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 7e-16 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 9e-16 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 1e-15 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 2e-15 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 4e-15 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 8e-15 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 2e-14 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 2e-14 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 3e-14 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 7e-14 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 7e-14 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 1e-13 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 2e-13 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 2e-13 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 3e-13 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 5e-13 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 6e-13 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 2e-12 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 3e-12 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 9e-12 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 1e-11 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 1e-11 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 8e-11 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 8e-11 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 9e-11 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 1e-10 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 1e-10 | |
| PTZ00297 | 1452 | PTZ00297, PTZ00297, pantothenate kinase; Provision | 1e-10 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 2e-10 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 3e-10 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 4e-10 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 8e-10 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 9e-10 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 1e-09 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 2e-09 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 3e-09 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 5e-09 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 7e-09 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 7e-09 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 8e-09 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 1e-08 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-08 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 2e-08 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 3e-08 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-08 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 7e-08 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 7e-08 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 8e-08 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 1e-07 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 1e-07 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-07 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 2e-07 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 2e-07 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 2e-07 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 2e-07 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 2e-07 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 3e-07 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 3e-07 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 5e-07 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 7e-07 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 7e-07 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 8e-07 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 8e-07 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 9e-07 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 1e-06 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 2e-06 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 3e-06 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 4e-06 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 5e-06 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 5e-06 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 5e-06 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 5e-06 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 6e-06 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 6e-06 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 7e-06 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 7e-06 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 7e-06 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-05 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 1e-05 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 3e-05 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 3e-05 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 4e-05 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 1e-04 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 1e-04 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 1e-04 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 1e-04 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 2e-04 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 2e-04 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 3e-04 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 3e-04 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 4e-04 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 4e-04 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 4e-04 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 4e-04 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 4e-04 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 4e-04 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 5e-04 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 5e-04 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 5e-04 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 6e-04 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 8e-04 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 0.001 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 0.001 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 0.001 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 0.002 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 0.002 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 0.002 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 0.002 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 0.002 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 0.002 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 0.002 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 0.003 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 0.003 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 0.003 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 0.003 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 0.003 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 0.004 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 0.004 | |
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 0.004 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 0.004 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 1106 bits (2863), Expect = 0.0
Identities = 433/544 (79%), Positives = 486/544 (89%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FAAQVEEG +GKDGKPSVGPVYRNLL+ GFP +DSD+ TAWDIFS SV+KYP N+M
Sbjct: 1 MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR VDGK GPY+WKTYKEVYEEVLQI SALRASGAEPG RVGIYG+NCPQW+ AMEA
Sbjct: 61 LGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C A SLICVPLYDTLGPGAV++I+DHAEIDFVFVQDKK+KELL PDC+SA+RL+ +V FT
Sbjct: 121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
S+T E+ + A Q G+K YSW +FLH+GK N E PP+P +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
THE +ATFV GVDLF++QFEDKMT DDVYLSFLPLAHILDR+IEEYFFR+GASVGYYHGD
Sbjct: 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LNALRDDLMELKPTLLAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYKYKLAWMN GY
Sbjct: 301 LNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
++ASP+AD LAFRKVKA+LGGRLRL+ISGGAPLSTE+EEFLRVT CAF+VQGYGLTET
Sbjct: 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
GPTT+ FPDEMCM+GT G +VY+ELRLEEVPEMGY PL +PP GE+CVRGK LFSGYY
Sbjct: 421 LGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALEYLENVY P
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNP 540
Query: 541 IIED 544
I+ED
Sbjct: 541 IVED 544
|
Length = 660 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 649 bits (1677), Expect = 0.0
Identities = 279/544 (51%), Positives = 368/544 (67%), Gaps = 5/544 (0%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
+ + +VEE + GKPS GPVYR++ A +G + +D+++ W FS +V+KYP N+M
Sbjct: 2 AETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQM 61
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LG R D K GPYVW TYKEVY+ ++I SA+R+ G PG R GIYG+NCP+W+ AMEA
Sbjct: 62 LGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVC 178
CN+ + VPLYDTLG AV FI++HAE+ FVQ+ K+ +LS P C S L+ +V
Sbjct: 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSS--NLKTIVS 179
Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
F +++EQKE A + G+ +SW+EF +G ++ E+ P Q +ICTIMYTSGT+G+PKGV
Sbjct: 180 FGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGV 238
Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
+LT+ I V D L + T +D Y S+LPLAH+ D+VIE Y +GAS+G++
Sbjct: 239 ILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQ 298
Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
GD+ L +D+ LKPT+ GVPRV+++I+ GI + + LR+++FD Y YKL +
Sbjct: 299 GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK 358
Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
G KQ EASP D L F K+K LGGR+RL++SG APL VEEFLRVT C+ L QGYGLT
Sbjct: 359 GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLT 418
Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
E+CG + MVGT G E RLE VPEMGY L D P GE+C+RG TLFSG
Sbjct: 419 ESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSG 478
Query: 479 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538
Y+K DLT E +IDGWFHTGDIG+ PNG +KIIDRKKN+ K+SQGEYVA+E LEN Y
Sbjct: 479 YHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSR 538
Query: 539 APII 542
P+I
Sbjct: 539 CPLI 542
|
Length = 660 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 633 bits (1635), Expect = 0.0
Identities = 284/542 (52%), Positives = 385/542 (71%)
Query: 2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
K F QVEEGKEG DG+PSVGPVYR++ A +GFP+ +++ WD+F MSV+KYP N ML
Sbjct: 5 KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPML 64
Query: 62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
G R VDGK G YVW+TY+EVY+ V+++ ++LR+ G + + GIYGAN P+W+ +MEAC
Sbjct: 65 GRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124
Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
NA L CVPLYDTLG GAV FI+ H+E+ VFV++KK+ EL S + ++ +V F
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184
Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
++ EQKE A G+ Y+WDEFL LG+ + ++ + +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244
Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
+E+I T ++GV L +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304
Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
L +DL ELKPT+ VPRV ++++ G++K L + L++ +FD+ + YK M G
Sbjct: 305 KLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQS 364
Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
EASPL D L F KVK LGG +R+++SG APL++ VE FLRV C ++QGYGLTE+C
Sbjct: 365 HVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424
Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
T V PDE+ M+GT GP ++RLE VPEM Y L P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYK 484
Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
DLT+E +IDGW HTGD+G+ PNG +KIIDRKKN+ K+SQGEYVA+E +EN+Y
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544
Query: 542 IE 543
++
Sbjct: 545 VD 546
|
Length = 666 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 604 bits (1559), Expect = 0.0
Identities = 222/473 (46%), Positives = 296/473 (62%), Gaps = 45/473 (9%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
GPY W +YKEV E L I S LRA G +PG ++GI+ N P+W+ +AC + SL+ VPL
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
YDTLG A+ +IL+ EI VF KV
Sbjct: 61 YDTLGEEAIEYILNETEISIVFCDAVKV-------------------------------- 88
Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
YS++E LGK N++ PP+P ++ TIMYTSGT+G+PKGV+LTH I V+G
Sbjct: 89 ------YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142
Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL 311
++ + +F + DVY+S+LPLAHI +RV+E G +GYY GD L+ D+ EL
Sbjct: 143 INKIVPEF---IGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199
Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
KPT+ GVPRV ++I++GI + L+R +F+ Y YKLA + G ASPL D
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257
Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
L F+K+KA LGGR+RL++SGGAPLS + +EFLRV ++QGYGLTETC T+ P +
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317
Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490
G GP E++L +VPEMGY DDPP GE+C+RG +F GYYKNP+ T E+
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376
Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
DGWFHTGDIG+ LP+G +KIIDRKKNL K+SQGEYVALE LEN+Y +P+++
Sbjct: 377 EDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVD 429
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 452 bits (1164), Expect = e-152
Identities = 213/522 (40%), Positives = 302/522 (57%), Gaps = 23/522 (4%)
Query: 24 VYRNLLAS----NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTY 79
VYR+ + + FP ++ T D F +V+ + + LG R VDG G Y W TY
Sbjct: 23 VYRSARSPLKLVSRFPDHP-EIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTY 81
Query: 80 KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
E I S L G G VG+Y N P+W+ AC+A S + VPLYDTLGP A
Sbjct: 82 GEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDA 141
Query: 140 VNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
V FI++HAE+ +F + + LLS + S +R++V + TG++
Sbjct: 142 VKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPS---VRLIVVVGGADEPLPSLPSGTGVEI 198
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
++ + L G+ + PP+P ++ TI YTSGT+G PKGVVLTH + V+G L
Sbjct: 199 VTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTK 258
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
+ DV++S+LPLAHI +RV + G +VG+Y GD L DDL L+PT+
Sbjct: 259 FY-----PSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFC 313
Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 377
VPR++ +I++GI A++E L+ R+F+A Y K + G + SP+ D L F K+
Sbjct: 314 SVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENG---KNPSPMWDRLVFNKI 370
Query: 378 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVG 436
KA+LGGR+R + SG +PLS +V EFLR+ +++GYG+TET C + + D + G
Sbjct: 371 KAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLS--G 428
Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW 494
G + E++L +VPEM Y+ D P P GE+CVRG +F GYYK+ TRE I DGW
Sbjct: 429 HVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGW 488
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
HTGDIG LP G +KIIDRKKN+ K++QGEY+A E +ENVY
Sbjct: 489 LHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVY 530
|
Length = 651 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 390 bits (1004), Expect = e-128
Identities = 173/487 (35%), Positives = 259/487 (53%), Gaps = 41/487 (8%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
G + TY+E+YE V + S L + G G RV I+ AN P+W A A AL + VP+
Sbjct: 41 GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQD----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
Y T P + +IL+ +E +FV++ V +L DC L V++ E K
Sbjct: 101 YSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLE-DCPKVVDLIVIIDLVREAVEAK 159
Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEM----EILPPQPFNICTIMYTSGTSGDPKGVVLTHE 243
+ + DE + L ++ I PP+P ++ TI+YTSGT+G PKGV+LTH
Sbjct: 160 AL-----VLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHR 214
Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE-EYFFRRGASVGYYHGDLN 302
+ V+G+D L D LSFLPLAHI +R E G +V + D
Sbjct: 215 NLLAQVAGIDEVLPPI----GPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK-EDPR 269
Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM---G 359
L +DL E++PT++ GVPRV+EK+++GI + + + +RR++F K ++ G
Sbjct: 270 TLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLG 329
Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTCCAFLVQGYGLT 418
+AD L FRK++ LGGR+R +SGGAPLS E+ F R + +++GYGLT
Sbjct: 330 GGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIP--ILEGYGLT 387
Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
ET +V PD ++GT G E+++ + GE+ VRG + G
Sbjct: 388 ETSAVVSVNPPDRF-VLGTVGKPLPGIEVKIADD-------------GEILVRGPNVMKG 433
Query: 479 YYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
YYKNP+ T E+ DGWF TGD+G++ +G + I RKK LIK+S G+ +A E +E+
Sbjct: 434 YYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLA 493
Query: 538 VAPIIED 544
+P+IE
Sbjct: 494 KSPLIEQ 500
|
Length = 613 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 316 bits (811), Expect = e-102
Identities = 151/478 (31%), Positives = 218/478 (45%), Gaps = 121/478 (25%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
G + T+ E+ E V ++ + L A G +PG RV I N P+WV A A A + VP+
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
Y T P V +IL+ + VFV+DK PD L ++ +TS T
Sbjct: 61 YPTSSPEEVAYILNDSGARVVFVEDK-------PD-----DLATLI-YTSGT-------- 99
Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
TG +PKGV+LTH + +
Sbjct: 100 -TG---------------------------------------NPKGVMLTHRNLLAQAAA 119
Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHGDLNALRDDLME 310
+ + ++ D LSFLPLAH+ ++ + EY GA V + L +DL E
Sbjct: 120 LLEVIP-----LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARV-NFAESPETLLEDLRE 173
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
++PT+ VPRV+EKI+ GI+ + PL+R++F
Sbjct: 174 VRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRW----------------------- 210
Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVC 427
A GGRLR +SGGAPL EV EF R + +++GYGLTET G TV
Sbjct: 211 --------ALGGGRLRFAVSGGAPLPPEVLEFFRALGIP----ILEGYGLTETSGVATVN 258
Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
P ++ + GT G E+R+ E GE+ VRG + GYYKNP+ T
Sbjct: 259 RPGDIRI-GTVGKPLPGVEVRIAED-------------GEILVRGPNVMKGYYKNPEATA 304
Query: 488 ESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
E++ DGW HTGDIG++ +G + I DRKK+LI + G+ +A + +EN +P I
Sbjct: 305 EALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQ 362
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 312 bits (801), Expect = 1e-97
Identities = 160/483 (33%), Positives = 234/483 (48%), Gaps = 48/483 (9%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E++E ++ L G G V IY +W+ ++ + S++ +Y LG
Sbjct: 123 TYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGE 182
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLS-------PDCRSAQRLRVMVCFTSLTAEQKEMA 190
A+ + L E + K V LL P+ ++ SL A
Sbjct: 183 DALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-------TIIYLDSLPASVDTEG 235
Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIAT 247
+ +W + + G P N + IMYTSGT+GDPKGV+ TH ++
Sbjct: 236 CRL----VAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTA 291
Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD- 306
+ ++ L+ D+ Y S+LPLAHI++ + F RGA +G+ G L D
Sbjct: 292 GILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTDT 349
Query: 307 ------DLMELKPTLLAGVPRVFEKIHEGIKKALEELRP----LRRRIFDALYKYKLAWM 356
DL E +P L GVPR+F+ IKKA+E P L+RR+FD Y+ +L +
Sbjct: 350 FARPHGDLTEFRPVFLIGVPRIFDT----IKKAVEAKLPPVGSLKRRVFDHAYQSRLRAL 405
Query: 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 416
G +P + F +A LGGR+R ++SGG PLS +EF+ V ++QG+G
Sbjct: 406 KEGKD----TPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNV-VFGMVIQGWG 460
Query: 417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTL 475
LTET + ++ G + E++L + E Y D P P GE+ +RG L
Sbjct: 461 LTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFL 517
Query: 476 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
F GYYK +LTRE + DGWFHTGD+G I NG ++II R K L K GEY+ALE LE
Sbjct: 518 FKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEA 577
Query: 535 VYC 537
+Y
Sbjct: 578 LYG 580
|
Length = 700 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 300 bits (771), Expect = 3e-93
Identities = 190/569 (33%), Positives = 284/569 (49%), Gaps = 82/569 (14%)
Query: 41 LNTAWD-------IFSMSVQKYPGNRMLGWRPFV--------DGK------FGPYVWKTY 79
+ T W+ +F S +KY R+LG R + DG+ G Y W TY
Sbjct: 50 VETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITY 109
Query: 80 KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
+V+E V S L A G RV I+ +W+ A++ C ++ V +Y +LG A
Sbjct: 110 GQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEA 169
Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG-IKPY 198
+ L+ E+ V K++K+L+ + RV + + +
Sbjct: 170 LCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRV-IYMDDEGVDSDSSLSGSSNWTVS 228
Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
S+ E LGK N ++ P P +I IMYTSG++G PKGV++TH I V+GV
Sbjct: 229 SFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGV------ 282
Query: 259 FEDKMTV------DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD------ 306
MTV +DVYL++LPLAHIL+ E GA++GY G L D
Sbjct: 283 ----MTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIK 336
Query: 307 -----DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN---M 358
D LKPTL+ VP + +++ +G++K ++ L +++FD YK +LA +
Sbjct: 337 KGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWF 396
Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
G E L D L F+K++A LGGR+R ++SGGAPLS + + F+ + A + QGYGLT
Sbjct: 397 GAWGLEKL-LWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLT 455
Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFS 477
ETC T D+ VG GP ++L E GY D P P GE+ + G ++
Sbjct: 456 ETCAGATFSEWDDTS-VGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTL 514
Query: 478 GYYKNPDLTRESI-IDG----WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL--- 529
GY+KN + T E +D WF+TGDIGQ P+G ++IIDRKK+++K+ GEYV+L
Sbjct: 515 GYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKV 574
Query: 530 -------EYLENV---------YCVAPII 542
Y++N+ YCVA ++
Sbjct: 575 EAALSVSPYVDNIMVHADPFHSYCVALVV 603
|
Length = 696 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 277 bits (710), Expect = 2e-87
Identities = 123/467 (26%), Positives = 190/467 (40%), Gaps = 74/467 (15%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+E+ E ++ +ALRA G PG RV I N P+WV A+ A VPL +L
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ +IL+ +E + D+ + +LL + L +++ G
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD------------DGEGL 108
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
D+ L G E P P ++ I+YTSGT+G PKGV+LTH + +G+
Sbjct: 109 DLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF- 167
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPT 314
+T D L LPL G ++ D L D + + K T
Sbjct: 168 ----GLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVT 223
Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
+L GVP + + + ++ +L
Sbjct: 224 VLYGVPTLLRLLLKAPEEKKYDLS------------------------------------ 247
Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
LRLV+SGG PL E+ LV GYG TET T P +
Sbjct: 248 ---------SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPE 298
Query: 434 M-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
+ G+ G + ++ + E G P+ GE+C+RG + GY +P+LT E +
Sbjct: 299 VKPGSIGR--PLPGVEVKVLDEEG-EPVPPGEVGELCIRGPGVARGYLNDPELTAERFVE 355
Query: 492 DGWF--HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
DGW TGD+G+ +G ++I+ RK + +KI GE + +E V
Sbjct: 356 DGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIR-GERIEPGEIEAVL 401
|
Length = 412 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 3e-79
Identities = 145/495 (29%), Positives = 222/495 (44%), Gaps = 93/495 (18%)
Query: 68 DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
G++ Y T+ +V ++ +I +AL++ G EPG R+ I NC +W+ A A +
Sbjct: 1 GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57
Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPD--CRSAQRLRVMVCFTS 181
VPLY TL + ++L+H++ +FV +K + +
Sbjct: 58 SVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDH-- 115
Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF--NICTIMYTSGTSGDPKGVV 239
Y WD+ L E P P ++ TI+YTSGT+G PKGV+
Sbjct: 116 ----------------YKWDDLL---AATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVM 156
Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEY-FFRRGASVGYYH 298
L+ A G + +T +D LS+LPLAHI +RVI E GA V ++
Sbjct: 157 LSFGAFAFAAQGTIEII-----GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEV-FFV 210
Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGI-----KKALEELRPLRRRIFDALYKYKL 353
L+ DL +PT+ VPR++ K +GI + L L L+ I +L K
Sbjct: 211 ESLDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLL--LKIPILSSLVK--- 265
Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLR---VTCCA 409
+K+ LG + RL SG AP+ + + R +
Sbjct: 266 ---------------------KKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLP--- 301
Query: 410 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 469
+ +GYG+TE +T+ +P + +GT G EL++ E GE+
Sbjct: 302 -ICEGYGMTENFAYSTLNYPGDR-RIGTVGKPIPGVELKISED-------------GEIL 346
Query: 470 VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
+R L SGYYK+P+ T E+ DGW HTGD G+I +G +KI R K L K S+G+YVA
Sbjct: 347 IRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVA 406
Query: 529 LEYLENVYCVAPIIE 543
+EN+ P +E
Sbjct: 407 PAPIENLLSANPHVE 421
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 249 bits (638), Expect = 1e-75
Identities = 128/467 (27%), Positives = 192/467 (41%), Gaps = 73/467 (15%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+E+ ++ +AL+A G +PG RV I N P+++ A A + VPL L P
Sbjct: 40 TYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTP 99
Query: 138 GAVNFILDHAEIDFVFVQD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
+ +IL+ A + + E ++ + ++
Sbjct: 100 RELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVG-------------DADDR 146
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
P + + G + + P P ++ ++YTSGT+G PKGVVLTH + ++
Sbjct: 147 LPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNL---LANAAGI 203
Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
+T DDV LS+LPL HI G VG L A L
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIF-----------GLIVG-----LLAP----------L 237
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM----NMGYKQREASPLADL 371
L G V L + + KYK+ + + L D
Sbjct: 238 LGGGTLVL----------LSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRE------LLDN 281
Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430
L LRLV+SGGAPL E+ E F +++GYGLTET T+ PD
Sbjct: 282 PEKDDDD--LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD 339
Query: 431 EMC-MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
++ G+ G E+R+ V G L GE+ VRG + GY+ P+ T E+
Sbjct: 340 DLLAKPGSVGRPLPGVEVRI--VDPDGGEVLPGEV-GEIWVRGPNVMKGYWNRPEATAEA 396
Query: 490 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
DGW TGD+G + +G + I+ R K+LI GE + E +E V
Sbjct: 397 FDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISG-GENIYPEEIEAV 442
|
Length = 534 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 3e-68
Identities = 144/475 (30%), Positives = 218/475 (45%), Gaps = 54/475 (11%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPLYDTLG 136
TYK+ YE Q A G E VGI G N P+W A+ A A I V +Y T
Sbjct: 10 TYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGG-IAVGIYTTNS 68
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
P A ++ + +E + + V + K + + L+ ++ + ++KE
Sbjct: 69 PEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQY-REPLKEKE------PN 121
Query: 197 PYSWDEFLHLGK----VNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
YSW EF+ LG+ I+ Q P CT++YTSGT+G PKGV+L+H+ I
Sbjct: 122 LYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKA 181
Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG--YYHGDLNALRDDLM 309
+D + +S+LPL+HI ++++ + SVG Y +AL+ L+
Sbjct: 182 AVKHMDLRTVG---QESVVSYLPLSHIAAQILDIWL---PISVGGCVYFAQPDALKGTLV 235
Query: 310 ----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF----DALYKYKLAWMNMGYK 361
E++PT GVPRV+EKI E +K + L+R+I + L M
Sbjct: 236 KTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESP 295
Query: 362 QREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLRVTCCAFL------VQG 414
LA L F+KV+ LG R + +G AP+S E EF FL ++
Sbjct: 296 PPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEF-------FLSLNIPIMEL 348
Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
YG++ET GP TV P + + G E ++ G GE+C+ G+
Sbjct: 349 YGMSETSGPHTVSNPQNY-RLLSCGKALPGCETKIHNPDADGI--------GEICIWGRH 399
Query: 475 LFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
+F GY + T E+I DGW H+GD+G + +G + I R K LI + GE V
Sbjct: 400 VFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVP 454
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 3e-56
Identities = 125/489 (25%), Positives = 185/489 (37%), Gaps = 125/489 (25%)
Query: 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
D+ + +++P L F K TY E+ E + + L+ G + G RV
Sbjct: 3 DLLERAARRFPDRPAL---TFFGRKL------TYAELDELSDRFAAYLQQLGVKKGDRVA 53
Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
+ NCPQ+ A + VP VN + E++ D K
Sbjct: 54 LMLPNCPQFPIAYFGILKAGAVVVP---------VNPLYTPRELEHQL-NDSGAK----- 98
Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
V++ S A+ +G + P ++ +
Sbjct: 99 ---------VLIVAISFED-----ALASGAPLP--------------LPVELSPDDLAVL 130
Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
YT GT+G PKG +LTH + V+ V +D +D +L+ LPL HI
Sbjct: 131 QYTGGTTGVPKGAMLTHRNL---VANVQQIAAWVKDLREGEDRFLTALPLFHI------- 180
Query: 286 YFFRRGASVGYYHGDLNAL----RD-DLMEL----KPTLLAGVPRVFEKIHEGIKKALEE 336
+ +G G N L R ++++ + T+ GVP
Sbjct: 181 FGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVP---------------- 224
Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
LY LL + K LRL ISGGAPL
Sbjct: 225 ----------TLYNA-------------------LLNHPEFKKYDFSSLRLCISGGAPLP 255
Query: 397 TEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEVP 453
EV E F T LV+GYGLTET TTV D G+ G P+ ++ +E
Sbjct: 256 VEVAERFEEKTGAP-LVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGN 314
Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513
E+ P + GE+ VRG + GY+ P+ T E + DGW TGDIG + +G I+D
Sbjct: 315 EL---PPGEV--GELVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVD 369
Query: 514 RKKNLIKIS 522
RKK++I +
Sbjct: 370 RKKDMIIVG 378
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 1e-55
Identities = 131/501 (26%), Positives = 190/501 (37%), Gaps = 121/501 (24%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E V ++ +ALRA G + G RV ++ N +++EA A + + P+ L P
Sbjct: 33 TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ +IL+ AE V V + V L +A ++ T + A +
Sbjct: 93 EEIAYILNDAEDRVVLVDSEFVPLL------AAILPQLPTVRTVIVEGDGPAA-PLAPEV 145
Query: 198 YSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
++E L + + ++YTSGT+G PKGVVL+H
Sbjct: 146 GEYEELL----AAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSH---RNLFLHSLA 198
Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGY---YHG---------DL 301
K++ DDVYL +P+ H+ A + Y G D
Sbjct: 199 VCAWL--KLSRDDVYLVIVPMFHV------------HAWGLPYLALMAGAKQVIPRRFDP 244
Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
L D + + T VP + M K
Sbjct: 245 ENLLDLIETERVTFFFAVPTI---------------------------------WQMLLK 271
Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTET 420
A D LRLVI GGA L + EF VQGYG+TET
Sbjct: 272 APRAYF-VDF-----------SSLRLVIYGGAALPPALLREFKEKFGIDL-VQGYGMTET 318
Query: 421 CGPTTVCFPDE--------MCMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGE 467
+V P++ G P V E R+ +E+P G GE
Sbjct: 319 SPVVSVLPPEDQLPGQWTKRRSAGRPLP-GV--EARIVDDDGDELPPDGGEV------GE 369
Query: 468 VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
+ VRG L GY+ P+ T E+I GW HTGD+G I +G + I DR K++I IS GE +
Sbjct: 370 IIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVI-ISGGENI 428
Query: 528 -ALEYLENVYCVAPIIEDPQV 547
E LE+ + P V
Sbjct: 429 YPRE-LEDA-----LYGHPAV 443
|
Length = 521 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 4e-52
Identities = 120/360 (33%), Positives = 184/360 (51%), Gaps = 16/360 (4%)
Query: 187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
KE A + GI +D+ K +I P I +I+YTSGTSG PKGV+L+++ +
Sbjct: 272 KEKAKKLGISIILFDDMTK-NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLY 330
Query: 247 TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
V V L K +LS+LP++HI +RVI F G ++ + D+N
Sbjct: 331 NTV--VPLCKHSIFKKYNPKT-HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387
Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
D+ K +LAGVP+VF +I+ I + L PL+R + + + + N G+ +
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKF--- 444
Query: 367 PLADLLAF-RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 425
L + K+K ++ L ++++GG LS ++ E L V QGYGLTET GP
Sbjct: 445 -LEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF 503
Query: 426 VCFPDEMCMVGTAGPVS--VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP 483
V D+ GP+S ++R E Y D P GE+ ++ ++FSGY+
Sbjct: 504 VQHADDNNTESIGGPISPNTKYKVRTWET----YKATDTLPKGELLIKSDSIFSGYFLEK 559
Query: 484 DLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
+ T+ + DG+F TGDI QI NG + +DR K L+K+SQGEY+ + L N+Y I
Sbjct: 560 EQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFI 619
|
Length = 746 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 2e-47
Identities = 119/481 (24%), Positives = 190/481 (39%), Gaps = 84/481 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
T+ ++ ++ L++ LR G + G V + N ++ C A I + P
Sbjct: 12 TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTP 71
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ L ++ +F D + + + + ++ S A ++
Sbjct: 72 DELAHQLKISKPKLIFC-DPDELDKVKEAAKELGPVVRIIVLDS--------APDGVLRI 122
Query: 198 YSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
E E E P + ++Y+SGT+G PKGV+L+H+ I ++ +
Sbjct: 123 EDLLEPRLGA---EDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNI---IANLS 176
Query: 254 LFLDQF-EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELK 312
D + + +DV L+FLP H +
Sbjct: 177 QVQDTLKGNPDSSNDVVLTFLPFYHA-------------YGLTTTLA------------- 210
Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY-----KYKLAWMNMGYKQREASP 367
+LL G + + + KYK+ + + P
Sbjct: 211 -SLLCGATVIIM-----------------PKFDSETFLKLIEKYKVTSLFL------VPP 246
Query: 368 LADLLAFRKV--KARLGGRLRLVISGGAPLSTEVEEFLRV-TCCAFLVQGYGLTETCGPT 424
+A LA + K L LR++ SG APLS E++E LR + QGYG+TET T
Sbjct: 247 IAVALAKSPLVDKYDLSS-LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPAT 305
Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
T+ P + G+ G + E ++ V E G L GE+CV+G + GY NP+
Sbjct: 306 TLTPPGD-EKPGSVGRLVPNVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPE 362
Query: 485 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
T+E+I DGW HTGDIG +G I+DRKK LIK +G V LE V P +
Sbjct: 363 ATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKY-KGYQVPPAELEAVLLEHPKVA 421
Query: 544 D 544
D
Sbjct: 422 D 422
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 4e-44
Identities = 119/462 (25%), Positives = 179/462 (38%), Gaps = 95/462 (20%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ V + +AL A G G RV I+ N P WV A + VPL
Sbjct: 32 TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTA 91
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+IL + +FV L D + RL + E+ K
Sbjct: 92 DEAAYILARGDAKALFVLG----LFLGVDYSATTRLPALEHVVICETEE---DDPHTEKM 144
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
++ +FL G E P ++ I++TSGT+G PKG +LTH + + + +L
Sbjct: 145 KTFTDFLAAGDPAERA-PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF---------FRRGASVGYYHGDLNALRDDL 308
+T D YL+ P H+ F RGA++ + D++
Sbjct: 204 -----LTEGDRYLAANPFFHV--------FGYKAGVNAPLMRGATI-LPLPVFDP--DEV 247
Query: 309 MEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
L + T+L G P +Y L + R
Sbjct: 248 FRLIETERITVLPGPP--------------------------TMYNSLLQ-----HPDRS 276
Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGA----PLSTEVEEFLRVTCCAFLVQGYGLTET 420
A L+ L RL ++G A L E L V ++ GYGL+E
Sbjct: 277 AEDLSSL--------------RLAVTGAASMPVALLERFESELGV---DIVLTGYGLSEA 319
Query: 421 CGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
G TT D+ + GT G E ++ V E+G + GE+ VRG + G
Sbjct: 320 SGVTTFNRLDDDRKTVAGTIGTAIAGVENKI--VNELG-EEVPVGEVGELLVRGPNVMKG 376
Query: 479 YYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLI 519
YY +P+ T +I DGW HTGD+G++ G + I+DRKK++
Sbjct: 377 YYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMF 418
|
Length = 513 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 4e-43
Identities = 97/320 (30%), Positives = 138/320 (43%), Gaps = 60/320 (18%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
+ I+YTSGT+G PKGVVL+H ++ T DV LS LPL H++
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSH---RNLLANAQALAQAIGL--TEGDVLLSVLPLFHVVG 55
Query: 281 RVIEEYF-FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
G +V Y G L + + + + T+L GVP +++ +
Sbjct: 56 GGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL----------A 105
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
+ R Y L+ LRL+ISGG PLS
Sbjct: 106 KAAEDR------GYDLS-----------------------------SLRLLISGGEPLSP 130
Query: 398 EV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
E+ E F +++GYGLTET T+ E+ GT G E+R+ V E G
Sbjct: 131 ELLERFEERPGAP-ILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV--VDEEG 187
Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
PL GE+ VRG + GY+ NP T + DGW+ TGD+G + G + I R
Sbjct: 188 -KPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRS 246
Query: 516 KNLIKISQGEYVALEYLENV 535
K+LIK+ GE V +E+V
Sbjct: 247 KDLIKVG-GENVYPAEVESV 265
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 8e-43
Identities = 123/468 (26%), Positives = 184/468 (39%), Gaps = 123/468 (26%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ + ++ +AL G PG V N ++V AC + + P+
Sbjct: 3 TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRE 62
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ FIL A R RV+ P
Sbjct: 63 RELGFILRQA------------------------RARVLFV------------------P 80
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFL 256
+ F + P ++ ++YTSGT+G+PKGV+ TH T+ A S V+
Sbjct: 81 DEFRGFDYAA----------MPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL- 129
Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
+T DDV L PLAHI G+ +G +EL LL
Sbjct: 130 -----GLTPDDVVLMPSPLAHI---------------TGFLYG---------LEL--PLL 158
Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFR 375
G V + P R + + ++ + + MG A+P LADLLA
Sbjct: 159 LGATVVL----------QDRWDP--ARALELIREHGVTFT-MG-----ATPFLADLLAAA 200
Query: 376 KVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EM 432
LR+ + GGAP+ E +V+ YG+TE TV PD +
Sbjct: 201 DAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAK-VVRAYGMTE-VPLVTVGTPDDPDD 258
Query: 433 CMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
T G E+R+ +VP P ++ GE+ VRG LF GY PD T
Sbjct: 259 KRAATDGRPVPGVEVRIVDDDGNDVP-----PGEE---GELQVRGPQLFLGYLDPPDNTE 310
Query: 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
DGWF TGD+G++ +G ++I RKK++I I GE ++ +E++
Sbjct: 311 AFTDDGWFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDL 357
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 1e-41
Identities = 121/497 (24%), Positives = 190/497 (38%), Gaps = 114/497 (22%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
G TY + Y V ++ +AL + G +PG RV N + +E A + + L
Sbjct: 21 GSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTL 80
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
L P + +I++HAE +FV D LL A RL + +M
Sbjct: 81 NPRLSPEQIAYIINHAEDKVIFV-DDDFLPLLE---AIAPRLPTVKAVVVYDDA--DMPE 134
Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFN-ICTIMYTSGTSGDPKGVVLTHETIA--TF 248
+ Y+++E L + + P N + YTSGT+G+PKGVV +H ++ T
Sbjct: 135 TSLPNVYAYEELL--EEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTL 192
Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY----------- 297
S + L ++ D L +P+ H+ + Y
Sbjct: 193 ASALPDSLG-----LSESDTVLPVVPMFHVN-----------AWGLPYAATMVGAKLVLP 236
Query: 298 --HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
+ D +L D + E K T+ AGVP + W
Sbjct: 237 GRYLDPASLLDLIEEEKVTVSAGVPTI--------------------------------W 264
Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQ 413
+ + L L R+V+ G A + +E+ V ++
Sbjct: 265 LGL------------LNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERGVE----VIH 308
Query: 414 GYGLTETCGPTTVCFPDEMCMVG-----------TAGPVSVYSELRL-----EEVPEMGY 457
+G+TET TV +V G ELR+ E+P G
Sbjct: 309 AWGMTETSPLGTVSRLKPH-LVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNELPWDGK 367
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
+ GE+ VRG + YYK+P+ T E DGWF TGD+ I +G ++I DR K+
Sbjct: 368 TV------GELVVRGPWVTGSYYKDPEKTEELTRDGWFRTGDVAVIDEDGYIQITDRAKD 421
Query: 518 LIKISQGEYVALEYLEN 534
+IK S GE+++ LEN
Sbjct: 422 VIK-SGGEWISSVELEN 437
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 3e-39
Identities = 104/346 (30%), Positives = 150/346 (43%), Gaps = 70/346 (20%)
Query: 216 PPQPF----NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
PP ++ + Y+SGT+G KGV+LTH ++ V + +DV L
Sbjct: 150 PPVVVIKQDDVAALPYSSGTTGRSKGVMLTH---RNLIANVAQLVAGEGPNFDREDVTLC 206
Query: 272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
LP+ HI +G L + L+ L T++ +PR F+
Sbjct: 207 VLPMFHI-------------------YG-LTVILLALLRLGATVVV-MPR-FD------- 237
Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR-----LR 386
LE+ A+ KYK+ + P+ + VK + + L+
Sbjct: 238 --LEKF-------LAAIEKYKVTHL----------PVVPPIVLALVKHPIVDKYDLSSLK 278
Query: 387 LVISGGAPLSTEVEE-FLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVY 444
+ SG APL E+ E F L QGYG+TE+ TT+C E G+ G +
Sbjct: 279 QIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPN 338
Query: 445 SELRLEEVPEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIG 501
E ++ + PE G S PP GE+ VRG + GY NP+ T E+I DGW HTGD+G
Sbjct: 339 VEAKIVD-PETGES---LPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLG 394
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
+G + I+DR K LIK G VA LE + P I D V
Sbjct: 395 YFDEDGYLFIVDRLKELIKYK-GFQVAPAELEALLLSHPEIADAAV 439
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 3e-38
Identities = 91/342 (26%), Positives = 129/342 (37%), Gaps = 81/342 (23%)
Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
+ L P TI++TSG++G PK VV T G L +T DD +L
Sbjct: 69 LADLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENL-----GLTPDDNWLL 123
Query: 272 FLPLAH-----ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
LPL H I+ R GA V D A+ + L T ++ VP
Sbjct: 124 SLPLFHVSGLAIVMRS----LLAGGALVLPDKFDAEAIAEALENHGVTHISLVP------ 173
Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
+R+ + A L+ LR
Sbjct: 174 ------------TQLQRLLE---------------SLGARWLS--------------SLR 192
Query: 387 LVISGGAPLSTEVEEFLRVTCCAF---LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVS 442
V+ GGAP+ L L YG+TET T+ D + +G+ G
Sbjct: 193 AVLLGGAPIPPS----LLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPL 248
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQ 502
ELR+ + GE+ VRG +LF GY LT DGWFHTGD+G
Sbjct: 249 PGRELRIVNPQD-----------GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGY 297
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
+ G + ++ R+ +LI IS GE + E +E V P +E+
Sbjct: 298 LDAEGYLYVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEE 338
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 3e-37
Identities = 84/331 (25%), Positives = 129/331 (38%), Gaps = 86/331 (25%)
Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
I YTSGT+G PKG +LTH + + +T D L +PL H+
Sbjct: 4 PALIQYTSGTTGRPKGAMLTHRNVLNNGYSI-----ARRLGLTEGDRTLVPVPLFHV--- 55
Query: 282 VIEEYF---------FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGI 330
F GA++ + + + T L GVP +F
Sbjct: 56 -----FGLVLGVLASLTAGATL-VLMEKFDPGAALRLIERERITALHGVPTMF------- 102
Query: 331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-ADLLAFRKVKARLGGRLRLVI 389
+ L FD L G +P+ +L+ R+++
Sbjct: 103 ---IALLEHPDFDKFDL---SSLRTGISG-----GAPVPPELV--RRIREEFP------- 142
Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSEL 447
A + GYG+TET G T D+ GT G E+
Sbjct: 143 ------------------MAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEV 184
Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPN 506
++ + P+ G P + GE+CVRG ++ GYY +P+ T E+I DGW HTGD+G + +
Sbjct: 185 KIVD-PDGGEVPPGEV--GEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDED 241
Query: 507 GVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
G ++I+ R K++I I G EN+Y
Sbjct: 242 GYLRIVGRIKDMI-IRGG--------ENIYP 263
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 3e-36
Identities = 127/485 (26%), Positives = 177/485 (36%), Gaps = 149/485 (30%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ ++ AL A G PG RV + ++V A + VPL +
Sbjct: 13 TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
AE+ + + D + L+ P ++ +TS
Sbjct: 73 ---------AELAY-ILSDSQPSLLVDP---------ALIIYTS---------------- 97
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
GT+G PKGVVLTH +A + ++
Sbjct: 98 --------------------------------GTTGRPKGVVLTHGNLA---ANARALVE 122
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
+ + T DV L LPL H+ HG NAL L A
Sbjct: 123 AW--RWTASDVLLHALPLHHV-------------------HGLFNALH-------CPLWA 154
Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN-----MG----YKQREASPL 368
G F L R FD + L + MG Y + L
Sbjct: 155 GASVEF----------------LPR--FDPQERDALRLLPRITVFMGVPTIYTR-----L 191
Query: 369 ADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVC 427
+ F A LRL +SG A L V E + T L++ YG+TET G
Sbjct: 192 LEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERT-GHTLLERYGMTET-GMALSN 249
Query: 428 FPDEMCMVGTAG-PV-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
D GT G P+ V E+R+ V E G PL GE+ VRG +FS Y+ P+
Sbjct: 250 PLDGERRPGTVGLPLPGV--EVRI--VDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEA 305
Query: 486 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY--VALEYLENVYCVAPII 542
T E+ DGWF TGD+G + +G +I+ RK + I I G Y ALE +E ++
Sbjct: 306 TAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDI-IKSGGYKVSALE-IEEA-----LL 358
Query: 543 EDPQV 547
E P V
Sbjct: 359 EHPGV 363
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-35
Identities = 93/331 (28%), Positives = 137/331 (41%), Gaps = 92/331 (27%)
Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
I+YTSGT+G PKGV+LTH + +D ++ DVYL PL
Sbjct: 3 PALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVD-----LSPGDVYLLAAPL------ 51
Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
YH L P L AG V + + P
Sbjct: 52 ---------------YHAAGGLF------LLPALAAGGTVVL----------MPKFDP-- 78
Query: 342 RRIFDALYKYKL-------AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
+ D + ++++ L L F + LRL+I G AP
Sbjct: 79 EAVLDLIERHRVTHTFLVPTMFQR---------LLRLPDFARYD---LSSLRLIIYGAAP 126
Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRL--- 449
+ E++ + VQGYG+TET GPTT E + +G+ G E+R+
Sbjct: 127 MPAELKRAMIEWFGPVFVQGYGMTET-GPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDE 185
Query: 450 --EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505
E+P E+G E+ VRG + +GY+ P+ T E++ DGW HTGD+G +
Sbjct: 186 DGRELPPGEVG----------EIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLGYLDE 235
Query: 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
+G + I+DRKK++I IS G EN+Y
Sbjct: 236 DGYLYIVDRKKDMI-ISGG--------ENIY 257
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-32
Identities = 114/451 (25%), Positives = 167/451 (37%), Gaps = 120/451 (26%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E V ++ L+ G G RV +Y N PQ+V A A + VP+
Sbjct: 3 TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ IL+ + RV++ + L
Sbjct: 63 AELEHILNDSG------------------------ARVLIVGSEL--------------- 83
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFL 256
+++ ++P YTSGT+G PKG + TH T +AT +
Sbjct: 84 ------------DDVAVIP----------YTSGTTGLPKGCMHTHRTVLATAAASAAWSG 121
Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
+T D V L+FLPL H+ G +NA +
Sbjct: 122 ------LTPDSVLLAFLPLFHV---------------AGMQGS-MNA----------PIY 149
Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFR 375
G V R R A+ +Y++ W N+ + + DLLA
Sbjct: 150 TGATLVLLT------------RWDREAAARAIERYRVTHWTNI------VTMVVDLLAHP 191
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
+ L++V GGA L V E L+ +GYGLTET T PD
Sbjct: 192 RFADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQ 251
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---- 491
PV ++ R+ + PE G L GE+ VRG +F GY+ P+ T ES I
Sbjct: 252 CLGIPVF-GTDARVID-PETG-EELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDG 308
Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
+F TGD+G I G +DR K +I +S
Sbjct: 309 KRFFRTGDLGYIDEEGYFFFLDRVKRMINVS 339
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 6e-32
Identities = 103/518 (19%), Positives = 176/518 (33%), Gaps = 97/518 (18%)
Query: 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
LN A + ++ + F TY ++ EV ++ +AL+ G
Sbjct: 8 LNLALNALDRHLEADRPDDTAII--FDGEDGLFREL-TYGDLRREVARLANALKDLGGVK 64
Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
G RV IY N P+ V A+ A + I + L AV + + D
Sbjct: 65 GDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADD---- 120
Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
+ + + + V +DE + E +P
Sbjct: 121 -------GTFRNGKEIA-LLEDADAVLSSVVVVPRLGLWYDEAVE----KASEKFEFEPL 168
Query: 221 N---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
++YTSGT+G PKG+V +H + D + +
Sbjct: 169 PADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLT--AKFHGDLLP--GDRFWNSSDPGW 224
Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
I G ++ + L +G V ++G E
Sbjct: 225 I---------------YGLWYSVFSPL-----------ASGATTVL---YDGRPFYSPE- 254
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLGGRLRLVISGGAPL 395
R+++AL KYK+ SP L L+ + LR++ S G PL
Sbjct: 255 -----RLWEALEKYKVT-------IFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPL 302
Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
+ E E F +++ YG TET P G++G +P
Sbjct: 303 NPEAFEWFYSALGV-WILDIYGQTETGMGFIAGRPP--VKNGSSG------------LPL 347
Query: 455 MGYSP--LDD--PPC----GEVCVRGKT--LFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504
GY+ +DD P GE+ VR + Y+ +P+ +E+ W+ TGD +
Sbjct: 348 PGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERD 407
Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
+G + R ++IK+S G+ + +E+V P +
Sbjct: 408 EDGYFWLHGRSDDVIKVS-GKRIGPLEIESVLLAHPAV 444
|
Length = 528 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-31
Identities = 103/476 (21%), Positives = 167/476 (35%), Gaps = 115/476 (24%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
T++++ E + AL+A G G RV + G N + V + AC L L L
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
L+ ++ + ++ D S R+ + +T +
Sbjct: 61 NERTNQLEDLDVQLLLTDSLLEEKDFQAD--SLDRI------------EAAGRYETSLSA 106
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
+ I T+M+TSGT+G PK V T G L
Sbjct: 107 SFNMD------------------QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL- 147
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR---RGASVGYYHGDLNALRDDLMELKPT 314
T DD +L LPL HI I FR GA++ N L + + + T
Sbjct: 148 ----GFTEDDNWLLSLPLYHISGLSI---LFRWLIEGATL-RIVDKFNQLLEMIANERVT 199
Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
++ VP +L +
Sbjct: 200 HISLVPT------------------------------QLNRL------------------ 211
Query: 375 RKVKARLGG-RLRLVISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVC-FP 429
+ LR ++ GG+ + + E + + YG+TETC + V
Sbjct: 212 --LDEGGHNENLRKILLGGSAIPAPLIEEAQQYGLP----IYLSYGMTETC--SQVTTAT 263
Query: 430 DEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
EM G E++++ + G+ GE+ V+G L GY +LT
Sbjct: 264 PEMLHARPDVGRPLAGREIKIKVDNKEGH--------GEIMVKGANLMKGYLYQGELTPA 315
Query: 489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
GWF+TGDIG++ G + ++ R+ +LI IS GE + E +E V P I++
Sbjct: 316 FEQQGWFNTGDIGELDGEGFLYVLGRRDDLI-ISGGENIYPEEIETVLYQHPGIQE 370
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-31
Identities = 120/457 (26%), Positives = 184/457 (40%), Gaps = 92/457 (20%)
Query: 78 TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
TYK+++E V ++ + L + G R+ I N +++ + A + I VPL L
Sbjct: 29 TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLT 88
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
+ F L + +FV+ LS S ++ ++ TSL + E
Sbjct: 89 ENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY--VQRVISITSLK--EIEDRKIDNFV 144
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
+ F IC YTSGT+G PKG VLT E + F + ++
Sbjct: 145 EKNESA----------------SFIIC---YTSGTTGKPKGAVLTQENM--FWNALN--- 180
Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
+ F +T+ D + LPL HI G + L PTL
Sbjct: 181 NTFAIDLTMHDRSIVLLPLFHI--------------------GGIG-----LFAF-PTLF 214
Query: 317 AG----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
AG VPR FE KAL + + + + A +N +
Sbjct: 215 AGGVIIVPRKFEP-----TKALSMIEKHKVTVVMGVPTIHQALIN--------CSKFETT 261
Query: 373 AFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLV-QGYGLTETCGPTTVCFPD 430
+ V R +GGAP E + EF+ FL QG+G+TET PT +
Sbjct: 262 NLQSV--------RWFYNGGAPCPEELMREFIDR---GFLFGQGFGMTET-SPTVFMLSE 309
Query: 431 EMCM--VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
E VG+ G ++ + L + + + GE+ +RG + Y+ PD T E
Sbjct: 310 EDARRKVGSIGKPVLFCDYELID-ENKNKVEVGE--VGELLIRGPNVMKEYWNRPDATEE 366
Query: 489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 525
+I DGW TGD+ ++ +G V I+ RKK +I IS GE
Sbjct: 367 TIQDGWLCTGDLARVDEDGFVYIVGRKKEMI-ISGGE 402
|
Length = 496 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-30
Identities = 149/552 (26%), Positives = 224/552 (40%), Gaps = 117/552 (21%)
Query: 35 PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR 94
+D T D++ +V ++ RP +D FG TY E+ ++V + + LR
Sbjct: 25 HDLDYGDTTLVDLYDNAVARFGD------RPALD-FFGATT--TYAELGKQVRRAAAGLR 75
Query: 95 ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT---LGPGAVNFILDH-A 147
A G PG RV I NCPQ + A A L + V PLY P DH A
Sbjct: 76 ALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFE-----DHGA 130
Query: 148 EIDFVF----------VQDKKVKELLSPDCRSA----QRLRVMVCFTSLTAEQKEMAVQT 193
+ V+ + ++ ++S + +A QRL + + +L + + T
Sbjct: 131 RVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAAL---T 187
Query: 194 GIKP--YSWDEFLHLGKVNEMEILP---PQPFNICTIMYTSGTSGDPKGVVLTHETI-AT 247
G P W+ + + + P P ++ I+YTSGT+G PKG LTH + A
Sbjct: 188 GPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247
Query: 248 FVSG---VDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLN 302
G V D + L+ LP+ H L + G V D++
Sbjct: 248 AAQGKAWVPGLGDG-------PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDID 300
Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
+ D + + PT L GVP ++EKI + A E L
Sbjct: 301 LILDAMKKHPPTWLPGVPPLYEKI---AEAAEERGVDLSG-------------------- 337
Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETC 421
+R SG L VE + ++T LV+GYGLTET
Sbjct: 338 ----------------------VRNAFSGAMALPVSTVELWEKLTG-GLLVEGYGLTET- 373
Query: 422 GPTTVCFPDEMCMVGT---AGPVSV---YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
P V P + G V V +E+R+ + PE + D GE+ VRG +
Sbjct: 374 SPIIVGNP-----MSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQV 427
Query: 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
F GY+ P+ T +S +DGWF TGD+ + +G ++I+DR K LI I+ G V +E V
Sbjct: 428 FKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELI-ITGGFNVYPAEVEEV 486
Query: 536 YCVAPIIEDPQV 547
P +ED V
Sbjct: 487 LREHPGVEDAAV 498
|
Length = 573 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-29
Identities = 89/341 (26%), Positives = 125/341 (36%), Gaps = 89/341 (26%)
Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
I+YTSGT+G PKGV+LTH A + L + DDV L+ LPL HI
Sbjct: 83 TAAILYTSGTTGPPKGVLLTH---AQLLFAARLAARLLG--LRPDDVLLTPLPLFHI--- 134
Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
NA + LL G V L
Sbjct: 135 --------------------NAQ---AYSVYAALLVGATLVL----------LPRFSA-- 159
Query: 342 RRIFDALYKYKLAW-------MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
R +D + K+ + KQ + D LR V P
Sbjct: 160 SRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRD------------HPLRFVFGAPLP 207
Query: 395 LSTEVEEFLRVTCCAF---LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-- 449
+ F F LV+GYG+TET P P + G+ G E+R+
Sbjct: 208 -AAIWPAFEE----RFGVKLVEGYGMTETGVPIIA--PGDPAPPGSCGRPRPGVEVRIVD 260
Query: 450 ---EEVPEMGYSPLDDPPCGEVCVR---GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
EVP GE+ VR +F GYY P+ T ++ +GWFHTGD G+
Sbjct: 261 EDGREVP-------PGEV-GELVVRPRRPWAMFKGYYGMPEATAKAWRNGWFHTGDRGRR 312
Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
+G + +DRKK+ I+ GE ++ +E P + +
Sbjct: 313 DEDGFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAE 352
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-26
Identities = 128/495 (25%), Positives = 193/495 (38%), Gaps = 111/495 (22%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
T++E+ + V + AL G G RV I N ++VE++ A N L I VP+ L P
Sbjct: 44 TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ F++ V + ++ R L V +++
Sbjct: 104 PEIAFLVSDCGAHVVVTEA--ALAPVATAVRDIVPLLSTVVVAGGSSD------------ 149
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI-----CTIMYTSGTSGDPKGVVLTHETIAT----- 247
D L + P +I IMYTSGT+G PKG VLTH +
Sbjct: 150 ---DSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTC 206
Query: 248 -FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
+G D DV +PL HI A +G
Sbjct: 207 LRTNGAD----------INSDVGFVGVPLFHI-------------AGIG----------- 232
Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
+ P LL G P V I+ L P ++ D L K+ + + Q +A
Sbjct: 233 ---SMLPGLLLGAPTV---IY-----PLGAFDP--GQLLDVLEAEKVTGIFLVPAQWQA- 278
Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF----LVQGYGLTETCG 422
+ A ++ + R LR++ G AP S + LR F ++ +G TE
Sbjct: 279 ----VCAEQQARPR-DLALRVLSWGAAPASDTL---LRQMAATFPEAQILAAFGQTEM-S 329
Query: 423 PTTVCF---PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRG 472
P T C D + +G+ G V +P + +D+ P GE+ R
Sbjct: 330 PVT-CMLLGEDAIRKLGSVGKV----------IPTVAARVVDENMNDVPVGEVGEIVYRA 378
Query: 473 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 532
TL SGY+ NP+ T E+ GWFH+GD+ + G V ++DRKK++I IS GE + +
Sbjct: 379 PTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEV 437
Query: 533 ENVYCVAPIIEDPQV 547
ENV P I + V
Sbjct: 438 ENVLASHPDIVEVAV 452
|
Length = 542 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 4e-26
Identities = 110/477 (23%), Positives = 165/477 (34%), Gaps = 126/477 (26%)
Query: 78 TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
TY+E+ E ++ LRA+ G PG RV + + V A+ A VPL D
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPL-DPAY 59
Query: 137 PGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
P + FIL+ A + L L + +L
Sbjct: 60 PAERLAFILEDAGARLLLTDSALASRL--AGLVLPVILLDPLELAALDDAPAPPPPDA-- 115
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
P P ++ ++YTSG++G PKGVV+TH ++ ++ +
Sbjct: 116 --------------------PSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARR 155
Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
+ DD L F L+ D ASV E+ L
Sbjct: 156 YG-----LDPDDRVLQFASLSF--D-----------ASV--------------EEIFGAL 183
Query: 316 LAG-----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LA 369
LAG P +E R + + ++ + +N +P L
Sbjct: 184 LAGATLVVPPE-------------DEERDDAALLAALIAEHPVTVLN-------LTPSLL 223
Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428
LLA A LRLVI GG L+ V+ + A L+ YG TET T
Sbjct: 224 ALLAAALPPALAS--LRLVILGGEALTPALVDRWRARGPGARLINLYGPTET---TVWS- 277
Query: 429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---------------GEVCVRGK 473
TA V R VP +G PL + GE+ + G
Sbjct: 278 --------TATLVDPDDAPRESPVP-IGR-PLANTRLYVLDDDLRPVPVGVVGELYIGGP 327
Query: 474 TLFSGYYKNPDLTRESIIDGWF---------HTGDIGQILPNGVVKIIDRKKNLIKI 521
+ GY P+LT E + F TGD+ + LP+G ++ + R + +KI
Sbjct: 328 GVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI 384
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 9e-26
Identities = 88/326 (26%), Positives = 129/326 (39%), Gaps = 81/326 (24%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
I++TSGT+G PKGV LTH+ + + K+T D L+ +PL HI
Sbjct: 7 ILHTSGTTGRPKGVPLTHKNLLASARNI-----AKSHKLTPSDRCLNVMPLFHI------ 55
Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG----VPRVFEKIHEGIKKALEELRPL 340
HG + +L TLLAG P F
Sbjct: 56 -------------HGLIVSLL-------ATLLAGGSVVCPPKFSA--------------- 80
Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLG-GRLRLVISGGAPLST 397
+ +D + KY++ W + A P LL K RLR + S APL
Sbjct: 81 -SKFWDDIAKYRVTWYS-------AVPTIHQILLKTAKPNPGKPPPRLRFIRSASAPLPP 132
Query: 398 EV----EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRLEE 451
V E+ V +++ YG+TE P + G+ G + E
Sbjct: 133 AVLDRLEKRFGVP----VLEAYGMTEAAHQIA-SNPLPPLVRKPGSVGRPAG------VE 181
Query: 452 VPEMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509
V + PL GE+ +RG + +GY NP+ RE+ DGWF TGD+G + +G +
Sbjct: 182 VAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGYLDEDGYL 241
Query: 510 KIIDRKKNLIKISQGEYVALEYLENV 535
+ R K LI GE ++ +E V
Sbjct: 242 FLTGRIKELINRG-GEKISPREVEEV 266
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 131/513 (25%), Positives = 192/513 (37%), Gaps = 110/513 (21%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
T++++ + V ++ L A G +PG RVGI+ NC +W+ A + I V +
Sbjct: 47 TWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRA 106
Query: 138 GAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQ----------RLRVMVCF 179
+ + L + + +V D ++ELL P Q LR +V
Sbjct: 107 SELEYALGQSGVRWVICADAFKTSDYHAMLQELL-PGLAEGQPGALACERLPELRGVVSL 165
Query: 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--------PPQPFNICTIMYTSGT 231
A W E G+ E L P NI YTSGT
Sbjct: 166 AP--APPPGFLA--------WHELQARGETVSREALAERQASLDRDDPINI---QYTSGT 212
Query: 232 SGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-F 288
+G PKG L+H I + L L + D++ V +PL H V+
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGLTE-HDRLCVP------VPLYHCFGMVLANLGCM 265
Query: 289 RRGASVGY--YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346
GA + Y D A + E + T L GVP +F + EL +R FD
Sbjct: 266 TVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF----------IAELDHPQRGNFD 315
Query: 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT 406
LR I GAP EV RV
Sbjct: 316 L-----------------------------------SSLRTGIMAGAPCPIEVMR--RVM 338
Query: 407 C---CAFLVQGYGLTETCGPTTVCFPDEMC--MVGTAGPVSVYSELRLEEVPEMGYSPLD 461
A + YG+TET + + V T G + E+++ + P+ P
Sbjct: 339 DEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVPRG 397
Query: 462 DPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
+ GE+C RG ++ GY+ NP+ T ESI DGW HTGD+ + G V+I+ R K++I
Sbjct: 398 E--IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI- 454
Query: 521 ISQGEYVALEYLENVYCVAPIIEDPQV-NVSCS 552
I GE + +E P + D QV V
Sbjct: 455 IRGGENIYPREIEEFLFTHPAVADVQVFGVPDE 487
|
Length = 558 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 4e-25
Identities = 111/346 (32%), Positives = 151/346 (43%), Gaps = 91/346 (26%)
Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VD-----LFLDQFEDKMTVDDVYLSFLPLAHI-- 278
Y+SGT+G PKGV+LTH+ + T V+ VD L+ DDV L LP+ HI
Sbjct: 186 YSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY-------FHSDDVILCVLPMFHIYS 238
Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFE--KIHEGIKKALEE 336
L+ V+ L LR + +L + FE + E I++
Sbjct: 239 LNSVL-----------------LCGLR-----VGAAIL--IMPKFEIGALLELIQRHKVT 274
Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLA---DLLAFRKVKARLGGRLRLVISGGA 393
+ P I A+ K SP+ DL + R V SG A
Sbjct: 275 IAPFVPPIVLAIAK---------------SPVVEKYDLSSIRMVL-----------SGAA 308
Query: 394 PLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMV----------GTAGPVS 442
PL E+E+ R A L QGYG+TE GP MC+ G+ G V
Sbjct: 309 PLGKELEDAFRAKLPNAVLGQGYGMTEA-GPVL-----AMCLAFAKEPFPVKSGSCGTVV 362
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
+EL++ + PE G S L GE+C+RG + GY +P+ T +I DGW HTGDIG
Sbjct: 363 RNAELKIVD-PETGAS-LPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIG 420
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
I + + I+DR K LIK +G VA LE + P I D V
Sbjct: 421 YIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAV 465
|
Length = 537 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-24
Identities = 122/511 (23%), Positives = 197/511 (38%), Gaps = 107/511 (20%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
G +++Y E+ EE +I++ LRA G +PG V + +V A AC + VP+
Sbjct: 35 GSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMA 190
+ E + + + + ELL SP + L + A + +
Sbjct: 95 ----AVPPT-----YDEPNAAVAKLRNIWELLGSPVILTDAALVAALAGLRTRAGLEALR 145
Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
V + S L P +P + ++ TSG++G PK VVLTH I
Sbjct: 146 VLAIEELRSAPPDAPL--------HPARPDDPALLLLTSGSTGVPKCVVLTHRNI----- 192
Query: 251 GVDLFLDQFEDKMTV-----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
L + + V DDV L+++PL H+ + H LR
Sbjct: 193 -----LARSAGTVQVNGFTPDDVSLNWMPLDHV-------------GGIVMLH-----LR 229
Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA--WM-NMGYKQ 362
D V ++IH L + PLR D + +Y++ W N +
Sbjct: 230 D------------VYLGCQQIHVPTDYILAD--PLR--WLDLIDRYRVTITWAPNFAFAL 273
Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTC-----CAFLVQGYG 416
L D L + ++ LR +I+ G + + FL + + +G
Sbjct: 274 -----LNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFG 328
Query: 417 LTETCGPTTVC--FPDEMCMVGTA-----GPVSVYSELRLEEVP--EMGY---------- 457
++ETC T F G GP+ + E V E+G
Sbjct: 329 MSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIV 388
Query: 458 ----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKII 512
+ L + G + VRG T+ SGYY+NP+ E+ DGWF TGD+G + +G + I
Sbjct: 389 DEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL-HDGRLTIT 447
Query: 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
R+K++I I+ Y E +E P +E
Sbjct: 448 GREKDMIIINGVNYYNHE-IEAAVEQVPGVE 477
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-23
Identities = 72/214 (33%), Positives = 103/214 (48%), Gaps = 38/214 (17%)
Query: 343 RIFDALYKYKLAWMNMGYKQREASP-----LADLLAFRKVKARLGGRLRLVISGGAPLST 397
I+D + K+K+ + +P LA+ A K L +R V++ GAP
Sbjct: 246 AIYDLIEKHKVTHLC-------GAPTVLNMLAN--APEADKLPLPRPVR-VMTAGAPPPP 295
Query: 398 EVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELR------- 448
V ++ F + YGLTET GP TVC E A P + L+
Sbjct: 296 AV--IKKMEELGFEVTHVYGLTETYGPITVCEWKPEW----DALPAEERARLKARQGVRY 349
Query: 449 --LEEV----PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
LEEV PE P D GE+ +RG T+ GYYKNP+ T E+ GWFH+GD+
Sbjct: 350 VGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLA 409
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
+ P+G ++I DR K++I IS GE ++ +E V
Sbjct: 410 VVHPDGYIEIKDRSKDII-ISGGENISSIEVEGV 442
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 7e-22
Identities = 100/327 (30%), Positives = 126/327 (38%), Gaps = 81/327 (24%)
Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276
P P I+YTSGT+G PKGVVL+ IA +D + ++ T DDV + LPL
Sbjct: 125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAA---DLDALAEAWQ--WTADDVLVHGLPLF 179
Query: 277 HILDRVIEEY-FFRRGASV---------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
H+ V+ R G Y + TL GVP V+ +I
Sbjct: 180 HVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQA---------LSEGGTLYFGVPTVWSRI 230
Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
E R LR ARL
Sbjct: 231 AA----DPEAARALRG------------------------------------ARL----- 245
Query: 387 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 446
LV SG A L V + L V+ YG+TET T D G G E
Sbjct: 246 LV-SGSAALPVPVFDRLAALTGHRPVERYGMTETL-ITLSTRADGERRPGWVGLPLAGVE 303
Query: 447 LRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504
RL V E G P D GE+ VRG TLF GY PD T + DGWF TGD+ +
Sbjct: 304 TRL--VDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVD 361
Query: 505 PNGVVKIIDRKK-NLIK-----ISQGE 525
P+G+ +I+ R+ +LIK I GE
Sbjct: 362 PDGMHRIVGRESTDLIKSGGYRIGAGE 388
|
Length = 471 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 2e-21
Identities = 92/313 (29%), Positives = 139/313 (44%), Gaps = 54/313 (17%)
Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD--VYLSFL 273
P ++ + YT GT+G KG L H I V ++ +L +K D ++ L
Sbjct: 200 KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCAL 259
Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
PL HI + +G G N +L PR I
Sbjct: 260 PLYHIFALTV-------CGLLGMRTGGRN------------ILIPNPR-------DIPGF 293
Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
++EL+ + IF A+ A +N +P D L F K+ GG G A
Sbjct: 294 IKELKKYQVHIFPAVNTLYNALLN--------NPDFDKLDFSKLIVANGG-------GMA 338
Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-PV-SVYSELRLE 450
E +L +T C + +GYGL+ET P C P D GT G P+ S +R +
Sbjct: 339 VQRPVAERWLEMTGCP-ITEGYGLSET-SPVATCNPVDATEFSGTIGLPLPSTEVSIRDD 396
Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 509
+ ++ PL +P GE+C+RG + +GY+ PD T + + DG+F TGD+G + G
Sbjct: 397 DGNDL---PLGEP--GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYT 451
Query: 510 KIIDRKKNLIKIS 522
KI+DRKK++I +S
Sbjct: 452 KIVDRKKDMILVS 464
|
Length = 557 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 2e-21
Identities = 125/467 (26%), Positives = 189/467 (40%), Gaps = 79/467 (16%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYD- 133
T+ +++V + + L+ G E G RV I NCPQ V I V PLY
Sbjct: 51 TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110
Query: 134 -----TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS------L 182
L IL +D VF + V+ + R+ + F +
Sbjct: 111 RELEYQLHDSGAKVILC---LDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV 167
Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-----LPPQPFN-ICTIMYTSGTSGDPK 236
+Q + V+ S E +HL E E+ +P P N + + YT GT+G PK
Sbjct: 168 QKKQSNLVVKV-----SESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPK 222
Query: 237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY 296
GV+LTH+ + VS + + + ++V L LP H+
Sbjct: 223 GVMLTHKNL---VSNTLMGVQWLYNCKEGEEVVLGVLPFFHV------------------ 261
Query: 297 YHGDLNALRDDLMELKPTLLAGVPRV-FEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
+G + +M+ +L +P+ + + E IKK L P I+ AL
Sbjct: 262 -YGMTAVMNLSIMQGYKMVL--IPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLN----- 313
Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGY 415
SPL +K +R ISG APL EV+E LV+GY
Sbjct: 314 ----------SPL--------LKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGY 355
Query: 416 GLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
GLTE+ T F E + G+ G +E + + E G L GE+ V+G +
Sbjct: 356 GLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL-ETG-EALPPGEIGEIVVKGPQI 413
Query: 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
GY+ P+ T + DGW HTGD+G + +G + DRKK++I S
Sbjct: 414 MKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVAS 460
|
Length = 563 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 5e-21
Identities = 98/329 (29%), Positives = 145/329 (44%), Gaps = 58/329 (17%)
Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
PQ ++ + YT GT+G KG +LTH +A + L + ++ ++ LPL
Sbjct: 204 PQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC---EILIAPLPL 260
Query: 276 AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 335
HI Y F G+ N L + PR + ++
Sbjct: 261 YHI-------YAFTFHCMAMMLIGNHNILISN------------PRDLPAM-------VK 294
Query: 336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
EL + F L +A N EA FRK+ L+L +SGG L
Sbjct: 295 ELGKWKFSGFVGLNTLFVALCN-----NEA--------FRKLDF---SALKLTLSGGMAL 338
Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEV 452
E + VT CA +GYG+TET P P + VGT G PV S ++ ++
Sbjct: 339 QLATAERWKEVTGCAIC-EGYGMTET-SPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDG 396
Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511
E+ PL + GE+CV+G + GY++ P+ T E + DGW TGDI I +G ++I
Sbjct: 397 NEL---PLGEV--GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRI 451
Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAP 540
+DRKK++I +S G V LE+V P
Sbjct: 452 VDRKKDMILVS-GFNVYPNELEDVLAALP 479
|
Length = 562 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 5e-21
Identities = 100/337 (29%), Positives = 147/337 (43%), Gaps = 67/337 (19%)
Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY--LSFLPLA 276
P ++ + YT GT+G PKG +LTH + + VS D++ + T DV + LPL
Sbjct: 191 PDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVW--GKPSRATRGDVERVICVLPLF 248
Query: 277 HILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
HI VI RRG + + D+ A+ D+ E + T+ GVP ++ AL
Sbjct: 249 HIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMW--------IAL 300
Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
L +R +L A +G SGGAP
Sbjct: 301 ANDPSLEKRDLSSL------------------------------ATIG-------SGGAP 323
Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
L EV F L G+G+TETC P T P+ G P S+ L L + E
Sbjct: 324 LPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPE-----GPDKPGSI--GLMLPGI-E 375
Query: 455 MGYSPLDDP----PCGEVC---VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 507
+ LDDP P GEV +RG + GY+ P+ + E+ + F TGDIG + +G
Sbjct: 376 LDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDG 435
Query: 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
++DRKK++I IS G V + +E P +++
Sbjct: 436 YFFLVDRKKDMI-ISGGFNVYPQMIEQAIYEHPGVQE 471
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-20
Identities = 123/473 (26%), Positives = 187/473 (39%), Gaps = 84/473 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+E+ V ++ L G G V N ++ AC+ + + PL
Sbjct: 57 TYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRE 116
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
++F+L HAE V V K + A+RLR + + V G
Sbjct: 117 RELSFMLKHAESK-VLVVPKTFRGFDHA--AMARRLR------PELPALRHVVVVGGDGA 167
Query: 198 YSWDEFLHLGKVNEME-----ILP---PQPFNICTIMYTSGTSGDPKGVVLTHET----I 245
S++ L + E E IL P P ++ ++YTSGT+G+PKGV+ T T I
Sbjct: 168 DSFEALL-ITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANI 226
Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
+ + L DDV L P+AH G+ +G
Sbjct: 227 VPYAERLGL---------GADDVILMASPMAHQ---------------TGFMYG------ 256
Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA 365
+ + P +L G V + I + +A E +R + + M +
Sbjct: 257 ---LMM-PVML-GATAVLQDIWD-PARAAELIRTEG-----------VTFT-MA-----S 293
Query: 366 SP-LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT 424
+P L DL K R LR + GAP+ + E R A +V +G+TE T
Sbjct: 294 TPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVT 353
Query: 425 TVCF--PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
PDE T G E+R V + +PL G + VRG + F GY K
Sbjct: 354 LTKLDDPDER-ASTTDGCPLPGVEVR---VVDADGAPLPAGQIGRLQVRGCSNFGGYLKR 409
Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
P L DGWF TGD+ +I +G ++I R K++I I GE + + +E +
Sbjct: 410 PQLNGTDA-DGWFDTGDLARIDADGYIRISGRSKDVI-IRGGENIPVVEIEAL 460
|
Length = 547 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 1e-19
Identities = 97/341 (28%), Positives = 145/341 (42%), Gaps = 73/341 (21%)
Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
+ + L G+ ++ +P +I + YT GT+G KG +LTH + + V L Q
Sbjct: 186 PFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245
Query: 259 F-EDKMTV----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
D + +V ++ LPL HI Y F G+ N L +
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHI-------YAFTANCMCMMVSGNHNVLITN------ 292
Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM-GYKQREASPLADLL 372
PR I ++EL R L +A M+ G+K + S
Sbjct: 293 ------PR-------DIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFS------ 333
Query: 373 AFRKVKARLGGRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-D 430
L+L SGG L E + ++T C +V+GYGLTET P P
Sbjct: 334 -----------ALKLTNSGGTALVKATAERWEQLTGCT-IVEGYGLTET-SPVASTNPYG 380
Query: 431 EMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPC-------GEVCVRGKTLFSGYYKN 482
E+ +GT G PV P +DD GE+C++G + GY++
Sbjct: 381 ELARLGTVGIPV-----------PGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQ 429
Query: 483 PDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
P+ T E++ +GWF TGDI I P+G V+I+DRKK+LI +S
Sbjct: 430 PEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVS 470
|
Length = 562 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 1e-19
Identities = 88/340 (25%), Positives = 136/340 (40%), Gaps = 91/340 (26%)
Query: 225 IMYTSGTSGDPKGVVLTHETI----ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
+++TSGT G PKGV+LTH I + + ++L T DV++ PL H
Sbjct: 192 VLFTSGTEGLPKGVMLTHNNILASERAYCARLNL---------TWQDVFMMPAPLGH--- 239
Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
+ G+ HG + L G V I L L
Sbjct: 240 ------------ATGFLHG-----------VTAPFLIGARSVLLDIFTP-DACLALLE-- 273
Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP-LADLL-AFRKVKARLGGRLRLVISGGAPLSTE 398
+ + M +G A+P + DLL K A L LR + GG + +
Sbjct: 274 ---------QQRCTCM-LG-----ATPFIYDLLNLLEKQPADLSA-LRFFLCGGTTIPKK 317
Query: 399 VEEFLRVTCC----AFLVQGYGLTETCGPTTVCFPDEMC--MVGTAG------PVSVYSE 446
V C L+ YG TE+ P V D+ + T G + V E
Sbjct: 318 V-----ARECQQRGIKLLSVYGSTESS-PHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDE 371
Query: 447 LRLEEVPEMGYSPLDDPPC-GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL 504
R + +P P C GE RG +F GY P+LT ++ +GW+++GD+ ++
Sbjct: 372 AR-KTLP---------PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMD 421
Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
G +KI RKK++I + GE ++ +E++ P I D
Sbjct: 422 EAGYIKITGRKKDII-VRGGENISSREVEDILLQHPKIHD 460
|
Length = 547 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 1e-19
Identities = 49/128 (38%), Positives = 62/128 (48%), Gaps = 24/128 (18%)
Query: 415 YGLTETCGPTTVC--------FPDE-----MCMVGTAGP----VSVYSELRLEEVPEMGY 457
YGLTET GP TVC P + G P V+V ++ VP
Sbjct: 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPA--- 383
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
D GE+ RG + GY KNP T E+ GWFHTGD+ + P+G +KI DR K+
Sbjct: 384 ---DGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKD 440
Query: 518 LIKISQGE 525
+I IS GE
Sbjct: 441 II-ISGGE 447
|
Length = 545 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 3e-19
Identities = 121/500 (24%), Positives = 182/500 (36%), Gaps = 94/500 (18%)
Query: 59 RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118
RP + FG W TY E AL A+G + G RV + N ++++
Sbjct: 32 ERYPDRPLL--VFGGTRW-TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVF 88
Query: 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 178
C L I VP+ L + IL ++ + V+ + L + D V
Sbjct: 89 LGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVW-- 146
Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP---QPFNICTIMYTSGTSGDP 235
L ++V G +S L P QP + I+YTSGT+G
Sbjct: 147 ---LLDAPASVSVPAG---WSTAPLPPLD-----APAPAAAVQPGDTAAILYTSGTTGPS 195
Query: 236 KGVVLTHETIATFV-----SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 290
KGV H A F S DL + DDV + LPL H
Sbjct: 196 KGVCCPH---AQFYWWGRNSAEDLEI-------GADDVLYTTLPLFHT------------ 233
Query: 291 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350
NAL LLAG V E R + A+ +
Sbjct: 234 -----------NALN----AFFQALLAGATYVLEP------------RFSASGFWPAVRR 266
Query: 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 410
+ + Y + LL+ ++ R+R+ + G P + F R
Sbjct: 267 HG---ATVTYLLGAMVSI--LLSQPARESDRAHRVRVALGPGVP-AALHAAF-RERFGVD 319
Query: 411 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 470
L+ GYG TET V + G+ G ++ E R+ V E L D GE+ +
Sbjct: 320 LLDGYGSTETNFVIAVTHGSQ--RPGSMGRLAPGFEARV--VDEHD-QELPDGEPGELLL 374
Query: 471 RGKTLF---SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
R F +GY+ P+ T E+ + WFHTGD +G + +DR K+ I+ +GE +
Sbjct: 375 RADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENI 433
Query: 528 ALEYLENVYCVAPIIEDPQV 547
+ +E V ++ P V
Sbjct: 434 SSFEVEQV-----LLSHPAV 448
|
Length = 542 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 4e-19
Identities = 76/314 (24%), Positives = 120/314 (38%), Gaps = 73/314 (23%)
Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--- 278
+ +T GT+G PK +H L + DV L+ LPL H+
Sbjct: 4 LAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSG-----LGPGDVLLNGLPLFHVGGA 58
Query: 279 LDRVIEEYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHE 328
+ + RGA+V G+ + A+ + ++ + TLL+ VP V
Sbjct: 59 IVTGLAP--LARGATVVLPTPSGFRN---PAVVANFWKIVERYRVTLLSAVPTV------ 107
Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
LA LL A + LR
Sbjct: 108 ---------------------------------------LAALLQVPLGDADIS-SLRYA 127
Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL 447
++G APL EV F VT +V+GYG+TE G + + G+ G Y+ +
Sbjct: 128 LTGAAPLPVEVARRFEAVTGVP-VVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRV 186
Query: 448 RLEEVPEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505
R+ ++ G D P G + +RG +F GY + + DGW +TGD+G+I
Sbjct: 187 RVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLEDGWLNTGDLGRIDA 246
Query: 506 NGVVKIIDRKKNLI 519
+G + + R K+LI
Sbjct: 247 DGYLWLTGRAKDLI 260
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 4e-19
Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 35/242 (14%)
Query: 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
T DI S ++YP L FG W TY E+ V ++ +AL G + G
Sbjct: 11 QTIGDILRRSARRYPDKTAL--------VFGDRSW-TYAELDAAVNRVAAALLDLGLKKG 61
Query: 102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE 161
RV G N + AC + VP+ L + +ILDH+ V
Sbjct: 62 DRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA---- 117
Query: 162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF- 220
L+P +A L + + + P W +F + + P
Sbjct: 118 -LAPTAEAALALLPVDTLIL------SLVLGGREAPGGWLDFADWAEAGSVA--EPDVEL 168
Query: 221 ---NICTIMYTSGTSGDPKGVVLTHET-IATFVSG-VDLFLDQFEDKMTVDDVYLSFLPL 275
++ I+YTSGT PKG +LTH IA +VS V M+ DD+ L LPL
Sbjct: 169 ADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-------DMSADDIPLHALPL 221
Query: 276 AH 277
H
Sbjct: 222 YH 223
|
Length = 523 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-18
Identities = 109/476 (22%), Positives = 179/476 (37%), Gaps = 81/476 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ EEV + +ALR G E RV + + P++ A + + VP+ L P
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ L+ + + + +++ E+L P + LR ++ A
Sbjct: 92 DDYRYYLNDSRARVLVI-SEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYA------- 143
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
+ + E+E ++ +Y+SG++G PKGVV H + + +
Sbjct: 144 ----QLIA-TAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTA---EAYAK 195
Query: 258 QFEDKMTVDDVYLSF--LPLAHILDRVIEEYF-FRRGASVGYYHGDLNALR--DDLMELK 312
+T DDV S L A+ L + YF GA+ + K
Sbjct: 196 NVL-GITEDDVVFSAAKLFFAYGLGNGL--YFPLSVGATTVLMPERPTPDAVFATIERYK 252
Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
PT+ GVP LY A +L
Sbjct: 253 PTVFFGVP--------------------------TLY-------------------AAML 267
Query: 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432
A + R LRL +S G L E+ + ++ G G TE P
Sbjct: 268 AAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGA- 326
Query: 433 CMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 491
GT+G PV Y E++L V E G + D GE+ VRG + +GY+ + TRE+ +
Sbjct: 327 VKYGTSGKPVPGY-EVKL--VDEDG-EEVADGEIGELWVRGDSSAAGYWNRREKTRETFV 382
Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
W TGD +G R +++K+S G +V+ +E+ +++ P V
Sbjct: 383 GEWTRTGDKYYRDEDGYYWYCGRSDDMLKVS-GIWVSPFEVEDA-----LLQHPAV 432
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 1e-18
Identities = 96/456 (21%), Positives = 155/456 (33%), Gaps = 97/456 (21%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ ++ L + G PG V I + V A+ A VPL D L P
Sbjct: 254 TYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPL-DPLYP 312
Query: 138 GA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
+ +IL+ + + Q L D L A+ +
Sbjct: 313 AERLAYILEDSRPTLLLTQ-----AHLRVDDVGLPGL----------------ALDDALS 351
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
+ + + + + I+YTSG++G PKGV + H +A ++
Sbjct: 352 EIPDTDPIPQALLGD---------ALAYIIYTSGSTGQPKGVRIEHRALANLLNDAG--- 399
Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR--GASV----GYYHGDLNALRDDLME 310
+F + DD L+ L+ D + E F GA + D AL + L
Sbjct: 400 ARFG--LDADDRVLALASLS--FDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEA 455
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
T+L VP + + L
Sbjct: 456 QGITVLLLVP---------------------------------LLLRL---------LLL 473
Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGPTTVCF 428
+ + RLR ++SGG L + + L L+ YG TE T+
Sbjct: 474 AALAPDLISPCE-RLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEA----TLDA 528
Query: 429 PDEMCMVGTAGPVSVYSELRLEEVPEM--GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486
P V + + ++ + G PL GE+ + G L GY PDLT
Sbjct: 529 PSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLT 588
Query: 487 RES-IIDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 521
E I + TGD+ + L +G ++ + RK + +KI
Sbjct: 589 AERFIALRLYRTGDLARPLADGALEYLGRKDSQVKI 624
|
Length = 642 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-18
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 17/203 (8%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+E Y+ ++ SAL G G V + N P +EA + VPL L
Sbjct: 31 TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ---RLRVMVCFTSLTAEQKEMAVQTG 194
+ FIL+H+E +FV D++ L + + S AE E
Sbjct: 91 DDIAFILNHSEAKVLFV-DQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEE----- 144
Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
+++ L G + + I P ++ ++ YTSGT+G+PKGVV TH +++ +
Sbjct: 145 ---GDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHR--GAYLNALGN 199
Query: 255 FLDQFEDKMTVDDVYLSFLPLAH 277
+ E M VYL LP+ H
Sbjct: 200 VI---EWGMPDRPVYLWTLPMFH 219
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 2e-18
Identities = 75/326 (23%), Positives = 129/326 (39%), Gaps = 71/326 (21%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
I++TSG++G PKGV ++H +A+F+ + D +T DV+ + P
Sbjct: 102 ILFTSGSTGKPKGVQISHANLASFLDWMVEDFD-----LTEGDVFSNQAPF--------- 147
Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
F DL+ + +L P L +G +P+ E I L
Sbjct: 148 -SF------------DLS-----VFDLFPALASGATLYVIPK------EQIADPLA---- 179
Query: 340 LRRRIFDALYKYKLA-WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
+F+ L ++ L W+++ S + LL R++ LR + G L +
Sbjct: 180 ----LFEFLKEHGLTVWVSV------PSFASLLLLSRELNPESLPSLRTFLFCGEVLPKK 229
Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTT-VCFPDEMCMVGTAGPV---SVYSELRLEEVP 453
+ R A ++ YG TE T E + P+ LR +
Sbjct: 230 LAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEP--LSRNEPLPIGYPKPGLRALILD 287
Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTGDIGQILPNGVV 509
E G P+ GE+ + G + GY NP+ T ++ W+ TGD+ + +G++
Sbjct: 288 EDG-RPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLL 346
Query: 510 KIIDRKKNLIKISQGEYVALEYLENV 535
+ RK IK+ G + LE +E
Sbjct: 347 VYLGRKDFQIKL-HGYRIELEEIEAA 371
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 6e-18
Identities = 93/347 (26%), Positives = 143/347 (41%), Gaps = 61/347 (17%)
Query: 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED 261
E L LG+ + M L +P +I + YT GT+G KG +LTH + + +L
Sbjct: 190 EALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK 249
Query: 262 KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR 321
+V ++ LPL HI F + G N L + PR
Sbjct: 250 LEEGCEVVITALPLYHIFALTANGLVFMK-------IGGCNHLISN------------PR 290
Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
+ ++EL+ R F + N + +P D + F +K L
Sbjct: 291 -------DMPGFVKELKKTRFTAFTGV--------NTLFNGLLNTPGFDQIDFSSLKMTL 335
Query: 382 GGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV 441
GG G A + E + +VT LV+ YGLTET P P + + G +
Sbjct: 336 GG-------GMAVQRSVAERWKQVTGLT-LVEAYGLTET-SPAACINP--LTLKEYNGSI 384
Query: 442 SVYSELRLEEVPEMGYSPLDDP-------PCGEVCVRGKTLFSGYYKNPDLTRESI-IDG 493
+ +P DD GE+C++G + GY+K P+ T + + DG
Sbjct: 385 GL-------PIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADG 437
Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
W HTGDI ++ G V I+DRKK++I +S G V +E+V + P
Sbjct: 438 WLHTGDIARMDEQGFVYIVDRKKDMILVS-GFNVYPNEIEDVIAMMP 483
|
Length = 560 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 9e-18
Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-P 440
L+L + GG + V E ++++T +L++GYGLTE C P P D G+ G P
Sbjct: 326 SLKLSVGGGMAVQQAVAERWVKLTGQ-YLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGLP 383
Query: 441 V-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGD 499
V S +L ++ E+ P +P GE+ V+G + GY++ P+ T E I DGW TGD
Sbjct: 384 VPSTEIKLVDDDGNEV---PPGEP--GELWVKGPQVMLGYWQRPEATDEVIKDGWLATGD 438
Query: 500 IGQILPNGVVKIIDRKKNLIKIS 522
I + G ++I+DRKK++I +S
Sbjct: 439 IAVMDEEGFLRIVDRKKDMILVS 461
|
Length = 560 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 9e-18
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 26/164 (15%)
Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTA 438
LR++ GGAPLS E+ + L Q +G+ E G V + P ++ M T
Sbjct: 256 SLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAE--G--LVNYTRLDDPPDVIM-RTQ 310
Query: 439 G-PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
G P+S E+R+ E VP GE+ RG GYY+ P+ +
Sbjct: 311 GRPISPADEIRIVDDQGEPVPPGEV--------GELLTRGPYTIRGYYRAPEHNARAFTD 362
Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
DG++ TGD+ +I +G +++ R K+ I GE ++ E +EN+
Sbjct: 363 DGFYRTGDLVRIDADGYYRVVGRIKDQI-NRGGEKISPEEIENL 405
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 1e-17
Identities = 137/513 (26%), Positives = 191/513 (37%), Gaps = 159/513 (30%)
Query: 64 RPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNA 123
PF++ G TY ++ ++ + L A G +PG RV + P EA+ A
Sbjct: 18 APFIETPDGLRY--TYGDLDAASARLANLLVALGVKPGDRVAVQVEKSP---EAL----A 68
Query: 124 LSLICV-------PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM 176
L L + PL +++ + AE + V D LS A
Sbjct: 69 LYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPA-LVVCDPANFAWLSK---IAAAAGAP 124
Query: 177 VCFT-------SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 229
T SL D+F E +P ++ I+YTS
Sbjct: 125 HVETLDADGTGSLLEAAAAAP----------DDF---------ETVPRGADDLAAILYTS 165
Query: 230 GTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF 288
GT+G KG +L+H + + ++ VD + + T DDV + LP+ H
Sbjct: 166 GTTGRSKGAMLSHGNLLSNALTLVDYW------RFTPDDVLIHALPIFHT---------- 209
Query: 289 RRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348
HG A LLAG +F L + FD
Sbjct: 210 ---------HGLFVAT-------NVALLAGASMIF----------------LPK--FDP- 234
Query: 349 YKYKLAWMN-----MG----YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
LA M MG Y + P + A +RL ISG APL E
Sbjct: 235 -DAVLALMPRATVMMGVPTFYTRLLQEP-----RLTREAAA---HMRLFISGSAPLLAET 285
Query: 400 -EEFLRVTCCAFLVQGYGLTETCGPT-----------TVCFPDEMCMVGTAGPVSVYSEL 447
EF T A L + YG+TET T TV FP + G L
Sbjct: 286 HREFQERTGHAIL-ERYGMTETNMNTSNPYDGERRAGTVGFP----LPGV--------SL 332
Query: 448 RLEEVPEMGYSPLDDPPCGEVC---VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI 503
R+ + PE G + L P GE+ V+G +F GY++ P+ T E DG+F TGD+G+I
Sbjct: 333 RVTD-PETG-AEL---PPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKI 387
Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
G V I+ R K+LI IS G Y NVY
Sbjct: 388 DERGYVHIVGRGKDLI-ISGG-Y-------NVY 411
|
Length = 504 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 2e-17
Identities = 59/173 (34%), Positives = 83/173 (47%), Gaps = 22/173 (12%)
Query: 390 SGGAP----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---------PDEMCMVG 436
+G AP L E+ RVT YGL+ET GP+TVC P+E +
Sbjct: 318 AGAAPPPSVLFAMSEKGFRVT------HTYGLSETYGPSTVCAWKPEWDSLPPEEQARLN 371
Query: 437 TAGPVSVYSELRLEEV--PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 494
V L+ V M P D GE+ +RG + GY KNP E+ +GW
Sbjct: 372 ARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGW 431
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
FH+GD+G P+G ++I DR K++I IS GE ++ +ENV P + + V
Sbjct: 432 FHSGDLGVKHPDGYIEIKDRSKDII-ISGGENISSLEVENVVYTHPAVLEASV 483
|
Length = 567 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 3e-17
Identities = 117/532 (21%), Positives = 174/532 (32%), Gaps = 158/532 (29%)
Query: 57 GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116
GNR FVDG VL + + L G G V I N ++E
Sbjct: 29 GNRRRTGHEFVDG----------------VLSLAAGLLRLGLRNGDVVAIAALNSDLYLE 72
Query: 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF--------VFVQDKKVK----ELLS 164
+ A I PL N+ E + V D+ EL +
Sbjct: 73 WLLAVACAGGIVAPL---------NYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQN 123
Query: 165 PDCRSAQRLRVMVCFTS-------LTAEQKEMAVQTGIKP----YSWDEFLHLGKVNEME 213
S +V + S + EM Q + Y+W
Sbjct: 124 DRLPSL-MWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYAW------------- 169
Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-----DDV 268
P + I +TSGT+G PKGV ++H + Q K+ + DDV
Sbjct: 170 ----APDDAVLICFTSGTTGRPKGVTISHSALIV----------QSLAKIAIVGYGEDDV 215
Query: 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
YL PL HI G L++ LM G V
Sbjct: 216 YLHTAPLCHI--------------------GGLSSALAMLM-------VGACHVL----- 243
Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-------ADLLAF-RKVKAR 380
+ K FDA K A + KQ + + ADL++ RK
Sbjct: 244 -LPK------------FDA----KAALQAI--KQHNVTSMITVPAMMADLISLTRKSMTW 284
Query: 381 LGGR-LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
+R +++GG LS+ + + ++ A L YG+TE C T + +
Sbjct: 285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK 344
Query: 439 GPVSVYSELRLEEVP--------------EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
+ ++ + V E+ + G + RG + GY+
Sbjct: 345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNS 404
Query: 485 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
T + DGW TGDIG I G + +I R + IK + GE V E +E V
Sbjct: 405 ETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEAV 455
|
Length = 563 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 5e-17
Identities = 88/345 (25%), Positives = 137/345 (39%), Gaps = 111/345 (32%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
I ++SG++G+PKGV+LTH+ + T + + ++T +DV+LS++PL H
Sbjct: 111 IQFSSGSTGEPKGVILTHKNLLTNIEAIIEAA-----EITSEDVFLSWMPLTH------- 158
Query: 285 EYFFRRGASVGYYHGDLNALRDDLME-LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343
+G L + + L PT R+F + RPL
Sbjct: 159 --------DMGLIGFHLTPTALGINQYLMPT------RLFIR------------RPL--L 190
Query: 344 IFDALYKYKLAWM---NMGYKQ------REASPLADLLAFRKVKARLGGRLRLVISGGAP 394
D +++ + N GYK E DL + R L+ +G P
Sbjct: 191 WLDKASQHRATILSSPNFGYKYLLKHFKTEKIIDWDLSSVR-----------LIFNGAEP 239
Query: 395 LSTEV-EEF--------LRVTCCAFLVQGYGLTETCGPTTVCFP---------------- 429
+S ++ EEF LR + YGL E V FP
Sbjct: 240 ISADLCEEFLEKMAPFGLRPNA---MYPVYGLAEAT--LAVSFPKPGEPFKTVCLDRNHL 294
Query: 430 --------------DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
D + V P+ E+R+ V + G L D G + ++G +
Sbjct: 295 KVGVKIIEIDPKNSDAISFVEVGSPID-GCEIRI--VDDAGEV-LPDRTIGHIQIKGDNV 350
Query: 476 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLI 519
SGYY NP+ T++SI DGW TGD+G + NG + I R K++I
Sbjct: 351 TSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVITGRAKDII 394
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 5e-17
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 16/143 (11%)
Query: 411 LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---- 465
+ Q YG+TET T+ D + +G+AG EL++E+ D
Sbjct: 281 VYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK---------DGVVVPPFE 331
Query: 466 -GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
GE+ V+G + GY D TRE+ DGWF TGDIG + G + ++DR+ +LI IS G
Sbjct: 332 EGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLI-ISGG 390
Query: 525 EYVALEYLENVYCVAPIIEDPQV 547
E + +E V P + + V
Sbjct: 391 ENIYPAEIEEVLLSHPGVAEAGV 413
|
Length = 483 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 5e-17
Identities = 50/152 (32%), Positives = 70/152 (46%), Gaps = 6/152 (3%)
Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
LRLV++G L E +++GYG TE +V P GT G
Sbjct: 260 SLRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMGNK-PGTVGRPLP 318
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DGWFHTGDIG 501
E+R+ + L G + VRG + SGY N + T E + DGW+ TGDIG
Sbjct: 319 GIEVRIVSPE--THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIG 376
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
+I +G + I+ R K KI GE V+L +E
Sbjct: 377 KIDEDGFLTIVGRLKRFAKIG-GEMVSLTAVE 407
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 7e-17
Identities = 87/339 (25%), Positives = 122/339 (35%), Gaps = 82/339 (24%)
Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLS----FL- 273
I +YTSGT+G PKGV+ H TF + F + + D S F
Sbjct: 93 IAYWLYTSGTTGKPKGVMHRHRDPLTFA-------EAFARELLGLQPGDRIFSSSKLFFA 145
Query: 274 -PLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
L + L F GAS G A+ D L +PT+L GVP ++
Sbjct: 146 YGLGNSL------LFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALY------ 193
Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
LL A L +RL +
Sbjct: 194 ---------------------------------------RALLESGAGSAPLFRSVRLCV 214
Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
S G L + E ++ G G TE P GT G PV Y E R
Sbjct: 215 SAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAA-RPGTTGRPVPGY-EAR 272
Query: 449 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV 508
L V E G G++ VRG +L GY+ P+ T+ ++ DGW TGD +G
Sbjct: 273 L--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTGDRFSRDADGW 329
Query: 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
+ R ++IK+S G++V+ +E + E P V
Sbjct: 330 YRYQGRADDMIKVS-GQWVSPLEVEAA-----LGEHPAV 362
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 7e-17
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 11/167 (6%)
Query: 383 GRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETC-GPTTVCFPDEMCMVGTAGP 440
L I GG + + +F RV A + YGLTETC G T + E+ +G+ G
Sbjct: 264 DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGR 323
Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
+ E+R+ + + P + GE+C+RG + GY+K+P+ T E+ WF +GD+
Sbjct: 324 ALAHVEIRIAD-GAGRWLPPNMK--GEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDV 380
Query: 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
G + G + + DRKK++I IS GE +A +E V I E P+V
Sbjct: 381 GYLDEEGFLYLTDRKKDMI-ISGGENIASSEVERV-----IYELPEV 421
|
Length = 497 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 1e-16
Identities = 126/526 (23%), Positives = 191/526 (36%), Gaps = 171/526 (32%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
GP V TY ++++ L++ AL G + G RV N + +EA + IC +
Sbjct: 35 GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTV 94
Query: 132 YDTLGPGAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVM---------- 176
L P + +I++HAE D FV + E ++ S +R V+
Sbjct: 95 NPRLFPEQIAWIINHAEDRVVITDLTFV---PILEKIADKLPSVERYVVLTDAAHMPQTT 151
Query: 177 ----VCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTS 232
V + AE ++W F + YTSGT+
Sbjct: 152 LKNAVAYEEWIAEAD--------GDFAWKTF--------------DENTAAGMCYTSGTT 189
Query: 233 GDPKGVVLTHET---IATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------- 278
GDPKGV+ +H + A + D + D L +PL H
Sbjct: 190 GDPKGVLYSHRSNVLHALMANNGDAL------GTSAADTMLPVVPLFHANSWGIAFSAPS 243
Query: 279 -----------LDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL-KPTLLAGVPRVFEKI 326
LD GASV Y +L++ K T AGVP V+ +
Sbjct: 244 MGTKLVMPGAKLD----------GASV--Y---------ELLDTEKVTFTAGVPTVWLML 282
Query: 327 HEGIKKALEELRPLR----------RRIFDALYKYKL----AW-MNMGYKQREASPLADL 371
+ ++K +L L+ R + A + AW M E SPL L
Sbjct: 283 LQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMT------EMSPLGTL 336
Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
A + ++L G RL + QGY P V E
Sbjct: 337 AALKPPFSKLPGDARLDV--------------------LQKQGYP------PFGV----E 366
Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 491
M + AG +E+P D G + VRG + + YY+ I+
Sbjct: 367 MKITDDAG----------KELPW------DGKTFGRLKVRGPAVAAAYYRVDG----EIL 406
Query: 492 D--GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
D G+F TGD+ I G ++I DR K++IK S GE+++ LEN+
Sbjct: 407 DDDGFFDTGDVATIDAYGYMRITDRSKDVIK-SGGEWISSIDLENL 451
|
Length = 542 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 3e-16
Identities = 83/312 (26%), Positives = 114/312 (36%), Gaps = 81/312 (25%)
Query: 228 TSGTSGDPKGVVLTH--ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-VIE 284
T GT+G PK TH E ++ + L L D LPL H+ V
Sbjct: 221 TGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP-------GDTVFCGLPLFHVNALLVTG 273
Query: 285 EYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKAL 334
RGA V GY + + ++ + L+GVP V
Sbjct: 274 LAPLARGAHVVLATPQGYRG---PGVIANFWKIVERYRINFLSGVPTV------------ 318
Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
A LL V LR + G AP
Sbjct: 319 ---------------------------------YAALLQ-VPVDGHDISSLRYALCGAAP 344
Query: 395 LSTEV-EEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
L EV F T +V+GYGLTE TC ++V PD +G+ G Y +R+ +
Sbjct: 345 LPVEVFRRFEAATGVR-IVEGYGLTEATCV-SSVNPPDGERRIGSVGLRLPYQRVRVVIL 402
Query: 453 PEMGYSPLDDPP--CGEVCVRGKTLFSGYY---KNPDLTRESIIDGWFHTGDIGQILPNG 507
+ G D G +C+ G +FSGY N L E DGW +TGD+G+I +G
Sbjct: 403 DDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLE---DGWLNTGDLGRIDADG 459
Query: 508 VVKIIDRKKNLI 519
+ R K+LI
Sbjct: 460 YFWLTGRAKDLI 471
|
Length = 632 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 3e-16
Identities = 77/330 (23%), Positives = 118/330 (35%), Gaps = 91/330 (27%)
Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
P ++ ++YTSG++G PKGV++ H + ++ +++ +T D L F +
Sbjct: 91 DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAW---LQERYG--LTAGDRVLQFASFSF 145
Query: 278 ILDRVIEEYF--FRRGASVGYY------HGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
D + E F GA++ D AL + L E + T+L VP + +
Sbjct: 146 --DASVWEIFPPLLSGATL--VLAPPEVLRDPEALAELLREHRITVLHLVPSLLRAL--- 198
Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
L+ L P LRLVI
Sbjct: 199 ----LDALEPAALP----------------------------------------SLRLVI 214
Query: 390 SGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVC------FPDEMCMVGTAGP-V 441
GG L E V + + A LV YG TET T +G
Sbjct: 215 VGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANT 274
Query: 442 SVY--SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--- 496
VY E L VP GE+ + G + GY P+LT E + F
Sbjct: 275 RVYVLDE-DLRPVPVGV--------PGELYIGGAGVARGYLNRPELTAERFVPDPFGGPG 325
Query: 497 -----TGDIGQILPNGVVKIIDRKKNLIKI 521
TGD+ + LP+G ++ + R + +KI
Sbjct: 326 ERLYRTGDLARWLPDGNLEFLGRADDQVKI 355
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 4e-16
Identities = 79/319 (24%), Positives = 116/319 (36%), Gaps = 83/319 (26%)
Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDD------VYLSFL 273
+ +TSGT+G PK V+ TH + +LD D + T+ D + S
Sbjct: 83 PALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWSSLF 142
Query: 274 -PLAHILDRVIEEYFFRRGASVGYYHGD-LNALR--DDLMELKPTLLAGVPRVFEKIHEG 329
P GA+V YHG +A R + L T P +
Sbjct: 143 APWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY------ 183
Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
R L ++ DL ++ LR V+
Sbjct: 184 --------RMLLQQ--------------------------DLSSYDF------SHLRHVV 203
Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
S G PL+ EV ++ R + GYG TET G FP G+ G P Y R
Sbjct: 204 SAGEPLNPEVIDWWRAATGLPIRDGYGQTET-GLLVANFPGMEVKPGSMGRPAPGY---R 259
Query: 449 LEEVPEMG-YSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
+ + + G P + G++ VR K LF GY K+P+ T +I W+ TGD
Sbjct: 260 VAIIDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTGDRAIK 317
Query: 504 LPNGVVKIIDRKKNLIKIS 522
+G + R ++IK S
Sbjct: 318 DEDGYFWFVGRADDVIKSS 336
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 4e-16
Identities = 76/325 (23%), Positives = 113/325 (34%), Gaps = 91/325 (28%)
Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
P + ++YTSG++G PKGVV+TH I F+ D L F +A
Sbjct: 97 SPDDPAYVIYTSGSTGKPKGVVITHRNICNFL---RAEGAILGI--RPGDRVLQFASIA- 150
Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG---VPRVFEKIHEGIKKAL 334
D I E F TLLAG V E E + + L
Sbjct: 151 -FDVSILEIFT-------------------------TLLAGGTLVIPPEELRLEDLAEFL 184
Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFRKVKARLGGRLRLVISGGA 393
LR ++ +P L LL V LR +I GG
Sbjct: 185 NRLRV--------------TVAHL-------TPSLLALLDPEDVP-----SLRTLILGGE 218
Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETC--GPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
+ + L+ YG TE + P + +G P+ Y+ L
Sbjct: 219 ACPQALVDRWSKPRR--LLNTYGPTEATVTATASRLTPGKPVNIG--RPLPNYTCWVL-- 272
Query: 452 VPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------DGW----FH 496
P +P GE+C+ G + GY P+LT E I + +
Sbjct: 273 ------DPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYR 326
Query: 497 TGDIGQILPNGVVKIIDRKKNLIKI 521
TGD+ + L +G ++ + RK + +KI
Sbjct: 327 TGDLVRYLEDGSLEFLGRKDDQVKI 351
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 7e-16
Identities = 56/170 (32%), Positives = 80/170 (47%), Gaps = 35/170 (20%)
Query: 388 VISGGAP----LSTEVEEFLRVTCCAFLV-QGYGLTETCGPTTVC--------FPDEMCM 434
V++GG+P L +V+ F V YGLTE GP C P+ M
Sbjct: 305 VLTGGSPPPAALVKKVQRL------GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358
Query: 435 ---------VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
+ V V ++ E VP D GE+ ++G ++ GY KNP
Sbjct: 359 ELKARQGVSILGLADVDVKNKETQESVPR------DGKTMGEIVIKGSSIMKGYLKNPKA 412
Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
T E+ GW +TGD+G I P+G V+I DR K++I IS GE ++ +ENV
Sbjct: 413 TSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDII-ISGGENISSVEVENV 461
|
Length = 579 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 9e-16
Identities = 54/166 (32%), Positives = 70/166 (42%), Gaps = 33/166 (19%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-------DEMCMVGT 437
LR VI GAP+ ++ LVQ +GL E G TV P +GT
Sbjct: 282 LRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGT 341
Query: 438 AGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESI 490
G E M DD PP GE+CV G +F+GYY NP+ ++
Sbjct: 342 CG----------FERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF 391
Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
DGWF TGD+G + G + I R ++ IS G NVY
Sbjct: 392 RDGWFRTGDLGHLDARGFLYITGRASDMY-ISGG--------SNVY 428
|
Length = 528 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 1e-15
Identities = 122/494 (24%), Positives = 184/494 (37%), Gaps = 101/494 (20%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY + E VL + S LR G G RV IY + V AM + VP+ L
Sbjct: 27 TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
V IL + + V + +LL P LR ++ + G +P
Sbjct: 87 EQVAHILADCNVR-LLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142
Query: 198 YSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
SW + L LG PP P ++ I+YTSG++G PKGVVL+H + V
Sbjct: 143 ASWPKLLALGDA-----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVAT 197
Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
+L+ DD L+ LPL+ +Y F + + +Y G L D L+
Sbjct: 198 YLE-----NRPDDRLLAVLPLSF-------DYGFNQ-LTTAFYVGATVVLHDYLL----- 239
Query: 315 LLAGVPR-VFEKI-HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
PR V + + GI L + PL ++ +L W P +
Sbjct: 240 -----PRDVLKALEKHGI-TGLAAVPPLWAQLA------QLDW-----------PESAAP 276
Query: 373 AFRKVKARLGGRL-RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
+ R + GG + R +S FL YGLTE T + P+E
Sbjct: 277 SLRYL-TNSGGAMPRATLSRLRSFLPNARLFLM----------YGLTEAFRSTYLP-PEE 324
Query: 432 M----CMVGTAGP---VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
+ +G A P V V E E P GE+ RG + GY+ +P+
Sbjct: 325 VDRRPDSIGKAIPNAEVLVLREDGSECAPG---------EEGELVHRGALVAMGYWNDPE 375
Query: 485 LTRESI--------------IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALE 530
T E + W +GD + G + + R+ +IK S G V+
Sbjct: 376 KTAERFRPLPPFPGELHLPELAVW--SGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSPT 432
Query: 531 YLENVYCVAPIIED 544
+E V ++ +
Sbjct: 433 EVEEVAYATGLVAE 446
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 2e-15
Identities = 64/171 (37%), Positives = 87/171 (50%), Gaps = 11/171 (6%)
Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTE-TCGPTTVCFPDEMCMVGTAGPV 441
+L+ +++ APL+ E+ VQ YGLTE +C T P++ G A
Sbjct: 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKG--HGIAKKN 361
Query: 442 SVYSELRLEEV----PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH 496
SV L EV P+ G S + P GE+CVR + + GYY N + T +I DGW H
Sbjct: 362 SVGFILPNLEVKFIDPDTGRSLPKNTP-GELCVRSQCVMQGYYNNKEETDRTIDEDGWLH 420
Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
TGDIG I +G + I+DR K LIK +G VA LE + P +ED V
Sbjct: 421 TGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAV 470
|
Length = 546 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-15
Identities = 81/353 (22%), Positives = 137/353 (38%), Gaps = 103/353 (29%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
++ I+YTSG++G+PKGV+L+H + + +L+ +T DD L+ LP +
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLE-----LTEDDRILAVLPFSF--- 54
Query: 281 RVIEEY-------FFRRGASV------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
+Y FR G ++ + L L + + T AGVP + +
Sbjct: 55 ----DYGLSQLLTAFRVGGTLVLESRFAFPRDVLKHLAKE----RITGFAGVPTTWAQ-- 104
Query: 328 EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
L L PL R F + LR
Sbjct: 105 ------LLRLDPLAREDFPS-------------------------------------LRY 121
Query: 388 VISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGPVS 442
+ + G L + + + R A L YGLTE +T P+E +G A P
Sbjct: 122 LTNAGGALPAKTILQLRRAFPDAKLFSMYGLTE-AFRSTYLPPEELDRRPDSIGKAIP-- 178
Query: 443 VYSELRLEEVPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------ 491
EL + + D C GE+ RG + GY+ +P+ T E +
Sbjct: 179 -NVELWVVDE--------DGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPG 229
Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
+ +TGD+ ++ G + + RK ++IK ++G V+ +E V C P++ +
Sbjct: 230 EIVLYTGDLVRMDEEGYLYFVGRKDDMIK-TRGYRVSPTEIEEVICAHPLVAE 281
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 8e-15
Identities = 100/354 (28%), Positives = 137/354 (38%), Gaps = 84/354 (23%)
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
P+ W + V++ + P ++ I++TSGT PKGV LTH A ++ L
Sbjct: 167 PFEW--LMRWFGVSDKD-----PEDVAVILFTSGTEKLPKGVPLTH---ANLLANQRACL 216
Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
F K DDV +SFLP H Y F L P LL
Sbjct: 217 KFFSPKE--DDVMMSFLPPFH-------AYGFNSCT------------------LFP-LL 248
Query: 317 AGVPRVF-------EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
+GVP VF +KI E I +A FD + + KQ P
Sbjct: 249 SGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYI-------LKTAKKQESCLP-- 299
Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGP----T 424
LR V+ GG + +E L+ L QGYG TE C P
Sbjct: 300 --------------SLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE-CSPVITIN 344
Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
TV P VG P+ L V E P+ G V RG +LFSGY D
Sbjct: 345 TVNSPKHESCVGM--PIRGMDVLI---VSEETKVPVSSGETGLVLTRGTSLFSGYLGE-D 398
Query: 485 LTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
+ + + W+ TGD+G + +G + + R +KI E V+LE LE++
Sbjct: 399 FGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIG-AEMVSLEALESI 451
|
Length = 539 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-14
Identities = 72/301 (23%), Positives = 115/301 (38%), Gaps = 94/301 (31%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
++TSG++G PK V+ TH + + + ++ V + +LP H
Sbjct: 169 YLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEE---PPVLVDWLPWNHTFGGNHN 225
Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
+ V+ + G V G + L LR E+ PT+ VP+ FE + + AL
Sbjct: 226 FNMVLYNGGTLYIDDGKPVPGLFEETLRNLR----EVSPTVYFNVPKGFEMLVD----AL 277
Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
E LRRR F RLRL+ GA
Sbjct: 278 ERDAALRRRFF-------------------------------------KRLRLLFYAGAA 300
Query: 395 LSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGPVSV 443
L +V + L R+ + G G TET T +P + +G + +
Sbjct: 301 LPQDVWDRLQALAVRTTGERIPMTS----GLGATETAPTATFVHWPTDR-----SGVIGL 351
Query: 444 YS---ELRLEEVPEMG-YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
+ EL+L VP G EV V+G + GY+++P+LT E+ +G++ G
Sbjct: 352 PAPGTELKL--VPNGGKL---------EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIG 400
Query: 499 D 499
D
Sbjct: 401 D 401
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
GE+ VR +L GY+ P+ T E++ DGW HTGDIG+I G + + R+K ++K++
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVN 471
|
Length = 567 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 3e-14
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 21/123 (17%)
Query: 415 YGLTETCGPT-TVCFPDE-MCMVGTAGPVSVYSELRL-----EEVP--EMGYSPLDDPPC 465
YG TE P TV P+E + G+AG + E R+ +V E+G
Sbjct: 319 YGQTEI-APLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVG--------- 368
Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 525
E+ R L GY+ +P+ T E+ GWFH+GD+G + G + ++DRKK++IK + GE
Sbjct: 369 -EIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIK-TGGE 426
Query: 526 YVA 528
VA
Sbjct: 427 NVA 429
|
Length = 523 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 7e-14
Identities = 60/179 (33%), Positives = 85/179 (47%), Gaps = 28/179 (15%)
Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-- 439
L+ V G APLS + +++F++ +QGYG+TE+ VGT G
Sbjct: 319 KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTA------------VGTRGFN 366
Query: 440 --PVSVYSELRLEEVPEMGYSPLD------DPP--CGEVCVRGKTLFSGYYKNPDLTRES 489
+S YS + L P M +D PP CGE+ ++G + GY NP T+ +
Sbjct: 367 TEKLSKYSSVGLL-APNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQST 425
Query: 490 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
I DGW TGDI +G + I+DR K +IK +G +A LE V P I D V
Sbjct: 426 IDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAV 483
|
Length = 560 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 7e-14
Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 36/223 (16%)
Query: 78 TYKEVYEEVLQIVSAL-RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
+Y+E+ EE ++ L + G G RV +Y N PQ+V A A + + VP+
Sbjct: 37 SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96
Query: 137 PGAVNFILDHAEIDFVFV-QD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
+ + + V + KV + RLR ++ + +
Sbjct: 97 EEELAHYVTDSGARVAIVGSELAPKVAPAVG-----NLRLRHVIV----AQYSDYLPAEP 147
Query: 194 GIKPYSW-------DEFLHLGKVNEMEIL-----PP----QPFNICTIMYTSGTSGDPKG 237
I +W G V E L PP P ++ + YTSGT+G PKG
Sbjct: 148 EIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKG 207
Query: 238 VVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
+ TH T+ A V V T + V L+ LPL H+
Sbjct: 208 CMHTHRTVMANAVGSVLWS------NSTPESVVLAVLPLFHVT 244
|
Length = 546 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 81/308 (26%), Positives = 116/308 (37%), Gaps = 65/308 (21%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
++YTSGT+G PKG + H + + GV+L+ + DV+ + A I
Sbjct: 93 LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELA---PRPGDVFWTPADWAWI------ 143
Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
L D L+ P L GVP V R +
Sbjct: 144 -----------------GGLLDVLL---PALYFGVPVV----------------AYRMQR 167
Query: 345 FDALYKYKLAWMNMGYKQREA--SPLADLLAFRKV---KARLGGRLRLVISGGAPLSTEV 399
FD + A M Y A P A L R+V +AR RLR V SGG L E+
Sbjct: 168 FDP--ERAFALMRR-YGVTNAFLPPTA-LKMMRRVGSERARYDLRLRAVASGGESLGEEL 223
Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVC---FPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
E+ R + + YG TE C P +G P + V + G
Sbjct: 224 LEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGH-----EVAVVDDAG 278
Query: 457 YSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR 514
P+ GE+ V+ +F GY+ NP+ T W TGD+G+ +G + R
Sbjct: 279 -RPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTGDLGRRDADGYLWFKGR 337
Query: 515 KKNLIKIS 522
++IK S
Sbjct: 338 ADDVIKSS 345
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-13
Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 35/202 (17%)
Query: 77 KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
T+ E++E V+ + L A G + G RV + N + + + A L + V L L
Sbjct: 28 VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
+ + LD AE+ + D + L P V F L KE +
Sbjct: 88 REELLWQLDDAEVKCLITDDDFEAK-LIPGIS--------VKFAELMNGPKE--EAEIQE 136
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
+ DE + TIMYTSGT+G PKGV+ T+ + S V L
Sbjct: 137 EFDLDE-------------------VATIMYTSGTTGKPKGVIQTYGN--HWWSAVGSAL 175
Query: 257 DQFEDKMTVDDVYLSFLPLAHI 278
+ +T DD +L+ +P+ HI
Sbjct: 176 NL---GLTEDDCWLAAVPIFHI 194
|
Length = 483 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 110/476 (23%), Positives = 177/476 (37%), Gaps = 76/476 (15%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y+E+ V +I L G G V N ++ AC + + PL
Sbjct: 55 SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114
Query: 138 GAVNFILDHAEIDFVFVQDKKVKEL--------LSPDCRSAQRLRVMVCFTSLTAEQKEM 189
++F+L+HA+ VFV + L LR +V + +
Sbjct: 115 RELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSK---LPALRQVVVIDGDGDDSFDR 170
Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
+ T + + D L P P ++ ++YTSGT+G+PKGV+ T T+
Sbjct: 171 VLMTPERDDTPDAAAILAGPR------PSPDDVTQLIYTSGTTGEPKGVMHTANTL---F 221
Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLM 309
S + + ++ E + DV L P+AH G+ +G LM
Sbjct: 222 SNIHPYAERLE--LGGGDVILMASPMAHQ---------------TGFMYG--------LM 256
Query: 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
P +L V + I + A E +R + + L
Sbjct: 257 --MPLIL-NATAVLQDIWNPAR-AAELIRETG----------------VTFTMASTPFLT 296
Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
DL K L + GAP+ + E A +V +G+TE G TV P
Sbjct: 297 DLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTE-NGAVTVTEP 355
Query: 430 D---EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486
D E P+ E+++ + S + G + VRG + F GY K P L
Sbjct: 356 DDALEKASTTDGRPLPGV-EVKVIDANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLN 411
Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
+GWF TGD+ G ++I R K++I I GE + + +EN+ P +
Sbjct: 412 STDA-EGWFDTGDLAFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAV 465
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 3e-13
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 466 GEVCVRG---KTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKI 521
GE+C++G KT+F YY +P T + + DGW HTGD G + G +DR+ N+IK
Sbjct: 367 GEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKR 426
Query: 522 SQGEYVALEYLENVYCVAPIIEDPQV 547
GE V+ LEN+ P I+D V
Sbjct: 427 G-GENVSCVELENIIATHPKIQDIVV 451
|
Length = 517 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 5e-13
Identities = 48/165 (29%), Positives = 62/165 (37%), Gaps = 51/165 (30%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ EV ++ S L A G G RVGIY P+ V A+ A + I VP++ GP
Sbjct: 9 TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGP 68
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
AV L AE + D
Sbjct: 69 DAVATRLQDAEAKVLITADG---------------------------------------- 88
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
FL GK +++ P I+YTSGT+G PKG V TH
Sbjct: 89 -----FLRRGKRVDLKDDP------AMIIYTSGTTGKPKGTVHTH 122
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 6e-13
Identities = 49/155 (31%), Positives = 71/155 (45%), Gaps = 6/155 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEMCMVGTAGP 440
LR + S APL+ E + L+ A +V +G+TE T V + G
Sbjct: 297 LRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGL 356
Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
V + ++ V G PL GEV +RG T+ GY +P +T + DGW TGD+
Sbjct: 357 VGRSTGAQIRIVGSDG-LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDL 415
Query: 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
G + G + I R K LI GE ++ E +E V
Sbjct: 416 GSLSAAGDLSIRGRIKELINRG-GEKISPERVEGV 449
|
Length = 534 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 56/168 (33%), Positives = 75/168 (44%), Gaps = 29/168 (17%)
Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
D LA + R LR + GGA + V E L+ V+GYGLTET T P
Sbjct: 292 DFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPP 351
Query: 430 DE---MCM-VGTAG-------PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
D C+ + T G P + LEE+P GE+ V G +F G
Sbjct: 352 DRPKLQCLGIPTFGVDARVIDPET------LEELP--------PGEVGEIVVHGPQVFKG 397
Query: 479 YYKNPDLTRESII--DG--WFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
Y+ P+ T E+ I DG +F TGD+G++ G I DR K +I S
Sbjct: 398 YWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINAS 445
|
Length = 546 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 3e-12
Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 34/191 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT 134
TY+E EEV + L A G E G RVGI+ N P+WV A + I V P Y
Sbjct: 45 TYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL 104
Query: 135 LGPGAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQ 186
+ + L+ + + D + EL P+ + + + L + +
Sbjct: 105 ---SELEYALNQSGCKALIAADGFKDSDYVAMLYELA-PELATCEPGQ-------LQSAR 153
Query: 187 K---EMAVQTGIKP----YSWDEFLHLGKVNEMEILPP-----QPFNICTIMYTSGTSGD 234
+ G + ++DE L LG+ + L P + I YTSGT+G
Sbjct: 154 LPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGF 213
Query: 235 PKGVVLTHETI 245
PKG LTH I
Sbjct: 214 PKGATLTHRNI 224
|
Length = 559 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 9e-12
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 10/72 (13%)
Query: 466 GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
GE+C RG ++ GY+ +P+ T E+I DGW HTGD+ + G V I+ R K++I I G
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI-IRGG 457
Query: 525 EYVALEYLENVY 536
EN+Y
Sbjct: 458 --------ENIY 461
|
Length = 559 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-11
Identities = 79/323 (24%), Positives = 123/323 (38%), Gaps = 77/323 (23%)
Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274
L F MYTSGT+G PKGV + +A F + + +D + DDV+ +
Sbjct: 86 LDDDLF---AQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAID-----LRDDDVFWN--- 134
Query: 275 LAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
A G+ +G A+ P L G+ VF EG A
Sbjct: 135 ----------------IADPGWAYGLYYAI------TGP-LAMGITTVF---LEGGFTA- 167
Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKA-------RLGGRLRL 387
+D L + + N SP A +R + A R+ +LR+
Sbjct: 168 -------ENTYDVLERLGVT--NFAG-----SPTA----YRMLMAAGADAAARIKLKLRV 209
Query: 388 VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG----PVSV 443
S G PL+ EV + + + YG TET V + AG P+
Sbjct: 210 ASSAGEPLNPEVVRWFQANLGVTIHDHYGQTET--GMPVGNHHALAHEVRAGSMGLPLPG 267
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGD 499
Y L++ + PL D G++ + + FSGY+ +P+ T E I W+ TGD
Sbjct: 268 YRIAVLDDDGQ----PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTGD 323
Query: 500 IGQILPNGVVKIIDRKKNLIKIS 522
+ + +G I R ++I +
Sbjct: 324 LVERDEDGYFWFIGRADDVIISA 346
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-11
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 21/151 (13%)
Query: 385 LRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC-----MVGTA 438
L V G +P+S + E + F Q YG TE T + + +
Sbjct: 283 LETVYYGASPMSPVRLAEAIERFGPIF-AQYYGQTEAPMVITYLRKRDHDPDDPKRLTSC 341
Query: 439 GPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
G + + L EV + GE+CVRG + GY+ P+ T E+ DG
Sbjct: 342 GRPTPGLRVALLDEDGREVA------QGEV--GEICVRGPLVMDGYWNRPEETAEAFRDG 393
Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
W HTGD+ + +G I+DRKK++I ++ G
Sbjct: 394 WLHTGDVAREDEDGFYYIVDRKKDMI-VTGG 423
|
Length = 524 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 8e-11
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 28/158 (17%)
Query: 383 GRLRLVISGGAPLSTE-----VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV-- 435
L + +GGAP + E +++ + + G+G++E T + ++
Sbjct: 252 RHLTALFTGGAPHAAEDILGWLDDGIPMVD------GFGMSE--AGTVFGMSVDCDVIRA 303
Query: 436 --GTAGPVSVYSELRLEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESI 490
G AG + + R+ V + G +D P G E+ +RG L GY++ P T +
Sbjct: 304 KAGAAGIPTPTVQTRV--VDDQG----NDCPAGVPGELLLRGPNLSPGYWRRPQATARAF 357
Query: 491 I-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
DGWF TGDI + +G ++DRKK++ IS GE V
Sbjct: 358 TGDGWFRTGDIARRDADGFFWVVDRKKDMF-ISGGENV 394
|
Length = 488 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 8e-11
Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 35/199 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E ++ LRA G PG V + P+ V A+ A VPL
Sbjct: 14 TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ F+L+ + + + +V +
Sbjct: 74 ERLAFMLEDSGARVLLTDESLAPLA-------RADQLPLVILEEELDAEDAGPPA----- 121
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
++ +MYTSG++G PKGV + H + V + ++
Sbjct: 122 -----------------PAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTN-YIA 163
Query: 258 QFEDKMTVDDVYLSFLPLA 276
DD +L PL+
Sbjct: 164 LDP-----DDRFLQLSPLS 177
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 9e-11
Identities = 93/460 (20%), Positives = 140/460 (30%), Gaps = 106/460 (23%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+ E+ V ++ + L A G G RV ++ NC +WV AC L + +
Sbjct: 37 SRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRS 96
Query: 138 GAVNFILDHAEIDFVFVQDK-------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
V IL ++ V + + PD R +V +
Sbjct: 97 HEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPG 156
Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYT-SGTSGDPKGV------VLTHE 243
+ + L + +++T SGT+ PK V +L H
Sbjct: 157 ARVQLFA------LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHA 210
Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNA 303
G D V L+ LP G G+
Sbjct: 211 RAIARAYGYD-----------PGAVLLAALPFC--------------GV-FGF------- 237
Query: 304 LRDDLMELKPTLLAGVPRVFEKIHEGIK--KALEELR--------PLRRRIFDALYKYKL 353
L L G P V E + + + +AL R + RRI D
Sbjct: 238 -----STLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA----- 287
Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL-----STEVEEFLRVTCC 408
+R P A L F LG L + G PL S+EV+ +
Sbjct: 288 -------GERADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALV----- 335
Query: 409 AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEV 468
P T + G E R+ + L D GE+
Sbjct: 336 -----------ALQPATDPVSVRI----EGGGRPASPEARVRARDPQDGALLPDGESGEI 380
Query: 469 CVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNG 507
+R +L GY NPD T ++ DG+F TGD+G +G
Sbjct: 381 EIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG 420
|
Length = 540 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 48/212 (22%), Positives = 73/212 (34%), Gaps = 28/212 (13%)
Query: 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT 134
+T+ E Y ++ SAL G G V + N P VEA + L
Sbjct: 42 RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTR 101
Query: 135 LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK------- 187
L ++ F+L H E + V D + E+ + +V
Sbjct: 102 LDAASIAFMLRHGEAKVLIV-DTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGAL 160
Query: 188 --EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
E + +G ++W LP ++ + YTSGT+G+PKGVV H
Sbjct: 161 DYEAFLASGDPDFAW-------------TLPADEWDAIALNYTSGTTGNPKGVVYHHRGA 207
Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
+ M VYL LP+ H
Sbjct: 208 YLNALS-----NILAWGMPKHPVYLWTLPMFH 234
|
Length = 545 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 50/160 (31%), Positives = 69/160 (43%), Gaps = 28/160 (17%)
Query: 385 LRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
LR V +G + E + +R+ ++GYG+TET P GT
Sbjct: 909 LRYVFAGAEKVKEETRQTWMEKFGIRI------LEGYGVTET-APVIALNTPMHNKAGTV 961
Query: 439 GPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIIDGW 494
G + E RLE VP + G G + VRG + GY + NP E DGW
Sbjct: 962 GRLLPGIEYRLEPVPGIDEG---------GRLFVRGPNVMLGYLRAENPG-VLEPPADGW 1011
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
+ TGDI I G + I R K KI+ GE ++L +E
Sbjct: 1012 YDTGDIVTIDEEGFITIKGRAKRFAKIA-GEMISLAAVEE 1050
|
Length = 1140 |
| >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 75/360 (20%), Positives = 138/360 (38%), Gaps = 35/360 (9%)
Query: 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
+ +++ SV ++ R LG + G W TY V ++ S L A G PG
Sbjct: 427 RSLGEMWERSVTRHSTFRCLG----QTSESGESEWLTYGTVDARARELGSGLLALGVRPG 482
Query: 102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG-AVNFILDHAEIDFVFVQDKKVK 160
+G+ V AC +PL +G G + ++D +I VF V
Sbjct: 483 DVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMRTLIDEHKIKVVFADRNSVA 539
Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ-TGIKPYSWDEFLHLGKVNEMEILPPQP 219
+L+ CRS ++L +V S E + I ++ G+ + +P +
Sbjct: 540 AILT--CRS-RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGR---LCPVPLKE 593
Query: 220 FNICTIMYT-------SGTSGDPKGVVLTHETIATFVS---GVDLFLDQFEDKMTVDDVY 269
++T S + V +TH + +S + F+ + V
Sbjct: 594 HVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMV---- 649
Query: 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
F P A + +RV F G++V D L+ ++ +PT+L P +F
Sbjct: 650 -HFTPFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQ 706
Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
+ +A E + +F+ ++ + +N+ R S L + FR + LGG + ++
Sbjct: 707 LSRANERYSAVYSWLFERAFQLRSRLINI---HRRDSSLLRFIFFRATQELLGGCVEKIV 763
|
Length = 1452 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 105/458 (22%), Positives = 167/458 (36%), Gaps = 78/458 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y E+ +V ++ +ALR G + RV + + + A ++ V L L
Sbjct: 32 SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
++L+ + VFV ++ ++ + L V A + ++A
Sbjct: 92 DDYAYMLEDSRARVVFVS-GELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLA------- 143
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI---ATFVSGVDL 254
E L + + Q + +Y+SG++G PKGVV TH A + L
Sbjct: 144 ----ELLATE-SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198
Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
+ + DDV S L FF G NAL T
Sbjct: 199 GIRE-------DDVVFSAAKL-----------FFAYGLG--------NAL---------T 223
Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK---LAWMNMGYKQREASPLADL 371
V G L RP +FD L +++ + Y A +
Sbjct: 224 FPMSV---------GATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLY--------AAM 266
Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
LA + A RLRL S G L EV + + +V G G TE P +
Sbjct: 267 LADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGD 326
Query: 432 MCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
+ GT+G PV Y RL V + G P GE+ + G + + Y+ N TR++
Sbjct: 327 V-RYGTSGKPVPGY---RLRLVGDGGQDVAAGEP-GELLISGPSSATMYWNNRAKTRDTF 381
Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
W +GD +G R +++K+S G YV+
Sbjct: 382 QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVS-GIYVS 418
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-10
Identities = 53/173 (30%), Positives = 74/173 (42%), Gaps = 38/173 (21%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAF-------LVQGYGLTETCGPTTVCFPDEMC---- 433
LRLV++G L EV + AF +++GYG TET +V PD +
Sbjct: 900 LRLVVAGAEKLKPEVAD-------AFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK 952
Query: 434 --------MVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
VG P V+V R+ V + L G + + G + GY +P+
Sbjct: 953 RQTGSKEGSVGMPLPGVAV----RI--VDPETFEELPPGEDGLILIGGPQVMKGYLGDPE 1006
Query: 485 LTRESIID----GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
T E I D GW+ TGD G + +G + I DR KI GE V L +E
Sbjct: 1007 KTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVE 1058
|
Length = 1146 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 4e-10
Identities = 69/302 (22%), Positives = 108/302 (35%), Gaps = 96/302 (31%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
++TSG++G PK V+ TH + + ++ V + +LP H
Sbjct: 214 FLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEE---PPVLVDWLPWNHTFGGNHN 270
Query: 279 LDRVIEEYFFRRGASVGYYHGD---LNALRD----DLMELKPTLLAGVPRVFEKIHEGIK 331
L V+ G + Y D D +L E+ PT+ VP+ +E +
Sbjct: 271 LGIVL-----YNGGT--LYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWE----MLV 319
Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
ALE LRRR F RL+L+
Sbjct: 320 PALERDAALRRRFF-------------------------------------SRLKLLFYA 342
Query: 392 GAPLSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGP 440
GA LS +V + L R+ G G+TET T P AG
Sbjct: 343 GAALSQDVWDRLDRVAEATCGERIRMMT----GLGMTETAPSATFTTGPLSR-----AGN 393
Query: 441 VSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHT 497
+ + P E+ P+ EV V+G + GY++ P+LT E+ + G++ +
Sbjct: 394 IGL-------PAPGCEVKLVPVGGKL--EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS 444
Query: 498 GD 499
GD
Sbjct: 445 GD 446
|
Length = 614 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 8e-10
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 518
P D G++ VRG + Y++ ++DGWF TGD+ I +G ++I DR K++
Sbjct: 378 PWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSKDV 434
Query: 519 IKISQGEYVALEYLENV 535
IK S GE+++ +ENV
Sbjct: 435 IK-SGGEWISSIDIENV 450
|
Length = 539 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 9e-10
Identities = 102/477 (21%), Positives = 161/477 (33%), Gaps = 130/477 (27%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y E+ + ++ L A+G P VGI + V + A VPL
Sbjct: 539 SYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQ 598
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ ++LD + + + Q + +L P LR + L + +G P
Sbjct: 599 DRLAYMLDDSGVRLLLTQSHLLAQLPVPA-----GLRSLC----LDEPADLLCGYSGHNP 649
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
+ P N+ ++YTSG++G PKGV ++H +A +V + L
Sbjct: 650 E----------------VALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQ 693
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV---GY-YHGDLNALRDDLMEL 311
+ DD L A D + E F GA++ D A + +
Sbjct: 694 -----LAADDSMLMVSTFA--FDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQ 746
Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
T+L VP + + + + RP R + EA + DL
Sbjct: 747 GVTVLKIVPSHLQALLQA--SRVALPRPQRALVCGG----------------EALQV-DL 787
Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
LA R G R L+ YG TE TTV
Sbjct: 788 LA-RVRALGPGAR--------------------------LINHYGPTE----TTV----- 811
Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP--------------PC-----GEVCVRG 472
EL EE G P+ P P GE+ + G
Sbjct: 812 ---------GVSTYELSDEERD-FGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGG 861
Query: 473 KTLFSGYYKNPDLTRESII------DG--WFHTGDIGQILPNGVVKIIDRKKNLIKI 521
L GY++ P LT E + DG + TGD+ + +GV++ + R + +KI
Sbjct: 862 AGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKI 918
|
Length = 3956 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 52/204 (25%), Positives = 76/204 (37%), Gaps = 32/204 (15%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ I + L+A G PG RV + +V A C I VP
Sbjct: 25 TYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83
Query: 138 GA----VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
G + IL A V V L + L +++ A A+
Sbjct: 84 GRHLARLAAILADAGARAVLT-TSAVLAALRAALAAPAALLLLLIAADDLA-----ALAA 137
Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
W PP P +I + YTSG++G PKGV++TH + ++ +
Sbjct: 138 A----DW------------RPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNL---LANLR 178
Query: 254 LFLDQFEDKMTVDDVYLSFLPLAH 277
F + DDV +S+LPL H
Sbjct: 179 AIARAFG--LDPDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 52/218 (23%), Positives = 83/218 (38%), Gaps = 40/218 (18%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y+++++EV + LRA G + R+ + N WV A AC ++C+P+
Sbjct: 4 SYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSA 60
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+L+ A D + D PD SA T
Sbjct: 61 QQTQHLLNDAGADLLISDD--------PDAASALH--------------------TPFAT 92
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
D ++ L P I YTSG++G PKGV L+ + T V L
Sbjct: 93 LGEDLYIALRPSAN---PVELPAGTAKITYTSGSTGQPKGVCLSAAALET----VAQSLA 145
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASV 294
+ + + +L LPLA +L+ + Y GA+V
Sbjct: 146 EAIA-ILEPERHLCLLPLATLLENIAGVYAPLLMGATV 182
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 53/176 (30%), Positives = 77/176 (43%), Gaps = 43/176 (24%)
Query: 385 LRLVISGGAPLSTEVEEFLR---VTC-CAFLVQGYGLTETCGPTTVCFP--DEMCMVGTA 438
L+ V+ GGA + E+ E + C C GYGLTE +TVC D + VG+
Sbjct: 242 LKAVLLGGAAIPVELTEQAEQQGIRCWC-----GYGLTEMA--STVCAKRADGLAGVGSP 294
Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP---DLTRESIIDGWF 495
P E++L + GE+ +RG +L GY++ L + +GWF
Sbjct: 295 LP---GREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVND---EGWF 334
Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSC 551
T D G+ NG + I+ R NL S GE + E +E V I + P V
Sbjct: 335 ATRDRGEWQ-NGELTILGRLDNLF-FSGGEGIQPEEIERV-----INQHPLVQQVF 383
|
Length = 458 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 439
L+L+ GGA S + L Q +G+ E V + P E+
Sbjct: 300 LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEG----LVNYTRLDDPAEIIFTTQGR 355
Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
P+S E+R+ V + G +P+ G + RG F GYYK P+ + +G+++TG
Sbjct: 356 PMSPDDEVRV--VDDHG-NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG 412
Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
D+ ++ P G + ++ R K+ I GE +A E +EN+ P + D
Sbjct: 413 DLVRLTPEGYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAVHD 457
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 7e-09
Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 28/197 (14%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E ++ L A G PG VGIY N ++VEAM + V +
Sbjct: 30 TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVE 89
Query: 138 GAVNFILDHAEIDFVFVQDK---KVKELLSPDCRSAQRLRVMVCF-TSLTAEQKEMAVQT 193
+ ++LD ++ + + + +V E+L +LR +V + AV
Sbjct: 90 DELRYLLDDSDAVALVYEREFAPRVAEVLP----RLPKLRTLVVVEDGSGNDLLPGAV-- 143
Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
+++ L G E + P ++ ++YT GT+G PKGV+ E D
Sbjct: 144 -----DYEDALAAGS-PERDFGERSPDDL-YLLYTGGTTGMPKGVMWRQE---------D 187
Query: 254 LFLDQFE--DKMTVDDV 268
+F D T + +
Sbjct: 188 IFRVLLGGRDFATGEPI 204
|
Length = 533 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 7e-09
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 27/155 (17%)
Query: 383 GRLRL-VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-P 440
GR L + GG L ++ E L T L YG TET +T T G P
Sbjct: 205 GRESLTALCGGEALPRDLAERLLSTGAE-LWNMYGPTETTIWSTCARVTAADGPVTIGRP 263
Query: 441 V---SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG- 493
+ VY +L+ VP G GE+ + G + GY P+LT E +
Sbjct: 264 IANTQVYVLDEDLQP--VPP-GV-------PGELYIGGDGVARGYLGRPELTAERFVPDP 313
Query: 494 -------WFHTGDIGQILPNGVVKIIDRKKNLIKI 521
+ TGD+ + P+G ++ + R + +KI
Sbjct: 314 FDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKI 348
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 8e-09
Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 30/165 (18%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ I +ALRA+G PG V + + + A+ VP+
Sbjct: 14 TYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPA 73
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
IL A V + A L V+
Sbjct: 74 ERRAAILARAGARAVLTDPGLAQP------EEAPDLLVVAD------------------- 108
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
D P ++ +++TSG++G+PKGV++TH
Sbjct: 109 ---DAAAAESP--APPPPRVDPDDLAYVIFTSGSTGEPKGVMITH 148
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 43/186 (23%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY ++ + + + + A A G G V + N P+ + A+ A L L+ P
Sbjct: 39 TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALH----P 94
Query: 138 -GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
G+++ DHA + ++D + L+ +R ++ A +K
Sbjct: 95 LGSLD---DHAYV----LEDAGISTLIVDPAPFVERALALL------------ARVPSLK 135
Query: 197 PYSWDEFLHLGKVNEMEIL-------PPQPF-------NICTIMYTSGTSGDPKGVVLTH 242
L LG V + L P P +I + YT GT+G PKGV+ TH
Sbjct: 136 -----HVLTLGPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTH 190
Query: 243 ETIATF 248
+IAT
Sbjct: 191 RSIATM 196
|
Length = 524 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 1e-08
Identities = 106/468 (22%), Positives = 166/468 (35%), Gaps = 112/468 (23%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ ++ AL A G P VGI AME + ++ V L L
Sbjct: 4578 TYAELNRRANRLAHALIARGVGPEVLVGI----------AME--RSAEMM-VGLLAVLKA 4624
Query: 138 GAVNFILDHAEIDF------VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
G LD ++ ++D LL+ QRL + SL ++ E
Sbjct: 4625 GGAYVPLD---PEYPRERLAYMMEDSGAALLLT-QSHLLQRLPIPDGLASLALDRDE--- 4677
Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
W+ G + P N+ ++YTSG++G PKGV ++H + V+
Sbjct: 4678 -------DWE-----GFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGS---LVNH 4722
Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASVGYYHGDLNALRDDLM 309
+ +++E +T DD L F+ + D E + GASV +RDD +
Sbjct: 4723 LHATGERYE--LTPDDRVLQFMSFS--FDGSHEGLYHPLINGASV--------VIRDDSL 4770
Query: 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
L A +IHE + +F +Y +LA A
Sbjct: 4771 WDPERLYA-------EIHE---------HRVTVLVFPPVYLQQLA--------EHAERDG 4806
Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET--------C 421
+ + R G A + R +L GYG TET
Sbjct: 4807 EPPSLRVY----------CFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKA 4856
Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
C M + G S Y V + +PL GE+ + G+ + GY +
Sbjct: 4857 RDGDACGAAYMPIGTPLGNRSGY-------VLDGQLNPLPVGVAGELYLGGEGVARGYLE 4909
Query: 482 NPDLTRESIIDGWF--------HTGDIGQILPNGVVKIIDRKKNLIKI 521
P LT E + F TGD+ + +GV+ + R + +KI
Sbjct: 4910 RPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKI 4957
|
Length = 5163 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 6/157 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
L V GA + V E + V YG TE + P GT +
Sbjct: 271 LEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTEAMNSLYMRDPRT----GTEMRPGFF 326
Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
SE+R+ + L + GE+ V F+GY P T E + DGW+ T D+ +
Sbjct: 327 SEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQDGWYRTSDVAVV 386
Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
P+G V+I+ R ++I IS GE + +E V AP
Sbjct: 387 DPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAP 422
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 55/222 (24%), Positives = 81/222 (36%), Gaps = 49/222 (22%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
G W T++E+ V + +AL A G G R+ ++ NC Q E+M A L + VP
Sbjct: 29 GDRSW-TWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVP- 86
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------- 182
NF E+ ++ A R M+C
Sbjct: 87 --------TNFRQTPDEVAYL---------------AEASGARAMICHADFPEHAAAVRA 123
Query: 183 TAEQKEMAVQTGIKPY--SWDEFL--HLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKG 237
+ V G ++ + HLG +V + P C +TSGT+G PK
Sbjct: 124 ASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDDP---CWFFFTSGTTGRPKA 180
Query: 238 VVLTHETIATFVSG--VDLFLDQFEDKMTVDDVYLSFLPLAH 277
VLTH +A ++ DL T D L PL+H
Sbjct: 181 AVLTHGQMAFVITNHLADLMPG-----TTEQDASLVVAPLSH 217
|
Length = 528 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 3e-08
Identities = 70/317 (22%), Positives = 116/317 (36%), Gaps = 66/317 (20%)
Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
N+ ++YTSG++G PKGV ++H + +++ D L F+ +
Sbjct: 2145 GENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAA-----GERYELSPADCELQFMSFS-- 2197
Query: 279 LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
D E++F GA V +RDD + L + R G+
Sbjct: 2198 FDGAHEQWFHPLLNGARV--------LIRDDELWDPEQLYDEMER------HGVTIL--- 2240
Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
F +Y +LA + +R+ P A +R+ GG +
Sbjct: 2241 -------DFPPVYLQQLA----EHAERDGRPPA---------------VRVYCFGGEAVP 2274
Query: 397 TE-VEEFLRVTCCAFLVQGYGLTETCGPTTV--CFPDEMCMVGTAG-PVSVYSELRLEEV 452
+ +L GYG TE + C P + C G A P+ R +
Sbjct: 2275 AASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPC--GAAYVPIGRALGNRRAYI 2332
Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF--------HTGDIGQIL 504
+ + L GE+ + G+ L GY P LT E + F TGD+ +
Sbjct: 2333 LDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYR 2392
Query: 505 PNGVVKIIDRKKNLIKI 521
+GVV+ + R + +KI
Sbjct: 2393 ADGVVEYLGRIDHQVKI 2409
|
Length = 5163 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-08
Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 10/205 (4%)
Query: 78 TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
T+ + + AL G RVG NC + +E + A + + PL L
Sbjct: 40 TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
+ I++HAE D V V D ++ E L + +R +V A+ + GIK
Sbjct: 100 NDQIVHIINHAE-DEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIK 158
Query: 197 PYSWDEFLHLGKVNEMEILPPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
YS++ L G+ + P I Y++GT+G PKGVV +H + ++ + L
Sbjct: 159 VYSYEALLD-GRSTVYD-WPELDETTAAAICYSTGTTGAPKGVVYSHR--SLYLQSLSLR 214
Query: 256 -LDQFEDKMTVDDVYLSFLPLAHIL 279
D +T + +L +P+ H+L
Sbjct: 215 TTDSL--AVTHGESFLCCVPIYHVL 237
|
Length = 576 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 7e-08
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV---GTAG- 439
LR + G PL+ EV F T L++G+G TET T+ M G+ G
Sbjct: 303 LRYCTTAGEPLNPEVFNTFKEKTGIK-LMEGFGQTET----TLTIATFPWMEPKPGSMGK 357
Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR---GKT--LFSGYYKNPDLTRESIIDGW 494
P Y ++ + G + GE+ +R GK LF GYY++P+ T E DG+
Sbjct: 358 PSPGYD---IDIIDPDG-KSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGY 413
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKIS 522
+HTGD + +G + + R +LIK S
Sbjct: 414 YHTGDTAWMDEDGYLWFVGRADDLIKSS 441
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 8e-08
Identities = 95/487 (19%), Positives = 152/487 (31%), Gaps = 87/487 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLG 136
TY EVY+ +++ LRA G G RV G N + +EA +++ L
Sbjct: 26 TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT-ANPRLS 84
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
P + +IL+HAE + LL + + K
Sbjct: 85 PKEIAYILNHAEDKVLLFD----PNLLPL---VEAIRGELKTVQHFVVMDE--------K 129
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
E + + C + YT+GT+G PKGVV +H + L
Sbjct: 130 APEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD 189
Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR---------DD 307
+ V L +P+ H+ + + +
Sbjct: 190 GTALSEKD---VVLPVVPMFHVNAWC---LPY----AATLVGAKQVLPGPRLDPASLVEL 239
Query: 308 LMELKPTLLAGVPRVFEKI---HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
T AGVP V+ + E K + G
Sbjct: 240 FDGEGVTFTAGVPTVWLALADYLESTGHR---------------LKTLRRLVVGG----- 279
Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC--G 422
++ L+A + + + G TE +
Sbjct: 280 SAAPRSLIARFER-----MGVEVRQGYGL---TET---------------SPVVVQNFVK 316
Query: 423 PTTVCFPDEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
+E + + + + E P D GEV ++G + GYY
Sbjct: 317 SHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYG 376
Query: 482 NPDLTR-ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
N + TR DG+F TGDI G V+I DR K+LIK GE+++ LEN P
Sbjct: 377 NEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHP 435
Query: 541 IIEDPQV 547
+++ V
Sbjct: 436 KVKEAAV 442
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 67/300 (22%), Positives = 110/300 (36%), Gaps = 81/300 (27%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI------ 278
++TSG++G PK V+ T + ++ + + V L ++P H
Sbjct: 225 YLFTSGSTGMPKAVINTQRMMCANIAMQEQLRP--REPDPPPPVSLDWMPWNHTMGGNAN 282
Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
+ ++ + G + G + + LR E+ PT+ VP + + E A+
Sbjct: 283 FNGLLWGGGTLYIDDGKPLPGMFEETIRNLR----EISPTVYGNVPAGYAMLAE----AM 334
Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
E+ LRR F LRL+ GGA
Sbjct: 335 EKDDALRRSFFK-------------------------------------NLRLMAYGGAT 357
Query: 395 LSTEVEEFLRVTCCA------FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR 448
LS ++ E ++ GYG TET PTT + VG G EL+
Sbjct: 358 LSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLPLPGVELK 416
Query: 449 LEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504
L P G EV V+G + GY+K+P+LT + +G++ GD + +
Sbjct: 417 L-------------APVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFV 463
|
Length = 624 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 439
LRL+ GGA LS + + L Q +G+ E V + P E+ ++ T G
Sbjct: 307 LRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEG----LVNYTRLDDPPEI-IIHTQG 361
Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT 497
P+S E+R+ V G +P+ GE+ RG GYY+ P+ + DG++ +
Sbjct: 362 RPLSPDDEVRV--VDADG-NPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRS 418
Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
GD+ + P+G + + R K+ I GE +A E +EN+ P + D
Sbjct: 419 GDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHD 464
|
Length = 542 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E V ++ + L A G PG RV + NCP+++ A A N L + VP+ L
Sbjct: 5 TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64
Query: 138 GAVNFILDHAEIDFVFV 154
+ ILDH+ + V
Sbjct: 65 EELAHILDHSGARLIVV 81
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 8/62 (12%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL----DQFEDKMTVDDVYLSFLPLA 276
++ IMY+SGT+G KGVVLTH ++ V+LF+ Q+E + D+VYL+ LP+
Sbjct: 199 DVAAIMYSSGTTGASKGVVLTHR---NLIAMVELFVRFEASQYEYPGS-DNVYLAALPMF 254
Query: 277 HI 278
HI
Sbjct: 255 HI 256
|
Length = 560 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 34/158 (21%)
Query: 385 LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTT--VCFP-DEMCMVGTAGP 440
LR ++ GG LS V L L+ GYG TE TT C + + P
Sbjct: 242 LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTEN---TTFSTCHVITRLDEAADSIP 298
Query: 441 V-------SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
+ +VY E + + G E+ V G L GY P+LT E
Sbjct: 299 IGRPIPNTTVYILDEEGQPVPIGVPG----------ELYVGGDGLALGYLNRPELTAERF 348
Query: 491 ID-----G--WFHTGDIGQILPNGVVKIIDRKKNLIKI 521
+ G + TGD+ + P+G ++ + R +KI
Sbjct: 349 VPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKI 386
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 27/176 (15%)
Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEE---FLRVTCCAFLVQGYGLTETCGPTTVC 427
L+A + LR V GGA +S + + L + + +GYGL+E ++
Sbjct: 225 LVAAVEQGPLPPESLRFVAVGGARVSPSLLQRARALGLP----VYEGYGLSECASVVSLN 280
Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
P G+ G + ++ + D GE+ VRG +L GY P T
Sbjct: 281 TPGAD-RPGSVGKPLPHVQVSIAN----------D---GEILVRG-SLMLGYLGEPPAT- 324
Query: 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
D W+ TGD+G + G + I RKKNLI S G V+ E++E+ AP I
Sbjct: 325 ----DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIA 376
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
PL + G +CVRG +L SGY+++ + DGW TGD+G +L +G + I R K+
Sbjct: 404 MPLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL-DGYLYITGRAKD 462
Query: 518 LIKI 521
LI I
Sbjct: 463 LIII 466
|
Length = 579 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 91/459 (19%), Positives = 144/459 (31%), Gaps = 125/459 (27%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y+E+ E + + L + G G RV P+ A L + PL+ GP
Sbjct: 2 SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
I D E+ +V++ L + +
Sbjct: 62 EP---IRDRLEL---------------------GEAKVLITTPEL---YERTDPEDPA-- 92
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
LH +TSGT+G PKGV+ H + + LD
Sbjct: 93 -----LLH---------------------FTSGTTGKPKGVLHVHRAVVAHYATARYVLD 126
Query: 258 QFEDKM---TVDD------VYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR--D 306
D + T D Y PL + G ++ G+ +A R
Sbjct: 127 LRPDDVYWCTADPGWVTGTSYGIIAPLLN-------------GVTLVVDEGEFDAERWYG 173
Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
L E K T+ P LR L R + +Y L
Sbjct: 174 ILEEEKVTVWYTAPTA--------------LRMLMRAGPELAARYDL------------- 206
Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426
LR + S G PL+ EV + + + TET
Sbjct: 207 ----------------SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIA 250
Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRG--KTLFSGYYKNP 483
+P G+ G E + E G +P+ P GE+ ++ ++F GY N
Sbjct: 251 NYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNE 310
Query: 484 DLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
+ S +DGW+ TGD+ +G + R ++IK +
Sbjct: 311 ERYASSFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTA 349
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 68/324 (20%), Positives = 111/324 (34%), Gaps = 79/324 (24%)
Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
N+ ++YTSG++G PKGV + H +A + + ++ +D L F+ +
Sbjct: 3235 MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWI-----AEAYELDANDRVLLFMSFS- 3288
Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
D E + TL+ G V + + EEL
Sbjct: 3289 -FDGAQERFL-------------------------WTLICGGCLV---VRDNDLWDPEEL 3319
Query: 338 RPL--RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
RI A + + L L + + GG +
Sbjct: 3320 WQAIHAHRISIACFP--------------PAYLQQFAEDAGGAD--CASLDIYVFGGEAV 3363
Query: 396 ST-EVEEFLRVTCCAFLVQGYGLTET--------CGPTTVCFPDEMCMVGTAGPVSVYS- 445
E+ R L GYG TE CG VC + S+Y
Sbjct: 3364 PPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVL 3423
Query: 446 ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------T 497
+ +L VP +G + GE+ + G L GY++ P LT E + F T
Sbjct: 3424 DGQLNPVP-VGVA-------GELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRT 3475
Query: 498 GDIGQILPNGVVKIIDRKKNLIKI 521
GD+ + +GV++ + R + +KI
Sbjct: 3476 GDLARYRADGVIEYLGRIDHQVKI 3499
|
Length = 3956 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 23/158 (14%)
Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTC-----CAFLVQGYGLTETCGPTTVCFP------D 430
G LR+ ++GG P+ + E F YGL E+ TV P D
Sbjct: 272 GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVD 331
Query: 431 EMCMVGTAGP--VSVYSE----LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
E+ +G +V + + P G + + GE+ +RG ++ SGY
Sbjct: 332 EVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAP 391
Query: 485 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
+ D WF TGD+G ++ G+V + R K LI ++
Sbjct: 392 IDP----DDWFPTGDLGYLVDGGLV-VCGRAKELITVA 424
|
Length = 525 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 31/164 (18%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ V ++ + LR G G R+ + N V AC + I VPL
Sbjct: 24 TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPL------ 77
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
N+ L +E+D +QD + + LL D +A R + + A A++ P
Sbjct: 78 ---NWRLSASELD-ALLQDAEPRLLLGDDAVAAGRT-DVEDLAAFIASAD--ALEPADTP 130
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
+PP+ ++ I++TSGTSG PKGV+L+
Sbjct: 131 S----------------IPPERVSL--ILFTSGTSGQPKGVMLS 156
|
Length = 488 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 25/212 (11%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E + + LR G G RV ++ NCPQ+ L + VP+
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------TAEQKEM 189
+++ L+ A + + D+ + R+ LR V TSL T +
Sbjct: 120 HELSYELNDAGAEVLLALDQLAP--VVEQVRAETSLR-HVIVTSLADVLPAEPTLPLPDS 176
Query: 190 AVQTGIKPYSWDEFL-HLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHE---- 243
+ + L L LP P + + YT GT+G PKG T
Sbjct: 177 LRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVY 236
Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
T A V + + D V+LSFLP
Sbjct: 237 TAAAAY-AVAVVGGE-------DSVFLSFLPE 260
|
Length = 567 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 7e-07
Identities = 48/182 (26%), Positives = 67/182 (36%), Gaps = 48/182 (26%)
Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG---------YGLTETC----------G 422
R+ +G P+ + +E F F G YGL E G
Sbjct: 270 SSWRVAFNGAEPVRADTLERFAE----RFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAG 325
Query: 423 PTTVCFPDEMCMVGTAGP-----------VSVYSELRLEEV----PEMGYSPLDDPPCGE 467
P + + G A VS L EV PE PL D GE
Sbjct: 326 PVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVDPE-TRRPLPDGEVGE 384
Query: 468 VCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
+ VRG ++ +GY+ P+ T E+ GW TGD+G L +G + + R K+LI
Sbjct: 385 IWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG-FLHDGELYVTGRLKDLII 443
Query: 521 IS 522
I
Sbjct: 444 IR 445
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 8e-07
Identities = 66/314 (21%), Positives = 110/314 (35%), Gaps = 67/314 (21%)
Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
P N+ ++YTSG++G PKGV + H ++ + + + V D L F +
Sbjct: 3195 PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG-----LGVGDRVLQFTTFS-- 3247
Query: 279 LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
D +EE F GA V L P LL +
Sbjct: 3248 FDVFVEELFWPLMSGARV--------VLAGPEDWRDPALLVEL----------------- 3282
Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
+ D L+ Y + A L+ ++ GG L
Sbjct: 3283 ---INSEGVDVLHAYPSMLQA---------------FLEEEDAHRCTSLKRIVCGGEALP 3324
Query: 397 TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL--RLEEVPE 454
++++ +V L YG TE T+ C+ V + + R + +
Sbjct: 3325 ADLQQ--QVFAGLPLYNLYGPTE----ATITVTHWQCVEEGKDAVPIGRPIANRACYILD 3378
Query: 455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNG 507
P+ GE+ + G+ L GY+ P LT E + F TGD+ + +G
Sbjct: 3379 GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADG 3438
Query: 508 VVKIIDRKKNLIKI 521
V++ I R + +KI
Sbjct: 3439 VIEYIGRVDHQVKI 3452
|
Length = 5163 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 35/168 (20%)
Query: 384 RLRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437
RLR V++G L ++ LR+ ++GYG+TE C P GT
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRI------LEGYGVTE-CAPVVSINVPMAAKPGT 532
Query: 438 AGPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIID- 492
G + + RL VP E G G + ++G + +GY + P + +
Sbjct: 533 VGRILPGMDARLLSVPGIEQG---------GRLQLKGPNIMNGYLRVEKPGVLEVPTAEN 583
Query: 493 -------GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
GW+ TGDI + G V+I R K KI+ GE V+LE +E
Sbjct: 584 ARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIA-GEMVSLEMVE 630
|
Length = 718 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 9e-07
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 466 GEVCVRGKTLFSGYYKNP-----------------DLTRESIIDGWFHTGDIGQILPNGV 508
GE+ VRG + + YY +P D DGW TGD+G + +G
Sbjct: 386 GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGF 445
Query: 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
+ I DR +++I+ S GE++ LEN AP +
Sbjct: 446 LTIHDRARDVIR-SGGEWIYSAQLENYIMAAPEV 478
|
Length = 576 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDG-----WFHTGDIGQILPNGVVKIIDRKKNLIK 520
GE+ + G + GY+ +P+LT E I + TGD+G+ P+G ++ + R + +K
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVK 386
Query: 521 IS 522
I
Sbjct: 387 IR 388
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 40/188 (21%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
++ E+ +V ++ +ALR G +PG RV Y N P+ V AM A ++ I C P
Sbjct: 88 SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSP---D 144
Query: 135 LGPGAVNFILDHAE---------IDFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
G AV LD +D K K+ E++ P L +V
Sbjct: 145 FGVEAV---LDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS------LEAVV 195
Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--PPQPFN-ICTIMYTSGTSGD 234
L++ Q +S L + L PF+ I+Y+SGT+G
Sbjct: 196 VVPYLSS-----DAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGL 250
Query: 235 PKGVVLTH 242
PK +V
Sbjct: 251 PKCIVHGA 258
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 31/177 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY++ Q+ AL A G EPG RVG N + +EA + +C + L P
Sbjct: 41 TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFP 100
Query: 138 GAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM--- 189
+ +I++HAE D F+ + + L+P C + + M L A +
Sbjct: 101 EQIAYIVNHAEDRYVLFDLTFL---PLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCY 157
Query: 190 ----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
Q G Y W F +E Q ++C YTSGT+G+PKG + +H
Sbjct: 158 ETLVGAQDG--DYDWPRF------DEN-----QASSLC---YTSGTTGNPKGALYSH 198
|
Length = 539 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 9/143 (6%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSV 443
LR VI AP +V+ + + + YG TE+ G T ++ + GT G +
Sbjct: 273 LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTES-GAVTFATSEDALSHPGTVGKAAP 331
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
+ELR V E G PL GE+ R G F+ Y+ P+ E G+ +GD+G
Sbjct: 332 GAELRF--VDEDG-RPLPQGEIGEIYSRIAGNPDFT-YHNKPEKRAEIDRGGFITSGDVG 387
Query: 502 QILPNGVVKIIDRKKNLIKISQG 524
+ +G + + DRK++++ IS G
Sbjct: 388 YLDADGYLFLCDRKRDMV-ISGG 409
|
Length = 509 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 19/210 (9%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA---MEACNALSLICVPLYDT 134
T+ + Y+ ++ SAL PG V + N P EA + A+ + CV +
Sbjct: 47 TWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAV-VNCVNI--R 103
Query: 135 LGPGAVNFILDHAEIDFVFVQDK------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKE 188
L + F+L+H++ + V V + + ++L+ +S+ + +++ T + K
Sbjct: 104 LNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKS 163
Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIAT 247
+ G +++FL G E PP + + YTSGT+ PKGVVL H
Sbjct: 164 LQYALGKGAIEYEKFLETGD-PEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYL 222
Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
L M VYL LP+ H
Sbjct: 223 MALSNALIWG-----MNEGAVYLWTLPMFH 247
|
Length = 567 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 72/344 (20%), Positives = 107/344 (31%), Gaps = 86/344 (25%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD---- 280
I++TSG++G PKGVV TH TF + +D + + D L+ P +
Sbjct: 90 ILFTSGSTGPPKGVVYTHR---TFAAQIDALRSLYG--IREGDRDLAAFPPFALFGPALG 144
Query: 281 --RVIEEYFFRRGASV--GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
VI A++ + + + P LL V R E+ L
Sbjct: 145 VTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEE----NGIQLPS 200
Query: 337 LR-----------PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385
LR L RR L Y EA P+A +
Sbjct: 201 LRRVLSAGAPVPPDLLRRFVANLMPEAEIHTP--YGATEALPVASI------------EG 246
Query: 386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS 445
R V++ S E E C V G D + GP++ +
Sbjct: 247 REVLAE----SAEPPEAGAGVCVGHPVPGI--------------DVRIIPIDDGPIASWD 288
Query: 446 ---ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTG 498
EL EV GE+ V G + YY P+ T+ + I W G
Sbjct: 289 DDIELPPGEV-------------GEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMG 335
Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEY------VALEYLENVY 536
D+G G + RK + ++ + G V
Sbjct: 336 DLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVR 379
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 23/175 (13%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+Y+EV ++ LR G G RV IY P+ V AM AC + I ++
Sbjct: 75 TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFAS 134
Query: 138 GAVNFILDHAE------IDFVFVQDKKV--KELLSPDCRSAQR--LRVMVCFTSLTAEQK 187
+ +D A+ F + V K LL +Q +V++ L Q
Sbjct: 135 KELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLI----LNRGQV 190
Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVV 239
++ G + W E + + + P + I+YTSGT+G PKGVV
Sbjct: 191 PAPLKPG-RDLDWAELMA-----KARPVDCVPVESTDPLYILYTSGTTGKPKGVV 239
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 42/169 (24%), Positives = 61/169 (36%), Gaps = 36/169 (21%)
Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
DL + RLR +S G PL+ EV E ++ + GYG TET
Sbjct: 191 QQDLAQYDV-------RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTET------- 236
Query: 428 FPDEMCMVGT--AGPVSVYSELRLEEVPEMGY-----SPLDDPPC---GEVCV----RGK 473
M+G V S R P GY GE+ + R
Sbjct: 237 ----TAMIGNSPGQKVKPGSMGR----PLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPI 288
Query: 474 TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
L GY +P+ T + G++ TGD +G + + R ++ K S
Sbjct: 289 GLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSS 337
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-06
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV--DDVYLSFL 273
+P + I++TSG+ G PKGVVL+H + + DQ + + +DV L L
Sbjct: 141 GAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANI-------DQIAAVIDLNTEDVLLGAL 193
Query: 274 PLAH 277
PL H
Sbjct: 194 PLFH 197
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-06
Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 35/206 (16%)
Query: 79 YKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG 138
Y+ + L A G +PG RV + +VEA AC L+ VPL P
Sbjct: 52 YQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPL-----PL 106
Query: 139 AVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA-----VQT 193
+ F + I +++ +L+ SAQ T E
Sbjct: 107 PMGFGGRESYIA-------QLRGMLA----SAQ---PAAIITP--DELLPWVNEATHGNP 150
Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
+ S F ++ + P P +I + Y+SG++ P+GV++TH + + +
Sbjct: 151 LLHVLSHAWF-KALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAIS 209
Query: 254 LFLDQFEDKMTV--DDVYLSFLPLAH 277
D + V D +S+LP H
Sbjct: 210 H------DGLKVRPGDRCVSWLPFYH 229
|
Length = 579 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 19/204 (9%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y E+ EE+ + + + G G +V ++ NCP+++ + I VP+ L
Sbjct: 39 SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR 98
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+IL +++ + + A LR +C T + +
Sbjct: 99 EESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLR-HICLTRVALPADDGVS------ 151
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
S+ + P + I++TSGT+ PKGVV+TH + F
Sbjct: 152 -SFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNL--------RFAG 202
Query: 258 QFED---KMTVDDVYLSFLPLAHI 278
+ + DDVYL+ +P HI
Sbjct: 203 YYSAWQCALRDDDVYLTVMPAFHI 226
|
Length = 517 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-06
Identities = 51/204 (25%), Positives = 74/204 (36%), Gaps = 22/204 (10%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ ++ LRA G G V I N P++ E A L P
Sbjct: 13 TYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTP------- 65
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
+N+ L AEI ++ V D K L+ S + + V +
Sbjct: 66 --INWHLTAAEIAYI-VDDSGAKVLIVSAALADT--AAELAAELPAGVPL-LLVVAGPVP 119
Query: 197 PY-SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV--LTHETIATFVSGVD 253
+ S++E L + ++Y+SGT+G PKG+ L G+
Sbjct: 120 GFRSYEEALAAQPDTPIADETAG----ADMLYSSGTTGRPKGIKRPLPGLDPDE-APGMM 174
Query: 254 LFLDQFEDKMTVDDVYLSFLPLAH 277
L L F D VYLS PL H
Sbjct: 175 LALLGFGMYGGPDSVYLSPAPLYH 198
|
Length = 502 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 14/112 (12%)
Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP----VSVYSELRLEEVP-- 453
EF R C + GYG +E + G+ G V++Y+ L E
Sbjct: 281 AEFSRRFGCQ-VEDGYGSSEGAVIVV---REPGTPPGSIGRGAPGVAIYNPETLTECAVA 336
Query: 454 ---EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
G D GE V G F GYY NP+ T E + G + +GD+
Sbjct: 337 RFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLA 388
|
Length = 540 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 69/327 (21%), Positives = 115/327 (35%), Gaps = 75/327 (22%)
Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
+ P N+ ++YTSG++G PKG H + V+ + + ++ ++ DV L F
Sbjct: 1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGAL---VNRLCATQEAYQ--LSAADVVLQFT 1766
Query: 274 PLAHILDRVIEEYFFR--RGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
A D + E F+ GA + H D L + + T L VP + +++
Sbjct: 1767 SFA--FDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLL 1824
Query: 328 EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
+ + + +E LRR + EA + A R RL
Sbjct: 1825 Q-MDEQVEHPLSLRRVVCGG----------------EALEVE---ALRPWLERLPDT--- 1861
Query: 388 VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC-----GPTTVCFPDEMCMVGTAGPVS 442
L YG TET + V P++
Sbjct: 1862 ----------------------GLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIA 1899
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF------- 495
S L+ +P+ GE+ + G L GY P LT E + F
Sbjct: 1900 NLSTYILDA----SLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRL 1955
Query: 496 -HTGDIGQILPNGVVKIIDRKKNLIKI 521
TGD+ + +GV++ + R + +KI
Sbjct: 1956 YRTGDLARYRADGVIEYLGRIDHQVKI 1982
|
Length = 3956 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 12/124 (9%)
Query: 385 LRLVISG-GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMVGTAGPV 441
LR+V GAP ++ F R C +V G+G TE G PD + V
Sbjct: 269 LRIVYGNEGAP--GDIARFARRFGCV-VVDGFGSTEG-GVAITRTPDTPPGALGPLPPGV 324
Query: 442 SVYSELRLEEVP----EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPDLTRESIIDGWFH 496
++ E P G D GE V G F GYY +P+ E + G +
Sbjct: 325 AIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYW 384
Query: 497 TGDI 500
+GD+
Sbjct: 385 SGDL 388
|
Length = 529 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 46/152 (30%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP--DEMCMVGTAGPVS 442
LRLV GG+ F+ T Q YGL+ET G T +C P D + AG V
Sbjct: 288 LRLVGYGGSRAIAADVRFIEATGVR-TAQVYGLSET-GCTALCLPTDDGSIVKIEAGAVG 345
Query: 443 -VYSELRLEEVPEMGYSPL-----DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH 496
Y + + G P G + ++ GY+ NP+ T E +IDGW +
Sbjct: 346 RPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVN 405
Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
TGD+ + +G I R +I I G +A
Sbjct: 406 TGDLLERREDGFFYIKGRSSEMI-ICGGVNIA 436
|
Length = 540 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 108/513 (21%), Positives = 166/513 (32%), Gaps = 147/513 (28%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E+ + L A G G V + N +V A+ A + + L
Sbjct: 76 TYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSG 135
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ + + V D + +LLS RLR
Sbjct: 136 PQLAEVAAREGVK-ALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGS--------- 185
Query: 198 YSWDEFLHLGKVNEMEILP--PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
+ + L + LP P+P I ++ TSGT+G PKG +
Sbjct: 186 -TDETLDDLIAGSSTAPLPKPPKPGGI--VILTSGTTGTPKGAPRPEPS----------- 231
Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASV----------GYYHGDLNALR 305
PLA +L RV FR G + G+ H L
Sbjct: 232 ---------------PLAPLAGLLSRVP----FRAGETTLLPAPMFHATGWAHLTLA--- 269
Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA------LYKYKLAWMNMG 359
M L T+ V RR FD + K+K +
Sbjct: 270 ---MALGSTV------VL------------------RRRFDPEATLEDIAKHKATAL--- 299
Query: 360 YKQREASP-----LADLLAFRKVKARLG-GRLRLVISGGAPLSTEV-----EEFLRVTCC 408
P + DL +V A+ L+++ G+ LS E+ E F V
Sbjct: 300 ----VVVPVMLSRILDLGP--EVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLY- 352
Query: 409 AFLVQGYGLTETCGPTTVCFPDEMCMV-GTAGPVSVYSELRLEEVPEMGYSPLDD----- 462
YG TE T+ P+++ GT G +++ LD+
Sbjct: 353 ----NLYGSTE-VAFATIATPEDLAEAPGTVGRPPKGVTVKI----------LDENGNEV 397
Query: 463 PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
P G + V F GY D + IIDG +GD+G +G++ + R ++I
Sbjct: 398 PRGVVGRIFVGNGFPFEGYTDGRD---KQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMI- 453
Query: 521 ISQGEYV-------ALEYLENVYCVAPI-IEDP 545
+S GE V L +V A I ++D
Sbjct: 454 VSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDE 486
|
Length = 549 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+E+++ + + LRA G PG RV + + P+ V A AC + V L L P
Sbjct: 12 TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71
Query: 138 GAVNFILDHAE 148
+ ILD +
Sbjct: 72 QDLEHILDDSG 82
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 22/169 (13%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y E ++ +LQ L A G G V + N ++E A + L + +P+ L
Sbjct: 29 SYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAA 88
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
V +IL A + V ++ F ++ A + V
Sbjct: 89 DEVAYILGDAGAKLLLVDEE---------------------FDAIVALETPKIV-IDAAA 126
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
+ L G + P ++ +MYTSGT+ PKGV+ ++ +
Sbjct: 127 QADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLH 175
|
Length = 497 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
+P + TI+++SG+ G+PKGV+L+H I + + + + DDV LS LP
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILSSLPF 832
Query: 276 AH 277
H
Sbjct: 833 FH 834
|
Length = 1146 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
W + L + E P ++ +++TSGTSGDPK V TH +A +GV L +F
Sbjct: 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVA--SAGVML-AQRF 188
Query: 260 EDKMTVDDV-YLSFLPLAH 277
+ DDV Y+S +PL H
Sbjct: 189 G--LGPDDVCYVS-MPLFH 204
|
Length = 529 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 39/187 (20%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
++ E+ +V + +ALRA G PG RV Y N P+ V AM A +L I C P +
Sbjct: 116 SWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDF-- 173
Query: 135 LGPGAVNFILDH-AEI--------DFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
G V LD +I D K KV EL + P S + + V+V
Sbjct: 174 -GVQGV---LDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP---SLEHV-VVV 225
Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFN--ICTIMYTSGTSGDP 235
+ A W++FL + E+E P PF+ + I+Y+SGT+G P
Sbjct: 226 PYL-----GPAAAAAALPGALLWEDFLAPAEAAELEFE-PVPFDHPLW-ILYSSGTTGLP 278
Query: 236 KGVVLTH 242
K +V H
Sbjct: 279 KCIVHGH 285
|
Length = 655 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
+ QP + I++TSG+ G PKGVV +H+++ V + D T +D ++S L
Sbjct: 359 QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIAD-----FTPNDRFMSAL 413
Query: 274 PLAH 277
PL H
Sbjct: 414 PLFH 417
|
Length = 718 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 30/208 (14%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+E+ E ++ R+ G + G V I+ N +++E A L + L P
Sbjct: 26 TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP 85
Query: 138 GAVNFILDH--AEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
+I+D A V L C R R+++ G
Sbjct: 86 AEAAYIVDDSGARALITSAAKLDVARALLKQC-PGVRHRLVL---------DGDGELEGF 135
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN---ICTIM-YTSGTSGDPKGVV--LTHETIATFV 249
Y+ + LP P + T M Y+SGT+G PKG+ L + T +
Sbjct: 136 VGYA----------EAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPL 185
Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
+ D VYLS PL H
Sbjct: 186 PLTAFLQRLW--GFRSDMVYLSPAPLYH 211
|
Length = 511 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y E+ E Q+ + LRA G PG RVG+ V A+ A VPL +
Sbjct: 14 SYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSYPA 73
Query: 138 GAVNFILDHAE 148
+ ++L+ AE
Sbjct: 74 ERLQYMLEDAE 84
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTC---CAFLVQGYGLTETCGPTTVCF-----PDEMCMVG 436
L+L+ GGA LS + R+ C L Q +G+ E V + DE
Sbjct: 302 LKLLQVGGARLSETLAR--RIPAELGCQ-LQQVFGMAEG----LVNYTRLDDSDERIFTT 354
Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 495
P+S E+ V + +PL G + RG F GYYK+P + +G++
Sbjct: 355 QGRPMSPDDEVW---VADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFY 411
Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
+GD+ I P+G + ++ R+K+ I GE +A E +EN
Sbjct: 412 CSGDLVSIDPDGYITVVGREKDQIN-RGGEKIAAEEIEN 449
|
Length = 536 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 47/209 (22%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
V T++++ + Q+ + G G V + G N P+ + A A +PL
Sbjct: 25 NDEVL-TWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPL 83
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
L + +L +DF V L + F++LT+
Sbjct: 84 NPQLPQPLLEELLPSLTLDFALV--------LEGENT----------FSALTS------- 118
Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS- 250
LHL V + QP + T+ TSG++G PK V T + A S
Sbjct: 119 ------------LHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQ--AHLASA 164
Query: 251 -GVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
GV L L F T D +L LPL H+
Sbjct: 165 EGV-LSLMPF----TAQDSWLLSLPLFHV 188
|
Length = 458 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 52/190 (27%), Positives = 70/190 (36%), Gaps = 21/190 (11%)
Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--C 421
A PL D A L + SGGA S V E L + L G +ET
Sbjct: 280 ARPLLD--ALEARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFG 337
Query: 422 GPTTVCF--PDEMCMVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
G TV T GP V E P G + RG + G
Sbjct: 338 GSGTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEP-------GSGEIGWIARRGH-IPLG 389
Query: 479 YYKNPDLTRES--IIDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
YYK+P+ T E+ IDG + GD ++ +G + ++ R I + GE V E +E
Sbjct: 390 YYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEE 448
Query: 535 VYCVAPIIED 544
P + D
Sbjct: 449 ALKAHPDVAD 458
|
Length = 533 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 25/173 (14%)
Query: 77 KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
+++ E+ + + L A G PG V + N + EA A L VP
Sbjct: 12 RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP------ 65
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQ-KEMAVQTG 194
VN+ EI ++ +D + L++ D + T L+ E+A
Sbjct: 66 ---VNWHFKPEEIAYIL-EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYR 121
Query: 195 IKPYS---------WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
I P W+ +L + + +P QP ++ +YTSGT+G PKGV
Sbjct: 122 ISPALLTPPAGAIDWEGWLAQQEPYDGPPVP-QPQSM---IYTSGTTGHPKGV 170
|
Length = 509 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 31/179 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY++++ EV SALRA G G RV IY + V AM AC + I ++
Sbjct: 85 TYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFAS 144
Query: 138 GAVNFILDHAEIDFVFVQDK-----KV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
++ +D A + D KV K LL AQ V +
Sbjct: 145 HSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHV-----------L 193
Query: 190 AVQTGIKP----------YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
V G+ P Y+ H +E L + I+YTSGT+G PKGV
Sbjct: 194 LVDRGLAPMRLIPGRDVDYAALRTQHEDAQVPVEWL--ESNEPSYILYTSGTTGKPKGV 250
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 22/172 (12%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--CGPTTVCFPDEMCMVGTA-- 438
LR + S GA S EV + L + LV G +ET G + T
Sbjct: 136 SLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGA---SATGKF 192
Query: 439 --GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG- 493
GP +V + EVP G + G+ GYYK+P+ T ++ IDG
Sbjct: 193 ELGPDTVVLDEDGSEVPP------GSGEVGWIARGGRVPL-GYYKDPEKTAKTFREIDGV 245
Query: 494 -WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
+ GD ++ +G + ++ R I + GE V E +E P + D
Sbjct: 246 RYAVPGDFARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDVAD 296
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 43/158 (27%), Positives = 56/158 (35%), Gaps = 60/158 (37%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQG------YGLTETCGPTTVCFPDEM------ 432
LR VIS GAP+ V E R A L YG TE P + E+
Sbjct: 290 LRRVISAGAPVPIAVIERFR----AMLPPDAEILTPYGATE-ALPISSIESREILFATRA 344
Query: 433 --------CMVG-------------TAGPVSVYSE-LRLE--EVPEMGYSPLDDPPCGEV 468
C VG + P+ + + LRL E+ GE+
Sbjct: 345 ATDNGAGIC-VGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI-------------GEI 390
Query: 469 CVRGKTLFSGYYKNPDLTRES-IIDG----WFHTGDIG 501
V G + YY P+ TR + I DG W GD+G
Sbjct: 391 VVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLG 428
|
Length = 552 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 25/203 (12%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ V + + L A G P RV + N V A+ A + L + P
Sbjct: 30 TYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAV---------P 80
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+N L AEI + + + +++ D + + + A V G P
Sbjct: 81 ALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDL--VGLGE-P 137
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL- 256
S + E P +P + YTSGT+G PKG V+ + V LF+
Sbjct: 138 ESAGPPI--------EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRV----LFMS 185
Query: 257 DQFEDKMTVDDVYLSFLPLAHIL 279
Q + +V L +PL H++
Sbjct: 186 TQAGLRHGRHNVVLGLMPLYHVI 208
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 110/522 (21%), Positives = 173/522 (33%), Gaps = 134/522 (25%)
Query: 19 PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKT 78
P P + L +P LN A ++ V GNR + W T
Sbjct: 14 PEQWPEFTFDLPQFQYPER---LNCAAELLDRHVHNGRGNR-------PCFRTFEETW-T 62
Query: 79 YKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
Y+++ + +I L G PG RV + AN P V A I V L
Sbjct: 63 YQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKAGAIVVTTMPLLRA 122
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ I+D A I +C LTA
Sbjct: 123 KELTTIVDKARITHA------------------------LCDKRLTAAD----------- 147
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
++ I +TSGT+G PKG + H I ++ D F
Sbjct: 148 -----------------------DVALIGFTSGTTGLPKGTMHFHRDI---LAICDAF-P 180
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY--YHGDLNALRDDLMELKPTL 315
+ + T DDV++ PLA + F G V + G L
Sbjct: 181 RHVLQPTPDDVFIGSPPLA---------FTFGLGGLVLFPLRFGASAVL----------- 220
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
LE+ P + A+ +++ + +P A
Sbjct: 221 ------------------LEQATP--PLLLKAIQEHRATILF-------TAPTAYRAMLI 253
Query: 376 KVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 434
KVKA LR +S G L +V +++ T ++ G G TE + +E
Sbjct: 254 KVKAFDISSLRKCVSAGETLPAKVWQDWYERTGLK-IIDGIGATEML-HIFISANEENAK 311
Query: 435 VGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
G G PV Y +++ + + G + VRG T Y + + +E + DG
Sbjct: 312 PGATGKPVPGYEARIVDD----QGNEVPRGEAGRLAVRGPT--GCRYLDDERQQEYVRDG 365
Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
W TGDI + +G + R ++I +S G +A +E+
Sbjct: 366 WNVTGDIFRQDEDGYFHYVARSDDMI-VSAGYNIAAPEVEDA 406
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 46/172 (26%)
Query: 385 LRLVISGGAPLS-TEVEEF--------LRVTCCAFLVQGYGLTET--------CG-PTTV 426
LR ++G P+ +VE+ LR ++ YG+ E CG V
Sbjct: 278 LRFALNGAEPIDPADVEDLLDAGARFGLRPEA---ILPAYGMAEATLAVSFSPCGAGLVV 334
Query: 427 CF--PDEMCMVGTAGPVSV------------YSELRLEEVPEMGYSPLDDPPCGEVCVRG 472
D + + A P + L + V E G L G + +RG
Sbjct: 335 DEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDG-QVLPPRGVGVIELRG 393
Query: 473 KTLFSGYYKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLI 519
+++ GY LT + I DGW TGD+G + G V + R K++I
Sbjct: 394 ESVTPGY-----LTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVI 440
|
Length = 545 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 6e-04
Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 24/177 (13%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
T+ E+ +V + +ALRA G PG RV Y N PQ V AM A ++ I C P +
Sbjct: 116 TWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDF-- 173
Query: 135 LGPGAVNFILD---HAEIDFVFVQD--------KKVKELLSPDCRSAQRLRVMVCFTSLT 183
+LD E +F D ++ ++ + LR +V L
Sbjct: 174 ----GARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLG 229
Query: 184 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF-NICTIMYTSGTSGDPKGVV 239
+ E G ++F + E+ PF + I+++SGT+G PK +V
Sbjct: 230 PRETEAPKIDG--ALDLEDFTAAAQAAELV-FEQLPFDHPLWILFSSGTTGLPKCIV 283
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 41/174 (23%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y+E+ E+V+ + + LR G +PG V + P+ V L+L L+ +
Sbjct: 485 SYREMREQVVALANLLRERGVKPGDSVAV---ALPRSVF-------LTLA---LHAIVEA 531
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM------VCFTSLTAEQKEMAV 191
GA LD PD RL++M + + A
Sbjct: 532 GAAWLPLDTGY----------------PD----DRLKMMLEDARPSLLITTADQLPRFAD 571
Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
+ ++ L + QP + I++TSG++G PKGV++ I
Sbjct: 572 VPDLTSLCYNAPLAPQGAAPL--QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAI 623
|
Length = 1296 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 18/64 (28%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS------------- 271
++YTSG++G PKGV ++H + F+ + + D L+
Sbjct: 98 VIYTSGSTGKPKGVEVSHRALVNFLLSM-----ARRPGLGASDRLLAVTTISFDISVLEL 152
Query: 272 FLPL 275
LPL
Sbjct: 153 LLPL 156
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
TY+E+Y EV + + L++ G + G RV IY P+ AM AC
Sbjct: 80 TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLAC 123
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI 519
G V V+ F GY L RE DGW D+G G + I+ R+KN+I
Sbjct: 334 GTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI 387
|
Length = 487 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
TY E+ E ++ + L A G G V +YG P A+ AC
Sbjct: 18 TYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILAC 61
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 77 KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
T+ E+ EE + + L+ G G RV + P+ + C L + +P LG
Sbjct: 1 WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
P + + L+ A + ++ FTS T +M + T
Sbjct: 61 PKDIRYRLERAGARAIVTSADDP---------------ALLYFTSGTTGLPKMVLHT 102
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
T+ ++ + ++ +ALR G E G RVG+Y P+ A A L + VPL GP
Sbjct: 8 TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67
Query: 138 GAVNFILDHAE 148
AV L +
Sbjct: 68 DAVEHRLRDSG 78
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 24/150 (16%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
LR+ I AP EV+ + + + Y +E G T + D + G+ G +V
Sbjct: 264 LRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGK-AVL 322
Query: 445 SELRL-----EEVP--EMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GW 494
E+R+ E+P E+G Y +D P F Y+ +P+ T + GW
Sbjct: 323 GEVRILDEDGNELPPGEIGTVYFEMDGYP-----------FE-YHNDPEKTAAARNPHGW 370
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
GD+G + +G + + DRK ++I IS G
Sbjct: 371 VTVGDVGYLDEDGYLYLTDRKSDMI-ISGG 399
|
Length = 502 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 39/209 (18%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y+++ I +AL+A A G R + + P +V A C +I VP Y P
Sbjct: 42 SYRDLDLRARTIAAALQAR-ASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYP---P 97
Query: 138 GAVN--------FILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
+ I+ AE + LL + +A ++C +L E
Sbjct: 98 ESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAE- 156
Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPP-QPFNICTIMYTSGTSGDPKGVVLTHETIATF 248
+W E P QP +I + YTSG++ PKGV ++H
Sbjct: 157 ---------AWQE-------------PALQPDDIAFLQYTSGSTALPKGVQVSH---GNL 191
Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
V+ L F + DDV +S+LPL H
Sbjct: 192 VANEQLIRHGFGIDLNPDDVIVSWLPLYH 220
|
Length = 4334 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 222 ICTIMYTSGTSGDPKGVVLTHE--TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
+YTSGT+G PK +++H A V G L DDV LPL H
Sbjct: 83 PAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKP-------DDVLYLCLPLYH 133
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 54/199 (27%), Positives = 78/199 (39%), Gaps = 45/199 (22%)
Query: 93 LRASGA------EPGCRVGIYGANCPQWVE-------AMEACNALSLICVPLYDTLGPGA 139
RA GA +PG RV I PQ ++ A+ A I VPL+D PG
Sbjct: 65 NRAVGARLQQVTKPGDRVAIL---APQNLDYLIAFFGALYAGR----IAVPLFDPAEPGH 117
Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199
V + HA +D D +L+ SA+ +R F + A+++ + P
Sbjct: 118 VGRL--HAVLD-----DCTPSAILTTT-DSAEGVRKF--FRARPAKERPRVIAVDAVPDE 167
Query: 200 WDEFLHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
V + P I + YTSG++ P GV +TH + T V V L+
Sbjct: 168 ---------VGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEG 218
Query: 259 FEDKMTVDDVYLSFLPLAH 277
E V S+LP H
Sbjct: 219 QEGDRGV-----SWLPFFH 232
|
Length = 631 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 43/179 (24%), Positives = 67/179 (37%), Gaps = 19/179 (10%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y+++ V + L SG PG RV + + ++V A+ A + L+ VPL D P
Sbjct: 45 SYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPALP 103
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
A + A V + D P R+ R ++ + +
Sbjct: 104 IAEQRVRSQAAGARVVLIDA-----DGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSV-- 156
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI----CTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
HL E P + IM+T GT+G PK V TH IA+ V +
Sbjct: 157 -------HLDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAI 208
|
Length = 534 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 25/172 (14%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
Y E+ ++ AL G P VG+ + V A+ A VPL D P
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPL-DPEYP 596
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
AE ++D V+ LLS + L A + + + +P
Sbjct: 597 ---------AERLAYMLEDSGVQLLLSQ--------SHLGRKLPLAAGVQVLDLD---RP 636
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
+W E G E P N+ ++YTSG++G PKG H ++ +
Sbjct: 637 AAWLE----GYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRL 684
|
Length = 5163 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 35/160 (21%)
Query: 388 VISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
V+ GG P V + + +V+ YG++ET G C D + + G
Sbjct: 156 VLVGGGPAPAPVLDAAAAAGIN----VVRTYGMSETSGG---CVYDGVPLDGV------- 201
Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504
+R+E+ G + + G TL GY +NP GWF T D+G L
Sbjct: 202 -RVRVED--------------GRIALGGPTLAKGY-RNPVDPDPFAEPGWFRTDDLG-AL 244
Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
+GV+ ++ R + I + G V + +E P + D
Sbjct: 245 DDGVLTVLGRADDAIS-TGGLTVLPQVVEAALATHPAVAD 283
|
Length = 358 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.003
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
TY+E++ EV + +AL++ G + G RV IY P+ AM AC
Sbjct: 100 TYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143
|
Length = 637 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 30/173 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+++ E+ ++ + ++ + +YG P + A +P+ DT P
Sbjct: 27 TYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV-DTSIP 85
Query: 138 GA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
+ I++ A + V LS D Q + T E A +G
Sbjct: 86 SERIEMIIEAAGPELVIH-----TAELSIDAVGTQII---------TLSALEQAETSGG- 130
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
P S+D V + I+YTSG++G+PKGV ++H+ + +F
Sbjct: 131 PVSFDH-----AVKGDDNY--------YIIYTSGSTGNPKGVQISHDNLVSFT 170
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y E+ E+ ++ + L G +PG RV P+ V A+ A + I VPL+ GP
Sbjct: 2 SYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFGP 61
Query: 138 GAVNFILDHAEIDFVF 153
A+ + L H+ V
Sbjct: 62 KAIEYRLGHSGAKVVV 77
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 385 LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVS 442
+R+ I+GG L+ E ++ + YG TET C E G A P+
Sbjct: 2450 VRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVPIG 2509
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------DG--W 494
R+ + + + + GE+ V G L GY+ P LT E + DG
Sbjct: 2510 RVVGARVAYILDADLALVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRL 2569
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKI 521
+ TGD+ ++ +G+V+ + R + +KI
Sbjct: 2570 YRTGDLVRLRADGLVEYVGRIDHQVKI 2596
|
Length = 4334 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 20/179 (11%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL---ICVPLYDT 134
T E+ +V ++ +AL A G E G + I + P V A+ A+ L + V + D+
Sbjct: 210 TLSELRSQVSRVANALDALGFEKGDAIAI---DMPMNVHAVIIYLAIILAGCVVVSIADS 266
Query: 135 LGPGAVNFILDHAEIDFVFVQDKKV---KEL-LSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
P + L ++ +F QD V K + L A+ + +V L A+ K +
Sbjct: 267 FAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIV----LPADGKSVR 322
Query: 191 VQTGIKPYSWDEFL----HLGKVNEMEILPPQPFNICT-IMYTSGTSGDPKGVVLTHET 244
V+ SWD+FL L + +E + + QP T I+++SGT+G+PK + T T
Sbjct: 323 VKLREGDMSWDDFLARANGLRRPDEYKAVE-QPVEAFTNILFSSGTTGEPKAIPWTQLT 380
|
Length = 728 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
TY+E++ EV + + L++ G + G RV IY P+ AM AC
Sbjct: 90 TYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLAC 133
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 594 | |||
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.94 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.93 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.93 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.89 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.79 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.59 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.55 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.93 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.26 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.86 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.84 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.72 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 97.62 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 93.96 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 93.71 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 92.78 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 87.76 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 84.41 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 83.12 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 82.0 |
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-76 Score=650.59 Aligned_cols=550 Identities=51% Similarity=0.925 Sum_probs=447.8
Q ss_pred CcccccccccCCCCCCCCCCCccccccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHH
Q 007672 2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKE 81 (594)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~e 81 (594)
|-|-.+++.+++..+..|.++++||+.....+++...+.+.|+.++|+++++++||++|+.+....++..++++.+||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~e 84 (666)
T PLN02614 5 KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQE 84 (666)
T ss_pred ceeEEEecccccCCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHH
Confidence 44567889999999999999999999987777776567778999999999999999999986411022335677899999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHH
Q 007672 82 VYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE 161 (594)
Q Consensus 82 l~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~ 161 (594)
|.++++++|++|+++|+++||+|+|+++|+++++++++||+++|++++|+++.++++++.+++++++++++|++.+....
T Consensus 85 l~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 164 (666)
T PLN02614 85 VYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISE 164 (666)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876554
Q ss_pred HhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeec
Q 007672 162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241 (594)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~t 241 (594)
+..........++.++.++.............+....+|++++..............++|+++++|||||||.||||++|
T Consensus 165 ~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lt 244 (666)
T PLN02614 165 LFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244 (666)
T ss_pred HHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEe
Confidence 43322211223566766654321111111112233467887775432222122234679999999999999999999999
Q ss_pred cHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecCChHHHHHHHhhhcCeEEEechH
Q 007672 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR 321 (594)
Q Consensus 242 h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~ 321 (594)
|+++++.+......+......+..+|++++++|++|.+++.....++..|+++++.+.++..+++.|++++||+++++|.
T Consensus 245 h~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~ 324 (666)
T PLN02614 245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPR 324 (666)
T ss_pred cHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHH
Confidence 99999887665433211112467889999999999999987666678899999988779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHH
Q 007672 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE 401 (594)
Q Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~ 401 (594)
+++.+.............++++++.++.+.+...+..+.......+..+.+.++++++.++++||.+++||+++++.+.+
T Consensus 325 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~ 404 (666)
T PLN02614 325 VLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVES 404 (666)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHH
Confidence 99999887766666666677788888887777666665555556777888889999999999999999999999988655
Q ss_pred HHHHhc-CCceEeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccC
Q 007672 402 FLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480 (594)
Q Consensus 402 ~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~ 480 (594)
+.+.+ ++.++++||+||+++.++...+......+++|+|+|+++++|+|+++++..+++.|+.|||+|+||+++.|||
T Consensus 405 -~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~ 483 (666)
T PLN02614 405 -FLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYY 483 (666)
T ss_pred -HHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCccccccc
Confidence 44445 5899999999999876655444333335899999999999999855554455667799999999999999999
Q ss_pred CCchhhhhcccCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCC
Q 007672 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCS 552 (594)
Q Consensus 481 ~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (594)
++|+.|++.|.||||+|||+|++|+||+|+|.||.||+||+++|++|+|.+||++|.+||.|.+|+|+|..+
T Consensus 484 ~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~ 555 (666)
T PLN02614 484 KREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSF 555 (666)
T ss_pred CCHHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCC
Confidence 999999999999999999999999999999999999999977899999999999999999999999999874
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-76 Score=647.57 Aligned_cols=544 Identities=50% Similarity=0.886 Sum_probs=444.8
Q ss_pred cccccCCCCCCCCCCCccccccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHH
Q 007672 7 QVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEV 86 (594)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~ 86 (594)
-+++-+-.++.+|.++++||+....+.+...++...|+.++|.++++++|+++|+.+....++..|+++++||+||.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v 87 (660)
T PLN02861 8 KVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAA 87 (660)
T ss_pred eeccCCCCCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHH
Confidence 34555557778899999999998777777677788899999999999999999997531113345678899999999999
Q ss_pred HHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhccc
Q 007672 87 LQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD 166 (594)
Q Consensus 87 ~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 166 (594)
+++|++|.++|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+....+....
T Consensus 88 ~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~ 167 (660)
T PLN02861 88 IRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCL 167 (660)
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877655443322
Q ss_pred ccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHH
Q 007672 167 CRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246 (594)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~ 246 (594)
......++.++.+++.................+|+++...... .....+..++|+++++|||||||.||||++||++++
T Consensus 168 ~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~ 246 (660)
T PLN02861 168 PKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSL-DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAII 246 (660)
T ss_pred hhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcc-cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHH
Confidence 2111246677777653221111111122334678777654321 112234468999999999999999999999999999
Q ss_pred HHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHH
Q 007672 247 TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326 (594)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l 326 (594)
+.+......+......+..+|++++++|++|++++...+.+++.|+++++...++..+++.|++++||+++++|.+++.|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l 326 (660)
T PLN02861 247 AEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRI 326 (660)
T ss_pred HHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHH
Confidence 88776554331111124678999999999999998776678999999998877999999999999999999999999999
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHh
Q 007672 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT 406 (594)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~ 406 (594)
.............+++.++.++.+.+...+..+.......+..+.++++++++.+|+++|.+++||+++++++.+ +.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~ 405 (660)
T PLN02861 327 YTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRV 405 (660)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHH
Confidence 988877777777888999999998888877666544445677888899999999999999999999999999865 4445
Q ss_pred cC-CceEeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchh
Q 007672 407 CC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485 (594)
Q Consensus 407 ~~-~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~ 485 (594)
++ ..++++||+||+++.++..........+++|+|+++++++|+|.++.+....+.+..|||+|+||+++.|||++|+.
T Consensus 406 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~ 485 (660)
T PLN02861 406 TSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDL 485 (660)
T ss_pred HcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHH
Confidence 55 47999999999987666544333333489999999999999985444433333446899999999999999999999
Q ss_pred hhhcccCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCC
Q 007672 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCS 552 (594)
Q Consensus 486 ~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (594)
+.+.|.||||+|||+|++|+||+|++.||+||+|++++|++|+|.+||++|.+||.|.+|+|+|.++
T Consensus 486 T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~ 552 (660)
T PLN02861 486 TEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF 552 (660)
T ss_pred HHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC
Confidence 9999999999999999999999999999999999977899999999999999999999999999874
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-76 Score=605.97 Aligned_cols=526 Identities=45% Similarity=0.739 Sum_probs=474.9
Q ss_pred Ccccccccc--CCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCC
Q 007672 22 GPVYRNLLA--SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99 (594)
Q Consensus 22 ~~~~r~~~~--~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~ 99 (594)
++.+|+... ..+++..+....|+++.|++.+..+|+.+++-.....+ ..++|+++||+|..+++..++..|+++|++
T Consensus 53 ~~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~ 131 (691)
T KOG1256|consen 53 DGSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVK 131 (691)
T ss_pred CCceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCC
Confidence 378998888 46667777899999999999999999999998872222 578999999999999999999999999999
Q ss_pred CCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEc-chhHHHHhccccc-ccccccEEE
Q 007672 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ-DKKVKELLSPDCR-SAQRLRVMV 177 (594)
Q Consensus 100 ~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~-~~~~~~~~~~~~~-~~~~~~~v~ 177 (594)
+++.|+|+.-|++||++..+||...|+++|||+...+++.+.++++.+.+.++|++ .+....+++.... ..+.++.++
T Consensus 132 ~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI 211 (691)
T KOG1256|consen 132 EDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAII 211 (691)
T ss_pred CCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEE
Confidence 99999999999999999999999999999999999999999999999999999999 4555555554443 478899999
Q ss_pred EecCCcHHHHHHHhhCCcceeeHHHHHhccccccccc-CCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhh
Q 007672 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256 (594)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~ 256 (594)
.++....+........++..++|+++.+.+....... .+..++|.|.|.|||||||.||||++||+|+++.+.......
T Consensus 212 ~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~ 291 (691)
T KOG1256|consen 212 QLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLS 291 (691)
T ss_pred EecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhh
Confidence 9999999888888999999999999999987655555 488999999999999999999999999999999665432222
Q ss_pred ccccCC-CCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHH
Q 007672 257 DQFEDK-MTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 335 (594)
Q Consensus 257 ~~~~~~-~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~ 335 (594)
...... ....|++++++||.|++...+..+.++.|+.+.+..+|+..+.+.+++.+||.+.++|.+|+++.+.+++...
T Consensus 292 ~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~ 371 (691)
T KOG1256|consen 292 AAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQ 371 (691)
T ss_pred hcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHh
Confidence 111112 2347999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHH-HHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEee
Q 007672 336 ELRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQG 414 (594)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~ 414 (594)
...+++++++++|...+. ..+..|.... ..+.++++.++++++.+|.++|.+++|++|+++++...++..+|+.|+++
T Consensus 372 ~sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eG 450 (691)
T KOG1256|consen 372 KSGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEG 450 (691)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeec
Confidence 999999999999999888 5577776664 78999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCC
Q 007672 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDG 493 (594)
Q Consensus 415 yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g 493 (594)
||+||+++.++...+.+. ..+++|.|+|+++++++|+++.++...+ ..|||+|+|++||.||++||+.|.+++ .||
T Consensus 451 YGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~e~ideDG 527 (691)
T KOG1256|consen 451 YGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADG--SKGEICVRGPNVFMGYYKDPEKTAEAIDEDG 527 (691)
T ss_pred ccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCC--CcceEEEecchhceeccCChHHHhhhhcccc
Confidence 999999977777777666 5599999999999999999999888776 479999999999999999999999999 999
Q ss_pred ccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCC
Q 007672 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCS 552 (594)
Q Consensus 494 ~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (594)
|++|||+|+++++|.|++.||.+++||++.|++|.|+.||++..+.+-|.+.+|.|...
T Consensus 528 WLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~ 586 (691)
T KOG1256|consen 528 WLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSL 586 (691)
T ss_pred ccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcc
Confidence 99999999999999999999999999999999999999999999999999999998664
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-74 Score=633.92 Aligned_cols=551 Identities=79% Similarity=1.320 Sum_probs=461.7
Q ss_pred CCcccccccccCCCCCCCCCCCccccccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHH
Q 007672 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYK 80 (594)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ 80 (594)
||-.+.++.+..++++++|.++++||+......++..++..+|+.++|.++++++|+++|+.+....++..++++.+||.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~ 80 (660)
T PLN02430 1 MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYK 80 (660)
T ss_pred CCceeeeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHH
Confidence 78888899888877789999999999988767776667889999999999999999999997641113444667789999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHH
Q 007672 81 EVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160 (594)
Q Consensus 81 el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 160 (594)
||.++++++|++|.+.|+++||+|+|+++|+++|+++++||+++|++++|+++..+++++.++++.++++++|+++....
T Consensus 81 el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~ 160 (660)
T PLN02430 81 EVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK 160 (660)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876544
Q ss_pred HHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEee
Q 007672 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240 (594)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~ 240 (594)
..........+.++.++.+++............+....+|++++..+........+..++++++++|||||||.||||++
T Consensus 161 ~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~l 240 (660)
T PLN02430 161 ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240 (660)
T ss_pred HHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEe
Confidence 33322222234566777776543221111112233456888887655333222334468999999999999999999999
Q ss_pred ccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecCChHHHHHHHhhhcCeEEEech
Q 007672 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320 (594)
Q Consensus 241 th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P 320 (594)
||+++++.+......+......+..+|++++++|++|.++....+.++..|+++++...++..+++.|++++||++.++|
T Consensus 241 th~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP 320 (660)
T PLN02430 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVP 320 (660)
T ss_pred ecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecH
Confidence 99999988766533221111246788999999999999998876777899999988877899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHH
Q 007672 321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400 (594)
Q Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~ 400 (594)
.+++.+.+..........++++.+++++.+.+...+..+.......+.++.+.+++++..+|+++|.+++||+++++++.
T Consensus 321 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~ 400 (660)
T PLN02430 321 RVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIE 400 (660)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHH
Confidence 99999999888888888889999999999999888877665555567788888999999999999999999999999997
Q ss_pred HHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccC
Q 007672 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480 (594)
Q Consensus 401 ~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~ 480 (594)
+.++...++.++++||+||+++..+...+......+++|.|.+++++++++.++.+..+.+.+..|||+|+|++++.||+
T Consensus 401 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~ 480 (660)
T PLN02430 401 EFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY 480 (660)
T ss_pred HHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCcccccc
Confidence 77766545789999999999887766655444445899999999999999866665566666678999999999999999
Q ss_pred CCchhhhhcccCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecC
Q 007672 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSC 551 (594)
Q Consensus 481 ~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~ 551 (594)
++++.+.+.|.||||+|||+|++|+||+|++.||.+|+|++++|++|+|.+||++|.+||.|.+|+|+|..
T Consensus 481 ~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~ 551 (660)
T PLN02430 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS 551 (660)
T ss_pred CChHHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC
Confidence 99999999999999999999999999999999999999998789999999999999999999999999965
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-74 Score=634.74 Aligned_cols=524 Identities=40% Similarity=0.662 Sum_probs=433.3
Q ss_pred CCCCCccccccccCCCCCC---CCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHH
Q 007672 18 KPSVGPVYRNLLASNGFPS---VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR 94 (594)
Q Consensus 18 ~~~~~~~~r~~~~~~~~~~---~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~ 94 (594)
+.+.+.+||+...+.++-+ .++...++.++|+++++++||++|+.+....++..+.++.+||+||.++++++|++|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~ 96 (651)
T PLN02736 17 QTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLV 96 (651)
T ss_pred CCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHH
Confidence 3388999998765544432 3456789999999999999999999542000344456788999999999999999999
Q ss_pred HcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhccccccccccc
Q 007672 95 ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLR 174 (594)
Q Consensus 95 ~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 174 (594)
++|+++||+|+|+++|+++++++++||+++|++++|+++..+.+++.+++++++++++|++.+....+..... ..+.++
T Consensus 97 ~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~ 175 (651)
T PLN02736 97 QHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS-EIPSVR 175 (651)
T ss_pred HhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhh-cCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999876655543322 345566
Q ss_pred EEEEecCCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhh
Q 007672 175 VMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254 (594)
Q Consensus 175 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~ 254 (594)
.++..+..................+|+++.+.............++++++++|||||||.||||++||++++..+.....
T Consensus 176 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~ 255 (651)
T PLN02736 176 LIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSL 255 (651)
T ss_pred EEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHh
Confidence 77766543221111111223345678888765432222233457899999999999999999999999999998888766
Q ss_pred hhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHH
Q 007672 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334 (594)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~ 334 (594)
.+ ++.++|++++.+|++|.+++...+.++..|+++++.+.++..+++.|++++||+++++|.+++.+.+......
T Consensus 256 ~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~ 330 (651)
T PLN02736 256 ST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAV 330 (651)
T ss_pred cc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHH
Confidence 55 6788999999999999999987788899999999988889999999999999999999999999999888777
Q ss_pred HhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEee
Q 007672 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQG 414 (594)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~ 414 (594)
.....+++.+++++...+...+..+. ...+.++++.+++++..+++++|.+++||+++++++.+++.+.+|+.+++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~ 407 (651)
T PLN02736 331 KESGGLKERLFNAAYNAKKQALENGK---NPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEG 407 (651)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHcCC---CCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEE
Confidence 77788888899888777766555442 223456778888888889899999999999999999999998889999999
Q ss_pred ecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCC-CCCCCCceEEEccCCcccccCCCchhhhhcc-cC
Q 007672 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP-LDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID 492 (594)
Q Consensus 415 yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~-~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~ 492 (594)
||+||+++.++....... ..+++|+|+|+++++|+|.+++.... ..++..|||+++||+++.|||++++.+++.| .|
T Consensus 408 YG~TE~~~~~~~~~~~~~-~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~d 486 (651)
T PLN02736 408 YGMTETSCVISGMDEGDN-LSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDED 486 (651)
T ss_pred echHHhchheeccCCCCC-CCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccC
Confidence 999999887665554433 34899999999999999843322111 1122479999999999999999999999999 79
Q ss_pred CccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecC
Q 007672 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSC 551 (594)
Q Consensus 493 g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~ 551 (594)
|||+|||+|++|+||+|++.||.||+||+++|++|+|.+||++|.+||.|.+|+|+|..
T Consensus 487 gw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~ 545 (651)
T PLN02736 487 GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDS 545 (651)
T ss_pred CCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecC
Confidence 99999999999999999999999999997689999999999999999999999999854
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-71 Score=609.92 Aligned_cols=513 Identities=27% Similarity=0.400 Sum_probs=417.5
Q ss_pred CCCccccccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHc---
Q 007672 20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS--- 96 (594)
Q Consensus 20 ~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~--- 96 (594)
.+|.+||....... .......|+.++|.++++++|+++|+++. + .+..|+++||+||.+++.++|++|.+.
T Consensus 41 ~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~ 114 (746)
T PTZ00342 41 NESSVYCMKDHKKK--SSLYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFFKKVLSFSHSLNTYEGK 114 (746)
T ss_pred CCCCceecCchhhc--ccccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHHHHHHHHHHHHHHHhhc
Confidence 66779997776666 33355789999999999999999999753 2 122468999999999999999999974
Q ss_pred CCCCC-----------CEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcc
Q 007672 97 GAEPG-----------CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165 (594)
Q Consensus 97 Gi~~g-----------d~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~ 165 (594)
|+++| |+|+|+++|+++|+++.+||+++|+++||+++.++++++.++|++++++++|++.+..+.+...
T Consensus 115 Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~ 194 (746)
T PTZ00342 115 GIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLER 194 (746)
T ss_pred CCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHh
Confidence 99998 9999999999999999999999999999999999999999999999999999987776665443
Q ss_pred cccccccccEEEEecCCcHH-------------------H--------------------------------------HH
Q 007672 166 DCRSAQRLRVMVCFTSLTAE-------------------Q--------------------------------------KE 188 (594)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~-------------------~--------------------------------------~~ 188 (594)
. ...+.++.+++++..... . ..
T Consensus 195 ~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (746)
T PTZ00342 195 K-NELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKE 273 (746)
T ss_pred h-ccCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHH
Confidence 2 334677788887653210 0 00
Q ss_pred HHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcE
Q 007672 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV 268 (594)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~ 268 (594)
.....+.....|+++.+.. ..........++++++++|||||||.||||++||+++++.+....... .......++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~~~~~d~ 349 (746)
T PTZ00342 274 KAKKLGISIILFDDMTKNK-TTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFKKYNPKT 349 (746)
T ss_pred HhhcCCCEEEEHHHHHhhc-ccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---cccCCCCCe
Confidence 0001112233455544332 111222345689999999999999999999999999999876653321 001234589
Q ss_pred EEEecChhHHHHHHHHHHhhhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 007672 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348 (594)
Q Consensus 269 ~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (594)
+++++|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|.+++.|...........+++++.++.++
T Consensus 350 ~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a 429 (746)
T PTZ00342 350 HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKI 429 (746)
T ss_pred EEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 99999999999998777889999999998779999999999999999999999999999888877777778888888888
Q ss_pred HHHHHHHHhhccCCCCcchHHHHH--hhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceec
Q 007672 349 YKYKLAWMNMGYKQREASPLADLL--AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426 (594)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~ 426 (594)
.+.+..... +. ....++.+ .++++++.+|++||.+++||+++++++.+++...+|+.++++||+||+++..+.
T Consensus 430 ~~~~~~~~~-~~----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~ 504 (746)
T PTZ00342 430 LSLRKSNNN-GG----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFV 504 (746)
T ss_pred HHHHHHhhc-CC----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeee
Confidence 877766432 21 23344443 588899999999999999999999999999998889999999999999887666
Q ss_pred cCCCCccccCccccCc-cCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEc
Q 007672 427 CFPDEMCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL 504 (594)
Q Consensus 427 ~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~ 504 (594)
..+... ..+++|.|+ |+++++|+|.++..... ....|||+++||+++.|||++|+.|+++| .||||+|||+|++|
T Consensus 505 ~~~~~~-~~gsvG~p~~pg~e~ki~d~~~~~~~~--~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d 581 (746)
T PTZ00342 505 QHADDN-NTESIGGPISPNTKYKVRTWETYKATD--TLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQIN 581 (746)
T ss_pred ccCCCC-CcccccCcCCCcEEEEEecccccccCC--CCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEEC
Confidence 555443 348999998 99999999844322222 22579999999999999999999999999 69999999999999
Q ss_pred CCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecC
Q 007672 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSC 551 (594)
Q Consensus 505 ~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~ 551 (594)
+||+|++.||.+|+|++++|++|+|.+||++|.+||.|.+|+|+|..
T Consensus 582 ~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~ 628 (746)
T PTZ00342 582 KNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDD 628 (746)
T ss_pred CCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccC
Confidence 99999999999999998789999999999999999999999999965
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-71 Score=580.81 Aligned_cols=483 Identities=35% Similarity=0.576 Sum_probs=404.5
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
...++...+.++++.+|+.+|+... ..+.|+.+||+|+.+++..+|.+|++.|+.+||+|+|++.|+++|+++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~ 88 (613)
T COG1022 14 EIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADL 88 (613)
T ss_pred hcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4578999999999999998898865 46888999999999999999999999999779999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHH---HHH-hh-CC
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK---EMA-VQ-TG 194 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~-~~-~~ 194 (594)
||+.+|++.||+++..+++++.++|++++++++|++..............++.........+...... ... .. ..
T Consensus 89 a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (613)
T COG1022 89 AILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPD 168 (613)
T ss_pred HHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhcccccccc
Confidence 99999999999999999999999999999999999996655443333322222111111111000000 000 00 00
Q ss_pred cceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCC-CCCCcEEEEec
Q 007672 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLSFL 273 (594)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 273 (594)
.+...+ .+... .......+..++|+|.|+|||||||.||||++||+|+++++..+...+ . ..++|++++.+
T Consensus 169 ~~~~~~-~~~~~--~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-----~~~~~~d~~LsfL 240 (613)
T COG1022 169 EGISLF-LIDSA--GLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-----PPIGPGDRVLSFL 240 (613)
T ss_pred ccchhh-hhccc--ccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-----CCCCCCcEEEEeC
Confidence 111111 11111 111222567899999999999999999999999999999999998877 5 78999999999
Q ss_pred ChhHHHHHHHHHHhhhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007672 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (594)
Q Consensus 274 pl~~~~~~~~~l~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (594)
|+.|++...+.......++..++...++..++..++.++||+++++|.+|+.+.+.+.++....+..++.++.++.+.+.
T Consensus 241 PlaHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~ 320 (613)
T COG1022 241 PLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAY 320 (613)
T ss_pred cHHHHHHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 99999999875444444555555566999999999999999999999999999999999999999999899999988764
Q ss_pred HHHh---hccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCC
Q 007672 354 AWMN---MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430 (594)
Q Consensus 354 ~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~ 430 (594)
.... .+..........+++.|+++++.+|.++|++++||+++++++..+++.. |+++..+||+||+++++++++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~~ 399 (613)
T COG1022 321 KKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPPD 399 (613)
T ss_pred HHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEcccc
Confidence 4332 2222333344578899999999999999999999999999999999986 89999999999999999999888
Q ss_pred CccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcE
Q 007672 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV 509 (594)
Q Consensus 431 ~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l 509 (594)
.... +++|.|+|+++++|+| .|||+||||+||.|||++|+.|+++| .||||+|||+|.+|++|+|
T Consensus 400 ~~~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L 465 (613)
T COG1022 400 RFVL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYL 465 (613)
T ss_pred Cccc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcE
Confidence 8776 9999999999999999 59999999999999999999999999 7999999999999999999
Q ss_pred EEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeec
Q 007672 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVS 550 (594)
Q Consensus 510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~ 550 (594)
++.||.+|+|+.++|++|.|+.||+.+.++|.|.+++|+|.
T Consensus 466 ~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~ 506 (613)
T COG1022 466 VITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGD 506 (613)
T ss_pred EEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEec
Confidence 99999999999999999999999999999999999999993
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-72 Score=585.29 Aligned_cols=482 Identities=26% Similarity=0.370 Sum_probs=386.0
Q ss_pred CcHHHHHHHHHHcCCCC-cceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEeCCchhHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGN-RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG--AEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~-~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~G--i~~gd~V~i~~~n~~~~~~~~ 118 (594)
..+..+.+. +...+++ +.+++. +.. | +.+||.|+++++.++|.+|.++| +++||+|++++||++++.+++
T Consensus 17 ~~~~~l~~~-~~~~~~~~~~~i~~---~~~-g--~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~ 89 (537)
T KOG1176|consen 17 TPITFLGRP-AFVYLDRNTSLVYQ---DSD-G--RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELA 89 (537)
T ss_pred ccccccccc-ccccccCcceEEEe---cCC-C--cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHH
Confidence 334444443 3334444 777765 311 2 68999999999999999999875 899999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+||+.+|++..+++|.+.+.++.+.++.++++++|++......+.++..... ..++++....... .........
T Consensus 90 la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~~---~~~~~~~~~ 163 (537)
T KOG1176|consen 90 LAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKIIVLTGDEGVI---SISDLVEDL 163 (537)
T ss_pred HHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---CceEEEecccCcc---ccccccccc
Confidence 9999999999999999999999999999999999999998887755443221 3344443320000 000001111
Q ss_pred e-HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhH
Q 007672 199 S-WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (594)
Q Consensus 199 ~-~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 277 (594)
+ +..+........ ..+...+|++.+.|||||||.||||++||++++.+........ .+...++.++.+|++|
T Consensus 164 ~~~~~~~~~~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~H 236 (537)
T KOG1176|consen 164 DAFEDLMPEGLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLFH 236 (537)
T ss_pred cchhhccccCCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHHH
Confidence 1 333333221111 4556779999999999999999999999999999877654443 5677899999999999
Q ss_pred HHHHHHHHH-hhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007672 278 ILDRVIEEY-FFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (594)
Q Consensus 278 ~~~~~~~l~-~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (594)
.+|+...+. ++..|+++++... ++..+++.|++|++|+++++|.++..|++.
T Consensus 237 ~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~-------------------------- 290 (537)
T KOG1176|consen 237 IYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKS-------------------------- 290 (537)
T ss_pred HhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcC--------------------------
Confidence 999998766 5666777777766 999999999999999999999999999763
Q ss_pred HhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC-CceEeeecccCCCCceeccCCCCccc
Q 007672 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCM 434 (594)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~-~~i~~~yG~tE~~~~~~~~~~~~~~~ 434 (594)
+...+.+++ ++|.+.+||+++++++.+.+.+.++ ..+.++||+||+++..+.+.......
T Consensus 291 -----------p~~~~~~l~--------sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k 351 (537)
T KOG1176|consen 291 -----------PIVKKYDLS--------SLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERK 351 (537)
T ss_pred -----------CccCcccCC--------ccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCc
Confidence 234444555 9999999999999999999999998 88999999999998777765544355
Q ss_pred cCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC-CccccCceEEEcCCCcEEEEe
Q 007672 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIID 513 (594)
Q Consensus 435 ~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~-g~~~TGDlg~~~~dG~l~~~G 513 (594)
++++|.++++.+.++.+ +.+. ..|+++.||||++|++++.||++||++|++.|.+ |||+|||+|++|+||+|++.+
T Consensus 352 ~~svG~~~~g~~~~v~~-e~g~--~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~Ivd 428 (537)
T KOG1176|consen 352 PGSVGRLLPGVRVKVLD-ETGV--SLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVD 428 (537)
T ss_pred ccccCccccceEEEeeC-CCCC--CCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEec
Confidence 69999999988888888 5554 4556689999999999999999999999999954 999999999999999999999
Q ss_pred ccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc--cccceeee--------E------ee
Q 007672 514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH--QKVGILEW--------S------CW 571 (594)
Q Consensus 514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~--~~~~~~~~--------~------~~ 571 (594)
|++|+||. +|++|+|.|||++|.+||.|.||+|||.+|+ +|+|+.+ ..++.+++ + ..
T Consensus 429 R~KdlIk~-~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k~l~~y~~~~~V 507 (537)
T KOG1176|consen 429 RSKDLIKY-GGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRKKLPAYKLPGGV 507 (537)
T ss_pred chhhheee-CCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHHhhCChhhccCeE
Confidence 99999996 8999999999999999999999999999996 5666554 33333333 2 25
Q ss_pred eecCceeeecccccccccccc
Q 007672 572 FIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 572 ~~p~~i~~~~~gk~~r~~~~~ 592 (594)
...+.||+|++||++|+.+|+
T Consensus 508 ~Fvd~lPKs~~GKi~R~~lr~ 528 (537)
T KOG1176|consen 508 VFVDELPKTPNGKILRRKLRD 528 (537)
T ss_pred EEeccCCCCCcchHHHHHHHH
Confidence 555679999999999999986
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-70 Score=608.05 Aligned_cols=522 Identities=34% Similarity=0.587 Sum_probs=421.0
Q ss_pred cccccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecc--------cCC------CCCCcEEEeHHHHHHHHHHH
Q 007672 24 VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPF--------VDG------KFGPYVWKTYKEVYEEVLQI 89 (594)
Q Consensus 24 ~~r~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~--------~d~------~~~~~~~~Ty~el~~~~~~l 89 (594)
+|||.....-.....+...|+.++|.++++++||++|+.+... .++ ..|+|+.+||+||.++++++
T Consensus 40 ~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~l 119 (696)
T PLN02387 40 AIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNF 119 (696)
T ss_pred ceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHH
Confidence 4999986532333346778999999999999999999954210 011 23678889999999999999
Q ss_pred HHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccc
Q 007672 90 VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 169 (594)
Q Consensus 90 a~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~ 169 (594)
|++|.++|+++||+|+|+++|+++|+++++||+++|++++|+++.++++++.++|++++++++|++.+....+.... ..
T Consensus 120 A~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~-~~ 198 (696)
T PLN02387 120 ASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDIS-SQ 198 (696)
T ss_pred HHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHh-hc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987766554332 33
Q ss_pred cccccEEEEecCCcHHHHHH-HhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHH
Q 007672 170 AQRLRVMVCFTSLTAEQKEM-AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF 248 (594)
Q Consensus 170 ~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~ 248 (594)
.+.++.++.+++........ .........+|+++...+...........++|+++++|||||||.||||++||+++++.
T Consensus 199 ~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~ 278 (696)
T PLN02387 199 LETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVAT 278 (696)
T ss_pred cCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHH
Confidence 45677888887643211110 01122345678887765433222333456899999999999999999999999999998
Q ss_pred HhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecC----C-----hHHHHHHHhhhcCeEEEec
Q 007672 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----D-----LNALRDDLMELKPTLLAGV 319 (594)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~----~-----~~~~~~~i~~~~~t~l~~~ 319 (594)
+......+ ..+..+|++++++|++|++++.....++..|+++.+... + +..++..+++++||+++++
T Consensus 279 ~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~v 354 (696)
T PLN02387 279 VAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAV 354 (696)
T ss_pred HHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEeh
Confidence 87754432 146788999999999999998876666777777765322 1 2345678999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc--CCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCH
Q 007672 320 PRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY--KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397 (594)
Q Consensus 320 P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~ 397 (594)
|.+++.|.+...........+.+.+++++...++..+.... .....+.+++.+.+++++..+|+++|.+++||+++++
T Consensus 355 P~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~ 434 (696)
T PLN02387 355 PAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSG 434 (696)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCH
Confidence 99999999887766666677888888888777666543211 1134567889999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCC-CCCCCceEEEccCCcc
Q 007672 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLF 476 (594)
Q Consensus 398 ~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~-~~~~~Gei~v~g~~v~ 476 (594)
++.+.+...+|+.++++||+||+++.++....... ..+++|.|+|+++++|+|.++++.... .++..|||+|+||+++
T Consensus 435 ~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~-~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~ 513 (696)
T PLN02387 435 DTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT-SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVT 513 (696)
T ss_pred HHHHHHHHHcCCCeeEeechhhcccceeecCcccC-CCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCccc
Confidence 99988887789999999999999887666554433 348999999999999999555543322 1234799999999999
Q ss_pred cccCCCchhhhhcc-c--CC--ccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecC
Q 007672 477 SGYYKNPDLTRESI-I--DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSC 551 (594)
Q Consensus 477 ~gY~~~~~~~~~~~-~--~g--~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~ 551 (594)
.|||++|+.|++.| . +| ||+|||+|++|+||+|++.||.||+||+++|++|+|.+||++|.+||.|.+|+|+|.+
T Consensus 514 ~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~ 593 (696)
T PLN02387 514 LGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADP 593 (696)
T ss_pred chhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecC
Confidence 99999999999998 2 35 9999999999999999999999999998679999999999999999999999999987
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-72 Score=540.79 Aligned_cols=494 Identities=22% Similarity=0.305 Sum_probs=416.9
Q ss_pred cCCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 007672 30 ASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 109 (594)
Q Consensus 30 ~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~ 109 (594)
.-+|....|-...|+.+.++-.+++.||+.|.++. ... .++||+||.+.++++|++|.++|+++||+|+|..|
T Consensus 38 ~~~g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~---~eg----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgp 110 (596)
T KOG1177|consen 38 YVHGCSQIPLDSETIGQLLETTTERVPDKEAAVFD---HEG----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGP 110 (596)
T ss_pred ccCCCCCCCcccccHHHHHHHHhhccCcceEEEEe---ecc----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecC
Confidence 44566667888999999999999999999999986 332 57999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHH-----Hhc---cc---------cccccc
Q 007672 110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE-----LLS---PD---------CRSAQR 172 (594)
Q Consensus 110 n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~-----~~~---~~---------~~~~~~ 172 (594)
|+.+|+.+++||.++|.+.+++||.+..++++..|++.+++++|+....... +++ .+ .+.++.
T Consensus 111 N~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~ 190 (596)
T KOG1177|consen 111 NSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPE 190 (596)
T ss_pred ChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCcccccccccc
Confidence 9999999999999999999999999999999999999999999998743221 111 11 235567
Q ss_pred ccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhccccccc-----ccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHH
Q 007672 173 LRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM-----EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247 (594)
Q Consensus 173 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~ 247 (594)
+.+++..+++.. ..+...+++++........ ......+||++.|.|||||||.||++.+||.++++
T Consensus 191 lthvi~~~ed~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~N 261 (596)
T KOG1177|consen 191 LTHVILADEDHP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLN 261 (596)
T ss_pred ceEEEecCCCCc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhh
Confidence 888887773322 2356677888876654321 11234689999999999999999999999999999
Q ss_pred HHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHH
Q 007672 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFE 324 (594)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~ 324 (594)
+.......+ +++..+++.+..|++|.+|... ++.++..|++++++.. ++.+.+++|.++++|.++++|+++.
T Consensus 262 na~~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~ 336 (596)
T KOG1177|consen 262 NARAVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFV 336 (596)
T ss_pred hHHHHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHH
Confidence 999988887 8888899999999999999775 7789999999999765 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHH
Q 007672 325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR 404 (594)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~ 404 (594)
.|++..+ ...++++ ++|.++.||+++++++++.+.
T Consensus 337 Dlln~~~-------------------------------------~~~~~~s--------~lr~~vigGa~~s~eLlk~iv 371 (596)
T KOG1177|consen 337 DLLNIPQ-------------------------------------KQQVDLS--------SLRKGVIGGAPVSPELLKLIV 371 (596)
T ss_pred HHhcchh-------------------------------------hccCchh--------hhhhheeCCCCCCHHHHHHHH
Confidence 9986333 3334455 899999999999999999998
Q ss_pred HhcCCc-eEeeecccCCCCceeccCCCCc--cccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCC
Q 007672 405 VTCCAF-LVQGYGLTETCGPTTVCFPDEM--CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481 (594)
Q Consensus 405 ~~~~~~-i~~~yG~tE~~~~~~~~~~~~~--~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~ 481 (594)
+..++. +...||+||++.+.+....++. ....++|+.+++.+..|+| .++...+++ ..|||++||++.+.|||+
T Consensus 372 ~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~~Gel~iRGY~tMl~Ywg 448 (596)
T KOG1177|consen 372 NQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--TKGELLIRGYSTMLGYWG 448 (596)
T ss_pred HhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--CCceEEEEechhheeecC
Confidence 877765 7789999999998888766653 3447999999999999999 778777776 789999999999999999
Q ss_pred Cchhhhhcc-cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------h
Q 007672 482 NPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------C 554 (594)
Q Consensus 482 ~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~ 554 (594)
+++.+.+.. .|.||+|||+|.+|++|+++++||.+|+|+ ++|++|+|.|||+.|.+||.|.||.|+|++|+ |
T Consensus 449 ~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VC 527 (596)
T KOG1177|consen 449 EEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVC 527 (596)
T ss_pred CcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEE
Confidence 999999988 899999999999999999999999999998 79999999999999999999999999999996 5
Q ss_pred hhccccccc----ceeee--------Eeeeec------CceeeeccccccccccccC
Q 007672 555 AMRRRHQKV----GILEW--------SCWFIP------GTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 555 ~~~~~~~~~----~~~~~--------~~~~~p------~~i~~~~~gk~~r~~~~~~ 593 (594)
|.|+..... +.+++ ..|++| +.+|+|.+||+++.++||-
T Consensus 528 A~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFeir~~ 584 (596)
T KOG1177|consen 528 ACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFEIREM 584 (596)
T ss_pred EEEEeeccccccccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhHHHHHH
Confidence 554432222 22222 224444 4489999999999999874
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-69 Score=530.46 Aligned_cols=529 Identities=35% Similarity=0.649 Sum_probs=467.0
Q ss_pred CCCCCCCCccccccccCCCCCCCC-CCcCcHHHHHHHHHHcCCCCcceEeecc--------cCCC------CCCcEEEeH
Q 007672 15 KDGKPSVGPVYRNLLASNGFPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPF--------VDGK------FGPYVWKTY 79 (594)
Q Consensus 15 ~~~~~~~~~~~r~~~~~~~~~~~~-~~~~tl~~~l~~~a~~~pd~~a~~~~~~--------~d~~------~~~~~~~Ty 79 (594)
..+.+.++.+|||.....++-..+ +...|+++++++.++++.++.++-..+. .|++ -|++..+||
T Consensus 13 ~~~n~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy 92 (678)
T KOG1180|consen 13 PAANEHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSY 92 (678)
T ss_pred CCCCCCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecH
Confidence 344668899999998877676655 8889999999999999999999865532 1332 467889999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCE-EEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchh
Q 007672 80 KEVYEEVLQIVSALRASGAEPGCR-VGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK 158 (594)
Q Consensus 80 ~el~~~~~~la~~L~~~Gi~~gd~-V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~ 158 (594)
.|+..++.++|++|.+.|++++++ ++|+++.+.+|.++++||++.+..+|-++..+..+.+.|-|++++++.+|++.+.
T Consensus 93 ~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~L 172 (678)
T KOG1180|consen 93 NEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSEL 172 (678)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHH
Confidence 999999999999999999997776 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccEEEEecCCc----HHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCC
Q 007672 159 VKELLSPDCRSAQRLRVMVCFTSLT----AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD 234 (594)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 234 (594)
...+.. .......++.++.++..+ .+........+...++|+++++.+.....+..++.++|+|+|+|||||||.
T Consensus 173 L~kl~~-~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~ 251 (678)
T KOG1180|consen 173 LPKLKA-PLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGL 251 (678)
T ss_pred HHHHHH-HHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCC
Confidence 886543 334568899999998432 222222234568899999999998877666777789999999999999999
Q ss_pred CceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecC-C----hHHHH----
Q 007672 235 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-D----LNALR---- 305 (594)
Q Consensus 235 pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~-~----~~~~~---- 305 (594)
||||+++|+|+++.+..+....+ .+++.|+++.++||.|++.+.+-+.+++.|+.+-..+. + ...+.
T Consensus 252 PKGVml~H~NiVA~~~G~~~~v~----~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~k 327 (678)
T KOG1180|consen 252 PKGVMLTHSNIVAGVTGVGENVP----ELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCK 327 (678)
T ss_pred CceEEEecccHHhhhhhhcccCc----ccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCc
Confidence 99999999999999988776542 68899999999999999999999999999999987643 1 11111
Q ss_pred HHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCce
Q 007672 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385 (594)
Q Consensus 306 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~sl 385 (594)
-.+..+|||++.++|.+++++-+...+.....+.+.+++|..++..++.++.. .....++++.+.|++++..+|.+|
T Consensus 328 GD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~---~g~~s~~ld~lVFkKIr~~lGG~l 404 (678)
T KOG1180|consen 328 GDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIER---NGPGSPLLDALVFKKIRALLGGNL 404 (678)
T ss_pred CccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhc---cCCchhhHHHHHHHHHHHHhCCce
Confidence 24558999999999999999999999999999999999999999999988873 345688999999999999999999
Q ss_pred eEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCC
Q 007672 386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC 465 (594)
Q Consensus 386 r~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~ 465 (594)
|++++||++++++..+.+.--+.+++.++||.||+++..+...+.+... +.+|.|++.++++++|.+++++........
T Consensus 405 R~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvdw~EgGY~~~~~PPr 483 (678)
T KOG1180|consen 405 RYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVDWEEGGYFAKNKPPR 483 (678)
T ss_pred EEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEEhhhcCccCCCCCCC
Confidence 9999999999999999999888999999999999999999988887776 899999999999999999998877654468
Q ss_pred ceEEEccCCcccccCCCchhhhhcc--cCC--ccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCC
Q 007672 466 GEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541 (594)
Q Consensus 466 Gei~v~g~~v~~gY~~~~~~~~~~~--~~g--~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~ 541 (594)
||||++|++++.||++|++.|++.| .|| ||+|||+|++.+||+|.+.+|.+|.+|+.+|+.|+++-+|+++++.|.
T Consensus 484 GEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~ 563 (678)
T KOG1180|consen 484 GEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPY 563 (678)
T ss_pred ceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcc
Confidence 9999999999999999999999999 489 999999999999999999999999999999999999999999999999
Q ss_pred ccceEEeecCC
Q 007672 542 IEDPQVNVSCS 552 (594)
Q Consensus 542 V~~~~V~g~~~ 552 (594)
|...+|++...
T Consensus 564 V~NICvyAd~~ 574 (678)
T KOG1180|consen 564 VDNICVYADSN 574 (678)
T ss_pred hhheEEecccc
Confidence 99999997665
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-70 Score=586.99 Aligned_cols=482 Identities=27% Similarity=0.403 Sum_probs=392.2
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
....++.++|.++++.+|+++|+++. +.. + ++||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus 8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~-~---~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~ 80 (534)
T COG0318 8 TAELTLASLLERAARRNPDRPALIFL---GRG-G---RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF 80 (534)
T ss_pred cccccHHHHHHHHHHhCCCceEEEEc---CCC-c---eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 45689999999999999999999986 432 1 5999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcce-
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP- 197 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 197 (594)
+||+++|++++|++|.+..+++.++++.++++.++++......... .....+....+........ ..
T Consensus 81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~~ 148 (534)
T COG0318 81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEA-VAEALPVVLVVLLVGDADD-----------RLP 148 (534)
T ss_pred HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHH-HhccCCcceEEEecccccc-----------ccc
Confidence 9999999999999999999999999999999999999873332222 1111122222222222111 00
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCC--CCCCcEEEEecCh
Q 007672 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK--MTVDDVYLSFLPL 275 (594)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~pl 275 (594)
.++++................++++++++|||||||.||+|++||++++.+...+...+ . ++..|++++++|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl 223 (534)
T COG0318 149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPL 223 (534)
T ss_pred ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecCh
Confidence 24455533221222222226789999999999999999999999999999988887776 5 8899999999999
Q ss_pred hHHHHHHHHHH-hhhcCcEEEEec---CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007672 276 AHILDRVIEEY-FFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (594)
Q Consensus 276 ~~~~~~~~~l~-~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (594)
+|.+|+...+. .++.|+++++.+ .++..++..+.++++|++.++|+++..++.........
T Consensus 224 ~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~--------------- 288 (534)
T COG0318 224 FHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDD--------------- 288 (534)
T ss_pred HHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccc---------------
Confidence 99999997555 599999999987 38999999999999999999999999987643322111
Q ss_pred HHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC-CceEeeecccCCCCceeccCCC
Q 007672 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPD 430 (594)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~-~~i~~~yG~tE~~~~~~~~~~~ 430 (594)
++ +++|.+++||+++++++.+.+.+.++ ..++..||+||+++.++.....
T Consensus 289 ----------------------~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 339 (534)
T COG0318 289 ----------------------LS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD 339 (534)
T ss_pred ----------------------cc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCc
Confidence 11 03999999999999999999999887 5799999999999887777766
Q ss_pred C-ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC-CccccCceEEEcCCCc
Q 007672 431 E-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGV 508 (594)
Q Consensus 431 ~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~-g~~~TGDlg~~~~dG~ 508 (594)
. ....+++|.|+|+++++|+| ++++ .+.+ |+.|||+++||+++.|||++|+.+.+.|.+ |||+|||+|++|+||+
T Consensus 340 ~~~~~~~~~G~~~pg~~v~Ivd-~~~~-~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~ 416 (534)
T COG0318 340 DLLAKPGSVGRPLPGVEVRIVD-PDGG-EVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGY 416 (534)
T ss_pred hhhhcCCcccccCCCcEEEEEe-CCCC-ccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCcc
Confidence 6 23447889999999999999 5554 2332 679999999999999999999999998865 9999999999999999
Q ss_pred EEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc----cceeee----------
Q 007672 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK----VGILEW---------- 568 (594)
Q Consensus 509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~----~~~~~~---------- 568 (594)
+++.||.+|+|+. +|++|+|.|||+++.+||.|.||+|+|++|+ +++++.+.. .+..++
T Consensus 417 l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~~l~~ 495 (534)
T COG0318 417 LYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLAL 495 (534)
T ss_pred EEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCCHHHHHHHHHhhhhc
Confidence 9999999999995 9999999999999999999999999999986 444444322 122222
Q ss_pred ----EeeeecCceeeecccccccccccc
Q 007672 569 ----SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 569 ----~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
..+..++.+|+|++||++|+.+||
T Consensus 496 ~~~P~~v~~v~~lP~t~sGKi~r~~lr~ 523 (534)
T COG0318 496 YKVPRIVVFVDELPRTASGKIDRRALRE 523 (534)
T ss_pred ccCCeEEEEeCCCCCCCchhhhHHHHHH
Confidence 225555889999999999999886
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-68 Score=592.44 Aligned_cols=513 Identities=31% Similarity=0.532 Sum_probs=408.5
Q ss_pred CCCCccccccccCC----CCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecc----------cCCC--------CCCcEE
Q 007672 19 PSVGPVYRNLLASN----GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPF----------VDGK--------FGPYVW 76 (594)
Q Consensus 19 ~~~~~~~r~~~~~~----~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~----------~d~~--------~~~~~~ 76 (594)
++.++++|+..... .+........|+.++|.++++++||++|+.+... .++. .+++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (700)
T PTZ00216 42 ENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRY 121 (700)
T ss_pred CCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceE
Confidence 36788999765332 2322234567999999999999999999987510 0111 135689
Q ss_pred EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcc
Q 007672 77 KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (594)
Q Consensus 77 ~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~ 156 (594)
+||+||.++++++|++|+++|+++||+|+|+++|+++++++++||+++|++++|+++..+++++.+++++++++++|++.
T Consensus 122 lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~ 201 (700)
T PTZ00216 122 ITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNG 201 (700)
T ss_pred eEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhccc--cccc-ccCCCCCCCeEEEEecCCCCC
Q 007672 157 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK--VNEM-EILPPQPFNICTIMYTSGTSG 233 (594)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~a~i~~TSGTTG 233 (594)
.....+.............++.++..... .........+|+++...+. .... ...+..++++++++|||||||
T Consensus 202 ~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG 277 (700)
T PTZ00216 202 KNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTG 277 (700)
T ss_pred HHHHHHHHhhhhccCCceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCC
Confidence 76655433322111112245555443211 0112345678888876542 1111 123346899999999999999
Q ss_pred CCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecCChHHHHH-------
Q 007672 234 DPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD------- 306 (594)
Q Consensus 234 ~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~~~~~~~~------- 306 (594)
.||||++||+++++.+..+...+......+..++++++++|++|.+++......+..|+++.+. ++..+.+
T Consensus 278 ~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~~~~ 355 (700)
T PTZ00216 278 DPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFARPHG 355 (700)
T ss_pred cCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhccccc
Confidence 9999999999999988766543311111246789999999999999987666667888877663 5555555
Q ss_pred HHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCcee
Q 007672 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386 (594)
Q Consensus 307 ~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr 386 (594)
.+++++||++.++|.+++.+.+...........+++.++..+...+...+..+. ..+.++.+.+++++..+|+++|
T Consensus 356 ~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~g~~lr 431 (700)
T PTZ00216 356 DLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYWNEKVFSAPRAVLGGRVR 431 (700)
T ss_pred hHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHhCCcEE
Confidence 688999999999999999999888777777777888899988888777665442 3456788889999999999999
Q ss_pred EEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCc
Q 007672 387 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCG 466 (594)
Q Consensus 387 ~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~G 466 (594)
.+++||+++++++.++++..++ .++++||+||+++.++....... ..+++|+|+++++++|+| +++......++..|
T Consensus 432 ~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~-~~~svG~p~~g~evkI~d-~~~~~~~~~~~~~G 508 (700)
T PTZ00216 432 AMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLD-TEEYKHTDTPEPRG 508 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCC-CCCCcCCcCCCeEEEEee-chhhccCCCCCCCc
Confidence 9999999999999988887778 99999999999877665544433 348999999999999999 44322222334579
Q ss_pred eEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccc
Q 007672 467 EVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (594)
Q Consensus 467 ei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~ 544 (594)
||+|+|++++.||+++|+.+++.| .||||+|||+|++|+||+|++.||.||+||..+|++|+|.+||++|.+||.|.+
T Consensus 509 EL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~ 587 (700)
T PTZ00216 509 EILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVP 587 (700)
T ss_pred eEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCccc
Confidence 999999999999999999999999 799999999999999999999999999998558999999999999999999997
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-69 Score=560.67 Aligned_cols=475 Identities=21% Similarity=0.229 Sum_probs=386.2
Q ss_pred CcHHHHHHHHHHc-CCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHH
Q 007672 42 NTAWDIFSMSVQK-YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 42 ~tl~~~l~~~a~~-~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
|--++.++++.+. .+|+.|+++. ++.++. +.+||+||.+.+.++|+.|++ .|+ +||+|+|++|+.++.+++++
T Consensus 9 N~~~n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~L 83 (528)
T COG0365 9 NLALNALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALL 83 (528)
T ss_pred echhhhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHH
Confidence 3345567777774 5789999998 555455 899999999999999999997 578 99999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccc-cccc-cccEEEEecCCcHHHHHHHhhCCcce
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-RSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKP 197 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~ 197 (594)
||+++|++.+|+.+..+++.+...+++++++++|+.+........... .... .+..+++.....
T Consensus 84 A~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~-------------- 149 (528)
T COG0365 84 ATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG-------------- 149 (528)
T ss_pred HHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc--------------
Confidence 999999999999999999999999999999999998876553321110 0000 000033333221
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhH
Q 007672 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (594)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 277 (594)
..|+++..... ......+...+|+++++|||||||+||+|+++|..++.......... ..+.++|++++..++.|
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~----~~~~~~Dv~w~~ad~GW 224 (528)
T COG0365 150 LWYDEAVEKAS-EKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFH----GDLLPGDRFWNSSDPGW 224 (528)
T ss_pred ccHHHHhhccC-CCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHh----hCCCCCCEEEeCCCchh
Confidence 56777776543 23334448899999999999999999999999998777766554322 26679999999999999
Q ss_pred HHHHHH-HHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007672 278 ILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (594)
Q Consensus 278 ~~~~~~-~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (594)
..|++. ++.+|..|++++++.. +++.+++.|+++++|.++.+|+.++.|.+...
T Consensus 225 ~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--------------------- 283 (528)
T COG0365 225 IYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL--------------------- 283 (528)
T ss_pred hhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC---------------------
Confidence 999987 7889999999999866 38999999999999999999999999875311
Q ss_pred HHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCc
Q 007672 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~ 432 (594)
.++.+++ +||.+.+.||+++++..+++.+.+|++|.+.||+||++++.....+ ..
T Consensus 284 ----------------~~~~dls--------sLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~ 338 (528)
T COG0365 284 ----------------GEPYDLS--------SLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PV 338 (528)
T ss_pred ----------------cccccch--------hheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-Cc
Confidence 4455666 9999999999999999999999999999999999999966555555 33
Q ss_pred cccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccC--CcccccCCCchhhhhcccCCccccCceEEEcCCCcEE
Q 007672 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510 (594)
Q Consensus 433 ~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~--~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~ 510 (594)
.. ++.|.|+||+++.++| ++++.++ .++ |+|.++.+ +++++||+|++...+.+.++||.|||.+++|+||++|
T Consensus 339 ~~-g~~g~p~pG~~~~vvd-d~g~~~~--~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy~~ 413 (528)
T COG0365 339 KN-GSSGLPLPGYAVRRVD-DEGNPVP--PGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFW 413 (528)
T ss_pred CC-CCCCCCCCCceeEEEC-CCCCcCC--CCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCCEE
Confidence 33 5669999999999999 6655444 446 99999986 9999999999999998865699999999999999999
Q ss_pred EEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccccc-----------------cee-
Q 007672 511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKV-----------------GIL- 566 (594)
Q Consensus 511 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~-----------------~~~- 566 (594)
|.||.||+||+ .|++|.|.|||++|.+||.|.||+|+|++|+ .++|+.++.. +.-
T Consensus 414 i~GR~DDvI~v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~~L~~ei~~~vr~~~~~~~ 492 (528)
T COG0365 414 LHGRSDDVIKV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNIGPHA 492 (528)
T ss_pred EEeeccceEec-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChHHHHHHHHHHHHhccCccc
Confidence 99999999996 7999999999999999999999999999996 4455544322 110
Q ss_pred eeEeeeecCceeeecccccccccccc
Q 007672 567 EWSCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 567 ~~~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
...++.....||+|.|||++|+.+|+
T Consensus 493 ~p~~i~fv~~LPkT~sGKI~R~~lr~ 518 (528)
T COG0365 493 IPRKIRFVDELPKTASGKIQRRLLRK 518 (528)
T ss_pred CCceEEEecCCCCCCcccHHHHHHHH
Confidence 01235566689999999999999885
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=565.69 Aligned_cols=502 Identities=17% Similarity=0.204 Sum_probs=379.8
Q ss_pred CCcCcHHHHHHHHHHc--CCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 007672 39 SDLNTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~--~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~ 116 (594)
...|+..++|+++++. +|+++|+++. ....+..+++||.||.+++.++|+.|+++|+++||+|+++++|++++++
T Consensus 56 ~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~ 132 (647)
T PTZ00237 56 GELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLI 132 (647)
T ss_pred CeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence 4557789999998865 7999999886 3333345789999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchh---------HHHHhcccccccccccEEEEecCCcH---
Q 007672 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK---------VKELLSPDCRSAQRLRVMVCFTSLTA--- 184 (594)
Q Consensus 117 ~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~--- 184 (594)
++|||+++|++++|+++.++++++.+++++++++++|+++.. ...+..+..........++.+.....
T Consensus 133 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 212 (647)
T PTZ00237 133 AMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSE 212 (647)
T ss_pred HHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccc
Confidence 999999999999999999999999999999999999997521 11111111101011234444321100
Q ss_pred HHHHH--HhhCCcceeeHHHHHhccc----ccccccCCCCCCCeEEEEecCCCCCCCceEeeccHh-HHHHHhhhhhhhc
Q 007672 185 EQKEM--AVQTGIKPYSWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLD 257 (594)
Q Consensus 185 ~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~-l~~~~~~~~~~~~ 257 (594)
..... ..........|++++.... ..........++++++++|||||||.||||+++|.+ +..........+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~- 291 (647)
T PTZ00237 213 SDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII- 291 (647)
T ss_pred cccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc-
Confidence 00000 0000012345776664321 111222345789999999999999999999999998 444333222222
Q ss_pred cccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecCC-------hHHHHHHHhhhcCeEEEechHHHHHHHHHH
Q 007672 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD-------LNALRDDLMELKPTLLAGVPRVFEKIHEGI 330 (594)
Q Consensus 258 ~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~~-------~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 330 (594)
....++++++..|+.|..++..++.++..|+++++.+.+ +..+++.|+++++|+++++|++++.|.+..
T Consensus 292 ----~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 367 (647)
T PTZ00237 292 ----EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTD 367 (647)
T ss_pred ----CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhC
Confidence 566789999999999987666677889999999987652 678999999999999999999999987531
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCc
Q 007672 331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 410 (594)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~ 410 (594)
... .......+++ +||.+++||+++++++.+++.+.+|+.
T Consensus 368 ~~~--------------------------------~~~~~~~~l~--------~Lr~i~~~G~~l~~~~~~~~~~~~g~~ 407 (647)
T PTZ00237 368 PEA--------------------------------TIIRSKYDLS--------NLKEIWCGGEVIEESIPEYIENKLKIK 407 (647)
T ss_pred ccc--------------------------------cccccccCcc--------hheEEEecCccCCHHHHHHHHHhcCCC
Confidence 100 0001112233 899999999999999999999989999
Q ss_pred eEeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccC---CcccccCCCchhhh
Q 007672 411 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTR 487 (594)
Q Consensus 411 i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~ 487 (594)
+++.||+||+++......+......+++|.|+++++++|+| +++..+ +.|+.|||++++| +++.|||++++.+.
T Consensus 408 i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~--~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~ 484 (647)
T PTZ00237 408 SSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKEL--NVNEIGEVAFKLPMPPSFATTFYKNDEKFK 484 (647)
T ss_pred EEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCC--CCCCceEEEEeccCCchhhCceeCCHHHHH
Confidence 99999999998765443332222237899999999999999 666544 4558999999986 78999999999998
Q ss_pred hccc--CCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccc
Q 007672 488 ESII--DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRR 559 (594)
Q Consensus 488 ~~~~--~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~ 559 (594)
+.|. +|||+|||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||.|.||+|+|++++ ++++..
T Consensus 485 ~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~ 563 (647)
T PTZ00237 485 QLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVL 563 (647)
T ss_pred HHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEe
Confidence 8773 799999999999999999999999999996 7999999999999999999999999999874 334432
Q ss_pred cc-----ccce------------eeeEe------eeecCceeeecccccccccccc
Q 007672 560 HQ-----KVGI------------LEWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 560 ~~-----~~~~------------~~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.. .++. ..+.. +.....||+|++||++|+.+|+
T Consensus 564 ~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~ 619 (647)
T PTZ00237 564 KQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISK 619 (647)
T ss_pred ccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHH
Confidence 21 1111 11223 4444579999999999998875
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-65 Score=561.30 Aligned_cols=496 Identities=16% Similarity=0.174 Sum_probs=380.6
Q ss_pred cCcHHHHHHHHHH-cCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 41 LNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 41 ~~tl~~~l~~~a~-~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
.|...++|+++++ .+|+++|+++. ....+..+.+||.||.+++.++|+.|++.|+++||+|+|+++|++++++++|
T Consensus 87 ~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~l 163 (666)
T PLN02654 87 TNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAML 163 (666)
T ss_pred eeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4566889988876 48999999885 4344555899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHH---------Hhcccccc---cccccEEEEecCCcHHHH
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE---------LLSPDCRS---AQRLRVMVCFTSLTAEQK 187 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~---------~~~~~~~~---~~~~~~v~~~~~~~~~~~ 187 (594)
||+++|++++|+++.++.+++..++++++++++|+++..... +..++... ......++..+.......
T Consensus 164 A~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
T PLN02654 164 ACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKR 243 (666)
T ss_pred HHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccc
Confidence 999999999999999999999999999999999998764321 10100000 011122222222110000
Q ss_pred HHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHH-HhhhhhhhccccCCCCCC
Q 007672 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVD 266 (594)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~-~~~~~~~~~~~~~~~~~~ 266 (594)
............|+++.... ..........++++++++|||||||.||||+++|.+++.. ...+...+ ++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-----~~~~~ 317 (666)
T PLN02654 244 EDTKWQEGRDVWWQDVVPNY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-----DYKPT 317 (666)
T ss_pred cccccccCCcccHHHHhhcC-CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-----CCCCC
Confidence 00000001123355554322 1112223357899999999999999999999999998644 33344444 78899
Q ss_pred cEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchH
Q 007672 267 DVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340 (594)
Q Consensus 267 ~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~ 340 (594)
|++++..|+.|.+++.. ++.+|..|++++++++ ++..+++.|+++++|+++++|++++.|.+....
T Consensus 318 d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------- 389 (666)
T PLN02654 318 DVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDE-------- 389 (666)
T ss_pred cEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcc--------
Confidence 99999999999998765 6678999999999863 689999999999999999999999998653110
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC---CceEeeecc
Q 007672 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGL 417 (594)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~yG~ 417 (594)
.....+++ +||.++++|+++++++.+++.+.+| +++.+.||+
T Consensus 390 ---------------------------~~~~~~l~--------~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~ 434 (666)
T PLN02654 390 ---------------------------YVTRHSRK--------SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 434 (666)
T ss_pred ---------------------------ccccCChh--------heeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccc
Confidence 01112333 8999999999999999999998887 789999999
Q ss_pred cCCCCceeccCCCC-ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---c
Q 007672 418 TETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---I 491 (594)
Q Consensus 418 tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~ 491 (594)
||+++......+.. ...++++|.|++|++++|+| +++..+ +.++.|||++++ |+++.|||++++.+.+.+ .
T Consensus 435 TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~--~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~ 511 (666)
T PLN02654 435 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEI--EGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPF 511 (666)
T ss_pred cccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCC--CCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcC
Confidence 99988766544432 33458999999999999999 666544 345789999999 789999999999888766 3
Q ss_pred CCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccce
Q 007672 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGI 565 (594)
Q Consensus 492 ~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~ 565 (594)
+|||+|||+|++|+||+++++||.||+||+ +|++|+|.|||++|.+||+|.||+|+|++++ +++++.+.....
T Consensus 512 ~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~ 590 (666)
T PLN02654 512 AGYYFSGDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPY 590 (666)
T ss_pred CCEEEeCceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCC
Confidence 899999999999999999999999999996 7999999999999999999999999999885 334332221111
Q ss_pred -------------eeeEeeeec------Cceeeecccccccccccc
Q 007672 566 -------------LEWSCWFIP------GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 566 -------------~~~~~~~~p------~~i~~~~~gk~~r~~~~~ 592 (594)
..+..|++| +.||+|.+||++|+.+|+
T Consensus 591 ~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~ 636 (666)
T PLN02654 591 SEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 636 (666)
T ss_pred CHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHH
Confidence 122334444 568999999999998874
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-64 Score=544.48 Aligned_cols=476 Identities=20% Similarity=0.175 Sum_probs=370.2
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..++.+.|.+.++++|+++|+.+. +. +++||+||.++++++|+.|.+ .+||+|+|+++|+++++++++|
T Consensus 18 ~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA 86 (539)
T PRK06334 18 GKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFA 86 (539)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHH
Confidence 378999999999999999998753 22 369999999999999999987 4899999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|+++..+.+++.+++++++++++|++.+....+.............++.+++.... ..+
T Consensus 87 ~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~ 154 (539)
T PRK06334 87 TLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LSF 154 (539)
T ss_pred HHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------ccH
Confidence 99999999999999999999999999999999998776554422111000001123333321100 000
Q ss_pred HHHHhc-----ccc----cccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEE
Q 007672 201 DEFLHL-----GKV----NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271 (594)
Q Consensus 201 ~~~~~~-----~~~----~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (594)
.+.... ... .........++++++++|||||||.||+|++||+++..........+ ++..+|++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~ 229 (539)
T PRK06334 155 WEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMMS 229 (539)
T ss_pred HHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEEE
Confidence 000000 000 00011234678999999999999999999999999998877665555 6788999999
Q ss_pred ecChhHHHHHHH-HHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 007672 272 FLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348 (594)
Q Consensus 272 ~~pl~~~~~~~~-~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (594)
.+|++|.+++.. .+.++..|+++++... ++..+++.|+++++|+++++|.+++.|++.......
T Consensus 230 ~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------- 296 (539)
T PRK06334 230 FLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQES------------- 296 (539)
T ss_pred ecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhccc-------------
Confidence 999999999865 6778999999988753 899999999999999999999999998764321111
Q ss_pred HHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceecc
Q 007672 349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVC 427 (594)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~ 427 (594)
++ ++||.+++||+++++++.+.+.+.+ ++.+++.||+||++.+++..
T Consensus 297 ------------------------~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 344 (539)
T PRK06334 297 ------------------------CL--------PSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITIN 344 (539)
T ss_pred ------------------------cc--------ccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEec
Confidence 11 2899999999999999999999888 78999999999999877665
Q ss_pred CCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc--cCCccccCceEEEcC
Q 007672 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDGWFHTGDIGQILP 505 (594)
Q Consensus 428 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~~g~~~TGDlg~~~~ 505 (594)
.........++|+|+++++++|+| +++ ..+++.|+.|||+|+|++++.||+++++.+.... .+|||+|||+|++|+
T Consensus 345 ~~~~~~~~~~vG~p~~g~~v~i~d-~~~-~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~ 422 (539)
T PRK06334 345 TVNSPKHESCVGMPIRGMDVLIVS-EET-KVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDR 422 (539)
T ss_pred cCCCCCCCCcCceecCCCEEEEEc-CCC-CccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECC
Confidence 443333346799999999999998 432 3455667999999999999999999988654332 367999999999999
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccc------eEEeecCCch----hhccccc---c----cceeee
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED------PQVNVSCSSC----AMRRRHQ---K----VGILEW 568 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~------~~V~g~~~~~----~~~~~~~---~----~~~~~~ 568 (594)
||+|++.||.+|+||+ +|++|+|.|||++|.+||+|.+ ++|+|+++.. +++.... + +....+
T Consensus 423 ~G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 501 (539)
T PRK06334 423 HGELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPTSISEVNDILKNSKT 501 (539)
T ss_pred CCeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccCChHHHHHHHHhcCC
Confidence 9999999999999996 8999999999999999999998 7888887752 2222110 0 000012
Q ss_pred Ee------eeecCceeeecccccccccccc
Q 007672 569 SC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 569 ~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.. +...+.||+|++||+.|+.+++
T Consensus 502 ~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 531 (539)
T PRK06334 502 SSILKISYHHQVESIPMLGTGKPDYCSLNA 531 (539)
T ss_pred cccccchheeeecccccccCCcccHHHHHH
Confidence 23 3445669999999999999876
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-64 Score=548.77 Aligned_cols=482 Identities=21% Similarity=0.188 Sum_probs=374.5
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
.-++.++|.+.++++|+++|++.. + +.+||.||.+++.++|++|.+.|+++||+|+|+++|+++++++++|
T Consensus 6 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la 76 (563)
T PLN02860 6 QAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLA 76 (563)
T ss_pred hhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 367999999999999999999754 3 4799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|+++.++.+++.++++++++++++++...............+.+..++..++...... ........+
T Consensus 77 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~ 152 (563)
T PLN02860 77 VACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVF----IFLNSFLTT 152 (563)
T ss_pred HhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccc----cchhhcccc
Confidence 9999999999999999999999999999999999875422211111112233333444332211000 000001111
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
+++...............++++++++|||||||.||+|+++|.+++.........+ ++..+|+++..+|++|.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~g 227 (563)
T PLN02860 153 EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIGG 227 (563)
T ss_pred chhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhcc
Confidence 22111100011111233578999999999999999999999999988766655544 6788999999999999999
Q ss_pred HHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 007672 281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359 (594)
Q Consensus 281 ~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (594)
+...+.++..|+++++.+. ++..+++.|+++++|++.++|.++..|.+.......
T Consensus 228 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~------------------------ 283 (563)
T PLN02860 228 LSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMT------------------------ 283 (563)
T ss_pred HHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhc------------------------
Confidence 8877888999999998776 999999999999999999999999998764321100
Q ss_pred cCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC-------
Q 007672 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE------- 431 (594)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~------- 431 (594)
..++ ++||.+++||+++++++.+.+.+.| ++.+++.||+||+++.+.......
T Consensus 284 -----------~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 344 (563)
T PLN02860 284 -----------WKVF--------PSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK 344 (563)
T ss_pred -----------cccc--------cceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccch
Confidence 0011 3899999999999999999999888 789999999999986544322111
Q ss_pred ---------------ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCcc
Q 007672 432 ---------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 495 (594)
Q Consensus 432 ---------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~ 495 (594)
.....++|.|+++++++|++ ++ +++.|||+++|+.++.||+++++.+.+.+ .+|||
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~ 416 (563)
T PLN02860 345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWL 416 (563)
T ss_pred hhhhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCeE
Confidence 11123689999999999998 43 34789999999999999999999999888 78999
Q ss_pred ccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc-------
Q 007672 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK------- 562 (594)
Q Consensus 496 ~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~------- 562 (594)
+|||+|++|+||++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|+++++. +++++....
T Consensus 417 ~TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~ 495 (563)
T PLN02860 417 DTGDIGWIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNE 495 (563)
T ss_pred EccceEEEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCcccccccc
Confidence 99999999999999999999999996 8999999999999999999999999998774 333332110
Q ss_pred ---------cce--------e-eeEeeeec-------Cceeeecccccccccccc
Q 007672 563 ---------VGI--------L-EWSCWFIP-------GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 563 ---------~~~--------~-~~~~~~~p-------~~i~~~~~gk~~r~~~~~ 592 (594)
+.. . .+..|++| ..+|+|++||+.|+++++
T Consensus 496 ~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~ 550 (563)
T PLN02860 496 KENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRR 550 (563)
T ss_pred chhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHHHHHH
Confidence 100 1 13334333 458999999999998875
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-64 Score=554.41 Aligned_cols=493 Identities=17% Similarity=0.207 Sum_probs=386.7
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
..|...++|+++++.+|+++|+++. +...++.+.+||.||.+++.++|+.|++.|+++||+|+++++|+++++++++
T Consensus 55 ~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 131 (625)
T TIGR02188 55 ELNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAML 131 (625)
T ss_pred EEEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4567888999999999999999986 4435667899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH---------HHHhcccccccc-cccEEEEecCCcHHHHHH
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQ-RLRVMVCFTSLTAEQKEM 189 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~ 189 (594)
||+++|++++|+++..+.+++.+++++++++++|+++... ..+...+ ...+ .++.++.++.......
T Consensus 132 A~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 208 (625)
T TIGR02188 132 ACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEAL-EKCPVSVEHVLVVRRTGNPVP-- 208 (625)
T ss_pred HHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHH-HhCCCCccEEEEEcCCCCCcC--
Confidence 9999999999999999999999999999999999987532 1111111 1122 3455555543211000
Q ss_pred HhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhh-hhhhccccCCCCCCcE
Q 007672 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMTVDDV 268 (594)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~-~~~~~~~~~~~~~~~~ 268 (594)
........|+++..... .........++++++++|||||||.||+|+++|.+++...... ...+ ++.++|+
T Consensus 209 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~ 280 (625)
T TIGR02188 209 --WVEGRDVWWHDLMAKAS-AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DIKDGDI 280 (625)
T ss_pred --ccccccccHHHHHhhcC-CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CCCCCcE
Confidence 00011234666554321 1222334578899999999999999999999999987654332 2222 6788999
Q ss_pred EEEecChhHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 007672 269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (594)
Q Consensus 269 ~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~ 342 (594)
+++..|+.|..++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+.....
T Consensus 281 ~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------- 351 (625)
T TIGR02188 281 FWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW--------- 351 (625)
T ss_pred EEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc---------
Confidence 999999999988764 6778999999998753 7899999999999999999999999986532110
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC---CceEeeecccC
Q 007672 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE 419 (594)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~yG~tE 419 (594)
.+..+++ +||.++++|+++++++.+++.+.++ +++++.||+||
T Consensus 352 --------------------------~~~~~l~--------~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE 397 (625)
T TIGR02188 352 --------------------------VKKHDLS--------SLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTE 397 (625)
T ss_pred --------------------------cccCCcc--------ceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccc
Confidence 1112233 8999999999999999999988875 78999999999
Q ss_pred CCCceeccCCC-CccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cCC
Q 007672 420 TCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG 493 (594)
Q Consensus 420 ~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~~g 493 (594)
+++.+....+. ....++++|+|++|++++|+| +++...+ +.|+.|||+++| |+++.|||++++.+.+.+ .+|
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~-~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g 475 (625)
T TIGR02188 398 TGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE-GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPG 475 (625)
T ss_pred cCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC-CCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCC
Confidence 99876554333 123458899999999999999 6665543 256899999999 689999999998877766 479
Q ss_pred ccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc---
Q 007672 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG--- 564 (594)
Q Consensus 494 ~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~--- 564 (594)
||+|||+|++|+||++++.||.||+|++ +|++|+|.+||++|.+||+|.||+|+|++++ +++++......
T Consensus 476 ~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~ 554 (625)
T TIGR02188 476 YYFTGDGARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDD 554 (625)
T ss_pred EEECCceEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCH
Confidence 9999999999999999999999999996 7999999999999999999999999998875 33443322111
Q ss_pred -----ee-----eeE------eeeecCceeeecccccccccccc
Q 007672 565 -----IL-----EWS------CWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 565 -----~~-----~~~------~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+. .+. .+...+.||+|++||+.|+.+++
T Consensus 555 ~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~ 598 (625)
T TIGR02188 555 ELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRK 598 (625)
T ss_pred HHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHH
Confidence 00 112 24555779999999999998875
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-64 Score=546.39 Aligned_cols=476 Identities=19% Similarity=0.181 Sum_probs=383.5
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
.++.++|.+.++++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~ 119 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA 119 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 48999999999999999999864 3 47999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (594)
+++|++++|+++.++.+++.+++++++++++|++.+....+... ......+..++...+... ........++
T Consensus 120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 191 (549)
T PRK07788 120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSAL-PPDLGRLRAWGGNPDDDE-------PSGSTDETLD 191 (549)
T ss_pred HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhh-ccccccceEEEEecCccc-------cCCcCcccHH
Confidence 99999999999999999999999999999999998765544322 112222333322221110 0112345677
Q ss_pred HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHH
Q 007672 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281 (594)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 281 (594)
++...... ...+...++.++++|||||||.||+|+++|+++++.+......+ ++..++++++..|++|.+++
T Consensus 192 ~~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~ 263 (549)
T PRK07788 192 DLIAGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATGW 263 (549)
T ss_pred HHhcCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHHH
Confidence 76654322 11223467889999999999999999999999999877766655 67888999999999999999
Q ss_pred HHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc
Q 007672 282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360 (594)
Q Consensus 282 ~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (594)
...+.++..|+++++... ++..+++.++++++|+++++|+++..+++......
T Consensus 264 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------- 317 (549)
T PRK07788 264 AHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVL-------------------------- 317 (549)
T ss_pred HHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccccc--------------------------
Confidence 877778999999988765 99999999999999999999999998875322100
Q ss_pred CCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCcccc
Q 007672 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 440 (594)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~ 440 (594)
...++ ++||.+++||+++++++.+.+.+.++..+++.||+||++..+...........+++|.
T Consensus 318 ---------~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~ 380 (549)
T PRK07788 318 ---------AKYDT--------SSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGR 380 (549)
T ss_pred ---------CCCCC--------CceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCccc
Confidence 00111 2899999999999999999999988999999999999987655443332234478999
Q ss_pred CccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCceeE
Q 007672 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520 (594)
Q Consensus 441 ~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~ 520 (594)
|+++++++|+| +++..++ .|+.|||+++|+.++.||++++.. ...+|||+|||+|++|+||++++.||.||+|+
T Consensus 381 ~~~~~~~~i~d-~~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~ 454 (549)
T PRK07788 381 PPKGVTVKILD-ENGNEVP--RGVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIV 454 (549)
T ss_pred CCCCcEEEEEC-CCcCCCC--CCCeEEEEEeCCCccccccCCCcc---cccCCceecCceEEEcCCCCEEEeccCcceEE
Confidence 99999999999 6665444 468999999999999999998765 34689999999999999999999999999999
Q ss_pred cCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--ccceee--------eEe------eeecCcee
Q 007672 521 ISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--KVGILE--------WSC------WFIPGTLF 578 (594)
Q Consensus 521 ~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~~~~~~--------~~~------~~~p~~i~ 578 (594)
+ +|++|+|.+||++|.++|+|.+|+|++++++ ++++..+. ..+..+ ++. +.....||
T Consensus 455 ~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP 533 (549)
T PRK07788 455 S-GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVVFLDELP 533 (549)
T ss_pred E-CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCCcEEEEeCCCC
Confidence 6 8999999999999999999999999998875 34443321 122111 222 44446799
Q ss_pred eecccccccccccc
Q 007672 579 TCSATKLYPLRAEE 592 (594)
Q Consensus 579 ~~~~gk~~r~~~~~ 592 (594)
+|++||+.|+.+++
T Consensus 534 ~t~~GKi~r~~L~~ 547 (549)
T PRK07788 534 RNPTGKVLKRELRE 547 (549)
T ss_pred CCCCcCEeHHHhhc
Confidence 99999999999986
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=549.53 Aligned_cols=496 Identities=21% Similarity=0.257 Sum_probs=386.1
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..+++++|.++++++|+++|+++... ++..+..+++||.||.+++.++|+.|+++|+++||+|+++++|++++++++||
T Consensus 24 ~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA 102 (632)
T PRK07529 24 PASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG 102 (632)
T ss_pred CCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 46899999999999999999987511 11123447899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH-----HHHhcccccccccccEEEEecCCcHHH--HHHH---
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQ--KEMA--- 190 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~--- 190 (594)
|+++| +++|+++.++++++.++++.++++++|++.... ..+.... ...+.++.++.++...... ....
T Consensus 103 ~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 180 (632)
T PRK07529 103 GEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVL-AALPELRTVVEVDLARYLPGPKRLAVPL 180 (632)
T ss_pred HHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHH-hcCCcceeEEEecCcccccccccccccc
Confidence 99999 568999999999999999999999999975432 1221111 1224455666554321000 0000
Q ss_pred --hhCCcceeeHHHHHhccccccc-ccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCc
Q 007672 191 --VQTGIKPYSWDEFLHLGKVNEM-EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267 (594)
Q Consensus 191 --~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~ 267 (594)
........+|.+.+........ ......++++++++|||||||.||+|.+||++++..+......+ .+.+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~~d 255 (632)
T PRK07529 181 IRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGPGD 255 (632)
T ss_pred cccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCCCC
Confidence 0012234456665554322211 12234679999999999999999999999999998887766655 678899
Q ss_pred EEEEecChhHHHHHHH-HHHhhhcCcEEEEecC----C---hHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhch
Q 007672 268 VYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339 (594)
Q Consensus 268 ~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~----~---~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 339 (594)
++++.+|++|.++... .+.++..|+++++.+. + ...+++.++++++|++.++|+++..|.+....
T Consensus 256 ~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------- 328 (632)
T PRK07529 256 TVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD------- 328 (632)
T ss_pred EEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-------
Confidence 9999999999998875 6778999999998753 2 36789999999999999999999988642110
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccC
Q 007672 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE 419 (594)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE 419 (594)
..++ ++||.+++||+++++++.+.+.+.+++++++.||+||
T Consensus 329 -------------------------------~~~~--------~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE 369 (632)
T PRK07529 329 -------------------------------GHDI--------SSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTE 369 (632)
T ss_pred -------------------------------CCCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccc
Confidence 0112 2899999999999999999999989999999999999
Q ss_pred CCCceeccCCCCccccCccccCccCceEEeeecCCCCC--CCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccc
Q 007672 420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY--SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH 496 (594)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~--~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~ 496 (594)
++.++...........+++|.|+|+++++|+..++++. .+++.|+.|||+|+|++++.||++++. +...| .+|||+
T Consensus 370 ~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~ 448 (632)
T PRK07529 370 ATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLN 448 (632)
T ss_pred cCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCceE
Confidence 99877766544443458999999999999976333331 455667999999999999999998754 44555 789999
Q ss_pred cCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--ccceeee
Q 007672 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--KVGILEW 568 (594)
Q Consensus 497 TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~~~~~~~ 568 (594)
|||+|++|+||++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|+|.+++ +++++... ..+..++
T Consensus 449 TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l 527 (632)
T PRK07529 449 TGDLGRIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAEL 527 (632)
T ss_pred cCcEEEEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHHH
Confidence 9999999999999999999999995 8999999999999999999999999998874 44443221 1111111
Q ss_pred ---------------EeeeecCceeeecccccccccccc
Q 007672 569 ---------------SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 569 ---------------~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
..+.....||+|++||+.|+++|+
T Consensus 528 ~~~~~~~l~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~ 566 (632)
T PRK07529 528 LAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRR 566 (632)
T ss_pred HHHHHHhcchhccCCcEEEEecCCCCCCCCcccHHHHHH
Confidence 124445689999999999998875
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=550.35 Aligned_cols=496 Identities=16% Similarity=0.139 Sum_probs=381.1
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
...+.+.++|+++++.+|+++|+++. +..+|..+.+||+||.+++.++|++|++.|+++||+|+|+++|++++++++
T Consensus 49 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~ 125 (628)
T TIGR02316 49 GRTNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAM 125 (628)
T ss_pred CEeeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 34567788999999999999999986 444455689999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH---------HHHhcccccccccccEEEEecCCcHHHHHH
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 189 (594)
+||+++|++++|+++.++.+++.+++++++++++|+++... ..+..++.........++.++......
T Consensus 126 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~--- 202 (628)
T TIGR02316 126 LACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM--- 202 (628)
T ss_pred HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc---
Confidence 99999999999999999999999999999999999986431 111111111112344555554321100
Q ss_pred HhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHH-HhhhhhhhccccCCCCCCcE
Q 007672 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVDDV 268 (594)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~-~~~~~~~~~~~~~~~~~~~~ 268 (594)
........+|+++.........+.....++++++++|||||||.||||+++|.+++.. .......+ ++.++|+
T Consensus 203 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~ 276 (628)
T TIGR02316 203 -RLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQV 276 (628)
T ss_pred -CcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcE
Confidence 0000112356666543322222223346789999999999999999999999998644 33333333 6788999
Q ss_pred EEEecChhHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 007672 269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (594)
Q Consensus 269 ~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~ 342 (594)
+++..|+.|..++.. ++.++..|+++++.++ ++..+++.|+++++|+++++|++++.|.+....
T Consensus 277 ~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------- 346 (628)
T TIGR02316 277 MFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA---------- 346 (628)
T ss_pred EEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc----------
Confidence 999999999988754 6778999999998763 688999999999999999999999887642110
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCC
Q 007672 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422 (594)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~ 422 (594)
.....+++ +||.+++||+++++++.+++.+.++..+++.||+||++.
T Consensus 347 -------------------------~~~~~~l~--------~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~ 393 (628)
T TIGR02316 347 -------------------------WLRKHDLS--------SLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGW 393 (628)
T ss_pred -------------------------ccccCCcc--------ceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCc
Confidence 01112233 899999999999999999999988999999999999986
Q ss_pred ceeccCCC---CccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccC---CcccccCCCchhhhhcc----cC
Q 007672 423 PTTVCFPD---EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----ID 492 (594)
Q Consensus 423 ~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~~----~~ 492 (594)
.+...... .....+++|.|++|++++|+|..++.. ++.|+.|||+++|| +.+.||+++++.+.+.+ .+
T Consensus 394 ~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~--~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~ 471 (628)
T TIGR02316 394 PVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRP--CGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKR 471 (628)
T ss_pred eeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCC--CCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCC
Confidence 44333222 122347899999999999999224444 44568999999998 57899999988776654 56
Q ss_pred CccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccccc---
Q 007672 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKV--- 563 (594)
Q Consensus 493 g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~--- 563 (594)
+||+|||+|++|+||+|+++||.||+||+ +|++|+|.|||++|.+||+|.||+|+|++++ ++++......
T Consensus 472 ~~~~TGD~g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~ 550 (628)
T TIGR02316 472 PLYSSFDWGIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAG 550 (628)
T ss_pred CEEECCceEEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccc
Confidence 79999999999999999999999999996 7999999999999999999999999999885 3333322110
Q ss_pred ----------ce-----eeeEeee------ecCceeeecccccccccccc
Q 007672 564 ----------GI-----LEWSCWF------IPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 564 ----------~~-----~~~~~~~------~p~~i~~~~~gk~~r~~~~~ 592 (594)
.+ ..+..|+ ....||+|++||+.|+.+++
T Consensus 551 ~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~ 600 (628)
T TIGR02316 551 DAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQA 600 (628)
T ss_pred cccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHH
Confidence 00 1123344 44569999999999998874
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=484.14 Aligned_cols=477 Identities=19% Similarity=0.224 Sum_probs=400.6
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
...++.++|..+|+++||++|+++. + +.+||.||.++++++|+.|++.|+++||+|++.+||..+|++++|
T Consensus 26 ~d~~l~d~L~~~A~~~pdriAv~d~---~------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~F 96 (542)
T COG1021 26 QDRTLTDILTDHAARYPDRIAVIDG---E------RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFF 96 (542)
T ss_pred cCCcHHHHHHHHHhhcCCceEEecC---c------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHH
Confidence 4578999999999999999999964 3 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH----HHHhcccccccccccEEEEecCCcHHHHHHHhhCCc
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 195 (594)
|++++|+.+|..-|.....+|..+.+.+.++.+|++.... ..+.+.+....+.++++++.++....
T Consensus 97 ALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~---------- 166 (542)
T COG1021 97 ALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP---------- 166 (542)
T ss_pred HHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc----------
Confidence 9999999999888888889999999999999999887432 22233333455788888887554321
Q ss_pred ceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecCh
Q 007672 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (594)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 275 (594)
...+..+... .....+..+.++++++++..+.||||.||.|..||.....++..-.+.| +++..++++|.+|.
T Consensus 167 -~~~~~~~~~~-a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~ 239 (542)
T COG1021 167 -SVLEAALCHP-AGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPA 239 (542)
T ss_pred -chhhhhhhCc-cccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEeccc
Confidence 1122222222 2333445677889999999999999999999999999999999999998 89999999999999
Q ss_pred hHHHHHHH--HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007672 276 AHILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (594)
Q Consensus 276 ~~~~~~~~--~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (594)
.|.+.+.. .+..++.|+++|+.+. ++...+..|+++++|+...+|.+...+++....
T Consensus 240 AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~-------------------- 299 (542)
T COG1021 240 AHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEW-------------------- 299 (542)
T ss_pred ccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhc--------------------
Confidence 99999875 7788999999999877 999999999999999999999999988765443
Q ss_pred HHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC-
Q 007672 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE- 431 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~- 431 (594)
...+++ |||.+-+||+.+++++.+++...+||.+-+.|||.|.- +......+.
T Consensus 300 -----------------~~~~Ls--------SLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGL-vnyTRLDDp~ 353 (542)
T COG1021 300 -----------------ERADLS--------SLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGL-VNYTRLDDPP 353 (542)
T ss_pred -----------------ccCCch--------heeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhh-hcccccCCch
Confidence 333455 99999999999999999999999999999999999953 333333332
Q ss_pred ccccCccccCc-cCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcE
Q 007672 432 MCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV 509 (594)
Q Consensus 432 ~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l 509 (594)
.....+-|+|+ |.-+++|+| .+++ ++++|+.|+|.++||..++|||+.|+.++.+| .+|||+|||++++|+||+|
T Consensus 354 E~i~~TQGrPlsP~DEvrvvD-~dg~--pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl 430 (542)
T COG1021 354 EIIIHTQGRPLSPDDEVRVVD-ADGN--PVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYL 430 (542)
T ss_pred HheeecCCCcCCCcceeEEec-CCCC--CCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceE
Confidence 22236778774 788999999 6665 45566999999999999999999999999999 9999999999999999999
Q ss_pred EEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc-cceeee---------Eeeee
Q 007672 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK-VGILEW---------SCWFI 573 (594)
Q Consensus 510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~-~~~~~~---------~~~~~ 573 (594)
.+.||.||+|+ ++|++|..+|||+.|..||.|.+|++++.+|+ |+++..++. +...++ ..|++
T Consensus 431 ~V~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~~~~qlr~~L~~~GlAa~K~ 509 (542)
T COG1021 431 VVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAAQLRRFLRERGLAAFKL 509 (542)
T ss_pred EEEeeehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCCCHHHHHHHHHHcchhhhcC
Confidence 99999999999 89999999999999999999999999999996 677666554 333222 33666
Q ss_pred cC------ceeeecccccccccccc
Q 007672 574 PG------TLFTCSATKLYPLRAEE 592 (594)
Q Consensus 574 p~------~i~~~~~gk~~r~~~~~ 592 (594)
|+ ++|.|+-||+..+.+|+
T Consensus 510 PDrie~v~~~P~T~VGKIdKk~Lr~ 534 (542)
T COG1021 510 PDRIEFVDSLPLTAVGKIDKKALRR 534 (542)
T ss_pred CcceeecccCCCcccccccHHHHHH
Confidence 65 47888899999988875
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-63 Score=547.03 Aligned_cols=491 Identities=18% Similarity=0.214 Sum_probs=383.0
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
.+...++|+++++++|+++|+++. +...+..+++||+||.+++.++|++|++.|+++||+|+++++|+++++++++|
T Consensus 66 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 142 (637)
T PRK00174 66 LNVSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLA 142 (637)
T ss_pred eEHHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 345678898999999999999986 43334567999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH---------HHHhcccccccccccEEEEecCCcHHHHHHHh
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 191 (594)
|+++|++++|+++..+.+++.+++++++++++|+++... ..+...+ ...+.++.++..+...... .
T Consensus 143 ~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~ 217 (637)
T PRK00174 143 CARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEAL-ANCPSVEKVIVVRRTGGDV----D 217 (637)
T ss_pred HHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHH-HhCCCccEEEEEcCCCCCc----C
Confidence 999999999999999999999999999999999986532 1111111 1223455565554321100 0
Q ss_pred hCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhh-hhhhccccCCCCCCcEEE
Q 007672 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMTVDDVYL 270 (594)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 270 (594)
........|+++.... ..........++++++++|||||||.||+|+++|.+++...... ...+ ++..+|+++
T Consensus 218 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~ 291 (637)
T PRK00174 218 WVEGRDLWWHELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDVYW 291 (637)
T ss_pred cCCCCcccHHHHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcEEE
Confidence 0011223456655432 22222334567899999999999999999999999987654332 2222 677889999
Q ss_pred EecChhHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 007672 271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344 (594)
Q Consensus 271 ~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (594)
+..|++|..++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|++++.|.+.....
T Consensus 292 ~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----------- 360 (637)
T PRK00174 292 CTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEH----------- 360 (637)
T ss_pred EcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcc-----------
Confidence 9999999988764 6778999999998753 6899999999999999999999999886531110
Q ss_pred HHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC---CceEeeecccCCC
Q 007672 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETC 421 (594)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~yG~tE~~ 421 (594)
....+++ +||.++++|+++++++.+++.+.++ +++++.||+||++
T Consensus 361 ------------------------~~~~~~~--------~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~ 408 (637)
T PRK00174 361 ------------------------PKKYDLS--------SLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETG 408 (637)
T ss_pred ------------------------cccCCcc--------ceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccC
Confidence 0111222 8999999999999999999988775 7899999999999
Q ss_pred CceeccCCCC-ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cCCcc
Q 007672 422 GPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWF 495 (594)
Q Consensus 422 ~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~~g~~ 495 (594)
..+....+.. ....+++|.|++|++++|+| +++..+ +.|+.|||+++| |+++.|||++++.+.+.+ .+|||
T Consensus 409 ~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~--~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~ 485 (637)
T PRK00174 409 GIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPL--EGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMY 485 (637)
T ss_pred CceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCC--CCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEE
Confidence 8765543322 23347899999999999999 666554 456899999999 689999999998877765 47999
Q ss_pred ccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc-----
Q 007672 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG----- 564 (594)
Q Consensus 496 ~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~----- 564 (594)
+|||+|++|+||++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++++++ +++++......
T Consensus 486 ~TGDl~~~d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~ 564 (637)
T PRK00174 486 FTGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDEL 564 (637)
T ss_pred ECCceEEEcCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHH
Confidence 99999999999999999999999997 7999999999999999999999999998774 44443322111
Q ss_pred ---e-----eeeEe------eeecCceeeecccccccccccc
Q 007672 565 ---I-----LEWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 565 ---~-----~~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+ ..+.. +.....||+|++||+.|+.+++
T Consensus 565 ~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~ 606 (637)
T PRK00174 565 RKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRK 606 (637)
T ss_pred HHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHH
Confidence 1 11222 4445678999999999998875
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-63 Score=538.96 Aligned_cols=484 Identities=18% Similarity=0.194 Sum_probs=391.1
Q ss_pred CcCcHHHHHHHHHH-cCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 40 DLNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 40 ~~~tl~~~l~~~a~-~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
..+.+.+++.++++ .+||++|+++. +.. ..+++||.||.++++++|.+|.++|+++||+|+++++|++++++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 115 (570)
T PRK04319 41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL 115 (570)
T ss_pred ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence 45667789998887 47999999876 433 2368999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+||+++|++++|+++..+++++.++++.++++.+|++......... ...+..+.++.+++... ......
T Consensus 116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~ 184 (570)
T PRK04319 116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA---DDLPSLKHVLLVGEDVE--------EGPGTL 184 (570)
T ss_pred HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch---hcCCCceEEEEECCCcC--------CCcCcc
Confidence 9999999999999999999999999999999999998876543321 12234455555543211 111234
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
+|.+++..... ........++++++++|||||||.||+|+++|+++++.+......+ ++.++|++++..|++|.
T Consensus 185 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~ 258 (570)
T PRK04319 185 DFNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWV 258 (570)
T ss_pred CHHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHh
Confidence 56666544322 2223344678999999999999999999999999998877766655 67889999999999999
Q ss_pred HHHHH-HHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007672 279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (594)
Q Consensus 279 ~~~~~-~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (594)
.++.. ++.++..|+++++... ++..+++.|+++++|+++++|.+++.|.+.....
T Consensus 259 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------- 316 (570)
T PRK04319 259 TGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDL---------------------- 316 (570)
T ss_pred hCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcc----------------------
Confidence 88765 6778999999998754 8999999999999999999999999986421100
Q ss_pred HhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCcccc
Q 007672 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435 (594)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~ 435 (594)
....+++ +||.+++||+++++++.+++.+.++.++++.||+||++..............
T Consensus 317 -------------~~~~~~~--------~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~ 375 (570)
T PRK04319 317 -------------VKKYDLS--------SLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKP 375 (570)
T ss_pred -------------cccCCcc--------cceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCC
Confidence 0111222 8999999999999999999999889999999999999987655444333345
Q ss_pred CccccCccCceEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEe
Q 007672 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513 (594)
Q Consensus 436 ~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~G 513 (594)
+++|.|+++++++|+| +++... +.|+.|||+++| ++++.||+++++.+.+.|.+|||+|||+|++++||+++++|
T Consensus 376 ~~~G~p~~g~~~~i~d-~~~~~~--~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~G 452 (570)
T PRK04319 376 GSMGKPLPGIEAAIVD-DQGNEL--PPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQG 452 (570)
T ss_pred CcCcCCCCCCEEEEEC-CCCCCC--CCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEe
Confidence 8999999999999999 666554 456899999997 89999999999999999999999999999999999999999
Q ss_pred ccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccccc--c------ee-----eeE-----
Q 007672 514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKV--G------IL-----EWS----- 569 (594)
Q Consensus 514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~--~------~~-----~~~----- 569 (594)
|.+|+|+. +|++|+|.+||++|.+||.|.+++|+|++++ +++++..... + +. .+.
T Consensus 453 R~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P 531 (570)
T PRK04319 453 RVDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAP 531 (570)
T ss_pred cCCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCC
Confidence 99999996 8999999999999999999999999998875 2233322110 0 11 112
Q ss_pred -eeeecCceeeecccccccccccc
Q 007672 570 -CWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 570 -~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.+.....||+|++||+.|+.+|+
T Consensus 532 ~~i~~v~~iP~t~~GKv~r~~L~~ 555 (570)
T PRK04319 532 REIEFKDKLPKTRSGKIMRRVLKA 555 (570)
T ss_pred cEEEEeCCCCCCCchhhhHHHHHH
Confidence 25566779999999999999875
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-62 Score=530.31 Aligned_cols=479 Identities=23% Similarity=0.278 Sum_probs=385.3
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
.++.+.|+++++.+|+++|+++. +...+.++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus 24 ~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~ 100 (547)
T PRK13295 24 RTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLAC 100 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence 57999999999999999999876 544556689999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH-----HHHhcccccccccccEEEEecCCcHHHHHHHhhCCcc
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (594)
+++|++++|++|..+.+++.++++.++++++++++... ..+ ..+......+..++.++...
T Consensus 101 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------- 166 (547)
T PRK13295 101 SRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMA-RRLRPELPALRHVVVVGGDG------------- 166 (547)
T ss_pred HhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHH-HHHhhhCCCcceEEEecCCC-------------
Confidence 99999999999999999999999999999999987531 111 11112224455565554321
Q ss_pred eeeHHHHHhccc-------ccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEE
Q 007672 197 PYSWDEFLHLGK-------VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY 269 (594)
Q Consensus 197 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (594)
..+|.++..... ...........+++++++|||||||.||+|+++|.+++..+......+ ++..++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~ 241 (547)
T PRK13295 167 ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDVI 241 (547)
T ss_pred ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCeE
Confidence 112333332110 011112234678999999999999999999999999998888766655 67889999
Q ss_pred EEecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 007672 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (594)
Q Consensus 270 ~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (594)
++.+|++|..++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+........
T Consensus 242 l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~------------- 308 (547)
T PRK13295 242 LMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESG------------- 308 (547)
T ss_pred EEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccC-------------
Confidence 99999999998765 6778999999998776 89999999999999999999999988865321110
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceecc
Q 007672 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427 (594)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 427 (594)
.++ ++||.+++||+++++++.+.+.+.+++.+++.||+||++.++...
T Consensus 309 ------------------------~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 356 (547)
T PRK13295 309 ------------------------RPV--------SSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTK 356 (547)
T ss_pred ------------------------CCc--------ccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeecc
Confidence 011 289999999999999999999988899999999999998876554
Q ss_pred CCCC-ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCC
Q 007672 428 FPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN 506 (594)
Q Consensus 428 ~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~d 506 (594)
.... .....++|.|+++++++|+| +++. +++.|+.|||+|+|+.++.||+++++.+... .+|||+|||+|++++|
T Consensus 357 ~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~~ 432 (547)
T PRK13295 357 LDDPDERASTTDGCPLPGVEVRVVD-ADGA--PLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDAD 432 (547)
T ss_pred CCCcchhccCccccccCCcEEEEEC-CCCC--CCCCCCCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEcCC
Confidence 4322 22236889999999999999 6554 4445689999999999999999999888765 6899999999999999
Q ss_pred CcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc--cce---------eeeE
Q 007672 507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK--VGI---------LEWS 569 (594)
Q Consensus 507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~--~~~---------~~~~ 569 (594)
|++++.||.+|+|++ +|++|+|.+||++|.++|+|.+|+|+++++. +++++.+.. ... ..+.
T Consensus 433 g~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~~l~ 511 (547)
T PRK13295 433 GYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVA 511 (547)
T ss_pred ceEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHHHHHHHHHhccCc
Confidence 999999999999996 8999999999999999999999999998764 333332211 110 0122
Q ss_pred ------eeeecCceeeecccccccccccc
Q 007672 570 ------CWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 570 ------~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
++...+.||+|++||++|+++++
T Consensus 512 ~~~~P~~i~~v~~lP~t~sgK~~r~~L~~ 540 (547)
T PRK13295 512 KQYIPERLVVRDALPRTPSGKIQKFRLRE 540 (547)
T ss_pred cccCCcEEEEeccCCCCCCccccHHHHHH
Confidence 25556779999999999998865
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-62 Score=532.90 Aligned_cols=477 Identities=19% Similarity=0.193 Sum_probs=370.8
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCC----CCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKF----GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~----~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~ 116 (594)
..++.++|.+.++++|+++|+++. ++.+ ..++.+||+||.++++++|++|.+.|+++||+|+++++|++++++
T Consensus 5 ~~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~ 81 (552)
T PRK09274 5 MANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFA 81 (552)
T ss_pred hhhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHH
Confidence 367889999999999999999875 3321 224579999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcch--hHHHHhcccccccccccEEEEecCCcHHHHHHHhhCC
Q 007672 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK--KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (594)
Q Consensus 117 ~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 194 (594)
+++||+++|++++|++|.++.+++.+++++++++++|++.. ....+.... ....+.++.++... .
T Consensus 82 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----------~ 148 (552)
T PRK09274 82 LTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRL----------L 148 (552)
T ss_pred HHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheecccccc----------c
Confidence 99999999999999999999999999999999999998752 111111100 01222333332210 0
Q ss_pred cceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecC
Q 007672 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274 (594)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 274 (594)
.....++++...............++++++++|||||||.||+|+++|+++...+......+ ++.+++++++.+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p 223 (552)
T PRK09274 149 WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFP 223 (552)
T ss_pred cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccC
Confidence 01123444432221122222345678999999999999999999999999999888877766 7888999999999
Q ss_pred hhHHHHHHHHHHhhhcCcEEEEec--------CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007672 275 LAHILDRVIEEYFFRRGASVGYYH--------GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (594)
Q Consensus 275 l~~~~~~~~~l~~l~~G~~~~~~~--------~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (594)
++|.+++ ..|+++++.. .++..+++.|+++++|+++++|++++.|.+.......
T Consensus 224 l~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~----------- 285 (552)
T PRK09274 224 LFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGI----------- 285 (552)
T ss_pred HHHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCC-----------
Confidence 9876543 4577776643 2789999999999999999999999998764321111
Q ss_pred HHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc--CCceEeeecccCCCCce
Q 007672 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPT 424 (594)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~ 424 (594)
++ ++||.+++||+++++++.+.+.+.+ |+++++.||+||+++++
T Consensus 286 --------------------------~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 331 (552)
T PRK09274 286 --------------------------KL--------PSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPIS 331 (552)
T ss_pred --------------------------CC--------chhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeE
Confidence 12 2899999999999999999999988 57999999999998876
Q ss_pred eccCCC---------CccccCccccCccCceEEeeecCCC-------CCCCCCCCCCceEEEccCCcccccCCCchhhhh
Q 007672 425 TVCFPD---------EMCMVGTAGPVSVYSELRLEEVPEM-------GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488 (594)
Q Consensus 425 ~~~~~~---------~~~~~~~~G~~~~~~~~~i~d~~~~-------~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~ 488 (594)
+..... ......++|+|+++++++|+| +++ +..+++.|+.|||+++|+.++.||+++++.+..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd-~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~ 410 (552)
T PRK09274 332 SIESREILFATRAATDNGAGICVGRPVDGVEVRIIA-ISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRL 410 (552)
T ss_pred eecchhhhccccccccCCCCcccCccCCCceEEEEe-ccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhh
Confidence 544321 011124789999999999999 432 234566779999999999999999999999987
Q ss_pred cc---cCC--ccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc-----hhhcc
Q 007672 489 SI---IDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS-----CAMRR 558 (594)
Q Consensus 489 ~~---~~g--~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~-----~~~~~ 558 (594)
.| .+| ||+|||+|++|+||+|++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++++++ +++++
T Consensus 411 ~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~ 489 (552)
T PRK09274 411 AKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVE 489 (552)
T ss_pred hhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEE
Confidence 76 356 9999999999999999999999999996 7999999999999999999999999998764 23332
Q ss_pred cccc--ccee----e-------e------EeeeecCceeee--cccccccccccc
Q 007672 559 RHQK--VGIL----E-------W------SCWFIPGTLFTC--SATKLYPLRAEE 592 (594)
Q Consensus 559 ~~~~--~~~~----~-------~------~~~~~p~~i~~~--~~gk~~r~~~~~ 592 (594)
.... .+.. + + ..+.....||+| ++||+.|+++++
T Consensus 490 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~ 544 (552)
T PRK09274 490 LEPGVACSKSALYQELRALAAAHPHTAGIERFLIHPSFPVDIRHNAKIFREKLAV 544 (552)
T ss_pred ccCccccchHHHhhhhHHHHHhcCCCcceeEEeccCCCCccccccccccHHHHHH
Confidence 2211 1110 0 0 346677789998 799999999876
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-62 Score=529.84 Aligned_cols=501 Identities=22% Similarity=0.263 Sum_probs=378.4
Q ss_pred CccccccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHH-cCCCC
Q 007672 22 GPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEP 100 (594)
Q Consensus 22 ~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gi~~ 100 (594)
..++++.....++|.. ...++.+.+... +.+|+++|+++. ++ + .++||.||.++++++|++|.+ .|+++
T Consensus 22 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~-~~~~~~~a~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~~G~~~ 91 (560)
T PLN02574 22 TGIYSSKHPPVPLPSD--PNLDAVSFIFSH-HNHNGDTALIDS---ST--G--FSISYSELQPLVKSMAAGLYHVMGVRQ 91 (560)
T ss_pred CeeecCCCCCCCCCCC--CCCCHHHHHhcC-cccCCCCEEEEC---CC--C--CcccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4566655422222222 122333333333 678999999854 22 2 369999999999999999999 89999
Q ss_pred CCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEec
Q 007672 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180 (594)
Q Consensus 101 gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~ 180 (594)
||+|+|+++|+.+++++++||+++|++++|++|..+.+++.++++.++++++|++.+....+... ... ++.++
T Consensus 92 gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~ 164 (560)
T PLN02574 92 GDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL------GVP-VIGVP 164 (560)
T ss_pred CCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc------CCc-EEecC
Confidence 99999999999999999999999999999999999999999999999999999998765554221 111 22222
Q ss_pred CCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhcccc
Q 007672 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE 260 (594)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~ 260 (594)
..... . ........|+.+..... .........++++++++|||||||.||+|++||++++..+..+........
T Consensus 165 ~~~~~----~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~ 238 (560)
T PLN02574 165 ENYDF----D-SKRIEFPKFYELIKEDF-DFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQY 238 (560)
T ss_pred ccccc----c-cCccCcccHHHHhhcCC-cccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhcccccc
Confidence 11000 0 00011234555544321 111223346789999999999999999999999999988765543211111
Q ss_pred CCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhc
Q 007672 261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338 (594)
Q Consensus 261 ~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 338 (594)
......++++..+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|.++..|.+.....
T Consensus 239 ~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----- 313 (560)
T PLN02574 239 EYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV----- 313 (560)
T ss_pred ccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc-----
Confidence 12235688999999999999875 4556788999988876 9999999999999999999999999987532110
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecc
Q 007672 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGL 417 (594)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~ 417 (594)
...++ +++|.+++||+++++++.+.+.+.+ ++.+++.||+
T Consensus 314 -------------------------------~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~ 354 (560)
T PLN02574 314 -------------------------------CGEVL--------KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGM 354 (560)
T ss_pred -------------------------------ccCcc--------ccceEEEEecccCCHHHHHHHHHHCCCCcEEecccc
Confidence 00112 2899999999999999999998877 7899999999
Q ss_pred cCCCCceeccCC-CCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCcc
Q 007672 418 TETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 495 (594)
Q Consensus 418 tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~ 495 (594)
||++.+...... ......+++|.++++++++|+|.+++ .+++.|+.|||||+|++++.||+++++.+.+.| .+|||
T Consensus 355 tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g--~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~ 432 (560)
T PLN02574 355 TESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTG--CLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWL 432 (560)
T ss_pred cccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCC--cCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCc
Confidence 999876543222 22233478999999999999993344 355567899999999999999999999999888 79999
Q ss_pred ccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc--ccccee-
Q 007672 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH--QKVGIL- 566 (594)
Q Consensus 496 ~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~--~~~~~~- 566 (594)
+|||+|++|+||++++.||.+|+|++ +|++|+|.+||++|.+||+|.|++|++++++ ++++..+ ...+..
T Consensus 433 ~TGDlg~~~~~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~ 511 (560)
T PLN02574 433 RTGDIAYFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEA 511 (560)
T ss_pred ccceEEEEECCCeEEEEecchhheEE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCCHHH
Confidence 99999999999999999999999997 7999999999999999999999999998874 3344322 111111
Q ss_pred -------eeEe------eeecCceeeecccccccccccc
Q 007672 567 -------EWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 567 -------~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.+.. +.....||+|++||++|+.+++
T Consensus 512 l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~ 550 (560)
T PLN02574 512 VINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKR 550 (560)
T ss_pred HHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHH
Confidence 1122 4455679999999999999875
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=532.16 Aligned_cols=441 Identities=22% Similarity=0.277 Sum_probs=350.4
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
...++.++|+++++++|+++|+++. + ..+.++++||+||.++++++|++|.+.|+++||+|+|+++|+++++++++
T Consensus 37 ~~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~l 112 (614)
T PRK08180 37 YPRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLAL 112 (614)
T ss_pred cCccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHH
Confidence 3578999999999999999999864 3 33456899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCC-----hhHHHHHHhhcCceEEEEcchh-HHHHhcccccccccccEEEEecCCcHHHHHHHhhC
Q 007672 120 ACNALSLICVPLYDTLG-----PGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~-----~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 193 (594)
||+++|++++|++|.++ .+++.+++++++++++|+++.. .......... ... .++..+....
T Consensus 113 A~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~--------- 180 (614)
T PRK08180 113 AAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADV-EVVAVRGAVP--------- 180 (614)
T ss_pred HHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCc-eEEEecCCCC---------
Confidence 99999999999999988 7899999999999999998642 2221111111 111 2233222100
Q ss_pred CcceeeHHHHHhcccccc--cccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCC--CCcEE
Q 007672 194 GIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT--VDDVY 269 (594)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~--~~~~~ 269 (594)
.....+|+++........ .......++++++++|||||||.||+|++||+++++.+......+ ... ..+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~~ 255 (614)
T PRK08180 181 GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPVL 255 (614)
T ss_pred CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcEE
Confidence 001235666554321111 111234678999999999999999999999999998887765544 332 56899
Q ss_pred EEecChhHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 007672 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (594)
Q Consensus 270 ~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (594)
++++|++|.+++.. .+.+++.|+++++.+. ++..+++.++++++|+++++|.++..|++.......
T Consensus 256 l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~-------- 327 (614)
T PRK08180 256 VDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAA-------- 327 (614)
T ss_pred EEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchh--------
Confidence 99999999999865 5678999999998753 345788999999999999999999998764322110
Q ss_pred HHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHh----cC--CceEeeecc
Q 007672 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC--AFLVQGYGL 417 (594)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~----~~--~~i~~~yG~ 417 (594)
....++ ++||.+++||+++++++.+.+.+. +| +.+++.||+
T Consensus 328 -------------------------~~~~~~--------~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~ 374 (614)
T PRK08180 328 -------------------------LRRRFF--------SRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGM 374 (614)
T ss_pred -------------------------hhhhhc--------cceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecc
Confidence 011112 389999999999999999988864 33 689999999
Q ss_pred cCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccc
Q 007672 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH 496 (594)
Q Consensus 418 tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~ 496 (594)
||++.+++...... ...+++|+|++|++++|+| + +..|||+++|++++.||+++++.+.+.| .||||+
T Consensus 375 TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~---------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~ 443 (614)
T PRK08180 375 TETAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-V---------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYR 443 (614)
T ss_pred cccCCceEeccccc-CCCCcccCccCCcEEEEec-C---------CCCcEEEEecCccchhhcCChhHhHhhcccCCcee
Confidence 99987766544333 2348999999999999998 2 2469999999999999999999999999 699999
Q ss_pred cCceEEE----cCCCcEEEEeccCceeEcCCceeec--hHHHHHHHhcCCCccceEEeecCCc
Q 007672 497 TGDIGQI----LPNGVVKIIDRKKNLIKISQGEYVA--LEYLENVYCVAPIIEDPQVNVSCSS 553 (594)
Q Consensus 497 TGDlg~~----~~dG~l~~~GR~~d~i~~~~G~~v~--~~~iE~~l~~~p~V~~~~V~g~~~~ 553 (594)
|||+|++ |+||+|++.||.+|+|++++|++|+ |.|+|.++.+||.|.||+|+|++++
T Consensus 444 TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~ 506 (614)
T PRK08180 444 SGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRD 506 (614)
T ss_pred ccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCC
Confidence 9999999 4689999999999999888899877 7788999999999999999999886
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=535.09 Aligned_cols=494 Identities=16% Similarity=0.152 Sum_probs=378.7
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
..|...++|+++++.+|+++|+++. +..++..+.+||+||.+++.++|+.|++.|+++||+|+++++|+++++++++
T Consensus 51 ~~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 127 (629)
T PRK10524 51 RTNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAML 127 (629)
T ss_pred EeeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3466788999999999999999986 4444556899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH---------HHHhcccccccccccEEEEecCCcHHHHHHH
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 190 (594)
||+++|++++|+++..+.+++.+++++++++++|+++... ..+.++..........++.++......
T Consensus 128 A~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---- 203 (629)
T PRK10524 128 ACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM---- 203 (629)
T ss_pred HHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----
Confidence 9999999999999999999999999999999999976421 111111111112334555554321100
Q ss_pred hhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhh-hhhhhccccCCCCCCcEE
Q 007672 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY 269 (594)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 269 (594)
.........|+++...............++++++++|||||||.||+|+++|.+++..... ....+ ++.++|++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~~~d~~ 278 (629)
T PRK10524 204 ARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGKAGETF 278 (629)
T ss_pred CcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCCEE
Confidence 0001112346655543222222222346789999999999999999999999997654433 22233 67888999
Q ss_pred EEecChhHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 007672 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (594)
Q Consensus 270 ~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (594)
++..|+.|..++.. ++.++..|+++++... ++..+++.|+++++|+++++|++++.|.+....
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------- 347 (629)
T PRK10524 279 FCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA----------- 347 (629)
T ss_pred EEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc-----------
Confidence 99999999888654 6678999999998753 688999999999999999999999887542100
Q ss_pred HHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCc
Q 007672 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP 423 (594)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~ 423 (594)
..+..+++ +||.+++||+++++++.+++.+.+++++++.||+||++..
T Consensus 348 ------------------------~~~~~~l~--------~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~ 395 (629)
T PRK10524 348 ------------------------LLRKHDLS--------SLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWP 395 (629)
T ss_pred ------------------------cccccChh--------heeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccch
Confidence 01112233 8999999999999999999999899999999999999853
Q ss_pred eeccCCC---CccccCccccCccCceEEeeecC-CCCCCCCCCCCCceEEEccC---CcccccCCCchhhhhcc----cC
Q 007672 424 TTVCFPD---EMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----ID 492 (594)
Q Consensus 424 ~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~-~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~~----~~ 492 (594)
....... .....+++|.|+++++++|+| + ++.. ++.|+.|||+++|| .++.||+++++...+.+ .+
T Consensus 396 ~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g~~--~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (629)
T PRK10524 396 ILAIARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTGEP--CGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGR 472 (629)
T ss_pred hhcCCCCcccCcCCCCCcccCcCCceEEEEe-CCCCCC--CCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCC
Confidence 3322221 122347899999999999999 5 5544 45668999999998 57889999988776554 36
Q ss_pred CccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc--
Q 007672 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG-- 564 (594)
Q Consensus 493 g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~-- 564 (594)
|||+|||+|++|+||++++.||.||+|++ +|++|+|.+||++|.+||+|.||+|+|++++ ++++.......
T Consensus 473 ~~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~ 551 (629)
T PRK10524 473 QVYSTFDWGIRDADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLA 551 (629)
T ss_pred cEEEcCCcEEEcCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccc
Confidence 89999999999999999999999999997 7999999999999999999999999998875 33333221100
Q ss_pred -----------ee-----ee------EeeeecCceeeecccccccccccc
Q 007672 565 -----------IL-----EW------SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 565 -----------~~-----~~------~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+. .+ ..+...+.||+|++||++|+.+++
T Consensus 552 ~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 601 (629)
T PRK10524 552 DREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQA 601 (629)
T ss_pred cccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHH
Confidence 00 11 225556779999999999998875
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-62 Score=526.82 Aligned_cols=487 Identities=19% Similarity=0.174 Sum_probs=372.5
Q ss_pred CCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 007672 34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ 113 (594)
Q Consensus 34 ~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~ 113 (594)
+-+.+....++.+.|.++|+++|+++|+++. ++. +.+||.||.++++++|+.|.+.|+++|++|+++++|+++
T Consensus 6 ~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e 78 (540)
T PRK05857 6 FQAMPQLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPE 78 (540)
T ss_pred ccccccCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHH
Confidence 3345566778999999999999999999865 432 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhC
Q 007672 114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193 (594)
Q Consensus 114 ~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 193 (594)
+++++|||+++|++++|+++..+.+++.++++.++++.+|+++...... ..+........ ++.++......
T Consensus 79 ~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~------- 149 (540)
T PRK05857 79 TYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS-SAVPEALHSIP-VIAVDIAAVTR------- 149 (540)
T ss_pred HHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcc-ccccccccccc-eeEeecccccc-------
Confidence 9999999999999999999999999999999999999999997653221 11111111222 22222111000
Q ss_pred CcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEec
Q 007672 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273 (594)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (594)
. +...... ...........+++++++|||||||.||+|.++|+++.++....... .........++++++.+
T Consensus 150 ----~-~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 221 (540)
T PRK05857 150 ----E-SEHSLDA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKE-GLNWVTWVVGETTYSPL 221 (540)
T ss_pred ----c-ccccccc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhc-cccccccccCceeeecC
Confidence 0 0000000 00111223467899999999999999999999999998765433211 00011455678999999
Q ss_pred ChhHHHHHHHHHHhhhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007672 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (594)
Q Consensus 274 pl~~~~~~~~~l~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (594)
|++|..++...+.+++.|+++++.+.++..+++.|+++++|+++++|.+++.|.+......
T Consensus 222 p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~------------------- 282 (540)
T PRK05857 222 PATHIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN------------------- 282 (540)
T ss_pred CccccchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC-------------------
Confidence 9999999877778899999988766689999999999999999999999998865321110
Q ss_pred HHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC--
Q 007672 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-- 431 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-- 431 (594)
.++ +++|.+++||++++....+++ +.+++++++.||+||++..........
T Consensus 283 ------------------~~~--------~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~~YG~TE~~~~~~~~~~~~~~ 335 (540)
T PRK05857 283 ------------------ATV--------PSLRLVGYGGSRAIAADVRFI-EATGVRTAQVYGLSETGCTALCLPTDDGS 335 (540)
T ss_pred ------------------CcC--------ccceEEEEcCccCCchhHHHH-HHhCCeeecccCCCcCCceeeeccccccc
Confidence 112 289999999999988777644 456999999999999986544332221
Q ss_pred --ccccCccccCccCceEEeeecCCCCCC-C---CCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcC
Q 007672 432 --MCMVGTAGPVSVYSELRLEEVPEMGYS-P---LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505 (594)
Q Consensus 432 --~~~~~~~G~~~~~~~~~i~d~~~~~~~-~---~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~ 505 (594)
....+++|+|++|++++|++ +++... + .+.++.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+
T Consensus 336 ~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~ 414 (540)
T PRK05857 336 IVKIEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERRE 414 (540)
T ss_pred ccccccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcC
Confidence 11347899999999999999 554421 1 2345789999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc------e--------
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG------I-------- 565 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~------~-------- 565 (594)
||++++.||.+|+|++ +|++|+|.+||++|..||+|.+|+|+++++. ++++......+ +
T Consensus 415 ~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~ 493 (540)
T PRK05857 415 DGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARF 493 (540)
T ss_pred CceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHHHHHHHHHHH
Confidence 9999999999999996 8999999999999999999999999999874 22222111111 0
Q ss_pred -eee------EeeeecCceeeecccccccccccc
Q 007672 566 -LEW------SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 566 -~~~------~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
..+ ..+.....||+|++||+.|+.+++
T Consensus 494 ~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~ 527 (540)
T PRK05857 494 RRESEPMARPSTIVIVTDIPRTQSGKVMRASLAA 527 (540)
T ss_pred HhhhccccCCeEEEEhhcCCCCCCcceeHHHHHH
Confidence 011 235556679999999999999875
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-61 Score=524.61 Aligned_cols=490 Identities=20% Similarity=0.255 Sum_probs=378.3
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
...|+.++|.+.++.+|+++|++.. + +.+||.||.+++.++|++|.+ .|+++||+|+++++|++++++++
T Consensus 22 ~~~~~~~~l~~~a~~~p~~~al~~~---~------~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~ 92 (562)
T PRK05677 22 EYPNIQAVLKQSCQRFADKPAFSNL---G------KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAV 92 (562)
T ss_pred ccCcHHHHHHHHHHhCCCCeeEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence 3468999999999999999999864 3 579999999999999999997 59999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcH---HHHHHH-----
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA---EQKEMA----- 190 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~----- 190 (594)
|||+++|++++|++|..+.+++.+++++++++++|++......+.+... . ...+.++..+.... ......
T Consensus 93 la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (562)
T PRK05677 93 FGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLP-K-TGVKHVIVTEVADMLPPLKRLLINAVVK 170 (562)
T ss_pred HHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhh-c-cCcceeEEecccccccchhhhhcccchh
Confidence 9999999999999999999999999999999999998765443322111 1 12333333221100 000000
Q ss_pred -------hhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCC
Q 007672 191 -------VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM 263 (594)
Q Consensus 191 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~ 263 (594)
.........+.+.+..............++++++++|||||||.||+|+++|++++..+......+. ..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~---~~~ 247 (562)
T PRK05677 171 HVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMG---SNL 247 (562)
T ss_pred hccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhc---cCC
Confidence 0000112344554443322222223456799999999999999999999999999887665444331 122
Q ss_pred C-CCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhch
Q 007672 264 T-VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339 (594)
Q Consensus 264 ~-~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 339 (594)
. ..+++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.....
T Consensus 248 ~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-------- 319 (562)
T PRK05677 248 NEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA-------- 319 (562)
T ss_pred CCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc--------
Confidence 3 3468899999999999865 5556777887776653 88999999999999999999999988764211
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccC
Q 007672 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE 419 (594)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE 419 (594)
....+++ ++|.+++||+++++++.+.+.+.+++++++.||+||
T Consensus 320 -----------------------------~~~~~~~--------~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE 362 (562)
T PRK05677 320 -----------------------------FRKLDFS--------ALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTE 362 (562)
T ss_pred -----------------------------cccCChh--------hceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccc
Confidence 0001122 899999999999999999999988999999999999
Q ss_pred CCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccC
Q 007672 420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498 (594)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TG 498 (594)
++.++........ ..+++|.|+++++++|+| +++.. ++.|+.|||+++|+.++.||+++++.+.+.| .+|||+||
T Consensus 363 ~~~~~~~~~~~~~-~~~~vG~~~~~~~v~i~d-~~~~~--~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG 438 (562)
T PRK05677 363 TSPVVSVNPSQAI-QVGTIGIPVPSTLCKVID-DDGNE--LPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTG 438 (562)
T ss_pred cCcceeecCccCC-CCCccCccCCCCEEEEEC-CCCCC--CCCCCCeEEEEecCccchhhcCCchhhhhccCCCCccccc
Confidence 9887665544322 337899999999999999 66554 4556899999999999999999999999998 68999999
Q ss_pred ceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccc--cccccee----
Q 007672 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRR--HQKVGIL---- 566 (594)
Q Consensus 499 Dlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~--~~~~~~~---- 566 (594)
|+|++|+||++++.||.+|+|++ +|++|+|.+||++|++||+|.+++|+|++++ ++++.. .......
T Consensus 439 Dlg~~~~~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~ 517 (562)
T PRK05677 439 DIALIQEDGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQVME 517 (562)
T ss_pred ceEEECCCCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCCHHHHHH
Confidence 99999999999999999999997 7999999999999999999999999998874 223321 1111111
Q ss_pred ----eeEe------eeecCceeeeccccccccccccC
Q 007672 567 ----EWSC------WFIPGTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 567 ----~~~~------~~~p~~i~~~~~gk~~r~~~~~~ 593 (594)
.+.. +...+.||+|++||++|+++|+.
T Consensus 518 ~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~ 554 (562)
T PRK05677 518 HMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDE 554 (562)
T ss_pred HHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHH
Confidence 1122 44556699999999999999863
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-61 Score=515.99 Aligned_cols=456 Identities=25% Similarity=0.321 Sum_probs=376.5
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
++++.+.|.++++++||++|+++. + +.+||.||.++++++|+.|.+.|+++||+|+++++|+.+++++++|
T Consensus 1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (483)
T PRK03640 1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA 71 (483)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999865 3 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|+++..+.+++..++++++++.+++++.......... ...+
T Consensus 72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~ 121 (483)
T PRK03640 72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF 121 (483)
T ss_pred HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence 9999999999999999999999999999999999876543321100 0013
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
+++................+++++++|||||||.||+|+++|.++...+......+ ++..+|++++.+|++|..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 196 (483)
T PRK03640 122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISG 196 (483)
T ss_pred HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHH
Confidence 33332211111122234678999999999999999999999999988776665555 7889999999999999999
Q ss_pred HHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 007672 281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359 (594)
Q Consensus 281 ~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (594)
+...+.++..|+++++.+. ++..+++.++++++|++.++|+++..|.......
T Consensus 197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-------------------------- 250 (483)
T PRK03640 197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-------------------------- 250 (483)
T ss_pred HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------
Confidence 8878888999999999877 9999999999999999999999999886432110
Q ss_pred cCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCC-CccccCcc
Q 007672 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGTA 438 (594)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~~ 438 (594)
....++|.+++||+++++++.+.+... ++++++.||+||++.......+. .....+++
T Consensus 251 --------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v 309 (483)
T PRK03640 251 --------------------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSA 309 (483)
T ss_pred --------------------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCc
Confidence 001289999999999999999988874 99999999999987654433332 33345899
Q ss_pred ccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCce
Q 007672 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 518 (594)
Q Consensus 439 G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~ 518 (594)
|+|+++++++|++ ++ .+++.++.|||+++|++++.||+++++.+...|.+|||+|||++++++||++++.||.+|+
T Consensus 310 G~p~~~~~~~i~~-~~---~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~~~ 385 (483)
T PRK03640 310 GKPLFPCELKIEK-DG---VVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDL 385 (483)
T ss_pred ccccCCcEEEEec-CC---CcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCCEEEeecccCe
Confidence 9999999999988 43 3455678999999999999999999999999999999999999999999999999999999
Q ss_pred eEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccceee--------e------EeeeecCcee
Q 007672 519 IKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGILE--------W------SCWFIPGTLF 578 (594)
Q Consensus 519 i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~~~--------~------~~~~~p~~i~ 578 (594)
+++ +|.+|+|.+||+.+.++|+|.+++|++.+++ ++++..+...+..+ + ..+.....+|
T Consensus 386 i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP 464 (483)
T PRK03640 386 IIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEVTEEELRHFCEEKLAKYKVPKRFYFVEELP 464 (483)
T ss_pred EEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCCCHHHHHHHHHHhccCCCCCcEEEEeCCCC
Confidence 996 8999999999999999999999999998764 33333332222211 2 2245556899
Q ss_pred eecccccccccccc
Q 007672 579 TCSATKLYPLRAEE 592 (594)
Q Consensus 579 ~~~~gk~~r~~~~~ 592 (594)
+|++||+.|+++++
T Consensus 465 ~t~~gK~~r~~l~~ 478 (483)
T PRK03640 465 RNASGKLLRHELKQ 478 (483)
T ss_pred CCCccceeHHHHHH
Confidence 99999999998764
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-61 Score=518.42 Aligned_cols=483 Identities=24% Similarity=0.333 Sum_probs=395.3
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
.++.++.+.|.+.++.+|+++|+++. + +++||+||.+.+.++|..|.+.|+++||+|+++++|++++++++
T Consensus 2 ~~~~~i~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~ 72 (513)
T PRK07656 2 NEWMTLPELLARAARRFGDKEAYVFG---D------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA 72 (513)
T ss_pred CccccHHHHHHHHHHHCCCCeEEEeC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence 35688999999999999999999875 3 47999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+||+++|++++|+++..+.+++..++++++++++++++.......... ......+.++........ .......
T Consensus 73 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~ 145 (513)
T PRK07656 73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSAT-TRLPALEHVVICETEEDD------PHTEKMK 145 (513)
T ss_pred HHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHH-hccCCccEEEEEcCcccc------cCccccc
Confidence 999999999999999999999999999999999999987655443221 223344555544433211 0011234
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
+|+++...... .........+++++++|||||||.||+|.++|.++...+......+ ++..++++++.+|++|.
T Consensus 146 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 219 (513)
T PRK07656 146 TFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHV 219 (513)
T ss_pred cHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHH
Confidence 66776654322 1233445788999999999999999999999999998888777666 78899999999999999
Q ss_pred HHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 279 ~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
+++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|.++..+.+......
T Consensus 220 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------- 277 (513)
T PRK07656 220 FGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSA---------------------- 277 (513)
T ss_pred HHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCC----------------------
Confidence 99875 6778999999988765 89999999999999999999999999875322110
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCC-ceEeeecccCCCCceeccCCCCccc-
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCM- 434 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~-~i~~~yG~tE~~~~~~~~~~~~~~~- 434 (594)
.++ +++|.+++||+++++++.+.+.+.++. .+++.||+||++++...........
T Consensus 278 ---------------~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~ 334 (513)
T PRK07656 278 ---------------EDL--------SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKT 334 (513)
T ss_pred ---------------CCc--------cceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccc
Confidence 012 289999999999999999999998888 8999999999988877665543322
Q ss_pred -cCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEEE
Q 007672 435 -VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII 512 (594)
Q Consensus 435 -~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~ 512 (594)
.+++|.|+++++++|+| +++..+ +.|+.|||+++|+.++.||++++..+...+ .+|||+|||+|++++||.+++.
T Consensus 335 ~~~~vG~~~~~~~~~i~d-~~~~~~--~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~ 411 (513)
T PRK07656 335 VAGTIGTAIAGVENKIVN-ELGEEV--PVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIV 411 (513)
T ss_pred cCCCccccCCCcEEEEEC-CCCCCC--CCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEE
Confidence 57899999999999999 665544 456899999999999999999999988888 4999999999999999999999
Q ss_pred eccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--ccce--------eeeEe------
Q 007672 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--KVGI--------LEWSC------ 570 (594)
Q Consensus 513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~~~~--------~~~~~------ 570 (594)
||.+|+|++ +|.+++|.+||++|.++|+|.+++|++.+++ ++++..+. ..+. ..++.
T Consensus 412 GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~ 490 (513)
T PRK07656 412 DRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCREHLAKYKVPRS 490 (513)
T ss_pred ecccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCCE
Confidence 999999997 8999999999999999999999999987764 34444321 1111 11222
Q ss_pred eeecCceeeecccccccccccc
Q 007672 571 WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 571 ~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+.....||+|++||+.|+++++
T Consensus 491 i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 491 IEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred EEEecCCCCCCccceeHHHHhc
Confidence 4455689999999999998874
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-61 Score=517.95 Aligned_cols=485 Identities=22% Similarity=0.256 Sum_probs=382.2
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
..++|.++|++.++++|+++|+++. + ..++++.+||.||.++++++|+.|.+.|+++||+|+++++|+.+++++++
T Consensus 5 ~~~~l~~~~~~~a~~~p~~~a~~~~---~-~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~l 80 (517)
T PRK08008 5 GGQHLRQMWDDLADVYGHKTALIFE---S-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWF 80 (517)
T ss_pred ccccHHHHHHHHHHHCCCceEEEcc---c-CCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3468999999999999999999876 4 34556899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceee
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (594)
||+++|++++++++..+.+++.+++++++++.+|++.+....+.+...+.....+.++..+.... ......+
T Consensus 81 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 152 (517)
T PRK08008 81 GLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALP--------ADDGVSS 152 (517)
T ss_pred HHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCc--------ccccccC
Confidence 99999999999999999999999999999999999987665543332222234445555443211 0012234
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHH
Q 007672 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (594)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 279 (594)
++++............+..++++++++|||||||.||+|++||.++........... .+..++++++.+|++|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~ 227 (517)
T PRK08008 153 FTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-----ALRDDDVYLTVMPAFHID 227 (517)
T ss_pred HHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-----CCCCCCeEEEecCcHHHH
Confidence 444443322111122344678999999999999999999999999986544322222 567889999999999987
Q ss_pred HHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 007672 280 DRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (594)
Q Consensus 280 ~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (594)
+... ++.++..|+++++.+. ++..+++.++++++|++.++|.+++.+.........
T Consensus 228 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------- 285 (517)
T PRK08008 228 CQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAND---------------------- 285 (517)
T ss_pred HHHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcccc----------------------
Confidence 7665 6668889999999877 899999999999999999999999887542110000
Q ss_pred hccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCc
Q 007672 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437 (594)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~ 437 (594)
. ..+++.++++ .++++.....+.+.+++++++.||+||++..+....+.......+
T Consensus 286 ---------------~--------~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~ 341 (517)
T PRK08008 286 ---------------R--------QHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPS 341 (517)
T ss_pred ---------------c--------cccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCc
Confidence 0 0157777665 478888888888888999999999999987665554444444578
Q ss_pred cccCccCceEEeeecCCCCCCCCCCCCCceEEEcc---CCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEEEe
Q 007672 438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG---KTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID 513 (594)
Q Consensus 438 ~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g---~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~G 513 (594)
+|.|+++++++|+| +++.. ++.|+.|||+++| ++++.||+++++.+.+.| .+|||+|||+|++|+||++++.|
T Consensus 342 ~G~~~~g~~~~i~d-~~~~~--~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~G 418 (517)
T PRK08008 342 IGRPGFCYEAEIRD-DHNRP--LPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVD 418 (517)
T ss_pred cccCCCCcEEEEEC-CCCCC--CCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEee
Confidence 99999999999999 66544 4456899999998 689999999999999998 78999999999999999999999
Q ss_pred ccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc--ccee--------ee------Eee
Q 007672 514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK--VGIL--------EW------SCW 571 (594)
Q Consensus 514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~--~~~~--------~~------~~~ 571 (594)
|.+|+|++ +|++|+|.+||++|.++|.|.+|+|+|++++ ++++..+.. .+.. .+ ..+
T Consensus 419 R~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~ 497 (517)
T PRK08008 419 RRCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSYL 497 (517)
T ss_pred cccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCcEE
Confidence 99999996 7999999999999999999999999998874 233332211 1111 11 224
Q ss_pred eecCceeeeccccccccccc
Q 007672 572 FIPGTLFTCSATKLYPLRAE 591 (594)
Q Consensus 572 ~~p~~i~~~~~gk~~r~~~~ 591 (594)
.....||+|++||+.|+.+|
T Consensus 498 ~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 498 EIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred EEeccCCCCCccceehhhcC
Confidence 55567999999999999875
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=533.77 Aligned_cols=458 Identities=17% Similarity=0.154 Sum_probs=354.5
Q ss_pred CccccccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCC
Q 007672 22 GPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101 (594)
Q Consensus 22 ~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~g 101 (594)
.+.|+|+...+..-.. +...++.++|.++++.+|+++|+++....+...+.++.+||+||.++++++|++|.+. +++|
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~g 79 (631)
T PRK07769 2 NMAFHNPFDVNGKIRF-PPNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPG 79 (631)
T ss_pred CcccCCcccccccccc-cccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCC
Confidence 3567777777666543 4557899999999999999999987510011234567899999999999999999987 8999
Q ss_pred CEEEEEeCCchhHHHHHHHHHhcCCEEeec-CCCCC--hhHHHHHHhhcCceEEEEcchhHHHHhccccccc-ccccEEE
Q 007672 102 CRVGIYGANCPQWVEAMEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMV 177 (594)
Q Consensus 102 d~V~i~~~n~~~~~~~~~A~~~~G~~~v~i-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~v~ 177 (594)
|+|+|+++|+++++++++||+++|++++|+ ++..+ .+++.+++++++++++|+++.....+........ .....++
T Consensus 80 d~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (631)
T PRK07769 80 DRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVI 159 (631)
T ss_pred CEEEEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEE
Confidence 999999999999999999999999999999 45554 5789999999999999998876544322111000 0112233
Q ss_pred EecCCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhc
Q 007672 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257 (594)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~ 257 (594)
.++.... . . ..........++++++++|||||||.||+|++||+++...+......+
T Consensus 160 ~~~~~~~--------------~----~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~- 216 (631)
T PRK07769 160 AVDAVPD--------------E----V----GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL- 216 (631)
T ss_pred Ecccccc--------------c----c----ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-
Confidence 3222100 0 0 000111234678999999999999999999999999998887766655
Q ss_pred cccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecC-----ChHHHHHHHhhhcC---eEEEechHHHHHHHHH
Q 007672 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKP---TLLAGVPRVFEKIHEG 329 (594)
Q Consensus 258 ~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~---t~l~~~P~~~~~l~~~ 329 (594)
++..++++++++|++|.+|+...+.++..|++++++.. ++..+++.+.++++ +++.++|.++..+...
T Consensus 217 ----~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~ 292 (631)
T PRK07769 217 ----EGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAA 292 (631)
T ss_pred ----CCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHh
Confidence 67889999999999999999877777788999988742 78889999999886 7899999987766431
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc--
Q 007672 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-- 407 (594)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-- 407 (594)
.... .......+++ +||.+++||+++++++.+.+.+.|
T Consensus 293 ~~~~--------------------------------~~~~~~~~l~--------~lr~~~~gg~~l~~~~~~~~~~~~~~ 332 (631)
T PRK07769 293 RGLP--------------------------------KDGEPPLDLS--------NVKGLLNGSEPVSPASMRKFNEAFAP 332 (631)
T ss_pred hccc--------------------------------hhcccCcchh--------heeeEEeccCCCCHHHHHHHHHHHhh
Confidence 1000 0000012333 899999999999999999998877
Q ss_pred -CC---ceEeeecccCCCCceeccCCCCc--------------------------cccCccccCccCceEEeeecCCCCC
Q 007672 408 -CA---FLVQGYGLTETCGPTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPEMGY 457 (594)
Q Consensus 408 -~~---~i~~~yG~tE~~~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~~~i~d~~~~~~ 457 (594)
|+ .+++.||+||++..++....... ....++|+|.++.+++|+|.+++.
T Consensus 333 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~- 411 (631)
T PRK07769 333 YGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETAS- 411 (631)
T ss_pred cCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCc-
Confidence 33 59999999999876554332110 012478999999999999933444
Q ss_pred CCCCCCCCceEEEccCCcccccCCCchhhhhccc------------------CCccccCceEEEcCCCcEEEEeccCcee
Q 007672 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------------------DGWFHTGDIGQILPNGVVKIIDRKKNLI 519 (594)
Q Consensus 458 ~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~------------------~g~~~TGDlg~~~~dG~l~~~GR~~d~i 519 (594)
+++.|+.|||+++|++++.|||++++.+++.|. +|||+|||+|+++ ||+|+++||.||+|
T Consensus 412 -~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~I 489 (631)
T PRK07769 412 -ELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLV 489 (631)
T ss_pred -CCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEE
Confidence 445568999999999999999999999998883 3899999999995 99999999999999
Q ss_pred EcCCceeechHHHHHHHhc-CCCccc--eEEeecCC
Q 007672 520 KISQGEYVALEYLENVYCV-APIIED--PQVNVSCS 552 (594)
Q Consensus 520 ~~~~G~~v~~~~iE~~l~~-~p~V~~--~~V~g~~~ 552 (594)
|+ +|++|+|.|||++|.+ ||.|.+ |+|+++++
T Consensus 490 k~-~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d 524 (631)
T PRK07769 490 II-DGRNHYPQDLEYTAQEATKALRTGYVAAFSVPA 524 (631)
T ss_pred EE-CCeeeCHHHHHHHHHhccccccCCcEEEEEecc
Confidence 96 8999999999999996 899998 99999888
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-61 Score=533.06 Aligned_cols=487 Identities=20% Similarity=0.172 Sum_probs=370.4
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
-|+.+.+..+ .+|+++|+++. + ..+..+++||.||.+++.++|+.|++.|+++||+|+|+++|+++++++++||
T Consensus 86 ~n~~~~~~~~--~~~~~~Al~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~ 159 (655)
T PRK03584 86 LNYAENLLRH--RRDDRPAIIFR---G-EDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLAT 159 (655)
T ss_pred eeHHHHhhcc--CCCCCeEEEEE---C-CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 3455544433 57999999986 4 3455689999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH---------HHHhcccccccccccEEEEecCCcHHHHHHHhh
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ 192 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 192 (594)
+++|++++|+++.++.+++.+++++++++++|+++... ..+.. .....+.++.++.++..... ....
T Consensus 160 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~---~~~~ 235 (655)
T PRK03584 160 ASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAE-LRAALPSLEHVVVVPYLGPA---AAAA 235 (655)
T ss_pred HHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHH-HHhcCCCccEEEEEecCCCc---cccc
Confidence 99999999999999999999999999999999987532 11111 11122344555555432110 0000
Q ss_pred CCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHH-HhhhhhhhccccCCCCCCcEEEE
Q 007672 193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVDDVYLS 271 (594)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 271 (594)
.......|+++................+++++++|||||||.||||+++|.+++.. +......+ ++.++|++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~ 310 (655)
T PRK03584 236 ALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGPGDRFFW 310 (655)
T ss_pred ccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence 11123457766652222222334456799999999999999999999999987644 44444444 6788999999
Q ss_pred ecChhHHHHHHHHHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007672 272 FLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (594)
Q Consensus 272 ~~pl~~~~~~~~~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (594)
..++.|.... ..+.++..|+++++.++ ++..+++.|+++++|++..+|++++.+.+...
T Consensus 311 ~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--------------- 374 (655)
T PRK03584 311 YTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL--------------- 374 (655)
T ss_pred cCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC---------------
Confidence 9999887543 35578999999998753 78999999999999999999999988754100
Q ss_pred HHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc--CCceEeeecccCCCCce
Q 007672 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPT 424 (594)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~ 424 (594)
. .....+++ +||.+++||+++++++.+++.+.+ ++.+.+.||+||+++..
T Consensus 375 -------------------~-~~~~~~l~--------sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~ 426 (655)
T PRK03584 375 -------------------V-PGETHDLS--------ALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCF 426 (655)
T ss_pred -------------------C-ccccCChh--------heEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhccc
Confidence 0 00112333 899999999999999999998887 47899999999986544
Q ss_pred eccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccC--CcccccCCCchhhh--hcc---cCCcccc
Q 007672 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ESI---IDGWFHT 497 (594)
Q Consensus 425 ~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~--~v~~gY~~~~~~~~--~~~---~~g~~~T 497 (594)
....+......+++|.|++|++++|+| +++... .|+.|||+|+|+ +++.||+++++.++ ..+ .+|||+|
T Consensus 427 ~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~---~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~T 502 (655)
T PRK03584 427 VGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV---VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRH 502 (655)
T ss_pred ccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC---CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeec
Confidence 333222233448899999999999999 666544 468999999996 79999999987543 222 3688999
Q ss_pred CceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccce------
Q 007672 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGI------ 565 (594)
Q Consensus 498 GDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~------ 565 (594)
||+|++|+||+|+++||.||+||+ +|++|+|.|||++|.+||+|.||+|+|++++ +++++.+.....
T Consensus 503 GDl~~~d~dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~ 581 (655)
T PRK03584 503 GDWIEITEHGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRA 581 (655)
T ss_pred CCeEEECCCCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHH
Confidence 999999999999999999999996 8999999999999999999999999999883 334332221110
Q ss_pred --e-----eeEe------eeecCceeeecccccccccccc
Q 007672 566 --L-----EWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 566 --~-----~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
. .+.. +...+.||+|++||++|+.+|+
T Consensus 582 ~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~ 621 (655)
T PRK03584 582 RIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKK 621 (655)
T ss_pred HHHHHHHhhCCCCcCCCEEEECCCCCCCCCccchHHHHHH
Confidence 0 1122 4555679999999999998875
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-61 Score=519.18 Aligned_cols=497 Identities=25% Similarity=0.323 Sum_probs=389.2
Q ss_pred CCCccccccccCCCCCCCC-CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCC
Q 007672 20 SVGPVYRNLLASNGFPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98 (594)
Q Consensus 20 ~~~~~~r~~~~~~~~~~~~-~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi 98 (594)
+++=+||+-+ +..+ +...++.+++.++++++||++|+++. +. + +++||.||.++++++|++|.+.|+
T Consensus 5 ~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~---~~--~--~~~ty~el~~~~~~la~~L~~~g~ 72 (537)
T PLN02246 5 SEEFIFRSKL-----PDIYIPNHLPLHDYCFERLSEFSDRPCLIDG---AT--G--RVYTYADVELLSRRVAAGLHKLGI 72 (537)
T ss_pred cceeEecCCC-----CCCCCCCCCcHHHHHHHHHHhCCCCeEEEec---CC--C--ceeeHHHHHHHHHHHHHHHHHhCC
Confidence 4455666553 3333 44578999999999999999999854 21 2 589999999999999999999999
Q ss_pred CCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEE
Q 007672 99 EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 178 (594)
Q Consensus 99 ~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~ 178 (594)
++||+|+++++|+++++++++||+++|++++|++|..+.+++..+++.++++++|++......+..... . .. ..++.
T Consensus 73 ~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~-~~-~~~i~ 149 (537)
T PLN02246 73 RQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAE-D-DG-VTVVT 149 (537)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhh-c-CC-ceEEE
Confidence 999999999999999999999999999999999999999999999999999999998876655432211 0 11 23444
Q ss_pred ecCCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhcc
Q 007672 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258 (594)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~ 258 (594)
+++... ....+.++.... ....+.....++++++++|||||||.||+|+++|++++..+........
T Consensus 150 ~~~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~- 216 (537)
T PLN02246 150 IDDPPE-----------GCLHFSELTQAD-ENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN- 216 (537)
T ss_pred eCCCCC-----------CceeHHHHhcCC-CCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccc-
Confidence 443211 123344444322 1122223456789999999999999999999999999887765432110
Q ss_pred ccCCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHh
Q 007672 259 FEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336 (594)
Q Consensus 259 ~~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~ 336 (594)
....+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|.+....
T Consensus 217 ~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~---- 292 (537)
T PLN02246 217 PNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV---- 292 (537)
T ss_pred cccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccc----
Confidence 0125788999999999999999865 5667999999999877 899999999999999999999999887642110
Q ss_pred hchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeee
Q 007672 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGY 415 (594)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~y 415 (594)
...++ +++|.+++||+++++++.+.+.+.+ +..+++.|
T Consensus 293 ---------------------------------~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~Y 331 (537)
T PLN02246 293 ---------------------------------EKYDL--------SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGY 331 (537)
T ss_pred ---------------------------------cccCc--------cceeEEEEecCcCCHHHHHHHHHHcCCCeEeccc
Confidence 00112 2899999999999999999999987 77899999
Q ss_pred cccCCCCceeccCC---C-CccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-
Q 007672 416 GLTETCGPTTVCFP---D-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490 (594)
Q Consensus 416 G~tE~~~~~~~~~~---~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~- 490 (594)
|+||++.+++.... . .....+++|+|+++++++|+|.+++ .+++.|+.|||+++|+.++.||+++++.+.+.+
T Consensus 332 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~--~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~ 409 (537)
T PLN02246 332 GMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETG--ASLPRNQPGEICIRGPQIMKGYLNDPEATANTID 409 (537)
T ss_pred cccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCC--CcCCCCCceEEEEECCchhccccCCchhhhhccc
Confidence 99999876544321 1 1123378999999999999993333 345566899999999999999999999999888
Q ss_pred cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc--
Q 007672 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK-- 562 (594)
Q Consensus 491 ~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~-- 562 (594)
.+|||+|||+|++++||++++.||.+|+|++ +|++|+|.+||++|.++|+|.+|+|++++++ ++++.....
T Consensus 410 ~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 488 (537)
T PLN02246 410 KDGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSE 488 (537)
T ss_pred CCCCeeecceEEEeCCCeEEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCC
Confidence 7899999999999999999999999999997 7999999999999999999999999998764 333332211
Q ss_pred ccee--------eeE------eeeecCceeeecccccccccccc
Q 007672 563 VGIL--------EWS------CWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 563 ~~~~--------~~~------~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.... .+. ++.....||+|++||+.|+.+++
T Consensus 489 ~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~ 532 (537)
T PLN02246 489 ITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRA 532 (537)
T ss_pred CCHHHHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHH
Confidence 1111 112 35555789999999999998864
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-61 Score=522.21 Aligned_cols=486 Identities=24% Similarity=0.291 Sum_probs=386.7
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
+..++.++|.++++.+|+++|+++. + +.+||+||.+++.++|.+|.+. |+++|++|+|+++|++++++++
T Consensus 8 ~~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~ 78 (546)
T PRK08314 8 PETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAY 78 (546)
T ss_pred CCCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHH
Confidence 3568999999999999999999875 4 4799999999999999999999 9999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcH--H-----HHHHH-
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--E-----QKEMA- 190 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-----~~~~~- 190 (594)
+||+++|++++|++|..+.+++.++++.++++++|++......+....... .++.++....... . .....
T Consensus 79 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (546)
T PRK08314 79 YAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWLR 156 (546)
T ss_pred HHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCcccccc
Confidence 999999999999999999999999999999999999987766553322111 2233332211000 0 00000
Q ss_pred ------hhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCC
Q 007672 191 ------VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264 (594)
Q Consensus 191 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~ 264 (594)
.........|+++..... ........++++++++|||||||.||+|+++|++++..+......+ ++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~ 229 (546)
T PRK08314 157 AEPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NST 229 (546)
T ss_pred cccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCC
Confidence 000112335555554321 1223345788999999999999999999999999999888776665 778
Q ss_pred CCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 007672 265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (594)
Q Consensus 265 ~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~ 342 (594)
.+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..++....
T Consensus 230 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~----------- 298 (546)
T PRK08314 230 PESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG----------- 298 (546)
T ss_pred CCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC-----------
Confidence 9999999999999999865 6678999999999876 89999999999999999999999988754210
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCC
Q 007672 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422 (594)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~ 422 (594)
....+++ ++|.+++||+++++++.+++.+.+++++++.||+||++.
T Consensus 299 --------------------------~~~~~~~--------~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~ 344 (546)
T PRK08314 299 --------------------------LAERDLS--------SLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMA 344 (546)
T ss_pred --------------------------ccccCch--------hhheeeeccccCCHHHHHHHHHHcCCcEEeccccccccc
Confidence 1111222 799999999999999999999888999999999999988
Q ss_pred ceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--C--CccccC
Q 007672 423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTG 498 (594)
Q Consensus 423 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~--~--g~~~TG 498 (594)
.......+.. ...++|.|+++++++|+|.+++. +++.|..|||+++|++++.||+++++.+.+.|. + +||+||
T Consensus 345 ~~~~~~~~~~-~~~~~G~~~~g~~~~i~d~~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TG 421 (546)
T PRK08314 345 QTHSNPPDRP-KLQCLGIPTFGVDARVIDPETLE--ELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTG 421 (546)
T ss_pred ceecCCCcCC-CCCccCcccCCeEEEEEeCCCCc--CCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecC
Confidence 7766544433 23789999999999999933343 444568999999999999999999999988872 3 499999
Q ss_pred ceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc----cce---
Q 007672 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK----VGI--- 565 (594)
Q Consensus 499 Dlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~----~~~--- 565 (594)
|+|++++||++++.||.||+|++ +|++|+|.+||++|.++|+|.+++|++.++. ++++..... ...
T Consensus 422 Dl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~l 500 (546)
T PRK08314 422 DLGRMDEEGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEI 500 (546)
T ss_pred CEEEEcCCCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCCHHHH
Confidence 99999999999999999999997 7999999999999999999999999998774 333332211 110
Q ss_pred -----eeeEe------eeecCceeeecccccccccccc
Q 007672 566 -----LEWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 566 -----~~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
..+.. +.....||+|.+||+.|+.+++
T Consensus 501 ~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~ 538 (546)
T PRK08314 501 IAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQE 538 (546)
T ss_pred HHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHH
Confidence 12233 4445679999999999998864
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-61 Score=518.21 Aligned_cols=472 Identities=18% Similarity=0.155 Sum_probs=376.4
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
.++.++|.++++++||++|++.. + +.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 113 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA 113 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence 57999999999999999999854 3 47999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (594)
+++|++++|+++.++.+++.++++.++++++|++......+..... ..+....++...+... ...++
T Consensus 114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~ 180 (537)
T PRK13382 114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALA-DCPQATRIVAWTDEDH------------DLTVE 180 (537)
T ss_pred HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHh-hccccceEEEecCCcc------------cccHH
Confidence 9999999999999999999999999999999999776544432211 1122233333322110 12344
Q ss_pred HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHH
Q 007672 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281 (594)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 281 (594)
.+....... .....+++.++++|||||||.||+|+++|.+++.........+ .+..+++++...|++|.+++
T Consensus 181 ~~~~~~~~~---~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~ 252 (537)
T PRK13382 181 VLIAAHAGQ---RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGF 252 (537)
T ss_pred HHhhccCcC---CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHH
Confidence 443322111 1123467899999999999999999999999888777665554 56788999999999999998
Q ss_pred HHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc
Q 007672 282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360 (594)
Q Consensus 282 ~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (594)
...+.++..|+++++... ++..+++.|+++++|++.++|++++.|++.....
T Consensus 253 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------------------- 305 (537)
T PRK13382 253 SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV--------------------------- 305 (537)
T ss_pred HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchh---------------------------
Confidence 777888899999888765 8999999999999999999999999986532110
Q ss_pred CCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCcccc
Q 007672 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 440 (594)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~ 440 (594)
.+..++ .++|.+++||+++++++.+.+.+.++..+++.||+||++.++...........+++|.
T Consensus 306 --------~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~ 369 (537)
T PRK13382 306 --------RNRYSG--------RSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGR 369 (537)
T ss_pred --------cccCCc--------cceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccc
Confidence 001111 2799999999999999999999988999999999999998766544332334479999
Q ss_pred CccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCceeE
Q 007672 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520 (594)
Q Consensus 441 ~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~ 520 (594)
|+++++++|+| +++... +.|+.|||+++|++++.||+ ++.+. .+.+|||+|||++++|+||++++.||.||+|+
T Consensus 370 p~~~~~~~i~d-~~~~~~--~~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik 443 (537)
T PRK13382 370 PAEGTEIRILD-QDFREV--PTGEVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLDENGRLFVVGRDDEMIV 443 (537)
T ss_pred cCcCcEEEEEC-CCCCCC--CCCCeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEeCCCcEEEeccccceeE
Confidence 99999999999 666544 45689999999999999998 33333 35689999999999999999999999999999
Q ss_pred cCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc--ccee--------eeEe------eeecCcee
Q 007672 521 ISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK--VGIL--------EWSC------WFIPGTLF 578 (594)
Q Consensus 521 ~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~--~~~~--------~~~~------~~~p~~i~ 578 (594)
. +|++|+|.+||++|.+||+|.+|+|++++++ ++++..... .... .+.. +.....+|
T Consensus 444 ~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP 522 (537)
T PRK13382 444 S-GGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDNLANYKVPRDIVVLDELP 522 (537)
T ss_pred E-CCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHHHHHHHHHHhccCCCCCcEEEEeccCC
Confidence 5 8999999999999999999999999998875 333332211 1111 1122 44556799
Q ss_pred eeccccccccccccC
Q 007672 579 TCSATKLYPLRAEEC 593 (594)
Q Consensus 579 ~~~~gk~~r~~~~~~ 593 (594)
+|++||+.|++++++
T Consensus 523 ~t~~gK~~r~~L~~~ 537 (537)
T PRK13382 523 RGATGKILRRELQAR 537 (537)
T ss_pred CCCCCCCcHHhhCCC
Confidence 999999999999874
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-61 Score=524.77 Aligned_cols=492 Identities=25% Similarity=0.334 Sum_probs=385.8
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
...++.++|+++++++|+++|+++. + +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++
T Consensus 30 ~~~~l~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~l 100 (573)
T PRK05605 30 GDTTLVDLYDNAVARFGDRPALDFF---G------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFY 100 (573)
T ss_pred CcCCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 3458999999999999999999875 3 479999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHH---H---------
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ---K--------- 187 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~--------- 187 (594)
||+++|++++|++|.++.+++.+++++++++++|+++.....+...... .....++..+...... .
T Consensus 101 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 178 (573)
T PRK05605 101 AVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPA 178 (573)
T ss_pred HHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeeccccccccccccccccccc
Confidence 9999999999999999999999999999999999988765544322111 1222333332110000 0
Q ss_pred -----HHHhhCCcceeeHHHHHhcccccc---cccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccc
Q 007672 188 -----EMAVQTGIKPYSWDEFLHLGKVNE---MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259 (594)
Q Consensus 188 -----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~ 259 (594)
............|+++........ ........+++++++|||||||.||+|.+||++++..+......+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~- 257 (573)
T PRK05605 179 LRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPG- 257 (573)
T ss_pred ccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccc-
Confidence 000001123346776665422110 12233567899999999999999999999999998877654332210
Q ss_pred cCCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhh
Q 007672 260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337 (594)
Q Consensus 260 ~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 337 (594)
-....+++++.+|++|.+|+.. .+.++..|+++++.+. ++..+++.|+++++|++.++|.+++.|.+......
T Consensus 258 --~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--- 332 (573)
T PRK05605 258 --LGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG--- 332 (573)
T ss_pred --cCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC---
Confidence 1234689999999999999875 5567889999988776 99999999999999999999999999875322111
Q ss_pred chHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecc
Q 007672 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 417 (594)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~ 417 (594)
.+++ ++|.+++||+++++++.+.+.+.++..+++.||+
T Consensus 333 ----------------------------------~~~~--------~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~ 370 (573)
T PRK05605 333 ----------------------------------VDLS--------GVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGL 370 (573)
T ss_pred ----------------------------------CCch--------hccEEEECCCcCCHHHHHHHHHHhCCCeeccccc
Confidence 1122 7999999999999999999998889999999999
Q ss_pred cCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCcccc
Q 007672 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHT 497 (594)
Q Consensus 418 tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~T 497 (594)
||+++++...........+++|.|++++.++|+| +++...+++.|+.|||+++|+.++.||+++++.+.+.|.+|||+|
T Consensus 371 TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~T 449 (573)
T PRK05605 371 TETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRT 449 (573)
T ss_pred chhchhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCccc
Confidence 9999877665444333447899999999999999 554334556678999999999999999999999999998899999
Q ss_pred CceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc--cccceee--
Q 007672 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH--QKVGILE-- 567 (594)
Q Consensus 498 GDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~--~~~~~~~-- 567 (594)
||+|++|+||++++.||.+|+|+. +|++|+|.+||++|.+++.|.+++|+|++++ +++++.. ...+..+
T Consensus 450 GD~~~~~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~ 528 (573)
T PRK05605 450 GDVVVMEEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLR 528 (573)
T ss_pred CCEEEEcCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCCHHHHH
Confidence 999999999999999999999996 8999999999999999999999999998763 2222211 1111111
Q ss_pred ------eE------eeeecCceeeecccccccccccc
Q 007672 568 ------WS------CWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 568 ------~~------~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+. .+.....||+|.+||++|+.+++
T Consensus 529 ~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~ 565 (573)
T PRK05605 529 AYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVRE 565 (573)
T ss_pred HHHHHhCccccCCcEEEEeccCCCCCcccccHHHHHH
Confidence 12 24556679999999999998875
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-60 Score=524.79 Aligned_cols=466 Identities=23% Similarity=0.277 Sum_probs=362.1
Q ss_pred CCCCCCCCccccccccC----CCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHH
Q 007672 15 KDGKPSVGPVYRNLLAS----NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIV 90 (594)
Q Consensus 15 ~~~~~~~~~~~r~~~~~----~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la 90 (594)
-..+|+..+.+|+...+ .++|.. ....++.++|+++++++||++|+++. +...+.++.+||+||.++++++|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA 94 (624)
T PRK12582 19 LNWKPPDISVERRADGSIVIKSRHPLG-PYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALA 94 (624)
T ss_pred cccCCCceEEEEcCCceEEEecCCCCC-CcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHH
Confidence 34567777778876433 555544 34568999999999999999999875 43345678999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCCh-----hHHHHHHhhcCceEEEEcchh-HHHHhc
Q 007672 91 SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP-----GAVNFILDHAEIDFVFVQDKK-VKELLS 164 (594)
Q Consensus 91 ~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~-----~~l~~~l~~~~~~~ii~~~~~-~~~~~~ 164 (594)
++|++.|+++||+|+++++|+++++++++||+++|++++|++|.++. +++.++++.++++++|+++.. ......
T Consensus 95 ~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 174 (624)
T PRK12582 95 QALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALA 174 (624)
T ss_pred HHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999875 899999999999999998642 122222
Q ss_pred ccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhccccc--ccccCCCCCCCeEEEEecCCCCCCCceEeecc
Q 007672 165 PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN--EMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242 (594)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th 242 (594)
.... ...+ ++.++.... ......++++....... ........++++++++|||||||.||+|++||
T Consensus 175 ~~~~--~~~~-~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th 242 (624)
T PRK12582 175 ALDL--LDVT-VVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQ 242 (624)
T ss_pred hhhh--cCce-EEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeH
Confidence 1111 1222 333332211 01123455554322111 01112345789999999999999999999999
Q ss_pred HhHHHHHhhhhhhhccccCCCC---CCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC--C---hHHHHHHHhhhcC
Q 007672 243 ETIATFVSGVDLFLDQFEDKMT---VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--D---LNALRDDLMELKP 313 (594)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~--~---~~~~~~~i~~~~~ 313 (594)
+++++.+....... ... ..+++++++|++|.+++.. ++.++..|+++++.+. + ...+++.++++++
T Consensus 243 ~~l~~~~~~~~~~~-----~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~ 317 (624)
T PRK12582 243 RMMCANIAMQEQLR-----PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISP 317 (624)
T ss_pred HHHHHHHHHHHHhc-----cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCC
Confidence 99998876654333 222 2579999999999999875 4567889999988653 2 3467788899999
Q ss_pred eEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccC
Q 007672 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393 (594)
Q Consensus 314 t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~ 393 (594)
|+++++|.+++.|.+..... +.....+++ +||.+++||+
T Consensus 318 t~~~~vP~~~~~l~~~~~~~---------------------------------~~~~~~~~~--------slr~i~~gGa 356 (624)
T PRK12582 318 TVYGNVPAGYAMLAEAMEKD---------------------------------DALRRSFFK--------NLRLMAYGGA 356 (624)
T ss_pred eEEeccCHHHHHHHHHHhhC---------------------------------HHHHHHHhh--------heeEEEecCC
Confidence 99999999999886543211 111112233 8999999999
Q ss_pred CCCHHHHHHHHHhc------CCceEeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCce
Q 007672 394 PLSTEVEEFLRVTC------CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE 467 (594)
Q Consensus 394 ~l~~~~~~~~~~~~------~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 467 (594)
++++++.+.+.+.+ ++.+++.||+||++.++....... ...+++|+|++|++++|++ .|+.||
T Consensus 357 ~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~~----------~G~~GE 425 (624)
T PRK12582 357 TLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDT-ERVGLIGLPLPGVELKLAP----------VGDKYE 425 (624)
T ss_pred CCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCCC-CCCCCCCcCCCCcEEEEcc----------CCCceE
Confidence 99999999998752 368999999999987765433222 3347999999999999976 346899
Q ss_pred EEEccCCcccccCCCchhhhhcc-cCCccccCceEEE-c---CCCcEEEEeccCceeEcCCceeechHHHH--HHHhcCC
Q 007672 468 VCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI-L---PNGVVKIIDRKKNLIKISQGEYVALEYLE--NVYCVAP 540 (594)
Q Consensus 468 i~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~-~---~dG~l~~~GR~~d~i~~~~G~~v~~~~iE--~~l~~~p 540 (594)
|+|+|++++.||+++++.+.+.| .||||+|||+|++ | +||+|++.||.||+|++++|++|+|.+|| .++.+||
T Consensus 426 l~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p 505 (624)
T PRK12582 426 VRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSP 505 (624)
T ss_pred EEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCc
Confidence 99999999999999999999999 7999999999998 4 46999999999999998889999998884 6889999
Q ss_pred CccceEEeecCCc
Q 007672 541 IIEDPQVNVSCSS 553 (594)
Q Consensus 541 ~V~~~~V~g~~~~ 553 (594)
.|.||+|+|++++
T Consensus 506 ~V~~a~VvG~~~~ 518 (624)
T PRK12582 506 VIHDAVVAGQDRA 518 (624)
T ss_pred chheEEEEcCCCC
Confidence 9999999999886
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=518.09 Aligned_cols=480 Identities=21% Similarity=0.233 Sum_probs=381.9
Q ss_pred CCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 007672 36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV 115 (594)
Q Consensus 36 ~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~ 115 (594)
..|...+++.++|+++++++||++|+++. + +.+||.||.+++.++|..|.+.|+++|++|+++++|+++++
T Consensus 15 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~ 85 (542)
T PRK06155 15 PLPPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFL 85 (542)
T ss_pred cCCccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHH
Confidence 34456788999999999999999999865 4 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCc
Q 007672 116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (594)
Q Consensus 116 ~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 195 (594)
++++||+++|++++|+++.++.+++.++++++++++++++.+....+..... .....+.++.++..... .
T Consensus 86 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~ 155 (542)
T PRK06155 86 DVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADP-GDLPLPAVWLLDAPASV---------S 155 (542)
T ss_pred HHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcc-cccCcceEEEecCcccc---------c
Confidence 9999999999999999999999999999999999999999877665533221 11234455555433210 0
Q ss_pred ceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecCh
Q 007672 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (594)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 275 (594)
....|..................++++++++|||||||.||+|+++|.++..........+ ++..++++++.+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl 230 (542)
T PRK06155 156 VPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPL 230 (542)
T ss_pred cccccchhhhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCH
Confidence 0001111000000111122334678999999999999999999999999988777665555 78899999999999
Q ss_pred hHHHHHHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 276 AHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 276 ~~~~~~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
+|..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+.......
T Consensus 231 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~------------------- 291 (542)
T PRK06155 231 FHTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESD------------------- 291 (542)
T ss_pred HHHHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcccc-------------------
Confidence 999998877889999999998776 899999999999999999999999887643211100
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccc
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 434 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~ 434 (594)
.+ +++|.++.|| +++.+.+.+.+.+++++++.||+||++.++...... ..
T Consensus 292 ------------------~~--------~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~--~~ 341 (542)
T PRK06155 292 ------------------RA--------HRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHGS--QR 341 (542)
T ss_pred ------------------cc--------CceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCCC--CC
Confidence 01 2788877665 578888999888899999999999998876654322 23
Q ss_pred cCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccC---CcccccCCCchhhhhcccCCccccCceEEEcCCCcEEE
Q 007672 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI 511 (594)
Q Consensus 435 ~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~ 511 (594)
.+++|.+.++++++|+| +++.. ++.|+.|||+++|+ +++.||+++++.+...|.+|||+|||+|++++||++++
T Consensus 342 ~~~vG~~~~~~~~~i~d-~~~~~--~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i 418 (542)
T PRK06155 342 PGSMGRLAPGFEARVVD-EHDQE--LPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRF 418 (542)
T ss_pred CCCcCccCCCceEEEEC-CCCCC--CCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEE
Confidence 47899999999999999 66554 44558999999998 69999999999999889999999999999999999999
Q ss_pred EeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccc--cccccee--------ee------E
Q 007672 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRR--HQKVGIL--------EW------S 569 (594)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~--~~~~~~~--------~~------~ 569 (594)
.||.+|+|++ +|++|+|.+||++|.++|+|.+|+|++++++ .+++.. ....+.. .+ .
T Consensus 419 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~P~ 497 (542)
T PRK06155 419 VDRIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVPR 497 (542)
T ss_pred EecCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCccCCc
Confidence 9999999995 8999999999999999999999999998774 222221 1111111 11 2
Q ss_pred eeeecCceeeecccccccccccc
Q 007672 570 CWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 570 ~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.+.....||+|++||+.|+++++
T Consensus 498 ~i~~~~~iP~t~~GKi~r~~l~~ 520 (542)
T PRK06155 498 YVEFVAALPKTENGKVQKFVLRE 520 (542)
T ss_pred EEEEeccCCCCcccceeHHHHHh
Confidence 25556678999999999998875
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=516.88 Aligned_cols=475 Identities=18% Similarity=0.177 Sum_probs=375.4
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..++.++|+++++++|+++|+++. + +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++|
T Consensus 22 ~~~l~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la 92 (527)
T TIGR02275 22 DKPLTDILRDQAARYPDAIAIICG---N------RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA 92 (527)
T ss_pred CCcHHHHHHHHHHHCCCceEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 467999999999999999999864 3 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHH----HHhcccccccccccEEEEecCCcHHHHHHHhhCCcc
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (594)
|+++|++++++++..+.+++.++++.+++++++++..... ..........+..+.++.......
T Consensus 93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 160 (527)
T TIGR02275 93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV------------ 160 (527)
T ss_pred HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC------------
Confidence 9999999999999999999999999999999999865321 111111111223344444332110
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChh
Q 007672 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (594)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 276 (594)
...+...+... ..........++++++++|||||||.||+|++||.++...+......+ .+..++++++.+|++
T Consensus 161 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~ 234 (527)
T TIGR02275 161 EAELFLWLESP-AEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAA 234 (527)
T ss_pred cchhhHHhhCc-CccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChH
Confidence 00111111111 111122345678999999999999999999999999999888766655 678899999999999
Q ss_pred HHHHHHH--HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007672 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (594)
Q Consensus 277 ~~~~~~~--~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (594)
|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+......
T Consensus 235 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~------------------- 295 (527)
T TIGR02275 235 HNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR------------------- 295 (527)
T ss_pred hhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-------------------
Confidence 9998764 5667889999988665 89999999999999999999999988765332111
Q ss_pred HHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCcc
Q 007672 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~ 433 (594)
.++ +++|.+++||+++++++.+.+.+.+++++++.||+||++............
T Consensus 296 ------------------~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~ 349 (527)
T TIGR02275 296 ------------------YDL--------SSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEI 349 (527)
T ss_pred ------------------CCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCcccc
Confidence 111 289999999999999999999998899999999999965433222111122
Q ss_pred ccCccccCc-cCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEE
Q 007672 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (594)
Q Consensus 434 ~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~ 511 (594)
...++|.|+ ++.+++|+| +++.. ++.|+.|||+++|+.++.||+++++.+...| .+|||+|||+|++++||++++
T Consensus 350 ~~~~~G~~~~~~~~v~i~d-~~g~~--~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~ 426 (527)
T TIGR02275 350 IFTTQGRPMSPDDEVRVVD-DHGNP--VAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVV 426 (527)
T ss_pred ccccCCCCCCCCceEEEEC-CCCCC--CCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEE
Confidence 236889998 588999999 65543 4456899999999999999999999998888 789999999999999999999
Q ss_pred EeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc-ccee---------eeEe-----
Q 007672 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK-VGIL---------EWSC----- 570 (594)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~-~~~~---------~~~~----- 570 (594)
.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.++. ++++..... .... .+..
T Consensus 427 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~l~~~~l~~~~~P~ 505 (527)
T TIGR02275 427 VGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPALKAAQLRRFLRERGLAEYKLPD 505 (527)
T ss_pred Eecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCCCHHHHHHHHHhCCCccccCCC
Confidence 9999999995 8999999999999999999999999999875 344332211 1111 1222
Q ss_pred -eeecCceeeeccccccccccc
Q 007672 571 -WFIPGTLFTCSATKLYPLRAE 591 (594)
Q Consensus 571 -~~~p~~i~~~~~gk~~r~~~~ 591 (594)
+...+.||+|++||+.|+.+|
T Consensus 506 ~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 506 RVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred EEEEeccCCCCCccceeHHhcC
Confidence 444577999999999999875
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-60 Score=515.88 Aligned_cols=480 Identities=22% Similarity=0.257 Sum_probs=380.4
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
.++.++|.++++.+|+++|+++. +...+.++.+||.||.+++.++|.+|++.|+++|++|+++++|+++++++++||
T Consensus 22 ~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~ 98 (538)
T TIGR03208 22 RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC 98 (538)
T ss_pred CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 57999999999999999999864 333344578999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHH----HHhcccccccccccEEEEecCCcHHHHHHHhhCCcce
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 197 (594)
+++|++++|++|..+.+++.++++.++++++++++.... ..........+....++..+... .
T Consensus 99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 165 (538)
T TIGR03208 99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG-------------D 165 (538)
T ss_pred HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC-------------C
Confidence 999999999999999999999999999999999875321 11111111223344555554321 1
Q ss_pred eeHHHHHhccccc--c-----cccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEE
Q 007672 198 YSWDEFLHLGKVN--E-----MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270 (594)
Q Consensus 198 ~~~~~~~~~~~~~--~-----~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (594)
..|+.++...... . .......++++++++|||||||.||+|+++|+++...+......+ ++..+++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l 240 (538)
T TIGR03208 166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-----ELGGGDVIL 240 (538)
T ss_pred cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-----CCCCCCeEE
Confidence 1233332211100 0 111234678999999999999999999999999999888776655 678899999
Q ss_pred EecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 007672 271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348 (594)
Q Consensus 271 ~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (594)
+.+|++|..++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+.........
T Consensus 241 ~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~------------- 307 (538)
T TIGR03208 241 MASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGA------------- 307 (538)
T ss_pred EeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCC-------------
Confidence 9999999988765 6678999999988766 899999999999999999999999887653221111
Q ss_pred HHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccC
Q 007672 349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428 (594)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~ 428 (594)
++ +++|.+++||+++++++.+.+.+.+++.+++.||+||++.+.....
T Consensus 308 ------------------------~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 355 (538)
T TIGR03208 308 ------------------------PV--------PSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEP 355 (538)
T ss_pred ------------------------CC--------CcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCc
Confidence 11 2899999999999999999998888999999999999988766544
Q ss_pred CCC-ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCC
Q 007672 429 PDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 507 (594)
Q Consensus 429 ~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG 507 (594)
... .....++|+|+++++++|++ +++.. ++.|+.|||+++|++++.||+++++.+.. ..+|||+|||+|++|+||
T Consensus 356 ~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~--~~~g~~Gel~v~g~~~~~gy~~~~~~~~~-~~~~~~~TGD~~~~~~~g 431 (538)
T TIGR03208 356 DDALEKASTTDGRPLPGVEVKVID-ANGAK--LSQGETGRLLVRGCSNFGGYLKRPHLNST-DAEGWFDTGDLAFQDAEG 431 (538)
T ss_pred ccchhhccCcccccCCCCEEEEEC-CCCCC--CcCCCCcEEEEecCcccccccCCcccccc-cCCCceeccceEEECCCC
Confidence 322 12235789999999999999 65544 44568999999999999999999887642 368999999999999999
Q ss_pred cEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc--cce---------eeeEe
Q 007672 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK--VGI---------LEWSC 570 (594)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~--~~~---------~~~~~ 570 (594)
+|++.||.+|+|++ +|++|+|.+||++|.+||+|.+++|++.++. ++++..... .+. ..+..
T Consensus 432 ~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~ 510 (538)
T TIGR03208 432 YIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVAL 510 (538)
T ss_pred cEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCCHHHHHHHHHhcchhh
Confidence 99999999999995 8999999999999999999999999998764 333332211 111 11222
Q ss_pred ------eeecCceeeecccccccccccc
Q 007672 571 ------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 571 ------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+.....+|+|++||+.|+++++
T Consensus 511 ~~~P~~i~~v~~iP~t~~gKv~r~~L~~ 538 (538)
T TIGR03208 511 QYIPERLEVVDALPATPAGKIQKFRLRE 538 (538)
T ss_pred ccCCcEEEEeccCCCCCccccchHhhcC
Confidence 4444669999999999999874
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-61 Score=519.99 Aligned_cols=485 Identities=22% Similarity=0.245 Sum_probs=373.9
Q ss_pred CCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 007672 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (594)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~ 117 (594)
.+...++.++|+++++++|+++|+++. ++. +.+||+||.++++++|++|.+.|+++||+|+|+++|+++++++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~ 84 (534)
T PRK05852 12 SDFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVA 84 (534)
T ss_pred hhhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHH
Confidence 356678999999999999999999875 332 4799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcce
Q 007672 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (594)
Q Consensus 118 ~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 197 (594)
++||+++|++++++++.++.+++.++++.++++++|++............ ......+.+...... ......
T Consensus 85 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~ 155 (534)
T PRK05852 85 LLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGP------SGGTLS 155 (534)
T ss_pred HHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeecccccc------cccccc
Confidence 99999999999999999999999999999999999998653322111000 011111122111000 000000
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhH
Q 007672 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (594)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 277 (594)
..+...... ...........++.++++|||||||.||+|+++|.++...+......+ .+..+|++++.+|++|
T Consensus 156 ~~~~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~ 228 (534)
T PRK05852 156 VHLDAATEP--TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLYH 228 (534)
T ss_pred cccccccCC--CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcch
Confidence 000000000 000111122356889999999999999999999999999888877766 7889999999999999
Q ss_pred HHHHHH-HHHhhhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007672 278 ILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (594)
Q Consensus 278 ~~~~~~-~l~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (594)
.+++.. ++.++..|+++++... ++..+++.|+++++|+++++|.++..|.+.......
T Consensus 229 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------ 290 (534)
T PRK05852 229 GHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPS------------------ 290 (534)
T ss_pred hHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccc------------------
Confidence 999876 6667888998887542 788999999999999999999999998753221100
Q ss_pred HHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC--
Q 007672 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-- 431 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-- 431 (594)
..++ +++|.++++|+++++++.+.+.+.++..+++.||+||++..++......
T Consensus 291 -----------------~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~ 345 (534)
T PRK05852 291 -----------------GRKP--------AALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIG 345 (534)
T ss_pred -----------------cccC--------CCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccc
Confidence 0001 3899999999999999999999989999999999999988665433211
Q ss_pred --ccccCccccC--ccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCC
Q 007672 432 --MCMVGTAGPV--SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 507 (594)
Q Consensus 432 --~~~~~~~G~~--~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG 507 (594)
.....+.|.+ .++++++|+| +++..+ +.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++|+||
T Consensus 346 ~~~~~~~~~g~~g~~~g~~~~i~d-~~g~~~--~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG 422 (534)
T PRK05852 346 QTENPVVSTGLVGRSTGAQIRIVG-SDGLPL--PAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAG 422 (534)
T ss_pred cccCcccccccCCCCCCCeEEEEC-CCCCCC--CCCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeCCC
Confidence 1111234444 7999999999 666544 45689999999999999999999999999999999999999999999
Q ss_pred cEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc--ccee--------eeEe-
Q 007672 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK--VGIL--------EWSC- 570 (594)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~--~~~~--------~~~~- 570 (594)
++++.||.+|+|+. +|.+|+|.+||++|.++|+|.+|+|+|++++ ++++..... .... .++.
T Consensus 423 ~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~~~~i~~~~~~~l~~~ 501 (534)
T PRK05852 423 DLSIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQFCRERLAAF 501 (534)
T ss_pred cEEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCCHHHHHHHHHHhcccc
Confidence 99999999999995 8999999999999999999999999998774 333332111 1111 1222
Q ss_pred -----eeecCceeeecccccccccccc
Q 007672 571 -----WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 571 -----~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+.....||+|++||+.|+.+++
T Consensus 502 ~~P~~i~~v~~iP~t~~GKi~r~~L~~ 528 (534)
T PRK05852 502 EIPASFQEASGLPHTAKGSLDRRAVAE 528 (534)
T ss_pred cCCeEEEEhhhcCCCCCccccHHHHHH
Confidence 5556679999999999998875
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-61 Score=527.84 Aligned_cols=487 Identities=17% Similarity=0.146 Sum_probs=363.8
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
.|+.+.+.. +.++++|+++. + .++..+++||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||
T Consensus 87 ~n~~~~~~~---~~~~~~a~~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~ 159 (652)
T TIGR01217 87 LNYAENLLR---AAGTEPALLYV---D-ETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLAT 159 (652)
T ss_pred eeHHHHHhc---cCCCCeEEEEE---C-CCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 345444443 25789999886 4 3455689999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH---------HHHhcccccccccccEEEEecCCcHHHHHHHhh
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ 192 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 192 (594)
+++|++++|+++.++.+++.+++++++++++|+++... ..+..+ ....+.++.++.+......... ..
T Consensus 160 ~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~--~~ 236 (652)
T TIGR01217 160 ASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEV-RKELPTLRAVVHIPYLGPRETE--AP 236 (652)
T ss_pred HHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHH-HhcCCCccEEEEEeCCCCcccc--cc
Confidence 99999999999999999999999999999999987531 222111 1223445556555422100000 00
Q ss_pred CCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHH-HhhhhhhhccccCCCCCCcEEEE
Q 007672 193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVDDVYLS 271 (594)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 271 (594)
.......|+++................+++++++|||||||.||||+++|.+++.. .......+ ++.++|++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~ 311 (652)
T TIGR01217 237 KIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGPGDRLFY 311 (652)
T ss_pred cccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCCCcEEEE
Confidence 00123457776654212122223456789999999999999999999999987543 33333333 6788999999
Q ss_pred ecChhHHHHHHHHHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007672 272 FLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (594)
Q Consensus 272 ~~pl~~~~~~~~~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (594)
..|+.|..+ ..++.++..|++++++++ ++..+++.++++++|++..+|.+++.+.+...
T Consensus 312 ~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~--------------- 375 (652)
T TIGR01217 312 YTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGV--------------- 375 (652)
T ss_pred eCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCC---------------
Confidence 999999754 234578999999999753 67899999999999999888877766532100
Q ss_pred HHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC--CceEeeecccCCCCce
Q 007672 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGPT 424 (594)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~--~~i~~~yG~tE~~~~~ 424 (594)
. .....+++ +||.+++||+++++++.+++.+.++ +.+.+.||+||+++..
T Consensus 376 -------------------~-~~~~~~l~--------sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~ 427 (652)
T TIGR01217 376 -------------------H-PARTHDLS--------ALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCF 427 (652)
T ss_pred -------------------C-ccccCChh--------heeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccc
Confidence 0 01122344 8999999999999999999988775 4577899999975433
Q ss_pred eccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccC--CcccccCCCchhhh--hc-c--cCCcccc
Q 007672 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ES-I--IDGWFHT 497 (594)
Q Consensus 425 ~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~--~v~~gY~~~~~~~~--~~-~--~~g~~~T 497 (594)
....+......+++|.|.+|++++|+| +++..+ .|+.|||+++|| +++.|||++++.++ +. | .+|||+|
T Consensus 428 ~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~---~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~t 503 (652)
T TIGR01217 428 AGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV---TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRH 503 (652)
T ss_pred cCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC---CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEc
Confidence 322222223347899999999999999 666654 368999999996 68999999998654 22 2 2689999
Q ss_pred CceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccce------
Q 007672 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGI------ 565 (594)
Q Consensus 498 GDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~------ 565 (594)
||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.||+|+|++++ +++++.......
T Consensus 504 GDlg~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~ 582 (652)
T TIGR01217 504 GDWITLTPRGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLD 582 (652)
T ss_pred CCcEEECCCCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHH
Confidence 999999999999999999999995 8999999999999999999999999999875 344433221111
Q ss_pred -------eeeEee------eecCceeeecccccccccccc
Q 007672 566 -------LEWSCW------FIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 566 -------~~~~~~------~~p~~i~~~~~gk~~r~~~~~ 592 (594)
..+..| .....||+|++||++|+.+|+
T Consensus 583 ~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~ 622 (652)
T TIGR01217 583 RIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKR 622 (652)
T ss_pred HHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHH
Confidence 112233 344569999999999999875
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=512.43 Aligned_cols=464 Identities=22% Similarity=0.248 Sum_probs=376.1
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..+.+.|.++|+.+||++|+++. + +.+||.||.++++++|+.|++ .|+++|++|+++++|+++++++++|
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la 72 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA 72 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 45889999999999999999864 2 689999999999999999985 6999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|+++..+.+++..+++.++++.++++......+.... .. .....++.+.+ +
T Consensus 73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~-~~-~~~~~~~~~~~------------------~ 132 (496)
T PRK06839 73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQ-KV-SYVQRVISITS------------------L 132 (496)
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhh-hc-cCcceEEEecc------------------h
Confidence 9999999999999999999999999999999999877654432211 11 11223333322 2
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
+++.... .........+++++++|||||||.||+|.++|.++..........+ ++..++++++.+|++|..+
T Consensus 133 ~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 204 (496)
T PRK06839 133 KEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIGG 204 (496)
T ss_pred HhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchhh
Confidence 2222111 1122334568999999999999999999999999987665544444 6788999999999999998
Q ss_pred HHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007672 281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (594)
Q Consensus 281 ~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (594)
+.. .+.++..|+++++.+. ++..+++.++++++|++.++|.+++.+.......
T Consensus 205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 259 (496)
T PRK06839 205 IGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE------------------------- 259 (496)
T ss_pred HHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc-------------------------
Confidence 875 5667899999988766 9999999999999999999999999987532111
Q ss_pred ccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCC-CccccCc
Q 007672 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGT 437 (594)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~ 437 (594)
..++ +++|.+++||+++++++.+.+.+. |+++.+.||+||++......... .....++
T Consensus 260 ------------~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~ 318 (496)
T PRK06839 260 ------------TTNL--------QSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGS 318 (496)
T ss_pred ------------cCCC--------cccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCC
Confidence 0112 289999999999999999999886 99999999999999765544332 2233478
Q ss_pred cccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCc
Q 007672 438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517 (594)
Q Consensus 438 ~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d 517 (594)
+|.|+++++++|+| +++.. ++.|+.|||+|+|+.++.||+++++.+...+.+|||+|||+|++|+||++++.||.+|
T Consensus 319 ~G~p~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d 395 (496)
T PRK06839 319 IGKPVLFCDYELID-ENKNK--VEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKE 395 (496)
T ss_pred CcccCCCceEEEEC-CCcCC--CCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCcEEEeccccc
Confidence 99999999999999 66665 4556899999999999999999999999888999999999999999999999999999
Q ss_pred eeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc--cceeee--------------EeeeecC
Q 007672 518 LIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK--VGILEW--------------SCWFIPG 575 (594)
Q Consensus 518 ~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~--~~~~~~--------------~~~~~p~ 575 (594)
+|+. +|++|+|.+||++|.++|+|.||+|++++++ ++++..... ....++ ..+....
T Consensus 396 ~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~ 474 (496)
T PRK06839 396 MIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFLK 474 (496)
T ss_pred eEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCcEEEEec
Confidence 9995 8999999999999999999999999998875 233332211 111111 2366667
Q ss_pred ceeeecccccccccccc
Q 007672 576 TLFTCSATKLYPLRAEE 592 (594)
Q Consensus 576 ~i~~~~~gk~~r~~~~~ 592 (594)
.+|+|++||+.|.++++
T Consensus 475 ~~P~t~~GKi~r~~l~~ 491 (496)
T PRK06839 475 ELPKNATGKIQKAQLVN 491 (496)
T ss_pred cCCCCccccccHHHHHH
Confidence 89999999999998875
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-60 Score=507.56 Aligned_cols=457 Identities=18% Similarity=0.200 Sum_probs=371.3
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
+++.+.|.++++++||++|+++. + .++||.||.++++++|+.|.+.|. +|++|+|+++|+++++++++||
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~ 70 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA 70 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence 46889999999999999999865 3 479999999999999999999884 8999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (594)
+++|++++|+++.++++++.++++.+++++++++......+... . ..++..+. +.
T Consensus 71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~-~~~~~~~~------------------~~ 125 (487)
T PRK07638 71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------E-GRVIEIDE------------------WK 125 (487)
T ss_pred HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------c-ceEEEehh------------------hh
Confidence 99999999999999999999999999999999998654333110 0 12222221 11
Q ss_pred HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHH
Q 007672 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281 (594)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 281 (594)
+....... .........+++++++|||||||.||+|+++|++++..+......+ ++..+|+++...|++|..++
T Consensus 126 ~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l 199 (487)
T PRK07638 126 RMIEKYLP-TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFL 199 (487)
T ss_pred hhhhhccc-cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHH
Confidence 11111101 1111122356789999999999999999999999999888766655 68889999999999999887
Q ss_pred HHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc
Q 007672 282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360 (594)
Q Consensus 282 ~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (594)
...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+...
T Consensus 200 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------- 250 (487)
T PRK07638 200 YGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR----------------------------- 250 (487)
T ss_pred HHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC-----------------------------
Confidence 777888999999998876 89999999999999999999999998865300
Q ss_pred CCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCCccccCccc
Q 007672 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG 439 (594)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G 439 (594)
...+.+.++++|+.++.++.+.+.+.+ ++.+++.||+||++.++............++|
T Consensus 251 --------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G 310 (487)
T PRK07638 251 --------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVG 310 (487)
T ss_pred --------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCC
Confidence 001556678899999999999998888 78999999999999876665543333447899
Q ss_pred cCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCcee
Q 007672 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI 519 (594)
Q Consensus 440 ~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i 519 (594)
.|+++++++|+| +++.. ++.|+.|||+|+|+.++.||+++++.+.+.+.+|||+|||+|++|+||++++.||.+|+|
T Consensus 311 ~~~~~~~~~i~d-~~g~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i 387 (487)
T PRK07638 311 RPFHNVQVRICN-EAGEE--VQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI 387 (487)
T ss_pred cccCCcEEEEEC-CCCCC--CCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeE
Confidence 999999999999 66554 456689999999999999999999888777789999999999999999999999999999
Q ss_pred EcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc-cce-----eee------EeeeecCceeeec
Q 007672 520 KISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK-VGI-----LEW------SCWFIPGTLFTCS 581 (594)
Q Consensus 520 ~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~-~~~-----~~~------~~~~~p~~i~~~~ 581 (594)
++ +|++|+|.+||++|.++|+|.+|+|++.+++ ++++..... -.+ ..+ ..+.....||+|+
T Consensus 388 ~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~ 466 (487)
T PRK07638 388 LF-GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSATKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTN 466 (487)
T ss_pred Ee-CCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCCCHHHHHHHHHHHhhcccCCcEEEEecccCCCC
Confidence 96 8999999999999999999999999998875 222321100 000 011 2245557899999
Q ss_pred ccccccccccc
Q 007672 582 ATKLYPLRAEE 592 (594)
Q Consensus 582 ~gk~~r~~~~~ 592 (594)
+||+.|+++++
T Consensus 467 ~GKv~r~~L~~ 477 (487)
T PRK07638 467 SGKIARMEAKS 477 (487)
T ss_pred cccccHHHHHH
Confidence 99999998864
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-60 Score=518.06 Aligned_cols=482 Identities=21% Similarity=0.267 Sum_probs=362.9
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
.|+.++|.++++.+||++|+++. + .++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~ 84 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV 84 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 56899999999999999999875 3 47999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccc-----cccEEEEecCCcHHHHHHHhhCCcc
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-----RLRVMVCFTSLTAEQKEMAVQTGIK 196 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (594)
+++|++++|+++..+.+++.++++.++++++|++.+....+..... ... ....++.++...... .....
T Consensus 85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 158 (579)
T PLN03102 85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLH-LLSSEDSNLNLPVIFIHEIDFPK-----RPSSE 158 (579)
T ss_pred HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHh-hccccccccCceEEEeccccccc-----CCccc
Confidence 9999999999999999999999999999999998776554432211 101 011233333221100 00011
Q ss_pred eeeHHHHHhcccccccc----cCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEe
Q 007672 197 PYSWDEFLHLGKVNEME----ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272 (594)
Q Consensus 197 ~~~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (594)
..++.++.......... .....++++++++|||||||.||+|+++|+++........... .+...+++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~ 233 (579)
T PLN03102 159 ELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-----EMGTCPVYLWT 233 (579)
T ss_pred ccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-----CCCCCCeEEec
Confidence 23455555433221111 1123578999999999999999999999999755443322221 45667889999
Q ss_pred cChhHHHHHHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007672 273 LPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (594)
Q Consensus 273 ~pl~~~~~~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (594)
+|++|..++...+.++..|+++++... ++..+++.|+++++|++.++|+++..|.+.......
T Consensus 234 ~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------- 297 (579)
T PLN03102 234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLS---------------- 297 (579)
T ss_pred CChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccC----------------
Confidence 999999988777777888888887765 888999999999999999999999998753211000
Q ss_pred HHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCC-
Q 007672 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD- 430 (594)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~- 430 (594)
.+ .+++.+++||+++++.+.+.+.+ +|+.+++.||+||+++........
T Consensus 298 ---------------------~~--------~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~ 347 (579)
T PLN03102 298 ---------------------PR--------SGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQD 347 (579)
T ss_pred ---------------------Cc--------ccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCcccccccccc
Confidence 00 15778999999999999998876 599999999999998654322110
Q ss_pred -------C-----ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccC
Q 007672 431 -------E-----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498 (594)
Q Consensus 431 -------~-----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TG 498 (594)
. ....+..+.++++ +++++.+.+..++.+.++.|||+++|++++.||+++++.+.+.|.+|||+||
T Consensus 348 ~~~~~~~~~~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TG 425 (579)
T PLN03102 348 EWNRLPENQQMELKARQGVSILGLAD--VDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTG 425 (579)
T ss_pred ccccCCcccccccccCCCcccccccc--eEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceecC
Confidence 0 0011333344444 4455523333344433468999999999999999999999999999999999
Q ss_pred ceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc--------
Q 007672 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG-------- 564 (594)
Q Consensus 499 Dlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~-------- 564 (594)
|+|++|+||+|++.||.+|+|+. +|++|+|.+||++|.+||.|.+|+|++++++ ++++.......
T Consensus 426 Dlg~~d~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~ 504 (579)
T PLN03102 426 DVGVIHPDGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDK 504 (579)
T ss_pred ceEEEcCCCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCccccccccccc
Confidence 99999999999999999999996 8999999999999999999999999999885 33333221100
Q ss_pred ----e--------eeeEe------eeecCceeeecccccccccccc
Q 007672 565 ----I--------LEWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 565 ----~--------~~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
. ..++. +...+.+|+|++||+.|+++++
T Consensus 505 ~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~ 550 (579)
T PLN03102 505 LVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRD 550 (579)
T ss_pred ccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHHHH
Confidence 0 11222 4555678999999999998875
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-60 Score=513.77 Aligned_cols=484 Identities=20% Similarity=0.293 Sum_probs=379.1
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
.++.++|+.+++++|+++++.+. ..++++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~ 84 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRR-----VEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGV 84 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEee-----ccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 57899999999999998887643 2234578999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (594)
+++|++++|++|..+++++..+++.+++++++++......+.+. .........++...+.... ........+|+
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 158 (539)
T PRK07008 85 SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDAL-APQCPNVKGWVAMTDAAHL-----PAGSTPLLCYE 158 (539)
T ss_pred HhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHH-HhhCCCceEEEEEccCCcc-----ccCCcccccHH
Confidence 99999999999999999999999999999999998765443221 1122334444444332110 00112345666
Q ss_pred HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHh--hhhhhhccccCCCCCCcEEEEecChhHHH
Q 007672 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (594)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 279 (594)
++...... ........++++++++|||||||.||+|++||.+++.... .+...+ ++..+|++++..|++|..
T Consensus 159 ~l~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~ 232 (539)
T PRK07008 159 TLVGAQDG-DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFHVN 232 (539)
T ss_pred HHhcccCC-CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHHhh
Confidence 66543322 1122345678899999999999999999999999875432 222233 677899999999999988
Q ss_pred HHHHHHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 007672 280 DRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (594)
Q Consensus 280 ~~~~~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (594)
++...+.++..|+++++.+. ++..+++.++++++|++.++|.++..+++......
T Consensus 233 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------- 289 (539)
T PRK07008 233 AWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG----------------------- 289 (539)
T ss_pred hHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC-----------------------
Confidence 87767778899999998754 89999999999999999999999998875322110
Q ss_pred hccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC------
Q 007672 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE------ 431 (594)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~------ 431 (594)
.++ +++|.++++|+++++++.+.+.+.+++.+++.||+||++..+.......
T Consensus 290 --------------~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~ 347 (539)
T PRK07008 290 --------------LRF--------STLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLP 347 (539)
T ss_pred --------------CCc--------ccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCC
Confidence 112 2899999999999999999998888999999999999987654432110
Q ss_pred ----ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCC
Q 007672 432 ----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 507 (594)
Q Consensus 432 ----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG 507 (594)
.....++|.|+|+++++|+| +++..++.+.++.|||+++|+.++.||+++++ ..+.+|||+|||+|++|+||
T Consensus 348 ~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~dg 423 (539)
T PRK07008 348 LDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADG 423 (539)
T ss_pred chhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCceEEEcCCC
Confidence 11236789999999999999 66766665555689999999999999999983 34568999999999999999
Q ss_pred cEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc--ccee--------eeEe-
Q 007672 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK--VGIL--------EWSC- 570 (594)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~--~~~~--------~~~~- 570 (594)
++++.||.+|+|+. +|++|+|.+||++|.++|.|.+++|+++++. ++++..... +... .+..
T Consensus 424 ~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~ 502 (539)
T PRK07008 424 FMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREELLAFYEGKVAKW 502 (539)
T ss_pred cEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccCHHHHHHHHHhhcccc
Confidence 99999999999995 8999999999999999999999999998874 233322211 1111 1222
Q ss_pred -----eeecCceeeecccccccccccc
Q 007672 571 -----WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 571 -----~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+...+.+|+|++||+.|+++++
T Consensus 503 ~~P~~i~~v~~lP~t~sgKi~r~~l~~ 529 (539)
T PRK07008 503 WIPDDVVFVDAIPHTATGKLQKLKLRE 529 (539)
T ss_pred cCCeEEEEecCCCCCCccceeHHHHHH
Confidence 4455689999999999998864
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-60 Score=516.01 Aligned_cols=492 Identities=21% Similarity=0.280 Sum_probs=385.2
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
...|+.++|++++..+|+++|+++. +. .++.+||.||.+++.++|++|.+ .|+++||+|+++++|++++++++
T Consensus 8 ~~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~ 81 (576)
T PRK05620 8 VPLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVL 81 (576)
T ss_pred CCCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence 3468999999999999999999874 32 24789999999999999999996 79999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+||+++|+++++++|..+.+++.++++.++++++|++......+.... ......+.++..+..................
T Consensus 82 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 160 (576)
T PRK05620 82 FAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEIL-KECPCVRAVVFIGPSDADSAAAHMPEGIKVY 160 (576)
T ss_pred HHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHH-hhCccccEEEEecCcccccchhccccccccc
Confidence 999999999999999999999999999999999999987665543322 2234455555554332211111111223345
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhh--hhhccccCCCCCCcEEEEecChh
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD--LFLDQFEDKMTVDDVYLSFLPLA 276 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pl~ 276 (594)
+|+++.+.... ........++++++++|||||||.||+|+++|+++........ ..+ .+..++++++.+|++
T Consensus 161 ~~~~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~ 234 (576)
T PRK05620 161 SYEALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-----AVTHGESFLCCVPIY 234 (576)
T ss_pred cHHHHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-----CCCCCCeEEEeCChH
Confidence 67887764321 2222345678999999999999999999999999865544321 122 578899999999999
Q ss_pred HHHHHHHHHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 277 HILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 277 ~~~~~~~~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
|.+++...+.++..|+++++... ++..+++.|+++++|+++++|.++..++........
T Consensus 235 h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------- 295 (576)
T PRK05620 235 HVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPP------------------- 295 (576)
T ss_pred HhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCc-------------------
Confidence 99998877888999999988754 899999999999999999999999887653211100
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC---
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--- 431 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~--- 431 (594)
+. .++|.+++||+.+++++.+.+.+.+++++++.||+||++..+....+..
T Consensus 296 ------------------~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~ 349 (576)
T PRK05620 296 ------------------ER--------MSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVS 349 (576)
T ss_pred ------------------cc--------CceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCccc
Confidence 00 2799999999999999999998888999999999999998765543321
Q ss_pred ----ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhh----------------hhcc-
Q 007672 432 ----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT----------------RESI- 490 (594)
Q Consensus 432 ----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~----------------~~~~- 490 (594)
.....++|++.+++++++++ + +...+...+..|||+++|+.++.||+++++.+ ...+
T Consensus 350 ~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~ 427 (576)
T PRK05620 350 GEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFT 427 (576)
T ss_pred cccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccc
Confidence 11124789999999999999 4 54444444578999999999999999999877 2334
Q ss_pred cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--c
Q 007672 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--K 562 (594)
Q Consensus 491 ~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~ 562 (594)
.+|||+|||+|++++||++++.||.+|+|+. +|++|+|.+||++|.+||.|.+|+|++.+++ ++++.... .
T Consensus 428 ~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~ 506 (576)
T PRK05620 428 ADGWLRTGDVGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIE 506 (576)
T ss_pred cCCcEecCceEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCC
Confidence 5789999999999999999999999999995 8999999999999999999999999998874 22322211 1
Q ss_pred c---cee--------eeEe------eeecCceeeecccccccccccc
Q 007672 563 V---GIL--------EWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 563 ~---~~~--------~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
. ... .+.. |...+.+|+|.+||++|+++++
T Consensus 507 ~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~~ 553 (576)
T PRK05620 507 PTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQ 553 (576)
T ss_pred cccccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCcHHHHHH
Confidence 1 001 1233 4444679999999999998874
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-60 Score=510.64 Aligned_cols=484 Identities=27% Similarity=0.353 Sum_probs=399.8
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
...++.++|.++++.+|+++|+.+. + +.+||+||++++.++|+.|.+.|+++|++|+++++|+.+++++++
T Consensus 4 ~~~~l~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~l 74 (521)
T PRK06187 4 YPLTIGRILRHGARKHPDKEAVYFD---G------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYF 74 (521)
T ss_pred ccCCHHHHHHHHHHHCCCceEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999876 4 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceee
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (594)
||+++|++++|+++..+.+++..+++.+++++++++......+.+. ....+.++.++..++.... ........
T Consensus 75 a~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 147 (521)
T PRK06187 75 AVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAI-LPQLPTVRTVIVEGDGPAA------PLAPEVGE 147 (521)
T ss_pred HHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHH-hhccCCccEEEEecCcccc------cccccccc
Confidence 9999999999999999999999999999999999998766654332 2233445566666544211 11123445
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHH
Q 007672 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (594)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 279 (594)
+.++...... .........+++++++|||||||.||+|.+||.++..........+ ++..++++++.+|++|.+
T Consensus 148 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~ 221 (521)
T PRK06187 148 YEELLAAASD-TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVH 221 (521)
T ss_pred HHHHhhcCCc-cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHHh
Confidence 6666554322 2223345678999999999999999999999999998888776665 788999999999999999
Q ss_pred HHHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007672 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (594)
Q Consensus 280 ~~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (594)
++...+.++..|+++++++. ++..+++.++++++|.++++|++++.|.+.....
T Consensus 222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~------------------------- 276 (521)
T PRK06187 222 AWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY------------------------- 276 (521)
T ss_pred hHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-------------------------
Confidence 98877779999999998877 8999999999999999999999999987543211
Q ss_pred ccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCc-----c
Q 007672 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-----C 433 (594)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~-----~ 433 (594)
..++ +++|.+++||++++.++.+.+.+.+++++++.||+||++++......... .
T Consensus 277 ------------~~~~--------~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~ 336 (521)
T PRK06187 277 ------------FVDF--------SSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWT 336 (521)
T ss_pred ------------ccCc--------chhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccc
Confidence 1112 28999999999999999999999889999999999999887666544333 2
Q ss_pred ccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEe
Q 007672 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513 (594)
Q Consensus 434 ~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~G 513 (594)
...++|.|++++.++|+| +++..++.+.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++++||++++.|
T Consensus 337 ~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~G 415 (521)
T PRK06187 337 KRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITD 415 (521)
T ss_pred cCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEee
Confidence 447999999999999999 7776665544789999999999999999999999999989999999999999999999999
Q ss_pred ccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--cccee--------ee------Eee
Q 007672 514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--KVGIL--------EW------SCW 571 (594)
Q Consensus 514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~~~~~--------~~------~~~ 571 (594)
|.+|+|++ +|.+++|.+||++|.++++|.+++|++.+++ +++++.+. ..+.. .+ ..+
T Consensus 416 R~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i 494 (521)
T PRK06187 416 RIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPKRI 494 (521)
T ss_pred cccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHhccCCCCceEE
Confidence 99999996 8999999999999999999999999987653 33333221 11110 11 335
Q ss_pred eecCceeeecccccccccccc
Q 007672 572 FIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 572 ~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.....||+|++||++|..+++
T Consensus 495 ~~v~~~P~t~~gK~~r~~l~~ 515 (521)
T PRK06187 495 AFVDELPRTSVGKILKRVLRE 515 (521)
T ss_pred EEccCCCCCCCCCeeHHHHHH
Confidence 566789999999999998875
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=530.40 Aligned_cols=452 Identities=21% Similarity=0.201 Sum_probs=362.0
Q ss_pred CcHHHHHHHHHHc--CCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 42 NTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 42 ~tl~~~l~~~a~~--~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
.|+.++|.++++. +||++|++.. ..+||.||.++++++|++|.+.|+++|++|+|+++|+++++++++
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 73 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL 73 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3688999988886 7999999743 259999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceee
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (594)
||+++|++++|++|.++.+++.+++++++++++|++......+... .++ .
T Consensus 74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~ 123 (705)
T PRK06060 74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E 123 (705)
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence 9999999999999999999999999999999999987654332110 000 0
Q ss_pred HHHHHhccc-ccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhh-hhhccccCCCCCCcEEEEecChhH
Q 007672 200 WDEFLHLGK-VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD-LFLDQFEDKMTVDDVYLSFLPLAH 277 (594)
Q Consensus 200 ~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pl~~ 277 (594)
+..++.... ..+....+..++++++++|||||||.||+|+++|+++.+.+..+. ..+ .+...+++++..|++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~ 198 (705)
T PRK06060 124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYF 198 (705)
T ss_pred hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchh
Confidence 001111000 011112234578999999999999999999999999988776543 233 6788899999999999
Q ss_pred HHHHHH-HHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 278 ILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 278 ~~~~~~-~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
.+++.. ++.++..|+++++.+. ++..++..++++++|+++++|+++..+++....
T Consensus 199 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~---------------------- 256 (705)
T PRK06060 199 AYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP---------------------- 256 (705)
T ss_pred hcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------
Confidence 888754 6678999999998764 788899999999999999999999888642110
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCCcc
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC 433 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~ 433 (594)
.++ ++||.+++||+++++++.+.+.+.+ ++.+++.||+||++.++........
T Consensus 257 -----------------~~~--------~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~- 310 (705)
T PRK06060 257 -----------------DSF--------RSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEW- 310 (705)
T ss_pred -----------------ccc--------cceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCCC-
Confidence 011 2899999999999999999998888 5899999999999876544332222
Q ss_pred ccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEe
Q 007672 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513 (594)
Q Consensus 434 ~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~G 513 (594)
..+++|+|+++++++|+| +++.. ++.|+.|||+|+|++++.||+++++.+.. .+|||+|||+|++++||+|++.|
T Consensus 311 ~~~~iG~p~~~~~v~i~d-~~g~~--~~~g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~l~~~G 385 (705)
T PRK06060 311 RLGTLGRVLPPYEIRVVA-PDGTT--AGPGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVTYRC 385 (705)
T ss_pred CcCcccccCCCcEEEEEC-CCCCC--CCCCCceEEEEccchhhhhhhCCCccccc--CCCcEECCeeEEECCCceEEEec
Confidence 237899999999999999 65544 45568999999999999999999876432 57999999999999999999999
Q ss_pred ccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc--cce-----------eeeEee---
Q 007672 514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK--VGI-----------LEWSCW--- 571 (594)
Q Consensus 514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~--~~~-----------~~~~~~--- 571 (594)
|.||+||+ +|++|+|.+||++|.+||.|.+|+|++++++ ++++..... .+. ..++.|
T Consensus 386 R~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P 464 (705)
T PRK06060 386 RADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVP 464 (705)
T ss_pred ccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCC
Confidence 99999997 7999999999999999999999999998764 333332211 110 122334
Q ss_pred ---eecCceeeecccccccccccc
Q 007672 572 ---FIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 572 ---~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.....||+|++||+.|+.+++
T Consensus 465 ~~i~~v~~iP~t~~GKidr~~L~~ 488 (705)
T PRK06060 465 HRFAVVDRLPRTPNGKLVRGALRK 488 (705)
T ss_pred cEEEEeecCCCCcchhhHHHHHHh
Confidence 444578999999999999875
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-60 Score=521.79 Aligned_cols=490 Identities=18% Similarity=0.140 Sum_probs=365.9
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCC--CCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGK--FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~--~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
|....+|.++++++|+++|+++. ++. +++++++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++
T Consensus 175 n~~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~L 251 (728)
T PLN03052 175 NVAECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYL 251 (728)
T ss_pred EHHHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 33455677766778999999987 432 3456899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHH-----HhcccccccccccEEEEecCCcHHHHHHHhhCC
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE-----LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 194 (594)
||+++|++++|++|.++++++.+++++++++++|+++..... ....+..... ..++++....... .....
T Consensus 252 A~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~---~~~~~ 326 (728)
T PLN03052 252 AIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSV---RVKLR 326 (728)
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCcc---ccccc
Confidence 999999999999999999999999999999999998753210 0000000001 1233332211000 00000
Q ss_pred cceeeHHHHHhccccc----ccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEE
Q 007672 195 IKPYSWDEFLHLGKVN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270 (594)
Q Consensus 195 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (594)
....+|++++...... ........++++++|+|||||||.||||+++|.+++..+......+ ++.++|+++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~l~~~d~~~ 401 (728)
T PLN03052 327 EGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----DIRKGDIVC 401 (728)
T ss_pred cCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----CCCCCcEEE
Confidence 1234677776542111 1111223568999999999999999999999999877655544434 678899999
Q ss_pred EecChhHHHHHHHHHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 007672 271 SFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348 (594)
Q Consensus 271 ~~~pl~~~~~~~~~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (594)
+..|+.|.++...++.+|..|+++++.++ ++..+++.++++++|++.++|++++.|.+..
T Consensus 402 ~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~------------------ 463 (728)
T PLN03052 402 WPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTN------------------ 463 (728)
T ss_pred ECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcC------------------
Confidence 99999999998777789999999999875 5678999999999999999999999875421
Q ss_pred HHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC-CceEeeecccCCCCceecc
Q 007672 349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVC 427 (594)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~-~~i~~~yG~tE~~~~~~~~ 427 (594)
..+..+++ +||.++++|++++++...++.+.++ .++.+.||+||+++.....
T Consensus 464 -------------------~~~~~dls--------sLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~ 516 (728)
T PLN03052 464 -------------------CMAGLDWS--------SIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTG 516 (728)
T ss_pred -------------------CcccCChh--------heeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccC
Confidence 01223444 8999999999999999888877665 5799999999998654433
Q ss_pred CCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCC--cccccCCCchhhhhccc-----CC--ccccC
Q 007672 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT--LFSGYYKNPDLTRESII-----DG--WFHTG 498 (594)
Q Consensus 428 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~--v~~gY~~~~~~~~~~~~-----~g--~~~TG 498 (594)
.+......+++|.|.+|++++|+| +++..++.|....|||+++++. ...+|+++.. ...-|. +| ||+||
T Consensus 517 ~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g~~~~~tG 594 (728)
T PLN03052 517 SLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNGKILRRHG 594 (728)
T ss_pred CCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCCCEEEecC
Confidence 322223347899999999999999 7776665442246999998642 3356666542 222221 23 89999
Q ss_pred ceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHh-cCCCccceEEeecCCc-------hhhcccc----ccccee
Q 007672 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC-VAPIIEDPQVNVSCSS-------CAMRRRH----QKVGIL 566 (594)
Q Consensus 499 Dlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~-~~p~V~~~~V~g~~~~-------~~~~~~~----~~~~~~ 566 (594)
|+|++|+||+++++||.||+||+ +|++|+|.|||++|. .||.|.||+|+|++++ +++++.+ ...+..
T Consensus 595 Dl~~~d~dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~ 673 (728)
T PLN03052 595 DIFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLN 673 (728)
T ss_pred ceEEECCCCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHH
Confidence 99999999999999999999996 899999999999995 8999999999998764 3344322 111111
Q ss_pred ee------------------EeeeecCceeeecccccccccccc
Q 007672 567 EW------------------SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 567 ~~------------------~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
++ ..+.....||+|.+||++|+.+|+
T Consensus 674 ~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~ 717 (728)
T PLN03052 674 ELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQ 717 (728)
T ss_pred HHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHHHH
Confidence 11 235566679999999999999875
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-60 Score=511.71 Aligned_cols=479 Identities=24% Similarity=0.297 Sum_probs=378.9
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
...+++.++|...++++|+++|+++. + +.+||.||.+++.++|..|.+.|+++|++|+++++|++++++++
T Consensus 4 ~~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~ 74 (528)
T PRK07470 4 RRVMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESM 74 (528)
T ss_pred ccCCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHH
Confidence 34578999999999999999999864 3 47999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+||+++|++++++++..+.+++.++++.++++.++++......... ..........++.++.... ..
T Consensus 75 lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------~~ 141 (528)
T PRK07470 75 FAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAA-VRAASPDLTHVVAIGGARA------------GL 141 (528)
T ss_pred HHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHH-HHhhCCcCceEEEeCCCcc------------cc
Confidence 9999999999999999999999999999999999999875443321 1111223344444443211 23
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
+++++...............++++++++|||||||.||+|+++|.++...+....... ..+....|+++..+|++|.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~ 218 (528)
T PRK07470 142 DYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHG 218 (528)
T ss_pred cHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhH
Confidence 4555554332222223345678999999999999999999999999976544322211 1245678999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (594)
+++...+ .+..|+++++.+. ++..+++.|+++++|++.++|++++.+.+...
T Consensus 219 ~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------ 273 (528)
T PRK07470 219 AGIHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPA------------------------ 273 (528)
T ss_pred HHHHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcC------------------------
Confidence 9886543 5667777766543 89999999999999999999999998864211
Q ss_pred HhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCC-----
Q 007672 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD----- 430 (594)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~----- 430 (594)
.+..++ +++|.+++||+++++...+.+.+.++..+++.||+||+++.+......
T Consensus 274 -------------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~ 332 (528)
T PRK07470 274 -------------VDRYDH--------SSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAE 332 (528)
T ss_pred -------------cCCCCC--------cceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhcccc
Confidence 011112 289999999999999999988888899999999999998866544321
Q ss_pred --CccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCc
Q 007672 431 --EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV 508 (594)
Q Consensus 431 --~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~ 508 (594)
.....+++|.|+++++++++| +++.. ++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|++++||+
T Consensus 333 ~~~~~~~~~~G~~~~g~~~~i~d-~~~~~--~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~ 409 (528)
T PRK07470 333 DGPDARIGTCGFERTGMEVQIQD-DEGRE--LPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGF 409 (528)
T ss_pred ccccceeeccCcccCCcEEEEEC-CCCCC--CCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccCCe
Confidence 112337899999999999999 66554 4456899999999999999999999999888999999999999999999
Q ss_pred EEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc--ccee--------ee----
Q 007672 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK--VGIL--------EW---- 568 (594)
Q Consensus 509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~--~~~~--------~~---- 568 (594)
+++.||.||+|++ +|++|+|.+||++|.++|.|.+|+|++.+++ ++++..... .+.. .+
T Consensus 410 l~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 488 (528)
T PRK07470 410 LYITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGKVARYK 488 (528)
T ss_pred EEEeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCCHHHHHHHHHHhhhcCC
Confidence 9999999999996 8999999999999999999999999998775 233322211 1111 11
Q ss_pred --EeeeecCceeeecccccccccccc
Q 007672 569 --SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 569 --~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
..|.....||+|++||+.|+++++
T Consensus 489 ~P~~~~~~~~iP~t~~GKi~r~~l~~ 514 (528)
T PRK07470 489 LPKRFFFWDALPKSGYGKITKKMVRE 514 (528)
T ss_pred CCcEEEEeccCCCCCcccccHHHHHH
Confidence 225556679999999999998864
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=509.65 Aligned_cols=496 Identities=22% Similarity=0.252 Sum_probs=386.6
Q ss_pred CCCccccccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCC
Q 007672 20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99 (594)
Q Consensus 20 ~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~ 99 (594)
.++.+||+....... +..+|+.+.|.++++.+|+++|+++. .+ + +.+||.||.+++.++|+.|.+.|++
T Consensus 10 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~a~~~p~~~a~~~~---~~--~--~~~Ty~~l~~~~~~la~~L~~~g~~ 78 (546)
T PLN02330 10 DNEHIFRSRYPSVPV----PDKLTLPDFVLQDAELYADKVAFVEA---VT--G--KAVTYGEVVRDTRRFAKALRSLGLR 78 (546)
T ss_pred ccceeeccCCCCCCC----CCCCcHHHHHhhhhhcCCCccEEEec---CC--C--CcccHHHHHHHHHHHHHHHHHhCCC
Confidence 456778877655422 34688999999999999999999753 21 2 5799999999999999999999999
Q ss_pred CCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEe
Q 007672 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF 179 (594)
Q Consensus 100 ~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (594)
+||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++++++.....+... .. .++.+
T Consensus 79 ~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~------~~-~~i~~ 151 (546)
T PLN02330 79 KGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL------GL-PVIVL 151 (546)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc------CC-cEEEe
Confidence 999999999999999999999999999999999999999999999999999999998776554221 11 23333
Q ss_pred cCCcHHHHHHHhhCCcceeeHHHHHhcccccc--cccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhc
Q 007672 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257 (594)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~ 257 (594)
+.... .....|.+++....... .......++++++++|||||||.||+|+++|.++...+......+
T Consensus 152 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~- 220 (546)
T PLN02330 152 GEEKI----------EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV- 220 (546)
T ss_pred cCCCC----------CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc-
Confidence 32110 11234666654432211 122334578999999999999999999999999987665422111
Q ss_pred cccCCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHH
Q 007672 258 QFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 335 (594)
Q Consensus 258 ~~~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~ 335 (594)
.......++.+.++|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...
T Consensus 221 --~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---- 294 (546)
T PLN02330 221 --GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPI---- 294 (546)
T ss_pred --CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc----
Confidence 112234568999999999998864 6677899999988776 99999999999999999999999998864211
Q ss_pred hhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEee
Q 007672 336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQG 414 (594)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~ 414 (594)
...++++. .++|.+++||+++++++.+++.+.+ ++++++.
T Consensus 295 ---------------------------------~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~ 335 (546)
T PLN02330 295 ---------------------------------VEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEA 335 (546)
T ss_pred ---------------------------------ccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEec
Confidence 00111110 1589999999999999999999888 8999999
Q ss_pred ecccCCCCceeccC-CCC---ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc
Q 007672 415 YGLTETCGPTTVCF-PDE---MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490 (594)
Q Consensus 415 yG~tE~~~~~~~~~-~~~---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~ 490 (594)
||+||++.+..... +.. .....++|.|+++++++|+|.+++. +++.|+.|||+++|+.++.||+++++.+.+.+
T Consensus 336 YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~--~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~ 413 (546)
T PLN02330 336 YGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGR--SLPKNTPGELCVRSQCVMQGYYNNKEETDRTI 413 (546)
T ss_pred ccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCc--cCCCCCceEEEEecchhhhhhccCccchhhhc
Confidence 99999986554321 111 1223689999999999999933343 44566899999999999999999999998888
Q ss_pred -cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc-
Q 007672 491 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK- 562 (594)
Q Consensus 491 -~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~- 562 (594)
.+|||+|||+|++++||++++.||.+|+|++ +|++|+|.+||++|.++|.|.|++|++++++ ++++.....
T Consensus 414 ~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~ 492 (546)
T PLN02330 414 DEDGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKA 492 (546)
T ss_pred cCCCceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCC
Confidence 7899999999999999999999999999996 7999999999999999999999999998764 333332211
Q ss_pred -ccee--------ee-----Ee-eeecCceeeecccccccccccc
Q 007672 563 -VGIL--------EW-----SC-WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 563 -~~~~--------~~-----~~-~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.... .+ ++ +..+..+|+|++||+.|+.+++
T Consensus 493 ~~~~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~ 537 (546)
T PLN02330 493 KESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKE 537 (546)
T ss_pred CCCHHHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHH
Confidence 1111 11 22 6666789999999999999876
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=508.41 Aligned_cols=480 Identities=24% Similarity=0.285 Sum_probs=386.6
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..++.++|.+.++.+||++|+++. + +.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++|
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a 80 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLA 80 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 477999999999999999999875 4 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|+++..+.+++.++++.+++++++++......+....... . ...+........ .........+
T Consensus 81 ~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~------~~~~~~~~~~ 152 (523)
T PRK08316 81 CARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALL-P-VDTLILSLVLGG------REAPGGWLDF 152 (523)
T ss_pred HHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhc-C-ccceeeeecccc------cccccchhhH
Confidence 9999999999999999999999999999999999987766553322111 1 111111110000 0011123344
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
+++...... .........+++++++|||||||.||+|.++|++++.........+ ++..++++++.+|++|..+
T Consensus 153 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g 226 (523)
T PRK08316 153 ADWAEAGSV-AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCAQ 226 (523)
T ss_pred HHHHhcCCC-ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhhh
Confidence 444443221 1123345788999999999999999999999999998877766665 7889999999999999999
Q ss_pred HHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007672 281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (594)
Q Consensus 281 ~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (594)
+.. .+.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+...
T Consensus 227 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 279 (523)
T PRK08316 227 LDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPD--------------------------- 279 (523)
T ss_pred HHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcc---------------------------
Confidence 875 4456889999999865 99999999999999999999999988764211
Q ss_pred ccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC-ccccC
Q 007672 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCMVG 436 (594)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~-~~~~~ 436 (594)
.+..+++ ++|.+++||+.++.++.+.+.+.+ ++.+++.||+||++.++....+.. ....+
T Consensus 280 ----------~~~~~~~--------~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~ 341 (523)
T PRK08316 280 ----------FDTRDLS--------SLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPG 341 (523)
T ss_pred ----------cccCCcc--------cceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccC
Confidence 1111222 899999999999999999999887 789999999999998776654432 23347
Q ss_pred ccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccC
Q 007672 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 516 (594)
Q Consensus 437 ~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~ 516 (594)
++|.|+++++++|+| +++...+ .|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++++||++++.||.+
T Consensus 342 ~~G~~~~~~~~~i~~-~~~~~~~--~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~~ 418 (523)
T PRK08316 342 SAGRPVLNVETRVVD-DDGNDVA--PGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKK 418 (523)
T ss_pred CcccCCCCcEEEEEc-CCCCCCC--CCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEecccc
Confidence 899999999999999 6665444 4689999999999999999999999999999999999999999999999999999
Q ss_pred ceeEcCCceeechHHHHHHHhcCCCccceEEeecCCch------hhcccccc--cceee--------e------Eeeeec
Q 007672 517 NLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSSC------AMRRRHQK--VGILE--------W------SCWFIP 574 (594)
Q Consensus 517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~~------~~~~~~~~--~~~~~--------~------~~~~~p 574 (594)
|+|++ +|++|+|.+||+.|.++|+|.+++|++++++. ++++.... ..... + ..+...
T Consensus 419 ~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v 497 (523)
T PRK08316 419 DMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCRARLAGFKVPKRVIFV 497 (523)
T ss_pred cEEEe-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEe
Confidence 99996 89999999999999999999999999987752 22332211 11111 1 235666
Q ss_pred Cceeeecccccccccccc
Q 007672 575 GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 575 ~~i~~~~~gk~~r~~~~~ 592 (594)
+.+|+|++||+.|+++++
T Consensus 498 ~~~p~t~~gKi~r~~l~~ 515 (523)
T PRK08316 498 DELPRNPSGKILKRELRE 515 (523)
T ss_pred cCCCCCCccceeHHHHHH
Confidence 789999999999999875
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=506.57 Aligned_cols=478 Identities=22% Similarity=0.232 Sum_probs=385.3
Q ss_pred cHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 007672 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122 (594)
Q Consensus 43 tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~ 122 (594)
++.++|+..++++|+++|+.+. + +++||.||.+++.++|+.|++.|+.+|++|+++++|+.+++++++||+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 71 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA 71 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 4788999999999999999875 3 479999999999999999999999999999999999999999999999
Q ss_pred hcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHH
Q 007672 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202 (594)
Q Consensus 123 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (594)
++|++++|+++..+.+++..+++..+++++|++......+..... .......++.+++.... .........|++
T Consensus 72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 145 (515)
T TIGR03098 72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALP-GCHDLRTLILVGEPAHA-----SEGGGESPSWPK 145 (515)
T ss_pred hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhh-cccccceEEEecCcccc-----cCCccccccHHH
Confidence 999999999999999999999999999999998776554433221 22344455555543211 011222345666
Q ss_pred HHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHH
Q 007672 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282 (594)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~ 282 (594)
+...... ....+...+++++++|||||||.||+|.+||++++..+......+ .+..+|++++.+|++|.+++.
T Consensus 146 ~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~ 218 (515)
T TIGR03098 146 LLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFN 218 (515)
T ss_pred hhccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHH
Confidence 5543221 122344678999999999999999999999999999888776665 678899999999999999988
Q ss_pred HHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccC
Q 007672 283 IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361 (594)
Q Consensus 283 ~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (594)
..+.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+....
T Consensus 219 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------- 269 (515)
T TIGR03098 219 QLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP----------------------------- 269 (515)
T ss_pred HHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-----------------------------
Confidence 88889999999998876 899999999999999999999999887642100
Q ss_pred CCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCCccccCcccc
Q 007672 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 440 (594)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~ 440 (594)
..++ +++|.+++||+++++++.+.+.+.+ ++.+++.||+||++..............+++|.
T Consensus 270 ---------~~~~--------~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~ 332 (515)
T TIGR03098 270 ---------ESAA--------PSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGK 332 (515)
T ss_pred ---------CCCc--------cceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcce
Confidence 0011 2899999999999999999999888 788999999999987655443333334579999
Q ss_pred CccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc------------CCccccCceEEEcCCCc
Q 007672 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------------DGWFHTGDIGQILPNGV 508 (594)
Q Consensus 441 ~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~------------~g~~~TGDlg~~~~dG~ 508 (594)
|+++++++|++ +++..+ +.|+.|||+++|+.++.||+++++.+...|. ++||+|||+|++|+||+
T Consensus 333 ~~~~~~~~i~~-~~~~~~--~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~ 409 (515)
T TIGR03098 333 AIPNAEVLVLR-EDGSEC--APGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGF 409 (515)
T ss_pred ecCCCEEEEEC-CCCCCC--CCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCce
Confidence 99999999999 655543 4568999999999999999999988876652 34899999999999999
Q ss_pred EEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccc--ccccceee--------eEe--
Q 007672 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRR--HQKVGILE--------WSC-- 570 (594)
Q Consensus 509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~--~~~~~~~~--------~~~-- 570 (594)
+++.||.+|+|++ +|.+|+|.+||++|.++|.|.||+|++++++ +++++. ....+..+ +..
T Consensus 410 l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 488 (515)
T TIGR03098 410 LYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDRAALLAECRARLPNYM 488 (515)
T ss_pred EEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCCHHHHHHHHHhhCcccc
Confidence 9999999999996 7999999999999999999999999998774 333321 11112111 122
Q ss_pred ----eeecCceeeecccccccccccc
Q 007672 571 ----WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 571 ----~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+.....||+|.+||+.|+++++
T Consensus 489 ~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 489 VPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred CCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 4445679999999999999864
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-59 Score=509.17 Aligned_cols=477 Identities=21% Similarity=0.278 Sum_probs=378.8
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
.++.++|++.++++||++|+++. ++ +.+||+||.+++.++|++|++.|+++||+|+++++|+++++++++||
T Consensus 23 ~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~ 94 (547)
T PRK06087 23 ASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC 94 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 57999999999999999999854 43 57999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchh-----HHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcc
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK-----VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (594)
+++|++++|+++..+.+++.++++.++++++++++.. ...+.. ........+.++..+..... ..
T Consensus 95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~ 164 (547)
T PRK06087 95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILP-LQNQLPQLQQIVGVDKLAPA---------TS 164 (547)
T ss_pred HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHH-HHhhCCCCcEEEEeCCcCCC---------cC
Confidence 9999999999999999999999999999999997632 111111 11122344455555433210 01
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChh
Q 007672 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (594)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 276 (594)
..++.++....... ........+++++++|||||||.||+|+++|.+++.....+...+ ++..++++++.+|++
T Consensus 165 ~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~ 238 (547)
T PRK06087 165 SLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPLG 238 (547)
T ss_pred ccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecchH
Confidence 22444444332111 122234678999999999999999999999999998877766555 678899999999999
Q ss_pred HHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 277 ~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
|.+++.. .+.++..|+++++... ++..+++.|+++++|+++++|..+..+++......
T Consensus 239 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~-------------------- 298 (547)
T PRK06087 239 HATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQP-------------------- 298 (547)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCC--------------------
Confidence 9999875 6667889999998876 99999999999999999988877766654221100
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC-cc
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MC 433 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-~~ 433 (594)
.++ +++|.+++||+++++++.+.+... ++++++.||+||++.+........ ..
T Consensus 299 -----------------~~~--------~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~ 352 (547)
T PRK06087 299 -----------------ADL--------SALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSR 352 (547)
T ss_pred -----------------CCC--------CCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhh
Confidence 011 289999999999999999888765 999999999999988766544322 12
Q ss_pred ccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEEE
Q 007672 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII 512 (594)
Q Consensus 434 ~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~ 512 (594)
...++|.|++++.++++| +++.. ++.|+.|||+++|+.++.||+++++.+...+ .+|||+|||+|++|+||+++++
T Consensus 353 ~~~~~G~~~~~~~~~i~d-~~~~~--~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~ 429 (547)
T PRK06087 353 FMHTDGYAAAGVEIKVVD-EARKT--LPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKIT 429 (547)
T ss_pred cCCcCCccCCCceEEEEc-CCCCC--CcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEE
Confidence 235789999999999999 66654 4566899999999999999999999998888 6899999999999999999999
Q ss_pred eccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc---ccc---------eeeeEe----
Q 007672 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ---KVG---------ILEWSC---- 570 (594)
Q Consensus 513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~---~~~---------~~~~~~---- 570 (594)
||.+|+|+. +|++|+|.+||++|.++|+|.+++|++.+++ ++++.... ..+ ...+..
T Consensus 430 GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~P 508 (547)
T PRK06087 430 GRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYP 508 (547)
T ss_pred ecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCHHHHHHHHHhccccccCCC
Confidence 999999995 8999999999999999999999999998765 23333221 111 112333
Q ss_pred --eeecCceeeecccccccccccc
Q 007672 571 --WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 571 --~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
|.....||+|.+||+.|+.+++
T Consensus 509 ~~i~~v~~iP~t~sGK~~r~~l~~ 532 (547)
T PRK06087 509 EHIVVIDKLPRTASGKIQKFLLRK 532 (547)
T ss_pred eEEEEeccCCCCCCCcCcHHHHHH
Confidence 4444679999999999988764
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-59 Score=503.08 Aligned_cols=467 Identities=21% Similarity=0.286 Sum_probs=375.8
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
|.++.++|.++++++|+++|+++. + +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (497)
T PRK06145 1 MFNLSASIAFHARRTPDRAALVYR---D------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA 71 (497)
T ss_pred CccHHHHHHHHHHHCCCceEEEEC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999875 3 4799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|+++..+.+++.++++.+++++++++.+....... ....+.++..... .+
T Consensus 72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~-------------~~ 130 (497)
T PRK06145 72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL--------ETPKIVIDAAAQA-------------DS 130 (497)
T ss_pred HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc--------ccceEEecCcccc-------------hh
Confidence 99999999999999999999999999999999998765433210 0112222221100 01
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
..+.... ..........++++++++|||||||.||+|+++|.++...+......+ ++..+++++..+|++|.++
T Consensus 131 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~ 204 (497)
T PRK06145 131 RRLAQGG-LEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGA 204 (497)
T ss_pred HHHhccC-CCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhH
Confidence 1111100 001112234678999999999999999999999999987665544444 6788999999999999998
Q ss_pred HHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007672 281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (594)
Q Consensus 281 ~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (594)
+.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..++......
T Consensus 205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~------------------------- 259 (497)
T PRK06145 205 FDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD------------------------- 259 (497)
T ss_pred HHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcc-------------------------
Confidence 865 5667889999988776 9999999999999999999999999886421110
Q ss_pred ccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCC-CccccC
Q 007672 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD-EMCMVG 436 (594)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~ 436 (594)
..+++ ++|.+++||+++++++.+.+.+.+ +..+++.||+||++..++..... .....+
T Consensus 260 ------------~~~~~--------~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~ 319 (497)
T PRK06145 260 ------------RFDLD--------SLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIG 319 (497)
T ss_pred ------------ccccc--------cceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCC
Confidence 11122 799999999999999999998887 67899999999999866554332 222347
Q ss_pred ccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccC
Q 007672 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 516 (594)
Q Consensus 437 ~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~ 516 (594)
++|.|++++++++++ +++.. ++.++.|||+++|++++.||+++++.+.+.|.++||+|||+|++|+||++++.||.+
T Consensus 320 ~~G~~~~~~~~~i~~-~~~~~--~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~ 396 (497)
T PRK06145 320 STGRALAHVEIRIAD-GAGRW--LPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKK 396 (497)
T ss_pred CcccCCCCceEEEEC-CCCCC--CCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCCcEEEecccc
Confidence 899999999999999 65544 445689999999999999999999999999999999999999999999999999999
Q ss_pred ceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc--cceeee--------------Eeeeec
Q 007672 517 NLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK--VGILEW--------------SCWFIP 574 (594)
Q Consensus 517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~--~~~~~~--------------~~~~~p 574 (594)
|+|++ +|++++|.+||++|.++|+|.+++|++.+++ +++++.... ....++ ..+..+
T Consensus 397 ~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v 475 (497)
T PRK06145 397 DMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQRLASFKVPRQLKVR 475 (497)
T ss_pred ceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCCEEEEe
Confidence 99996 8999999999999999999999999998764 333333211 111111 236667
Q ss_pred Cceeeecccccccccccc
Q 007672 575 GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 575 ~~i~~~~~gk~~r~~~~~ 592 (594)
+.||+|++||+.|+++++
T Consensus 476 ~~iP~t~~GKi~r~~l~~ 493 (497)
T PRK06145 476 DELPRNPSGKVLKRVLRD 493 (497)
T ss_pred ccCCCCCcccccHHHHHH
Confidence 789999999999998875
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=509.48 Aligned_cols=477 Identities=24% Similarity=0.259 Sum_probs=387.2
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
..+|+.+.|..+++.+||++|+.+. + +.+||.||.++++++|.+|.+.|+++|++|+|+++|+++++++++
T Consensus 15 ~~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~ 85 (542)
T PRK07786 15 RRQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL 85 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4588999999999999999999875 4 479999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceee
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (594)
||+++|++++|+++..+.+++.++++++++++++++......+. ......+..+.++..++... ....+
T Consensus 86 a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~~~~ 154 (542)
T PRK07786 86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVAT-AVRDIVPLLSTVVVAGGSSD----------DSVLG 154 (542)
T ss_pred HHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHH-HhhhccCccceEEEecCCCc----------ccccC
Confidence 99999999999999999999999999999999999987655432 22222244555555543211 12245
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCC-CCCcEEEEecChhHH
Q 007672 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM-TVDDVYLSFLPLAHI 278 (594)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pl~~~ 278 (594)
++++...... .........+++++++|||||||.||+|.++|+++...+......+ ++ ..++++++..|++|.
T Consensus 155 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~ 228 (542)
T PRK07786 155 YEDLLAEAGP-AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFHI 228 (542)
T ss_pred HHHHhhccCC-CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHHH
Confidence 6665543322 1222345567899999999999999999999999998887765554 44 567899999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (594)
+|+..++.++..|+++++.+. ++..+++.|+++++|+++++|.++..+.........
T Consensus 229 ~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~-------------------- 288 (542)
T PRK07786 229 AGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPR-------------------- 288 (542)
T ss_pred HHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCcc--------------------
Confidence 998778889999999998652 899999999999999999999999998653211000
Q ss_pred HhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC-cc
Q 007672 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MC 433 (594)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~-~~ 433 (594)
..++|.+++||+++++++.+.+.+.+ +..+++.||+||++.+......+. ..
T Consensus 289 --------------------------~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~ 342 (542)
T PRK07786 289 --------------------------DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIR 342 (542)
T ss_pred --------------------------CcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccc
Confidence 01689999999999999999999888 789999999999988765443322 23
Q ss_pred ccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEe
Q 007672 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513 (594)
Q Consensus 434 ~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~G 513 (594)
..+++|.|++++.++|+| +++... +.|+.|||+++|+.++.||+++++.+...|.+|||+|||++++++||++++.|
T Consensus 343 ~~~~~G~~~~~~~~~i~d-~~~~~~--~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~G 419 (542)
T PRK07786 343 KLGSVGKVIPTVAARVVD-ENMNDV--PVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVD 419 (542)
T ss_pred cCCCccccCCCceEEEEC-CCCCCC--cCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEEe
Confidence 347899999999999999 666544 45689999999999999999999999999999999999999999999999999
Q ss_pred ccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc---ccee--------eeE------e
Q 007672 514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK---VGIL--------EWS------C 570 (594)
Q Consensus 514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~---~~~~--------~~~------~ 570 (594)
|.+|+|++ +|++|+|.+||++|.++|.|.+|+|++.+++ ++++..... .... .+. .
T Consensus 420 R~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 498 (542)
T PRK07786 420 RKKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKA 498 (542)
T ss_pred cccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCHHHHHHHHHhhccCCCCCCE
Confidence 99999996 8999999999999999999999999987653 333332211 1111 122 2
Q ss_pred eeecCceeeecccccccccccc
Q 007672 571 WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 571 ~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+.....||+|++||+.|+++++
T Consensus 499 i~~v~~iP~t~~GKv~r~~L~~ 520 (542)
T PRK07786 499 LEIVDALPRNPAGKVLKTELRE 520 (542)
T ss_pred EEEeccCCCCCcccccHHHHHH
Confidence 5556689999999999988764
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=525.82 Aligned_cols=469 Identities=19% Similarity=0.253 Sum_probs=361.4
Q ss_pred CcCcHHHHHHHHHHcCCC-CcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd-~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
+..|+.++|.++++++|+ ++|+... + ++.+||+||.++++++|++|.+. +++||+|+|+++|++++++++
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~---~-----~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~ 272 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDV---N-----FTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVI 272 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcC---C-----CCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHH
Confidence 447899999999999998 5777532 1 25799999999999999999987 599999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHh-cccccccccccEEEEecCCcHHHHHHHhhCCcce
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 197 (594)
+||+++|++++|+++.++++++.+++++++++++|++.+...... ............ +.+++... .
T Consensus 273 lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~------------~ 339 (718)
T PRK08043 273 FGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRW-VYLEDLKD------------D 339 (718)
T ss_pred HHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccE-EEhhhhhh------------h
Confidence 999999999999999999999999999999999999877544211 001111111222 22222100 0
Q ss_pred eeHHHH-H--hcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecC
Q 007672 198 YSWDEF-L--HLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274 (594)
Q Consensus 198 ~~~~~~-~--~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 274 (594)
..+... . ..............++++++++|||||||.||+|++||.++.+.+......+ ++..+|++++.+|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~P 414 (718)
T PRK08043 340 VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALP 414 (718)
T ss_pred cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCc
Confidence 011100 0 0000000111234678999999999999999999999999999887766655 7889999999999
Q ss_pred hhHHHHHHH-HHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007672 275 LAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (594)
Q Consensus 275 l~~~~~~~~-~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (594)
++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+..
T Consensus 415 l~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--------------------- 473 (718)
T PRK08043 415 LFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--------------------- 473 (718)
T ss_pred chhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc---------------------
Confidence 999999875 6678999999998764 6678889999999999999999987664310
Q ss_pred HHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC
Q 007672 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431 (594)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~ 431 (594)
+..++ ++||.+++||+++++++.+.+.+.+|+.+++.||+||+++.++...+..
T Consensus 474 ------------------~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~ 527 (718)
T PRK08043 474 ------------------NPYDF--------ARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMA 527 (718)
T ss_pred ------------------Ccccc--------cceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcc
Confidence 00112 2899999999999999999999888999999999999988766554333
Q ss_pred ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCC--chh-------hhhcc-cCCccccCceE
Q 007672 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN--PDL-------TRESI-IDGWFHTGDIG 501 (594)
Q Consensus 432 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~--~~~-------~~~~~-~~g~~~TGDlg 501 (594)
. ..+++|+|+||++++|+| +++. ++.|||+++|++++.||+++ ++. +.+.+ .+|||+|||+|
T Consensus 528 ~-~~~svG~p~pg~~~~i~d-~~~~------~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg 599 (718)
T PRK08043 528 A-KPGTVGRILPGMDARLLS-VPGI------EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIV 599 (718)
T ss_pred c-CCCCCCCcCCCCeeEEec-CCCC------CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEE
Confidence 2 348999999999999998 4331 25699999999999999983 442 22222 57999999999
Q ss_pred EEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccce--------ee
Q 007672 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGI--------LE 567 (594)
Q Consensus 502 ~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~--------~~ 567 (594)
++|+||++++.||.||+|++ +|++|+|.|||++|.+|+.+.+++|++.+++ ++++.. ...+. ..
T Consensus 600 ~~d~dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~-~~~~~~~l~~~~~~~ 677 (718)
T PRK08043 600 RFDEQGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTD-SELTREKLQQYAREH 677 (718)
T ss_pred EEcCCCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcC-cccCHHHHHHHHHhc
Confidence 99999999999999999996 7999999999999999999999999988774 222211 11111 11
Q ss_pred -eEeeee------cCceeeecccccccccccc
Q 007672 568 -WSCWFI------PGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 568 -~~~~~~------p~~i~~~~~gk~~r~~~~~ 592 (594)
+..|++ .+.+|+|++||++|+++++
T Consensus 678 ~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~ 709 (718)
T PRK08043 678 GVPELAVPRDIRYLKQLPLLGSGKPDFVTLKS 709 (718)
T ss_pred CCCcccCCceEEEecccCcCCCCCcCHHHHHH
Confidence 333444 4569999999999999875
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-60 Score=564.21 Aligned_cols=487 Identities=18% Similarity=0.135 Sum_probs=374.4
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCC---CCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGK---FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~---~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~ 117 (594)
..++.++|+++++++||++|+++. +.. .+..+++||+||.++++++|++|++.|+++|++|+|+++|+++++++
T Consensus 235 ~~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~ 311 (1389)
T TIGR03443 235 RGAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVA 311 (1389)
T ss_pred cCcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHH
Confidence 468999999999999999999864 211 12346899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH---HHHhcccccc---cccccEEEEecCCcHHHHHHHh
Q 007672 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---KELLSPDCRS---AQRLRVMVCFTSLTAEQKEMAV 191 (594)
Q Consensus 118 ~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~---~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~ 191 (594)
++||+++|++++|++|.++.+++.++++.+++++++++.... ..+....... ...+..+...++...
T Consensus 312 ~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 384 (1389)
T TIGR03443 312 VMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSL------- 384 (1389)
T ss_pred HHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccc-------
Confidence 999999999999999999999999999999999999876421 1110000000 001111111111000
Q ss_pred hCCcceeeHHHHHhccc--ccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEE
Q 007672 192 QTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY 269 (594)
Q Consensus 192 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (594)
..........++..... ..........++++++++|||||||.||||+++|+++.+.+......+ ++..+|++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~ 459 (1389)
T TIGR03443 385 VGGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKF 459 (1389)
T ss_pred cccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEE
Confidence 00000000000000000 001111234678999999999999999999999999999988877766 78889999
Q ss_pred EEecChhHHHHHHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 007672 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345 (594)
Q Consensus 270 ~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (594)
+...|++|..++..++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.|..... .
T Consensus 460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~---------- 526 (1389)
T TIGR03443 460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT---T---------- 526 (1389)
T ss_pred EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc---c----------
Confidence 999999999888888899999999998764 68899999999999999999999988753110 0
Q ss_pred HHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCce
Q 007672 346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT 424 (594)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~ 424 (594)
++ +++|.+++||+++++.+.+.+.... ++.+++.||+||++..+
T Consensus 527 ---------------------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 571 (1389)
T TIGR03443 527 ---------------------------PI--------PSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAV 571 (1389)
T ss_pred ---------------------------cC--------CCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeE
Confidence 01 2899999999999999998887765 78999999999998866
Q ss_pred eccCCCC----------ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc---
Q 007672 425 TVCFPDE----------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--- 491 (594)
Q Consensus 425 ~~~~~~~----------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~--- 491 (594)
+...... .....++|.|+++++++|+| +++...+++.|+.|||+|+|++++.||+++|+.+.++|.
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~ 650 (1389)
T TIGR03443 572 SYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNW 650 (1389)
T ss_pred EEEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCc
Confidence 5432111 01225789999999999999 666556667779999999999999999999999998872
Q ss_pred --------------------------CCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccce
Q 007672 492 --------------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDP 545 (594)
Q Consensus 492 --------------------------~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~ 545 (594)
++||+|||+|++++||+|+++||.||+||+ +|++|+|.|||++|.+||.|.+|
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a 729 (1389)
T TIGR03443 651 FVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVREN 729 (1389)
T ss_pred ccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchhee
Confidence 479999999999999999999999999997 89999999999999999999999
Q ss_pred EEeecCCc------hhhccccc---cc----------------------------c-----eeeeEeeeec------Cce
Q 007672 546 QVNVSCSS------CAMRRRHQ---KV----------------------------G-----ILEWSCWFIP------GTL 577 (594)
Q Consensus 546 ~V~g~~~~------~~~~~~~~---~~----------------------------~-----~~~~~~~~~p------~~i 577 (594)
+|++.++. +++++... .. . ...++.|++| +.|
T Consensus 730 ~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~l 809 (1389)
T TIGR03443 730 VTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKL 809 (1389)
T ss_pred EEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccC
Confidence 99876553 33333220 00 0 0123445555 569
Q ss_pred eeecccccccccccc
Q 007672 578 FTCSATKLYPLRAEE 592 (594)
Q Consensus 578 ~~~~~gk~~r~~~~~ 592 (594)
|+|++||+.|++++.
T Consensus 810 P~t~~GKidr~~L~~ 824 (1389)
T TIGR03443 810 PLNPNGKVDKPALPF 824 (1389)
T ss_pred CCCCCccccHhhcCC
Confidence 999999999999864
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=510.79 Aligned_cols=492 Identities=22% Similarity=0.287 Sum_probs=376.0
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
.+++.++|.++++++|+++|+++. + +.+||.||.++++++|+.|.+. |+++||+|+++++|+++++++++
T Consensus 23 ~~~~~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l 93 (562)
T PRK12492 23 YKSVVEVFERSCKKFADRPAFSNL---G------VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF 93 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEecC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 368999999999999999999754 2 4799999999999999999985 99999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEec--CCcHH------------
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT--SLTAE------------ 185 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~------------ 185 (594)
||+++|++++++++..+.+++.+++++++++.+++++............ .....++... +....
T Consensus 94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
T PRK12492 94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPD--TGIEYLIEAKMGDLLPAAKGWLVNTVVDK 171 (562)
T ss_pred HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhc--cCceEEEeechhhccccccchhccccccc
Confidence 9999999999999999999999999999999999987543332221110 0111111100 00000
Q ss_pred HHH-HHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccC---
Q 007672 186 QKE-MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED--- 261 (594)
Q Consensus 186 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~--- 261 (594)
... ...........|+++................+++++++|||||||.||+|+++|+++...+......+.....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~ 251 (562)
T PRK12492 172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ 251 (562)
T ss_pred ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence 000 0000011224566665433222222234567899999999999999999999999998877665543321110
Q ss_pred -CCCC-CcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHh
Q 007672 262 -KMTV-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336 (594)
Q Consensus 262 -~~~~-~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~ 336 (594)
.... .+++++.+|++|.+++.. .+..+..|.++++... ++..+++.|+++++|++.++|+++..+.+...
T Consensus 252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----- 326 (562)
T PRK12492 252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG----- 326 (562)
T ss_pred ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC-----
Confidence 0222 357899999999999865 4556778887776543 88999999999999999999999988764211
Q ss_pred hchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeec
Q 007672 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 416 (594)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG 416 (594)
....+++ ++|.+++||+++++++.+.+.+.+++++++.||
T Consensus 327 --------------------------------~~~~~~~--------~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG 366 (562)
T PRK12492 327 --------------------------------FKDLDFS--------ALKLTNSGGTALVKATAERWEQLTGCTIVEGYG 366 (562)
T ss_pred --------------------------------ccccccc--------ceeEEEeccccCCHHHHHHHHHHhCCceeeccC
Confidence 0111222 899999999999999999998888999999999
Q ss_pred ccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCcc
Q 007672 417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 495 (594)
Q Consensus 417 ~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~ 495 (594)
+||++.++...........+++|.|+++++++|+| +++.. ++.|+.|||+++|+.++.||+++++.+.+.| .+|||
T Consensus 367 ~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~--~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~ 443 (562)
T PRK12492 367 LTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNE--LPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWF 443 (562)
T ss_pred ccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCCC--CCCCCceEEEEeCCccccccccCchhhhhcccCCCce
Confidence 99998877655443333347899999999999999 65554 4456899999999999999999999999888 68999
Q ss_pred ccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc-ccccee--
Q 007672 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH-QKVGIL-- 566 (594)
Q Consensus 496 ~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~-~~~~~~-- 566 (594)
+|||+|++|+||++++.||.+|+|++ +|++|+|.+||++|.+||.|.+|+|++.++. ++++... ......
T Consensus 444 ~TGD~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~i 522 (562)
T PRK12492 444 KTGDIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLSVEEL 522 (562)
T ss_pred ecCcEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999996 7999999999999999999999999998763 2232221 111111
Q ss_pred ------ee------EeeeecCceeeecccccccccccc
Q 007672 567 ------EW------SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 567 ------~~------~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.+ .++...+.+|+|++||+.|+.+++
T Consensus 523 ~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~ 560 (562)
T PRK12492 523 KAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRD 560 (562)
T ss_pred HHHHHHhcccccCCcEEEEeccCCCCCCCceeHHHHHh
Confidence 12 235667789999999999999886
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-59 Score=515.81 Aligned_cols=474 Identities=18% Similarity=0.207 Sum_probs=358.3
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCC---CCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~---~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~ 116 (594)
...++.+++.++++++|+++|+++. +. ..|.++.+||.||.+++.++|++|.+. +++||+|+++++|++++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~ 107 (612)
T PRK12476 32 PGTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVA 107 (612)
T ss_pred ccCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHH
Confidence 3478999999999999999999875 32 234567899999999999999999986 9999999999999999999
Q ss_pred HHHHHHhcCCEEeec-CCCCC--hhHHHHHHhhcCceEEEEcchhHHHHhcccccccc--cccEEEEecCCcHHHHHHHh
Q 007672 117 AMEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ--RLRVMVCFTSLTAEQKEMAV 191 (594)
Q Consensus 117 ~~~A~~~~G~~~v~i-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~ 191 (594)
+++||+++|++++|+ ++..+ ++++.+++++++++++|+++.....+..... ... ....++.+++...
T Consensus 108 ~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~------- 179 (612)
T PRK12476 108 GFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLR-NLPRLRRPRVIAIDAIPD------- 179 (612)
T ss_pred HHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHh-hcccccCceEEEeccccc-------
Confidence 999999999999999 57766 7899999999999999998776554322111 111 1123343332110
Q ss_pred hCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCC-CCCCcEEE
Q 007672 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYL 270 (594)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~-~~~~~~~~ 270 (594)
.. ..........++++++++|||||||.||||+++|+++.+.+......+ + +.++++++
T Consensus 180 --------------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l 239 (612)
T PRK12476 180 --------------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGV 239 (612)
T ss_pred --------------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEE
Confidence 00 001111234578999999999999999999999999988776655444 4 67789999
Q ss_pred EecChhHHHHHHHHHHhhhcCcEEEEecC-----ChHHHHHHHh--hhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 007672 271 SFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (594)
Q Consensus 271 ~~~pl~~~~~~~~~l~~l~~G~~~~~~~~-----~~~~~~~~i~--~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (594)
+++|++|.+++...+.++..|+++++... ++..+++.++ ++++++++++|.++..+........
T Consensus 240 ~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~--------- 310 (612)
T PRK12476 240 SWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPA--------- 310 (612)
T ss_pred EeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChh---------
Confidence 99999999998766655555555555432 7889999994 5899999999998887754210000
Q ss_pred HHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc---CC---ceEeeecc
Q 007672 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGL 417 (594)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~---~~---~i~~~yG~ 417 (594)
....++++ ++| +++||+++++++.+.+.+.+ |+ .+++.||+
T Consensus 311 ------------------------~~~~~~l~--------~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~ 357 (612)
T PRK12476 311 ------------------------EGDDIDLS--------NVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGI 357 (612)
T ss_pred ------------------------hhcCcchh--------Hhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccch
Confidence 00112233 789 99999999999999998877 44 48999999
Q ss_pred cCCCCceeccCCCCc--------------------------cccCccccCccCceEEeeecCC-CCCCCCCCCCCceEEE
Q 007672 418 TETCGPTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPE-MGYSPLDDPPCGEVCV 470 (594)
Q Consensus 418 tE~~~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~~~i~d~~~-~~~~~~~~~~~Gei~v 470 (594)
||++..++...+... ...+++|+|+++++++|+| ++ +..+ +.|+.|||++
T Consensus 358 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~g~~~--~~g~~GEl~v 434 (612)
T PRK12476 358 AEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDTGAEL--PDGEVGEIWL 434 (612)
T ss_pred hhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCCCcCC--CCCCEEEEEE
Confidence 999866544322110 0124789999999999999 55 5544 4568999999
Q ss_pred ccCCcccccCCCchhhhhccc-------------------CCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHH
Q 007672 471 RGKTLFSGYYKNPDLTRESII-------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEY 531 (594)
Q Consensus 471 ~g~~v~~gY~~~~~~~~~~~~-------------------~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~ 531 (594)
+|++++.||+++++.+.+.|. ++||+|||+|+++ ||+|+|+||.||+|++ +|++|+|.|
T Consensus 435 ~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~-~G~~I~p~e 512 (612)
T PRK12476 435 HGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVI-DGRNHYPQD 512 (612)
T ss_pred cCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEE-CCcccCHHH
Confidence 999999999999999988873 2499999999984 9999999999999997 899999999
Q ss_pred HHHHHhc-CCCccc--eEEeecCCc-----hhhccccc---ccceee--------------e-Ee---eeecCceeeecc
Q 007672 532 LENVYCV-APIIED--PQVNVSCSS-----CAMRRRHQ---KVGILE--------------W-SC---WFIPGTLFTCSA 582 (594)
Q Consensus 532 iE~~l~~-~p~V~~--~~V~g~~~~-----~~~~~~~~---~~~~~~--------------~-~~---~~~p~~i~~~~~ 582 (594)
||++|.+ ||.|.+ ++|++++++ +++++... ..+..+ + ++ ++....||+|++
T Consensus 513 IE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~ 592 (612)
T PRK12476 513 IEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGTSRADPAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTS 592 (612)
T ss_pred HHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCcccccHHHHHHHHHHHHHHhhCCcceEEEEECCCCcCcCCc
Confidence 9999985 899999 777887764 23333211 111111 1 11 222246999999
Q ss_pred cccccccccc
Q 007672 583 TKLYPLRAEE 592 (594)
Q Consensus 583 gk~~r~~~~~ 592 (594)
||++|+++++
T Consensus 593 GKi~r~~L~~ 602 (612)
T PRK12476 593 GKLARRACRA 602 (612)
T ss_pred hHHHHHHHHH
Confidence 9999999986
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=505.90 Aligned_cols=482 Identities=26% Similarity=0.350 Sum_probs=380.9
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
...++.++|.+.++++|+++|+++. +.. +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++
T Consensus 16 ~~~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~ 88 (558)
T PRK12583 16 LTQTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQF 88 (558)
T ss_pred ccCcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHH
Confidence 3467999999999999999999875 332 579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHH-----HHhc---cc---------ccccccccEEEEecCC
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLS---PD---------CRSAQRLRVMVCFTSL 182 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~---~~---------~~~~~~~~~v~~~~~~ 182 (594)
||+++|++++++++..+.+++.+++++++++++|+++.... .+.. .. ....+.+..++..+..
T Consensus 89 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (558)
T PRK12583 89 ATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA 168 (558)
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCC
Confidence 99999999999999999999999999999999999764321 1100 00 0011222333333322
Q ss_pred cHHHHHHHhhCCcceeeHHHHHhccccc-----ccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhc
Q 007672 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257 (594)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~ 257 (594)
.. .....|+++....... ........++++++++|||||||.||+|.++|+++.+.+......+
T Consensus 169 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~- 237 (558)
T PRK12583 169 PP----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL- 237 (558)
T ss_pred CC----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh-
Confidence 11 1223444443322110 1112234678899999999999999999999999998888776666
Q ss_pred cccCCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHH
Q 007672 258 QFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334 (594)
Q Consensus 258 ~~~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~ 334 (594)
++..+|++++.+|++|.++... .+.++..|+++++... ++..+++.++++++|+++++|+++..+......
T Consensus 238 ----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-- 311 (558)
T PRK12583 238 ----GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQR-- 311 (558)
T ss_pred ----CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc--
Confidence 7888999999999999999875 6667888999887643 899999999999999999999998776532110
Q ss_pred HhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC-CceEe
Q 007672 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQ 413 (594)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~-~~i~~ 413 (594)
+..+++ ++|.+++||+++++++.+.+.+.++ ..+++
T Consensus 312 -----------------------------------~~~~~~--------~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~ 348 (558)
T PRK12583 312 -----------------------------------GNFDLS--------SLRTGIMAGAPCPIEVMRRVMDEMHMAEVQI 348 (558)
T ss_pred -----------------------------------cCCCch--------hheEEEecCCCCCHHHHHHHHHHcCCcceec
Confidence 001122 8999999999999999999988875 46999
Q ss_pred eecccCCCCceeccCCCC--ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-
Q 007672 414 GYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490 (594)
Q Consensus 414 ~yG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~- 490 (594)
.||+||++.++....... .....++|.|.+++.++|+| +++. +++.|+.|||+++|+.++.||+++++.+...|
T Consensus 349 ~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~ 425 (558)
T PRK12583 349 AYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGA--TVPRGEIGELCTRGYSVMKGYWNNPEATAESID 425 (558)
T ss_pred cccccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCCC--CCCCCCeeEEEEEeCccchhhcCChHHHHhhcC
Confidence 999999998876654322 22347899999999999999 5544 44556899999999999999999999998888
Q ss_pred cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc--
Q 007672 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK-- 562 (594)
Q Consensus 491 ~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~-- 562 (594)
.+|||+|||+|++++||++++.||.+|+|++ +|++|+|.+||++|.++|+|.+|+|++++++ +++++.+..
T Consensus 426 ~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 504 (558)
T PRK12583 426 EDGWMHTGDLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHA 504 (558)
T ss_pred CCCCeeccceEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCC
Confidence 8999999999999999999999999999996 8999999999999999999999999998764 333332211
Q ss_pred ccee--------ee------EeeeecCceeeecccccccccccc
Q 007672 563 VGIL--------EW------SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 563 ~~~~--------~~------~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.... .+ ..+.....+|+|++||+.|+++++
T Consensus 505 ~~~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~ 548 (558)
T PRK12583 505 ASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMRE 548 (558)
T ss_pred CCHHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHHHHH
Confidence 1111 11 225556689999999999998865
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=505.44 Aligned_cols=484 Identities=26% Similarity=0.335 Sum_probs=382.6
Q ss_pred CCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 007672 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (594)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~ 117 (594)
+....+|.++|.+.++++|+++|+++. ++. +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++
T Consensus 12 ~~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~ 84 (559)
T PRK08315 12 PLLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLT 84 (559)
T ss_pred ChhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHH
Confidence 345568999999999999999999875 433 5799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHH-----HHhc---ccc---------cccccccEEEEec
Q 007672 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLS---PDC---------RSAQRLRVMVCFT 180 (594)
Q Consensus 118 ~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~---~~~---------~~~~~~~~v~~~~ 180 (594)
++||+++|++++|++|..+.+++..++++++++++++++.... .+.. ... ...+..+.++..+
T Consensus 85 ~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (559)
T PRK08315 85 QFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLG 164 (559)
T ss_pred HHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeec
Confidence 9999999999999999999999999999999999999875321 1100 000 0011223333333
Q ss_pred CCcHHHHHHHhhCCcceeeHHHHHhcccc---c--ccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhh
Q 007672 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKV---N--EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255 (594)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~ 255 (594)
... ......|+++...... . .........+++++++|||||||.||+|.++|++++..+..+...
T Consensus 165 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~ 234 (559)
T PRK08315 165 DEK----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEA 234 (559)
T ss_pred ccC----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHh
Confidence 211 0122345554432211 0 111223467889999999999999999999999999888887766
Q ss_pred hccccCCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHH
Q 007672 256 LDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK 332 (594)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~ 332 (594)
+ ++..+|+++..+|++|.+++.. ++.++..|+++++... ++..+++.++++++|+++++|+++..+......
T Consensus 235 ~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~ 309 (559)
T PRK08315 235 M-----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDF 309 (559)
T ss_pred c-----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCccc
Confidence 6 7889999999999999999875 6678899999986543 899999999999999999999999876542110
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCc-e
Q 007672 333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-L 411 (594)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~-i 411 (594)
+..++ ++||.+++||++++.++.+.+.+.++.. +
T Consensus 310 -------------------------------------~~~~~--------~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l 344 (559)
T PRK08315 310 -------------------------------------ARFDL--------SSLRTGIMAGSPCPIEVMKRVIDKMHMSEV 344 (559)
T ss_pred -------------------------------------CCCCc--------hhhheeEecCCCCCHHHHHHHHHHcCCcce
Confidence 01112 2899999999999999999998888655 9
Q ss_pred EeeecccCCCCceeccCCCC--ccccCccccCccCceEEeeecCC-CCCCCCCCCCCceEEEccCCcccccCCCchhhhh
Q 007672 412 VQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPE-MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488 (594)
Q Consensus 412 ~~~yG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~-~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~ 488 (594)
++.||+||++.+++...... .....++|.|+++++++|+| ++ +.. ++.|+.|||+|+|+.++.||+++++.+..
T Consensus 345 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~--~~~g~~GEl~v~g~~~~~gy~~~~~~~~~ 421 (559)
T PRK08315 345 TIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETGET--VPRGEQGELCTRGYSVMKGYWNDPEKTAE 421 (559)
T ss_pred eEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccCCc--CCCCCceEEEEECchhhhhhcCChhHHhh
Confidence 99999999988766554332 22347899999999999999 54 544 44568999999999999999999999998
Q ss_pred cc-cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc
Q 007672 489 SI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ 561 (594)
Q Consensus 489 ~~-~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~ 561 (594)
.| .++||+|||+|++|+||+++++||.+|+|++ +|++|+|.+||++|.++|+|.+|+|++++++ ++++....
T Consensus 422 ~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 500 (559)
T PRK08315 422 AIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRP 500 (559)
T ss_pred cCCCCCCEEccceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCC
Confidence 88 8899999999999999999999999999996 8999999999999999999999999998774 23333221
Q ss_pred c--ccee--------eeEe------eeecCceeeecccccccccccc
Q 007672 562 K--VGIL--------EWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 562 ~--~~~~--------~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
. .+.. .++. +.....||+|++||+.|.++++
T Consensus 501 ~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~ 547 (559)
T PRK08315 501 GATLTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMRE 547 (559)
T ss_pred CCCCCHHHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeHHHHHH
Confidence 1 1111 1233 4445579999999999998875
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=506.59 Aligned_cols=458 Identities=19% Similarity=0.213 Sum_probs=345.7
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
+-+.+.|+++++++|+++|+++. .++.++++||+||.++++++|+.|.++ ++||+|+|+++|+++++++++||
T Consensus 2 ~~~~~~l~~~~~~~~~~~a~~~~-----~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~ 74 (525)
T PRK05851 2 NELAAALSDAMTASGRDLVVLDR-----ESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGA 74 (525)
T ss_pred chHHHHHHHHhcCCCCceEEeCC-----CCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHH
Confidence 44899999999999999999854 334578999999999999999999988 89999999999999999999999
Q ss_pred HhcCCEEeecCCC--------CChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhC
Q 007672 122 NALSLICVPLYDT--------LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193 (594)
Q Consensus 122 ~~~G~~~v~i~~~--------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 193 (594)
+++|++++ +++. ...+++.+++.+++++++|++......+.... .. +.+.+.
T Consensus 75 ~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~----~~~~~~----------- 134 (525)
T PRK05851 75 WLAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVD----SS----VTVHDL----------- 134 (525)
T ss_pred HHcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhh----cc----cccccc-----------
Confidence 99999865 3332 12345567789999999999876554332111 00 001100
Q ss_pred CcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCC-CCcEEEEe
Q 007672 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT-VDDVYLSF 272 (594)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 272 (594)
...... ..........++++++++|||||||.||+|+++|.++++.+......+ ++. .+|+++++
T Consensus 135 -------~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~ 200 (525)
T PRK05851 135 -------ATAAHT--NRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSW 200 (525)
T ss_pred -------cccccc--cccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEc
Confidence 000000 000011224678999999999999999999999999999888877666 677 88999999
Q ss_pred cChhHHHHHHHHHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 007672 273 LPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (594)
Q Consensus 273 ~pl~~~~~~~~~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (594)
+|++|.+++..++.++..|+++++.+. ++..+++.++++++|++..+|.++..+.+....
T Consensus 201 ~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~--------------- 265 (525)
T PRK05851 201 LPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARR--------------- 265 (525)
T ss_pred CCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcc---------------
Confidence 999999999878889999999998762 577899999999999886555555444321100
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHh---cCC---ceEeeecccCCC
Q 007672 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTETC 421 (594)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~---~~~---~i~~~yG~tE~~ 421 (594)
....+++ +||.+++||+++++++.+++.+. +|. .+++.||+||++
T Consensus 266 ---------------------~~~~~l~--------~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~ 316 (525)
T PRK05851 266 ---------------------VSDVDLG--------ALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAEST 316 (525)
T ss_pred ---------------------ccCCCHH--------HhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhc
Confidence 0011122 79999999999999999988764 354 499999999998
Q ss_pred CceeccCCCC--------------ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhh
Q 007672 422 GPTTVCFPDE--------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487 (594)
Q Consensus 422 ~~~~~~~~~~--------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~ 487 (594)
..+....+.. .....++|+|++|++++|+| +++. .+++.|+.|||+++|++++.||+++++.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~GY~~~~~~~- 393 (525)
T PRK05851 317 CAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGA-AGVAGREIGEIEIRGASMMSGYLGQAPID- 393 (525)
T ss_pred eEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCC-ccCCCCCeEEEEEecCchhhccccCCccC-
Confidence 7665432211 11236799999999999998 4443 33455689999999999999999998643
Q ss_pred hcccCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc-
Q 007672 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH- 560 (594)
Q Consensus 488 ~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~- 560 (594)
.+|||+|||+|+++ ||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++++++ .+++...
T Consensus 394 ---~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~ 468 (525)
T PRK05851 394 ---PDDWFPTGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEF 468 (525)
T ss_pred ---CCCceeccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEe
Confidence 47899999999996 8999999999999997 8999999999999999999999999988753 1222111
Q ss_pred ccccee---------------eeEe-eeecC--ceeeecccccccccccc
Q 007672 561 QKVGIL---------------EWSC-WFIPG--TLFTCSATKLYPLRAEE 592 (594)
Q Consensus 561 ~~~~~~---------------~~~~-~~~p~--~i~~~~~gk~~r~~~~~ 592 (594)
...+.. .+++ +.+.. .||+|++||++|+.+++
T Consensus 469 ~~~~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~ 518 (525)
T PRK05851 469 RGPDEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKR 518 (525)
T ss_pred cCcchHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcchHHHHHHHHH
Confidence 001110 1121 22222 79999999999999875
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-59 Score=502.89 Aligned_cols=475 Identities=19% Similarity=0.209 Sum_probs=374.9
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
+.++.++|.++++ ||++|+++. + +.+||.||.+++.++|++|.+.|+++|++|+++++|+++++++++|
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la 92 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA 92 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence 4689999998887 999999864 3 4799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH----HHHhcccccccccccEEEEecCCcHHHHHHHhhCCcc
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (594)
|+++|++++++.+.....++..+++.++++.++++.... ......+....+..+.++..++..
T Consensus 93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------- 159 (536)
T PRK10946 93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDG------------- 159 (536)
T ss_pred HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCC-------------
Confidence 999999888777767778899999999999999986421 111121222223344444433211
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChh
Q 007672 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (594)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 276 (594)
...+.+++..... ........++++++++|||||||.||+|++||+++...+......+ .+..++++++.+|++
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~ 233 (536)
T PRK10946 160 EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAA 233 (536)
T ss_pred CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCcc
Confidence 1223333332211 1122345678999999999999999999999999999988776665 688899999999999
Q ss_pred HHHHHHH--HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007672 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (594)
Q Consensus 277 ~~~~~~~--~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (594)
|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|.++..++.........
T Consensus 234 h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~----------------- 296 (536)
T PRK10946 234 HNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSR----------------- 296 (536)
T ss_pred ccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCcc-----------------
Confidence 9888753 5667899999988765 8899999999999999999999999987543111100
Q ss_pred HHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCcc
Q 007672 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~ 433 (594)
..+ +++|.+++||+++++++.+.+.+.+++++++.||+||++............
T Consensus 297 ------------------~~~--------~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~ 350 (536)
T PRK10946 297 ------------------AQL--------ASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDER 350 (536)
T ss_pred ------------------ccc--------cceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCcccc
Confidence 001 289999999999999999999888899999999999975443322222222
Q ss_pred ccCccccCc-cCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEE
Q 007672 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (594)
Q Consensus 434 ~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~ 511 (594)
...++|.|+ ++..++|+| +++. +++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++|+||++++
T Consensus 351 ~~~~~G~p~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~ 427 (536)
T PRK10946 351 IFTTQGRPMSPDDEVWVAD-ADGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITV 427 (536)
T ss_pred ccccCCcccCCCceEEEEC-CCCC--CCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEE
Confidence 347899998 799999999 6554 44466999999999999999999999999998 789999999999999999999
Q ss_pred EeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccccccee---------eeEe------
Q 007672 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGIL---------EWSC------ 570 (594)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~~---------~~~~------ 570 (594)
.||.+|+|++ +|++|+|.+||++|.++|+|.+++|++.++. ++++......... .++.
T Consensus 428 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~l~~~~~~~~l~~~~~P~~ 506 (536)
T PRK10946 428 VGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPLKAVQLRRFLREQGIAEFKLPDR 506 (536)
T ss_pred eccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCCCHHHHHHHHHhCCccccccCcE
Confidence 9999999995 8999999999999999999999999998875 3444332211111 1333
Q ss_pred eeecCceeeecccccccccccc
Q 007672 571 WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 571 ~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+.....+|+|++||+.|+.+++
T Consensus 507 ~~~~~~iP~t~~GKv~r~~L~~ 528 (536)
T PRK10946 507 VECVDSLPLTAVGKVDKKQLRQ 528 (536)
T ss_pred EEEeccCCCCCCCcccHHHHHH
Confidence 4444678999999999998865
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=498.21 Aligned_cols=461 Identities=19% Similarity=0.221 Sum_probs=361.4
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
...++.++|.+++. ++++|+++. + +++||.||.+++.++|++|+++ |++++++|+++++|++++++++
T Consensus 3 ~~~~~~~~l~~~a~--~~~~a~~~~---~------~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~ 71 (529)
T PRK07867 3 SAPTVAELLLPLAE--DDDRGLYFE---D------SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL 71 (529)
T ss_pred ccccHHHHHHHhcc--cCCceEEEC---C------cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence 34678999988875 789999864 3 5899999999999999999997 8999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+||+++|++++|+++..+.+++.+++++++++++|+++.....+.... ... .++..+..
T Consensus 72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~~---------------- 130 (529)
T PRK07867 72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDSP---------------- 130 (529)
T ss_pred HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEeccc----------------
Confidence 999999999999999999999999999999999999987665432211 111 22222211
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
.|.+++..............++++++++|||||||.||+|+++|+++......+...+ ++..+|++++.+|++|.
T Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~ 205 (529)
T PRK07867 131 AWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHS 205 (529)
T ss_pred cHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHH
Confidence 2333333221111222345678999999999999999999999999998888776666 67889999999999999
Q ss_pred HHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 279 ~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+.+..++.......
T Consensus 206 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~---------------------- 263 (529)
T PRK07867 206 NAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPD---------------------- 263 (529)
T ss_pred HHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCccc----------------------
Confidence 99875 5567889999988766 89999999999999999999999887754211000
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccC
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG 436 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~ 436 (594)
. ..+++| +++||+.+++.+ ..+.+.+|+.+++.||+||++........ ...+
T Consensus 264 -----------~------------~~~~lr-~~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~~ 315 (529)
T PRK07867 264 -----------D------------ADNPLR-IVYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTPD---TPPG 315 (529)
T ss_pred -----------c------------cccceE-EEecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCCC---CCCC
Confidence 0 002677 456888887765 55666679999999999999876543321 1236
Q ss_pred ccccCccCceEEeeecCCCCCCCCCCCC------------CceEEE-ccCCcccccCCCchhhhhcccCCccccCceEEE
Q 007672 437 TAGPVSVYSELRLEEVPEMGYSPLDDPP------------CGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503 (594)
Q Consensus 437 ~~G~~~~~~~~~i~d~~~~~~~~~~~~~------------~Gei~v-~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~ 503 (594)
++|.|+++ +++++.+.+..++. ++ .|||++ +|++++.||+++++.+...|.+|||+|||+|++
T Consensus 316 ~~g~~~~~--~~i~~~~~~~~~~~--g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~ 391 (529)
T PRK07867 316 ALGPLPPG--VAIVDPDTGTECPP--AEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYR 391 (529)
T ss_pred CcCCCCCC--EEEEECCCCCCCCC--CccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEE
Confidence 88999999 67777333443433 34 899999 999999999999999998899999999999999
Q ss_pred cCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccc--cccccee---------
Q 007672 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRR--HQKVGIL--------- 566 (594)
Q Consensus 504 ~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~--~~~~~~~--------- 566 (594)
++||++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|+|++++ ++++.. +...+..
T Consensus 392 ~~~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~ 470 (529)
T PRK07867 392 DADGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQ 470 (529)
T ss_pred eCCCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCCHHHHHHHHHhh
Confidence 999999999999999997 8999999999999999999999999999874 222221 1111110
Q ss_pred -eeEe------eeecCceeeecccccccccccc
Q 007672 567 -EWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 567 -~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.+.. +...+.||+|++||+.|+++++
T Consensus 471 ~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~ 503 (529)
T PRK07867 471 PDLGPKQWPSYVRVCAELPRTATFKVLKRQLSA 503 (529)
T ss_pred ccCCcccCCeEEEEeeccCCCCCcceeHHHHHH
Confidence 1222 4555778999999999999875
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-58 Score=496.62 Aligned_cols=471 Identities=23% Similarity=0.290 Sum_probs=376.5
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
.++|.++|..++ .+|+++|+... ++ +.+||.||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la 72 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLA 72 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 367999999999 99999999764 43 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|+++..+.+++..+++.++++++++++.....+..... . .....++.++.... ..+
T Consensus 73 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~-------------~~~ 137 (504)
T PRK07514 73 TLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAA-A-AGAPHVETLDADGT-------------GSL 137 (504)
T ss_pred HHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhh-c-cCCceEEEecCCCc-------------ccH
Confidence 99999999999999999999999999999999999876654422211 1 12222333332211 011
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
.+..... ...........+++++++|||||||.||+|.++|+++...+......+ ++..+|++++.+|++|..+
T Consensus 138 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 211 (504)
T PRK07514 138 LEAAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHG 211 (504)
T ss_pred HHhhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHH
Confidence 1111111 111122345688999999999999999999999999999887766655 6788999999999999999
Q ss_pred HHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007672 281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (594)
Q Consensus 281 ~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (594)
+.. .+.++..|+++++.+. ++..+++.+ .++|.+.++|.++..++....
T Consensus 212 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~--------------------------- 262 (504)
T PRK07514 212 LFVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR--------------------------- 262 (504)
T ss_pred HHHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC---------------------------
Confidence 875 6678999999998876 899999998 479999999999988764211
Q ss_pred ccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCcc
Q 007672 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438 (594)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~ 438 (594)
....++ +++|.+++||+++++++.+.+.+.++.++++.||+||++......... .....++
T Consensus 263 ----------~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~ 323 (504)
T PRK07514 263 ----------LTREAA--------AHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDG-ERRAGTV 323 (504)
T ss_pred ----------CCcccc--------cceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccc-cccCccc
Confidence 001112 289999999999999999999998899999999999998765443222 2233789
Q ss_pred ccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEEEeccCc
Q 007672 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKN 517 (594)
Q Consensus 439 G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~GR~~d 517 (594)
|.|+++++++|+|.+++ .+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++||++++.||.+|
T Consensus 324 G~~~~~~~v~i~d~~~~--~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~ 401 (504)
T PRK07514 324 GFPLPGVSLRVTDPETG--AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKD 401 (504)
T ss_pred ccCCCCcEEEEEECCCC--CCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccc
Confidence 99999999999993333 345566899999999999999999999999988 689999999999999999999999999
Q ss_pred eeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccccc--cee--------ee------EeeeecC
Q 007672 518 LIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKV--GIL--------EW------SCWFIPG 575 (594)
Q Consensus 518 ~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~--~~~--------~~------~~~~~p~ 575 (594)
+|++ +|++|+|.+||++|.++++|.+++|++++++ +++++..... ... .+ ..+.+..
T Consensus 402 ~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~ 480 (504)
T PRK07514 402 LIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAALKGRLARFKQPKRVFFVD 480 (504)
T ss_pred eEEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHHHHHHHHhhcccCCCCcEEEEec
Confidence 9996 8999999999999999999999999998773 3333322111 111 11 2255567
Q ss_pred ceeeecccccccccccc
Q 007672 576 TLFTCSATKLYPLRAEE 592 (594)
Q Consensus 576 ~i~~~~~gk~~r~~~~~ 592 (594)
.+|+|++||+.|+++++
T Consensus 481 ~~p~t~~gK~~r~~l~~ 497 (504)
T PRK07514 481 ELPRNTMGKVQKNLLRE 497 (504)
T ss_pred cCCCCCCcceeHHHHHH
Confidence 79999999999998864
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=503.21 Aligned_cols=494 Identities=21% Similarity=0.263 Sum_probs=378.3
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
...+++.++|..+++++|+++|+++. + +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus 20 ~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~ 90 (557)
T PRK07059 20 SQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAI 90 (557)
T ss_pred CCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence 34578999999999999999999875 4 47999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHH-HH---------
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ-KE--------- 188 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~--------- 188 (594)
+||+++|++++|++|..+.+++.++++.++++++|+++.....+..... . .....++......... ..
T Consensus 91 la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (557)
T PRK07059 91 AAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLA-K-TAVKHVVVASMGDLLGFKGHIVNFVVRR 168 (557)
T ss_pred HHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhc-c-cCCceeEEeccccccccccccccccccc
Confidence 9999999999999999999999999999999999998765443322211 1 1222332221100000 00
Q ss_pred HH----hhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccC-C-
Q 007672 189 MA----VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED-K- 262 (594)
Q Consensus 189 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~-~- 262 (594)
.. .........+++++..............++++++++|||||||.||+|+++|.+++..+......+..... .
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~ 248 (557)
T PRK07059 169 VKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKP 248 (557)
T ss_pred ccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccC
Confidence 00 00001223455554433222222344578899999999999999999999999998776543332211000 1
Q ss_pred CCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhch
Q 007672 263 MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339 (594)
Q Consensus 263 ~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 339 (594)
......+++.+|++|.+++.. .+.++..|++.++.+. ++..+++.++++++|.+.++|.++..+.....
T Consensus 249 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~-------- 320 (557)
T PRK07059 249 RPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD-------- 320 (557)
T ss_pred CCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC--------
Confidence 112457888999999988764 5567778888777654 88999999999999999999999998864211
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccC
Q 007672 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE 419 (594)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE 419 (594)
....+++ ++|.++.||+++++.+.+.+.+.+++++++.||+||
T Consensus 321 -----------------------------~~~~~~~--------~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE 363 (557)
T PRK07059 321 -----------------------------FDKLDFS--------KLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSE 363 (557)
T ss_pred -----------------------------cCcCCch--------hheEEEeccccCCHHHHHHHHHHhCCCeeecccccc
Confidence 1111222 789999999999999999998888999999999999
Q ss_pred CCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccC
Q 007672 420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498 (594)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TG 498 (594)
++.+++..........+++|.|+++++++|+| +++.. ++.|+.|||+++|+.++.||+++++.+.+.| .+|||+||
T Consensus 364 ~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~--~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TG 440 (557)
T PRK07059 364 TSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGND--LPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTG 440 (557)
T ss_pred ccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCCC--CCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecC
Confidence 99876655433333347899999999999999 65544 4456899999999999999999999998888 78999999
Q ss_pred ceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc-cce------
Q 007672 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK-VGI------ 565 (594)
Q Consensus 499 Dlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~-~~~------ 565 (594)
|+|++++||++++.||.+|+|++ +|++|+|.+||++|.++|+|.+++|+++++. ++++..... ...
T Consensus 441 Dl~~~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l~~~ 519 (557)
T PRK07059 441 DVGVMDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPALTEEDVKAF 519 (557)
T ss_pred cEEEEcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999996 7999999999999999999999999998764 333332211 111
Q ss_pred --eeeEe------eeecCceeeecccccccccccc
Q 007672 566 --LEWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 566 --~~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
..+.. +.....+|+|++||++|+.+++
T Consensus 520 ~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~ 554 (557)
T PRK07059 520 CKERLTNYKRPKFVEFRTELPKTNVGKILRRELRD 554 (557)
T ss_pred HHHhcccccCCcEEEEeccCCCCcccceeHHHHHh
Confidence 11222 4455679999999999998875
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-59 Score=547.50 Aligned_cols=485 Identities=22% Similarity=0.256 Sum_probs=382.1
Q ss_pred CCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 007672 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (594)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~ 117 (594)
++..+++.+.+.++++++|+++|+++. ++ +++||+||.++++++|+.|++ ++++||+|+++++|+++++++
T Consensus 611 ~~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~ 681 (1146)
T PRK08633 611 KEALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALA 681 (1146)
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHH
Confidence 356688999999999999999999853 22 479999999999999999987 589999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccc-cccccccEEEEecCCcHHHHHHHhhCCcc
Q 007672 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-RSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (594)
Q Consensus 118 ~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (594)
++||+++|++++|+++..+.+++.+++++++++.+++++.....+..... ........++..++..... ..
T Consensus 682 ~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 753 (1146)
T PRK08633 682 NLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKI--------SK 753 (1146)
T ss_pred HHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhcccc--------ch
Confidence 99999999999999999999999999999999999999876655432110 0112233444443321100 00
Q ss_pred eeeHHHHHhccc-cc----ccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEE
Q 007672 197 PYSWDEFLHLGK-VN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271 (594)
Q Consensus 197 ~~~~~~~~~~~~-~~----~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (594)
...+.+...... .. ........++++++++|||||||.||+|.+||+++...+......+ +...+|++++
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~ 828 (1146)
T PRK08633 754 VDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILS 828 (1146)
T ss_pred hHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence 001111111100 00 0001345689999999999999999999999999999888776666 6788999999
Q ss_pred ecChhHHHHHHH-HHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 007672 272 FLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348 (594)
Q Consensus 272 ~~pl~~~~~~~~-~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (594)
.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|++++.+.+....
T Consensus 829 ~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------- 892 (1146)
T PRK08633 829 SLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKL---------------- 892 (1146)
T ss_pred cCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhcccc----------------
Confidence 999999999876 6778999999988764 899999999999999999999999987642110
Q ss_pred HHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccC
Q 007672 349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428 (594)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~ 428 (594)
+..++ +++|.+++||+++++++.+.+.+.+|+++++.||+||++++++...
T Consensus 893 ---------------------~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~ 943 (1146)
T PRK08633 893 ---------------------HPLMF--------ASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNL 943 (1146)
T ss_pred ---------------------CcccC--------CCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEec
Confidence 11112 2899999999999999999999988999999999999988766543
Q ss_pred CCC---------ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC----Ccc
Q 007672 429 PDE---------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWF 495 (594)
Q Consensus 429 ~~~---------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~----g~~ 495 (594)
++. ....+++|+|+||++++|+|.+++. +++.|+.|||+++|++++.||+++++.+.+.+.+ |||
T Consensus 944 ~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~ 1021 (1146)
T PRK08633 944 PDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFE--ELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWY 1021 (1146)
T ss_pred CcccccccccccCCCCCCccccCCCCEEEEEcCCCCc--cCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeE
Confidence 321 1234789999999999999933343 4456699999999999999999999999988866 999
Q ss_pred ccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCC--CccceEEeecCCc------hhhccccc------
Q 007672 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP--IIEDPQVNVSCSS------CAMRRRHQ------ 561 (594)
Q Consensus 496 ~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p--~V~~~~V~g~~~~------~~~~~~~~------ 561 (594)
+|||+|++|+||++++.||.||+|++ +|++|+|.|||++|.+|| .+.+|+|++++|+ +++++...
T Consensus 1022 ~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~l 1100 (1146)
T PRK08633 1022 VTGDKGHLDEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAEDVEEL 1100 (1146)
T ss_pred ECCCEEEEcCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCccCHHHH
Confidence 99999999999999999999999996 899999999999999999 5668999998885 22232110
Q ss_pred --ccceeeeEe------eeecCceeeecccccccccccc
Q 007672 562 --KVGILEWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 562 --~~~~~~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.+....++. +...+.+|+|++||+.|+++|+
T Consensus 1101 ~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~ 1139 (1146)
T PRK08633 1101 KRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKE 1139 (1146)
T ss_pred HHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHH
Confidence 011112333 4445679999999999999876
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=499.69 Aligned_cols=474 Identities=22% Similarity=0.218 Sum_probs=378.0
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..|+.++|.++++++|+++|+++. + +.+||.||.+++.++++.|.+.|+++|++|+++++|+++++++++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la 81 (524)
T PRK06188 11 GATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGA 81 (524)
T ss_pred CccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 458999999999999999999865 3 4799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchh-HHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceee
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (594)
|+++|++++|++|..+.+++.++++.++++.+++++.. ...... .......+..++.+....... .
T Consensus 82 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~ 148 (524)
T PRK06188 82 AQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALA-LLARVPSLKHVLTLGPVPDGV------------D 148 (524)
T ss_pred HHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHH-HhhhcCCceEEEEeCCccchh------------h
Confidence 99999999999999999999999999999999998763 222211 111223344455444322100 0
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHH
Q 007672 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (594)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 279 (594)
+.+..... ..........++++++++|||||||.||+|.++|.++...+......+ ++..++++++.+|++|.+
T Consensus 149 ~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~~ 222 (524)
T PRK06188 149 LLAAAAKF-GPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSHAG 222 (524)
T ss_pred HHHhhhcc-CcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchhhh
Confidence 00001000 001111122456699999999999999999999999999888776665 778899999999999988
Q ss_pred HHHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007672 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (594)
Q Consensus 280 ~~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (594)
++. .+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.....
T Consensus 223 g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~------------------------- 276 (524)
T PRK06188 223 GAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR------------------------- 276 (524)
T ss_pred hHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc-------------------------
Confidence 864 4667889999999877 8999999999999999999999999886532111
Q ss_pred ccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC-----cc
Q 007672 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----MC 433 (594)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-----~~ 433 (594)
..++ +++|.+++||++++++....+.+.++..+++.||+||++..+....... ..
T Consensus 277 ------------~~~l--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~ 336 (524)
T PRK06188 277 ------------TRDL--------SSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPK 336 (524)
T ss_pred ------------CCCC--------cceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccc
Confidence 1112 2899999999999999888888888999999999999977665543322 22
Q ss_pred ccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEe
Q 007672 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513 (594)
Q Consensus 434 ~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~G 513 (594)
...++|.|++++.++|+| +++.. ++.|+.|||+++|+.++.||++++..+...|.+|||+|||+|++++||++++.|
T Consensus 337 ~~~~~G~p~~g~~v~i~~-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~G 413 (524)
T PRK06188 337 RLTSCGRPTPGLRVALLD-EDGRE--VAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVD 413 (524)
T ss_pred cCCccccccCCcEEEEEc-CCCCC--CCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCCccEEEEe
Confidence 347899999999999999 66554 445689999999999999999999999988999999999999999999999999
Q ss_pred ccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--ccceee--------e------Eee
Q 007672 514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--KVGILE--------W------SCW 571 (594)
Q Consensus 514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~~~~~~--------~------~~~ 571 (594)
|.+|+|++ +|++|+|.+||++|.++|+|.+++|++.+++ ++++.... .....+ + ..+
T Consensus 414 R~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i 492 (524)
T PRK06188 414 RKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPKQV 492 (524)
T ss_pred ccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEE
Confidence 99999996 8999999999999999999999999998764 23332211 111001 1 236
Q ss_pred eecCceeeecccccccccccc
Q 007672 572 FIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 572 ~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.....+|+|++||+.|+++++
T Consensus 493 ~~v~~~P~t~~gKi~r~~L~~ 513 (524)
T PRK06188 493 DFVDSLPLTALGKPDKKALRA 513 (524)
T ss_pred EEecCCCCCccccccHHHHHH
Confidence 666789999999999998764
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-58 Score=496.90 Aligned_cols=492 Identities=23% Similarity=0.263 Sum_probs=375.6
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
...++.++|.++++.+|+++|+++. + +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus 19 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 89 (541)
T TIGR03205 19 ARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFF 89 (541)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4568999999999999999999864 3 479999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH--HHHhcccccccccccEEEEecCCcHHHHH---HHhhCC
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRLRVMVCFTSLTAEQKE---MAVQTG 194 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~ 194 (594)
||+++|++++|++|..+.+++.++++.++++++|+++... ....+.... ..+..+++.+........ ......
T Consensus 90 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (541)
T TIGR03205 90 GALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRLIVCEDDNWGKVGTPQAPIPAD 167 (541)
T ss_pred HHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEEEEecccccccccccccccCCC
Confidence 9999999999999999999999999999999999986321 111111110 112233333321100000 000111
Q ss_pred cceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhcc-ccCCCCCCcEEEEec
Q 007672 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ-FEDKMTVDDVYLSFL 273 (594)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 273 (594)
....++++++..... ........++++++++|||||||.||+|+++|+++....... ..+.. ........+++++.+
T Consensus 168 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 245 (541)
T TIGR03205 168 PRIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVL 245 (541)
T ss_pred cccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEec
Confidence 223456666543211 112234567899999999999999999999999988655422 11100 001223457899999
Q ss_pred ChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007672 274 PLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (594)
Q Consensus 274 pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (594)
|++|.+++.. .+.++..|+++++... ++..+++.|+++++|++.++|.++..|++...
T Consensus 246 p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------- 305 (541)
T TIGR03205 246 PLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS-------------------- 305 (541)
T ss_pred cHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc--------------------
Confidence 9999988876 5567889999888765 89999999999999999999999988754210
Q ss_pred HHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC
Q 007672 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431 (594)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~ 431 (594)
....+++ ++|.+++||+++++++.+++.+.+++.+++.||+||++..++......
T Consensus 306 -----------------~~~~~~~--------~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~ 360 (541)
T TIGR03205 306 -----------------LEKRDLS--------SLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEG 360 (541)
T ss_pred -----------------ccccCcc--------ccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCC
Confidence 0011122 799999999999999999998888999999999999998766654433
Q ss_pred ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEE
Q 007672 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI 511 (594)
Q Consensus 432 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~ 511 (594)
....+++|.|++++.++|++.+ +...+++.|+.|||+++|++++.||+++++.+.+.|.++||+|||++++++||++++
T Consensus 361 ~~~~~~~G~~~~~~~~~v~~~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i 439 (541)
T TIGR03205 361 PDKPGSIGLMLPGIELDVVSLD-DPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFL 439 (541)
T ss_pred CCCCCCcceeccCceeEEEecC-CCCccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcCCceEEE
Confidence 3334789999999999987633 222345566899999999999999999999999999899999999999999999999
Q ss_pred EeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc---ccee--------eeE-----
Q 007672 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK---VGIL--------EWS----- 569 (594)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~---~~~~--------~~~----- 569 (594)
.||.+|+|++ +|++|+|.+||++|.++|.|.+++|++++++ ++++..... .... .+.
T Consensus 440 ~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~P 518 (541)
T TIGR03205 440 VDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELP 518 (541)
T ss_pred EccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcCCHHHHHHHHHhhcccccCC
Confidence 9999999996 8999999999999999999999999998764 223322111 1111 122
Q ss_pred -eeeecCceeeeccccccccccc
Q 007672 570 -CWFIPGTLFTCSATKLYPLRAE 591 (594)
Q Consensus 570 -~~~~p~~i~~~~~gk~~r~~~~ 591 (594)
.+.+...||+|++||+.|+.+|
T Consensus 519 ~~i~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 519 VAVEFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred cEEEEeccCCCCcccceeHhhcC
Confidence 2455567999999999998875
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-58 Score=497.31 Aligned_cols=461 Identities=19% Similarity=0.185 Sum_probs=357.6
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCchhHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi-~~gd~V~i~~~n~~~~~~~~~A 120 (594)
.++.++|..++ .|+++|+++. + ..+||.||.++++++|..|.+.|+ ++||+|+++++|+++++++++|
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~---~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA 71 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYG---D------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA 71 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 57888888765 6999999864 3 479999999999999999999999 8999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|++|..+.+++.++++.++++++|+++.....+.... .+..+ ++.++.. .|
T Consensus 72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~-~i~~~~~----------------~~ 131 (540)
T PRK13388 72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGVR-VLDVDTP----------------AY 131 (540)
T ss_pred HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCce-EEEccch----------------hh
Confidence 9999999999999999999999999999999999877655442211 12222 2333221 12
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
.+++..... ..+.....++++++++|||||||.||+|.++|+++...+......+ ++..+|++++.+|++|..+
T Consensus 132 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 205 (540)
T PRK13388 132 AELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNA 205 (540)
T ss_pred hhhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcc
Confidence 233221111 1111235679999999999999999999999999998887766666 7889999999999999998
Q ss_pred HHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007672 281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (594)
Q Consensus 281 ~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (594)
+.. ++.++..|+++++.+. ++..+++.|+++++|++..+|..+..+.......
T Consensus 206 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~------------------------- 260 (540)
T PRK13388 206 VMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERP------------------------- 260 (540)
T ss_pred hHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCc-------------------------
Confidence 875 4457889999988765 8999999999999999999999988775321000
Q ss_pred ccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCcc
Q 007672 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438 (594)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~ 438 (594)
. . ...+++.+ + |+.++++....+.+.+++.+++.||+||++.++.... . ...+++
T Consensus 261 -----------~-~--------~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~--~~~~~v 315 (540)
T PRK13388 261 -----------D-D--------ADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP-G--TPPGSI 315 (540)
T ss_pred -----------c-c--------cccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCC-C--CCCCCC
Confidence 0 0 00156643 3 6667888888888888999999999999987665432 1 223789
Q ss_pred ccCccCceEE-----------eeecCCCCCCCCCCCCCceEEEc-cCCcccccCCCchhhhhcccCCccccCceEEEcCC
Q 007672 439 GPVSVYSELR-----------LEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN 506 (594)
Q Consensus 439 G~~~~~~~~~-----------i~d~~~~~~~~~~~~~~Gei~v~-g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~d 506 (594)
|.|++++++. ++| +++.. ..+.+..|||+++ |++++.||+++++.+.+.|.+|||+|||+|++|+|
T Consensus 316 G~p~~g~~i~~~~~~~~~~~~~~d-~~g~~-~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~d 393 (540)
T PRK13388 316 GRGAPGVAIYNPETLTECAVARFD-AHGAL-LNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDAD 393 (540)
T ss_pred CCCCCCcEEEcCCCCccccceecc-Ccccc-ccCCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCC
Confidence 9999997653 112 11111 1123468999998 99999999999999999998999999999999999
Q ss_pred CcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--ccce----------eee
Q 007672 507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--KVGI----------LEW 568 (594)
Q Consensus 507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~~~~----------~~~ 568 (594)
|++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++++++ ++++.... ..+. ..+
T Consensus 394 g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~l~~~~~l 472 (540)
T PRK13388 394 GWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDL 472 (540)
T ss_pred CcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCCHHHHHHHHHhhccC
Confidence 999999999999997 8999999999999999999999999998764 22222111 1110 013
Q ss_pred Eeee------ecCceeeecccccccccccc
Q 007672 569 SCWF------IPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 569 ~~~~------~p~~i~~~~~gk~~r~~~~~ 592 (594)
..++ ....||+|++||+.|+++++
T Consensus 473 ~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~ 502 (540)
T PRK13388 473 GTKAWPRYVRIAADLPSTATNKVLKRELIA 502 (540)
T ss_pred CcccCCcEEEEeccCCCCCcceeeHHhHHH
Confidence 3333 34678999999999999876
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-58 Score=497.40 Aligned_cols=484 Identities=21% Similarity=0.257 Sum_probs=375.7
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
.++.++|+++++++||+++++.. . .+..+++||.||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~ 84 (542)
T PRK06018 10 LLCHRIIDHAARIHGNREVVTRS---V--EGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGI 84 (542)
T ss_pred CCHHHHHHHHHHhCCCceEEEee---c--cCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHH
Confidence 58999999999999999999853 1 233578999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (594)
+++|++++|+++..+.+++.++++.++++.++++.+....+.+... ..+..+.++...+..... .........|.
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 159 (542)
T PRK06018 85 MGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIAD-KLPSVERYVVLTDAAHMP----QTTLKNAVAYE 159 (542)
T ss_pred HhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHh-hCCCccEEEEeccccccc----ccCccccccHH
Confidence 9999999999999999999999999999999999876655433222 223444555443321100 00011233566
Q ss_pred HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHH-HHH-hhhhhhhccccCCCCCCcEEEEecChhHHH
Q 007672 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA-TFV-SGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (594)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 279 (594)
+++..... .........+++++++|||||||.||+|++||++++ ... ......+ ++..+|+++...|++|.+
T Consensus 160 ~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~h~~ 233 (542)
T PRK06018 160 EWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPLFHAN 233 (542)
T ss_pred HHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCHHHHh
Confidence 66544321 222234567889999999999999999999999743 222 2222222 678889999999999999
Q ss_pred HHHHHHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 007672 280 DRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (594)
Q Consensus 280 ~~~~~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (594)
++...+.++..|+++++... ++..+++.++++++|++.++|+++..+++......
T Consensus 234 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------- 290 (542)
T PRK06018 234 SWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG----------------------- 290 (542)
T ss_pred hhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC-----------------------
Confidence 88777778899999988653 78899999999999999999999998875432111
Q ss_pred hccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC------
Q 007672 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE------ 431 (594)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~------ 431 (594)
.++ +++|.++++|+++++++.+.+++ +++++++.||+||++.+.+......
T Consensus 291 --------------~~~--------~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~ 347 (542)
T PRK06018 291 --------------LKL--------PHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLP 347 (542)
T ss_pred --------------CCc--------ccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCC
Confidence 011 28999999999999999999998 8999999999999997655432110
Q ss_pred ----ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCC
Q 007672 432 ----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPN 506 (594)
Q Consensus 432 ----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~d 506 (594)
.....++|.|.++++++|+| +++...+.+.+..|||+++|+.++.||+++. ...+ .+|||+|||+|++++|
T Consensus 348 ~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~~~~~ 423 (542)
T PRK06018 348 GDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAY 423 (542)
T ss_pred chhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEEEcCC
Confidence 01125789999999999999 7777666654568999999999999999842 2333 6899999999999999
Q ss_pred CcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc--ccccee--------eeE-
Q 007672 507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH--QKVGIL--------EWS- 569 (594)
Q Consensus 507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~--~~~~~~--------~~~- 569 (594)
|++++.||.+|+|++ +|++|+|.+||+++.+||+|.+|+|++.+++ .+++... ...... .+.
T Consensus 424 g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~ 502 (542)
T PRK06018 424 GYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAK 502 (542)
T ss_pred ccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCCHHHHHHHHHhhCcc
Confidence 999999999999995 8999999999999999999999999998764 2222221 111111 112
Q ss_pred -----eeeecCceeeecccccccccccc
Q 007672 570 -----CWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 570 -----~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.+.....||+|++||++|+++|+
T Consensus 503 ~~~P~~i~~v~~iP~t~~GKi~r~~L~~ 530 (542)
T PRK06018 503 WWMPDDVAFVDAIPHTATGKILKTALRE 530 (542)
T ss_pred ccCCcEEEEeccCCCCCcchhhHHHHHH
Confidence 25555679999999999998875
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-58 Score=492.75 Aligned_cols=450 Identities=22% Similarity=0.258 Sum_probs=357.1
Q ss_pred HHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEE
Q 007672 49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC 128 (594)
Q Consensus 49 ~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~ 128 (594)
+.+++.+||++|+.+. ... +.+||.||.+++.++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 2 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 74 (488)
T PRK09088 2 AFHARLQPQRLAAVDL---ALG----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY 74 (488)
T ss_pred chhhhhCCCceEEEec---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 4577889999998753 111 589999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhccc
Q 007672 129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK 208 (594)
Q Consensus 129 v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (594)
+|+++..+.+++.+++++++++++|+++....... . ...++++.....
T Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~---------------------~~~~~~~~~~~~ 122 (488)
T PRK09088 75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------D---------------------VEDLAAFIASAD 122 (488)
T ss_pred EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------c---------------------ccchhhhhhhcc
Confidence 99999999999999999999999999865432100 0 001111111110
Q ss_pred c-cccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHH-HHH
Q 007672 209 V-NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEY 286 (594)
Q Consensus 209 ~-~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~l~ 286 (594)
. ..........+++++++|||||||.||+|.++|++++..+..+.... ....++++++.+|++|.+++.. +..
T Consensus 123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~ 197 (488)
T PRK09088 123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP 197 (488)
T ss_pred ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence 0 01111234568899999999999999999999999988777665554 5778999999999999999876 556
Q ss_pred hhhcCcEEEEecC-ChHHHHHHHh--hhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCC
Q 007672 287 FFRRGASVGYYHG-DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 363 (594)
Q Consensus 287 ~l~~G~~~~~~~~-~~~~~~~~i~--~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (594)
++..|+++++.+. ++..++..+. ++++|+++++|.+++.+.....
T Consensus 198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~-------------------------------- 245 (488)
T PRK09088 198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG-------------------------------- 245 (488)
T ss_pred HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC--------------------------------
Confidence 7888999988766 7888888886 4899999999999988754210
Q ss_pred CcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCC--CccccCccccC
Q 007672 364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMVGTAGPV 441 (594)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~--~~~~~~~~G~~ 441 (594)
.+..++ +++|.+++||++++.+..+.+.+. ++++++.||+||++.+....... .....+++|.|
T Consensus 246 -----~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~ 311 (488)
T PRK09088 246 -----FDAAAL--------RHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIP 311 (488)
T ss_pred -----cCcccc--------ccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccC
Confidence 000112 289999999999999888877765 89999999999998765432211 12234789999
Q ss_pred ccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEEEeccCceeE
Q 007672 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520 (594)
Q Consensus 442 ~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~ 520 (594)
.++++++|+| +++.. ++.|+.|||+++|++++.||+++++.+++.+ .+|||+|||+|++|+||++++.||.+|+|+
T Consensus 312 ~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~ 388 (488)
T PRK09088 312 TPTVQTRVVD-DQGND--CPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFI 388 (488)
T ss_pred CCCcEEEEEC-CCCCC--CcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEE
Confidence 9999999998 65554 4456899999999999999999999998888 689999999999999999999999999999
Q ss_pred cCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccccc--ceee--------e------EeeeecCcee
Q 007672 521 ISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKV--GILE--------W------SCWFIPGTLF 578 (594)
Q Consensus 521 ~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~--~~~~--------~------~~~~~p~~i~ 578 (594)
+ +|++|+|.+||++|.++|.|.+++|++++++ ++++...... ...+ + ..+.....||
T Consensus 389 ~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP 467 (488)
T PRK09088 389 S-GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKHLRLVDALP 467 (488)
T ss_pred e-CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCCEEEEcccCC
Confidence 6 8999999999999999999999999998774 2333322111 1111 1 2255667899
Q ss_pred eecccccccccccc
Q 007672 579 TCSATKLYPLRAEE 592 (594)
Q Consensus 579 ~~~~gk~~r~~~~~ 592 (594)
+|++||+.|+++++
T Consensus 468 ~t~~gKi~r~~l~~ 481 (488)
T PRK09088 468 RTASGKLQKARLRD 481 (488)
T ss_pred CCCCCceeHHHHHH
Confidence 99999999998865
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-59 Score=590.06 Aligned_cols=463 Identities=17% Similarity=0.219 Sum_probs=382.1
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
+...++.++|.++++++||++|+++. + +++||+||.++++++|+.|+++|+++|++|+|+++|++++++++
T Consensus 3092 ~~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~ 3162 (3956)
T PRK12467 3092 PSERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVAL 3162 (3956)
T ss_pred CccccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHH
Confidence 44579999999999999999999986 4 47999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
|||+++|++++|++|.++.+++.+++++++++++|++......+... ....++.++....
T Consensus 3163 lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~------~~~~~~~~~~~~~-------------- 3222 (3956)
T PRK12467 3163 LAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP------AGDTALTLDRLDL-------------- 3222 (3956)
T ss_pred HHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc------cCCceeeecchhh--------------
Confidence 99999999999999999999999999999999999988765433110 1111222222100
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
.............++++++++|||||||.||||+++|+++.+.+......+ +++++|+++++.|++|.
T Consensus 3223 -------~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 3290 (3956)
T PRK12467 3223 -------NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSFD 3290 (3956)
T ss_pred -------cccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccHh
Confidence 000111122345689999999999999999999999999999999887776 78999999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (594)
.+...++.++..|+++++.+. ++..+++.|+++++|++.++|++++.+.+.... .
T Consensus 3291 ~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~--~-------------------- 3348 (3956)
T PRK12467 3291 GAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG--A-------------------- 3348 (3956)
T ss_pred HHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc--c--------------------
Confidence 998888999999999999864 789999999999999999999999988642110 0
Q ss_pred HhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCCc--
Q 007672 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM-- 432 (594)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~-- 432 (594)
++ ++||.+++||+++++++.+.+.+.+ ++.+++.||+||++..++.......
T Consensus 3349 -----------------~~--------~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 3403 (3956)
T PRK12467 3349 -----------------DC--------ASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAV 3403 (3956)
T ss_pred -----------------CC--------CCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccc
Confidence 11 2899999999999999999998776 6789999999999987665432211
Q ss_pred --cccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCC-------ccccCceEE
Q 007672 433 --CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDG-------WFHTGDIGQ 502 (594)
Q Consensus 433 --~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g-------~~~TGDlg~ 502 (594)
....++|+|++|++++|+| +++.. ++.|+.|||+|+|+.+++||+++++.|+++| .++ ||+|||+|+
T Consensus 3404 ~~~~~~~iG~p~~~~~~~v~d-~~~~~--vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~ 3480 (3956)
T PRK12467 3404 CEAPYAPIGRPVAGRSIYVLD-GQLNP--VPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLAR 3480 (3956)
T ss_pred cCCCCCCCccccCCCEEEEEC-CCCCC--CCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhhe
Confidence 1226899999999999999 66554 4556999999999999999999999999999 444 699999999
Q ss_pred EcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCC-----chhhcccccc--cce--------ee
Q 007672 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCS-----SCAMRRRHQK--VGI--------LE 567 (594)
Q Consensus 503 ~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~-----~~~~~~~~~~--~~~--------~~ 567 (594)
+++||+|+++||.||+||+ +|++|+|.|||++|.++|+|.+|+|++..+ .++++..... ... ..
T Consensus 3481 ~~~dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~ 3559 (3956)
T PRK12467 3481 YRADGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQGDWRETLRDHLAAS 3559 (3956)
T ss_pred ecCCCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCCcccHHHHHHHHhcc
Confidence 9999999999999999998 799999999999999999999999998753 2455544321 111 13
Q ss_pred eEeeeec------CceeeeccccccccccccC
Q 007672 568 WSCWFIP------GTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 568 ~~~~~~p------~~i~~~~~gk~~r~~~~~~ 593 (594)
++.|++| +.+|+|++||+.|+.++++
T Consensus 3560 Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~ 3591 (3956)
T PRK12467 3560 LPDYMVPAQLLVLAAMPLGPNGKVDRKALPDP 3591 (3956)
T ss_pred CChhhCCCeeeeeccCCCCCCCccchhhcCCC
Confidence 3555555 4589999999999999874
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=497.59 Aligned_cols=491 Identities=22% Similarity=0.285 Sum_probs=375.6
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~-~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
..++.++|.++++.+|+++|+++. + +.+||.||.+++.++|+.|. +.|+++||+|+++++|+++++++++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 94 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSF---G------KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF 94 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEEC---C------ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 357999999999999999999864 3 57999999999999999997 6899999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcH---H-H-------HH
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA---E-Q-------KE 188 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~-------~~ 188 (594)
||+++|++++|++|..+.+++.+++++++++++++++.....+...... .....++..+.... . . ..
T Consensus 95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (560)
T PRK08751 95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIAD--TPVKQVITTGLGDMLGFPKAALVNFVVKY 172 (560)
T ss_pred HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhC--CCccEEEEechhhhcccccchhhhhhhhh
Confidence 9999999999999999999999999999999999988765544332211 11223332210000 0 0 00
Q ss_pred HH----hhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCC
Q 007672 189 MA----VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264 (594)
Q Consensus 189 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~ 264 (594)
.. .........+.+.................+++++++|||||||.||+|.++|.++...+......+... ..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~-~~~~ 251 (560)
T PRK08751 173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGT-GKLE 251 (560)
T ss_pred hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccc-cccC
Confidence 00 000011233444443322222223345678999999999999999999999999988776654433110 0123
Q ss_pred C-CcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchH
Q 007672 265 V-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340 (594)
Q Consensus 265 ~-~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~ 340 (594)
. .+++++.+|++|.+++.. .+.++..|+++++... ++..+++.++++++|++.++|.++..+.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---------- 321 (560)
T PRK08751 252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTP---------- 321 (560)
T ss_pred CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCc----------
Confidence 3 357788999999998764 4556667777666543 8899999999999999999999998876421
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCC
Q 007672 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420 (594)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~ 420 (594)
.....+++ +||.+++||+++++.+.+.+.+.+++.+++.||+||+
T Consensus 322 ---------------------------~~~~~~l~--------~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~ 366 (560)
T PRK08751 322 ---------------------------GFDQIDFS--------SLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTET 366 (560)
T ss_pred ---------------------------CcCCcchh--------hheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccC
Confidence 01112333 8999999999999999999999889999999999999
Q ss_pred CCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCc
Q 007672 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGD 499 (594)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGD 499 (594)
+..++..........+++|.|+++++++++| +++.. ++.++.|||+++|+.++.||+++++.+.+.| .+|||+|||
T Consensus 367 ~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD 443 (560)
T PRK08751 367 SPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTV--LAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGD 443 (560)
T ss_pred CCceecccccccccCCCcCccCCCceEEEEC-CCCCC--CCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccc
Confidence 8876655433333347899999999999999 66654 4456899999999999999999999998888 789999999
Q ss_pred eEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc-cccee------
Q 007672 500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ-KVGIL------ 566 (594)
Q Consensus 500 lg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~-~~~~~------ 566 (594)
+|++|+||++++.||.+|+|++ +|++|+|.+||++|.++|+|.+|+|+++++. ++++.... ..+..
T Consensus 444 ~~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l~~~~ 522 (560)
T PRK08751 444 IARMDEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPALTAEDVKAHA 522 (560)
T ss_pred eEEEcCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCCCCHHHHHHHH
Confidence 9999999999999999999997 7999999999999999999999999998764 22222211 11111
Q ss_pred --eeEe------eeecCceeeecccccccccccc
Q 007672 567 --EWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 567 --~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.+.. +.....||+|++||+.|+.+++
T Consensus 523 ~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~ 556 (560)
T PRK08751 523 RANLTGYKQPRIIEFRKELPKTNVGKILRRELRD 556 (560)
T ss_pred HHhhhhccCCeEEEEhhhCCCCccccccHHHHHH
Confidence 1222 4445668999999999999875
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-58 Score=498.70 Aligned_cols=491 Identities=24% Similarity=0.335 Sum_probs=367.6
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
.++.+.+..+++.+|+++|+++. + ..+||.||.++++++|..|.+.|+++||+|+++++|+++++++++||
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~ 90 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVHG---S------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV 90 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 46889999999999999999864 3 47999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhccccc------ccccccEEEEecCCcHHHHHHHhhCCc
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR------SAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~ 195 (594)
+++|++++|+++..+.+++.++++.++++.+|+++............ .......++.+++..............
T Consensus 91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (567)
T PLN02479 91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK 170 (567)
T ss_pred HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence 99999999999999999999999999999999998765443222110 001122333433221100000000112
Q ss_pred ceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecCh
Q 007672 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (594)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 275 (594)
+...|.+++...............+++++++|||||||.||+|++||.++..........+ ++..++++++.+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~ 245 (567)
T PLN02479 171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLPM 245 (567)
T ss_pred CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecch
Confidence 3345666665432111111122345678899999999999999999999876655443333 67788999999999
Q ss_pred hHHHHHHHHHH-hhhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 276 AHILDRVIEEY-FFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 276 ~~~~~~~~~l~-~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
+|..++...+. .+..|.++++...++..+++.++++++|++.++|.++..|.+.......
T Consensus 246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------- 306 (567)
T PLN02479 246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETI------------------- 306 (567)
T ss_pred hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccc-------------------
Confidence 99998765443 4666776666555999999999999999999999999988753211000
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccC--C---
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF--P--- 429 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~--~--- 429 (594)
.++ ++++.++++|+++++.+.+.+.+. +.++++.||+||+++.+.... +
T Consensus 307 -----------------~~~--------~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~ 360 (567)
T PLN02479 307 -----------------LPL--------PRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWD 360 (567)
T ss_pred -----------------ccc--------cceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceecccccc
Confidence 001 278999999999999999998875 899999999999965433221 0
Q ss_pred ----CC-ccccCccccCccCce-EEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEE
Q 007672 430 ----DE-MCMVGTAGPVSVYSE-LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503 (594)
Q Consensus 430 ----~~-~~~~~~~G~~~~~~~-~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~ 503 (594)
.. .....+.|.+.++.. ++|+|.+++..++.+.++.|||+++|++++.||+++++.+.+.|.+|||+|||+|++
T Consensus 361 ~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~ 440 (567)
T PLN02479 361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVK 440 (567)
T ss_pred ccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEE
Confidence 00 011135677888875 788873344444443346899999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccccc-------ce-----
Q 007672 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKV-------GI----- 565 (594)
Q Consensus 504 ~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~-------~~----- 565 (594)
|+||++++.||.+|+|++ +|++|+|.+||++|.+||.|.+|+|++.++. ++++...... ..
T Consensus 441 ~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 519 (567)
T PLN02479 441 HPDGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMK 519 (567)
T ss_pred cCCccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHH
Confidence 999999999999999996 8999999999999999999999999998764 3333321111 00
Q ss_pred ---eeeEeeee-----cCceeeecccccccccccc
Q 007672 566 ---LEWSCWFI-----PGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 566 ---~~~~~~~~-----p~~i~~~~~gk~~r~~~~~ 592 (594)
..++.|++ ...+|+|++||++|+.+++
T Consensus 520 ~~~~~l~~~~~P~~~~~~~iP~t~~gKv~r~~L~~ 554 (567)
T PLN02479 520 FCRERLPAYWVPKSVVFGPLPKTATGKIQKHVLRA 554 (567)
T ss_pred HHHhhcccccCCceEEeccCCCCCccCeeHHHHHH
Confidence 11122333 3459999999999998864
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-58 Score=503.87 Aligned_cols=477 Identities=18% Similarity=0.226 Sum_probs=362.7
Q ss_pred CCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 007672 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (594)
Q Consensus 37 ~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~ 116 (594)
.+....++.++|.++++++|+++|+++. + +.+||.||.++++++|..|.+.|+++||+|+|+++|++++++
T Consensus 32 ~~~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~ 102 (600)
T PRK08279 32 TPDSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLA 102 (600)
T ss_pred CCCCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHH
Confidence 3355678999999999999999999875 4 479999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcc
Q 007672 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (594)
Q Consensus 117 ~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (594)
+++||+++|++++++++..+.+++.++++.++++++|++.+....+..... .......++..++.... .
T Consensus 103 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~ 171 (600)
T PRK08279 103 AWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARA-DLARPPRLWVAGGDTLD----------D 171 (600)
T ss_pred HHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhh-hhcccceEEEecCcccc----------c
Confidence 999999999999999999999999999999999999999876655432221 11122233333221100 0
Q ss_pred eeeHHHHHhccccc----ccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEe
Q 007672 197 PYSWDEFLHLGKVN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272 (594)
Q Consensus 197 ~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (594)
...|.++....... .........+++++++|||||||.||+|++||+++++.+..+...+ .+.++|++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~~ 246 (600)
T PRK08279 172 PEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCC 246 (600)
T ss_pred cccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEEe
Confidence 11233333211111 1122334678999999999999999999999999999998877766 78899999999
Q ss_pred cChhHHHHHHHH-HHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 007672 273 LPLAHILDRVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (594)
Q Consensus 273 ~pl~~~~~~~~~-l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (594)
+|++|.+++... +.++..|+++++.+. ++..+++.++++++|++.++|++++.++........
T Consensus 247 ~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~--------------- 311 (600)
T PRK08279 247 LPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTD--------------- 311 (600)
T ss_pred cCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccc---------------
Confidence 999999998764 456788888888766 899999999999999999999999887642110000
Q ss_pred HHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCC-ceEeeecccCCCCceeccCC
Q 007672 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFP 429 (594)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~-~i~~~yG~tE~~~~~~~~~~ 429 (594)
...++|.+ +|+.+++++.+.+.+.++. .+++.||+||++...... .
T Consensus 312 ------------------------------~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-~ 358 (600)
T PRK08279 312 ------------------------------RDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV-F 358 (600)
T ss_pred ------------------------------cCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc-C
Confidence 00266654 4778999999999988876 599999999987643321 1
Q ss_pred CCccccCccccCcc----CceE---------EeeecCCCCCCCCCCCCCceEE--EccCCcccccCCCchhhhhcc----
Q 007672 430 DEMCMVGTAGPVSV----YSEL---------RLEEVPEMGYSPLDDPPCGEVC--VRGKTLFSGYYKNPDLTRESI---- 490 (594)
Q Consensus 430 ~~~~~~~~~G~~~~----~~~~---------~i~d~~~~~~~~~~~~~~Gei~--v~g~~v~~gY~~~~~~~~~~~---- 490 (594)
...+++|.+.+ +..+ .+.+ .++....++.|+.|||+ +.|++++.|| ++++.+.+.|
T Consensus 359 ---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~ 433 (600)
T PRK08279 359 ---NFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDV 433 (600)
T ss_pred ---CCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcc
Confidence 12256776555 2222 2223 23333345667899998 7899999999 8888887765
Q ss_pred ---cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc-------hhhcccc
Q 007672 491 ---IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS-------CAMRRRH 560 (594)
Q Consensus 491 ---~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~-------~~~~~~~ 560 (594)
.++||+|||+|++|+||+|++.||.||+|++ +|++|+|.|||++|.+||+|.+|+|+|++++ ++++...
T Consensus 434 ~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~ 512 (600)
T PRK08279 434 FKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLA 512 (600)
T ss_pred cCCCCceEeecceEEEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEec
Confidence 2579999999999999999999999999997 7999999999999999999999999987642 2222211
Q ss_pred --ccccee--------eeEeeee------cCceeeecccccccccccc
Q 007672 561 --QKVGIL--------EWSCWFI------PGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 561 --~~~~~~--------~~~~~~~------p~~i~~~~~gk~~r~~~~~ 592 (594)
...... .++.|++ ...+|+|.+||+.|+++++
T Consensus 513 ~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 560 (600)
T PRK08279 513 DGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRK 560 (600)
T ss_pred CCccCCHHHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHHHhh
Confidence 111111 2233444 4568999999999999875
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-57 Score=489.02 Aligned_cols=475 Identities=21% Similarity=0.204 Sum_probs=378.5
Q ss_pred cCcHHHHHHHH-HHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 41 LNTAWDIFSMS-VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 41 ~~tl~~~l~~~-a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
.++..++|.++ ++.+||++|++.. + +.+||.||.++++++|+.|.+.|+++|++|+++++|+.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~ 73 (508)
T TIGR02262 3 YNAAEDLLDRNVVEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL 73 (508)
T ss_pred chHHHHHHHHHHhcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 46778888887 6779999999754 3 479999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceee
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (594)
||+++|++++|+++..+.+++.++++.++++++|++......+.+.. ...+....++..+.... ....
T Consensus 74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~ 141 (508)
T TIGR02262 74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAAL-GKSPHLEHRVVVGRPEA-----------GEVQ 141 (508)
T ss_pred HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHH-hcCCCccEEEEeCCCCc-----------cccc
Confidence 99999999999999999999999999999999999987655443221 12234455555443211 1223
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhh-hhhhhccccCCCCCCcEEEEecChhHH
Q 007672 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
+.++..... .........++++++++|||||||.||+|+++|+++...+.. ....+ ++..+|+++..+|++|.
T Consensus 142 ~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 215 (508)
T TIGR02262 142 LAELLATES-EQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFFA 215 (508)
T ss_pred HHHHhhcCC-CccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHHH
Confidence 444433221 111223445789999999999999999999999999887655 22333 67889999999999999
Q ss_pred HHHHH-HHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007672 279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (594)
Q Consensus 279 ~~~~~-~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (594)
+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|.++..+......
T Consensus 216 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~----------------------- 272 (508)
T TIGR02262 216 YGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNL----------------------- 272 (508)
T ss_pred HHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccc-----------------------
Confidence 99865 5667889999988765 799999999999999999999988776532100
Q ss_pred HhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCcccc
Q 007672 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435 (594)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~ 435 (594)
.... ..++|.+++||+++++++.+.|.+.+++++++.||+||++.+......... ..
T Consensus 273 --------------~~~~--------~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~-~~ 329 (508)
T TIGR02262 273 --------------PAED--------QVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDV-RY 329 (508)
T ss_pred --------------cccc--------cccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCC-CC
Confidence 0000 128999999999999999999999889999999999999986655433322 23
Q ss_pred CccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEecc
Q 007672 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 515 (594)
Q Consensus 436 ~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~ 515 (594)
+++|.|+++++++|+| +++.. ++.|+.|||+++|+.++.||+++++.+...|.++||+|||++++++||.+++.||.
T Consensus 330 ~~~G~~~~g~~v~i~d-~~~~~--~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR~ 406 (508)
T TIGR02262 330 GTSGKPVPGYRLRLVG-DGGQD--VAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRT 406 (508)
T ss_pred CCcCCCCCCcEEEEEC-CCCCC--CCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCccEEEeccc
Confidence 7899999999999999 66544 44568999999999999999999999999899999999999999999999999999
Q ss_pred CceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc-----ee--------eeE------e
Q 007672 516 KNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG-----IL--------EWS------C 570 (594)
Q Consensus 516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~-----~~--------~~~------~ 570 (594)
+|+|++ +|.+|+|.+||++|.++|+|.+++|++.++. ++++....... .. .+. .
T Consensus 407 ~d~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~ 485 (508)
T TIGR02262 407 DDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRW 485 (508)
T ss_pred cceeee-CCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCce
Confidence 999997 7999999999999999999999999997653 22322211100 00 112 2
Q ss_pred eeecCceeeecccccccccccc
Q 007672 571 WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 571 ~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+.....||+|++||++|+.+++
T Consensus 486 i~~~~~iP~t~~gKi~r~~l~~ 507 (508)
T TIGR02262 486 IVFVDDLPKTATGKIQRFKLRE 507 (508)
T ss_pred EEEecCCCCCCCCcEehhhccC
Confidence 4455679999999999999875
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-58 Score=546.35 Aligned_cols=463 Identities=20% Similarity=0.234 Sum_probs=376.0
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..++.++|.++++++||++|+++. + +.+||+||.++++++|+.|.+.|+++|++|+|+++++++++++++|
T Consensus 457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la 527 (1296)
T PRK10252 457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA 527 (1296)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 468999999999999999999865 3 4799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|++|..+.+++.++++++++++++++......+... ... .+...+.
T Consensus 528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~-~~~~~~~------------------- 582 (1296)
T PRK10252 528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDL-TSLCYNA------------------- 582 (1296)
T ss_pred HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCc-eeeeccc-------------------
Confidence 999999999999999999999999999999999998765443211 011 0111110
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
.... ..........++++++++|||||||.||||+++|+++.+.+.+....+ ++.++|++++..|++|..+
T Consensus 583 --~~~~--~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 653 (1296)
T PRK10252 583 --PLAP--QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVS 653 (1296)
T ss_pred --cccc--ccCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhh
Confidence 0000 000111223578999999999999999999999999999998877776 7889999999999999999
Q ss_pred HHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 281 ~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
+..++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++........
T Consensus 654 ~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~-------------------- 713 (1296)
T PRK10252 654 VWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGAR-------------------- 713 (1296)
T ss_pred HHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccccc--------------------
Confidence 8888889999999999763 7899999999999999999999999876532111000
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC-----
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----- 431 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~----- 431 (594)
..+ .++|.+++||+++++++.+.+.+.+++.+++.||+||++..++......
T Consensus 714 ---------------~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 770 (1296)
T PRK10252 714 ---------------QSC--------ASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAA 770 (1296)
T ss_pred ---------------ccC--------CCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccc
Confidence 001 2899999999999999999998888999999999999987666543221
Q ss_pred -ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cC------CccccCceEEE
Q 007672 432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID------GWFHTGDIGQI 503 (594)
Q Consensus 432 -~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~------g~~~TGDlg~~ 503 (594)
.....++|.|++++.++|+| +++..+ +.|..|||+|+|+.++.||+++++.+.+.| .+ +||+|||+|++
T Consensus 771 ~~~~~~~iG~p~~~~~~~i~d-~~~~~~--~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~ 847 (1296)
T PRK10252 771 VRGSSVPIGYPVWNTGLRILD-ARMRPV--PPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARW 847 (1296)
T ss_pred cCCCCCCcccccCCCEEEEEC-CCCCCC--CCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEE
Confidence 12236799999999999999 666544 456899999999999999999999999988 32 39999999999
Q ss_pred cCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecC------------Cchhhcccccc--ccee---
Q 007672 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSC------------SSCAMRRRHQK--VGIL--- 566 (594)
Q Consensus 504 ~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~------------~~~~~~~~~~~--~~~~--- 566 (594)
++||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|+++. ..++++..... ....
T Consensus 848 ~~~G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~ 926 (1296)
T PRK10252 848 LDDGAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQ 926 (1296)
T ss_pred cCCCcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCCHHHHH
Confidence 999999999999999997 79999999999999999999999877541 13444443221 1111
Q ss_pred -----eeEeeeec------CceeeeccccccccccccC
Q 007672 567 -----EWSCWFIP------GTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 567 -----~~~~~~~p------~~i~~~~~gk~~r~~~~~~ 593 (594)
.++.|++| ..+|+|++||+.|++++++
T Consensus 927 ~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~~ 964 (1296)
T PRK10252 927 AQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPLP 964 (1296)
T ss_pred HHHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCCC
Confidence 23445555 4799999999999998764
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=494.99 Aligned_cols=483 Identities=19% Similarity=0.196 Sum_probs=372.1
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
...++.++|.++++++|+++|++.. + +.+||.||.+++.++|+.|.+.|+++||+|+++++|+.+++++++
T Consensus 8 ~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~l 78 (540)
T PRK06164 8 RADTLASLLDAHARARPDAVALIDE---D------RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFL 78 (540)
T ss_pred CCCCHHHHHHHHHHhCCCCeEEecC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHH
Confidence 3458999999999999999999843 2 479999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH-----HHHhcccccccccccEEEEecCCcHHHHHHHhhCC
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 194 (594)
||+++|++++|+++..+.+++.++++.++++++|++.+.. ..+...........+.++.+++..... ..
T Consensus 79 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 152 (540)
T PRK06164 79 ACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADAT------PA 152 (540)
T ss_pred HHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccC------CC
Confidence 9999999999999999999999999999999999986642 111111111122344555544211000 00
Q ss_pred cceeeHHHHHhccccccc---ccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEE
Q 007672 195 IKPYSWDEFLHLGKVNEM---EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271 (594)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (594)
.....+.++......... .......+++++++|||||||.||+|+++|+++...+..+...+ ++..++++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~ 227 (540)
T PRK06164 153 PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLLA 227 (540)
T ss_pred CCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence 000111111111000000 01223568999999999999999999999999999888877766 6789999999
Q ss_pred ecChhHHHHHHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 007672 272 FLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (594)
Q Consensus 272 ~~pl~~~~~~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (594)
.+|++|.+|+...+.++..|+++++.+. ++..+++.|+++++|+++++|.++..|.+... .
T Consensus 228 ~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~-~----------------- 289 (540)
T PRK06164 228 ALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG-E----------------- 289 (540)
T ss_pred cCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc-c-----------------
Confidence 9999999999888889999999998776 89999999999999999999999999876410 0
Q ss_pred HHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEcc-CCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCC
Q 007672 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG-APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429 (594)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G-~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 429 (594)
..++ +++|.+.++| .+...++.+++... ++++++.||+||++..+.....
T Consensus 290 --------------------~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~ 340 (540)
T PRK06164 290 --------------------RADF--------PSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPA 340 (540)
T ss_pred --------------------cCCC--------cceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCC
Confidence 0112 2788877666 55666777777665 8999999999999887655443
Q ss_pred CCc--cccCccccCc-cCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcC
Q 007672 430 DEM--CMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP 505 (594)
Q Consensus 430 ~~~--~~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~ 505 (594)
... ......|.+. +++.++|+|.+++ .+++.|+.|||+++|++++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus 341 ~~~~~~~~~~~g~~~~~~~~~~i~d~~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~ 418 (540)
T PRK06164 341 TDPVSVRIEGGGRPASPEARVRARDPQDG--ALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRG 418 (540)
T ss_pred CCCCcceeccCccccCCCeEEEEecCCCC--cCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcC
Confidence 221 1224567764 8999999993333 345667999999999999999999999999998 789999999999999
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCC-----chhhcccccc--ccee--------eeEe
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCS-----SCAMRRRHQK--VGIL--------EWSC 570 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~-----~~~~~~~~~~--~~~~--------~~~~ 570 (594)
||++++.||.+|+|++ +|++|+|.+||++|.++|+|.+++|++++. .++++..... .... .++.
T Consensus 419 ~g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~ 497 (540)
T PRK06164 419 DGQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGASPDEAGLMAACREALAG 497 (540)
T ss_pred CceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence 9999999999999997 799999999999999999999999998653 2333332211 1111 1222
Q ss_pred ------eeecCceeeeccc---ccccccccc
Q 007672 571 ------WFIPGTLFTCSAT---KLYPLRAEE 592 (594)
Q Consensus 571 ------~~~p~~i~~~~~g---k~~r~~~~~ 592 (594)
+.....+|+|++| |++|+.+++
T Consensus 498 ~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~ 528 (540)
T PRK06164 498 FKVPARVQVVEAFPVTESANGAKIQKHRLRE 528 (540)
T ss_pred CcCCcEEEEecCCCCCCCCccccccHHHHHH
Confidence 4455679999999 999998875
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=489.52 Aligned_cols=458 Identities=20% Similarity=0.212 Sum_probs=361.2
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
...++.+.|...++++||++|+++. + +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 103 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF 103 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3477999999999999999999854 3 379999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceee
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (594)
||+++|++++|+++..+.+++.++++.++++.+++++.....+.... ..++.++....
T Consensus 104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~--------------- 161 (516)
T PRK13383 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPATA--------------- 161 (516)
T ss_pred HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccchh---------------
Confidence 99999999999999999999999999999999999887655432210 11222221100
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHH--hhhhhhhccccCCCCCCcEEEEecChhH
Q 007672 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV--SGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (594)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 277 (594)
... .....+...++.++++|||||||.||+|+++|....... ......+ ++..++++++.+|++|
T Consensus 162 --~~~------~~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~pl~h 228 (516)
T PRK13383 162 --GAE------ESGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-----RLRTGSRISVAMPMFH 228 (516)
T ss_pred --hhh------cCCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-----ccCCCCeEEEecCCcc
Confidence 000 000111234567899999999999999999997432111 1111222 5778899999999999
Q ss_pred HHHHHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 278 ~~~~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
.+++...+.++..|+++++... ++..+++.++++++|.+.++|.++..+.........
T Consensus 229 ~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------- 287 (516)
T PRK13383 229 GLGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRA--------------------- 287 (516)
T ss_pred hhhHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccc---------------------
Confidence 9999877788999999988665 899999999999999999999999888643211000
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccC
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG 436 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~ 436 (594)
..++ +++|.+++||+++++++.+.+.+.++..+++.||+||++..+...........+
T Consensus 288 --------------~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~ 345 (516)
T PRK13383 288 --------------RNPL--------PQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPE 345 (516)
T ss_pred --------------cCCC--------CceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCC
Confidence 0011 289999999999999999999999999999999999998765544333233347
Q ss_pred ccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccC
Q 007672 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 516 (594)
Q Consensus 437 ~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~ 516 (594)
++|.|+++++++|+| +++. +++.++.|||+++|+.++.||++++. ..+.+|||+|||+|++|+||++++.||.+
T Consensus 346 ~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~l~i~GR~~ 419 (516)
T PRK13383 346 TVGKPVAGCPVRILD-RNNR--PVGPRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLDNAGRLFIVGRED 419 (516)
T ss_pred cccCCCCCcEEEEEC-CCCC--CCCCCCceEEEEecCcccccccCCch---hheecCceecceeEEEcCCccEEEecccc
Confidence 899999999999999 6554 44556899999999999999998754 33468999999999999999999999999
Q ss_pred ceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--cccee--------ee------Eeeeec
Q 007672 517 NLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--KVGIL--------EW------SCWFIP 574 (594)
Q Consensus 517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~~~~~--------~~------~~~~~p 574 (594)
|+|++ +|++|+|.+||++|.++|.|.+++|+++++. .+++.... ..... .+ ..+...
T Consensus 420 ~~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v 498 (516)
T PRK13383 420 DMIIS-GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDINIV 498 (516)
T ss_pred ceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEe
Confidence 99996 8999999999999999999999999998764 22333211 11111 11 235566
Q ss_pred Cceeeeccccccccccc
Q 007672 575 GTLFTCSATKLYPLRAE 591 (594)
Q Consensus 575 ~~i~~~~~gk~~r~~~~ 591 (594)
..||+|++||+.|++++
T Consensus 499 ~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 499 SSIPRNPTGKVLRKELP 515 (516)
T ss_pred CCCCCCCCCcCcHHHhC
Confidence 78999999999999875
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=494.76 Aligned_cols=489 Identities=21% Similarity=0.279 Sum_probs=370.0
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
..+++.++|..++..+|+++|+++. + +.+||.||.+++.++|++|.+.|+++||+|+++++|+.+++++++
T Consensus 22 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 92 (563)
T PRK06710 22 DIQPLHKYVEQMASRYPEKKALHFL---G------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY 92 (563)
T ss_pred CcccHHHHHHHHHHHCCCceEEEec---C------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 3468999999999999999999875 3 579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcH---HHH---HHHh--
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA---EQK---EMAV-- 191 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~~~~-- 191 (594)
||+++|++++|++|..+.+++.++++.++++.+++++........... ......++....... ... ....
T Consensus 93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (563)
T PRK06710 93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQS--ATKIEHVIVTRIADFLPFPKNLLYPFVQKK 170 (563)
T ss_pred HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccch--hhccceeEEeccccccccccccccchhhcc
Confidence 999999999999999999999999999999999998765443321110 011122222110000 000 0000
Q ss_pred --------hCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCC
Q 007672 192 --------QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM 263 (594)
Q Consensus 192 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~ 263 (594)
........|+.+.... ...........+++++++|||||||.||+|.++|.++..........+ . ..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~-~~ 245 (563)
T PRK06710 171 QSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL---Y-NC 245 (563)
T ss_pred cccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc---c-CC
Confidence 0000001122221111 111111112357899999999999999999999999976543322211 0 22
Q ss_pred -CCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchH
Q 007672 264 -TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340 (594)
Q Consensus 264 -~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~ 340 (594)
...+++++++|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++...
T Consensus 246 ~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------- 316 (563)
T PRK06710 246 KEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL--------- 316 (563)
T ss_pred CCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCc---------
Confidence 34568899999999998865 5567889999998766 89999999999999999999999998764211
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCC
Q 007672 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420 (594)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~ 420 (594)
....+++ ++|.+++||+++++++.+++.+.+++.+++.||+||+
T Consensus 317 ----------------------------~~~~~~~--------~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~ 360 (563)
T PRK06710 317 ----------------------------LKEYDIS--------SIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTES 360 (563)
T ss_pred ----------------------------cccCChh--------hhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccC
Confidence 0111222 7899999999999999999998889999999999999
Q ss_pred CCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCce
Q 007672 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500 (594)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDl 500 (594)
+.++...........+++|.+.+++.+++++.+++ .+++.|..|||+++|+.++.||+++++.+...|.+|||+|||+
T Consensus 361 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~ 438 (563)
T PRK06710 361 SPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETG--EALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDV 438 (563)
T ss_pred ccccccCcccccccCCccCCCCCCCeEEEEECCCC--ccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccce
Confidence 88655433222233478999999999999983333 3455668999999999999999999999998889999999999
Q ss_pred EEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc--ccee------
Q 007672 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK--VGIL------ 566 (594)
Q Consensus 501 g~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~--~~~~------ 566 (594)
|++++||++++.||.+|+|++ +|++|+|.+||++|.++|.|.+|+|++.+++ ++++..... .+..
T Consensus 439 ~~~~~~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~ 517 (563)
T PRK06710 439 GYMDEDGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFA 517 (563)
T ss_pred EEEcCCCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCCHHHHHHHH
Confidence 999999999999999999997 7999999999999999999999999998774 233332211 1111
Q ss_pred --eeEe------eeecCceeeecccccccccccc
Q 007672 567 --EWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 567 --~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.+.. +.....||+|++||++|+.+++
T Consensus 518 ~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~ 551 (563)
T PRK06710 518 RKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIE 551 (563)
T ss_pred HHhcccccCCcEEEEcccCCCCccchhhHHHHHH
Confidence 1122 4445669999999999998865
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-57 Score=488.19 Aligned_cols=458 Identities=17% Similarity=0.177 Sum_probs=364.8
Q ss_pred cHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 007672 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122 (594)
Q Consensus 43 tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~ 122 (594)
++.+.|.+.++.+|+++|+... + +.+||+||.+++.++|+.|.+.|+++|++|+++++|+.+++++++||+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~ 71 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI 71 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence 5789999999999999999764 3 489999999999999999999999999999999999999999999999
Q ss_pred hcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHH
Q 007672 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202 (594)
Q Consensus 123 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (594)
++|++++|+++.++.+++.++++..++++++++........ ... ++.++.. ..
T Consensus 72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~--------~~~-~~~~~~~------------------~~ 124 (502)
T TIGR01734 72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAV--------GTQ-IITLSAL------------------EQ 124 (502)
T ss_pred HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEeccccccccc--------CCc-eEEchHh------------------hh
Confidence 99999999999999999999999999999999876433221 111 1111110 11
Q ss_pred HHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHH
Q 007672 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282 (594)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~ 282 (594)
+.... ..........+++.++++|||||||.||+|+++|+++...+.+....+ ....+++++++.|++|..++.
T Consensus 125 ~~~~~-~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~ 198 (502)
T TIGR01734 125 AETSG-GPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVM 198 (502)
T ss_pred hhhhc-CCccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHH
Confidence 11111 001111234678999999999999999999999999999888766654 678899999999999999888
Q ss_pred HHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007672 283 IEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (594)
Q Consensus 283 ~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (594)
.++.++..|+++++.+. ++..+++.+.+++++.+.++|.+++.+.......
T Consensus 199 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~------------------------- 253 (502)
T TIGR01734 199 DLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFN------------------------- 253 (502)
T ss_pred HHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccc-------------------------
Confidence 78889999999998764 7889999999999999999999988765321100
Q ss_pred ccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCC----Ccc
Q 007672 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD----EMC 433 (594)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~----~~~ 433 (594)
..++ ++++.++++|++++.++.+.+.+.+ ++.+++.||+||++......... ...
T Consensus 254 ------------~~~~--------~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01734 254 ------------QENY--------PHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY 313 (502)
T ss_pred ------------cccC--------CcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccC
Confidence 0111 2899999999999999999998877 88999999999997644332211 112
Q ss_pred ccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc--cC--CccccCceEEEcCCCcE
Q 007672 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--ID--GWFHTGDIGQILPNGVV 509 (594)
Q Consensus 434 ~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~~--g~~~TGDlg~~~~dG~l 509 (594)
...++|.+.++++++|++ +++.. ++.|+.|||+++|+.++.||+++++.+.+.| .+ +||+|||+|++|++ +|
T Consensus 314 ~~~~vg~~~~~~~~~i~~-~~~~~--~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l 389 (502)
T TIGR01734 314 PRLPIGFAKPDMNLFIMD-EEGEP--LPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QL 389 (502)
T ss_pred CccccccccCCCEEEEEC-CCCCC--CCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EE
Confidence 235799999999999999 65544 4456899999999999999999999988876 23 59999999999866 99
Q ss_pred EEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecC--C-----chhhcccccccc-----e---------eee
Q 007672 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSC--S-----SCAMRRRHQKVG-----I---------LEW 568 (594)
Q Consensus 510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~--~-----~~~~~~~~~~~~-----~---------~~~ 568 (594)
++.||.+|+|++ +|++|+|.+||++|.++|.|++|+|+++. + .++++....... + ..+
T Consensus 390 ~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l 468 (502)
T TIGR01734 390 FYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSL 468 (502)
T ss_pred EEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHHHHHHHHhhhC
Confidence 999999999996 89999999999999999999999999854 1 122332221110 0 112
Q ss_pred E------eeeecCceeeecccccccccccc
Q 007672 569 S------CWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 569 ~------~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+ .+.....+|+|++||++|+++++
T Consensus 469 ~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~ 498 (502)
T TIGR01734 469 PAYMIPRKFIYRDQLPLTANGKIDRKALAE 498 (502)
T ss_pred hhhcCCcEEEEccccCCCCCCcccHHHHHH
Confidence 2 25556679999999999999875
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-57 Score=492.26 Aligned_cols=491 Identities=20% Similarity=0.229 Sum_probs=374.0
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
....++.++|.++++.+||++|+.+. + +.+||.||.+++.++|.+|.++|+++|++|+++++|++++++++
T Consensus 30 ~~~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~ 100 (567)
T PRK06178 30 HGERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVF 100 (567)
T ss_pred cCcccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHH
Confidence 44468999999999999999999875 3 47999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHH--HHHhhCC--
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK--EMAVQTG-- 194 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~-- 194 (594)
+||+++|++++|++|..+.+++.+++++++++++++++...+.+.+.... .....++.......... .......
T Consensus 101 lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
T PRK06178 101 FGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAE--TSLRHVIVTSLADVLPAEPTLPLPDSLR 178 (567)
T ss_pred HHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhcc--CCcceEEEeccccccccccccccccccc
Confidence 99999999999999999999999999999999999998776655432211 12333333321110000 0000000
Q ss_pred ---cceeeHHHHHhccc--ccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEE
Q 007672 195 ---IKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY 269 (594)
Q Consensus 195 ---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (594)
.....+.++..... ..........++++++++|||||||.||+|++||.+++..+....... ..+...+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~d~~ 254 (567)
T PRK06178 179 APRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGEDSVF 254 (567)
T ss_pred cccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCCCcEE
Confidence 00011222222211 111122345678999999999999999999999999987765543221 156788999
Q ss_pred EEecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 007672 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (594)
Q Consensus 270 ~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (594)
++++|++|.+|+.. ++.++..|+++++.+. ++..++..++++++|.+.++|..+..+.....
T Consensus 255 l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~---------------- 318 (567)
T PRK06178 255 LSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR---------------- 318 (567)
T ss_pred EEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC----------------
Confidence 99999999999864 6678999999999876 89999999999999999999998887753210
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEE--EccCCCCHHHHHHHHHhcCCceEe-eecccCCCCce
Q 007672 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI--SGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTETCGPT 424 (594)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~--~~G~~l~~~~~~~~~~~~~~~i~~-~yG~tE~~~~~ 424 (594)
....+++ +++.+. +.++.+++++.+.+.+.++..++. .||+||++..+
T Consensus 319 ---------------------~~~~~l~--------~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~ 369 (567)
T PRK06178 319 ---------------------FAEYDLS--------SLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCD 369 (567)
T ss_pred ---------------------CCCCCcc--------hheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccc
Confidence 0111222 566654 445899999999999988877765 79999998764
Q ss_pred eccCCC--C----ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccC
Q 007672 425 TVCFPD--E----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498 (594)
Q Consensus 425 ~~~~~~--~----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TG 498 (594)
...... . ...++++|.|++|++++++|.+++. +++.|+.|||+++|++++.||+++++.+...|.+|||+||
T Consensus 370 ~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~--~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TG 447 (567)
T PRK06178 370 TFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGE--LLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTG 447 (567)
T ss_pred eeccccccCccccccCCcccccccCCcEEEEEcCCCCC--cCCCCCceEEEEECCcccccccCChhhhhhcccCCceeec
Confidence 443211 1 1223679999999999999843344 3445689999999999999999999999988889999999
Q ss_pred ceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc--cce-----
Q 007672 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK--VGI----- 565 (594)
Q Consensus 499 Dlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~--~~~----- 565 (594)
|+|++++||++++.||.+|+|++ +|++|+|.+||++|.++|+|.+++|++++++ +++++.... .+.
T Consensus 448 Dl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~ 526 (567)
T PRK06178 448 DIGKIDEQGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQA 526 (567)
T ss_pred ceEEEecCCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCCHHHHHH
Confidence 99999999999999999999997 7999999999999999999999999998764 333332211 111
Q ss_pred --------eeeEeeeecCceeeecccccccccccc
Q 007672 566 --------LEWSCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 566 --------~~~~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
...+.+.....+|+|++||+.|+.+++
T Consensus 527 ~~~~~l~~~~~p~i~~v~~iP~t~~GKv~r~~l~~ 561 (567)
T PRK06178 527 WCRENMAVYKVPEIRIVDALPMTATGKVRKQDLQA 561 (567)
T ss_pred HHHhcCcccCCceEEEeccCCCCCccceeHHHHHH
Confidence 111335556689999999999988764
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-57 Score=482.52 Aligned_cols=437 Identities=25% Similarity=0.263 Sum_probs=352.1
Q ss_pred HHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeec
Q 007672 52 VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131 (594)
Q Consensus 52 a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i 131 (594)
+...++++|+++. + +++||.||.++++++|..|. ++|+|+++++|+++++++++||+++|++++|+
T Consensus 10 ~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l 75 (471)
T PRK07787 10 AAAADIADAVRIG---G------RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPV 75 (471)
T ss_pred hcccCCceEEEeC---C------cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence 3456888998864 3 58999999999999999996 47999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcccccc
Q 007672 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211 (594)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (594)
++..+.+++.++++++++++++++..... ..+........ ...+.
T Consensus 76 ~~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~~~~~~---------------~~~~~---------- 120 (471)
T PRK07787 76 PPDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHVPVRLH---------------ARSWH---------- 120 (471)
T ss_pred CCCCChHHHHHHHHhcCCCEEEecCCccc----------ccccceeeecc---------------ccccc----------
Confidence 99999999999999999999999864210 01111000000 00010
Q ss_pred cccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHH-HHHhhhc
Q 007672 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRR 290 (594)
Q Consensus 212 ~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~ 290 (594)
......++++++++|||||||.||+|+++|+++...+......+ ++..++++++.+|++|.+|+.. ++.++..
T Consensus 121 -~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~ 194 (471)
T PRK07787 121 -RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRI 194 (471)
T ss_pred -cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhc
Confidence 11123578999999999999999999999999999888776666 6788899999999999999886 6778999
Q ss_pred CcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHH
Q 007672 291 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369 (594)
Q Consensus 291 G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (594)
|+++++.+. ++..+++.|+ +++|++.++|.++..|.+.....
T Consensus 195 G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~~------------------------------------ 237 (471)
T PRK07787 195 GNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEAA------------------------------------ 237 (471)
T ss_pred CCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcccc------------------------------------
Confidence 999988765 8999999999 99999999999998886421100
Q ss_pred HHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCccCceEEe
Q 007672 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL 449 (594)
Q Consensus 370 ~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i 449 (594)
..+ .++|.+++||+++++++.+.+.+.++..+++.||+||++......... ....+++|.|+++++++|
T Consensus 238 --~~l--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~vG~~~~g~~~~i 306 (471)
T PRK07787 238 --RAL--------RGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADG-ERRPGWVGLPLAGVETRL 306 (471)
T ss_pred --ccc--------cceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCC-cccCCcccccCCCcEEEE
Confidence 001 279999999999999999999988899999999999998755443322 223478999999999999
Q ss_pred eecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEEEecc-CceeEcCCceee
Q 007672 450 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYV 527 (594)
Q Consensus 450 ~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~GR~-~d~i~~~~G~~v 527 (594)
+| +++..++.+.+..|||+++|++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||. +|+++. +|++|
T Consensus 307 ~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v 384 (471)
T PRK07787 307 VD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKS-GGYRI 384 (471)
T ss_pred EC-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEee-CCEEE
Confidence 99 66655543223489999999999999999999999998 6899999999999999999999996 889995 89999
Q ss_pred chHHHHHHHhcCCCccceEEeecCCc------hhhccccccccee--------eeEe------eeecCceeeeccccccc
Q 007672 528 ALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGIL--------EWSC------WFIPGTLFTCSATKLYP 587 (594)
Q Consensus 528 ~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~~--------~~~~------~~~p~~i~~~~~gk~~r 587 (594)
+|.+||++|.++|.|++++|++.++. ++++......... .+.. +.....||+|++||++|
T Consensus 385 ~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r 464 (471)
T PRK07787 385 GAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDVAADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLK 464 (471)
T ss_pred CHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCCCHHHHHHHHHhhcccccCCcEEEEeccCCCCCCccccH
Confidence 99999999999999999999998774 2333321111111 1222 44457899999999999
Q ss_pred cccccC
Q 007672 588 LRAEEC 593 (594)
Q Consensus 588 ~~~~~~ 593 (594)
+.+++-
T Consensus 465 ~~L~~~ 470 (471)
T PRK07787 465 KQLLSE 470 (471)
T ss_pred HHhccC
Confidence 998863
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-57 Score=577.40 Aligned_cols=466 Identities=19% Similarity=0.179 Sum_probs=380.2
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
+...++.++|.++++++|+++|+++. + +.+||+||.++++++|+.|+++|+++|++|+|++++++++++++
T Consensus 1571 ~~~~~~~~~~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~ 1641 (3956)
T PRK12467 1571 PLARLVHQLIEDQAAATPEAVALVFG---E------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGL 1641 (3956)
T ss_pred CccccHHHHHHHHHHhCCCCeEEEeC---C------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHH
Confidence 34468999999999999999999875 4 47999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+||+++|++++|++|.++.+++.++++++++++++++......+.. . ... .++.++...
T Consensus 1642 lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~-~----~~~-~~~~~~~~~--------------- 1700 (3956)
T PRK12467 1642 LAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPL-P----DGL-RSLVLDQED--------------- 1700 (3956)
T ss_pred HHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCcc-c----cCC-cEEEecccc---------------
Confidence 9999999999999999999999999999999999998765443311 0 111 222322211
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
.+.... ..........++++++++|||||||.||||+++|+++.+.+......+ ++..++++++..|+.|.
T Consensus 1701 ---~~~~~~-~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 1771 (3956)
T PRK12467 1701 ---DWLEGY-SDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-----QLSAADVVLQFTSFAFD 1771 (3956)
T ss_pred ---chhccC-CCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-----CCCcccEEEEecCccHH
Confidence 000100 111122335678999999999999999999999999999998877766 78899999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
.++..++.++..|+++++.+. ++..+++.|+++++|++.++|++++.|.+... ...
T Consensus 1772 ~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~------------------- 1831 (3956)
T PRK12467 1772 VSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QVE------------------- 1831 (3956)
T ss_pred HHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-ccc-------------------
Confidence 998888899999999999764 78999999999999999999999999865310 000
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCC---
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD--- 430 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~--- 430 (594)
++ ++||.+++||+++++++.+.+.+.+ +..++|.||+||++..++.....
T Consensus 1832 ------------------~~--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~ 1885 (3956)
T PRK12467 1832 ------------------HP--------LSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKD 1885 (3956)
T ss_pred ------------------cC--------CCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccc
Confidence 01 2899999999999999999887766 57899999999999876654322
Q ss_pred -CccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-c-------CCccccCceE
Q 007672 431 -EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I-------DGWFHTGDIG 501 (594)
Q Consensus 431 -~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~-------~g~~~TGDlg 501 (594)
......++|+|+++++++|+| +++..+ +.|..|||+++|+++++||+++++.++++| . ++||+|||+|
T Consensus 1886 ~~~~~~~~iG~p~~~~~~~vld-~~~~~v--p~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~ 1962 (3956)
T PRK12467 1886 LEGRDSVPIGQPIANLSTYILD-ASLNPV--PIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLA 1962 (3956)
T ss_pred cccCCCCCcccccCCCEEEEEC-CCCCCC--CCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceE
Confidence 112236899999999999999 655544 455899999999999999999999999998 2 2499999999
Q ss_pred EEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCC-----chhhcccccccc------------
Q 007672 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCS-----SCAMRRRHQKVG------------ 564 (594)
Q Consensus 502 ~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~-----~~~~~~~~~~~~------------ 564 (594)
++++||+|+++||.||+||+ +|++|+|.|||++|.++|+|.+|+|++.++ .++++.......
T Consensus 1963 ~~~~dG~l~~~GR~D~qVki-~G~rIel~eIE~~l~~~p~V~~a~vv~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~ 2041 (3956)
T PRK12467 1963 RYRADGVIEYLGRIDHQVKI-RGFRIELGEIEARLREQGGVREAVVIAQDGANGKQLVAYVVPTDPGLVDDDEAQVALRA 2041 (3956)
T ss_pred EECCCCCEEEecccCceEEe-CeEEechHHHHHHHHhCCCcceEEEEEecCCCCcEEEEEEEecCcccccccccccccHH
Confidence 99999999999999999998 799999999999999999999999998763 255554322111
Q ss_pred -e-----eeeEeeeec------CceeeeccccccccccccC
Q 007672 565 -I-----LEWSCWFIP------GTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 565 -~-----~~~~~~~~p------~~i~~~~~gk~~r~~~~~~ 593 (594)
+ ..++.|++| ..+|+|++||+.|+.++++
T Consensus 2042 ~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidr~~L~~~ 2082 (3956)
T PRK12467 2042 ILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKALPAP 2082 (3956)
T ss_pred HHHHHHHhhCchhhCchhhhhhhcCCCCCCCCcchhhCCCC
Confidence 1 123556665 5589999999999999764
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-57 Score=490.66 Aligned_cols=490 Identities=21% Similarity=0.264 Sum_probs=372.8
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
+.++.++|..+++++|+++|+++. + +.+||.||.++++++|..|.+ .|+++|++|+++++|+++++++++
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 92 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINM---G------EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF 92 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEEC---C------ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 457999999999999999999864 3 479999999999999999984 799999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHH--HH---------
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KE--------- 188 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~--------- 188 (594)
||+++|++++|++|..+.+++.++++.+++++++++++....+..... . .....++......... ..
T Consensus 93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (560)
T PRK08974 93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVF-K-TPVKHVILTRMGDQLSTAKGTLVNFVVKY 170 (560)
T ss_pred HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhh-h-cCcceEEEecccccccccccccccchhhh
Confidence 999999999999999999999999999999999998754433222111 0 1122222211100000 00
Q ss_pred -H---HhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCC
Q 007672 189 -M---AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264 (594)
Q Consensus 189 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~ 264 (594)
. .........++.+.................+++++++|||||||.||+|.++|.++...+......+.. ....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~ 248 (560)
T PRK08974 171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGP--LLHP 248 (560)
T ss_pred cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhcc--ccCC
Confidence 0 000001112222222222111112223467899999999999999999999999998876544332210 0123
Q ss_pred CCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHH
Q 007672 265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341 (594)
Q Consensus 265 ~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~ 341 (594)
..+.++..+|++|.+++.. .+.++..|+++++... ++..+++.++++++|++.++|++++.+......
T Consensus 249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--------- 319 (560)
T PRK08974 249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEF--------- 319 (560)
T ss_pred CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCc---------
Confidence 4578889999999998765 5567788888777643 788999999999999999999999988642110
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCC
Q 007672 342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421 (594)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~ 421 (594)
...++ +++|.+++||+++++.+.+.+.+.+|+.+++.||+||++
T Consensus 320 ----------------------------~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~ 363 (560)
T PRK08974 320 ----------------------------QELDF--------SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECS 363 (560)
T ss_pred ----------------------------ccCCc--------cceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccC
Confidence 01112 289999999999999999999988899999999999999
Q ss_pred CceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceE
Q 007672 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501 (594)
Q Consensus 422 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg 501 (594)
.+++....+.....+++|.|++++.++|++ +++. +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|
T Consensus 364 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~ 440 (560)
T PRK08974 364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGN--EVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIA 440 (560)
T ss_pred ceeeccCCCCcccCCccccCcCCCEEEEEC-CCCC--CCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEE
Confidence 877665544333457899999999999999 6554 4455689999999999999999999999888889999999999
Q ss_pred EEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc-ccce--------e
Q 007672 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ-KVGI--------L 566 (594)
Q Consensus 502 ~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~-~~~~--------~ 566 (594)
+++++|++++.||.+|+|++ +|.+++|.+||++|.++|+|.+++|++.++. ++++.... .... .
T Consensus 441 ~~~~~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~l~~~l~~ 519 (560)
T PRK08974 441 VMDEEGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSLTEEELITHCRR 519 (560)
T ss_pred EEcCCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCCCCHHHHHHHHHh
Confidence 99999999999999999997 7999999999999999999999999998764 22222211 1111 1
Q ss_pred eeEe------eeecCceeeecccccccccccc
Q 007672 567 EWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 567 ~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.+.. +..+..||+|++||+.|+.+++
T Consensus 520 ~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~ 551 (560)
T PRK08974 520 HLTGYKVPKLVEFRDELPKSNVGKILRRELRD 551 (560)
T ss_pred hcccccCCcEEEEhhhCCCCCCCcEeHHHHHH
Confidence 1233 4445679999999999998875
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-57 Score=483.86 Aligned_cols=462 Identities=18% Similarity=0.172 Sum_probs=352.6
Q ss_pred HHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEe
Q 007672 50 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV 129 (594)
Q Consensus 50 ~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v 129 (594)
.+|+++|+++|+++. ++. +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~ 77 (501)
T PRK13390 5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT 77 (501)
T ss_pred hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence 467889999999864 321 5899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcccc
Q 007672 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 209 (594)
Q Consensus 130 ~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (594)
|+++..+++++.+++.++++++++++......... .. ......+.+..... ....+++......
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~---~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~- 141 (501)
T PRK13390 78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAK-VG---ADLPLRLSFGGEID-----------GFGSFEAALAGAG- 141 (501)
T ss_pred ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHH-hh---hccceEEEecCccc-----------ccccHHHHhcccC-
Confidence 99999999999999999999999998754322111 10 01111112111100 1122333322110
Q ss_pred cccccCCCCCCCeEEEEecCCCCCCCceEee--ccHhHHHHHhh----hhhhhccccCCCCCCcEEEEecChhHHHHHHH
Q 007672 210 NEMEILPPQPFNICTIMYTSGTSGDPKGVVL--THETIATFVSG----VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI 283 (594)
Q Consensus 210 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~--th~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~ 283 (594)
......++.++++|||||||.||+|++ +|.++...... ....+ .+..++++++.+|++|.+++..
T Consensus 142 ----~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~ 212 (501)
T PRK13390 142 ----PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-----DISESDIYYSSAPIYHAAPLRW 212 (501)
T ss_pred ----CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-----CCCCCCeEEecccchhhhHHHH
Confidence 011123357999999999999999995 45555432211 11122 5778899999999999998765
Q ss_pred HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCC
Q 007672 284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362 (594)
Q Consensus 284 ~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (594)
....+..|+++++.+. ++..+++.|+++++|++.++|+++..+.+......
T Consensus 213 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------- 264 (501)
T PRK13390 213 CSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR---------------------------- 264 (501)
T ss_pred HHHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc----------------------------
Confidence 5556678999988766 89999999999999999999999988864211100
Q ss_pred CCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCc
Q 007672 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442 (594)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~ 442 (594)
...+++ ++|.+++||+++++++.+.+.+.++..+++.||+||+++++...........+++|.|+
T Consensus 265 -------~~~~~~--------~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~ 329 (501)
T PRK13390 265 -------TRYDVS--------SLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSV 329 (501)
T ss_pred -------ccCChh--------hhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcc
Confidence 011122 78999999999999999999988899999999999998765544332223347899999
Q ss_pred cCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc---CCccccCceEEEcCCCcEEEEeccCcee
Q 007672 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLI 519 (594)
Q Consensus 443 ~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~---~g~~~TGDlg~~~~dG~l~~~GR~~d~i 519 (594)
++ .++|+| +++.. ++.|+.|||+++|++++.||+++++.+.+.+. ++|++|||+|++|+||++++.||.||+|
T Consensus 330 ~g-~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i 405 (501)
T PRK13390 330 LG-DLHICD-DDGNE--LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMI 405 (501)
T ss_pred cc-eEEEEC-CCCCC--CCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccce
Confidence 99 699998 65544 45669999999999999999999999988872 6899999999999999999999999999
Q ss_pred EcCCceeechHHHHHHHhcCCCccceEEeecCCch------hhccccc--ccc---eee--------eE------eeeec
Q 007672 520 KISQGEYVALEYLENVYCVAPIIEDPQVNVSCSSC------AMRRRHQ--KVG---ILE--------WS------CWFIP 574 (594)
Q Consensus 520 ~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~~------~~~~~~~--~~~---~~~--------~~------~~~~p 574 (594)
++ +|++|+|.+||++|.+||+|.||+|++++++. +++.... ... ..+ +. .+...
T Consensus 406 ~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~ 484 (501)
T PRK13390 406 IS-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEFV 484 (501)
T ss_pred eE-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCcEEEEe
Confidence 96 89999999999999999999999999988752 2322111 100 001 12 24445
Q ss_pred Cceeeeccccccccccc
Q 007672 575 GTLFTCSATKLYPLRAE 591 (594)
Q Consensus 575 ~~i~~~~~gk~~r~~~~ 591 (594)
+.||+|++||++|+++|
T Consensus 485 ~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 485 DELPRTPTGKLVKGLLR 501 (501)
T ss_pred ccCCCCCccceehhhcC
Confidence 67999999999999886
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-57 Score=584.69 Aligned_cols=465 Identities=19% Similarity=0.233 Sum_probs=379.5
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
+...++.++|.++++++|+++|+++. + +.+||+||.++++++|+.|++.|+++|++|+|++++++++++++
T Consensus 2000 ~~~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~ 2070 (5163)
T PRK12316 2000 PRGPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVAL 2070 (5163)
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34568999999999999999999876 4 47999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+||+++|++++|++|.++.+++.++++++++++++++......+... .... .+.++.. .
T Consensus 2071 lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~-~~~~~~~-~-------------- 2129 (5163)
T PRK12316 2071 LAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGVA-RLPLDRD-A-------------- 2129 (5163)
T ss_pred HHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----cccc-eEeccch-h--------------
Confidence 99999999999999999999999999999999999988765433110 1111 1111110 0
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
.+ ... ..........++++++++|||||||.||||+++|+++.+.+......+ ++.++++++.+.|++|.
T Consensus 2130 ~~---~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 2199 (5163)
T PRK12316 2130 EW---ADY--PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFD 2199 (5163)
T ss_pred hh---hcc--CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHH
Confidence 00 000 111122345789999999999999999999999999999998887776 78899999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (594)
.++..++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+......
T Consensus 2200 ~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------- 2258 (5163)
T PRK12316 2200 GAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG--------------------- 2258 (5163)
T ss_pred HHHHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhccc---------------------
Confidence 888888999999999977653 78999999999999999999999999865321110
Q ss_pred HhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCCcc-
Q 007672 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC- 433 (594)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~- 433 (594)
...+||.+++||+++++++.+.|.+.+ +..+++.||+||++..++........
T Consensus 2259 -------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 2313 (5163)
T PRK12316 2259 -------------------------RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDP 2313 (5163)
T ss_pred -------------------------CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccc
Confidence 002799999999999999999988765 67899999999998876654322211
Q ss_pred ---ccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-c-------CCccccCceEE
Q 007672 434 ---MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I-------DGWFHTGDIGQ 502 (594)
Q Consensus 434 ---~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~-------~g~~~TGDlg~ 502 (594)
...++|+|++|++++|+| +++.. ++.|..|||+|+|+++++||+++|+.|++.| . ++||+|||+|+
T Consensus 2314 ~~~~~~~iG~p~~~~~~~i~d-~~~~~--vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~ 2390 (5163)
T PRK12316 2314 CGAAYVPIGRALGNRRAYILD-ADLNL--LAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLAR 2390 (5163)
T ss_pred cCCCcCCcccccCCCEEEEEC-CCCCC--CCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEE
Confidence 125799999999999999 66654 4556999999999999999999999999998 2 24999999999
Q ss_pred EcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc-----hhhcccccc--cce--------ee
Q 007672 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS-----CAMRRRHQK--VGI--------LE 567 (594)
Q Consensus 503 ~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~-----~~~~~~~~~--~~~--------~~ 567 (594)
+++||+|+++||.||+||+ +|++|+|.|||++|.++|+|.+|+|++.++. ++++..... ... ..
T Consensus 2391 ~~~dG~l~~~GR~d~~iki-~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~v~~~~~~~~~~~~l~~~l~~~ 2469 (5163)
T PRK12316 2391 YRADGVVEYLGRIDHQVKI-RGFRIELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYVVPDDAAEDLLAELRAWLAAR 2469 (5163)
T ss_pred EcCCCcEEEecCCCCeEEE-cCccCChHHHHHHHhhCcccceEEEEEEecCCCeEEEEEEEecCCCccCHHHHHHHHHhh
Confidence 9999999999999999998 7999999999999999999999999987653 444443221 111 12
Q ss_pred eEeeeec------CceeeeccccccccccccC
Q 007672 568 WSCWFIP------GTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 568 ~~~~~~p------~~i~~~~~gk~~r~~~~~~ 593 (594)
++.|++| ..+|+|++||+.|+.+++.
T Consensus 2470 Lp~~~vP~~~~~l~~lP~t~~GKidR~~L~~~ 2501 (5163)
T PRK12316 2470 LPAYMVPAHWVVLERLPLNPNGKLDRKALPKP 2501 (5163)
T ss_pred CchhcCcceEeeecccCCCCCCccCHhhcCCC
Confidence 3455555 5689999999999999764
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=484.78 Aligned_cols=485 Identities=25% Similarity=0.297 Sum_probs=360.1
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
+++.+.|++.++.+|+++|+++. + ..+||.||.+++.++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~ 88 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV 88 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 67889999999999999999864 3 47999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (594)
+++|++++|+++..+.+++.++++.++++.++++.+....+..... ..... ..+.++...... .........+++
T Consensus 89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~ 163 (545)
T PRK08162 89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALA-LLPGP-KPLVIDVDDPEY---PGGRFIGALDYE 163 (545)
T ss_pred HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHh-hCCCC-ceEEEecCcccc---ccCCCcccccHH
Confidence 9999999999999999999999999999999999876655432221 11111 122222111000 000111233566
Q ss_pred HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHH
Q 007672 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281 (594)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 281 (594)
++............+...+++++++|||||||.||+|+++|+++..........+ .+..++++++.+|++|..++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~~~ 238 (545)
T PRK08162 164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-----GMPKHPVYLWTLPMFHCNGW 238 (545)
T ss_pred HHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeeEeccCcHhhhhH
Confidence 6654322111111123456899999999999999999999998876655543333 56788899999999999988
Q ss_pred HHHHHhhhcCcEEEEec-CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc
Q 007672 282 VIEEYFFRRGASVGYYH-GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360 (594)
Q Consensus 282 ~~~l~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (594)
...+.....|++.++.. .++..+++.++++++|++.++|.++..|++........
T Consensus 239 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------------------ 294 (545)
T PRK08162 239 CFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAG------------------------ 294 (545)
T ss_pred HHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccC------------------------
Confidence 76444433444444444 49999999999999999999999999987532111000
Q ss_pred CCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC---------
Q 007672 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--------- 431 (594)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~--------- 431 (594)
+ .+.+.++++|+.+++.+.+.+.+. ++++++.||+||+++.+.......
T Consensus 295 -------------~--------~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~ 352 (545)
T PRK08162 295 -------------I--------DHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWDALPLDE 352 (545)
T ss_pred -------------C--------ccceEEEECCCCCCHHHHHHHHHh-CCceeecccccccCcceeecccccccccCCccc
Confidence 0 145567889999999999988774 999999999999976544432110
Q ss_pred -ccccCccccCcc-CceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcE
Q 007672 432 -MCMVGTAGPVSV-YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509 (594)
Q Consensus 432 -~~~~~~~G~~~~-~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l 509 (594)
.....+.|.+.+ +..++|+|.+++..++.+.+..|||+++|+.++.||+++++.+...|.+|||+|||+|++|+||++
T Consensus 353 ~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~l 432 (545)
T PRK08162 353 RAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYI 432 (545)
T ss_pred hhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCccE
Confidence 011245566554 335778773334333332235799999999999999999999999999999999999999999999
Q ss_pred EEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc--cceee--------eEeee-
Q 007672 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK--VGILE--------WSCWF- 572 (594)
Q Consensus 510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~--~~~~~--------~~~~~- 572 (594)
++.||.+|+|++ +|++|+|.+||++|.++|+|.+|+|++.+++ ++++..... .+..+ ++.|+
T Consensus 433 ~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~ 511 (545)
T PRK08162 433 KIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEIIAHCREHLAGFKV 511 (545)
T ss_pred EEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCCHHHHHHHHHHhcccccC
Confidence 999999999995 8999999999999999999999999997653 333332211 11111 12222
Q ss_pred ----ecCceeeecccccccccccc
Q 007672 573 ----IPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 573 ----~p~~i~~~~~gk~~r~~~~~ 592 (594)
+...||+|++||+.|+.+++
T Consensus 512 P~~~~~~~iP~t~~gK~~r~~l~~ 535 (545)
T PRK08162 512 PKAVVFGELPKTSTGKIQKFVLRE 535 (545)
T ss_pred CcEEEecccCCCCCcCCcHHHHHH
Confidence 23579999999999998764
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-57 Score=493.47 Aligned_cols=478 Identities=21% Similarity=0.246 Sum_probs=364.1
Q ss_pred CCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 007672 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111 (594)
Q Consensus 32 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~ 111 (594)
..+|.+.+++.++.++|+.+++.+|+.+++ +.+...++.+||.||..++.++|++|++.|+++||+|+++++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~ 84 (579)
T PRK09192 11 SSLPRRYADFPTLVEALDYAALGEAGMNFY------DRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETD 84 (579)
T ss_pred ccccccccchhhHHHHHHHhhccCCceEEE------ecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence 345666678899999999999988765543 22333457899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCEEeecCCCCC-------hhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcH
Q 007672 112 PQWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA 184 (594)
Q Consensus 112 ~~~~~~~~A~~~~G~~~v~i~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 184 (594)
++++++++||+++|++++|+++..+ .+++.++++.++++++|+++.....+..... ....+.
T Consensus 85 ~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~----~~~~~~------- 153 (579)
T PRK09192 85 GDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATH----GNPLLH------- 153 (579)
T ss_pred hhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhc----cccccc-------
Confidence 9999999999999999999976432 5889999999999999999876654432211 000111
Q ss_pred HHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhh-hhccccCCC
Q 007672 185 EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKM 263 (594)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~-~~~~~~~~~ 263 (594)
..++..+.... ..........++++++++|||||||.||+|+++|++++..+..... .+ ++
T Consensus 154 ------------~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~ 215 (579)
T PRK09192 154 ------------VLSHAWFKALP-EADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KV 215 (579)
T ss_pred ------------eeehhhhcccC-CCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cC
Confidence 11222222211 1111222346789999999999999999999999999988877655 44 78
Q ss_pred CCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhh
Q 007672 264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337 (594)
Q Consensus 264 ~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 337 (594)
..+|++++++|++|.+++.. ++.++..|+++++.+. ++..+++.+.++++++++.+|..+..+......
T Consensus 216 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~----- 290 (579)
T PRK09192 216 RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNS----- 290 (579)
T ss_pred CCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhcc-----
Confidence 88999999999999999875 5557888999877652 688999999999999877766655554321100
Q ss_pred chHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC------Cce
Q 007672 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFL 411 (594)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~------~~i 411 (594)
.....++++ ++|.+++||+++++.+.+.+.+.++ ..+
T Consensus 291 -----------------------------~~~~~~~l~--------~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~ 333 (579)
T PRK09192 291 -----------------------------KDLAELDLS--------CWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAF 333 (579)
T ss_pred -----------------------------ccccccchh--------hhheeEecCccCCHHHHHHHHHHHHhcCCChhhc
Confidence 001112344 8999999999999999998887763 348
Q ss_pred EeeecccCCCCceeccCCCCc---------------------------cccCccccCccCceEEeeecCCCCCCCCCCCC
Q 007672 412 VQGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPP 464 (594)
Q Consensus 412 ~~~yG~tE~~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~ 464 (594)
++.||+||++..++....... ....++|.++|+++++|+| +++..+ +.++
T Consensus 334 ~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~--~~g~ 410 (579)
T PRK09192 334 MPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPL--PERV 410 (579)
T ss_pred ccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCC--CCCC
Confidence 999999999876654332110 1124789999999999999 665544 4558
Q ss_pred CceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCcc
Q 007672 465 CGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543 (594)
Q Consensus 465 ~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~ 543 (594)
.|||+++|+.++.||+++ ..+.+.+ .+|||+|||+|++ +||+++++||.+|+|++ +|++|+|.+||++|.+||+|.
T Consensus 411 ~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~ 487 (579)
T PRK09192 411 VGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELR 487 (579)
T ss_pred EEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCcc
Confidence 999999999999999999 5566666 7999999999999 89999999999999997 899999999999999999998
Q ss_pred --ceEEeecCCc-----hhhccccc--ccceeee-----------------EeeeecCceeeecccccccccccc
Q 007672 544 --DPQVNVSCSS-----CAMRRRHQ--KVGILEW-----------------SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 544 --~~~V~g~~~~-----~~~~~~~~--~~~~~~~-----------------~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+|+|++++++ .+++.... .....++ ..++.+..||+|.+||++|+++++
T Consensus 488 ~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~ 562 (579)
T PRK09192 488 SGDAAAFSIAQENGEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAAVELVPPHSLPRTSSGKLSRAKAKK 562 (579)
T ss_pred CCcEEEEEeccCCCeeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCceEEEeCCCCcCCCCCcchhHHHHHH
Confidence 8999998774 22322211 1110001 113333589999999999998875
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-56 Score=579.83 Aligned_cols=463 Identities=19% Similarity=0.192 Sum_probs=379.5
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..++.++|.++++++||++|+++. + +++||+||.++++++|+.|++.|+++|++|+|+++|+++++++++|
T Consensus 510 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la 580 (5163)
T PRK12316 510 QRGVHRLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLA 580 (5163)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 468999999999999999999875 4 4799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|++|.++.+++.++++++++++++++......+.. .....++.++....
T Consensus 581 ~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~---------------- 638 (5163)
T PRK12316 581 ILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL------AAGVQVLDLDRPAA---------------- 638 (5163)
T ss_pred HHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc------ccCceEEEecCcch----------------
Confidence 99999999999999999999999999999999998765443211 11112233332110
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
..... ..........++++++++|||||||.||||+++|+++++.+.+....+ ++..++++++..|++|..+
T Consensus 639 --~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~fd~~ 710 (5163)
T PRK12316 639 --WLEGY-SEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-----GLGVGDTVLQKTPFSFDVS 710 (5163)
T ss_pred --hhccC-CCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-----CCCCCCEEEeeCCeehHHH
Confidence 00000 111122334688999999999999999999999999999998887776 7889999999999999999
Q ss_pred HHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 281 ~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
+..++.++..|+++++.+. ++..+++.|+++++|++.++|++++.|.+.... .
T Consensus 711 ~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~--------------------- 767 (5163)
T PRK12316 711 VWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV--A--------------------- 767 (5163)
T ss_pred HHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc--c---------------------
Confidence 9888999999999999753 899999999999999999999999988642100 0
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCC-CCccc
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMCM 434 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~-~~~~~ 434 (594)
++ +++|.+++||+++++++.+.+.+.+ ++.+++.||+||++..++.... .....
T Consensus 768 ----------------~~--------~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 823 (5163)
T PRK12316 768 ----------------SC--------TSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGD 823 (5163)
T ss_pred ----------------cC--------CCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCC
Confidence 01 2899999999999999999886655 7899999999999865444322 22223
Q ss_pred cCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------CCccccCceEEEcCCC
Q 007672 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG 507 (594)
Q Consensus 435 ~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~-------~g~~~TGDlg~~~~dG 507 (594)
..++|+|++|++++|+| +++.. ++.|+.|||+|+|++++.||+++++.+++.|. ++||+|||+|++++||
T Consensus 824 ~~~iG~p~~~~~~~i~d-~~~~~--~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG 900 (5163)
T PRK12316 824 SVPIGRPIANLACYILD-ANLEP--VPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADG 900 (5163)
T ss_pred CCCCccccCCCEEEEEC-CCCCC--CCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCC
Confidence 36899999999999999 66654 45568999999999999999999999999882 3499999999999999
Q ss_pred cEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc--hhhcccccc--cce--------eeeEeeeec-
Q 007672 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS--CAMRRRHQK--VGI--------LEWSCWFIP- 574 (594)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~--~~~~~~~~~--~~~--------~~~~~~~~p- 574 (594)
+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+.. ++++..... ... ..++.|++|
T Consensus 901 ~l~~~GR~d~~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~~~~lva~vv~~~~~~~~~~~l~~~l~~~Lp~y~vP~ 979 (5163)
T PRK12316 901 VIEYAGRIDHQVKL-RGLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGYVVLESEGGDWREALKAHLAASLPEYMVPA 979 (5163)
T ss_pred CEEeecccCCEEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcCCCeEEEEEEccCCCCCCHHHHHHHHHhhCCCccCCC
Confidence 99999999999997 7999999999999999999999999998753 455544321 111 123445555
Q ss_pred -----CceeeeccccccccccccC
Q 007672 575 -----GTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 575 -----~~i~~~~~gk~~r~~~~~~ 593 (594)
+.||+|++||+.|++++.+
T Consensus 980 ~i~~v~~lP~t~~GKidr~~L~~~ 1003 (5163)
T PRK12316 980 QWLALERLPLTPNGKLDRKALPAP 1003 (5163)
T ss_pred eEEEHhhCCCCCCCChhHHhhcCc
Confidence 5689999999999998753
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=524.69 Aligned_cols=473 Identities=18% Similarity=0.177 Sum_probs=364.6
Q ss_pred CcCcHHHHHHHHHHcCCC-CcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd-~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
...++.+.|.++++++|+ +.|+.+. ++ +++||+||.++++++|+.|++ |+++||+|+++++|++++++++
T Consensus 629 ~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~ 699 (1140)
T PRK06814 629 YDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTF 699 (1140)
T ss_pred ccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHH
Confidence 346778888888888864 5666532 22 579999999999999999975 9999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHh-cccccccccccEEEEecCCcHHHHHHHhhCCcce
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 197 (594)
+||+++|++++|+++..+.+++.+++++++++++++++....... ............++.+++..... ...
T Consensus 700 la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~ 771 (1140)
T PRK06814 700 FALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQI--------GLA 771 (1140)
T ss_pred HHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccC--------ChH
Confidence 999999999999999999999999999999999999876543221 01111112223444444321100 000
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhH
Q 007672 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (594)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 277 (594)
..+.+..... ..........++|+++++|||||||.||+|+++|+++.+.+......+ ++..+|++++.+|++|
T Consensus 772 ~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h 845 (1140)
T PRK06814 772 DKIKGLLAGR-FPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPVFH 845 (1140)
T ss_pred HHHHHHhhcc-CCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecchHH
Confidence 0111111111 001111134689999999999999999999999999999888877666 7888999999999999
Q ss_pred HHHHHH-HHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 278 ILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 278 ~~~~~~-~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
.+++.. .+.++..|+++++.+. +...+.+.++++++|++.++|++++.+.+...
T Consensus 846 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~----------------------- 902 (1140)
T PRK06814 846 SFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH----------------------- 902 (1140)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc-----------------------
Confidence 999854 6778999999998764 66778899999999999999999988754210
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccc
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 434 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~ 434 (594)
..++ +++|.+++||+++++++.+.+.+.+++++++.||+||++..+....+... .
T Consensus 903 ----------------~~~~--------~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~-~ 957 (1140)
T PRK06814 903 ----------------PYDF--------RSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHN-K 957 (1140)
T ss_pred ----------------cccc--------cceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCCC-C
Confidence 0112 28999999999999999999998889999999999999987665543332 3
Q ss_pred cCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhc-ccCCccccCceEEEcCCCcEEEEe
Q 007672 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES-IIDGWFHTGDIGQILPNGVVKIID 513 (594)
Q Consensus 435 ~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~-~~~g~~~TGDlg~~~~dG~l~~~G 513 (594)
.+++|+|.+++++++++ .++ .++.|||+++|++++.||+++++..... ..+|||+|||+|++|+||++++.|
T Consensus 958 ~~~vG~p~~g~~~~~~~-~~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~G 1030 (1140)
T PRK06814 958 AGTVGRLLPGIEYRLEP-VPG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKG 1030 (1140)
T ss_pred CCcCCccCCCCeEEEee-cCC------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEe
Confidence 47999999999999988 221 2367999999999999999876533222 268999999999999999999999
Q ss_pred ccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCch------hhccccccccee---------eeEe------ee
Q 007672 514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSSC------AMRRRHQKVGIL---------EWSC------WF 572 (594)
Q Consensus 514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~~------~~~~~~~~~~~~---------~~~~------~~ 572 (594)
|.||+|++ +|++|+|.|||++|.+||.|.|++|++++++. +++. ....+.. .++. +.
T Consensus 1031 R~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~~~P~~i~ 1108 (1140)
T PRK06814 1031 RAKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT-ASDATRAAFLAHAKAAGASELMVPAEII 1108 (1140)
T ss_pred cccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc-CCCcCHHHHHHHHHHcCCCcccCCcEEE
Confidence 99999996 89999999999999999999999999988752 1221 1111111 1223 44
Q ss_pred ecCceeeecccccccccccc
Q 007672 573 IPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 573 ~p~~i~~~~~gk~~r~~~~~ 592 (594)
..+.+|+|++||+.|+++++
T Consensus 1109 ~v~~lP~t~~GKi~r~~L~~ 1128 (1140)
T PRK06814 1109 TIDEIPLLGTGKIDYVAVTK 1128 (1140)
T ss_pred EecCcCCCCCCCCcHHHHHH
Confidence 55678999999999998875
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-56 Score=573.51 Aligned_cols=468 Identities=18% Similarity=0.170 Sum_probs=380.1
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
+...++.++|.++++++||++|+++. ++ .+||+||.++++++|+.|++.|+++|++|+|++++++++++++
T Consensus 3717 ~~~~~~~~~~~~~~~~~p~~~Av~~~---~~------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~ 3787 (4334)
T PRK05691 3717 PLEQSYVRLFEAQVAAHPQRIAASCL---DQ------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMI 3787 (4334)
T ss_pred ccccCHHHHHHHHHHhCCCceEEEcC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34568999999999999999999987 54 6999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhccccccc-ccccEEEEecCCcHHHHHHHhhCCcce
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~ 197 (594)
+|++++|++++|++|.++.+++.++++++++++++++............... .....++..++.
T Consensus 3788 lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 3852 (4334)
T PRK05691 3788 VGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEEV--------------- 3852 (4334)
T ss_pred HHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeeccc---------------
Confidence 9999999999999999999999999999999999999875433211111000 011112221111
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhH
Q 007672 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (594)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 277 (594)
...............+++.||++|||||||.||||+++|+++++.+......+ ++++.++++...++.|
T Consensus 3853 ------~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~f 3921 (4334)
T PRK05691 3853 ------QAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSF 3921 (4334)
T ss_pred ------ccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCch
Confidence 00000111122334688999999999999999999999999999998877776 8899999999999999
Q ss_pred HHHHHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007672 278 ILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (594)
Q Consensus 278 ~~~~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (594)
..+...++.++..|+++++++. ++..+++.++++++|++..+|+++..+...... .
T Consensus 3922 d~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~---~----------------- 3981 (4334)
T PRK05691 3922 DISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ---A----------------- 3981 (4334)
T ss_pred hHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc---c-----------------
Confidence 9999989999999999998764 789999999999999999999999887532100 0
Q ss_pred HHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC-
Q 007672 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE- 431 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~- 431 (594)
+ ++||.+++||+++++++.+.|.+.+ ++.++|.||+||++..++......
T Consensus 3982 --------------------~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~ 4033 (4334)
T PRK05691 3982 --------------------L--------DGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLA 4033 (4334)
T ss_pred --------------------C--------CCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccc
Confidence 1 2899999999999999999887664 789999999999998766543221
Q ss_pred --ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-c-------CCccccCceE
Q 007672 432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I-------DGWFHTGDIG 501 (594)
Q Consensus 432 --~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~-------~g~~~TGDlg 501 (594)
......+|+|++|++++|+| +.+..+| .|..|||+|+|+++++||+++|+.|+++| . ++||+|||+|
T Consensus 4034 ~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p--~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~ 4110 (4334)
T PRK05691 4034 STRGSYLPIGSPTDNNRLYLLD-EALELVP--LGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLA 4110 (4334)
T ss_pred cccCCcCCCCCccCCCEEEEEC-CCCCCCC--CCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcce
Confidence 11225799999999999999 6665555 45899999999999999999999999998 2 3699999999
Q ss_pred EEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCC-----chhhccccccc-c-----------
Q 007672 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCS-----SCAMRRRHQKV-G----------- 564 (594)
Q Consensus 502 ~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~-----~~~~~~~~~~~-~----------- 564 (594)
++++||+|+++||.|++||+ +|++|.+.|||++|.++|+|.+|+|+...+ .++++...... .
T Consensus 4111 ~~~~dG~l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~l~~~ 4189 (4334)
T PRK05691 4111 RRRSDGVLEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVLAQGALLERIKQR 4189 (4334)
T ss_pred eecCCCcEEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccccchHHHHHHHHH
Confidence 99999999999999999998 799999999999999999999999875432 24444432211 0
Q ss_pred -eeeeEeeeecCc------eeeeccccccccccccC
Q 007672 565 -ILEWSCWFIPGT------LFTCSATKLYPLRAEEC 593 (594)
Q Consensus 565 -~~~~~~~~~p~~------i~~~~~gk~~r~~~~~~ 593 (594)
...++.|++|.. +|+|++||+.|+++++.
T Consensus 4190 l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4190 LRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred HHhhCChhhcCcceeecccCCCCCCCcccHhhcCCC
Confidence 123466777664 89999999999999874
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=473.54 Aligned_cols=427 Identities=23% Similarity=0.277 Sum_probs=346.7
Q ss_pred CcHHHHH-HHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 42 NTAWDIF-SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 42 ~tl~~~l-~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
+++.+.+ +.+++++|+++|++.. + +.+||.||.++++++|..|.+.|+.+||+|+++++|+++++++++|
T Consensus 2 ~~~~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la 72 (458)
T PRK09029 2 MIFSDWPWRHWAQVRPQAIALRLN---D------EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA 72 (458)
T ss_pred chhhcChHHHHHHhCCCceeeecC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence 4455555 5668899999999854 3 4799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|+++..+.+++..+++++++++++++++... +. .+.... +
T Consensus 73 ~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--------~~~~~~----------------------~ 121 (458)
T PRK09029 73 LLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FS--------ALTSLH----------------------L 121 (458)
T ss_pred HHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hh--------hccccc----------------------c
Confidence 9999999999999999999999999999999998866422 10 000000 0
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
. . ..........++++++++|||||||.||+|.+||++++..+......+ +...+++++..+|++|.++
T Consensus 122 ~---~---~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~g 190 (458)
T PRK09029 122 Q---L---VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVSG 190 (458)
T ss_pred c---c---ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhhh
Confidence 0 0 000111234678999999999999999999999999999988876666 6788999999999999999
Q ss_pred HHHHHHhhhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc
Q 007672 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360 (594)
Q Consensus 281 ~~~~l~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (594)
+...+.++..|+++++.+. ..+++.+ .++|.+..+|+++..+......
T Consensus 191 ~~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~---------------------------- 238 (458)
T PRK09029 191 QGIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE---------------------------- 238 (458)
T ss_pred hHHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc----------------------------
Confidence 8777778999999998764 5566666 4899999999999887642110
Q ss_pred CCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCcccc
Q 007672 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 440 (594)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~ 440 (594)
..++|.+++||+++++.+.+.+... ++++++.||+||++.......... ..++|.
T Consensus 239 ---------------------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~---~~~~G~ 293 (458)
T PRK09029 239 ---------------------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRADG---LAGVGS 293 (458)
T ss_pred ---------------------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCCCC---CCCCCC
Confidence 0279999999999999999988764 999999999999987655443321 256999
Q ss_pred CccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCceeE
Q 007672 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520 (594)
Q Consensus 441 ~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~ 520 (594)
|+++++++|++ |||+++|+.++.||+++++.+.....+|||+|||+|++| ||++++.||.+|+|+
T Consensus 294 ~~~~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~ 358 (458)
T PRK09029 294 PLPGREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFF 358 (458)
T ss_pred CCCCCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEeccccccee
Confidence 99999999987 999999999999999998887765678999999999999 999999999999999
Q ss_pred cCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccccccee--------eeEeeee------cCceeee
Q 007672 521 ISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGIL--------EWSCWFI------PGTLFTC 580 (594)
Q Consensus 521 ~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~~--------~~~~~~~------p~~i~~~ 580 (594)
+ +|++|+|.+||++|.++|+|.||+|++++++ ++++......... .+..|++ ...+|+|
T Consensus 359 ~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~~~p~t 437 (458)
T PRK09029 359 S-GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAEWLQDKLARFQQPVAYYLLPPELKN 437 (458)
T ss_pred e-CCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCcccCHHHHHHHHHhhchhccCCeEEEEecccccC
Confidence 6 8999999999999999999999999998875 3333322111111 1233444 4668889
Q ss_pred cccccccccccc
Q 007672 581 SATKLYPLRAEE 592 (594)
Q Consensus 581 ~~gk~~r~~~~~ 592 (594)
.+||+.|+.+++
T Consensus 438 ~~gKi~r~~L~~ 449 (458)
T PRK09029 438 GGIKISRQALKE 449 (458)
T ss_pred cCCCcCHHHHHH
Confidence 999999998875
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-55 Score=473.57 Aligned_cols=469 Identities=20% Similarity=0.191 Sum_probs=362.5
Q ss_pred HHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEE
Q 007672 49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC 128 (594)
Q Consensus 49 ~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~ 128 (594)
..+++++||++|+++. ++. +.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~ 76 (511)
T PRK13391 4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY 76 (511)
T ss_pred hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence 4678889999999864 322 579999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhccc
Q 007672 129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK 208 (594)
Q Consensus 129 v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (594)
+++++..+.+++.++++.++++.++++........... .........+..+.... ......+++......
T Consensus 77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 146 (511)
T PRK13391 77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALL-KQCPGVRHRLVLDGDGE---------LEGFVGYAEAVAGLP 146 (511)
T ss_pred eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHH-hcCCCceEEEEecCCCC---------CcccccHHHHhcCCC
Confidence 99999999999999999999999999987655442221 12223333333332111 011223343332211
Q ss_pred ccccccCCCCCCCeEEEEecCCCCCCCceEee--ccHhHHHHH---hhhhhhhccccCCCCCCcEEEEecChhHHHHHHH
Q 007672 209 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVL--THETIATFV---SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI 283 (594)
Q Consensus 209 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~--th~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~ 283 (594)
.......++.++++|||||||.||+|++ +|.++.... ......+ .+..++++++.+|++|.+++..
T Consensus 147 ----~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~ 217 (511)
T PRK13391 147 ----ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRA 217 (511)
T ss_pred ----CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHH
Confidence 1111234567899999999999999995 466654332 2222222 5678899999999999998877
Q ss_pred HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCC
Q 007672 284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362 (594)
Q Consensus 284 ~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (594)
.+.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+.....
T Consensus 218 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------------------- 268 (511)
T PRK13391 218 VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEV----------------------------- 268 (511)
T ss_pred HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhh-----------------------------
Confidence 7788999999998876 9999999999999999999999998876421110
Q ss_pred CCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCc
Q 007672 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442 (594)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~ 442 (594)
.+.+++ +++|.+++||+++++++.+.+.+.+|..+++.||+||++.++...........+++|.|+
T Consensus 269 ------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~ 334 (511)
T PRK13391 269 ------RDKYDL--------SSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAM 334 (511)
T ss_pred ------cccCCc--------cceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcc
Confidence 001112 289999999999999999999998899999999999999876654433333447899999
Q ss_pred cCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cC-CccccCceEEEcCCCcEEEEeccCceeE
Q 007672 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID-GWFHTGDIGQILPNGVVKIIDRKKNLIK 520 (594)
Q Consensus 443 ~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~-g~~~TGDlg~~~~dG~l~~~GR~~d~i~ 520 (594)
++ .++|+| +++.. ++.|+.|||+++|+ ++.||+++++.+...+ .+ +||+|||+|++++||++++.||.+|+|+
T Consensus 335 ~g-~~~i~d-~~~~~--~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~ 409 (511)
T PRK13391 335 FG-DLHILD-DDGAE--LPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMII 409 (511)
T ss_pred cc-eEEEEC-CCCCC--CCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEE
Confidence 99 688888 55544 44568999999999 8899999999998888 44 8999999999999999999999999999
Q ss_pred cCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc-------------eeeeEe------eeecC
Q 007672 521 ISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG-------------ILEWSC------WFIPG 575 (594)
Q Consensus 521 ~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~-------------~~~~~~------~~~p~ 575 (594)
+ +|.+|+|.+||++|.+||.|.+|+|++++++ ++++....... ...++. +....
T Consensus 410 ~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~ 488 (511)
T PRK13391 410 S-GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFED 488 (511)
T ss_pred e-CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcEEEEee
Confidence 6 8999999999999999999999999998764 22222211100 011222 45556
Q ss_pred ceeeecccccccccccc
Q 007672 576 TLFTCSATKLYPLRAEE 592 (594)
Q Consensus 576 ~i~~~~~gk~~r~~~~~ 592 (594)
.+|+|++||+.|+.+++
T Consensus 489 ~~P~t~~gKv~r~~l~~ 505 (511)
T PRK13391 489 ELPRLPTGKLYKRLLRD 505 (511)
T ss_pred cCCCCCccceeHHHHHH
Confidence 78999999999998876
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-55 Score=474.19 Aligned_cols=458 Identities=17% Similarity=0.175 Sum_probs=366.7
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
++++.++|.++++.+|+++|+... + +++||.||.+++.++|..|.+.|+.+|++|+++++|+.+++++++|
T Consensus 1 ~~~~~~~l~~~a~~~p~~~~~~~~---~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a 71 (503)
T PRK04813 1 IMDIIETIEEFAQTQPDFPAYDYL---G------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLG 71 (503)
T ss_pred CchHHHHHHHHHHhCCCceEEEeC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 467899999999999999998764 3 4799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|+++..+.+++.++++..+++++++++...... ... .++ .+
T Consensus 72 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~---------------------~~ 121 (503)
T PRK04813 72 AVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LGI-PVI---------------------TL 121 (503)
T ss_pred HHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------cCC-cEE---------------------eh
Confidence 999999999999999999999999999999999987641100 011 111 11
Q ss_pred HHHHhcc--cccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 201 ~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
+++.... ...........++++++++|||||||.||+|.++|+++...+......+ .+..++++++..|++|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~ 196 (503)
T PRK04813 122 DELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFD 196 (503)
T ss_pred HHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchh
Confidence 1111110 0111112234678899999999999999999999999998887766655 67889999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
.++..++.++..|+++++.+. ++..+++.++++++|++..+|++++.+.........
T Consensus 197 ~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~------------------- 257 (503)
T PRK04813 197 LSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEE------------------- 257 (503)
T ss_pred HhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcc-------------------
Confidence 988778888999999998765 789999999999999999999999876532110000
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCC---
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD--- 430 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~--- 430 (594)
++ +++|.++++|+++++.+.+.+.+.+ ++.+++.||+||++.........
T Consensus 258 ------------------~~--------~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~ 311 (503)
T PRK04813 258 ------------------HL--------PNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEM 311 (503)
T ss_pred ------------------cC--------CCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccc
Confidence 11 2899999999999999999998888 78999999999997654432211
Q ss_pred -CccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--CC--ccccCceEEEcC
Q 007672 431 -EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DG--WFHTGDIGQILP 505 (594)
Q Consensus 431 -~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~--~g--~~~TGDlg~~~~ 505 (594)
......++|.+.++++++|++ +++... +.++.|||+++|+.++.||+++++.+...|. +| ||+|||+|++ .
T Consensus 312 ~~~~~~~~~g~~~~~~~~~i~d-~~~~~~--~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~ 387 (503)
T PRK04813 312 LDQYKRLPIGYAKPDSPLLIID-EEGTKL--PDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-E 387 (503)
T ss_pred cccCCCCcccccCCCCEEEEEC-CCCCCC--CCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-e
Confidence 112235799999999999999 655544 4558999999999999999999999988872 44 9999999999 8
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc-ccce-------------
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ-KVGI------------- 565 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~-~~~~------------- 565 (594)
||++++.||.+|+|++ +|++|+|.+||++|.++|+|++++|++.++. ++++.... .+..
T Consensus 388 ~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 466 (503)
T PRK04813 388 DGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELK 466 (503)
T ss_pred CCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHHHHHHH
Confidence 9999999999999996 8999999999999999999999999986552 33333221 1110
Q ss_pred eeeEe------eeecCceeeecccccccccccc
Q 007672 566 LEWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 566 ~~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
..+.. +.....||+|++||+.|+.+++
T Consensus 467 ~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~ 499 (503)
T PRK04813 467 ERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIE 499 (503)
T ss_pred hhCccccCCeEEEEeccCCCCCCCCCcHHHHHH
Confidence 01222 4445569999999999998764
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-56 Score=469.72 Aligned_cols=400 Identities=19% Similarity=0.207 Sum_probs=319.8
Q ss_pred EeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEc
Q 007672 77 KTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155 (594)
Q Consensus 77 ~Ty~el~~~~~~la~~L~~~Gi-~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~ 155 (594)
+.|.||.+++.++|++|.+.|+ .+|++|+++++|+++++++++||+++|++++|++|.++.+++.++++++++++++++
T Consensus 20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~ 99 (452)
T PRK07445 20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL 99 (452)
T ss_pred cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence 7899999999999999999988 579999999999999999999999999999999999999999999999999999987
Q ss_pred chhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCC
Q 007672 156 DKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDP 235 (594)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p 235 (594)
+...... .... . . ......++++++++|||||||.|
T Consensus 100 ~~~~~~~----------------~~~~----------------~---------~---~~~~~~~~~~~~i~~TSGTTG~P 135 (452)
T PRK07445 100 DQLKLSH----------------PPPL----------------P---------S---QGILPNLETGWIMIPTGGSSGQI 135 (452)
T ss_pred Ccccccc----------------CCCC----------------C---------c---cccCCCCCCcEEEEeCCCCCCCC
Confidence 6532100 0000 0 0 00113468999999999999999
Q ss_pred ceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCe
Q 007672 236 KGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPT 314 (594)
Q Consensus 236 K~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t 314 (594)
|+|++||+++++.+......+ ++.. +++++++|++|.+|+...+.++..|+++++.+. +..........+++|
T Consensus 136 KgV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t 209 (452)
T PRK07445 136 RFAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDF 209 (452)
T ss_pred cEEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCce
Confidence 999999999998887766554 4443 467889999999998877888999999998764 223333444578999
Q ss_pred EEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCC
Q 007672 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394 (594)
Q Consensus 315 ~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~ 394 (594)
++.++|++++.+.+.. .. ++ +++|.+++||++
T Consensus 210 ~~~~vP~~l~~l~~~~---~~-------------------------------------~l--------~~l~~i~~gG~~ 241 (452)
T PRK07445 210 FLSLVPTQLQRLLQLR---PQ-------------------------------------WL--------AQFRTILLGGAP 241 (452)
T ss_pred EEEehHHHHHHHHhhC---hh-------------------------------------hh--------hcceEEEECCcc
Confidence 9999999999886410 00 01 289999999999
Q ss_pred CCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC-ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccC
Q 007672 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK 473 (594)
Q Consensus 395 l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~ 473 (594)
+++++.+.+.+ +++++++.||+||++..+....+.. ....+++|+|+++++++|++ ++.|||+|+|+
T Consensus 242 l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~-----------g~~Gel~v~g~ 309 (452)
T PRK07445 242 AWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA-----------NQTGNITIQAQ 309 (452)
T ss_pred CCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC-----------CCcceEEEeCC
Confidence 99999988876 4999999999999987655443332 12336899999999999872 25799999999
Q ss_pred CcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc
Q 007672 474 TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS 553 (594)
Q Consensus 474 ~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~ 553 (594)
.++.||++++.. .+|||+|||+|++|+||+|++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|+|++++
T Consensus 310 ~~~~gY~~~~~~-----~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~ 383 (452)
T PRK07445 310 SLALGYYPQILD-----SQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDP 383 (452)
T ss_pred ccchhhcCCccC-----CCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCc
Confidence 999999986421 4799999999999999999999999999995 8999999999999999999999999998874
Q ss_pred ------hhhccccc-ccceee--------eE------eeeecCceeeecccccccccccc
Q 007672 554 ------CAMRRRHQ-KVGILE--------WS------CWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 554 ------~~~~~~~~-~~~~~~--------~~------~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
++++.... ..+..+ +. .+.....+|+|++||+.|+.+++
T Consensus 384 ~~g~~~~a~vv~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 443 (452)
T PRK07445 384 HWGEVVTAIYVPKDPSISLEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQ 443 (452)
T ss_pred CCCcEEEEEEEeCCCCCCHHHHHHHHHHhCCcccCCeEEEEecCCCCCCCcccCHHHHHH
Confidence 33332211 111111 12 24555679999999999998765
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-55 Score=472.40 Aligned_cols=483 Identities=20% Similarity=0.212 Sum_probs=369.1
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
.++.++|++.++++||++|+++. + +.+||.||.++++++|++|.+.|+++||+|+|+++|+++++++++||
T Consensus 3 ~~l~~~~~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~ 73 (533)
T PRK07798 3 WNIADLFEAVADAVPDRVALVCG---D------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGA 73 (533)
T ss_pred ccHHHHHHHHHHhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 37999999999999999999874 3 58999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (594)
+++|++++|+++.++.+++.++++++++++++++......+.+.. ......+.++.+++.... ....+..+++
T Consensus 74 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 146 (533)
T PRK07798 74 FKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVL-PRLPKLRTLVVVEDGSGN------DLLPGAVDYE 146 (533)
T ss_pred HhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHh-ccCCCccEEEEecCCccc------ccCCccccHH
Confidence 999999999999999999999999999999999987665554332 233455566666543221 0111244677
Q ss_pred HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhcc----ccCCC------CCCcEEEE
Q 007672 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ----FEDKM------TVDDVYLS 271 (594)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~----~~~~~------~~~~~~~~ 271 (594)
+++....... .... ...+.++++|||||||.||+|+++|+++..........+.. ....+ ..+++++.
T Consensus 147 ~~~~~~~~~~-~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (533)
T PRK07798 147 DALAAGSPER-DFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFP 224 (533)
T ss_pred HHHhccCCcC-CCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEE
Confidence 7665432211 1112 23455799999999999999999999998765443221100 00011 56789999
Q ss_pred ecChhHHHHHHHHHHhhhcCcEEEEec--C-ChHHHHHHHhhhcCeEEEechHHHHH-HHHHHHHHHHhhchHHHHHHHH
Q 007672 272 FLPLAHILDRVIEEYFFRRGASVGYYH--G-DLNALRDDLMELKPTLLAGVPRVFEK-IHEGIKKALEELRPLRRRIFDA 347 (594)
Q Consensus 272 ~~pl~~~~~~~~~l~~l~~G~~~~~~~--~-~~~~~~~~i~~~~~t~l~~~P~~~~~-l~~~~~~~~~~~~~~~~~~~~~ 347 (594)
.+|++|..++...+.++..|+++++.+ . ++..+++.++++++|.+.++|..+.. +.+.+. ..
T Consensus 225 ~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~~------------- 290 (533)
T PRK07798 225 APPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-AR------------- 290 (533)
T ss_pred ecchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-cc-------------
Confidence 999999999988888999999999988 4 89999999999999999999876643 322111 00
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceec
Q 007672 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTV 426 (594)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~ 426 (594)
...++ +++|.+++||+++++++.+++.+.+ +..+++.||+||++.+...
T Consensus 291 ----------------------~~~~~--------~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 340 (533)
T PRK07798 291 ----------------------GPYDL--------SSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSG 340 (533)
T ss_pred ----------------------ccCCC--------CceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeeccccccccccc
Confidence 00011 3899999999999999999999888 8899999999999765554
Q ss_pred cCCCCccccCccc--cCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--C--CccccCce
Q 007672 427 CFPDEMCMVGTAG--PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTGDI 500 (594)
Q Consensus 427 ~~~~~~~~~~~~G--~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~--~--g~~~TGDl 500 (594)
...... ...| .+.++..++|++ +++...+.+....|+++ +++.++.||+++++.+.+.|. + +||+|||+
T Consensus 341 ~~~~~~---~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~ 415 (533)
T PRK07798 341 TVAKGA---VHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDR 415 (533)
T ss_pred CCCCCC---ccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcE
Confidence 322221 2233 788899999999 66665544422226665 556899999999999998883 3 59999999
Q ss_pred EEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc--cccceee-----
Q 007672 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH--QKVGILE----- 567 (594)
Q Consensus 501 g~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~--~~~~~~~----- 567 (594)
|++|+||++++.||.+|+|+. +|++|+|.+||++|.++|.|.+|+|++.++. .++++.. ...+..+
T Consensus 416 ~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l 494 (533)
T PRK07798 416 ARVEADGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHC 494 (533)
T ss_pred EEEcCCCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCCHHHHHHHH
Confidence 999999999999999999995 8999999999999999999999999998764 2222211 1111111
Q ss_pred ---e------EeeeecCceeeecccccccccccc
Q 007672 568 ---W------SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 568 ---~------~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+ ..+.....||+|++||+.|+.+|+
T Consensus 495 ~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~ 528 (533)
T PRK07798 495 RSSLAGYKVPRAIWFVDEVQRSPAGKADYRWAKE 528 (533)
T ss_pred hhhcccCCCCeEEEEcccCCCCCcchhhHHHHhh
Confidence 1 224555679999999999998875
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=454.96 Aligned_cols=485 Identities=20% Similarity=0.234 Sum_probs=382.3
Q ss_pred cCcHHHHHHHHHHcC-CCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 41 LNTAWDIFSMSVQKY-PGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~-pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
.+--+.+++++.+.. +|.+++++. +..++....+||.|+.+++.++|..|++.|+++||+|++++|+.++++++++
T Consensus 63 ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~l 139 (626)
T KOG1175|consen 63 LNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAML 139 (626)
T ss_pred hhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHH
Confidence 344455666665554 889999988 5555555569999999999999999998899999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHh---------ccc---ccccccccEEEEecCCcHHHH
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL---------SPD---CRSAQRLRVMVCFTSLTAEQK 187 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~---------~~~---~~~~~~~~~v~~~~~~~~~~~ 187 (594)
||.++|++.+++-...++.++...++.++++++++.+....... .++ ..........+.+...
T Consensus 140 A~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 214 (626)
T KOG1175|consen 140 ACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR----- 214 (626)
T ss_pred HHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc-----
Confidence 99999999999999999999999999999999999885432211 100 0000011111111111
Q ss_pred HHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHH-HhhhhhhhccccCCCCCC
Q 007672 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVD 266 (594)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~-~~~~~~~~~~~~~~~~~~ 266 (594)
.....|+++++... ...++...+.+|+.+|+|||||||.||++.+++...+-. +......+ ++.++
T Consensus 215 -------~~d~~~~~~~~~a~-~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~-----d~q~~ 281 (626)
T KOG1175|consen 215 -------NRDLFWSLELKKAS-PEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF-----DLQPS 281 (626)
T ss_pred -------cccccHHHHhhhcC-CCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec-----cCCCc
Confidence 11335666655543 333477789999999999999999999999998865444 44433333 88999
Q ss_pred cEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 007672 267 DVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (594)
Q Consensus 267 ~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~ 342 (594)
|++++..-+.++.+.++ .+.+|+.|+++++... ++..+++.+.+|++|+++..|+.++.|.+.......
T Consensus 282 dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~------- 354 (626)
T KOG1175|consen 282 DVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVT------- 354 (626)
T ss_pred ceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcccccc-------
Confidence 99999999999999987 5559999999999765 889999999999999999999999987653222111
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCC-ceEeeecccCCC
Q 007672 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETC 421 (594)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~-~i~~~yG~tE~~ 421 (594)
..+++ +||.+.++|++++++...++.+.++. +|++.||+||+|
T Consensus 355 ----------------------------~~~~~--------sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG 398 (626)
T KOG1175|consen 355 ----------------------------SYSLK--------SLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETG 398 (626)
T ss_pred ----------------------------ccccc--------eEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccC
Confidence 11112 89999999999999999999999987 699999999999
Q ss_pred CceeccCCCC-ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEcc--C-CcccccCCCchhhhhcc---cCCc
Q 007672 422 GPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--K-TLFSGYYKNPDLTRESI---IDGW 494 (594)
Q Consensus 422 ~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g--~-~v~~gY~~~~~~~~~~~---~~g~ 494 (594)
+.+....+.. ...+++.+.|.+++.+.|.| ++++..+... ..|+|+++. | +.+++||+|++.-...+ ..||
T Consensus 399 ~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~ 476 (626)
T KOG1175|consen 399 GICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGY 476 (626)
T ss_pred ceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcccCCce
Confidence 9999888877 66679999999999999999 6666555433 899999988 3 77999999998444443 3899
Q ss_pred cccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc-ee-
Q 007672 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG-IL- 566 (594)
Q Consensus 495 ~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~-~~- 566 (594)
|.|||.+++|+||+++++||.||+|++ +|.++++.|||++|.+||.|.|++|||++++ +++++.+.... -.
T Consensus 477 y~tGD~~~rd~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~ 555 (626)
T KOG1175|consen 477 YFTGDGGRRDEDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQ 555 (626)
T ss_pred EEecCceEEcCCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHH
Confidence 999999999999999999999999996 8999999999999999999999999999997 23322221100 00
Q ss_pred ---ee--------------EeeeecCceeeecccccccccccc
Q 007672 567 ---EW--------------SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 567 ---~~--------------~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
++ ..+.....||+|.+||+.|+-+|.
T Consensus 556 L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrk 598 (626)
T KOG1175|consen 556 LTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRK 598 (626)
T ss_pred HHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHH
Confidence 11 225556679999999999998874
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-55 Score=480.55 Aligned_cols=476 Identities=17% Similarity=0.186 Sum_probs=347.6
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCC---CCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~---~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
+++.++|++++..+|+++|+++. +. ..+..+.+||.||.+++.++|++|.+.| .+||+|+|+++|++++++++
T Consensus 1 ~s~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~ 76 (578)
T PRK05850 1 SSVPSLLRERASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAF 76 (578)
T ss_pred CcHHHHHHHHHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHH
Confidence 36889999999999999999875 31 1233478999999999999999999999 68999999999999999999
Q ss_pred HHHHhcCCEEeecCC---CCChhHHHHHHhhcCceEEEEcchhHHHHhcccccc-cccccEEEEecCCcHHHHHHHhhCC
Q 007672 119 EACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-AQRLRVMVCFTSLTAEQKEMAVQTG 194 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~ 194 (594)
+||+++|++++|+++ ..+.+++.+++++++++++++++.....+....... ......++..+..
T Consensus 77 lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 144 (578)
T PRK05850 77 LGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL------------ 144 (578)
T ss_pred HHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc------------
Confidence 999999999999997 457889999999999999999987665543211100 0011112221110
Q ss_pred cceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhh-ccccCCCCCCcEEEEec
Q 007672 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL-DQFEDKMTVDDVYLSFL 273 (594)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 273 (594)
.+ .. ...........+++++++|||||||.||+|+++|+++++.+....... .........++++++++
T Consensus 145 ----~~---~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (578)
T PRK05850 145 ----DL---DS---PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWL 214 (578)
T ss_pred ----cc---cc---CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEEC
Confidence 00 00 000111234578999999999999999999999999998776554321 10001135678999999
Q ss_pred ChhHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHH-HHHHHHHHHHHHhhchHHHHHHH
Q 007672 274 PLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVF-EKIHEGIKKALEELRPLRRRIFD 346 (594)
Q Consensus 274 pl~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~-~~l~~~~~~~~~~~~~~~~~~~~ 346 (594)
|++|.+++.. .+.+++.|+++++.+. ++..+++.+.++++++. .+|.++ ..+.......
T Consensus 215 pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~------------- 280 (578)
T PRK05850 215 PFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD------------- 280 (578)
T ss_pred CCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh-------------
Confidence 9999999875 7778999999998763 68999999999999865 555544 3332211000
Q ss_pred HHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC------CceEeeecccCC
Q 007672 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTET 420 (594)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~------~~i~~~yG~tE~ 420 (594)
....++++ ++|.+++||+++++++.+++.+.++ ..+++.||+||+
T Consensus 281 ---------------------~~~~~~~~--------~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~ 331 (578)
T PRK05850 281 ---------------------DMAGLDLG--------GVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEA 331 (578)
T ss_pred ---------------------hhcCcchh--------hheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhh
Confidence 00111222 7999999999999999999887762 368999999998
Q ss_pred CCceeccCCCCc------------------------cccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcc
Q 007672 421 CGPTTVCFPDEM------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 476 (594)
Q Consensus 421 ~~~~~~~~~~~~------------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~ 476 (594)
+..+........ .....+|.|. +.+++|+| +++. .+++.|+.|||+|+|++++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd-~~~~-~~~~~g~~Gel~v~g~~~~ 408 (578)
T PRK05850 332 TVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD-PDTC-IECPAGTVGEIWVHGDNVA 408 (578)
T ss_pred hhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc-CCCC-cCCCCCCEEEEEEecCccc
Confidence 765443221100 0011344443 57899998 4322 3455669999999999999
Q ss_pred cccCCCchhhhhccc------------CCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccc
Q 007672 477 SGYYKNPDLTRESII------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (594)
Q Consensus 477 ~gY~~~~~~~~~~~~------------~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~ 544 (594)
.||+++++.+++.|. +|||+|||+|+++ ||+|++.||.+|+|++ +|++|+|.|||++|.+||.+ +
T Consensus 409 ~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~-~ 485 (578)
T PRK05850 409 AGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGG-R 485 (578)
T ss_pred ccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCC-c
Confidence 999999999998882 4799999999997 9999999999999997 89999999999999999985 5
Q ss_pred eEEeecCCc-----hhhcccccc--ccee------ee------------------EeeeecCceeeecccccccccccc
Q 007672 545 PQVNVSCSS-----CAMRRRHQK--VGIL------EW------------------SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 545 ~~V~g~~~~-----~~~~~~~~~--~~~~------~~------------------~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
|+|++++++ ++++..+.. .+.. .+ ..++.+..||+|++||+.|+.+++
T Consensus 486 ~~v~~v~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~ 564 (578)
T PRK05850 486 VAAISVPDDGTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVE 564 (578)
T ss_pred EEEEEecCCCceEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHH
Confidence 888888764 333332111 1100 00 112223579999999999998875
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-55 Score=471.10 Aligned_cols=458 Identities=20% Similarity=0.205 Sum_probs=355.6
Q ss_pred EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEE
Q 007672 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154 (594)
Q Consensus 75 ~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~ 154 (594)
+.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++++++..+.+++.++++.++++++++
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhcccccccccccEEEEecCCcHHHHHHH-----hhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecC
Q 007672 155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA-----VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 229 (594)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 229 (594)
+......+..... ....++............. ........+|+++..... .......+++++++|||
T Consensus 90 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TS 161 (509)
T PRK12406 90 HADLLHGLASALP----AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTS 161 (509)
T ss_pred ccchhhhhhhhhh----cccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECC
Confidence 8876654432221 1111222211100000000 001122345655543221 11233578999999999
Q ss_pred CCCCCCceEeeccHhHHHH---HhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecC-ChHHHH
Q 007672 230 GTSGDPKGVVLTHETIATF---VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALR 305 (594)
Q Consensus 230 GTTG~pK~V~~th~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~-~~~~~~ 305 (594)
||||.||+|+++|...... .......+ ++..++++++.+|++|..+....+.++..|+++++.+. ++..++
T Consensus 162 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 236 (509)
T PRK12406 162 GTTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELL 236 (509)
T ss_pred CCCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHH
Confidence 9999999999877654333 33333333 67888999999999999887777777888999988766 899999
Q ss_pred HHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCce
Q 007672 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385 (594)
Q Consensus 306 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~sl 385 (594)
+.++++++|++.++|.++..|+...... .+..++ +++
T Consensus 237 ~~l~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------------------~~~~~~--------~~l 273 (509)
T PRK12406 237 QLIERHRITHMHMVPTMFIRLLKLPEEV-----------------------------------RAKYDV--------SSL 273 (509)
T ss_pred HHHHHcCCeEEEccHHHHHHHHhCchhh-----------------------------------cccCCC--------Cce
Confidence 9999999999999999999886421110 011122 289
Q ss_pred eEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCC
Q 007672 386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC 465 (594)
Q Consensus 386 r~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~ 465 (594)
|.+++||+++++++.+.+.+.+++.+++.||+||++.+++....+....++++|.++++++++++| +++.. ++.|+.
T Consensus 274 ~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~--~~~g~~ 350 (509)
T PRK12406 274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRP--LPQGEI 350 (509)
T ss_pred eEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCC--CCCCCc
Confidence 999999999999999999998899999999999999877655443333447899999999999999 66544 445689
Q ss_pred ceEEEccCCccc-ccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccc
Q 007672 466 GEVCVRGKTLFS-GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (594)
Q Consensus 466 Gei~v~g~~v~~-gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~ 544 (594)
|||+++|+.++. +|+++++.+...+.+|||+|||+|++|+||++++.||.+|+|++ +|.+|+|.+||++|.++|+|.+
T Consensus 351 Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~ 429 (509)
T PRK12406 351 GEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHD 429 (509)
T ss_pred eEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeE
Confidence 999999998875 89999998887778999999999999999999999999999996 8999999999999999999999
Q ss_pred eEEeecCCc------hhhcccccc--cceee--------eE------eeeecCceeeecccccccccccc
Q 007672 545 PQVNVSCSS------CAMRRRHQK--VGILE--------WS------CWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 545 ~~V~g~~~~------~~~~~~~~~--~~~~~--------~~------~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
|+|++.++. +++++.... .+..+ +. .+.....+|+|++||+.|+++++
T Consensus 430 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~ 499 (509)
T PRK12406 430 CAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRD 499 (509)
T ss_pred EEEEeeeccccCceeEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHH
Confidence 999988774 233332211 11111 12 24556779999999999998875
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=563.96 Aligned_cols=462 Identities=20% Similarity=0.246 Sum_probs=377.3
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
....++.++|.++++++|+++|+++. + +.+||+||.++++++|+.|++.|+++|++|+|++++++++++++
T Consensus 1128 ~~~~~l~~~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~ 1198 (4334)
T PRK05691 1128 PAQAWLPELLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGL 1198 (4334)
T ss_pred CccCCHHHHHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34568999999999999999999876 4 37999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+||+++|++++|++|.++.+++.+++++++++++|++......+... ... .++..+.... .
T Consensus 1199 lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~-----~~~-~~~~~~~~~~-------------~ 1259 (4334)
T PRK05691 1199 LAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA-----EGV-SAIALDSLHL-------------D 1259 (4334)
T ss_pred HHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc-----cCc-eEEeeccccc-------------c
Confidence 99999999999999999999999999999999999988655433110 011 1111111100 0
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
.+ ....+.....++++++++|||||||.||||+++|+++.+.+......+ ++.+++++++..|+.|.
T Consensus 1260 ~~--------~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 1326 (4334)
T PRK05691 1260 SW--------PSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISFD 1326 (4334)
T ss_pred cc--------CCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHH
Confidence 00 011111234678999999999999999999999999999988877766 78899999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
.++..++.++..|+++++.+. ++..+++.|+++++|++.++|++++.+...... .
T Consensus 1327 ~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~--~------------------- 1385 (4334)
T PRK05691 1327 VSVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA--A------------------- 1385 (4334)
T ss_pred HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc--c-------------------
Confidence 998888899999999999753 789999999999999999999999988642110 0
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCC-CCc
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEM 432 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~-~~~ 432 (594)
++ ++||.+++||+++++++.+.+.+.+ ++.+++.||+||++..++.... ...
T Consensus 1386 ------------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~ 1439 (4334)
T PRK05691 1386 ------------------AC--------TSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAED 1439 (4334)
T ss_pred ------------------cC--------CcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeeccccc
Confidence 01 2899999999999999999998876 7899999999999877654322 122
Q ss_pred cccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--------CCccccCceEEEc
Q 007672 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQIL 504 (594)
Q Consensus 433 ~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~--------~g~~~TGDlg~~~ 504 (594)
....++|+|+++++++|+| +++..+ +.|..|||+|+|+++++||+++++.+.+.|. .+||+|||+|+++
T Consensus 1440 ~~~~~iG~p~~~~~~~i~d-~~~~~v--p~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~ 1516 (4334)
T PRK05691 1440 GERSPIGRPLGNVLCRVLD-AELNLL--PPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWN 1516 (4334)
T ss_pred CCCCcccceeCCCEEEEEC-CCCCCC--CCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEEC
Confidence 2236899999999999999 666554 4558999999999999999999999999882 1499999999999
Q ss_pred CCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc-----hhhccccccc--c---e-----eeeE
Q 007672 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS-----CAMRRRHQKV--G---I-----LEWS 569 (594)
Q Consensus 505 ~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~-----~~~~~~~~~~--~---~-----~~~~ 569 (594)
+||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++..+. ++++...... . + ..++
T Consensus 1517 ~dG~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~~~~~~~l~~~l~~~Lp 1595 (4334)
T PRK05691 1517 ADGALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQEAEAERLKAALAAELP 1595 (4334)
T ss_pred CCCCEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCCCCCHHHHHHHHHHhCc
Confidence 99999999999999998 7999999999999999999999999976542 3333322111 1 1 1235
Q ss_pred eeeec------Cceeeecccccccccccc
Q 007672 570 CWFIP------GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 570 ~~~~p------~~i~~~~~gk~~r~~~~~ 592 (594)
.|++| ..+|+|++||+.|+++++
T Consensus 1596 ~y~vP~~~~~~~~lP~t~~GKidr~~L~~ 1624 (4334)
T PRK05691 1596 EYMVPAQLIRLDQMPLGPSGKLDRRALPE 1624 (4334)
T ss_pred cccCCcEEEEccccCCCCCCCcChhhcCc
Confidence 56555 568999999999999875
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-55 Score=469.10 Aligned_cols=453 Identities=20% Similarity=0.222 Sum_probs=356.5
Q ss_pred EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEE
Q 007672 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154 (594)
Q Consensus 75 ~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~ 154 (594)
+.+||.||.+.+.++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.+++++.+++++++
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~ 89 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV 89 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhcccccccc-cccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCC
Q 007672 155 QDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSG 233 (594)
Q Consensus 155 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG 233 (594)
++........... ... ..+.++..+... .....|++...... .......++.++++|||||||
T Consensus 90 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG 153 (502)
T PRK08276 90 SAALADTAAELAA-ELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTG 153 (502)
T ss_pred ccchhhHHHHHhh-hccccccEEEEeCCCC-----------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCC
Confidence 9876654432211 112 344454442211 11234444433211 111235567899999999999
Q ss_pred CCceEeeccHhHHHHHh--hhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecC-ChHHHHHHHhh
Q 007672 234 DPKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLME 310 (594)
Q Consensus 234 ~pK~V~~th~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~ 310 (594)
.||+|+++|.++..... ....... .......+++++++.|++|..++...+.++..|+++++.+. ++..+++.+++
T Consensus 154 ~PK~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~ 232 (502)
T PRK08276 154 RPKGIKRPLPGLDPDEAPGMMLALLG-FGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIER 232 (502)
T ss_pred CCceEEEccCCcchhhhhHHhhhhhh-hcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHH
Confidence 99999999887654332 1111110 00123467899999999999998877788999999988776 89999999999
Q ss_pred hcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEE
Q 007672 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVIS 390 (594)
Q Consensus 311 ~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~ 390 (594)
+++|++.++|+++..+.+.... ..+.++++ ++|.+++
T Consensus 233 ~~~t~~~~~P~~~~~l~~~~~~-----------------------------------~~~~~~~~--------~lr~i~~ 269 (502)
T PRK08276 233 YRVTHSQLVPTMFVRMLKLPEE-----------------------------------VRARYDVS--------SLRVAIH 269 (502)
T ss_pred hCCeEEEehHHHHHHHHhCccc-----------------------------------cCCCCCcc--------cceEEEe
Confidence 9999999999999988642110 01112333 8999999
Q ss_pred ccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEE
Q 007672 391 GGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 470 (594)
Q Consensus 391 ~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v 470 (594)
||++++.++.+++.+.++..+++.||+||++.+++..........+++|.|+ +..++|+| +++.. ++.|+.|||++
T Consensus 270 ~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~--~~~g~~Gel~v 345 (502)
T PRK08276 270 AAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNE--LPPGEIGTVYF 345 (502)
T ss_pred cCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCC--CcCCCceEEEE
Confidence 9999999999999998899999999999999877665544333447899999 88999998 65544 44568999999
Q ss_pred ccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEee
Q 007672 471 RGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNV 549 (594)
Q Consensus 471 ~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g 549 (594)
+|+.++.||+++++.+...+ .+|||+|||+|++++||.+++.||.+|+|++ +|++|++.+||++|.++|+|.+|+|++
T Consensus 346 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~ 424 (502)
T PRK08276 346 EMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFG 424 (502)
T ss_pred ECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEe
Confidence 99999999999999999988 5599999999999999999999999999996 899999999999999999999999998
Q ss_pred cCCc------hhhcccccccce-------------eee------EeeeecCceeeecccccccccccc
Q 007672 550 SCSS------CAMRRRHQKVGI-------------LEW------SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 550 ~~~~------~~~~~~~~~~~~-------------~~~------~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
..++ +++++.+..... ..+ ..+.....+|+|++||+.|+++++
T Consensus 425 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~ 492 (502)
T PRK08276 425 VPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRD 492 (502)
T ss_pred CCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHH
Confidence 8764 334443221110 011 235556789999999999999886
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=471.97 Aligned_cols=427 Identities=18% Similarity=0.124 Sum_probs=312.9
Q ss_pred eCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH------HHHhcccccccccccEEEEecC
Q 007672 108 GANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV------KELLSPDCRSAQRLRVMVCFTS 181 (594)
Q Consensus 108 ~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~v~~~~~ 181 (594)
++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++... ..+.. +... .....++....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~~ 78 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSK-VVEA-APAKAIVLPAA 78 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhh-hhhc-ccceEEEEecc
Confidence 5899999999999999999999999999999999999999999999986421 11111 1101 11222222211
Q ss_pred CcHHHHHHHhhCCcceeeHHHHHhcccc------cccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhh
Q 007672 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKV------NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255 (594)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~ 255 (594)
... . .........+|++++..... .........++++++++|||||||.||||++||.+++.........
T Consensus 79 ~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~ 154 (499)
T PLN03051 79 GEP-V---AVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH 154 (499)
T ss_pred Ccc-c---CCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence 100 0 00000012346665532110 0111112356899999999999999999999999988766544444
Q ss_pred hccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHH
Q 007672 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333 (594)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~ 333 (594)
+ ++..+|++++.+|++|.+++...+.++..|+++++.+. ++..+++.|+++++|++.++|+++..|.+....
T Consensus 155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~- 228 (499)
T PLN03051 155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAF- 228 (499)
T ss_pred c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcc-
Confidence 3 67888999999999999887767778999999998764 788999999999999999999999988642100
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc--CCce
Q 007672 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFL 411 (594)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~--~~~i 411 (594)
.....+++ +||.+++||+++++++.+++.+.+ ++.+
T Consensus 229 ----------------------------------~~~~~~~~--------~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~ 266 (499)
T PLN03051 229 ----------------------------------AMEGLDWS--------KLRVFASTGEASAVDDVLWLSSVRGYYKPV 266 (499)
T ss_pred ----------------------------------ccccCCch--------hheEEEecCCCCCHHHHHHHHHhcccccee
Confidence 00011222 899999999999999998887633 4789
Q ss_pred EeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCc--ccccCCCchhhhhc
Q 007672 412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL--FSGYYKNPDLTRES 489 (594)
Q Consensus 412 ~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v--~~gY~~~~~~~~~~ 489 (594)
++.||+||++..............+++|.|.++++++|+| +++..++.|.++.|||+++|+.+ +.||++++. + +.
T Consensus 267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~-~~ 343 (499)
T PLN03051 267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-D-KV 343 (499)
T ss_pred EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-c-ce
Confidence 9999999987544332222222347899999999999999 77776665544689999999977 579997653 3 33
Q ss_pred ccCC----------ccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhc-CCCccceEEeecCCc-----
Q 007672 490 IIDG----------WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV-APIIEDPQVNVSCSS----- 553 (594)
Q Consensus 490 ~~~g----------~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~-~p~V~~~~V~g~~~~----- 553 (594)
+.+| ||+|||+|++|+||+|++.||.||+||+ +|++|+|.|||++|.+ ||+|.||+|+|++|+
T Consensus 344 ~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~ 422 (499)
T PLN03051 344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPE 422 (499)
T ss_pred eeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCce
Confidence 4344 6899999999999999999999999995 8999999999999996 999999999998773
Q ss_pred --hhhc---ccc--c-ccceee------------------eEeeeecCceeeecccccccccccc
Q 007672 554 --CAMR---RRH--Q-KVGILE------------------WSCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 554 --~~~~---~~~--~-~~~~~~------------------~~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
++++ +.+ . ..+..+ .+.+...+.||+|++||++|+.+|+
T Consensus 423 ~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~ 487 (499)
T PLN03051 423 LLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRD 487 (499)
T ss_pred EEEEEEEcceecccccccchHHHHHHHHHHHHhhcCCccCCceEEEcCCCCCCCCccHHHHHHHH
Confidence 3333 211 1 111111 1235556789999999999999875
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-55 Score=458.99 Aligned_cols=402 Identities=30% Similarity=0.456 Sum_probs=313.3
Q ss_pred HHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCE
Q 007672 48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127 (594)
Q Consensus 48 l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~ 127 (594)
|.++|+++||++|+++. +. +.+||+||.++++++|..|+++|+++|++|+|+++|+++++++++||+++|++
T Consensus 1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 67899999999999971 12 79999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCChhHHHHHHhhcCceEEEE----cchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHH
Q 007672 128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF 203 (594)
Q Consensus 128 ~v~i~~~~~~~~l~~~l~~~~~~~ii~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (594)
++|++|.++.+++.++++.++++++|+ +......+.... ........++.++..... ..+.+
T Consensus 73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~ 138 (417)
T PF00501_consen 73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIF-KQEDPSSSIIILDRDDLP-------------KKEAL 138 (417)
T ss_dssp EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHH-TTSTTTEEEEEESHSSCT-------------TCHHH
T ss_pred ccccccccccccccccccccceeEEEEeccccccccccchhhh-cccccccccccccccccc-------------ccccc
Confidence 999999999999999999999999997 222222121111 111233445555432210 00011
Q ss_pred HhcccccccccCC-CCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHH-
Q 007672 204 LHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR- 281 (594)
Q Consensus 204 ~~~~~~~~~~~~~-~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~- 281 (594)
.......... .+ ..++++++++|||||||.||+|.++|+++++.+..+. +... .+++ |++++.+|++|.+++
T Consensus 139 ~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~~ 212 (417)
T PF00501_consen 139 KSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEY-FGLG--DRILSFLPLSHIFGLI 212 (417)
T ss_dssp HHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHT-TTTT--TEEEESS-TTSHHHHH
T ss_pred cccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccc--cccc-cccC--ceEEeecccccccccc
Confidence 1000000000 00 0568999999999999999999999999999988865 1111 1233 599999999999999
Q ss_pred HHHHHhhhcCcEEEEecC-C---hHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 007672 282 VIEEYFFRRGASVGYYHG-D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (594)
Q Consensus 282 ~~~l~~l~~G~~~~~~~~-~---~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (594)
...+.++..|+++++++. . +..+++.++++++|+++++|.+++.+++..... ..
T Consensus 213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~--------------------- 270 (417)
T PF00501_consen 213 SALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TK--------------------- 270 (417)
T ss_dssp HHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HH---------------------
T ss_pred ccccccccccccccccccccccccccchhccccccccccccccccccccccccccc-cc---------------------
Confidence 568889999999999987 2 467899999999999999999999987521111 00
Q ss_pred hccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCC-ceEeeecccCCCCceeccC-CCCcccc
Q 007672 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCF-PDEMCMV 435 (594)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~-~i~~~yG~tE~~~~~~~~~-~~~~~~~ 435 (594)
....+++ +||.++++|+++++++.+.+++.++. .|++.||+||++.+++... .......
T Consensus 271 -----------~~~~~l~--------~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 331 (417)
T PF00501_consen 271 -----------ISKKDLS--------SLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKP 331 (417)
T ss_dssp -----------GTTTTGT--------T-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSST
T ss_pred -----------ccccccc--------cccccccccccCChhhccccccccccccceecccccccceeeeccccccccccc
Confidence 0001222 79999999999999999999999887 9999999999999987663 3333344
Q ss_pred CccccCccCceEEeeecCC-CCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-CCccccCceEEEcCCCcEEEEe
Q 007672 436 GTAGPVSVYSELRLEEVPE-MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIID 513 (594)
Q Consensus 436 ~~~G~~~~~~~~~i~d~~~-~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~-~g~~~TGDlg~~~~dG~l~~~G 513 (594)
+++|.|+++++++|+| ++ +..+ +.|+.|||+|+|+.++.||+++++.+.+.|. +|||+|||+|++|+||+|+++|
T Consensus 332 ~~~G~~~~~~~~~ivd-~~~~~~~--~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~G 408 (417)
T PF00501_consen 332 GSVGKPLPGVEVKIVD-PNTGEPL--PPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILG 408 (417)
T ss_dssp TSEBEESTTEEEEEEC-TTTSSBE--STTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEE
T ss_pred cccccccccccccccc-ccccccc--cccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEE
Confidence 7899999999999999 44 4444 5668999999999999999999999999995 4899999999999999999999
Q ss_pred ccCceeEc
Q 007672 514 RKKNLIKI 521 (594)
Q Consensus 514 R~~d~i~~ 521 (594)
|.||+||+
T Consensus 409 R~~~~i~~ 416 (417)
T PF00501_consen 409 RSDDMIKV 416 (417)
T ss_dssp EGSCEEEE
T ss_pred eeCCEEEe
Confidence 99999996
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=470.91 Aligned_cols=467 Identities=18% Similarity=0.208 Sum_probs=356.7
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
+.++.+.|..+|+..|+.+++... +. .+.+||.||.++++++|++|.+.|+++||+|+|+++|+++++++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la 73 (545)
T PRK07768 1 MSRFTEKMYANARTSPRGMVTGEP---DA----PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQG 73 (545)
T ss_pred CchHHHHHHHHhhCCCcceEEecC---CC----ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHH
Confidence 346889899999999999988654 43 26899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHH-------HHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhC
Q 007672 121 CNALSLICVPLYDTLGPGAV-------NFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l-------~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 193 (594)
|+++|++++++++..+.+++ .++++.++++.+++++........ ... .
T Consensus 74 ~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~--~---------------------- 128 (545)
T PRK07768 74 LWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPV-LEE--K---------------------- 128 (545)
T ss_pred HHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhh-hcc--c----------------------
Confidence 99999999999988776544 456777899999998765432211 100 0
Q ss_pred CcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCC-cEEEEe
Q 007672 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD-DVYLSF 272 (594)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 272 (594)
......++++..... .......++++++++|||||||.||+|+++|++++..+......+ ++..+ |+++++
T Consensus 129 ~~~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~ 200 (545)
T PRK07768 129 GIRVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSW 200 (545)
T ss_pred CCceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEe
Confidence 011234444443221 122344679999999999999999999999999999887766655 56665 899999
Q ss_pred cChhHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007672 273 LPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (594)
Q Consensus 273 ~pl~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (594)
+|++|..++.. ++.++..|++++++.. ++..+.+.+++++++++..+|..+..+.+.......
T Consensus 201 ~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~----------- 269 (545)
T PRK07768 201 LPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAK----------- 269 (545)
T ss_pred CCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhcccc-----------
Confidence 99999999875 5567899999988753 677889999999999998888877766543211100
Q ss_pred HHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHh---cCC---ceEeeecccCC
Q 007672 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTET 420 (594)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~---~~~---~i~~~yG~tE~ 420 (594)
....+++ ++|.++++|+++++++.+++.+. +|. .+++.||+||+
T Consensus 270 ----------------------~~~~~~~--------~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~ 319 (545)
T PRK07768 270 ----------------------PGAFDLS--------SLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEA 319 (545)
T ss_pred ----------------------ccCCCch--------heeeEEeccCCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 0011223 89999999999999999988764 455 49999999999
Q ss_pred CCceeccCCCC-------------------------ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCc
Q 007672 421 CGPTTVCFPDE-------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475 (594)
Q Consensus 421 ~~~~~~~~~~~-------------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v 475 (594)
+..+.....+. .....++|+|+++++++|++ +++..+ +.++.|||+++|+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~--~~g~~Gel~v~~~~~ 396 (545)
T PRK07768 320 TLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVL--PPRGVGVIELRGESV 396 (545)
T ss_pred ceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCC--CCCCEEEEEEccCcc
Confidence 87655433221 11235899999999999999 666544 455899999999999
Q ss_pred ccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecC--Cc
Q 007672 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSC--SS 553 (594)
Q Consensus 476 ~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~--~~ 553 (594)
+.||++++........+|||+|||+|++|+||+++++||.+|+|++ +|++|+|.+||+.|.++|+|.+++|+++. +.
T Consensus 397 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~ 475 (545)
T PRK07768 397 TPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNAVAVRLDAG 475 (545)
T ss_pred cccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccccceEEEEEecCC
Confidence 9999987665554457899999999999999999999999999997 79999999999999999999998887643 21
Q ss_pred -----hhh-ccccccccee------------------ee---EeeeecCceeeecccccccccccc
Q 007672 554 -----CAM-RRRHQKVGIL------------------EW---SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 554 -----~~~-~~~~~~~~~~------------------~~---~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.++ ++.....+.. .. ..+..++.||+|++||++|+.+++
T Consensus 476 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~ 541 (545)
T PRK07768 476 HSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAE 541 (545)
T ss_pred CCceEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHH
Confidence 222 1111100000 00 112223589999999999999876
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-54 Score=455.58 Aligned_cols=416 Identities=24% Similarity=0.308 Sum_probs=337.3
Q ss_pred eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcch
Q 007672 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (594)
Q Consensus 78 Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (594)
||+||.++++++|..|.+.|+++||+|+|+++|+++++++++||+++|++++++++..+.+++.+++++.+++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCce
Q 007672 158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKG 237 (594)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~ 237 (594)
..... + . ...+..+................+++++++|||||||.||+
T Consensus 81 ~~~~~-------------~-~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~ 128 (436)
T TIGR01923 81 LEEKD-------------F-Q------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA 128 (436)
T ss_pred ccccc-------------e-e------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence 32110 0 0 00111111111011111223457889999999999999999
Q ss_pred EeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecCChHHHHHHHhhhcCeEEE
Q 007672 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317 (594)
Q Consensus 238 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~ 317 (594)
|.++|+++...+......+ ++.++|++++.+|++|..++...+.++..|+++++.+.. ..+++.++++++|++.
T Consensus 129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~ 202 (436)
T TIGR01923 129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHIS 202 (436)
T ss_pred EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEE
Confidence 9999999999888877766 788999999999999999987788889999999988643 4999999999999999
Q ss_pred echHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCH
Q 007672 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397 (594)
Q Consensus 318 ~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~ 397 (594)
++|+++..+.+.... ..++|.++++|+++++
T Consensus 203 ~~P~~l~~l~~~~~~-------------------------------------------------~~~l~~~~~~G~~~~~ 233 (436)
T TIGR01923 203 LVPTQLNRLLDEGGH-------------------------------------------------NENLRKILLGGSAIPA 233 (436)
T ss_pred eHHHHHHHHHhCcCC-------------------------------------------------CCceEEEEECCCCCCH
Confidence 999999888642110 0279999999999999
Q ss_pred HHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCccc
Q 007672 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477 (594)
Q Consensus 398 ~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~ 477 (594)
++.+.+.. +++.+++.||+||++...............++|.|++++++++.. ++. ++.|||+++|+.++.
T Consensus 234 ~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~-------~~~Gel~v~~~~~~~ 304 (436)
T TIGR01923 234 PLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNK-------EGHGEIMVKGANLMK 304 (436)
T ss_pred HHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCC-------CCceEEEEECCccch
Confidence 99998876 499999999999998866554433322223589999999999844 222 157999999999999
Q ss_pred ccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc----
Q 007672 478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS---- 553 (594)
Q Consensus 478 gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~---- 553 (594)
||+++++.+...+.+|||+|||+|+++.||++++.||.+|+|++ +|++|++.+||++|.++|.|.+++|++.++.
T Consensus 305 gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 383 (436)
T TIGR01923 305 GYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQ 383 (436)
T ss_pred hhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCC
Confidence 99998888877778899999999999999999999999999996 8999999999999999999999999988764
Q ss_pred --hhhccccccccee--------ee------EeeeecCceeeecccccccccc
Q 007672 554 --CAMRRRHQKVGIL--------EW------SCWFIPGTLFTCSATKLYPLRA 590 (594)
Q Consensus 554 --~~~~~~~~~~~~~--------~~------~~~~~p~~i~~~~~gk~~r~~~ 590 (594)
.+++......+.. .+ ..+.....||+|++||+.|+++
T Consensus 384 ~~~~~v~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 384 VPVAYIVSESDISQAKLIAYLTEKLAKYKVPIAFEKLDELPYNASGKILRNQL 436 (436)
T ss_pred eeEEEEEECCCCCHHHHHHHHHHhhhCCCCCeEEEEecCCCCCCCCceecccC
Confidence 2333322221111 11 2244557799999999999875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-54 Score=492.12 Aligned_cols=471 Identities=13% Similarity=0.093 Sum_probs=342.3
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
....++.++|.++++++||++|+++. + +.+||.||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~---~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~ 514 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFD---G------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI 514 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45568999999999999999999875 3 47999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+||+++|++++|++|. +++.++++.++++++|++......+... ...+++++....... .........
T Consensus 515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~--~~~~~~~~~ 582 (994)
T PRK07868 515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDL--DLPDDADVI 582 (994)
T ss_pred HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCccccc--cCCcchhhh
Confidence 9999999999999984 6799999999999999987766544221 134444432110000 000000011
Q ss_pred eHHHHHhcccccc--cccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChh
Q 007672 199 SWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (594)
Q Consensus 199 ~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 276 (594)
+++++.......+ ....+..++++++++|| ||||.||++.++|.++..........+ ++..+|++++.+|++
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~ 656 (994)
T PRK07868 583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLH 656 (994)
T ss_pred hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChH
Confidence 1111111000000 01112236899999998 588888888888877665544433333 678899999999999
Q ss_pred HHHHHHHHHH-hhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 277 HILDRVIEEY-FFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 277 ~~~~~~~~l~-~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
|.+++...+. ++..|+++++.+. ++..+++.|+++++|+++++|++++.|++.....
T Consensus 657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~--------------------- 715 (994)
T PRK07868 657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFV--------------------- 715 (994)
T ss_pred HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCc---------------------
Confidence 9999976554 4556666666554 9999999999999999999999999886421000
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC-CceEeeecccCCCCceeccCCCCcc
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMC 433 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~-~~i~~~yG~tE~~~~~~~~~~~~~~ 433 (594)
..++ ++||.++ |+.+++++.+.+.+.++ +++++.||+||++...... . ..
T Consensus 716 ----------------~~~~--------~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~-~--~~ 766 (994)
T PRK07868 716 ----------------LHGN--------HPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV-S--GA 766 (994)
T ss_pred ----------------cCCC--------CceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccccc-C--CC
Confidence 0011 2789776 34499999999998885 8999999999987654322 1 12
Q ss_pred ccCccccCccCc-eEEeeec----------CCCCCCCCCCCCCceEEEccCCcccccCCCchhhh--hcc--cCCccccC
Q 007672 434 MVGTAGPVSVYS-ELRLEEV----------PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR--ESI--IDGWFHTG 498 (594)
Q Consensus 434 ~~~~~G~~~~~~-~~~i~d~----------~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~--~~~--~~g~~~TG 498 (594)
..+++|+|++++ +++|++. +++....++.|+.|||+++++.. + +++.+. ..| .+|||+||
T Consensus 767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TG 841 (994)
T PRK07868 767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTE 841 (994)
T ss_pred CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEecc
Confidence 347999999998 6776521 11211234567899999999853 3 344332 234 37999999
Q ss_pred ceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc-----hhhcccc--ccccee-----
Q 007672 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS-----CAMRRRH--QKVGIL----- 566 (594)
Q Consensus 499 Dlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~-----~~~~~~~--~~~~~~----- 566 (594)
|+|++|+||+|+|+||.||+||+ +|.+|+|.|||++|.+||.|.+|+|++++++ ++++... ..++..
T Consensus 842 Dlg~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~ 920 (994)
T PRK07868 842 YLFRRDDDGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEA 920 (994)
T ss_pred ceEEEcCCCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHH
Confidence 99999999999999999999996 7889999999999999999999999998874 3333322 111111
Q ss_pred --eeEeeeec------Cceeeecccccccccccc
Q 007672 567 --EWSCWFIP------GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 567 --~~~~~~~p------~~i~~~~~gk~~r~~~~~ 592 (594)
+++.|++| ..||+|++||+.|.++++
T Consensus 921 l~~l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~ 954 (994)
T PRK07868 921 LASLPVGLGPDIVHVVPEIPLSATYRPTVSALRA 954 (994)
T ss_pred HHhCCCCcCCeEEEEeCCCCCCccccEehHHHHh
Confidence 23344444 579999999999988764
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=460.61 Aligned_cols=470 Identities=19% Similarity=0.263 Sum_probs=373.6
Q ss_pred CCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch
Q 007672 33 GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP 112 (594)
Q Consensus 33 ~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~ 112 (594)
.+|.. +...|+.++|.+.++++|+++|+... . ..++++++||+|+.+++.++|++|.++|+++||+|+|+++|++
T Consensus 419 ~~~~~-~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~ 493 (1452)
T PTZ00297 419 EYNPL-AGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASR 493 (1452)
T ss_pred cCCCc-ccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH
Confidence 34433 45569999999999999999998642 1 2355688999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcH-HHHHHHh
Q 007672 113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA-EQKEMAV 191 (594)
Q Consensus 113 ~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~ 191 (594)
+|+++.+||+++|++++|+++ +.+++.+++++++++++|++.+....+.+... ..++.|+++++... .......
T Consensus 494 Ewvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~ 568 (1452)
T PTZ00297 494 NIVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVAR 568 (1452)
T ss_pred HHHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccc
Confidence 999999999999999999976 46789999999999999999887776654322 36888988864211 0000000
Q ss_pred hCCcceeeHHHHHhccccccc-ccCCCCCCCeEEEEe---cCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCc
Q 007672 192 QTGIKPYSWDEFLHLGKVNEM-EILPPQPFNICTIMY---TSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267 (594)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~---TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~ 267 (594)
..+....+|++++..+..... ......++|++.++| ||||||.||||++||+|+++.+..+.... .......+|
T Consensus 569 ~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~--~~~~~~~~D 646 (1452)
T PTZ00297 569 DLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTG--VLPSSFKKH 646 (1452)
T ss_pred cCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhc--cccCCCCCC
Confidence 112346779999886632111 122346788999986 99999999999999999999988765421 001345789
Q ss_pred EEEEecChhHHHHHHHHHHhhhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 007672 268 VYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (594)
Q Consensus 268 ~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (594)
++++++||+|+++....+.+++.|+++... ++..+++.|++++||+++++|.+|+.+......+....+++.++++++
T Consensus 647 ~~Ls~LPLaHI~er~~~~~~l~~G~~I~~~--d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~ 724 (1452)
T PTZ00297 647 LMVHFTPFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFER 724 (1452)
T ss_pred EEEEechHHHHHHHHHHHHHHHcCCEEEeC--CHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999999977777789999998753 789999999999999999999999999988888888778899999999
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccC--CCCHHHHHHHHHhcCCceEeeecccCCCCcee
Q 007672 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA--PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 425 (594)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~--~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~ 425 (594)
+.+.+...+..+ .....+++.+.++++++.+|.++|.+++||+ +++..+.. ++.+..+||+||.. +
T Consensus 725 A~~~k~~~~~~g---~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~ 792 (1452)
T PTZ00297 725 AFQLRSRLINIH---RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---F 792 (1452)
T ss_pred HHHHHHHHHhcC---CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---e
Confidence 988876655543 2345688999999999999999999999983 55543332 67788999999942 3
Q ss_pred ccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcC
Q 007672 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505 (594)
Q Consensus 426 ~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~ 505 (594)
.+.++... ..|.|+|+++++|.+.++.+.. +..|||+++ |+++|+.|++. .+||+ +
T Consensus 793 ~~~~~~~~---~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr-------~~kdpe~T~e~-~~gW~---------~ 848 (1452)
T PTZ00297 793 LPSEGVFC---VDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLA-------KKGEPRRTLPI-AAQWK---------R 848 (1452)
T ss_pred ecCCCCcc---cCCeecCceEEEEcccccccCC----CCCCeEEEE-------ECCChHHHHHh-hCcCc---------c
Confidence 34343322 2399999999999984443322 136999995 45889988873 46775 6
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCC
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCS 552 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (594)
||+|+|.||+||+|+.++|++|+|..||+++..+|.|.+++|+|...
T Consensus 849 dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~ 895 (1452)
T PTZ00297 849 DRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPS 895 (1452)
T ss_pred CCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCC
Confidence 99999999999999999999999999999999999999999999754
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=430.41 Aligned_cols=389 Identities=25% Similarity=0.331 Sum_probs=323.9
Q ss_pred eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcc
Q 007672 78 TYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (594)
Q Consensus 78 Ty~el~~~~~~la~~L~~-~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~ 156 (594)
||.||.+.++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++.++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCc
Q 007672 157 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPK 236 (594)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK 236 (594)
.....+.... ..+....... ...................+++++++|||||||.||
T Consensus 81 ~~~~~~~~~~-------~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK 136 (408)
T TIGR01733 81 ALASRLAGLV-------LPIILVDPLE-----------------LAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK 136 (408)
T ss_pred chhhhccccC-------CceEEechhh-----------------hhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence 7665442211 1111211110 000000000011111135789999999999999999
Q ss_pred eEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhc
Q 007672 237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELK 312 (594)
Q Consensus 237 ~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~ 312 (594)
+|.+||++++..+..+...+ .+..++++++..|++|.+++...+.++..|+++++++. .+..+.+.+++++
T Consensus 137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (408)
T TIGR01733 137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP 211 (408)
T ss_pred EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence 99999999999998887766 77889999999999999998888899999999998776 2678999999999
Q ss_pred CeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEcc
Q 007672 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 392 (594)
Q Consensus 313 ~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G 392 (594)
+|.+.++|.+++.+.+... .. + ++||.+++||
T Consensus 212 ~t~l~~~p~~~~~l~~~~~---~~-------------------------------------~--------~~l~~v~~~g 243 (408)
T TIGR01733 212 VTVLNLTPSLLALLAAALP---PA-------------------------------------L--------ASLRLVILGG 243 (408)
T ss_pred ceEEEeCHHHHHHHHHhhh---hc-------------------------------------c--------cCceEEEEeC
Confidence 9999999999999876432 11 1 2899999999
Q ss_pred CCCCHHHHHHHHHhcC-CceEeeecccCCCCceeccCCCCc---c-ccCccccCccCceEEeeecCCCCCCCCCCCCCce
Q 007672 393 APLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEM---C-MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE 467 (594)
Q Consensus 393 ~~l~~~~~~~~~~~~~-~~i~~~yG~tE~~~~~~~~~~~~~---~-~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 467 (594)
+++++++.+.+.+.++ +.+++.||+||++.++........ . ...++|.|+++++++|++ +++. +++.|+.||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~--~~~~g~~Ge 320 (408)
T TIGR01733 244 EALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDLR--PVPVGVVGE 320 (408)
T ss_pred ccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCCC--CCCCCCceE
Confidence 9999999999999887 899999999999987754322211 1 147899999999999999 5544 445668999
Q ss_pred EEEccCCcccccCCCchhhhhcccC-------C--ccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhc
Q 007672 468 VCVRGKTLFSGYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538 (594)
Q Consensus 468 i~v~g~~v~~gY~~~~~~~~~~~~~-------g--~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~ 538 (594)
|+++|+.++.||+++++.+.+.|.. | ||+|||+|++|+||++++.||.+|+|++ +|++|+|.+||++|.+
T Consensus 321 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~ 399 (408)
T TIGR01733 321 LYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLR 399 (408)
T ss_pred EEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHHHHhc
Confidence 9999999999999999999888722 2 9999999999999999999999999996 8999999999999999
Q ss_pred CCCccceEE
Q 007672 539 APIIEDPQV 547 (594)
Q Consensus 539 ~p~V~~~~V 547 (594)
+|+|.||+|
T Consensus 400 ~~~v~~~~v 408 (408)
T TIGR01733 400 HPGVREAVV 408 (408)
T ss_pred CcchhhhcC
Confidence 999999986
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=432.52 Aligned_cols=381 Identities=14% Similarity=0.092 Sum_probs=315.5
Q ss_pred EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEE
Q 007672 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154 (594)
Q Consensus 75 ~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~ 154 (594)
+++||.||.++++++|++|. .|+++|++|+|+++|+++++++++||+++|++++|+++..+.+++..++++++++++++
T Consensus 7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~ 85 (414)
T PRK08308 7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY 85 (414)
T ss_pred ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence 58999999999999999985 68999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCC
Q 007672 155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD 234 (594)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 234 (594)
++.... .. . .....++++++++|||||||.
T Consensus 86 ~~~~~~------------------~~------------------~--------------~~~~~~~~~~~i~~TSGtTG~ 115 (414)
T PRK08308 86 GESDFT------------------KL------------------E--------------AVNYLAEEPSLLQYSSGTTGE 115 (414)
T ss_pred cCcccc------------------cc------------------c--------------CCCCCCCCceEEEECCCCCCC
Confidence 763110 00 0 011346789999999999999
Q ss_pred CceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhc
Q 007672 235 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELK 312 (594)
Q Consensus 235 pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~ 312 (594)
||+|++||+++.+.+..+...+ ....+++++..+|++|.+++.. ++.++..|+++++.+. ++..+++.+++++
T Consensus 116 PKgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~ 190 (414)
T PRK08308 116 PKLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTP 190 (414)
T ss_pred CcEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhC
Confidence 9999999999999888776665 6778899999999999999865 6778999999988776 8999999999999
Q ss_pred CeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEcc
Q 007672 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 392 (594)
Q Consensus 313 ~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G 392 (594)
+|+++++|.++..+.+.... ..+++.++++|
T Consensus 191 ~t~~~~~P~~~~~l~~~~~~-------------------------------------------------~~~l~~~~~~G 221 (414)
T PRK08308 191 QHILYAVPLMLHILGRLLPG-------------------------------------------------TFQFHAVMTSG 221 (414)
T ss_pred CeEEEcCHHHHHHHHhcCCc-------------------------------------------------cccccEEEEcc
Confidence 99999999999988642110 01678899999
Q ss_pred CCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEcc
Q 007672 393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG 472 (594)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g 472 (594)
+++++++.+.+.+. +..+++.||+||++.+..... ....+++|+|++++++++.+ + .+..|||++++
T Consensus 222 ~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~---~~~~~~~G~p~~~~~~~~~~-~--------~~~~gel~v~~ 288 (414)
T PRK08308 222 TPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICPD---MKSHLDLGNPLPHVSVSAGS-D--------ENAPEEIVVKM 288 (414)
T ss_pred CCCCHHHHHHHHHh-CChhhhccCccccCCeeecCC---CCCCCccCccCCCeEEEEec-C--------CCCCceEEEEc
Confidence 99999999999876 678999999999986544221 12237899999999999875 2 23579999986
Q ss_pred CCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCC
Q 007672 473 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCS 552 (594)
Q Consensus 473 ~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (594)
. ++||+|||+|++|+||++++.||.+|+|++ +|++|+|.+||++|.++|+|.+|+|+++++
T Consensus 289 ~------------------~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~ 349 (414)
T PRK08308 289 G------------------DKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKD 349 (414)
T ss_pred C------------------CceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccC
Confidence 2 579999999999999999999999999996 799999999999999999999999999887
Q ss_pred ch------hhccccccccee--------eeEe------eeecCceeeecccccccc--cccc
Q 007672 553 SC------AMRRRHQKVGIL--------EWSC------WFIPGTLFTCSATKLYPL--RAEE 592 (594)
Q Consensus 553 ~~------~~~~~~~~~~~~--------~~~~------~~~p~~i~~~~~gk~~r~--~~~~ 592 (594)
+. +++......+.. .+.. +.....||+|++||+.|+ +++|
T Consensus 350 ~~~~~~~~~~v~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~~~~ 411 (414)
T PRK08308 350 PVAGERVKAKVISHEEIDPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLLELGE 411 (414)
T ss_pred CCCCceEEEEEEeCCCCCHHHHHHHHHHhCccccCCcEEEEeccCCCCCCcCeehhhhhhcc
Confidence 52 222222111111 1122 555567999999999999 7766
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-52 Score=408.87 Aligned_cols=480 Identities=18% Similarity=0.141 Sum_probs=368.7
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
....++.++|..+++++|+++|+++. +.. +++||+|+.+.++++|++|..+|++.||.|+++|+|.++++.++
T Consensus 74 r~~~ti~~~F~~~vrr~p~k~aii~~---~~~----~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lW 146 (649)
T KOG1179|consen 74 RERRTIAELFLSQVRRQPDKPAIIYE---GPF----QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALW 146 (649)
T ss_pred ccCCcHHHHHHHHHHhCCCccEEEEe---CCC----ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHH
Confidence 45688999999999999999999987 432 58999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
++++++|++.+.||++...+.|.|.++-++++.+|++.+..+.+.+.........-.++..+.... .....
T Consensus 147 lGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~---------~~g~~ 217 (649)
T KOG1179|consen 147 LGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSV---------PDGIE 217 (649)
T ss_pred HhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCC---------CchHH
Confidence 999999999999999999999999999999999999999887765542222122222333322211 01112
Q ss_pred eHHHHHhcccccccc---cCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecCh
Q 007672 199 SWDEFLHLGKVNEME---ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 275 (594)
++...++.....+.+ ....+..++++.+|||||||.||+.++||..+......+...+ +++++|+++..+|+
T Consensus 218 ~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPL 292 (649)
T KOG1179|consen 218 SLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPL 292 (649)
T ss_pred HHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchh
Confidence 233333322222212 2334677999999999999999999999999998888777777 89999999999999
Q ss_pred hHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007672 276 AHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (594)
Q Consensus 276 ~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (594)
+|+.+.+. +..++..|+|+++-.. ++.++|+...+|++|++.....+++.|++......++.
T Consensus 293 YHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~---------------- 356 (649)
T KOG1179|consen 293 YHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQ---------------- 356 (649)
T ss_pred HHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcC----------------
Confidence 99999887 6678999999999887 99999999999999999999999999987433332221
Q ss_pred HHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCc-eEeeecccCCCCceeccCCCCc
Q 007672 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFPDEM 432 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~-i~~~yG~tE~~~~~~~~~~~~~ 432 (594)
+++|..+ |..+.+++.+.|.+.||.. |...||+||............
T Consensus 357 -----------------------------HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~~v- 404 (649)
T KOG1179|consen 357 -----------------------------HKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDGRV- 404 (649)
T ss_pred -----------------------------ceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeecCcc-
Confidence 3678777 7889999999999999876 999999999877655542221
Q ss_pred cccCccccC------ccCceEEeeec--------CCCCCCCCCCCCCceEE--EccCCc---ccccCCCchhhhhc----
Q 007672 433 CMVGTAGPV------SVYSELRLEEV--------PEMGYSPLDDPPCGEVC--VRGKTL---FSGYYKNPDLTRES---- 489 (594)
Q Consensus 433 ~~~~~~G~~------~~~~~~~i~d~--------~~~~~~~~~~~~~Gei~--v~g~~v---~~gY~~~~~~~~~~---- 489 (594)
+.+|.. +-..++.-+|. +.|-..++++|+.|.++ |..... |.||.++.+.+.+.
T Consensus 405 ---GA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rD 481 (649)
T KOG1179|consen 405 ---GACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRD 481 (649)
T ss_pred ---ccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHh
Confidence 333321 11122222331 22333456677899764 233334 89999977776554
Q ss_pred -c--cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc--------hhhc-
Q 007672 490 -I--IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS--------CAMR- 557 (594)
Q Consensus 490 -~--~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~--------~~~~- 557 (594)
| .|-||.|||+-.+|+.|+|||.+|..|++.+ +|+||+..|+|.+|..+.+++||.|+|+.-| .+++
T Consensus 482 VFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~ 560 (649)
T KOG1179|consen 482 VFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVL 560 (649)
T ss_pred hhccCcEEEeeCcEEEEecCCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEe
Confidence 4 3459999999999999999999999999997 8999999999999999999999999998764 2223
Q ss_pred cccccccee--------eeEeeeecCc------eeeeccccccccccc
Q 007672 558 RRHQKVGIL--------EWSCWFIPGT------LFTCSATKLYPLRAE 591 (594)
Q Consensus 558 ~~~~~~~~~--------~~~~~~~p~~------i~~~~~gk~~r~~~~ 591 (594)
.+..+.+.+ .++.|.+|.+ |.+|.+-|++..++.
T Consensus 561 ~p~~~~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~ 608 (649)
T KOG1179|consen 561 DPTTEKDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQ 608 (649)
T ss_pred cCcccchHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHH
Confidence 333333332 3377888877 566778887776664
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=340.37 Aligned_cols=293 Identities=23% Similarity=0.279 Sum_probs=234.0
Q ss_pred CCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEE
Q 007672 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY 296 (594)
Q Consensus 217 ~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~ 296 (594)
..++++++++|||||||.||+|+++|+++...+...... +...++++..+|++|..++...+.++..|+++++
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~-------~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~ 104 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR-------LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVE 104 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc-------cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEe
Confidence 457899999999999999999999999999887765443 2345788999999999998877888889999887
Q ss_pred ec--C--ChHHHHHHHhhhc--CeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHH
Q 007672 297 YH--G--DLNALRDDLMELK--PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370 (594)
Q Consensus 297 ~~--~--~~~~~~~~i~~~~--~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (594)
.. . ++..+++.+++++ .++...+|..+..+......
T Consensus 105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-------------------------------------- 146 (358)
T PRK07824 105 LDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-------------------------------------- 146 (358)
T ss_pred cCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc--------------------------------------
Confidence 32 2 8999999999998 56666788776654321100
Q ss_pred HHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCccCceEEee
Q 007672 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLE 450 (594)
Q Consensus 371 ~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~ 450 (594)
..++ .++|.+++||+++++++.+.+.+ +++.+++.||+||++..+. ..|.|++++++++.
T Consensus 147 ~~~~--------~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~-----------~~G~~~~g~~v~i~ 206 (358)
T PRK07824 147 TAAL--------AELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV-----------YDGVPLDGVRVRVE 206 (358)
T ss_pred cCCc--------ccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC-----------cCceeCCCCEEEec
Confidence 0011 28999999999999999998876 4999999999999876432 35889999999985
Q ss_pred ecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeech
Q 007672 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 529 (594)
Q Consensus 451 d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~ 529 (594)
+ |||+++|+.++.||+++++.. .| .+|||+|||+|++ +||+|++.||.||+|++ +|++|+|
T Consensus 207 ~--------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~-~G~~v~p 268 (358)
T PRK07824 207 D--------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAIST-GGLTVLP 268 (358)
T ss_pred C--------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEE-CCEEECH
Confidence 5 999999999999999988643 34 6889999999999 89999999999999996 8999999
Q ss_pred HHHHHHHhcCCCccceEEeecCCc------hhhccccc--ccceee--------eE------eeeecCceeeeccccccc
Q 007672 530 EYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--KVGILE--------WS------CWFIPGTLFTCSATKLYP 587 (594)
Q Consensus 530 ~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~~~~~~--------~~------~~~~p~~i~~~~~gk~~r 587 (594)
.+||++|.+||+|.+|+|++.+++ ++++.... .....+ +. .+...+.||+|++||++|
T Consensus 269 ~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r 348 (358)
T PRK07824 269 QVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDR 348 (358)
T ss_pred HHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHHHHHHHHHhhCccccCCCEEEEecCCCCCCCccccH
Confidence 999999999999999999998774 23332211 111111 12 245556799999999999
Q ss_pred ccccc
Q 007672 588 LRAEE 592 (594)
Q Consensus 588 ~~~~~ 592 (594)
+++++
T Consensus 349 ~~L~~ 353 (358)
T PRK07824 349 RALVR 353 (358)
T ss_pred HHHHH
Confidence 98875
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=346.52 Aligned_cols=411 Identities=22% Similarity=0.233 Sum_probs=333.3
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
+...++.+.|...+...|+++|+++. + .++||.|+..+++++|+.|.+.|+.+++.|+++++.+.++++++
T Consensus 224 ~~~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~ 294 (642)
T COG1020 224 PLRLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVAL 294 (642)
T ss_pred CccchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHH
Confidence 33478999999999999999998864 3 47999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+|++++|+.++|++|.++.+++..++++.++..+++.......... ... +..+...
T Consensus 295 l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~--------------- 350 (642)
T COG1020 295 LAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVG--------LPG-LALDDAL--------------- 350 (642)
T ss_pred HHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEecccccccccc--------CCc-ccccccc---------------
Confidence 9999999999999999999999999999999999998332221100 000 1111100
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
+. .. ..........+++.++++|||||||.||||+.+|+++.+.+......+ .....|+++...++.+.
T Consensus 351 -~~----~~-~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~fD 419 (642)
T COG1020 351 -SE----IP-DTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSFD 419 (642)
T ss_pred -cc----CC-ccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCcccc
Confidence 00 00 000001233568999999999999999999999999999777776665 78889999999999888
Q ss_pred HHHHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
.+...++.++..|+++++... ++..+.+.+.++++|++..+|.++..+.......... .
T Consensus 420 ~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~-~---------------- 482 (642)
T COG1020 420 ASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLI-S---------------- 482 (642)
T ss_pred hhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcccc-C----------------
Confidence 888889999999999998775 8999999999999999999999999887531100000 0
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc--CCceEeeecccCCCCceeccCCCCc
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDEM 432 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~ 432 (594)
..+.+|.+++||+.++.++...+.... ...+.+.||+||+............
T Consensus 483 --------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~ 536 (642)
T COG1020 483 --------------------------PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAE 536 (642)
T ss_pred --------------------------CcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccc
Confidence 001489999999999999998887655 4689999999997665544332221
Q ss_pred cc-cCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC-CccccCceEEEcCCCcEE
Q 007672 433 CM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVK 510 (594)
Q Consensus 433 ~~-~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~-g~~~TGDlg~~~~dG~l~ 510 (594)
.. ...+|.|++|..++|.| .....++.+ ..||+++.|.++..||+++++.+.++|.. .+|+|||++++..||.+.
T Consensus 537 ~~~~~piG~p~~n~~~~ild-~~~~~~p~g--v~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e 613 (642)
T COG1020 537 LESRVPIGRPVANTQLYILD-QGLRPLPLG--VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALE 613 (642)
T ss_pred cCCCCCcceeeCCCeEEEEC-CCCCcCCCC--CCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEE
Confidence 11 36899999999999999 555555554 88999999999999999999999999955 499999999999999999
Q ss_pred EEeccCceeEcCCceeechHHHHHHHhcCC
Q 007672 511 IIDRKKNLIKISQGEYVALEYLENVYCVAP 540 (594)
Q Consensus 511 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p 540 (594)
++||.|+++|+ .|++|.+.|||..+.++|
T Consensus 614 ~lgr~D~qvki-~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 614 YLGRKDSQVKI-RGFRIELGEIEAALAEQP 642 (642)
T ss_pred EeccccceeEe-ceEecCcHHHHHHHhcCC
Confidence 99999999998 699999999999998875
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=285.52 Aligned_cols=268 Identities=17% Similarity=0.149 Sum_probs=200.1
Q ss_pred CCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCC--CCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEE
Q 007672 220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY 296 (594)
Q Consensus 220 ~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~ 296 (594)
+..++++|||||||.||+|+++|+++.+.+..+...+ ++ ...+++++.+|++|.+++.+ ++.++..|+++++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~ 169 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ 169 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence 5578999999999999999999999999887776655 44 34468999999999998765 6678889999988
Q ss_pred ecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhH
Q 007672 297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375 (594)
Q Consensus 297 ~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 375 (594)
... ++..+++.++.+ |+++++|.+++.+.+.. . ++
T Consensus 170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~-------------------------------------~l- 205 (386)
T TIGR02372 170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----Y-------------------------------------RL- 205 (386)
T ss_pred cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----c-------------------------------------CC-
Confidence 765 778888887754 89999999999886420 0 01
Q ss_pred HHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCC-ceEeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCC
Q 007672 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454 (594)
Q Consensus 376 ~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~-~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~ 454 (594)
+++|. ++||+++++++.+.+.+. +. .+++.||+||++++.....+ ...|.++|+.++++.+
T Consensus 206 -------~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~~------~~~~~~~p~~~~~~~~--- 267 (386)
T TIGR02372 206 -------PGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREAP------DDPFRLLPDLACFADT--- 267 (386)
T ss_pred -------Cccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccCC------CCCcccCCCccccCCC---
Confidence 15675 678999999999999875 54 69999999999876554322 3456777776654311
Q ss_pred CCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHH
Q 007672 455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534 (594)
Q Consensus 455 ~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~ 534 (594)
+. + .|+ ..|++|||+|++|+||+|++.||.||+|++ +|++|+|.+||+
T Consensus 268 ~~----------~---~g~------------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~ 315 (386)
T TIGR02372 268 LS----------S---AGL------------------ARRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRD 315 (386)
T ss_pred cc----------C---CCc------------------cceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHH
Confidence 10 0 021 125899999999999999999999999996 899999999999
Q ss_pred HHhcCCCccceEEeecCCc-hhhcccccccc-------e-----eeeEe------eeecCceeeecccccc
Q 007672 535 VYCVAPIIEDPQVNVSCSS-CAMRRRHQKVG-------I-----LEWSC------WFIPGTLFTCSATKLY 586 (594)
Q Consensus 535 ~l~~~p~V~~~~V~g~~~~-~~~~~~~~~~~-------~-----~~~~~------~~~p~~i~~~~~gk~~ 586 (594)
+|.+||+|.+|+|+...+. +++++...... + ..++. +.....+|+|++||++
T Consensus 316 ~l~~~p~V~~~~v~~~g~~~~a~vv~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 316 ILERNPRVRAAAVRLDGRRLKAFIVVAEDADEAELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred HHHcCCCceEEEEEcCCceEEEEEEECCCCChHHHHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence 9999999999999754332 33333221100 0 11222 4455678999999974
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=282.42 Aligned_cols=485 Identities=14% Similarity=0.120 Sum_probs=340.9
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
.+|.++|++++..+||++|+... +..+.+-+++||.+|..++.+++.+|.++ -+++||+|++++++++|++++++|
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~ 846 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA 846 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence 68999999999999999999987 76666778999999999999999999987 589999999999999999999999
Q ss_pred HHhcCCEEeecCCCCC------hhHHHHHHhhcCceEEEEcchhHHHHhccccccc---ccccEEEEecCCcHHHHHHHh
Q 007672 121 CNALSLICVPLYDTLG------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA---QRLRVMVCFTSLTAEQKEMAV 191 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~ 191 (594)
|+++|.+++|+.|.-. ...+..+++..++..|+++......+.+...... .....++..++...
T Consensus 847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~------- 919 (1363)
T KOG3628|consen 847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE------- 919 (1363)
T ss_pred HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch-------
Confidence 9999999999987542 2468889999999999999876544422110000 11122222222211
Q ss_pred hCCcceeeHHHHHhcccc--cccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEE
Q 007672 192 QTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY 269 (594)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (594)
+|..-.++... ......-...+.+|++.+.--++|.--++.++|+.+++.+......+ .+.+..-+
T Consensus 920 -------t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-----~l~~~rpl 987 (1363)
T KOG3628|consen 920 -------TIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-----QLYKSRPL 987 (1363)
T ss_pred -------hhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-----ccccCCce
Confidence 11111111111 12222334678999999999999999999999999999999999998 66666666
Q ss_pred EEecChhHHHHHH-HHHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 007672 270 LSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (594)
Q Consensus 270 ~~~~pl~~~~~~~-~~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (594)
+...+.+...|+. .++..++.|+..++++. ++..|+..|+++++.-++.+-..++.+.+....+.+..+..
T Consensus 988 ~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~--- 1064 (1363)
T KOG3628|consen 988 LGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKR--- 1064 (1363)
T ss_pred EEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhh---
Confidence 6666767666665 47788999999888765 89999999999999999998888887766444333322210
Q ss_pred HHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc---CC---ceEeeecc
Q 007672 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGL 417 (594)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~---~~---~i~~~yG~ 417 (594)
..+.+ + ..++..-+.....+...|.+.+ |. .+-..|+.
T Consensus 1065 ---------------------------gnn~s--------~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~ 1108 (1363)
T KOG3628|consen 1065 ---------------------------GNNTS--------S-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSS 1108 (1363)
T ss_pred ---------------------------hcccc--------c-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccc
Confidence 00111 1 2233334444445555554443 21 13333333
Q ss_pred cCCCCceeccC---------------------------CCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEE
Q 007672 418 TETCGPTTVCF---------------------------PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 470 (594)
Q Consensus 418 tE~~~~~~~~~---------------------------~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v 470 (594)
-=--.++.... +.. ......|...+++++.|++ |+.. .++.+|+.||||+
T Consensus 1109 r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~-l~L~dSG~~~~~~~i~Ivn-PEtk-~pc~dge~GEIW~ 1185 (1363)
T KOG3628|consen 1109 RVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHS-LLLYDSGKLPVYTDIAIVN-PETK-GPCRDGELGEIWV 1185 (1363)
T ss_pred cCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCc-cccccCCcccccceeEEeC-Cccc-cccccCCcceEEe
Confidence 22222222200 000 0123558888999999999 4333 4556779999999
Q ss_pred ccCCcccccCCCchh-hhhcc----------cCCccccCceEEEcC------C----CcEEEEeccCceeEcCCceeech
Q 007672 471 RGKTLFSGYYKNPDL-TRESI----------IDGWFHTGDIGQILP------N----GVVKIIDRKKNLIKISQGEYVAL 529 (594)
Q Consensus 471 ~g~~v~~gY~~~~~~-~~~~~----------~~g~~~TGDlg~~~~------d----G~l~~~GR~~d~i~~~~G~~v~~ 529 (594)
.|..-+.+|++-.+. ....| ..+|.||||+|++.. + .-||++|-+++.+.+ +|.+.+|
T Consensus 1186 ~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p 1264 (1363)
T KOG3628|consen 1186 NSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFP 1264 (1363)
T ss_pred ccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCc
Confidence 999888887754222 11222 135999999999943 2 248999999999998 7999999
Q ss_pred HHHHHHHh-cCCCccceEEeecCCchhhcc--------------------cccccceeeeEeeeecCceeeecccccccc
Q 007672 530 EYLENVYC-VAPIIEDPQVNVSCSSCAMRR--------------------RHQKVGILEWSCWFIPGTLFTCSATKLYPL 588 (594)
Q Consensus 530 ~~iE~~l~-~~p~V~~~~V~g~~~~~~~~~--------------------~~~~~~~~~~~~~~~p~~i~~~~~gk~~r~ 588 (594)
.+||..+. .||.|.+|+||....-++++. .++.+ +.+++.|+.++.+|+.+.|.++|.
T Consensus 1265 ~DIE~TV~~vH~~I~~cavF~~~glvVvviE~~gq~~~~~LvPlIv~~vL~eH~i-I~dvV~fV~~G~~p~~~~gEK~R~ 1343 (1363)
T KOG3628|consen 1265 SDIETTVERVHPSIGGCAVFQATGLVVVVIECHGQQELADLVPLIVNVVLEEHYI-ILDVVAFVDKGVFPRNSRGEKQRA 1343 (1363)
T ss_pred chHHHHHHHhcccccceeeEeeCCeEEEEEEecCchhHhhhhHHHHHHHHhhcce-EEEEEEEecCCccccCCchhhHHH
Confidence 99999996 699999999997665422211 12222 345577999999999999999998
Q ss_pred cccc
Q 007672 589 RAEE 592 (594)
Q Consensus 589 ~~~~ 592 (594)
.+++
T Consensus 1344 ~I~~ 1347 (1363)
T KOG3628|consen 1344 HILD 1347 (1363)
T ss_pred HHHH
Confidence 8764
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=280.89 Aligned_cols=305 Identities=18% Similarity=0.144 Sum_probs=216.4
Q ss_pred CCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH-HHHHHHhhhcCcEEEE
Q 007672 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD-RVIEEYFFRRGASVGY 296 (594)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~-~~~~l~~l~~G~~~~~ 296 (594)
+.++++.+++||||||.||++.++|.++..........+. ..++.++|++++..++.+..+ +...+.++..|++++.
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~--~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 150 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIR--AAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP 150 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHH--HcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence 4567889999999999999999999998765443332211 126778899888766544333 2234556778999887
Q ss_pred ecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhH
Q 007672 297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375 (594)
Q Consensus 297 ~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 375 (594)
++. ++..+++.|++++||+++++|+++..|++..........
T Consensus 151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~------------------------------------- 193 (422)
T TIGR02155 151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA------------------------------------- 193 (422)
T ss_pred cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc-------------------------------------
Confidence 665 789999999999999999999999998765432110000
Q ss_pred HHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCC-ceeccCCCCccccCccccCc--cCceEEeeec
Q 007672 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG-PTTVCFPDEMCMVGTAGPVS--VYSELRLEEV 452 (594)
Q Consensus 376 ~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~-~~~~~~~~~~~~~~~~G~~~--~~~~~~i~d~ 452 (594)
..++|.++++|+++++++.+.+.+.||+++++.||+||+++ ........ ...|.++ ++..++|+|.
T Consensus 194 ------~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~-----~~~g~~~~~~~~~~eivd~ 262 (422)
T TIGR02155 194 ------QTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE-----TQDGLHIWEDHFYPEIIDP 262 (422)
T ss_pred ------cCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc-----cCCCceEecCeeEEEEECC
Confidence 02799999999999999999999999999999999999853 22221111 1123333 3566778883
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCC-C-----cEEEEeccCceeEcCCcee
Q 007672 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-G-----VVKIIDRKKNLIKISQGEY 526 (594)
Q Consensus 453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~d-G-----~l~~~GR~~d~i~~~~G~~ 526 (594)
+++ .++++|+.|||++++. +...|..+||+|||+++++++ | .+++.||.+|+|++ +|.+
T Consensus 263 ~~g--~~v~~Ge~Gelvvt~~------------~~~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~-~G~~ 327 (422)
T TIGR02155 263 HTG--EVLPDGEEGELVFTTL------------TKEALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLII-RGVN 327 (422)
T ss_pred CCC--CCCCCCCeeEEEEecC------------CccccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEE-CCEE
Confidence 233 3445679999999973 233456789999999999876 4 47899999999997 7999
Q ss_pred echHHHHHHHhcCCCccceEEeecCC-----ch-hhccccc------------------------ccceeeeEeeeecCc
Q 007672 527 VALEYLENVYCVAPIIEDPQVNVSCS-----SC-AMRRRHQ------------------------KVGILEWSCWFIPGT 576 (594)
Q Consensus 527 v~~~~iE~~l~~~p~V~~~~V~g~~~-----~~-~~~~~~~------------------------~~~~~~~~~~~~p~~ 576 (594)
|+|.+||++|.+||+|.....+.+.. .. +.++... .++...-+.+..|+.
T Consensus 328 v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~ 407 (422)
T TIGR02155 328 VFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSMDVHLVEPGS 407 (422)
T ss_pred ECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHhccCcEEEEEEECCCC
Confidence 99999999999999998333332222 11 1111110 111111255777899
Q ss_pred eeeecccccccc
Q 007672 577 LFTCSATKLYPL 588 (594)
Q Consensus 577 i~~~~~gk~~r~ 588 (594)
||+++ ||.+|.
T Consensus 408 lp~~~-GK~~~~ 418 (422)
T TIGR02155 408 LPRSE-GKARRV 418 (422)
T ss_pred ccCCC-CCceEE
Confidence 99988 999885
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=232.24 Aligned_cols=258 Identities=18% Similarity=0.138 Sum_probs=183.6
Q ss_pred CCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEE
Q 007672 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY 296 (594)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~ 296 (594)
+.++++.+.+||||||.||+|.+||.++..........+. ..++.++|+++...++.+..+... ...++..|++++.
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~--~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~ 161 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFV--SQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP 161 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHH--HcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence 4668889999999999999999999998876655443221 126788899999988877655443 4556778887653
Q ss_pred ecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHH
Q 007672 297 YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK 376 (594)
Q Consensus 297 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 376 (594)
. ......++.|+.+++|.+.++|+.+..|++..........
T Consensus 162 ~-~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~-------------------------------------- 202 (445)
T TIGR03335 162 E-GKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPA-------------------------------------- 202 (445)
T ss_pred C-CchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcc--------------------------------------
Confidence 3 3445678999999999999999988877654332110000
Q ss_pred HHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCc--cCceEEeeecCC
Q 007672 377 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS--VYSELRLEEVPE 454 (594)
Q Consensus 377 ~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~--~~~~~~i~d~~~ 454 (594)
..++|.+++||+++++++.+.+.+.||+.+++.||+||++.. ..+.. ..|..+ +...++|+| ++
T Consensus 203 -----~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~-~~c~~-------~~g~h~~~d~~~vEIvD-p~ 268 (445)
T TIGR03335 203 -----ESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMC-GECQA-------VAGLHVPEDLVHLDVYD-PR 268 (445)
T ss_pred -----cCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhhe-EEecC-------CCCccccCCceEEEEEc-CC
Confidence 027999999999999999999999899999999999998632 22111 123333 456788998 54
Q ss_pred CCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcC-C----C----cEEEEeccCceeEcCCce
Q 007672 455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-N----G----VVKIIDRKKNLIKISQGE 525 (594)
Q Consensus 455 ~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~-d----G----~l~~~GR~~d~i~~~~G~ 525 (594)
++ .++++|+.|||++++-.... .... ++==-|+|||++.+.. + | .+...||.||++++ +|.
T Consensus 269 ~~-~~vp~Ge~GELvvT~L~~~~----~r~~----~PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~-~g~ 338 (445)
T TIGR03335 269 HQ-RFLPDGECGRIVLTTLLKPG----ERCG----SLLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWI-SGV 338 (445)
T ss_pred CC-CCCcCCCceEEEEEecCCCC----ccCC----ceEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEE-CCE
Confidence 33 44567799999999842100 0000 0000189999999732 2 2 14456999999998 799
Q ss_pred eechHHHHHHHhcCC
Q 007672 526 YVALEYLENVYCVAP 540 (594)
Q Consensus 526 ~v~~~~iE~~l~~~p 540 (594)
+|+|.+||++|.+++
T Consensus 339 ~~~p~~ie~~l~~~~ 353 (445)
T TIGR03335 339 PFNRVDVERAVFQRE 353 (445)
T ss_pred EeCHHHHHHHHhccC
Confidence 999999999999953
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-25 Score=241.98 Aligned_cols=488 Identities=19% Similarity=0.118 Sum_probs=306.0
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
.+.++.+.+.+.+...|...+..+.+. ....+.....||.+....++.+++.|.+.|...|+.|++++..+.++++..+
T Consensus 34 ~~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~ 112 (1032)
T KOG1178|consen 34 FMGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVF 112 (1032)
T ss_pred hhcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeee
Confidence 556788899999999999988877644 2345556689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCC----hhHHH---HHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhh
Q 007672 120 ACNALSLICVPLYDTLG----PGAVN---FILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ 192 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~----~~~l~---~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 192 (594)
+.+++|..+++++|.++ ++++. +.+......+ ...... .....+.......+...
T Consensus 113 ~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i--~~~l~i---~~~~~~~~~~~~sv~~~------------- 174 (1032)
T KOG1178|consen 113 AVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEI--VRRLNI---IDILLNSLFPKLSVETI------------- 174 (1032)
T ss_pred ehhhcceEEEEecCCCcccccchHHHhhhhhheecccee--hhhhhh---HHHHhhccccccchhhc-------------
Confidence 99999999999999998 33222 2221111111 111100 01011110000000000
Q ss_pred CCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEe
Q 007672 193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272 (594)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (594)
...|..+..+. .........++..+++.||||+||.||+|.-+|..+.....+....+ .....+++-..
T Consensus 175 ----~~~f~~~~~~~--~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-----~~t~s~~~~~~ 243 (1032)
T KOG1178|consen 175 ----ADSFQMVLHNE--DTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-----PPTGSDRFTFK 243 (1032)
T ss_pred ----cchhhhhhccC--CCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-----CcCccchhhhh
Confidence 01122222111 11112234567789999999999999999999999999999977766 66666665222
Q ss_pred cChhHHHHHHHHHH-hhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 007672 273 LPLAHILDRVIEEY-FFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (594)
Q Consensus 273 ~pl~~~~~~~~~l~-~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (594)
...+.......... .++.|+.+..+.. ++..+.+.+++++++..+.+|+++++++...........
T Consensus 244 ~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~--------- 314 (1032)
T KOG1178|consen 244 TSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLE--------- 314 (1032)
T ss_pred heeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhh---------
Confidence 22222222223333 4555665555433 589999999999999999999999998765433211100
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceec
Q 007672 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTV 426 (594)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~ 426 (594)
+...++..+..+ +.|+....+|++...++...+...+ ..-...-|++++..+....
T Consensus 315 ----~~~~~~dl~~~~-------------------~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~ 371 (1032)
T KOG1178|consen 315 ----HAFSLSDLLTKR-------------------SCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSY 371 (1032)
T ss_pred ----hhhhcccccccc-------------------hhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeH
Confidence 000011000000 2789999999999999988665554 2222333888888776555
Q ss_pred cCCCCc------cccCccccCc----cCceEEeeecCCCCCCC--CCCCCCceEEEccCCcccccCCCchhhhhcc--c-
Q 007672 427 CFPDEM------CMVGTAGPVS----VYSELRLEEVPEMGYSP--LDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--I- 491 (594)
Q Consensus 427 ~~~~~~------~~~~~~G~~~----~~~~~~i~d~~~~~~~~--~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~- 491 (594)
..-... .....+.+-. ..+.+.+.. ..+.... ++.+..|+-+..+..+..|| ..++.....+ .
T Consensus 372 ~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~d 449 (1032)
T KOG1178|consen 372 DDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDGY-STPENFLPNFLTVD 449 (1032)
T ss_pred HhhCcccceecceeEEeccchhhccCCCcceeeee-ccCcccCCcccceeecccccccceeeccc-cchhhcCCcccccc
Confidence 322110 0001111000 012222222 1122111 11122233333334444452 2333322222 2
Q ss_pred ---CCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCch------hhccccc-
Q 007672 492 ---DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSSC------AMRRRHQ- 561 (594)
Q Consensus 492 ---~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~~------~~~~~~~- 561 (594)
+.+|+|||.|+.-++|.+.+.||.|++||+ +|.++...+|+.++..+|.|.++++....+.. +++....
T Consensus 450 ~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~ 528 (1032)
T KOG1178|consen 450 GVKARIYRTGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGG 528 (1032)
T ss_pred cchhhcccccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCC
Confidence 348999999988889999999999999997 79999999999999999999999999887753 2322211
Q ss_pred --cc--------ceeeeEeeeec------Cceeeecccccccccccc
Q 007672 562 --KV--------GILEWSCWFIP------GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 562 --~~--------~~~~~~~~~~p------~~i~~~~~gk~~r~~~~~ 592 (594)
.+ ...++..|++| ..+|.+++||+.++++.+
T Consensus 529 ~~~~~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~ 575 (1032)
T KOG1178|consen 529 SKSVLIRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKALLE 575 (1032)
T ss_pred CCchhHHHHHHhhcccccceecceEEEEhhhCCcCCCCCcChhhhhh
Confidence 11 12344557777 569999999999998865
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=206.77 Aligned_cols=223 Identities=15% Similarity=0.035 Sum_probs=164.0
Q ss_pred HHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHHHHhcCC
Q 007672 48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSL 126 (594)
Q Consensus 48 l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~ 126 (594)
|..+++++|+++|+++. ++.+++.+++||+||.++++++|++|++ .|+++||+|+|+++|+++++++++||+++|+
T Consensus 2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~ 78 (227)
T TIGR03089 2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV 78 (227)
T ss_pred hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 56788899999999865 4333233689999999999999999998 6999999999999999999999999999999
Q ss_pred EEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhc
Q 007672 127 ICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL 206 (594)
Q Consensus 127 ~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (594)
+++|++ .+++++++++.+....... . +.++.+.+....... .........+|.+....
T Consensus 79 v~vp~n-------------~s~a~~~v~~~~~~~~~~~------~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 136 (227)
T TIGR03089 79 EVVLAG-------------DPDADVVVTGPDRLAAAAG------S--GEVVALSLDPLGRRV-AGELPPGVIDFAPEVRV 136 (227)
T ss_pred EEEeCC-------------CCCCCEEEeCcchhhhccc------C--CceEEEeccccccCC-CCCCCCcccchhhhhhc
Confidence 999995 6789999999877665321 1 222332110000000 00001122356555543
Q ss_pred ccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHH-HH
Q 007672 207 GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EE 285 (594)
Q Consensus 207 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~l 285 (594)
......+.....++|+++++||||+ +|.+++... ..+ ++.++|+++ .+|++|.+|+.. ++
T Consensus 137 ~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~~~ 197 (227)
T TIGR03089 137 HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLATLL 197 (227)
T ss_pred cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHHHH
Confidence 2121111113466899999999985 666666654 223 688999999 999999999975 77
Q ss_pred HhhhcCcEEEEecC-ChHHHHHHHhhhcCe
Q 007672 286 YFFRRGASVGYYHG-DLNALRDDLMELKPT 314 (594)
Q Consensus 286 ~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t 314 (594)
.++..|+++++.+. ++..+++.|+++++|
T Consensus 198 ~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 198 APLAAGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred HHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence 88999999998876 999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=193.69 Aligned_cols=266 Identities=21% Similarity=0.206 Sum_probs=198.0
Q ss_pred CCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChh-HHHHHHHHHHhhhcCcEEE
Q 007672 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA-HILDRVIEEYFFRRGASVG 295 (594)
Q Consensus 217 ~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~-~~~~~~~~l~~l~~G~~~~ 295 (594)
.+.++...+-.||||||.|+.+.+|+..+......+...+ ...+...+|++....... +..|+.+...+-..|++++
T Consensus 87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~--~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vi 164 (438)
T COG1541 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSL--YSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVI 164 (438)
T ss_pred ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHH--HHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEE
Confidence 3556677788999999999999999999888777777655 233677888876665522 2233344555556777766
Q ss_pred EecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhh
Q 007672 296 YYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374 (594)
Q Consensus 296 ~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 374 (594)
=... +...-++.++.+++|++.++|+.+..|++......... +.
T Consensus 165 p~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~--------------------------------~~--- 209 (438)
T COG1541 165 PISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDP--------------------------------DK--- 209 (438)
T ss_pred ccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCCh--------------------------------hh---
Confidence 5554 88999999999999999999999999998877653110 00
Q ss_pred HHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCcccc--CccCceEEeeec
Q 007672 375 RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP--VSVYSELRLEEV 452 (594)
Q Consensus 375 ~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~--~~~~~~~~i~d~ 452 (594)
.+||.+++|+|+++++..+.+.+.||+..++.||+||..+..+..... .. |. .-+...+.|+|+
T Consensus 210 --------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~-----~~-glhi~eD~~~~Ei~dP 275 (438)
T COG1541 210 --------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTE-----RN-GLHIWEDHFIFEIVDP 275 (438)
T ss_pred --------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccc-----cc-CCCcchhhceeeeecC
Confidence 189999999999999999999999999999999999997774221111 11 32 235667788884
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCC----Cc-----EEEEeccCceeEcCC
Q 007672 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GV-----VKIIDRKKNLIKISQ 523 (594)
Q Consensus 453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~d----G~-----l~~~GR~~d~i~~~~ 523 (594)
.++. ++++|+.|||+++.-. +. .++==-|+|||++.+.++ |. -.+.||.||++.+ .
T Consensus 276 ~t~e--~l~dge~GelV~T~L~-------~~-----~~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~-~ 340 (438)
T COG1541 276 ETGE--QLPDGERGELVITTLT-------KE-----GMPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIV-R 340 (438)
T ss_pred CcCc--cCCCCCeeEEEEEecc-------cc-----CcceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEE-C
Confidence 4444 4556689999998722 11 010002899999999764 22 4689999999998 5
Q ss_pred ceeechHHHHHHHhcCCCcc-ceEEe
Q 007672 524 GEYVALEYLENVYCVAPIIE-DPQVN 548 (594)
Q Consensus 524 G~~v~~~~iE~~l~~~p~V~-~~~V~ 548 (594)
|.+|+|.+||.+|.+.+.+. +-.++
T Consensus 341 G~~vfp~~ie~~l~~~~~~~~~yqi~ 366 (438)
T COG1541 341 GVNVFPSQIERVLLQIPEVTPHYQII 366 (438)
T ss_pred CEEeCHHHHHHHHhcccCCCceEEEE
Confidence 99999999999999999998 44444
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=183.02 Aligned_cols=449 Identities=14% Similarity=0.090 Sum_probs=301.1
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEeCCc--hhHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS-ALRASGAEPGCRVGIYGANC--PQWV 115 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~-~L~~~Gi~~gd~V~i~~~n~--~~~~ 115 (594)
..+..+..+++++-.+++...|.++. |.++. ...+||..+..+++++|+ .|-+.|+.++|+|.+++..+ .+++
T Consensus 91 ~a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~ 166 (1363)
T KOG3628|consen 91 MALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFL 166 (1363)
T ss_pred hhhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHh
Confidence 46677888888888889999999998 65544 789999999999999999 56666999999999998777 8999
Q ss_pred HHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCc
Q 007672 116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (594)
Q Consensus 116 ~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 195 (594)
+..++|...|.+++|+.+..+.+++..+++....+++++.......+.....+ ........+......
T Consensus 167 isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~------------~s~~k~v~~w~t~~~ 234 (1363)
T KOG3628|consen 167 ISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSP------------VSLAKAVAWWKTNDF 234 (1363)
T ss_pred hhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCc------------ccHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999988766655332210 000000111111111
Q ss_pred c-eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhcc---------------c
Q 007672 196 K-PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ---------------F 259 (594)
Q Consensus 196 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~---------------~ 259 (594)
+ .+.++ ....+..... ..+|-||++++|.--+++++|. ++.+.+.+...+.. .
T Consensus 235 k~~~~~~---------k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~ 303 (1363)
T KOG3628|consen 235 KGNYTKD---------KIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAH 303 (1363)
T ss_pred cceeehh---------hccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhh
Confidence 1 11111 1111122222 7999999999999999999999 77666655433210 0
Q ss_pred cCCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHH
Q 007672 260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334 (594)
Q Consensus 260 ~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~ 334 (594)
-.+...++.++.........|+++ ++.+++.|.+...++. .+..+...+.+++.+++..-...+.+....+..-.
T Consensus 304 v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p 383 (1363)
T KOG3628|consen 304 VFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDP 383 (1363)
T ss_pred ccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCc
Confidence 112356677777777777788876 7789999999987765 78899999999999999987666666543322210
Q ss_pred HhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc----C--
Q 007672 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC----C-- 408 (594)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~----~-- 408 (594)
...- .-.-.+..|++ +||.+.+....++.+......+.| |
T Consensus 384 ~a~~--------------------------s~~k~~t~d~s--------slk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~ 429 (1363)
T KOG3628|consen 384 KATL--------------------------SFKKYKTPDLS--------SLKGCMVTCTAVDTEFQEIVSDRWLKPLGET 429 (1363)
T ss_pred cccc--------------------------chhhccCCCcc--------ceeeeEEeeeecchHHHHHHHHhhcccccCc
Confidence 0000 00001112344 999999999999887665433322 1
Q ss_pred ----------------CceEeeecccCCCCceeccCCCCc-----------------------------cccCccccCcc
Q 007672 409 ----------------AFLVQGYGLTETCGPTTVCFPDEM-----------------------------CMVGTAGPVSV 443 (594)
Q Consensus 409 ----------------~~i~~~yG~tE~~~~~~~~~~~~~-----------------------------~~~~~~G~~~~ 443 (594)
.-....=+++|++......+.+.. .....+|...|
T Consensus 430 ~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~ 509 (1363)
T KOG3628|consen 430 NVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMP 509 (1363)
T ss_pred CcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecc
Confidence 112222233455444333222100 01124444444
Q ss_pred C-ceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc------C-------CccccCceEEEcCCCcE
Q 007672 444 Y-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------D-------GWFHTGDIGQILPNGVV 509 (594)
Q Consensus 444 ~-~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~------~-------g~~~TGDlg~~~~dG~l 509 (594)
+ +.+.+++ ++....+-.++.|||||.++++..+|+.-+..+...|. . .|.|||-+|++. +|.+
T Consensus 510 g~~t~~vv~--~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki 586 (1363)
T KOG3628|consen 510 GDATLAVVN--PDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKI 586 (1363)
T ss_pred cceEEEEeC--CCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeE
Confidence 4 4455555 34444444669999999999999999988877777762 1 289999999995 7778
Q ss_pred EEEeccCceeEcCCceeech----------HHHHHHHhcCCCccceEEeecC
Q 007672 510 KIIDRKKNLIKISQGEYVAL----------EYLENVYCVAPIIEDPQVNVSC 551 (594)
Q Consensus 510 ~~~GR~~d~i~~~~G~~v~~----------~~iE~~l~~~p~V~~~~V~g~~ 551 (594)
|++|-.+|++.--.|...+. +.|+-+++..+.|=|+.+|-.+
T Consensus 587 ~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~~E 638 (1363)
T KOG3628|consen 587 YVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFEDE 638 (1363)
T ss_pred EEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeeecc
Confidence 88887777765434554443 3367777888999999988633
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-13 Score=141.06 Aligned_cols=244 Identities=16% Similarity=0.188 Sum_probs=152.2
Q ss_pred EEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEe--cChhHHHHHHHHHHhhhcCcEEEEe--c
Q 007672 223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF--LPLAHILDRVIEEYFFRRGASVGYY--H 298 (594)
Q Consensus 223 a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pl~~~~~~~~~l~~l~~G~~~~~~--~ 298 (594)
..+..||||||.|-.+..+..............+ ...++..++++... .+. +.+.. +. .....+..+ .
T Consensus 102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~--~~~g~~~g~r~a~~~~~~~-~ly~~---~~--~~~~~~~~~~l~ 173 (430)
T TIGR02304 102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKV--LPDGLFAKHRIAFFLRADN-NLYQS---VN--NRWISLDFFDLL 173 (430)
T ss_pred EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhh--CccccccCCcEEEEEccCh-hHHHH---HH--hccceeeecCCC
Confidence 4567899999999999999986643322221111 11234444443333 222 11111 00 111112222 2
Q ss_pred CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHH
Q 007672 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378 (594)
Q Consensus 299 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (594)
.+.+..++.|++++|+++.+.|+.+..|+++.......
T Consensus 174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~------------------------------------------ 211 (430)
T TIGR02304 174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT------------------------------------------ 211 (430)
T ss_pred cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC------------------------------------------
Confidence 37899999999999999999999999998765432110
Q ss_pred HHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCc-cCceEE--eeecCCC
Q 007672 379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS-VYSELR--LEEVPEM 455 (594)
Q Consensus 379 ~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~--i~d~~~~ 455 (594)
.+++.++++||.++++..+.+.+.||+++++.||+|| |.++..+..+. . ... ...-++ ++| +++
T Consensus 212 ----~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~------l-Hl~ed~~~vE~~ivD-~~~ 278 (430)
T TIGR02304 212 ----IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGT------L-HLNEDLVHIEKQYLD-EHK 278 (430)
T ss_pred ----CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCC------E-EEccccEEEEeeEEC-CCC
Confidence 1689999999999999999999999999999999999 55443332111 0 111 112233 566 322
Q ss_pred CCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCC----Cc----E-EEEeccCceeEc--CCc
Q 007672 456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GV----V-KIIDRKKNLIKI--SQG 524 (594)
Q Consensus 456 ~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~d----G~----l-~~~GR~~d~i~~--~~G 524 (594)
.+..+|++ +.+. . ++==-|+|||++.+.++ |. | .+.||.+|++++ .+|
T Consensus 279 ---------~~~~ViT~------L~n~-~-----~PlIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G 337 (430)
T TIGR02304 279 ---------RFVPIITD------FTRT-T-----QPIVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSG 337 (430)
T ss_pred ---------ceEEEEec------CCCc-c-----ceEEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCC
Confidence 13445554 1111 0 00002899999988554 32 3 478999999985 345
Q ss_pred ee--echHHHHHHH-hcCCCccceEEeec
Q 007672 525 EY--VALEYLENVY-CVAPIIEDPQVNVS 550 (594)
Q Consensus 525 ~~--v~~~~iE~~l-~~~p~V~~~~V~g~ 550 (594)
.. |+|..++.++ ...++|.+..|+-.
T Consensus 338 ~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~ 366 (430)
T TIGR02304 338 DEQTVFPDFIRRVILFTLPLIVEYRVLQT 366 (430)
T ss_pred CeEEeCHHHHHHHHHhcCCCCceEEEEEc
Confidence 55 4899998874 56789999887743
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-15 Score=150.95 Aligned_cols=96 Identities=11% Similarity=0.017 Sum_probs=75.6
Q ss_pred ccCCccccCceEEE-cCCCcEEEEeccCceeEcCCc---eeechHHHHHHHhcCCCccceEEeecCCc------hhhccc
Q 007672 490 IIDGWFHTGDIGQI-LPNGVVKIIDRKKNLIKISQG---EYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRR 559 (594)
Q Consensus 490 ~~~g~~~TGDlg~~-~~dG~l~~~GR~~d~i~~~~G---~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~ 559 (594)
+.||||+|||+|++ |+||+|++.||.+ +| ++|+|. ||++|.+||+|.||+|+|++++ ++++..
T Consensus 206 ~~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~ 278 (365)
T PRK09188 206 PSRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEA 278 (365)
T ss_pred ccCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEE
Confidence 47899999999998 7999999999997 57 899999 9999999999999999999885 344432
Q ss_pred cccccee--------eeEe-----eeecCceeeecccccccccccc
Q 007672 560 HQKVGIL--------EWSC-----WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 560 ~~~~~~~--------~~~~-----~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
....+.. .+.. +.+...+|+|++||++|+.+++
T Consensus 279 ~~~~~~~el~~~l~~~L~~kvP~~v~~v~~lP~t~~GKi~R~~Lr~ 324 (365)
T PRK09188 279 ELPADEKSLRARLAGAKPPKPPEHIQPVAALPRDADGTVRDDILRL 324 (365)
T ss_pred CCCCCHHHHHHHHHhhchhcCCcEEEEECCCCCCCCCCccHHHHHH
Confidence 2211111 1132 4444679999999999998875
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-07 Score=95.43 Aligned_cols=235 Identities=18% Similarity=0.195 Sum_probs=139.1
Q ss_pred CCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhH---HHHH-H-HHHHhhhcCc
Q 007672 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH---ILDR-V-IEEYFFRRGA 292 (594)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~---~~~~-~-~~l~~l~~G~ 292 (594)
..+++..++.||||||.|--+.+.+..+..+...+...+..........-.++...|-.. .++. . ..+..+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 456677889999999998667777766666665555554322211122233444444332 1111 1 1233344555
Q ss_pred EEEEecC---ChHHHHHHH----hhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCc
Q 007672 293 SVGYYHG---DLNALRDDL----MELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA 365 (594)
Q Consensus 293 ~~~~~~~---~~~~~~~~i----~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (594)
. ..... +...++..+ ...++-.+++.|.++-.++.++.+......
T Consensus 167 ~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~--------------------------- 218 (365)
T PF04443_consen 167 R-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR--------------------------- 218 (365)
T ss_pred e-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc---------------------------
Confidence 5 33332 556555554 466899999999877776654443322111
Q ss_pred chHHHHHhhHHHHHHhCCceeEEEEcc------CCCCH-HHHHHHHHhcCC----ceEeeecccCCCCceeccCCCCccc
Q 007672 366 SPLADLLAFRKVKARLGGRLRLVISGG------APLST-EVEEFLRVTCCA----FLVQGYGLTETCGPTTVCFPDEMCM 434 (594)
Q Consensus 366 ~~~~~~~~l~~~~~~~~~slr~i~~~G------~~l~~-~~~~~~~~~~~~----~i~~~yG~tE~~~~~~~~~~~~~~~ 434 (594)
| .+..+.+-.|| +.+++ ++.+.+.+.||+ .+++.|||||...........
T Consensus 219 --------L-------~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~---- 279 (365)
T PF04443_consen 219 --------L-------PKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG---- 279 (365)
T ss_pred --------C-------CCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCC----
Confidence 0 01345566666 34654 566777888888 599999999976544333111
Q ss_pred cCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCC--------
Q 007672 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-------- 506 (594)
Q Consensus 435 ~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~d-------- 506 (594)
. .+.|.. +.|.| +. +..+++.|+.|-|.+-++... .| .+..-|.|+|.+..+
T Consensus 280 --~--~~~p~w-V~iRD-p~-tl~~~~~Ge~Gli~vidl~~~-s~------------p~~IlTeDlGvl~~~~~c~cr~g 339 (365)
T PF04443_consen 280 --H--FHVPPW-VIIRD-PE-TLEPLPPGETGLIQVIDLANT-SY------------PGFILTEDLGVLHGDDDCGCRKG 339 (365)
T ss_pred --c--ccCCCe-EEEEC-CC-CCcCCCCCCeeEEEEEccccc-CC------------CcEEEEcceeeecCCCCCCCccC
Confidence 1 123333 66777 33 456777789999988776432 22 233679999988654
Q ss_pred CcEEEEeccCcee
Q 007672 507 GVVKIIDRKKNLI 519 (594)
Q Consensus 507 G~l~~~GR~~d~i 519 (594)
.++.++||.+.-=
T Consensus 340 ~~f~vlGR~~~ae 352 (365)
T PF04443_consen 340 KYFEVLGRADGAE 352 (365)
T ss_pred CEEEEEeCCCCCc
Confidence 2799999987544
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.26 E-value=2e-05 Score=84.39 Aligned_cols=145 Identities=19% Similarity=0.204 Sum_probs=79.7
Q ss_pred CceeEEEEccCCCCHHHHHHHHHhcC-Cc-eEeeecccCCCCceeccCCCCccccCccccCccC-ceEEeeecCCCC---
Q 007672 383 GRLRLVISGGAPLSTEVEEFLRVTCC-AF-LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY-SELRLEEVPEMG--- 456 (594)
Q Consensus 383 ~slr~i~~~G~~l~~~~~~~~~~~~~-~~-i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~~~~--- 456 (594)
++|+.+.+-+..-...-...+++.++ +. +..+|++||+-. .....++.. .+.+.++ .-.+.++.++..
T Consensus 267 P~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i-~i~~~~~~~-----~~~l~~~~~ffEFip~~~~~~~~ 340 (528)
T PF03321_consen 267 PNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFI-GIPLDPEDP-----GYVLAPDSGFFEFIPVDEDEQNP 340 (528)
T ss_dssp TT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEE-EEES-CCC-------EEE-TTSSEEEEEE-STT----
T ss_pred CCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEE-EEecCCCCC-----ceEeecCCeEEEEEeccCCcccc
Confidence 47886666555555555666666664 33 456899999633 222222211 1122222 234445533221
Q ss_pred ---CCC-----CCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcC--CC--cEEEEeccCceeEcCCc
Q 007672 457 ---YSP-----LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP--NG--VVKIIDRKKNLIKISQG 524 (594)
Q Consensus 457 ---~~~-----~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~--dG--~l~~~GR~~d~i~~~~G 524 (594)
... +-.|+.-||+++.. .|.|+ |+.||++++.. ++ .+.|+||.+.++.+ .|
T Consensus 341 ~~~~~~l~~~ele~G~~YelviTt~---~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l-~g 403 (528)
T PF03321_consen 341 SEQPKTLLLHELEVGEEYELVITTN---SGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL-FG 403 (528)
T ss_dssp ---SSSEEGGG--TT-EEEEEEEST---TS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-S-SS
T ss_pred cCCCceecHHHhcCCCeEEEEEecc---cceee-------------eecCCEEEEeeccCCCcEEEEeccCCceeec-ce
Confidence 111 12345667888763 34443 89999999853 34 69999999999998 79
Q ss_pred eeechHHHHHHHhcC-----CCccceEEeec
Q 007672 525 EYVALEYLENVYCVA-----PIIEDPQVNVS 550 (594)
Q Consensus 525 ~~v~~~~iE~~l~~~-----p~V~~~~V~g~ 550 (594)
++++-.+|+++|.+. -.+.+..+...
T Consensus 404 Ekl~e~~v~~av~~~~~~~~~~~~~f~~~~~ 434 (528)
T PF03321_consen 404 EKLSEEQVQEAVARALQETGLELRDFTVAPD 434 (528)
T ss_dssp --EEHHHHHHHHHHHHHCTT-EEEEEEEEEE
T ss_pred eecCHHHHHHHHHHHHHhcCCceeeEEEEee
Confidence 999999999999864 23456666644
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0016 Score=69.61 Aligned_cols=141 Identities=16% Similarity=0.098 Sum_probs=83.9
Q ss_pred HhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEe-eecccCCCCceeccCCCCccccCccccCccCce-EEeeecCCCC
Q 007672 380 RLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQ-GYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE-LRLEEVPEMG 456 (594)
Q Consensus 380 ~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~-~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~i~d~~~~~ 456 (594)
++=+++++|.+-...-...-...++..+ |+++.. .||+||+-...-..+..... ...+..+|++. .+.+++++++
T Consensus 290 rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~p~--~~sy~L~p~~~yFEFip~~~~~ 367 (606)
T PLN02247 290 RLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPS--DVSYTLLPNMAYFEFLPVDKNN 367 (606)
T ss_pred HhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCCcc--CCceeecCCcEEEEEeecCCCc
Confidence 3447899888766555555556666555 666555 79999964332222211111 12223334332 2233322221
Q ss_pred CC---------------------------CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEc----C
Q 007672 457 YS---------------------------PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL----P 505 (594)
Q Consensus 457 ~~---------------------------~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~----~ 505 (594)
.. .+..|+.=||+|+. +.|.++ ||.||+.++. .
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt---~~GLYR-------------YrlGDvv~V~GF~n~ 431 (606)
T PLN02247 368 GEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTT---FTGLYR-------------YRVGDILMVTGFYNN 431 (606)
T ss_pred ccccccccccccccccccccccCceecHHHccCCCeEEEEEEe---cCceEE-------------EecCCEEEEeeecCC
Confidence 00 11233556677765 223222 8999999884 3
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcC
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA 539 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~ 539 (594)
.-.|.|+||.+.+..+ .|+|++-.++-+++.+.
T Consensus 432 ~P~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~a 464 (606)
T PLN02247 432 APQFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQA 464 (606)
T ss_pred CceEEEEecCCceeec-ccccCCHHHHHHHHHHH
Confidence 3579999999999998 79999999998888754
|
|
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00042 Score=74.55 Aligned_cols=133 Identities=14% Similarity=0.154 Sum_probs=77.2
Q ss_pred Cc---eeEEEEccCCCCHHHHHHHHHhc-CC-ceEeeecccCCCCceeccCCCCccccCccccC--ccCceEEeeecCCC
Q 007672 383 GR---LRLVISGGAPLSTEVEEFLRVTC-CA-FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV--SVYSELRLEEVPEM 455 (594)
Q Consensus 383 ~s---lr~i~~~G~~l~~~~~~~~~~~~-~~-~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~--~~~~~~~i~d~~~~ 455 (594)
++ +..++.||.. .-...++..+ +. .+..+|++||+-...-..+.... ..++.. +.+.-.+.++.++.
T Consensus 302 Pnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~~~p---~~~~~~l~~~~~ffEFiP~~~~ 375 (597)
T PLN02249 302 PNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNPMCKP---SEVSYTIMPNMAYFEFLPHNHD 375 (597)
T ss_pred CCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCCCCCC---CCcceEecCCcEEEEeeecccC
Confidence 57 5556666644 4445555544 34 35668999996433222211111 111111 22344444442211
Q ss_pred C--------CC---CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcC----CCcEEEEeccCceeE
Q 007672 456 G--------YS---PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIK 520 (594)
Q Consensus 456 ~--------~~---~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~----dG~l~~~GR~~d~i~ 520 (594)
+ .. .+..|+.=||+|+. ..|-|+ |+.||..++.. --.|.|.||.+.++.
T Consensus 376 ~~~~~~~~~~v~l~eVe~G~~Y~lVvTT---~~GLyR-------------Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls 439 (597)
T PLN02249 376 GDGALDETSLVELADVEVGKEYELVITT---YAGLYR-------------YRVGDILRVTGFHNSAPQFKFIRRKNVLLS 439 (597)
T ss_pred CcccCCCCcEecHHHcCCCCeEEEEEEc---ccceeE-------------eecCCEEEEeeccCCCcEEEEEccCCccee
Confidence 1 00 11123556677765 233332 89999999853 236899999999999
Q ss_pred cCCceeechHHHHHHHhc
Q 007672 521 ISQGEYVALEYLENVYCV 538 (594)
Q Consensus 521 ~~~G~~v~~~~iE~~l~~ 538 (594)
+ .|++++-.+++.+|.+
T Consensus 440 ~-~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 440 I-ESDKTDEADLQKAVEN 456 (597)
T ss_pred c-ccccCCHHHHHHHHHH
Confidence 7 7999999999998876
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0035 Score=66.99 Aligned_cols=142 Identities=15% Similarity=0.026 Sum_probs=83.7
Q ss_pred HHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEe-eecccCCCCceeccCCCCccccCccccCccCceE-EeeecCCC
Q 007672 379 ARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQ-GYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL-RLEEVPEM 455 (594)
Q Consensus 379 ~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~-~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~i~d~~~~ 455 (594)
.++=+++++|.+-...-...-...++..+ |+++.. .|++||+-...-..+ ..... ...+..+|++.. +.++++++
T Consensus 300 ~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P-~~~p~-~~sy~L~p~~~yFEFip~~~~ 377 (612)
T PLN02620 300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNP-LCKPS-EVSYTLIPTMAYFEFLPVHRN 377 (612)
T ss_pred HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCC-CCCcc-cceeeecCCcEEEEEeeccCc
Confidence 34447899888766655555556665544 676555 799999643332222 11110 122233333322 23321211
Q ss_pred CC-------------------C---CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEc----CCCcE
Q 007672 456 GY-------------------S---PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL----PNGVV 509 (594)
Q Consensus 456 ~~-------------------~---~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~----~dG~l 509 (594)
+. + .+..|+.=||+|+. +.|.|+ ||.||+.++. ..-.+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt---~~GLyR-------------YrlGDvv~V~Gf~n~~P~~ 441 (612)
T PLN02620 378 NGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT---YAGLYR-------------YRVGDVLRVAGFKNKAPQF 441 (612)
T ss_pred ccccccccccccccccccCccccHHHccCCCeEEEEEEe---cCceEE-------------EecCCEEEEeeecCCCceE
Confidence 00 0 01234556777765 223322 8999999884 23579
Q ss_pred EEEeccCceeEcCCceeechHHHHHHHhcC
Q 007672 510 KIIDRKKNLIKISQGEYVALEYLENVYCVA 539 (594)
Q Consensus 510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~ 539 (594)
.|+||.+-+..+ .|+|++-.++-.++.+.
T Consensus 442 ~Fv~R~~~~lsi-~gEK~tE~~l~~Av~~a 470 (612)
T PLN02620 442 SFICRKNVVLSI-DSDKTDEVELQNAVKNA 470 (612)
T ss_pred EEEeecCceeec-ccccCCHHHHHHHHHHH
Confidence 999999999998 79999999988887653
|
|
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=97.62 E-value=1.3e-05 Score=61.09 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCccceEEeecCCc------hhhccccccccee-----eeEeeeec--------Cc-eeeecccc
Q 007672 531 YLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGIL-----EWSCWFIP--------GT-LFTCSATK 584 (594)
Q Consensus 531 ~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~~-----~~~~~~~p--------~~-i~~~~~gk 584 (594)
|||++|.+||+|.||+|++.+++ ++++.. ..-.+. .+++|++| +. ||+|++||
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~GK 73 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSGK 73 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-eecccccchhhhCCCcceeeEEEEccccCcCCCCCCCC
Confidence 79999999999999999999875 444433 111111 22445555 34 99999998
|
... |
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.048 Score=43.88 Aligned_cols=63 Identities=21% Similarity=0.163 Sum_probs=34.9
Q ss_pred ceeechHHHHHHHhcCCCcc-ceEEeecCC----c-hhhcccc----------------------cccceeeeEeeeecC
Q 007672 524 GEYVALEYLENVYCVAPIIE-DPQVNVSCS----S-CAMRRRH----------------------QKVGILEWSCWFIPG 575 (594)
Q Consensus 524 G~~v~~~~iE~~l~~~p~V~-~~~V~g~~~----~-~~~~~~~----------------------~~~~~~~~~~~~~p~ 575 (594)
|.+|+|.+||++|.++|++. +..++-... . .+.++.. ..+++.--+.++-|+
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~~V~lv~~g 80 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRPEVELVPPG 80 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-EEEEEE-TT
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceEEEEEECCC
Confidence 78999999999999999998 555542211 1 1111111 222223336699999
Q ss_pred ceeeeccccccc
Q 007672 576 TLFTCSATKLYP 587 (594)
Q Consensus 576 ~i~~~~~gk~~r 587 (594)
+||++ .||..|
T Consensus 81 tLpr~-~~K~~R 91 (96)
T PF14535_consen 81 TLPRS-EGKAKR 91 (96)
T ss_dssp -S----SSSS-S
T ss_pred CccCC-CCcceE
Confidence 99998 578776
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.74 Score=48.33 Aligned_cols=96 Identities=17% Similarity=0.145 Sum_probs=71.2
Q ss_pred CCCCCCcEEE--eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch--hHHHHHHHHHhcCCEEeecCCCCChhHHHHH
Q 007672 68 DGKFGPYVWK--TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFI 143 (594)
Q Consensus 68 d~~~~~~~~~--Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~--~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~ 143 (594)
.|.+|.++.+ |..++...+..++..+...|+++||++....+.+. ......+++...|+.++++++.. .+.+...
T Consensus 84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~ 162 (422)
T TIGR02155 84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL 162 (422)
T ss_pred CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence 5778887754 55666666666777788889999999887665443 22334677889999998887654 5778899
Q ss_pred HhhcCceEEEEcchhHHHHhc
Q 007672 144 LDHAEIDFVFVQDKKVKELLS 164 (594)
Q Consensus 144 l~~~~~~~ii~~~~~~~~~~~ 164 (594)
|++.++++++........+..
T Consensus 163 i~~~~~t~l~~~Ps~l~~L~~ 183 (422)
T TIGR02155 163 IQDFKPDIIMVTPSYMLNLLE 183 (422)
T ss_pred HHHHCCCEEEEcHHHHHHHHH
Confidence 999999999999887665543
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.63 Score=47.94 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=98.4
Q ss_pred CCccccccccCCCCCCCCCCcCcHHHHH-------HHHHHcCCCC-------cceEeecccCCCCCCc--EEEeHHHHHH
Q 007672 21 VGPVYRNLLASNGFPSVDSDLNTAWDIF-------SMSVQKYPGN-------RMLGWRPFVDGKFGPY--VWKTYKEVYE 84 (594)
Q Consensus 21 ~~~~~r~~~~~~~~~~~~~~~~tl~~~l-------~~~a~~~pd~-------~a~~~~~~~d~~~~~~--~~~Ty~el~~ 84 (594)
++|.||-++...++ .|....++.|+- ..-.+++|.. -.+.... ..|.+|.+ .-+|+.+...
T Consensus 41 NsPfYr~~f~~~~v--~p~~i~~l~Dl~klP~t~K~~lre~ypf~~~~~~~~~i~~iha-SSGTTGkPt~~~~t~~D~~~ 117 (438)
T COG1541 41 NSPFYRKKFKEAGV--DPDDIKTLEDLAKLPFTTKDDLRENYPFGDFAVPKEEIVRIHA-SSGTTGKPTVFGYTAKDIER 117 (438)
T ss_pred cCHHHHHHHHHcCC--ChHHhhCHHHHHhCCCCcHHHHHHhCCcccccccccceEEEEc-cCCCCCCceeeecCHHHHHH
Confidence 67888888766533 344455555543 1223345522 1221211 13445544 3679999999
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEeCCch--hHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHH
Q 007672 85 EVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162 (594)
Q Consensus 85 ~~~~la~~L~~~Gi~~gd~V~i~~~n~~--~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 162 (594)
-+..+|+.|...|..+||+|.+...-++ .-+-..+|+.++|+.++|+.+. .-+.-..++++.++++|.+..+....+
T Consensus 118 wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI~~tps~~l~l 196 (438)
T COG1541 118 WAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVIAATPSYLLYL 196 (438)
T ss_pred HHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEEEEChHHHHHH
Confidence 9999999999999999999988876332 1267888999999999999884 345667899999999999999877665
Q ss_pred hccc
Q 007672 163 LSPD 166 (594)
Q Consensus 163 ~~~~ 166 (594)
.+.+
T Consensus 197 ae~~ 200 (438)
T COG1541 197 AEEA 200 (438)
T ss_pred HHHH
Confidence 4444
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=87.76 E-value=7 Score=41.35 Aligned_cols=91 Identities=12% Similarity=0.030 Sum_probs=68.2
Q ss_pred CCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh--HHHHHHHHHhcCCEEeecCCCCChhHHHHH
Q 007672 68 DGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVPLYDTLGPGAVNFI 143 (594)
Q Consensus 68 d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~--~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~ 143 (594)
.|.+|.++ .+|..++...+...++.+...|+.+||++.+..+.+.. .....+++...|+.+++... ......+
T Consensus 95 SGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~ 171 (445)
T TIGR03335 95 SGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRI 171 (445)
T ss_pred CCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHH
Confidence 46677665 46888898888888888888899999999998876643 23456788899998776543 2345678
Q ss_pred HhhcCceEEEEcchhHHH
Q 007672 144 LDHAEIDFVFVQDKKVKE 161 (594)
Q Consensus 144 l~~~~~~~ii~~~~~~~~ 161 (594)
+++.++..++........
T Consensus 172 i~~~~~t~l~~~ps~ll~ 189 (445)
T TIGR03335 172 IESYRPTGIVASVFKLLR 189 (445)
T ss_pred HHHhCCCEEEECHHHHHH
Confidence 899999998887665443
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=84.41 E-value=18 Score=38.82 Aligned_cols=119 Identities=9% Similarity=-0.034 Sum_probs=80.7
Q ss_pred CCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeecC
Q 007672 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPLY 132 (594)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~-~~~~~A~~~~G~~~v~i~ 132 (594)
++.++++.. ..+.+|.++ .+|+..+...+..... ..+++++|++....+..-.+ +...++++..|+..+..+
T Consensus 166 ~~~~~~i~~--TSGtTG~PK~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~ 240 (521)
T PRK06187 166 ENDAAAMLY--TSGTTGHPKGVVLSHRNLFLHSLAVCA---WLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPR 240 (521)
T ss_pred ccceEEEEE--CCCCCCCCceEEeehHHHHHHHHHHHH---hhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecC
Confidence 345666544 256677665 5688887766665555 44789999988887755322 444556888999888776
Q ss_pred CCCChhHHHHHHhhcCceEEEEcchhHHHHhccccc---ccccccEEEEec
Q 007672 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR---SAQRLRVMVCFT 180 (594)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~---~~~~~~~v~~~~ 180 (594)
.. +++.+...+++.+++.+++.......+...... ....++.++..+
T Consensus 241 ~~-~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~G 290 (521)
T PRK06187 241 RF-DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGG 290 (521)
T ss_pred CC-CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcC
Confidence 64 889999999999999999988877666443322 223455544433
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=83.12 E-value=17 Score=38.92 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=75.1
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch--hHHHHHHHHHhcCCEEee
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVP 130 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~--~~~~~~~A~~~~G~~~v~ 130 (594)
.++.++++.. ..+.+|.++ .+|+..+...+..+... .++++++++...++..- .+...+++++..|+.+++
T Consensus 164 ~~~~~a~i~~--TSGtTG~PK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 238 (513)
T PRK07656 164 DPDDVADILF--TSGTTGRPKGAMLTHRQLLSNAADWAEY---LGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILP 238 (513)
T ss_pred CCCceEEEEe--CCCCCCCCCEEEEecHHHHHHHHHHHHh---hCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEe
Confidence 4456666554 146677655 67888887666554433 37889999988877543 334567889999998776
Q ss_pred cCCCCChhHHHHHHhhcCceEEEEcchhHHHHhc
Q 007672 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (594)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (594)
. +..+++.+...+++.++++++........+..
T Consensus 239 ~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 271 (513)
T PRK07656 239 L-PVFDPDEVFRLIETERITVLPGPPTMYNSLLQ 271 (513)
T ss_pred c-CcCCHHHHHHHHHHhCCeEEechHHHHHHHHc
Confidence 5 55678999999999999999888877766544
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=82.00 E-value=15 Score=38.31 Aligned_cols=116 Identities=9% Similarity=-0.020 Sum_probs=79.0
Q ss_pred CCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch-hHHHHHHHHHhcCCEEeecC
Q 007672 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP-QWVEAMEACNALSLICVPLY 132 (594)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~-~~~~~~~A~~~~G~~~v~i~ 132 (594)
+++++++.. ..+.+|.++ .+|+..+...+..+...+ +++++|++....+-.- ..+..+++++..|+..+..+
T Consensus 110 ~~~~~~i~~--TSGtTG~PK~v~~s~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~ 184 (436)
T TIGR01923 110 MDQIATLMF--TSGTTGKPKAVPHTFRNHYASAVGSKENL---GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVD 184 (436)
T ss_pred cCceEEEEe--CCCCCCCCcEEEEehHHHHHHHHHHHhhc---CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecc
Confidence 455666544 156677665 778888887777666544 7899999888776542 23345678889999888775
Q ss_pred CCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEec
Q 007672 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180 (594)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~ 180 (594)
+. +.+...+++.+++.+.........+....... ..++.++..+
T Consensus 185 ~~---~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~-~~l~~~~~~G 228 (436)
T TIGR01923 185 KF---NQLLEMIANERVTHISLVPTQLNRLLDEGGHN-ENLRKILLGG 228 (436)
T ss_pred hH---HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCCC-CceEEEEECC
Confidence 43 48888999999999998887766654433222 4555555533
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 594 | ||||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 2e-21 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 1e-19 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 6e-19 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 5e-17 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 6e-17 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 2e-15 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 3e-15 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 5e-15 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 5e-15 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 6e-15 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 1e-14 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 6e-14 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 8e-14 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 8e-14 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 9e-14 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 3e-13 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 4e-13 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 5e-13 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 2e-12 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 2e-12 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 1e-11 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 7e-11 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 1e-10 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 2e-10 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 2e-10 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 9e-10 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 4e-09 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 1e-08 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 2e-08 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 6e-07 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 1e-06 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 2e-06 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 3e-06 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 4e-06 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 1e-05 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 4e-05 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 3e-04 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 3e-04 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 4e-04 |
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 235 bits (602), Expect = 1e-70
Identities = 106/507 (20%), Positives = 169/507 (33%), Gaps = 100/507 (19%)
Query: 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG 97
D + + P TY ++ + L A G
Sbjct: 12 DDKMKNIGWMLRQRATVSPR------LQAYVEPSTDVRM-TYAQMNALANRCADVLTALG 64
Query: 98 AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157
G RV + N ++ L + VP+ L V+FIL + V
Sbjct: 65 IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA- 123
Query: 158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP 217
+R V I S E L +E +
Sbjct: 124 ---PSAP----VIDAIR--------AQADPPGTVTDWIGADSLAERLRSAAADE-PAVEC 167
Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
+ IMYTSGT+G PKGVV THE++ + S +D + D L LP+ H
Sbjct: 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID-----VRYRDRLLLPLPMFH 222
Query: 278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
+ + RG ++ D + ++E + + VP +
Sbjct: 223 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL------------- 269
Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
N + + R I+GGAP+
Sbjct: 270 --------------------NF------------MRQVPEFAELDAPDFRYFITGGAPMP 297
Query: 397 TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL-----E 450
+ + VQGY LTE+CG T+ ++ + G+AG ++++++ +
Sbjct: 298 EALIKIYAAKNIEV-VQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV 356
Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510
GEV ++ L Y+ P+ TR++ +GWF TGDIG+I G +
Sbjct: 357 IRE---------HGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLY 407
Query: 511 IIDRKKNLIKISQGEYVALEYLENVYC 537
I DR K++I IS G ENVY
Sbjct: 408 IKDRLKDMI-ISGG--------ENVYP 425
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 9e-68
Identities = 95/502 (18%), Positives = 147/502 (29%), Gaps = 103/502 (20%)
Query: 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
++ + + P + L T+ E+ V + + L A G P RV
Sbjct: 6 EMLRRAATRAPDHCAL-----AVP-ARGLRL-THAELRARVEAVAARLHADGLRPQQRVA 58
Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
+ N V A+ A + L + +N L AE+ +
Sbjct: 59 VVAPNSADVVIAILALHRLGAVPAL---------LNPRLKSAELAELIK----------- 98
Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ----PFN 221
V +G + + + G+ P
Sbjct: 99 RGEM----TAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQ 154
Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--L 279
I YTSGT+G PK ++ + V + Q + +V L +PL H+
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFM---STQVGLRHGRHNVVLGLMPLYHVVGF 211
Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
V+ G V + + + T L P
Sbjct: 212 FAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHL---------------- 255
Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
LA A +L LR V GA + V
Sbjct: 256 ---------------DA-----------LAAAAAHAGSSLKL-DSLRHVTFAGATMPDAV 288
Query: 400 -EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
E + V YG TE + P GT +SE+R+ V G
Sbjct: 289 LETVHQHLPGEK-VNIYGTTEAMNSLYMRQPK----TGTEMAPGFFSEVRI--VRIGGGV 341
Query: 459 PLDDPP--CGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 515
GE+ V + F GY P T E + DGW+ T D+ P G V+I+ R
Sbjct: 342 DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRV 401
Query: 516 KNLIKISQGEYVALEYLENVYC 537
++I IS G EN++
Sbjct: 402 DDMI-ISGG--------ENIHP 414
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 1e-66
Identities = 91/497 (18%), Positives = 161/497 (32%), Gaps = 96/497 (19%)
Query: 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
Q+ + G + TY+ +Y E + L A RVG
Sbjct: 5 FWLYKQAQQNGH------HIAI--TDGQESY-TYQNLYCEASLLAKRL---KAYQQSRVG 52
Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
+Y N Q + + AC ++ + L P + + ++ +F L
Sbjct: 53 LYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL----PLELR 108
Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
+ + +T S + + + + +I +I
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASI 168
Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
M+TSGT+G K V T G L D +LS LP+ HI +
Sbjct: 169 MFTSGTTGPQKAVPQTFRNHYASAIGCKESLG-----FDRDTNWLSVLPIYHISGLSVLL 223
Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
G +V + + + + T ++ VP+ + ++
Sbjct: 224 RAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWL----------MQQGLHEP 273
Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFL 403
++ L+ ++ GGA LS + E L
Sbjct: 274 YN--------------------------------------LQKILLGGAKLSATMIETAL 295
Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL--EEVPEMGYSPL 460
+ + +G+TETC P+ T G S ++++
Sbjct: 296 QYNLP--IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH----- 348
Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
GE+ ++G + +GY D + +G+F+TGDI +I G V I DR+K+LI
Sbjct: 349 -----GELMIKGANVMNGYLYPTD-LTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLI- 401
Query: 521 ISQGEYVALEYLENVYC 537
IS G EN+Y
Sbjct: 402 ISGG--------ENIYP 410
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 1e-65
Identities = 93/502 (18%), Positives = 164/502 (32%), Gaps = 109/502 (21%)
Query: 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
D++ + +P R T+++ ++ S L G G RV
Sbjct: 10 DVYRRNAALFPD------RTAF--MVDGVRL-THRDYLARAERLASGLLRDGVHTGDRVA 60
Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
I NC + +E + A + I +P+ L + F+L V +++++
Sbjct: 61 ILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVA-GTDYRDIVAG 119
Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
S ++ G + F L + I
Sbjct: 120 VLPSLGGVKKAYA--------------IGDGSGPFAPFKDLASDTPFSAPEFGAADGFVI 165
Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
++T+ G P+G +++ + S + +T DV L LPL H+ +
Sbjct: 166 IHTAAVGGRPRGALISQGNLLIAQSSLVDAWR-----LTEADVNLGMLPLFHVTGLGLML 220
Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
+ G + D D+ K T++A + I L++ P
Sbjct: 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNI-------LDQAAP----- 268
Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR 404
A L LR V P + +E F
Sbjct: 269 ------------------------AQL-----------ASLRAVTGLDTPET--IERFEA 291
Query: 405 VTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-----EEVP--EMGY 457
A +G +ET G +T + +AG + + + +P E+G
Sbjct: 292 TCPNATFWATFGQSETSGLSTFAPYRDR--PKSAGRPLFWRTVAVVDAEDRPLPPGEVG- 348
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR--K 515
E+ +RG T+F GY+ N T+ + +GW HTGD+G+ +G + R +
Sbjct: 349 ---------EIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399
Query: 516 KNLIKISQGEYVALEYLENVYC 537
K LI + G ENVY
Sbjct: 400 KELI-KTGG--------ENVYP 412
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 9e-65
Identities = 110/472 (23%), Positives = 172/472 (36%), Gaps = 104/472 (22%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y E+ ++ + L A G + G RV + + A + +PL
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL------ 83
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
N E+D+ D +++VC S +A + G
Sbjct: 84 ---NTAYTLHELDYFIT-----------DAEP----KIVVCDPSKRDGIAAIAAKVGATV 125
Query: 198 Y--------SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
S + + ++ I+YTSGT+G KG +L+H+ +A+
Sbjct: 126 ETLGPDGRGSLTDAAAGAS-EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNS 184
Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDD 307
+ + T DDV + LP+ H L F RG+ + D + + D
Sbjct: 185 LTLVDYWR-----FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL-D 238
Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
LM + T+L GVP +
Sbjct: 239 LMA-RATVLMGVPTFY-------------------------------------------- 253
Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTV 426
LL ++ G +RL ISG APL + E+ T A L + YG+TET T
Sbjct: 254 -TRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVL-ERYGMTETN-MNTS 310
Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
D + G GP R+ PE G L G + V+G +F GY++ P+
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARV--TDPETG-KELPRGDIGMIEVKGPNVFKGYWRMPEK 367
Query: 486 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
T+ DG+F TGD+G+I G V I+ R K+L+ I+ G NVY
Sbjct: 368 TKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLV-ITGG--------FNVY 410
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 2e-62
Identities = 94/518 (18%), Positives = 173/518 (33%), Gaps = 110/518 (21%)
Query: 33 GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWK----TYKEVYEEVL 87
GFPS+ + D + +K+ + + + + E+ E
Sbjct: 10 GFPSLYYPKISLADRIDAAAEKFGE------KTAIISAEPKFPSEFPESMNFLEICEVTK 63
Query: 88 QIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHA 147
++ S + G G VG+ N +V + A ++ VP +N +
Sbjct: 64 KLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVP---------INPMYKSF 114
Query: 148 EIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK--------PYS 199
E++ + D + +V + L K + +TG++ S
Sbjct: 115 ELEHILN-----------DSEA----TTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNS 159
Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
E + G + + ++ I YT GT+G PKGV+LTH +A + +
Sbjct: 160 LSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG-- 217
Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAG 318
++ D + +P+ H + + G V + L +++ + K T
Sbjct: 218 ---LSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWA 274
Query: 319 VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378
VP P + L +
Sbjct: 275 VP------------------P----ALNVLVNTL-------------ESSNKTYDWS--- 296
Query: 379 ARLGGRLRLVISGGAPLSTEVEE-FLRVTCC------AFLVQGYGLTETCGPTTVCFPDE 431
L++ +G P++ + E L++ Q +G+TE C T P
Sbjct: 297 -----YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351
Query: 432 MCMVGTAGPVSVYSELRLEEV-PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
+ T G EL++ + E G + + GE+ +RG +F GY+K +E
Sbjct: 352 LDKSTTQGVPMSDIELKV--ISLEDGRELGVGES--GEIVIRGPNIFKGYWKREKENQEC 407
Query: 490 II-----DGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
+F TGD+G I G + DR K +IK
Sbjct: 408 WWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK 445
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 212 bits (543), Expect = 8e-62
Identities = 113/502 (22%), Positives = 179/502 (35%), Gaps = 86/502 (17%)
Query: 34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
P + +A +++Y + F + G +Y E E+ + AL
Sbjct: 15 KPFYPIEEGSAGTQLRKYMERYAKLGAI---AFTNAVTGVDY--SYAEYLEKSCCLGKAL 69
Query: 94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
+ G R+ + NC ++ + A + + P + + L ++ VF
Sbjct: 70 QNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129
Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
KV + ++ ++ +V S + D F+
Sbjct: 130 SSKKGLDKVITV----QKTVTTIKTIVILDSKVDYRG---------YQCLDTFIKRNTPP 176
Query: 211 EMEI--LPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
+ + + IM +SG++G PKGV LTHE I T S + + ++++
Sbjct: 177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVS 234
Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
L+ +P H + G V D L + K T + VP
Sbjct: 235 PGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVP--- 291
Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
+F L K +L + DL
Sbjct: 292 ---------------T----LFAILNKSELL------NKY------DL-----------S 309
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
L + SGGAPLS EV E R + QGYGLTET + P+ G +G V
Sbjct: 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETT-SAIIITPEGDDKPGASGKVV 368
Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
+ ++ + + L P GEVCV+G L GY NP+ T+E I +GW HTG
Sbjct: 369 PLFKAKV--IDLDTK-KSL--GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423
Query: 499 DIGQILPNGVVKIIDRKKNLIK 520
DIG I+DR K+LIK
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIK 445
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 4e-60
Identities = 116/502 (23%), Positives = 181/502 (36%), Gaps = 85/502 (16%)
Query: 34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
P + TA + ++++Y G F D + TY E +E +++ A+
Sbjct: 12 APFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVNI--TYAEYFEMSVRLAEAM 67
Query: 94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
+ G R+ + N Q+ + + + P D + ++ ++ VF
Sbjct: 68 KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127
Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL--HLGK 208
V +K+ + + ++ ++ S T Q S F+ HL
Sbjct: 128 VSKKGLQKILNVQ----KKLPIIQKIIIMDSKTDYQG---------FQSMYTFVTSHLPP 174
Query: 209 VNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
P+ F+ I IM +SG++G PKGV L H T S + F +++
Sbjct: 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQII 232
Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
D LS +P H + G V + + L + K VP
Sbjct: 233 PDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVP--- 289
Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
+F K L + DL
Sbjct: 290 ---------------T----LFSFFAKSTLI------DKY------DL-----------S 307
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
L + SGGAPLS EV E + + QGYGLTET + P+ G G V
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT-SAILITPEGDDKPGAVGKVV 366
Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
+ E ++ V + G L GE+CVRG + SGY NP+ T I DGW H+G
Sbjct: 367 PFFEAKV--VDLDTG-KTL--GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421
Query: 499 DIGQILPNGVVKIIDRKKNLIK 520
DI + I+DR K+LIK
Sbjct: 422 DIAYWDEDEHFFIVDRLKSLIK 443
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 205 bits (525), Expect = 1e-59
Identities = 100/465 (21%), Positives = 147/465 (31%), Gaps = 107/465 (23%)
Query: 83 YEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNF 142
Y E+ A A RV ++ + A+ A + VPL G +
Sbjct: 51 YAELAAAAGAT-AGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAH 109
Query: 143 ILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202
IL + V PD L + + +
Sbjct: 110 ILSDSAPSLVLA---------PPDAELPPALGALERVDVDVRARGAVPED---------- 150
Query: 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262
+ ++YTSGT+G PKG V+ +AT + +
Sbjct: 151 -------------GADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ----- 192
Query: 263 MTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320
T +DV + LPL H+ L I R G+ + T+L GVP
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR-ELNDGATMLFGVP 251
Query: 321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKAR 380
++ + +A+ L A+
Sbjct: 252 TMYHR------------------------------------------IAETLPADPELAK 269
Query: 381 LGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG 439
RL++SG A L E T + + YG+TET T D GT G
Sbjct: 270 ALAGARLLVSGSAALPVHDHERIAAATGRRVI-ERYGMTETL-MNTSVRADGEPRAGTVG 327
Query: 440 PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
ELRL + LD GE+ VRG LF+ Y PD T + DG
Sbjct: 328 VPLPGVELRLVEEDGTPIA-----ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDG 382
Query: 494 WFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYVALEYLENVYC 537
+F TGD+ P+G V+I+ RK +LI S G +
Sbjct: 383 FFRTGDMAVRDPDGYVRIVGRKATDLI-KSGG--------YKIGA 418
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 2e-58
Identities = 96/463 (20%), Positives = 161/463 (34%), Gaps = 84/463 (18%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E + SALR G P R+ + + A ++ V L P
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
++L H+ V + + ++ SA+ + + + +A
Sbjct: 110 ADYVYMLTHSHARAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAP------ 162
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
++E + + +I +Y+SG++G PKG V TH A +L+
Sbjct: 163 -LFEELID-AAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAK 217
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPT 314
+ +DV S L F GA+ +A+ L+E +PT
Sbjct: 218 PILG-IAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPT 276
Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
+ GVP LY +L
Sbjct: 277 VFYGVP--------------------------TLYAN-------------------MLVS 291
Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
+ AR +R+ S G L E+ E F C ++ G G TE +
Sbjct: 292 PNLPARADVAIRICTSAGEALPREIGERFTAHFGCE-ILDGIGSTEM-LHIFLSNRAGAV 349
Query: 434 MVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
GT G PV Y E+ L VP E+G ++ ++G + Y+ N +
Sbjct: 350 EYGTTGRPVPGY-EIELRDEAGHAVPDGEVG----------DLYIKGPSAAVMYWNNREK 398
Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
+R + + W +GD LPNG R +++K+S G+YV+
Sbjct: 399 SRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVS 440
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 5e-58
Identities = 86/499 (17%), Positives = 158/499 (31%), Gaps = 115/499 (23%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y+E+ + + +LR G +PG + N + A L + V
Sbjct: 52 SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL------- 104
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ---KEMAVQTG 194
F +E++ + + L++ + + + E + + +
Sbjct: 105 --ALFSHQRSELNA-YASQIEPALLIADRQHALFSGDDFL--NTFVTEHSSIRVVQLLND 159
Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA--TFVSGV 252
++ + ++ + P + + GT+G PK + TH S
Sbjct: 160 SGEHNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE 218
Query: 253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF----------FRRGASVGYYHGDLN 302
+ T YL +P AH + F G +V D +
Sbjct: 219 IC-------QFTQQTRYLCAIPAAHN--------YAMSSPGSLGVFLAGGTV-VLAADPS 262
Query: 303 ALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
A L + + A VP W+
Sbjct: 263 A--TLCFPLIEKHQVNVTALVP--------------------------PAV---SLWLQA 291
Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGL 417
+ + LA L+L+ GGA LS + C L Q +G+
Sbjct: 292 LIEGESRAQLA--------------SLKLLQVGGARLSATLAARIPAEIGCQ-LQQVFGM 336
Query: 418 TETCGPTTVCFPDEMCMVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVC 469
E T ++ T G P+ E+ + +P E+G +
Sbjct: 337 AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVG----------RLM 386
Query: 470 VRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
RG F GYYK+P + +G++ +GD+ I P G + + R+K+ I GE +A
Sbjct: 387 TRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQI-NRGGEKIA 445
Query: 529 LEYLENVYCVAPIIEDPQV 547
E +EN+ P + +
Sbjct: 446 AEEIENLLLRHPAVIYAAL 464
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 198 bits (507), Expect = 1e-56
Identities = 113/501 (22%), Positives = 191/501 (38%), Gaps = 89/501 (17%)
Query: 34 FPSVD--SDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWKTYKEVYEEVLQIV 90
P + +L ++ + +P ++G G TY +V ++
Sbjct: 13 LPDIYIPKNLPL-HSYVLENLSNHSS------KPCLINGANGDVY--TYADVELTARRVA 63
Query: 91 SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
S L G + G + ++ + P++V A + I P + +
Sbjct: 64 SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123
Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
+ Q +++ D ++V +C S + E + N
Sbjct: 124 LLITQACYYEKVK--DFARESDVKV-MCVDSAPDGCL-----------HFSELTQADE-N 168
Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
E + P ++ + Y+SGT+G PKGV+LTH+ + T V+ + +DV L
Sbjct: 169 EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP-NLYFHSEDVIL 227
Query: 271 SFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
LP+ HI L+ ++ + ++ +L + + K ++ VP
Sbjct: 228 CVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVP-------- 279
Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
P + ++ K SP D K L LR++
Sbjct: 280 ----------P----VMMSIAK---------------SPDLD-------KHDLS-SLRMI 302
Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSV 443
SGGAPL E+ + A L QGYG+TE +C G G V
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362
Query: 444 YSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGD 499
+E+++ V PE G + L P GE+C+RG + GY +P+ T +I +GW HTGD
Sbjct: 363 NAEMKI--VDPETG-ASL--PRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD 417
Query: 500 IGQILPNGVVKIIDRKKNLIK 520
IG I + + I+DR K LIK
Sbjct: 418 IGYIDDDDELFIVDRLKELIK 438
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 9e-55
Identities = 77/534 (14%), Positives = 160/534 (29%), Gaps = 124/534 (23%)
Query: 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
I ++ VQ +P + G +Y E+ + + L G G
Sbjct: 31 PLTRILTVGVQSHPH------SLAI--ICGERQL-SYIELDRLSTNLATRLAEKGLGKGD 81
Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
+ N ++ A ++ + + E++ F++ + K L
Sbjct: 82 TALVQLPNVAEFYIVFFALLKAGVVVLN---------ALYSHRQYELNA-FIKQIQPKLL 131
Query: 163 LSPDCRSAQRLRVMV--CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
+ + + + + + + +++ ++
Sbjct: 132 IGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPAD 191
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
+ + G++G PK + TH S + + L LP H
Sbjct: 192 EVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-------GLNSNTRLLCALPAPHN 244
Query: 279 LDRVIEEYF----------FRRGASVGYYHGDLNALRDDLMEL----KPTLLAGVPRVFE 324
F G V + + + + + + VP
Sbjct: 245 --------FMLSSPGALGVLHAGGCV-VMAPNPEP--LNCFSIIQRHQVNMASLVPSAV- 292
Query: 325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 384
+ W+ + + L
Sbjct: 293 ----------------------------IMWLE--KAAQYKDQIQSL------------- 309
Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG-PV 441
+L+ GGA + + V C L Q +G+ E D + T G P+
Sbjct: 310 -KLLQVGGASFPESLARQVPEVLNCK-LQQVFGMAEGL-VNYTRLDDSDEQIFTTQGRPI 366
Query: 442 SVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
S E+++ EVP E+ G + RG F GYY++P+ + D
Sbjct: 367 SSDDEIKIVDEQYREVPEGEI----------GMLATRGPYTFCGYYQSPEHNSQVFDEDN 416
Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
++++GD+ Q P+G ++++ R K+ I GE +A E +E + + P + +
Sbjct: 417 YYYSGDLVQRTPDGNLRVVGRIKDQI-NRGGEKIASEEIEKLILLHPEVMHAAL 469
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 9e-53
Identities = 107/535 (20%), Positives = 179/535 (33%), Gaps = 130/535 (24%)
Query: 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
T D+ KY R + G W +Y+E+ ++ + + G +
Sbjct: 26 TFGDLLRDRAAKYGD------RIAI--TCGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76
Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
RV + N ++ E + A L + V +EI + F + +
Sbjct: 77 RVVVQLPNIKEFFEVIFALFRLGALPVF---------ALPSHRSSEITY-FCEFAEAAAY 126
Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPF 220
+ PD S R + + ++ ++ I +EFL L ++ +++ +
Sbjct: 127 IIPDAYSGFDYRSLA--RQVQSKLP--TLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
++ + + G++G K + TH+ S + VYL+ LP+AH
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-------WLDHSTVYLAALPMAHN 235
Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALR-------------DDLMEL----KPTLLAGVPR 321
+ S G L L DD L K T+ A VP
Sbjct: 236 --------Y---PLSSP---GVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPP 281
Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
+ + WM+ L+ L ++
Sbjct: 282 LA-----------------------------MVWMD--AASSRRDDLSSL--------QV 302
Query: 382 GGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG 439
GGA S E V C L Q +G+ E D +V T G
Sbjct: 303 L------QVGGAKFSAEAARRVKAVFGCT-LQQVFGMAEGL-VNYTRLDDPEEIIVNTQG 354
Query: 440 -PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-D 492
P+S Y E R+ +V G + G + RG GYYK + S D
Sbjct: 355 KPMSPYDESRVWDDHDRDVKP-GET-------GHLLTRGPYTIRGYYKAEEHNAASFTED 406
Query: 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
G++ TGDI ++ +G + + R K+ I GE VA E +EN P + D +
Sbjct: 407 GFYRTGDIVRLTRDGYIVVEGRAKDQI-NRGGEKVAAEEVENHLLAHPAVHDAAM 460
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 1e-52
Identities = 115/507 (22%), Positives = 189/507 (37%), Gaps = 93/507 (18%)
Query: 34 FPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSA 92
P + + + D ++ ++ L ++G G TY +V+ QI +
Sbjct: 52 LPDIYIPNHLSLHDYIFQNISEFATKPCL-----INGPTGHVY--TYSDVHVISRQIAAN 104
Query: 93 LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152
G V + NCP++V + A + P + + +
Sbjct: 105 FHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLI 164
Query: 153 FVQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 209
+ K+K L ++ + ++ + + E + + E
Sbjct: 165 ITEARYVDKIKPL-----QNDDGVVIVCIDDNESVPIPEGCL-------RFTELTQSTT- 211
Query: 210 NEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV- 265
E++ + + + Y+SGT+G PKGV+LTH+ + V+ V +D +
Sbjct: 212 EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVDGENPNLYFH 268
Query: 266 -DDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRV 322
DDV L LP+ HI L+ ++ A + ++N L + + K T+ VP
Sbjct: 269 SDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP-- 326
Query: 323 FEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLG 382
P I A+ K S + K L
Sbjct: 327 ----------------P----IVLAIAK---------------SSETE-------KYDLS 344
Query: 383 GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGT 437
+R+V SG APL E+ + A L QGYG+TE + G
Sbjct: 345 -SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGA 403
Query: 438 AGPVSVYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
G V +E+++ V P+ G L GE+C+RG + GY NP T E+I DG
Sbjct: 404 CGTVVRNAEMKI--VDPDTG-DSL--SRNQPGEICIRGHQIMKGYLNNPAATAETIDKDG 458
Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIK 520
W HTGDIG I + + I+DR K LIK
Sbjct: 459 WLHTGDIGLIDDDDELFIVDRLKELIK 485
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 5e-46
Identities = 124/500 (24%), Positives = 179/500 (35%), Gaps = 125/500 (25%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
G TY EVY+ +++ LRA G G RV G N + +EA A + +
Sbjct: 43 GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK---E 188
L P + +IL+HAE + D + L+ + ++ V E E
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYE 161
Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI--- 245
A+ P E C + YT+GT+G PKGVV +H +
Sbjct: 162 EALGEEADPVRVPE-------RAA----------CGMAYTTGTTGLPKGVVYSHRALVLH 204
Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------LDRVIEEYFFRRGASVG 295
+ S VD ++ DV L +P+ H+ L GA
Sbjct: 205 SLAASLVDGT------ALSEKDVVLPVVPMFHVNAWCLPYAATL----------VGAKQV 248
Query: 296 YYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351
L+ L+EL T AGVP V
Sbjct: 249 LPGPRLDP--ASLVELFDGEGVTFTAGVPTV----------------------------- 277
Query: 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP---LSTEVEEF-LRVTC 407
W+ + RL RLV+ G A L E + V
Sbjct: 278 ---WLAL------------ADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVR- 321
Query: 408 CAFLVQGYGLTETCGPTTVCFP----------DEMCMVGTAGPVSVYSELRLEEVPEMGY 457
QGYGLTET F +++ + G LR+ + E
Sbjct: 322 -----QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRP 375
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
P D GEV ++G + GYY N + TR ++ DG+F TGDI G V+I DR K
Sbjct: 376 VPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLK 435
Query: 517 NLIKISQGEYVA-LEYLENV 535
+LIK S GE+++ ++ LEN
Sbjct: 436 DLIK-SGGEWISSVD-LENA 453
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 7e-29
Identities = 83/442 (18%), Positives = 149/442 (33%), Gaps = 93/442 (21%)
Query: 78 TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
++E+ E Q + L + G + G RV + P+W + C LI +P +
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKEL--LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
+ + L ++ + D+ ++E+ ++ +C S LR+ + + + +
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS---LRIKLLVSEKSCD--------- 182
Query: 195 IKPYSWDEFLHL--GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
W F L + I +TSGTSG PK ++ ++
Sbjct: 183 ----GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238
Query: 253 DLFLDQFEDKMTVDDVYLSFLPLA---HILDRVIEEYFFRRGASVGYYHG---DLNALRD 306
+ + D+ + +IL ++E + GA + D +
Sbjct: 239 AGWTG-----LQASDIMWTISDTGWILNILCSLMEPWAL--GACTFVHLLPKFDPLVILK 291
Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
L + G P V+ R L + L YK
Sbjct: 292 TLSSYPIKSMMGAPIVY--------------RMLLQ---QDLSSYKF------------- 321
Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
L+ ++ G L E E + T + + YG TET G T
Sbjct: 322 ----------------PHLQNCVTVGESLLPETLENWRAQTGLD-IRESYGQTET-GLTC 363
Query: 426 VCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGY 479
+ G G S Y ++ + + G + L G++ +R K +FSGY
Sbjct: 364 MVSKTMKIKPGYMGTAASCY---DVQIIDDKG-NVLPPGTEGDIGIRVKPIRPIGIFSGY 419
Query: 480 YKNPDLTRESIIDGWFHTGDIG 501
NPD T +I ++ GD G
Sbjct: 420 VDNPDKTAANIRGDFWLLGDRG 441
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-27
Identities = 84/507 (16%), Positives = 144/507 (28%), Gaps = 129/507 (25%)
Query: 52 VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111
+ P + + + G + T+ ++Y L + L G+ G RV I
Sbjct: 34 ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92
Query: 112 PQWVEAMEACNALSLICVPLYDTLGPGAVN---FILDHAEIDFVFVQDKKVKELLSPDCR 168
++V A I VPL G +L + + V ++
Sbjct: 93 LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDV------ 146
Query: 169 SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW--DEFLHLGKVNEMEILPPQPFNICTIM 226
+ +A + G P S + L L N + + +
Sbjct: 147 -----------------VQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQ 189
Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
YTSG++ P GVV++H+ + + + + + +S+LP H
Sbjct: 190 YTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD------- 242
Query: 286 YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345
V P +L G P V ++ RP R
Sbjct: 243 -----MGLVIGI-------------CAP-ILGGYPAVLTSPVSFLQ------RPA--RWM 275
Query: 346 DALYKYK--LAWM-NMGYKQREASPLADLLAFRKVKARLGG----RLRLVISGGAPLSTE 398
+ + N + +L A R + G + ++SG +
Sbjct: 276 HLMASDFHAFSAAPNFAF---------ELAARRTTDDDMAGRDLGNILTILSGSERVQAA 326
Query: 399 -VEEFLRVTCCAF---------LVQGYGLTETC----------GPTTVCFPDEMCMVGTA 438
++ F F + Y L E P TV F E G A
Sbjct: 327 TIKRFAD----RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHA 382
Query: 439 GPVSVYSELRLEEV------------PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486
P + L + D GE+ V G + +GY++ PD +
Sbjct: 383 KPCAGGGATSLISYMLPRSPIVRIVDSDTC-IECPDGTVGEIWVHGDNVANGYWQKPDES 441
Query: 487 RESII------------DGWFHTGDIG 501
+ W TGD G
Sbjct: 442 ERTFGGKIVTPSPGTPEGPWLRTGDSG 468
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 90/496 (18%), Positives = 161/496 (32%), Gaps = 126/496 (25%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+++ + I + L+A GA+PG RV + A ++A C I VP+Y
Sbjct: 42 TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQE 101
Query: 138 GA---VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
I+ +++ V + +K+ + + + + + + E E+ +
Sbjct: 102 KLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA---IALESIELNRSSS 158
Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
+P + +I + YTSG++ PKGV+++H + ++ +
Sbjct: 159 WQPT-----------------SIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT 201
Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
M + + S+LP H + G ++ +M
Sbjct: 202 SFH-----MNDETIIFSWLPPHHDM-----------GLIGCILTPIYGGIQAIMMS---- 241
Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK--LAWM-NMGYKQREASPLADL 371
P F + PL + KYK ++ N Y D
Sbjct: 242 -----PFSFLQ------------NPL--SWLKHITKYKATISGSPNFAY---------DY 273
Query: 372 LAFRKVKARLGG----RLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG---------YGL 417
R + + G +G P+ E +E F + AF G YGL
Sbjct: 274 CVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQ----AFKEFGFRKEAFYPCYGL 329
Query: 418 TETC----------GPTTVCFPDEMCMVGTAGPVSVYSELRLEEV-------------PE 454
E T+ E S + V P+
Sbjct: 330 AEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPD 389
Query: 455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---------IDGWFHTGDIGQILP 505
P D GE+ V+ ++ GY+ P+ TR + + TGD+G L
Sbjct: 390 TL-IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG-FLH 447
Query: 506 NGVVKIIDRKKNLIKI 521
+ + R K+LI I
Sbjct: 448 ENELYVTGRIKDLIII 463
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 1e-14
Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 33/218 (15%)
Query: 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
V + N A+D+ + + P + W D ++ T+K++ + +
Sbjct: 51 VPENFNFAYDVVDVYARDSPEKLAMIW---CDDYGNEKIF-TFKDLKYYSDKAANFFVKH 106
Query: 97 GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
G G V + + + M + L I VP L + + ++ A + +
Sbjct: 107 GIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA 166
Query: 157 -----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
++V E +C + V G W +F +
Sbjct: 167 EDDVPEQVDEAH-AECGDIPLKKAKV---------------GGDVLEGWIDFRKELE-ES 209
Query: 212 MEILPPQPFNICT-------IMYTSGTSGDPKGVVLTH 242
I + T + ++SGT+G PK V +
Sbjct: 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET---CGPTTVCFPDEMCMVGTAG 439
L+ + G PL+ EV FL T L++G+G TET FP G+ G
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETVVTIAT----FPWMEPKPGSIG 396
Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGYYKNPDLTRESIIDG 493
P Y ++E + G + GE+ + LF Y K+P+ T E+ DG
Sbjct: 397 KPTPGY---KIELMDRDG-RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG 452
Query: 494 WFHTGDIG 501
++HTGD+
Sbjct: 453 YYHTGDMA 460
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 74.4 bits (182), Expect = 2e-14
Identities = 54/373 (14%), Positives = 102/373 (27%), Gaps = 53/373 (14%)
Query: 150 DFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KEMAVQTGIKPY----SWDEF 203
D+ D +K D + + + F+ T M Q P + ++
Sbjct: 6 DYSLEIDAVMKAAQINDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDL 65
Query: 204 LHLG-KVNEMEILPPQPF--------NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
+ + P + + + GT+G PK VV I +S
Sbjct: 66 RQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMS 125
Query: 255 FLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
L+ +P HI+ + +E R G D R L
Sbjct: 126 GYQHRP--GRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDID---PRWVKRSLSE 180
Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP--LADL 371
A V + + + ++ L R + +P L +L
Sbjct: 181 GDTATVRKYTHHLVDQVQNTLMNQDI--RFLV-------------------TTPPVLREL 219
Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQGYGLTETCGPTTVCFP 429
L +V ++ L + GG L+ + +F+ + YG T G +
Sbjct: 220 LKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279
Query: 430 DEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKT---LFSGYYKNPDL 485
S + + V ++ G V V + + +
Sbjct: 280 TSESQQVIYDSFSPFITYDV--VDSITA-QTVEYGERGNVIVTHLSPWAFYPRVAERDTA 336
Query: 486 TRESIIDGWFHTG 498
R + G+
Sbjct: 337 IRLPGVSGFAGDR 349
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 1e-11
Identities = 70/451 (15%), Positives = 124/451 (27%), Gaps = 127/451 (28%)
Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD-PKGVVLTHE---- 243
M +TG Y + + L V E + F+ + D PK ++ E
Sbjct: 7 MDFETGEHQYQYKDILS---VFEDAFV--DNFDCKDVQ-------DMPKSILSKEEIDHI 54
Query: 244 -TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------ILDRVIEEYFFRRGASVGY 296
VSG K ++ F+ ++ + E R S+
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMT 109
Query: 297 --YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP--------------- 339
Y + L +D V R+ + + +++AL ELRP
Sbjct: 110 RMYIEQRDRLYNDNQVFAKY---NVSRL-QPYLK-LRQALLELRPAKNVLIDGVLGSGKT 164
Query: 340 ------LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
+K+ W+N+ + L L + R S
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNI 223
Query: 394 PLSTE-VEEFLRVTCC------AFLVQGYGLTETCGPTTV-CFPDEMC--MVGT------ 437
L ++ LR LV L F + C ++ T
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAWNAF-NLSCKILLTTRFKQVT 278
Query: 438 -AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY--YKNPDLTRESIIDGW 494
+ + + L+ +P E K+L Y + DL RE +
Sbjct: 279 DFLSAATTTHISLDHHSM-TLTP------DE----VKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 495 FHTGDIGQILPNGVVKI-------IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
I + + +G+ D+ +I+ S L L +P
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS------LNVL-----------EPAE 370
Query: 548 NVSCSSCAMRRRHQKVGILEWSCWFIP-GTL 577
R+ ++ + S IP L
Sbjct: 371 --------YRKMFDRLSVFPPSAH-IPTILL 392
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 1e-09
Identities = 56/444 (12%), Positives = 117/444 (26%), Gaps = 157/444 (35%)
Query: 71 FGPYVWKTYKEVY--EEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS-LI 127
F + W K E VL+++ L + +N + +++ L L+
Sbjct: 182 FKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLL 238
Query: 128 CVPLY-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC--FTSLT- 183
Y + L +L + VQ+ K + C ++++ F +T
Sbjct: 239 KSKPYENCL------LVLLN-------VQNAKAWNAFNLSC------KILLTTRFKQVTD 279
Query: 184 ----AEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEI--LPPQ-----PF----------- 220
A +++ + DE L K + LP + P
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 221 NICTIMYTSGTSGD----------------------------PKGVVLTHETIATF---- 248
+ T + D P + ++
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 249 -VSGVDLFLDQFEDK-----------MTVDDVYLSFLPLA------HILDRVIEEYFFRR 290
S V + +++ +++ +YL H +++ Y +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPK 457
Query: 291 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKI--HEGIKKA-LEELRPLRRRIF-D 346
+ DL D + I H +K E L R +F D
Sbjct: 458 ----TFDSDDLIPPYLD------------QYFYSHIGHH--LKNIEHPERMTLFRMVFLD 499
Query: 347 ALYKYKLAWM-----NMGYKQREASPLADLLA-FRKVKARLGGRLRLVISGGAP----LS 396
++ + + + + L + K I P L
Sbjct: 500 ------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--------ICDNDPKYERLV 545
Query: 397 TEVEEFLR-----VTCCAF--LVQ 413
+ +FL + C + L++
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLR 569
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 4e-11
Identities = 59/326 (18%), Positives = 99/326 (30%), Gaps = 106/326 (32%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
I++TSGT+G PKGV ++H+ + +F + ++ + L+ P + D
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNW---MIEDAAFDVPKQPQMLAQPPYS--FD---- 200
Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
SV M PTL G +P+ E +
Sbjct: 201 -------LSV--------------MYWAPTLALGGTLFALPK-------------ELVAD 226
Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE- 398
++ +F + + + S + L G L+
Sbjct: 227 FKQ-LFTTIAQLPVGIWTS-----TPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVST 280
Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
+ A ++ YG TE TV +S E+ E V
Sbjct: 281 ARKLFERFPSAKIINAYGPTEA----TVA-------------LSAI-EITREMVDNYTRL 322
Query: 459 P------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWF---- 495
P +D+ GE+ V G + GY NP+ T E+
Sbjct: 323 PIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY 382
Query: 496 HTGDIGQILPNGV----------VKI 511
HTGDIG + + + +K
Sbjct: 383 HTGDIGSLTEDNILLYGGRLDFQIKY 408
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 87/485 (17%), Positives = 158/485 (32%), Gaps = 150/485 (30%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI------CVPL 131
+Y+E+ EE +I L+ GA G V +Y + V + + +P+
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG------VLKAGAAYLPV 544
Query: 132 YDTLGPGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
D P ++++L + + +++KE + + L +
Sbjct: 545 -DPKLPEDRISYMLADSAAACLLTH-QEMKEQAAELPYTGTTLFI--------------- 587
Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
+ + P + IMYTSGT+G PKG + TH I V
Sbjct: 588 --------DDQTRFEEQASDPATAIDPN--DPAYIMYTSGTTGKPKGNITTHANIQGLVK 637
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV----GYYHGDLNAL 304
VD + D +LS A D +++ A + + D L
Sbjct: 638 HVDYM------AFSDQDTFLSVSNYA--FDAFTFDFYASMLNAARLIIADEHTLLDTERL 689
Query: 305 RDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
D +++ ++ +F + + + ++ LR
Sbjct: 690 TDLILQENVNVMFATTALFNLLTD---AGEDWMKGLRC---------------------- 724
Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGP 423
++ GG S V + LR+ L+ YG TE
Sbjct: 725 -----------------------ILFGGERASVPHVRKALRIMGPGKLINCYGPTE---- 757
Query: 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP-------------LDD-----PP- 464
TV + + + ++P+ S L++ P
Sbjct: 758 GTVF-------------ATAH---VVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFG 801
Query: 465 -CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-------TGDIGQILPNGVVKIIDRKK 516
GE+C+ G + GY DLT+E I+ F TGD+ + LP+G ++ R
Sbjct: 802 AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRID 861
Query: 517 NLIKI 521
+ +KI
Sbjct: 862 DQVKI 866
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 58/322 (18%), Positives = 95/322 (29%), Gaps = 104/322 (32%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLSFLPLAHILDR 281
++YTSG++G PKGV ++ +++F + K + +L A D
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA--FDV 237
Query: 282 VIEEYF--FRRGAS--VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
I E F +R G G L+ L EL T VP + ++ E+
Sbjct: 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDA 293
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
L + GG ++
Sbjct: 294 PHLVY---------------------------------------------LGVGGEKMTP 308
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
++ + LV YG TE T+ S L + +G
Sbjct: 309 RTQQIWSSSDRVALVNVYGPTE----VTIG-------------CSAGRILPDSDTRCIG- 350
Query: 458 SP--------LDD------PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGW--FHTGD 499
P L GE+ + G + +GY PD I+G + TGD
Sbjct: 351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGD 410
Query: 500 IGQILPNGV----------VKI 511
I ++ + VK+
Sbjct: 411 IVRMDADSSILFLGRKDEQVKV 432
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 6e-08
Identities = 53/284 (18%), Positives = 91/284 (32%), Gaps = 84/284 (29%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
I+YTSG++G+PKGV ++ + +F + F ++ ++L+ P + D
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFP--VSGGKIFLNQAPFS--FD---- 196
Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
SV M+L P L +G + + K + +
Sbjct: 197 -------LSV--------------MDLYPCLQSGGTLHCVT-KDAVNKP--------KVL 226
Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
F+ L K L S + L L + G L + L
Sbjct: 227 FEELKKSGLNVWTS-----TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALL 281
Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
A + YG TE TV V+ E+ + + P
Sbjct: 282 ERFPKAKIFNTYGPTEA----TVA-------------VTSV-EITNDVISRSESLPVGFA 323
Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
+D+ P GE+ + G ++ GY P+LT +
Sbjct: 324 KPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEK 367
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 57/322 (17%), Positives = 87/322 (27%), Gaps = 101/322 (31%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
I ++SGT+G PK + TH I L L Q +L PL+ D
Sbjct: 169 INFSSGTTGRPKAIACTHAGI------TRLCLGQSFLAFAPQMRFLVNSPLS--FDAATL 220
Query: 285 EYF--FRRGASV---GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
E + G D LR + E +F + + + L
Sbjct: 221 EIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVD---LDPDCLGG 277
Query: 340 LRRRIF--DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
LR+ + D L + R+ R
Sbjct: 278 LRQLLTGGDIL---------------------SVPHVRRALLRHPRLH------------ 304
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV-------SVY---SEL 447
LV GYG TE T + + P+ +V
Sbjct: 305 -------------LVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHG 351
Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------TGD 499
+ + E + GE+ G L GY + TR S ++ + TGD
Sbjct: 352 QE--IAEPDRA-------GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGD 402
Query: 500 IGQILPNGV----------VKI 511
+ G VK+
Sbjct: 403 RARYDEQGRLRFIGRGDGQVKL 424
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 3e-07
Identities = 50/284 (17%), Positives = 95/284 (33%), Gaps = 84/284 (29%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
I+YTSG++G+PKGV +T+ + +F + F + V+L+ P + D
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFN--LQTGQVFLNQAPFS--FD---- 197
Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
SV M++ P+L+ G + I + + +
Sbjct: 198 -------LSV--------------MDIYPSLVTGGTLWAID-KDMIARP--------KDL 227
Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
F +L + + S L + ++ + G L E + +
Sbjct: 228 FASLEQSDIQVWTS-----TPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLI 282
Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
A ++ YG TE TV V+ + E + + P
Sbjct: 283 ERFPKATIMNTYGPTEA----TVA-------------VTGI-HVTEEVLDQYKSLPVGYC 324
Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
+ + P GE+ + G ++ GY +P+LT +
Sbjct: 325 KSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEK 368
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 5e-07
Identities = 60/330 (18%), Positives = 103/330 (31%), Gaps = 124/330 (37%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
++YTSGT+G+PKG +L H+ I+ F + +T D F ++ D +
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVF---FENSLN--VTEKDRIGQFASIS--FDASVW 239
Query: 285 EYF--FRRGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
E F GAS+ D + + + T++ P + E +
Sbjct: 240 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP------ERIL 293
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
++ +I+ G+ S
Sbjct: 294 SIQT---------------------------------------------LITAGSATSPS 308
Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
V ++ + YG TE TT+C + + +
Sbjct: 309 LVNKWKEKVT---YINAYGPTE----TTIC-------------ATTW---VATKETIGHS 345
Query: 458 SP------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-- 496
P +D+ GE+C+ G+ L GY+K P+LT + +D F
Sbjct: 346 VPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 405
Query: 497 -----TGDIGQILPNGV----------VKI 511
TGD + L +G VKI
Sbjct: 406 EKLYKTGDQARWLSDGNIEYLGRIDNQVKI 435
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
+Y+E++ +V + + L G + G V IY P+ AM AC
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 594 | |||
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.95 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.0 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 98.86 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.84 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.8 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.63 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 94.1 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 93.02 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 92.98 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 90.17 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 89.8 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 85.02 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 84.24 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 82.68 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 81.66 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 81.54 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 80.95 |
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-73 Score=614.43 Aligned_cols=492 Identities=21% Similarity=0.227 Sum_probs=378.8
Q ss_pred CCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCC--CCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 007672 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 109 (594)
Q Consensus 32 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~--~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~ 109 (594)
.++|..+....++.++|+++++++||++|+++. ++ ..+.++++||+||.++++++|+.|++.|+++||+|+|+++
T Consensus 9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 85 (549)
T 3g7s_A 9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP 85 (549)
T ss_dssp CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 456666667789999999999999999999987 52 2344578999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHH
Q 007672 110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189 (594)
Q Consensus 110 n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 189 (594)
|+++++++++||+++|++++|++|.++.+++.+++++++++++|++......+...... .....++..+..
T Consensus 86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~------- 156 (549)
T 3g7s_A 86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE------- 156 (549)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS-------
T ss_pred CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC-------
Confidence 99999999999999999999999999999999999999999999998876655433221 224555555432
Q ss_pred HhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEE
Q 007672 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY 269 (594)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (594)
..+++++...............++++++++|||||||.||+|+++|+++.+.+......+ ++..+|++
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~ 224 (549)
T 3g7s_A 157 -------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTI 224 (549)
T ss_dssp -------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEE
T ss_pred -------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEE
Confidence 235666665443222222222348999999999999999999999999999998887777 78899999
Q ss_pred EEecChhHHHHHHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 007672 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348 (594)
Q Consensus 270 ~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (594)
++.+|++|.+++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+.......
T Consensus 225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------- 291 (549)
T 3g7s_A 225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK------------- 291 (549)
T ss_dssp ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC-------------
T ss_pred EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc-------------
Confidence 999999999998888888999999999876 999999999999999999999999998764322110
Q ss_pred HHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHh----cC---CceEeeecccCCC
Q 007672 349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTETC 421 (594)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~----~~---~~i~~~yG~tE~~ 421 (594)
..++ +++|.+++||+++++++.+.+.+. ++ +.+++.||+||++
T Consensus 292 ----------------------~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~ 341 (549)
T 3g7s_A 292 ----------------------TYDW--------SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEAC 341 (549)
T ss_dssp ----------------------CCCC--------TTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGS
T ss_pred ----------------------cCCc--------cceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccc
Confidence 0112 289999999999999999999887 56 8999999999999
Q ss_pred CceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc---cCC--ccc
Q 007672 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WFH 496 (594)
Q Consensus 422 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~---~~g--~~~ 496 (594)
.+++...........++|.|+++++++|+|.+++. +++.|+.|||+|+|++++.||+++++.+++.| .+| ||+
T Consensus 342 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~ 419 (549)
T 3g7s_A 342 PMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGR--ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFR 419 (549)
T ss_dssp SEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCC--EECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEE
T ss_pred hhhhcCCccccCcCCCccccCCCCEEEEEeCCCCc--CCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEc
Confidence 98877665554555899999999999999944444 44566999999999999999999999999998 678 999
Q ss_pred cCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc----cccee
Q 007672 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ----KVGIL 566 (594)
Q Consensus 497 TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~----~~~~~ 566 (594)
|||+|++|+||+|++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++... ..+..
T Consensus 420 TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~ 498 (549)
T 3g7s_A 420 TGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEE 498 (549)
T ss_dssp EEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHH
T ss_pred cCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHH
Confidence 9999999999999999999999997 8999999999999999999999999998875 33443321 12222
Q ss_pred e--------eEeeeecC------ceeeeccccccccccccC
Q 007672 567 E--------WSCWFIPG------TLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 567 ~--------~~~~~~p~------~i~~~~~gk~~r~~~~~~ 593 (594)
+ ++.|++|+ .||+|++||++|++||+-
T Consensus 499 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 539 (549)
T 3g7s_A 499 DIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREK 539 (549)
T ss_dssp HHHHHHHTTCC-----CCCCEEEECC---------------
T ss_pred HHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHH
Confidence 2 24455555 589999999999999873
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-72 Score=608.62 Aligned_cols=498 Identities=24% Similarity=0.303 Sum_probs=400.8
Q ss_pred CCCccccccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCC
Q 007672 20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99 (594)
Q Consensus 20 ~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~ 99 (594)
.+..++++......+| ...++.++|.++++++||++|+++. ++ + +++||+||.++++++|++|++.|++
T Consensus 4 ~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv~ 72 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---AN--G--DVYTYADVELTARRVASGLNKIGIQ 72 (536)
T ss_dssp -CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CC--C--CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 3445777655444333 3488999999999999999999864 22 2 6899999999999999999999999
Q ss_pred CCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEe
Q 007672 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF 179 (594)
Q Consensus 100 ~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (594)
+||+|+|+++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++......+....... .. .++.+
T Consensus 73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~ 149 (536)
T 3ni2_A 73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCV 149 (536)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEES
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEe
Confidence 9999999999999999999999999999999999999999999999999999999987665553322211 22 34444
Q ss_pred cCCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccc
Q 007672 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259 (594)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~ 259 (594)
+... .....++++...... ........++++++++|||||||.||+|+++|+++++.+........ .
T Consensus 150 ~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~ 216 (536)
T 3ni2_A 150 DSAP-----------DGCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN-P 216 (536)
T ss_dssp SCCC-----------TTCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-C
T ss_pred cCCC-----------CCccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-c
Confidence 4321 124456666654322 22334567899999999999999999999999999988766433210 0
Q ss_pred cCCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhh
Q 007672 260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337 (594)
Q Consensus 260 ~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 337 (594)
...+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++.
T Consensus 217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------- 288 (536)
T 3ni2_A 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKS-------- 288 (536)
T ss_dssp SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTC--------
T ss_pred cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhC--------
Confidence 125778999999999999999865 6778999999999876 999999999999999999999999988642
Q ss_pred chHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeec
Q 007672 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYG 416 (594)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG 416 (594)
+..+..+++ +||.+++||+++++++.+.+.+.+ ++.+++.||
T Consensus 289 -----------------------------~~~~~~~l~--------~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 331 (536)
T 3ni2_A 289 -----------------------------PDLDKHDLS--------SLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG 331 (536)
T ss_dssp -----------------------------SCGGGSCCT--------TCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred -----------------------------cccccCCCc--------cceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence 111222233 899999999999999999999988 899999999
Q ss_pred ccCCCCceeccC----CCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-c
Q 007672 417 LTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I 491 (594)
Q Consensus 417 ~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~ 491 (594)
+||++.+++... .......+++|.|+++++++|+|.+++. +++.|+.|||+|+|++++.||+++++.+.+.| .
T Consensus 332 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~--~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~ 409 (536)
T 3ni2_A 332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGA--SLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDK 409 (536)
T ss_dssp CGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCC--BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred ccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCc--CCCCCCccEEEEeCcccchhhcCChhHHHhhccC
Confidence 999998765532 1122344889999999999999933343 44566999999999999999999999999999 8
Q ss_pred CCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--cc
Q 007672 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--KV 563 (594)
Q Consensus 492 ~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~~ 563 (594)
+|||+|||+|++|+||+|++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++... ..
T Consensus 410 ~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~ 488 (536)
T 3ni2_A 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQA 488 (536)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred CCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCC
Confidence 999999999999999999999999999997 7999999999999999999999999998764 44443322 12
Q ss_pred ceee--------eEe------eeecCceeeecccccccccccc
Q 007672 564 GILE--------WSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 564 ~~~~--------~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+..+ ++. +...+.||+|++||++|+++++
T Consensus 489 ~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 531 (536)
T 3ni2_A 489 TEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKE 531 (536)
T ss_dssp CHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHT
T ss_pred CHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHH
Confidence 1111 133 4445679999999999999987
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-72 Score=607.38 Aligned_cols=477 Identities=14% Similarity=0.180 Sum_probs=334.5
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..++.++|.++++++||++|+++. + +++||+||.++++++|+.|+++|+++||+|+|+++|+++++++++|
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHH----HHhcccccccccccEEEEecCCcHHHHHHHhhCCcc
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (594)
|+++|++++|+++.++.+++.+++++++++++|++..... .....+.........++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999876431 111111222244455555544311
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChh
Q 007672 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (594)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 276 (594)
...+.++...............++++++++|||||||.||+|+++|+++.+.+......+ ++.++|++++.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 123444444332222222455789999999999999999999999999999999888777 789999999999999
Q ss_pred HHHHHHH--HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007672 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (594)
Q Consensus 277 ~~~~~~~--~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (594)
|.+++.. .+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++.......
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------ 304 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKD------------------ 304 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHH------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccc------------------
Confidence 9999874 6778999999999876 999999999999999999999999998764322111
Q ss_pred HHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCcc
Q 007672 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~ 433 (594)
+++ +||.+++||+++++++.+.+.+.+++.+++.||+||++..+.........
T Consensus 305 -------------------~~~--------~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 305 -------------------QIQ--------SLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp -------------------HHT--------TCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred -------------------cCC--------cceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 122 89999999999999999999998999999999999998655444333333
Q ss_pred ccCccccCc-cCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEE
Q 007672 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (594)
Q Consensus 434 ~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~ 511 (594)
...++|.|+ ++++++|+| +++.. ++.|+.|||+|+|++++.||+++++.+++.| .+|||+|||+|++|+||+|++
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 434 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYRE--VPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV 434 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSCB--CCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred ccCCCceecCCCcEEEEEC-CCCCC--CCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence 347899996 899999999 66654 4456999999999999999999999999999 899999999999999999999
Q ss_pred EeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc-cccee---------eeEeeeecC
Q 007672 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ-KVGIL---------EWSCWFIPG 575 (594)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~-~~~~~---------~~~~~~~p~ 575 (594)
.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++... ..... .++.|++|+
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~~l~~~~~P~ 513 (544)
T 3o83_A 435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKLPD 513 (544)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHhCCCCcccCCc
Confidence 9999999996 8999999999999999999999999998775 34443321 11111 235566665
Q ss_pred ------ceeeecccccccccccc
Q 007672 576 ------TLFTCSATKLYPLRAEE 592 (594)
Q Consensus 576 ------~i~~~~~gk~~r~~~~~ 592 (594)
.||+|++||++|+++++
T Consensus 514 ~i~~v~~lP~t~~GKi~r~~L~~ 536 (544)
T 3o83_A 514 QIKLIESLPLTAVGKVDKKQLRS 536 (544)
T ss_dssp -----------------------
T ss_pred EEEEeccCCCCCCCCCcHHHHHH
Confidence 68999999999999987
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-72 Score=603.30 Aligned_cols=479 Identities=24% Similarity=0.314 Sum_probs=371.2
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..++.++|.++++++||++|+++. +. +..+++||+||.++++++|++|+++|+++||+|+|+++|+++++++++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 22 2347899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|++|.++.+++.+++++++++++|++.+....+.... ...+..+.++.+++... .....|
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------cccccH
Confidence 9999999999999999999999999999999999987665443222 22344556666554321 023356
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhh--hhhhccccCCCCCCcEEEEecChhHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
++++..... .....++++++++|||||||.||+|++||+++++..... ...+ ++.++|++++.+|++|.
T Consensus 161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~ 231 (541)
T 1v25_A 161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHV 231 (541)
T ss_dssp HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSH
T ss_pred HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhh
Confidence 555433211 134467899999999999999999999999998776542 2223 67889999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
+++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++........
T Consensus 232 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-------------------- 291 (541)
T 1v25_A 232 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR-------------------- 291 (541)
T ss_dssp HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCC--------------------
T ss_pred hHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCc--------------------
Confidence 998777788999999999864 8999999999999999999999999987654322111
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC-----
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----- 431 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~----- 431 (594)
+ ++||.+++||+++++++.+.+ +.+|+.+++.||+||++.+++......
T Consensus 292 -----------------l--------~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 345 (541)
T 1v25_A 292 -----------------L--------KTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESL 345 (541)
T ss_dssp -----------------C--------SSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred -----------------c--------hhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceeccccccccccc
Confidence 1 289999999999999999999 557999999999999998776654331
Q ss_pred -----ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcC
Q 007672 432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP 505 (594)
Q Consensus 432 -----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~ 505 (594)
.....++|+|+++++++|+| +++..++.+.++.|||+|+||+++.||+++++.+++.| .+|||+|||+|++|+
T Consensus 346 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~ 424 (541)
T 1v25_A 346 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424 (541)
T ss_dssp CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT
T ss_pred CccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC
Confidence 12347899999999999999 77766665445789999999999999999999999999 599999999999999
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc-ccccee---------eeE
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH-QKVGIL---------EWS 569 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~-~~~~~~---------~~~ 569 (594)
||+|++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++.. ...+.. .++
T Consensus 425 dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~~~L~ 503 (541)
T 1v25_A 425 EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFA 503 (541)
T ss_dssp TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------CCC
T ss_pred CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHhccCc
Confidence 9999999999999996 8999999999999999999999999998764 3444322 111111 234
Q ss_pred eeeec------Cceeeecccccccccccc
Q 007672 570 CWFIP------GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 570 ~~~~p------~~i~~~~~gk~~r~~~~~ 592 (594)
.|++| +.||+|++||++|+++++
T Consensus 504 ~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 532 (541)
T 1v25_A 504 KWQLPDAYVFAEEIPRTSAGKFLKRALRE 532 (541)
T ss_dssp TTTSCSBC--------------CCTTHHH
T ss_pred cccCCcEEEEeCCCCCCCccCeeHHHHHH
Confidence 45555 468999999999999875
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-72 Score=607.82 Aligned_cols=497 Identities=24% Similarity=0.270 Sum_probs=336.9
Q ss_pred CCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 007672 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111 (594)
Q Consensus 32 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~ 111 (594)
.+.|..+....|+.++|.++++++||++|++... ++..+ +++||+||.++++++|++|+++|+++||+|+|+++|+
T Consensus 10 ~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~ 85 (550)
T 3rix_A 10 GPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS 85 (550)
T ss_dssp CCCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC
T ss_pred CCCCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence 3445566667899999999999999999986220 22222 6899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHh
Q 007672 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (594)
Q Consensus 112 ~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 191 (594)
++++++++||+++|++++|+++.++.+++.+++++++++++|++......+.... ...+....++.++....
T Consensus 86 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 157 (550)
T 3rix_A 86 LQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD------- 157 (550)
T ss_dssp TTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC-------
T ss_pred ccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHH-hhCCCcceEEEEcCCcc-------
Confidence 9999999999999999999999999999999999999999999998776654332 23345666666654321
Q ss_pred hCCcceeeHHHHHhcccccc------cccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCC
Q 007672 192 QTGIKPYSWDEFLHLGKVNE------MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV 265 (594)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~ 265 (594)
.....++.++........ .+.....++++++++|||||||.||+|+++|++++..+......+ ...++.+
T Consensus 158 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~ 233 (550)
T 3rix_A 158 --YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIP 233 (550)
T ss_dssp --BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCT
T ss_pred --ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCC
Confidence 112345666654332211 111122457899999999999999999999999998877655431 1126778
Q ss_pred CcEEEEecChhHHHHHHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 007672 266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344 (594)
Q Consensus 266 ~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (594)
++++++.+|++|.+++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.
T Consensus 234 ~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------- 298 (550)
T 3rix_A 234 DTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS--------------- 298 (550)
T ss_dssp TCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHC---------------
T ss_pred CcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC---------------
Confidence 9999999999999999888889999999999876 999999999999999999999999998652
Q ss_pred HHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCc-eEeeecccCCCCc
Q 007672 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGP 423 (594)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~-i~~~yG~tE~~~~ 423 (594)
...+..+++ +||.+++||+++++++.+.+.+.++.. +++.||+||+++.
T Consensus 299 ----------------------~~~~~~~l~--------~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~ 348 (550)
T 3rix_A 299 ----------------------TLIDKYDLS--------NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 348 (550)
T ss_dssp ----------------------CGGGGSCCT--------TCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSE
T ss_pred ----------------------ccccccCcc--------cccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccc
Confidence 112222333 899999999999999999999988875 9999999999988
Q ss_pred eeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEE
Q 007672 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502 (594)
Q Consensus 424 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~ 502 (594)
++....... ..+++|.|+++++++|+|.+++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|+
T Consensus 349 ~~~~~~~~~-~~~~vG~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~ 425 (550)
T 3rix_A 349 ILITPEGDD-KPGAVGKVVPFFEAKVVDLDTG--KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY 425 (550)
T ss_dssp EEECCTTCC-CTTEEEEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEE
T ss_pred eecCCCCCC-CCCCcccccCCcEEEEEeCCCC--cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEE
Confidence 777655443 3489999999999999994334 445567999999999999999999999999999 899999999999
Q ss_pred EcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc--cccceeee------
Q 007672 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH--QKVGILEW------ 568 (594)
Q Consensus 503 ~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~--~~~~~~~~------ 568 (594)
+|+||+|++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++.. ...+..++
T Consensus 426 ~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~ 504 (550)
T 3rix_A 426 WDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVAS 504 (550)
T ss_dssp ECTTCCEEEC----------------------------------------------------------------------
T ss_pred EeCCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999997 8999999999999999999999999998875 3343322 22222222
Q ss_pred --------E-eeeecCceeeeccccccccccccC
Q 007672 569 --------S-CWFIPGTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 569 --------~-~~~~p~~i~~~~~gk~~r~~~~~~ 593 (594)
+ .+...+.||+|++||++|+++|+-
T Consensus 505 ~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~ 538 (550)
T 3rix_A 505 QVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREI 538 (550)
T ss_dssp ----------------------------------
T ss_pred hcccccccCCceEEEeecCCCCCcceeHHHHHHH
Confidence 1 145557899999999999999873
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-71 Score=604.36 Aligned_cols=484 Identities=16% Similarity=0.157 Sum_probs=378.0
Q ss_pred CCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 007672 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (594)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~ 117 (594)
+..++.+.++|+++|+++||++|+++. ++ .|..+++||+||.++++++|++|+++|+++||+|+|+++|+++++++
T Consensus 52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~ 127 (580)
T 3etc_A 52 PENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYC 127 (580)
T ss_dssp CSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHH
T ss_pred cccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 356677779999999999999999986 43 34558999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH--HHHhcccccccccc-cEEEEecCCcHHHHHHHhhCC
Q 007672 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTG 194 (594)
Q Consensus 118 ~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~ 194 (594)
++||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+.... ..++.. ..++.++... .
T Consensus 128 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~ 196 (580)
T 3etc_A 128 MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAH-AECGDIPLKKAKVGGDV----------L 196 (580)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHH-HHHCSCCCEEEEESSSC----------C
T ss_pred HHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHh-hhCCCcceEEEEeCCcc----------c
Confidence 999999999999999999999999999999999999987643 3322211 122333 3444444321 1
Q ss_pred cceeeHHHHHhccccccccc---CCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEE
Q 007672 195 IKPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271 (594)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (594)
....++.+.+.......... ....++++++++|||||||.||+|+++|.+++..+......+ ++..++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 271 (580)
T 3etc_A 197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYT 271 (580)
T ss_dssp TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEE
T ss_pred cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEE
Confidence 23456666665443221111 245789999999999999999999999999988776654444 7888999999
Q ss_pred ecChhHHHHHHH-HHHhhhcCcEEEEec--C-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 007672 272 FLPLAHILDRVI-EEYFFRRGASVGYYH--G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (594)
Q Consensus 272 ~~pl~~~~~~~~-~l~~l~~G~~~~~~~--~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (594)
..|+.|..+.+. ++.++..|+++++.+ . ++..+++.|+++++|+++++|++++.|.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~------------------ 333 (580)
T 3etc_A 272 VADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE------------------ 333 (580)
T ss_dssp CCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS------------------
T ss_pred eCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc------------------
Confidence 999999888775 667889999998874 2 899999999999999999999999988642
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceecc
Q 007672 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427 (594)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 427 (594)
.....+++ +||.+++||+++++++.+++.+.+|+.+++.||+||++..++..
T Consensus 334 --------------------~~~~~~l~--------~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~ 385 (580)
T 3etc_A 334 --------------------DLSHYNFS--------TLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF 385 (580)
T ss_dssp --------------------CC---CCT--------TCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECC
T ss_pred --------------------ccccCCCc--------cceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecC
Confidence 01112233 89999999999999999999998899999999999998876665
Q ss_pred CCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEcc-----CCcccccCCCchhhhhcccCCccccCceEE
Q 007672 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIGQ 502 (594)
Q Consensus 428 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g-----~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~ 502 (594)
.... ...+++|+|+++++++|+| +++..+ +.|+.|||+|+| +.++.||+++++.+++.|.+|||+|||+|+
T Consensus 386 ~~~~-~~~~~~G~p~~~~~v~ivd-~~g~~~--~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~ 461 (580)
T 3etc_A 386 PWME-PKPGSIGKPTPGYKIELMD-RDGRLC--EVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAW 461 (580)
T ss_dssp TTSC-CCTTCCBEECTTCEEEEEC-TTSCBC--CTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEE
T ss_pred CCCC-CCCCccccCCCCCEEEEEC-CCCCCC--CCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEE
Confidence 4433 3448999999999999999 666544 456999999997 789999999999999999999999999999
Q ss_pred EcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc--------ee--
Q 007672 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG--------IL-- 566 (594)
Q Consensus 503 ~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~--------~~-- 566 (594)
+|+||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|+|++++ .++++...... +.
T Consensus 462 ~d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~ 540 (580)
T 3etc_A 462 MDEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDH 540 (580)
T ss_dssp ECTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred ECCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHH
Confidence 9999999999999999997 6999999999999999999999999998875 33333221111 11
Q ss_pred ---eeEeee------ecCceeeecccccccccccc
Q 007672 567 ---EWSCWF------IPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 567 ---~~~~~~------~p~~i~~~~~gk~~r~~~~~ 592 (594)
.++.|+ ..+.||+|++||++|+++|+
T Consensus 541 l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~ 575 (580)
T 3etc_A 541 VKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRD 575 (580)
T ss_dssp HHHHSCGGGCCSEEEEECC----------------
T ss_pred HHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHh
Confidence 113344 44578999999999999987
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-72 Score=600.72 Aligned_cols=474 Identities=23% Similarity=0.300 Sum_probs=386.4
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
....|+.++|+++++++||++|+++. +. .+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 85 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence 46789999999999999999999875 32 158999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+||+++|++++|++|.++.+++.+++++++++++|++......+..... .......++..... .
T Consensus 86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------~ 149 (517)
T 3r44_A 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRA-QADPPGTVTDWIGA---------------D 149 (517)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHH-SSSCCTTCCEEEEH---------------H
T ss_pred HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHh-ccCCccEEEEccCc---------------c
Confidence 9999999999999999999999999999999999999876655432211 11111111111110 1
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
.+.+..... ..........++++++++|||||||.||+|+++|+++.+.+......+ ++..+|++++.+|++|.
T Consensus 150 ~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 223 (517)
T 3r44_A 150 SLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV 223 (517)
T ss_dssp HHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred cHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence 233333322 122233445789999999999999999999999999999998887776 78899999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 007672 279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (594)
+++...+.++..|+++++.+. ++..+++.|+++++|++.++|+++..|.+......
T Consensus 224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 280 (517)
T 3r44_A 224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAE----------------------- 280 (517)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHH-----------------------
T ss_pred HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccccc-----------------------
Confidence 999876666669999998876 99999999999999999999999999876322111
Q ss_pred hccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC-ccccC
Q 007672 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG 436 (594)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-~~~~~ 436 (594)
.++ ++||.+++||+++++++.+.+... ++.+++.||+||+++.++...... ....+
T Consensus 281 --------------~~~--------~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 337 (517)
T 3r44_A 281 --------------LDA--------PDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAG 337 (517)
T ss_dssp --------------CCC--------TTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTT
T ss_pred --------------CCC--------CcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCC
Confidence 112 389999999999999999999887 999999999999998776654332 33458
Q ss_pred ccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccC
Q 007672 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 516 (594)
Q Consensus 437 ~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~ 516 (594)
++|+|.++++++|+| +++...+ .| .|||+|+|++++.||+++++.+++.|.+|||+|||+|++|+||+|++.||.|
T Consensus 338 ~~G~~~~~~~~~i~d-~~~~~~~--~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d 413 (517)
T 3r44_A 338 SAGRATMFTDVAVRG-DDGVIRE--HG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLK 413 (517)
T ss_dssp CCBEECTTEEEEEEC-TTSCEES--SE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGG
T ss_pred CCCcCCCCeEEEEEC-CCCCCCC--CC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCc
Confidence 999999999999999 6554443 34 7999999999999999999999999999999999999999999999999999
Q ss_pred ceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcc-cccccceee--------eEeeeec------C
Q 007672 517 NLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRR-RHQKVGILE--------WSCWFIP------G 575 (594)
Q Consensus 517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~-~~~~~~~~~--------~~~~~~p------~ 575 (594)
|+||+ +|++|+|.|||++|.+||+|.+|+|++++++ ++++. .....+..+ ++.|++| +
T Consensus 414 d~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~ 492 (517)
T 3r44_A 414 DMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAE 492 (517)
T ss_dssp GCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHHHSCGGGSCSEEEECS
T ss_pred CEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEEC
Confidence 99996 8999999999999999999999999998775 23332 222222222 2445554 4
Q ss_pred ceeeecccccccccccc
Q 007672 576 TLFTCSATKLYPLRAEE 592 (594)
Q Consensus 576 ~i~~~~~gk~~r~~~~~ 592 (594)
.||+|++||++|+++++
T Consensus 493 ~lP~t~~GKi~R~~L~~ 509 (517)
T 3r44_A 493 AIPRNPTGKILKTVLRE 509 (517)
T ss_dssp CCCBCTTCCBCHHHHHH
T ss_pred CCCCCCCcCccHHHHHH
Confidence 79999999999999886
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-71 Score=601.03 Aligned_cols=473 Identities=19% Similarity=0.188 Sum_probs=383.2
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..++.++|.++++++||++|+++. + +++||+||.++++++|+.|+++|+++||+|+|+++|+++++++++|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHH----HHhcccccccccccEEEEecCCcHHHHHHHhhCCcc
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (594)
|+++|++++|++|.++.+++.+++++++++++|+++.... .....+....+.++.++..++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 9999999999999999999999999999999999875321 11111111223444555444321
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChh
Q 007672 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (594)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 276 (594)
.|.++.... ..........++++++++|||||||.||+|+++|+++++.+......+ ++..+|++++.+|++
T Consensus 162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 111111111 111122345688999999999999999999999999999988877776 788999999999999
Q ss_pred HHHHHHH--HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007672 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (594)
Q Consensus 277 ~~~~~~~--~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (594)
|.+++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++......
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 294 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR------------------- 294 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence 9999874 6778999999999876 99999999999999999999999999876432111
Q ss_pred HHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCcc
Q 007672 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~ 433 (594)
.++ ++||.+++||+++++++.+.+.+.+|+.+++.||+||++............
T Consensus 295 ------------------~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 295 ------------------DDL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp ------------------CCC--------TTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred ------------------CCc--------cceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 112 289999999999999999999988899999999999965433322111122
Q ss_pred ccCccccCccCc-eEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEE
Q 007672 434 MVGTAGPVSVYS-ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (594)
Q Consensus 434 ~~~~~G~~~~~~-~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~ 511 (594)
..+++|+|+++. +++|+| +++.. ++.|+.|||+|+|++++.||+++++.+++.| .+|||+|||+|++|+||+|++
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 425 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHDRD--VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTSCB--CCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred cCCCCCcccCCCceEEEEC-CCCCC--CcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence 347899999765 799999 66554 4456999999999999999999999999999 799999999999999999999
Q ss_pred EeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc-ccccee--------e-eEeeeec-
Q 007672 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH-QKVGIL--------E-WSCWFIP- 574 (594)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~-~~~~~~--------~-~~~~~~p- 574 (594)
.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++.. ...+.. . ++.|++|
T Consensus 426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~~~~~P~ 504 (539)
T 1mdb_A 426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPD 504 (539)
T ss_dssp EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCCGGGSCS
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhCCCCcccCCC
Confidence 9999999996 8999999999999999999999999998764 3444332 111111 1 3444444
Q ss_pred -----Cceeeecccccccccccc
Q 007672 575 -----GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 575 -----~~i~~~~~gk~~r~~~~~ 592 (594)
+.||+|++||++|+++++
T Consensus 505 ~i~~v~~lP~t~~GKi~r~~L~~ 527 (539)
T 1mdb_A 505 RVEFVESFPQTGVGKVSKKALRE 527 (539)
T ss_dssp EEEECSSCCBCTTSCBCHHHHHH
T ss_pred EEEEeccCCCCCCcCEeHHHHHH
Confidence 568999999999999875
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-70 Score=591.74 Aligned_cols=497 Identities=24% Similarity=0.266 Sum_probs=392.8
Q ss_pred CccccccccCCCCCCCCCCcCcHHH-HHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCC
Q 007672 22 GPVYRNLLASNGFPSVDSDLNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100 (594)
Q Consensus 22 ~~~~r~~~~~~~~~~~~~~~~tl~~-~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~ 100 (594)
+.++++....... +...++.+ +|.++++++ |++|+++. ++ + +++||+||.++++++|+.|++.|+++
T Consensus 9 ~~~~~~~~~~~~~----p~~~~l~~~~l~~~~~~~-~~~A~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv~~ 76 (548)
T 2d1s_A 9 NIVVGPKPFYPIE----EGSAGTQLRKYMERYAKL-GAIAFTNA---VT--G--VDYSYAEYLEKSCCLGKALQNYGLVV 76 (548)
T ss_dssp TSEECCCCSSCCC----SSCHHHHHHHHHHHHHHH-TCEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHHTCCT
T ss_pred ceEecCCCCCCCC----CCcCcHHHHHHHhhhccc-CCceEEEc---CC--C--CEeeHHHHHHHHHHHHHHHHHcCCCC
Confidence 3566655422222 23468999 899999999 99999863 21 1 58999999999999999999999999
Q ss_pred CCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEec
Q 007672 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180 (594)
Q Consensus 101 gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~ 180 (594)
||+|+|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++......+.... ...+....++.++
T Consensus 77 gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~ 155 (548)
T 2d1s_A 77 DGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQ-KTVTTIKTIVILD 155 (548)
T ss_dssp TCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHH-HHSTTCCEEEETT
T ss_pred CCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHh-cCCCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999987665543221 1122234555554
Q ss_pred CCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCC------CCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhh
Q 007672 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254 (594)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~ 254 (594)
.... ......|+++.............. .++++++++|||||||.||+|++||+++.+.+.....
T Consensus 156 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~ 226 (548)
T 2d1s_A 156 SKVD---------YRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARD 226 (548)
T ss_dssp CSSC---------BTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTC
T ss_pred Cccc---------ccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhc
Confidence 3210 001234666655431110111111 2389999999999999999999999999988877655
Q ss_pred hhccccCCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHH
Q 007672 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK 332 (594)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~ 332 (594)
.+ ...++.++|++++.+|++|.+++.. ++.++ .|+++++.+. ++..+++.|+++++|+++++|+++..|.+..
T Consensus 227 ~~--~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-- 301 (548)
T 2d1s_A 227 PI--YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE-- 301 (548)
T ss_dssp TT--TSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS--
T ss_pred hh--hccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc--
Confidence 41 0126788999999999999999876 45566 9999999876 9999999999999999999999999886421
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCce
Q 007672 333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFL 411 (594)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i 411 (594)
..+..+++ +||.+++||+++++++.+.+.+.+ ++.+
T Consensus 302 -----------------------------------~~~~~~l~--------~lr~i~~gG~~l~~~~~~~~~~~~~~~~i 338 (548)
T 2d1s_A 302 -----------------------------------LLNKYDLS--------NLVEIASGGAPLSKEVGEAVARRFNLPGV 338 (548)
T ss_dssp -----------------------------------CGGGSCCT--------TCCEEEECSSCCCHHHHHHHHHHTTCSCC
T ss_pred -----------------------------------cccccccc--------ceeEEEEcCccCCHHHHHHHHHHcCCCce
Confidence 11112233 899999999999999999999988 6889
Q ss_pred EeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-
Q 007672 412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490 (594)
Q Consensus 412 ~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~- 490 (594)
++.||+||++.+++...... ...+++|+|+++++++|+|.+++. +++.|+.|||+|+|++++.||+++++.+.+.|
T Consensus 339 ~~~YG~TE~~~~~~~~~~~~-~~~~~~G~~~~~~~~~i~d~~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 415 (548)
T 2d1s_A 339 RQGYGLTETTSAIIITPEGD-DKPGASGKVVPLFKAKVIDLDTKK--SLGPNRRGEVCVKGPMLMKGYVNNPEATKELID 415 (548)
T ss_dssp EEEEECGGGSSEEEECCTTC-CCTTCCBEECTTCEEEEECTTTCC--BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred eeccccccccceeeecCccc-CCCCCCCccCCCceEEEEeCCcCc--cCCCCCCeEEEECCHHHhhhhcCChHHhhhccc
Confidence 99999999998776643332 344899999999999999943443 44566999999999999999999999999999
Q ss_pred cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--c
Q 007672 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--K 562 (594)
Q Consensus 491 ~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~ 562 (594)
.+|||+|||+|++|+||+|++.||.||+||+ +|++|+|.+||++|.+||+|.+|+|++++++ +++++... .
T Consensus 416 ~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~ 494 (548)
T 2d1s_A 416 EEGWLHTGDIGYYDEEKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN 494 (548)
T ss_dssp TTSCEEEEEEEEECTTCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred CCcEEEccCEEEEcCCCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCC
Confidence 7999999999999999999999999999996 8999999999999999999999999998874 34443221 1
Q ss_pred cceee--------eEe-------eeecCceeeecccccccccccc
Q 007672 563 VGILE--------WSC-------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 563 ~~~~~--------~~~-------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.+..+ +.. +...+.||+|++||++|+++++
T Consensus 495 ~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~ 539 (548)
T 2d1s_A 495 MTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIRE 539 (548)
T ss_dssp CCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHH
T ss_pred CCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHH
Confidence 22211 122 4445579999999999999875
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-70 Score=589.27 Aligned_cols=469 Identities=22% Similarity=0.262 Sum_probs=325.5
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
...|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|+++++++++
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4578999999999999999999875 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceee
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (594)
||+++|++++|++|.++.+++.+++++++++++|++......+.... ........++.+++... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCCc--------------C
Confidence 99999999999999999999999999999999999988766543332 23345566666654211 2
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHH
Q 007672 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (594)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 279 (594)
+.++...............++++++++|||||||.||+|+++|+++++.+......+ ++.++|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 222222111222333456789999999999999999999999999999998887776 789999999999999999
Q ss_pred HHHHHHHhhh-cCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007672 280 DRVIEEYFFR-RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (594)
Q Consensus 280 ~~~~~l~~l~-~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (594)
++...+.++. .|+++++...++..+++.|+++++|+++++|+++..|++..
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---------------------------- 266 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA---------------------------- 266 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc----------------------------
Confidence 9987666554 45555444449999999999999999999999999987532
Q ss_pred ccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCCccccCc
Q 007672 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437 (594)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~ 437 (594)
...++ +++|.++.+|++ ++.+.+.+.+ ++.+++.||+||++++++........ ..
T Consensus 267 -----------~~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~--~~ 322 (509)
T 3ivr_A 267 -----------APAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRP--KS 322 (509)
T ss_dssp -----------CGGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGST--TS
T ss_pred -----------cccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccCC--Cc
Confidence 00112 289999999987 7788888877 99999999999999877765443322 45
Q ss_pred cccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEecc--
Q 007672 438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK-- 515 (594)
Q Consensus 438 ~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~-- 515 (594)
+|+|+++++++|+| +++.. ++.|+.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||+|++.||.
T Consensus 323 ~G~p~~~~~~~i~d-~~~~~--~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~ 399 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AEDRP--LPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399 (509)
T ss_dssp CCEECTTCEEEEEC-TTSCB--CCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--
T ss_pred ccccCCCcEEEEEC-CCCCC--CCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCc
Confidence 99999999999999 66554 45569999999999999999999999999999999999999999999999999999
Q ss_pred CceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccc--ccccceee--------eEeeeec-----
Q 007672 516 KNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRR--HQKVGILE--------WSCWFIP----- 574 (594)
Q Consensus 516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~--~~~~~~~~--------~~~~~~p----- 574 (594)
+|+||+ +|++|+|.+||++|.+||+|.+|+|++++++ +++++. +...+..+ ++.|++|
T Consensus 400 ~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~ 478 (509)
T 3ivr_A 400 KELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVF 478 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEE
Confidence 999996 8999999999999999999999999998875 333332 22222222 2335554
Q ss_pred -CceeeeccccccccccccC
Q 007672 575 -GTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 575 -~~i~~~~~gk~~r~~~~~~ 593 (594)
+.||+|++||++|+++|+-
T Consensus 479 v~~lP~t~~GKidr~~Lr~~ 498 (509)
T 3ivr_A 479 VEALPKDAKGAIDRAAVKTA 498 (509)
T ss_dssp --------------------
T ss_pred ecCCCCCCCCCccHHHHHHH
Confidence 5689999999999999873
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-70 Score=585.91 Aligned_cols=466 Identities=20% Similarity=0.242 Sum_probs=373.9
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
|+|+.++|+++++++||++|+++. +.. +++||+||.++++++|+.|+++|+++||+|+|+++|+++++++++|
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 578999999999999999999864 321 7899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEE--cchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
|+++|++++|++|.++.+++.+++++++++++|+ +......+.... ...+ ++.
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~~-------------------- 128 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-IIF-------------------- 128 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EEE--------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eEE--------------------
Confidence 9999999999999999999999999999999999 665443331111 1111 221
Q ss_pred eHHHHHhccc----ccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCC--CCCcEEEEe
Q 007672 199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272 (594)
Q Consensus 199 ~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 272 (594)
++++..... ..........++++++++|||||||.||+|+++|+++.+.+......+ ++ ..++++++.
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 129 -LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp -GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred -ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 222211110 011111345678999999999999999999999999999888776655 56 788999999
Q ss_pred cChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 007672 273 LPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (594)
Q Consensus 273 ~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (594)
+|++|.+++.. .+.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+.....
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------- 265 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA----------------- 265 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCT-----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccc-----------------
Confidence 99999999854 7778999999999876 9999999999999999999999999987532100
Q ss_pred HHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCC
Q 007672 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430 (594)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~ 430 (594)
....++ ++||.+++||+++++++.+.+.+.+++.+++.||+||++ ++....
T Consensus 266 ------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~-- 316 (504)
T 1t5h_X 266 ------------------GSSLKL--------DSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR-- 316 (504)
T ss_dssp ------------------TCCCCC--------TTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--
T ss_pred ------------------cccccC--------ccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--
Confidence 000112 289999999999999999999999999999999999993 332222
Q ss_pred CccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEc-cCCcccccCCCchhhhhcccCCccccCceEEEcCCCcE
Q 007672 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509 (594)
Q Consensus 431 ~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~-g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l 509 (594)
....+++|.|.++++++|+|.+++...+++.|+.|||+|+ |++++.||+++++.+.+.|.+|||+|||+|++|+||+|
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l 395 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTV 395 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCE
T ss_pred -CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceE
Confidence 1233789999999999999933322345666799999999 99999999999999999999999999999999999999
Q ss_pred EEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--ccce--------e-eeEeee
Q 007672 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--KVGI--------L-EWSCWF 572 (594)
Q Consensus 510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~~~~--------~-~~~~~~ 572 (594)
++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++... ..+. . .++.|+
T Consensus 396 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~ 474 (504)
T 1t5h_X 396 RILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFK 474 (504)
T ss_dssp EEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGG
T ss_pred EEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcccc
Confidence 999999999996 8999999999999999999999999998774 34444321 1111 1 244444
Q ss_pred ec------Cceeeecccccccccccc
Q 007672 573 IP------GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 573 ~p------~~i~~~~~gk~~r~~~~~ 592 (594)
+| +.||+|++||++|+++++
T Consensus 475 ~P~~i~~v~~lP~t~~GKi~r~~L~~ 500 (504)
T 1t5h_X 475 RPKRYFILDQLPKNALNKVLRRQLVQ 500 (504)
T ss_dssp SCSEEEECSCCCBCTTSCBCHHHHHH
T ss_pred cceEEEEhhhCCCCCCCCEeHHHHHH
Confidence 44 568999999999999875
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-70 Score=589.63 Aligned_cols=468 Identities=22% Similarity=0.293 Sum_probs=376.5
Q ss_pred HHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcC
Q 007672 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS 125 (594)
Q Consensus 46 ~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G 125 (594)
++|.++++++|+++|+.+. +.. + +++||+||.++++++|+.|+++|+++||+|+|+++|+++++++++||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~~~-~--~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---TAA-G--DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---ETT-C--CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---cCC-C--cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 5788999999999999864 211 1 589999999999999999999999999999999999999999999999999
Q ss_pred CEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHh
Q 007672 126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205 (594)
Q Consensus 126 ~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (594)
++++|++|.++.+++.+++++++++++|++......+....... . ..+..++.... ..+.....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999987654332211110 1 13333332211 01111111
Q ss_pred cccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHH-H
Q 007672 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E 284 (594)
Q Consensus 206 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~ 284 (594)
.. ..........++++++++|||||||.||+|+++|+++.+.+......+ ++.++|++++.+|++|.+++.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 112223345789999999999999999999999999999998887776 7899999999999999999765 6
Q ss_pred HHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCC
Q 007672 285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 363 (594)
Q Consensus 285 l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (594)
+.++..|+++++.+. ++..+++.++ ++|+++++|+++..+++...
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 678899999998876 9999999998 89999999999998864211
Q ss_pred CcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCcc
Q 007672 364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443 (594)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~ 443 (594)
....++ +++|.+++||+++++++.+.+.+.+++.+++.||+||++..+.... ......+++|+|++
T Consensus 262 -----~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----LTKETT--------GHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP 327 (503)
T ss_dssp -----CSTTTT--------TTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred -----ccccch--------hhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence 111112 3899999999999999999999989999999999999987754333 23334488999999
Q ss_pred CceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEEEeccCceeEcC
Q 007672 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522 (594)
Q Consensus 444 ~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~ 522 (594)
+++++|+|.+++. +++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||+|++.||.||+||+
T Consensus 328 ~~~~~i~d~~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 404 (503)
T 4fuq_A 328 GVSARVTDPETGK--ELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT- 404 (503)
T ss_dssp TCEEEEECTTTCC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred CeEEEEEECCCCC--CCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence 9999999944444 44566999999999999999999999999999 6999999999999999999999999999997
Q ss_pred CceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--cccee--------eeEeeeec------Cceeee
Q 007672 523 QGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--KVGIL--------EWSCWFIP------GTLFTC 580 (594)
Q Consensus 523 ~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~~~~~--------~~~~~~~p------~~i~~~ 580 (594)
+|++|+|.|||++|.+||+|.+|+|++++++ +++++... ..+.. .++.|++| +.||+|
T Consensus 405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t 484 (503)
T 4fuq_A 405 GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRN 484 (503)
T ss_dssp TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBC
T ss_pred CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCC
Confidence 7999999999999999999999999998774 33333221 12211 22444444 568999
Q ss_pred cccccccccccc
Q 007672 581 SATKLYPLRAEE 592 (594)
Q Consensus 581 ~~gk~~r~~~~~ 592 (594)
++||++|+++++
T Consensus 485 ~~GKi~R~~L~~ 496 (503)
T 4fuq_A 485 TMGKVQKNVLRE 496 (503)
T ss_dssp TTSCBCHHHHHH
T ss_pred cccceeHHHHHH
Confidence 999999999876
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-70 Score=593.95 Aligned_cols=459 Identities=20% Similarity=0.194 Sum_probs=316.3
Q ss_pred CCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 007672 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (594)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~ 117 (594)
.+...++.++|+++++++||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|+++++++
T Consensus 71 ~~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~ 141 (570)
T 4gr5_A 71 APAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVA 141 (570)
T ss_dssp CCCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHH
Confidence 345689999999999999999999875 3 5899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcce
Q 007672 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (594)
Q Consensus 118 ~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 197 (594)
++||+++|++++|++|.++.+++.+++++++++++|++......+ .....+.. .+...
T Consensus 142 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~-~~~~~------------- 199 (570)
T 4gr5_A 142 LLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYV-EDEAA------------- 199 (570)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEEC-CC----------------
T ss_pred HHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceee-ecccc-------------
Confidence 999999999999999999999999999999999999997654332 11112211 11100
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhH
Q 007672 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (594)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 277 (594)
.............++++++++|||||||.||+|+++|+++.+.+... ..+ ++.+++++++.+|++|
T Consensus 200 --------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 200 --------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTS
T ss_pred --------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccH
Confidence 00011112234578999999999999999999999999998776652 222 6788999999999998
Q ss_pred HHHHHHHHHhhhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 278 ILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 278 ~~~~~~~l~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
..+...++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|.+....
T Consensus 266 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------------------- 323 (570)
T 4gr5_A 266 DAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE---------------------- 323 (570)
T ss_dssp STHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG----------------------
T ss_pred HHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh----------------------
Confidence 7776677889999999999763 899999999999999999999999998653110
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC--
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-- 431 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~-- 431 (594)
++ ++||.+++||+++++++.+.+.+.+ ++.+++.||+||++++++......
T Consensus 324 ------------------~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~ 377 (570)
T 4gr5_A 324 ------------------AF--------EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGD 377 (570)
T ss_dssp ------------------GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGG
T ss_pred ------------------hC--------CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccc
Confidence 11 2899999999999999988888776 899999999999988766543322
Q ss_pred -ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cC--------CccccCceE
Q 007672 432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIG 501 (594)
Q Consensus 432 -~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~--------g~~~TGDlg 501 (594)
.....++|+|+++++++|+| +++.. ++.|+.|||+|+|++++.||+++++.+++.| .+ |||+|||+|
T Consensus 378 ~~~~~~~iG~p~~~~~v~i~d-~~~~~--~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg 454 (570)
T 4gr5_A 378 LSGTALPIGVPLAGKRAYVLD-DDLKP--AANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLA 454 (570)
T ss_dssp TTSSSCCCBEECTTEEEEEEC-TTSCB--CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEE
T ss_pred cCCCccccceeeCCCEEEEEC-CCCCC--CCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeE
Confidence 12235799999999999999 66554 4456999999999999999999999999998 43 699999999
Q ss_pred EEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc---cccceeee----
Q 007672 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH---QKVGILEW---- 568 (594)
Q Consensus 502 ~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~---~~~~~~~~---- 568 (594)
++|+||+|++.||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +++++.. ...+..++
T Consensus 455 ~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l 533 (570)
T 4gr5_A 455 RRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHV 533 (570)
T ss_dssp EECTTSCEEEEEC-------------------------------------------------------------------
T ss_pred EECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHH
Confidence 99999999999999999997 8999999999999999999999999998764 3443321 11222222
Q ss_pred ----Eeeee------cCceeeeccccccccccccC
Q 007672 569 ----SCWFI------PGTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 569 ----~~~~~------p~~i~~~~~gk~~r~~~~~~ 593 (594)
+.|++ .+.||+|++||++|+++++.
T Consensus 534 ~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 534 AEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------
T ss_pred HhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 33444 45799999999999999874
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-69 Score=586.38 Aligned_cols=481 Identities=19% Similarity=0.205 Sum_probs=390.3
Q ss_pred CCCcCcHHHHHHHHHHc-----CCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCc
Q 007672 38 DSDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANC 111 (594)
Q Consensus 38 ~~~~~tl~~~l~~~a~~-----~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gi~~gd~V~i~~~n~ 111 (594)
+...+++.++|++++++ +||++|+++. +. .|..+++||+||.++++++|++|++. |+++||+|+|+++|+
T Consensus 34 ~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~ 109 (570)
T 3c5e_A 34 PAKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRV 109 (570)
T ss_dssp CSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSC
T ss_pred CccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCC
Confidence 34567788999999999 9999999976 42 23347899999999999999999999 999999999999999
Q ss_pred hhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHh
Q 007672 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (594)
Q Consensus 112 ~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 191 (594)
++++++++||+++|++++|+++.++.+++.+++++++++++|++......+.... ...+.++.++.+++...
T Consensus 110 ~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 181 (570)
T 3c5e_A 110 PEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIKLLVSEKSC------- 181 (570)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEEEEESSSCC-------
T ss_pred HHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEEEEecccCc-------
Confidence 9999999999999999999999999999999999999999999987665543322 22344556666554211
Q ss_pred hCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHH--HHhhhhhhhccccCCCCCCcEE
Q 007672 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVY 269 (594)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~--~~~~~~~~~~~~~~~~~~~~~~ 269 (594)
.....+++++..... ........++++++++|||||||.||+|+++|+ ++. ..... ..+ ++..+|++
T Consensus 182 ---~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~ 250 (570)
T 3c5e_A 182 ---DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIM 250 (570)
T ss_dssp ---TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEE
T ss_pred ---cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceE
Confidence 123456666654322 122234568999999999999999999999999 544 33332 333 67899999
Q ss_pred EEecChhHHHHHHH-HHHhhhcCcEEEEec---CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 007672 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345 (594)
Q Consensus 270 ~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (594)
++.+|++|.+++.. ++.++..|+++++.. .++..+++.|+++++|+++++|++++.|.+..
T Consensus 251 ~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------- 315 (570)
T 3c5e_A 251 WTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD--------------- 315 (570)
T ss_dssp EECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---------------
T ss_pred EEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---------------
Confidence 99999999999874 677899999999885 28999999999999999999999999886420
Q ss_pred HHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCcee
Q 007672 346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 425 (594)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~ 425 (594)
....++ ++||.+++||+++++++.+.+.+.+|+.+++.||+||++.+++
T Consensus 316 -----------------------~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~ 364 (570)
T 3c5e_A 316 -----------------------LSSYKF--------PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCM 364 (570)
T ss_dssp -----------------------TTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEE
T ss_pred -----------------------cccccc--------ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhccccee
Confidence 001112 2899999999999999999999888999999999999987665
Q ss_pred ccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEc-----cCCcccccCCCchhhhhcccCCccccCce
Q 007672 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTGDI 500 (594)
Q Consensus 426 ~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~-----g~~v~~gY~~~~~~~~~~~~~g~~~TGDl 500 (594)
..... ....+++|+|+++++++|+| +++.. ++.|+.|||+|+ |++++.||+++++.+.+.|.+|||+|||+
T Consensus 365 ~~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~~--~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDl 440 (570)
T 3c5e_A 365 VSKTM-KIKPGYMGTAASCYDVQIID-DKGNV--LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDR 440 (570)
T ss_dssp CCTTS-CCCTTCCCEECTTCCEEEEC-TTSCB--CCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEE
T ss_pred cCccc-ccCCCcccccCCCceEEEEC-CCCCC--CCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCcccccee
Confidence 54332 23348999999999999999 66654 445699999999 99999999999999999999999999999
Q ss_pred EEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccccc-------cee-
Q 007672 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKV-------GIL- 566 (594)
Q Consensus 501 g~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~-------~~~- 566 (594)
|++|+||+|++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +++++..... ...
T Consensus 441 g~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~ 519 (570)
T 3c5e_A 441 GIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKE 519 (570)
T ss_dssp EEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHH
T ss_pred EEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHH
Confidence 999999999999999999996 8999999999999999999999999998764 3444322111 011
Q ss_pred -------eeEeee------ecCceeeecccccccccccc
Q 007672 567 -------EWSCWF------IPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 567 -------~~~~~~------~p~~i~~~~~gk~~r~~~~~ 592 (594)
.++.|+ ..+.||+|++||++|+++++
T Consensus 520 l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~ 558 (570)
T 3c5e_A 520 LQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRD 558 (570)
T ss_dssp HHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHH
T ss_pred HHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHH
Confidence 123344 44568999999999999875
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-69 Score=598.06 Aligned_cols=493 Identities=16% Similarity=0.180 Sum_probs=393.4
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
..+++.++|+++++++||++|+++. +...+..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|
T Consensus 74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l 150 (652)
T 1pg4_A 74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML 150 (652)
T ss_dssp EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3578899999999999999999986 4444556899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHH---------HHhcccccc-cccccEEEEecCCcHHHHHH
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEM 189 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~ 189 (594)
||+++|++++|+++.++.+++.+++++++++++|+++.... .+....... ...++.+++++......
T Consensus 151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~--- 227 (652)
T 1pg4_A 151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI--- 227 (652)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC---
T ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc---
Confidence 99999999999999999999999999999999999875421 111111110 01345666665321100
Q ss_pred HhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHh-hhhhhhccccCCCCCCcE
Q 007672 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS-GVDLFLDQFEDKMTVDDV 268 (594)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~-~~~~~~~~~~~~~~~~~~ 268 (594)
.........|++++..... ........++++++++|||||||.||||+++|++++..+. .....+ ++.++|+
T Consensus 228 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~ 300 (652)
T 1pg4_A 228 -DWQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDI 300 (652)
T ss_dssp -CCCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCE
T ss_pred -cccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCE
Confidence 0000123567777754321 1223345689999999999999999999999999887664 333344 7889999
Q ss_pred EEEecChhHHHHHH-HHHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 007672 269 YLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (594)
Q Consensus 269 ~~~~~pl~~~~~~~-~~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~ 342 (594)
+++..|++|..++. .++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+....
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------- 370 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK---------- 370 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG----------
T ss_pred EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc----------
Confidence 99999999999985 47789999999999863 789999999999999999999999988642110
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC---CceEeeecccC
Q 007672 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE 419 (594)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~yG~tE 419 (594)
..+..+++ +||.+++||+++++++.+++.+.+| +.+++.||+||
T Consensus 371 -------------------------~~~~~~l~--------sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 417 (652)
T 1pg4_A 371 -------------------------AIEGTDRS--------SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417 (652)
T ss_dssp -------------------------GTTTCCCT--------TCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGG
T ss_pred -------------------------ccccCCcC--------ceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcc
Confidence 01112233 8999999999999999999998887 89999999999
Q ss_pred CCCceeccCCC-CccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cCC
Q 007672 420 TCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG 493 (594)
Q Consensus 420 ~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~~g 493 (594)
+++.++...+. .....+++|+|++|++++|+| +++..+ +.|+.|||+|+| |+++.|||++++.+.+.| .+|
T Consensus 418 ~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v--~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g 494 (652)
T 1pg4_A 418 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQ--EGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN 494 (652)
T ss_dssp GSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBC--CSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT
T ss_pred cccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCc--CCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC
Confidence 99876665443 233458999999999999999 666544 455899999999 799999999999888776 389
Q ss_pred ccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccce--
Q 007672 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGI-- 565 (594)
Q Consensus 494 ~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~-- 565 (594)
||+|||+|++|+||+|+++||.||+||+ +|++|+|.|||++|.+||+|.||+|+|++++ +++++.+.....
T Consensus 495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~ 573 (652)
T 1pg4_A 495 MYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP 573 (652)
T ss_dssp SEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH
T ss_pred EEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCH
Confidence 9999999999999999999999999997 7999999999999999999999999998764 444443321111
Q ss_pred ---ee--------eEe------eeecCceeeecccccccccccc
Q 007672 566 ---LE--------WSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 566 ---~~--------~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.+ +.. +.....||+|++||++|+.+++
T Consensus 574 ~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 617 (652)
T 1pg4_A 574 ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 617 (652)
T ss_dssp HHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHH
Confidence 11 123 4445569999999999999875
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-69 Score=585.53 Aligned_cols=458 Identities=20% Similarity=0.257 Sum_probs=373.5
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
+...++.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34578999999999999999999864 3 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+||+++|++++|+++.++.+++.+++++++++++|++......+.... ....+..++....
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------------- 167 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDTI-------------- 167 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCSTT--------------
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchhh--------------
Confidence 999999999999999999999999999999999999987654432211 1112222222100
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
... .......+..++++++++|||||||.||||++||+++.+.+......+ ++.++|++++.+|++|.
T Consensus 168 ------~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 235 (563)
T 1amu_A 168 ------KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFD 235 (563)
T ss_dssp ------TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTST
T ss_pred ------ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHH
Confidence 000 011112334678999999999999999999999999998888776665 78899999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
.++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+...
T Consensus 236 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------- 290 (563)
T 1amu_A 236 ASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------- 290 (563)
T ss_dssp HHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------
T ss_pred HHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------
Confidence 988777889999999998764 889999999999999999999998776320
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC--c
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--M 432 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~--~ 432 (594)
.+ +++|.+++||+++++++.+.+.+ .+.+++.||+||++.+++...... .
T Consensus 291 ------------------~~--------~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~ 342 (563)
T 1amu_A 291 ------------------RI--------LSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETI 342 (563)
T ss_dssp ------------------TC--------CSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCC
T ss_pred ------------------cc--------ccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccC
Confidence 01 28999999999999999999876 478999999999998766543322 2
Q ss_pred cccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------CCccccCceEEEcC
Q 007672 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILP 505 (594)
Q Consensus 433 ~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~-------~g~~~TGDlg~~~~ 505 (594)
....++|+|+++++++|+| +++..+ +.|+.|||+|+|++++.||+++++.+++.|. ++||+|||+|++|+
T Consensus 343 ~~~~~vG~p~~~~~v~i~d-~~~~~~--~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~ 419 (563)
T 1amu_A 343 GHSVPIGAPIQNTQIYIVD-ENLQLK--SVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS 419 (563)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSCBC--CTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT
T ss_pred CCCCcccceeCCCEEEEEC-CCcCCC--CCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC
Confidence 2346899999999999999 666544 4568999999999999999999999999983 24999999999999
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccceeee--------Eee
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGILEW--------SCW 571 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~~~~--------~~~ 571 (594)
||+|++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +++++.....+..++ +.|
T Consensus 420 dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~L~~y 498 (563)
T 1amu_A 420 DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTY 498 (563)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHHSCGG
T ss_pred CCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCCCHHHHHHHHHhhCchh
Confidence 9999999999999997 8999999999999999999999999998763 444444333322222 334
Q ss_pred ee------cCceeeeccccccccccccC
Q 007672 572 FI------PGTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 572 ~~------p~~i~~~~~gk~~r~~~~~~ 593 (594)
++ .+.||+|++||++|+++++.
T Consensus 499 ~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 526 (563)
T 1amu_A 499 MIPSYFIQLDKMPLTSNGKIDRKQLPEP 526 (563)
T ss_dssp GSCSEEEECSSCCBCTTSSBCGGGSCCC
T ss_pred hCCcEEEEecccCCCCCcChhHHhcCCc
Confidence 44 45799999999999999874
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-69 Score=582.04 Aligned_cols=480 Identities=19% Similarity=0.210 Sum_probs=374.8
Q ss_pred CCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 007672 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (594)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~ 117 (594)
|..++++.++|+++++ +||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|+++++++
T Consensus 20 p~~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~ 89 (529)
T 2v7b_A 20 PALFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVA 89 (529)
T ss_dssp --CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHH
T ss_pred ccceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHH
Confidence 4566779999999999 9999999864 3 4799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccc-cEEEEecCCcHHHHHHHhhCCcc
Q 007672 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGIK 196 (594)
Q Consensus 118 ~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~ 196 (594)
++||+++|++++|+++.++.+++.+++++++++++|++......+..... ..... ..++..+.... ....
T Consensus 90 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~ 160 (529)
T 2v7b_A 90 FLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRES--------EPRL 160 (529)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------C
T ss_pred HHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEeccccc--------cccc
Confidence 99999999999999999999999999999999999999876654432211 11222 34444433211 0011
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhH-HHHHhhhhhhhccccCCCCCCcEEEEecCh
Q 007672 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (594)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 275 (594)
...|+++...... ........++++++++|||||||.||+|+++|+++ .+........+ ++.++|++++.+|+
T Consensus 161 ~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~ 234 (529)
T 2v7b_A 161 APLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKL 234 (529)
T ss_dssp CCBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCT
T ss_pred ccchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecH
Confidence 2246666543211 12223457899999999999999999999999999 56655544444 67889999999999
Q ss_pred hHHHHHHH-HHHhhhcCcEEEEec-C-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007672 276 AHILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (594)
Q Consensus 276 ~~~~~~~~-~l~~l~~G~~~~~~~-~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (594)
+|.+++.. .+.++..|+++++.+ . ++..+++.|+++++|+++++|+++..+++...
T Consensus 235 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------- 293 (529)
T 2v7b_A 235 FFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN--------------------- 293 (529)
T ss_dssp TSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT---------------------
T ss_pred HHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc---------------------
Confidence 99999875 567899999999873 3 89999999999999999999999988764210
Q ss_pred HHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCc
Q 007672 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~ 432 (594)
.... ...++|.+++||+++++++.+.+.+.+|+.+++.||+||++.+........
T Consensus 294 ----------------~~~~--------~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~- 348 (529)
T 2v7b_A 294 ----------------LPAR--------ADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA- 348 (529)
T ss_dssp ----------------CCCG--------GGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-
T ss_pred ----------------cccc--------cCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-
Confidence 0000 002799999999999999999999988999999999999987666554443
Q ss_pred cccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEE
Q 007672 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKII 512 (594)
Q Consensus 433 ~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~ 512 (594)
...+++|.|+++++++|+| +++..+ +.|+.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||+|++.
T Consensus 349 ~~~~~~G~p~~~~~~~i~d-~~g~~~--~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~ 425 (529)
T 2v7b_A 349 VEYGTTGRPVPGYEIELRD-EAGHAV--PDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYA 425 (529)
T ss_dssp CCTTSCCEECTTCEEEEEC-TTSCBC--CTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEE
T ss_pred CccCCcccCCCCCEEEEEC-CCCCCC--CCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEe
Confidence 3348999999999999999 666544 4569999999999999999999999999999999999999999999999999
Q ss_pred eccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCC-----chhhccccccc--------cee-----eeEe----
Q 007672 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCS-----SCAMRRRHQKV--------GIL-----EWSC---- 570 (594)
Q Consensus 513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~-----~~~~~~~~~~~--------~~~-----~~~~---- 570 (594)
||.||+||+ +|++|+|.+||++|.+||+|.+|+|+++.. .+++++..... .+. .++.
T Consensus 426 GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P 504 (529)
T 2v7b_A 426 GRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYP 504 (529)
T ss_dssp EEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSC
T ss_pred CccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCC
Confidence 999999997 899999999999999999999999999822 13333322111 011 1222
Q ss_pred --eeecCceeeecccccccccccc
Q 007672 571 --WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 571 --~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+...+.||+|++||++|+++++
T Consensus 505 ~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 505 RDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp SEEEEESCCCBCTTSCBCHHHHHC
T ss_pred eEEEEeccCCCCCccchhHHhHhh
Confidence 4445679999999999999986
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-69 Score=593.13 Aligned_cols=476 Identities=18% Similarity=0.195 Sum_probs=389.1
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
...++.++|.++++ ||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|+++++++++
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 35789999999988 999999865 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHH----HHhcccccccccccEEEEecCCcHHHHHHHhhCCc
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 195 (594)
||+++|++++|+++..+.+++.++++++++++++++..... .............+.+...++...
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 99999999999999999999999999999999999876531 111111112234455555444321
Q ss_pred ceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecCh
Q 007672 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (594)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 275 (594)
..+.+..... .......+..++++++++|||||||.||+|+++|+++.+.+......+ ++.+++++++++|+
T Consensus 163 --~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~ 234 (617)
T 3rg2_A 163 --HNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPA 234 (617)
T ss_dssp --TBHHHHHHSC-CSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCT
T ss_pred --cchhhhhccc-ccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccc
Confidence 1233333322 112223445689999999999999999999999999999999888777 78999999999999
Q ss_pred hHHHHHHH--HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007672 276 AHILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (594)
Q Consensus 276 ~~~~~~~~--~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (594)
+|.+++.. .+.++..|+++++.+. ++..+++.|+++++|++.++|+++..+.+........
T Consensus 235 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~---------------- 298 (617)
T 3rg2_A 235 AHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR---------------- 298 (617)
T ss_dssp TSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT----------------
T ss_pred hhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc----------------
Confidence 99999874 6778999999999876 8999999999999999999999999987643221100
Q ss_pred HHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCc
Q 007672 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~ 432 (594)
.++ ++||.+++||+++++++.+.+.+.+++.+++.||+||++..++.......
T Consensus 299 -------------------~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 351 (617)
T 3rg2_A 299 -------------------AQL--------ASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAE 351 (617)
T ss_dssp -------------------TTT--------TTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHH
T ss_pred -------------------ccC--------CCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccc
Confidence 011 28999999999999999999999889999999999999865554433333
Q ss_pred cccCccccCc-cCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEE
Q 007672 433 CMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK 510 (594)
Q Consensus 433 ~~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~ 510 (594)
....++|.|+ ++.+++|+| +++..+ +.|+.|||+|+|+++++||+++++.+++.| .+|||+|||+|++++||+|+
T Consensus 352 ~~~~~~G~p~~~~~~~~i~d-~~~~~~--p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~ 428 (617)
T 3rg2_A 352 KIIHTQGYPMCPDDEVWVAD-AEGNPL--PQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYIT 428 (617)
T ss_dssp HHHHCCCEESCTTCEEEEEC-TTSCBC--CTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred ccccCCCccCCCCceEEEEC-CCCCCC--CCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEE
Confidence 3336789987 788999999 666544 456999999999999999999999999999 89999999999999999999
Q ss_pred EEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccccccee---------eeEeeeecC
Q 007672 511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGIL---------EWSCWFIPG 575 (594)
Q Consensus 511 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~~---------~~~~~~~p~ 575 (594)
++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +++++........ .++.|++|+
T Consensus 429 ~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~~lp~~~vP~ 507 (617)
T 3rg2_A 429 VQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPD 507 (617)
T ss_dssp EEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHTTTCCGGGSCS
T ss_pred EEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCCHHHHHHHHHhCCCccccCCc
Confidence 99999999997 7999999999999999999999999987664 3444333222211 245566654
Q ss_pred ------ceeeecccccccccccc
Q 007672 576 ------TLFTCSATKLYPLRAEE 592 (594)
Q Consensus 576 ------~i~~~~~gk~~r~~~~~ 592 (594)
.||+|++||+.|+++++
T Consensus 508 ~~~~v~~lP~t~~GKidR~~L~~ 530 (617)
T 3rg2_A 508 RVECVDSLPLTAVGKVDKKQLRQ 530 (617)
T ss_dssp EEEECSCCCBCTTSSBCHHHHHH
T ss_pred EEEEecccCCCCCCCCcHHHHHH
Confidence 69999999999999875
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-69 Score=594.72 Aligned_cols=495 Identities=17% Similarity=0.199 Sum_probs=392.5
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~-~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
..+++.++|+++++++||++|+++. +...+..+++||+||.++++++|+.|+ ++|+++||+|+|+++|++++++++
T Consensus 80 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~ 156 (663)
T 1ry2_A 80 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL 156 (663)
T ss_dssp EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred CccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Confidence 4578999999999999999999986 444455689999999999999999999 999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHH--------HHhcccccccccccEEEEecCCcHHHHHHH
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK--------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 190 (594)
+||+++|++++|+++.++.+++.+++++++++++|+++.... .........++.++.+++++...... .
T Consensus 157 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---~ 233 (663)
T 1ry2_A 157 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---V 233 (663)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---C
T ss_pred HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc---c
Confidence 999999999999999999999999999999999999876421 11111112224456677665421100 0
Q ss_pred hhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhh-hhhhhccccCCCCCCcEE
Q 007672 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY 269 (594)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 269 (594)
........+|+++..... .........++++++++|||||||.||||+++|.+++..+.. ....+ ++.++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~ 307 (663)
T 1ry2_A 234 AFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVF 307 (663)
T ss_dssp CCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEE
T ss_pred ccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEE
Confidence 000112356777765432 122334456899999999999999999999999998876543 33334 78899999
Q ss_pred EEecChhHHHHHH-HHHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 007672 270 LSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (594)
Q Consensus 270 ~~~~pl~~~~~~~-~~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (594)
++..|++|..++. .++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+...
T Consensus 308 ~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------ 375 (663)
T 1ry2_A 308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD------------ 375 (663)
T ss_dssp EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT------------
T ss_pred EEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc------------
Confidence 9999999999985 47789999999999863 78999999999999999999999998753210
Q ss_pred HHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC---CceEeeecccCC
Q 007672 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET 420 (594)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~yG~tE~ 420 (594)
...+..+++ +||.+++||+++++++.+++.+.+| +.+++.||+||+
T Consensus 376 -----------------------~~~~~~~l~--------sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 424 (663)
T 1ry2_A 376 -----------------------SYIENHSLK--------SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES 424 (663)
T ss_dssp -----------------------TSSSSCCCT--------TCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTT
T ss_pred -----------------------cccccCCcC--------ceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccc
Confidence 001112333 8999999999999999999999887 899999999999
Q ss_pred CCceeccCC--CCccccCccccCccCceEEeeecC-CCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cC
Q 007672 421 CGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---ID 492 (594)
Q Consensus 421 ~~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~d~~-~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~~ 492 (594)
++.+....+ ......+++|.|++|++++|+| + ++..++. .|+.|||+++| |+++.|||++++.+.+.| .+
T Consensus 425 ~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~ 502 (663)
T 1ry2_A 425 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP 502 (663)
T ss_dssp CSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSST
T ss_pred cCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCC
Confidence 987666543 2233458999999999999999 5 5544332 16899999999 589999999999988877 38
Q ss_pred CccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc--
Q 007672 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG-- 564 (594)
Q Consensus 493 g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~-- 564 (594)
|||+|||+|++|+||+|++.||.||+||+ +|++|+|.|||++|.+||+|.||+|+|++++ +++++.+....
T Consensus 503 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~ 581 (663)
T 1ry2_A 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWS 581 (663)
T ss_dssp TSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------
T ss_pred CEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccc
Confidence 99999999999999999999999999997 7999999999999999999999999998874 44444322111
Q ss_pred -e---------ee--------eEe------eeecCceeeecccccccccccc
Q 007672 565 -I---------LE--------WSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 565 -~---------~~--------~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
. .+ +.. +.....||+|++||++|+.+|+
T Consensus 582 ~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 633 (663)
T 1ry2_A 582 TATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRK 633 (663)
T ss_dssp ------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHH
Confidence 0 11 122 4445579999999999999876
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-68 Score=586.14 Aligned_cols=455 Identities=18% Similarity=0.156 Sum_probs=366.4
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
...++.++|.++++++||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|+++++++++
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l 95 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4578999999999999999999875 4 589999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceee
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (594)
||+++|++++|++|.++.+++.++++++++++++++....... .....+ ....
T Consensus 96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~-~~~~------------------ 148 (620)
T 4dg8_A 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV-PVRH------------------ 148 (620)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE-EGGG------------------
T ss_pred HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee-eecc------------------
Confidence 9999999999999999999999999999999999765432211 011111 0000
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHH
Q 007672 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (594)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 279 (594)
.. ............++++++++|||||||.||||+++|+++.+.+.. ...+ ++.+++++++..|++|..
T Consensus 149 ---~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~ 217 (620)
T 4dg8_A 149 ---LP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDA 217 (620)
T ss_dssp ---CC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTH
T ss_pred ---CC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHH
Confidence 00 001111222346899999999999999999999999999887765 3333 688999999999999999
Q ss_pred HHHHHHHhhhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 280 ~~~~~l~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
++..++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+... .
T Consensus 218 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~--------------------- 273 (620)
T 4dg8_A 218 ATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP---D--------------------- 273 (620)
T ss_dssp HHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG---G---------------------
T ss_pred HHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh---h---------------------
Confidence 98888899999999998642 89999999999999999999999998864210 0
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC---c
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M 432 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~---~ 432 (594)
++ ++||.+++||+++++++.+.+.+.+ ++.+++.||+||++.+++...... .
T Consensus 274 ----------------~l--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 329 (620)
T 4dg8_A 274 ----------------CL--------GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLE 329 (620)
T ss_dssp ----------------GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGG
T ss_pred ----------------hC--------CCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccC
Confidence 11 2899999999999988887776655 899999999999998766543221 2
Q ss_pred cccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC--------CccccCceEEEc
Q 007672 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQIL 504 (594)
Q Consensus 433 ~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~--------g~~~TGDlg~~~ 504 (594)
....++|+|+++++++|+| +++.. .++.|+.|||+|+|+++++||+++++.+++.|.+ +||+|||+|+++
T Consensus 330 ~~~~~iG~p~~~~~~~i~d-~~~~~-~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~ 407 (620)
T 4dg8_A 330 EDDIPIGKAIAGTAVLLLD-EHGQE-IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD 407 (620)
T ss_dssp SSSCCCBEECTTEEEEEEC-TTSCB-CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC
T ss_pred CCCCCceecccCcEEEEEC-ccCCC-CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC
Confidence 2346899999999999999 55543 2445689999999999999999999999999943 799999999999
Q ss_pred CCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCch-----hhcccccccce----eeeEeeeec-
Q 007672 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSSC-----AMRRRHQKVGI----LEWSCWFIP- 574 (594)
Q Consensus 505 ~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~~-----~~~~~~~~~~~----~~~~~~~~p- 574 (594)
+||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++. +++........ ..++.|++|
T Consensus 408 ~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~~~~~l~~~Lp~y~~P~ 486 (620)
T 4dg8_A 408 EQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLRQLPTWQRPH 486 (620)
T ss_dssp TTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCHHHHHHSCGGGSCS
T ss_pred CCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHHHHHHHHHhChhhcCCc
Confidence 99999999999999998 79999999999999999999999999887641 11111111001 123444444
Q ss_pred -----Cceeeecccccccccccc
Q 007672 575 -----GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 575 -----~~i~~~~~gk~~r~~~~~ 592 (594)
+.||+|++||+.|+++++
T Consensus 487 ~~~~v~~lP~t~~GKidR~~L~~ 509 (620)
T 4dg8_A 487 ACVRVEALPLTAHGKLDRAALLR 509 (620)
T ss_dssp EEEECSSCCCC----CCHHHHHH
T ss_pred EEEEECcCCCCcccCHhHHHHhh
Confidence 568999999999999853
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-69 Score=577.29 Aligned_cols=460 Identities=17% Similarity=0.183 Sum_probs=379.2
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
+++.++|+++|+++||++|+++. + +++||+||.++++++|++|++. |.++|++|+++++|+++++++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ---G------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 57999999999999999999864 3 6899999999999999999985 888999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|+++.++.+++.+++++++++++|++......... .. .....+
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~------~~----------------------~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG------QQ----------------------IQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC------CS----------------------SCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc------cc----------------------cceecH
Confidence 99999999999999999999999999999999997643211100 00 112344
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
+++...............++++++++|||||||.||+|++||+++.+.+......+ ++..++++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 55544332222223345688999999999999999999999999999998877776 7889999999999999999
Q ss_pred HHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 281 ~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
+...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..++....
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 253 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------- 253 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence 8888889999999999764 78999999999999999999999998764210
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC----
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~---- 431 (594)
....++ +++|.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++......
T Consensus 254 ------------~~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 254 ------------FSQDLL--------PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp ------------CSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred ------------cccccC--------CcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 111112 3899999999999999999999988 899999999999998766543221
Q ss_pred ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc--cCC--ccccCceEEEcCCC
Q 007672 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNG 507 (594)
Q Consensus 432 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~~g--~~~TGDlg~~~~dG 507 (594)
.....++|.|+++++++|+| +++.. ++.|+.|||+|+|++++.||+++++.+++.| .+| ||+|||+|++ +||
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG 389 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEGQP--LPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG 389 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTSCB--CCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred cCCcCCCcceeCCCEEEEEC-CCCCC--CCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence 12236799999999999999 66554 4556999999999999999999999999998 345 8999999999 599
Q ss_pred cEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc---------ee-----e
Q 007672 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG---------IL-----E 567 (594)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~---------~~-----~ 567 (594)
+|++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++++++ +++++...... +. .
T Consensus 390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~ 468 (511)
T 3e7w_A 390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAAS 468 (511)
T ss_dssp EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHH
T ss_pred eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhh
Confidence 99999999999997 8999999999999999999999999988764 33333222110 11 1
Q ss_pred eEe------eeecCceeeeccccccccccccC
Q 007672 568 WSC------WFIPGTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 568 ~~~------~~~p~~i~~~~~gk~~r~~~~~~ 593 (594)
++. +...+.||+|++||++|+++|+.
T Consensus 469 L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~ 500 (511)
T 3e7w_A 469 LPAYMIPRKFIYQDHIQMTANGKIDRKRIGEE 500 (511)
T ss_dssp SCGGGSCSEEEECSCCCBCTTSCBCHHHHHHH
T ss_pred CchhhCCeeEEEeccCCCCCCcCccHHHHHhH
Confidence 233 44456799999999999999863
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-69 Score=579.58 Aligned_cols=471 Identities=21% Similarity=0.200 Sum_probs=357.3
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
+||.++|+++++++||++|+++. + +++||+||.++++++|+.|++. +||+|+|+++|+++++++++||
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~ 68 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHAC 68 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHH
Confidence 36778999999999999999865 3 5899999999999999999986 8999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcce-eeH
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSW 200 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~ 200 (594)
+++|++++|+++.++.+++.+++++++++++|++............ ......+.......... ........ ...
T Consensus 69 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 143 (501)
T 3ipl_A 69 WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLL---DNTMGIQYDTSN 143 (501)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC-----------------------------
T ss_pred HHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccc---ccccccccccch
Confidence 9999999999999999999999999999999999765443321110 01111111100000000 00000000 001
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
+.+...............++++++++|||||||.||+|+++|+++.+.+......+ ++.+++++++++|++|.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 218 (501)
T 3ipl_A 144 ETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISG 218 (501)
T ss_dssp ------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHH
T ss_pred hhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHH
Confidence 11111111111223345789999999999999999999999999999998887776 7889999999999999999
Q ss_pred HHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 007672 281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359 (594)
Q Consensus 281 ~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (594)
+...+.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+....
T Consensus 219 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------- 271 (501)
T 3ipl_A 219 LSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH--------------------------- 271 (501)
T ss_dssp HHHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC---------------------------
T ss_pred HHHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC---------------------------
Confidence 9888889999999999877 999999999999999999999999998653110
Q ss_pred cCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC-ccccCcc
Q 007672 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTA 438 (594)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-~~~~~~~ 438 (594)
...+||.+++||+++++++.+.+.+ +++++++.||+||+++.+....+.. .....++
T Consensus 272 ---------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 329 (501)
T 3ipl_A 272 ---------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTV 329 (501)
T ss_dssp ---------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCC
T ss_pred ---------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCC
Confidence 0017999999999999999999987 4999999999999987655543322 2344789
Q ss_pred ccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCce
Q 007672 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 518 (594)
Q Consensus 439 G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~ 518 (594)
|.|+++++++|+| ++ .++.|||+|+|+.++.||+++++.+.. |.+|||+|||+|++|+||+|++.||.||+
T Consensus 330 G~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ 400 (501)
T 3ipl_A 330 GMPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDL 400 (501)
T ss_dssp BEECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCC
T ss_pred CCCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccce
Confidence 9999999999999 43 235799999999999999999999887 88999999999999999999999999999
Q ss_pred eEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccceeee--------Ee------eeecCcee
Q 007672 519 IKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGILEW--------SC------WFIPGTLF 578 (594)
Q Consensus 519 i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~~~~--------~~------~~~p~~i~ 578 (594)
||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +++++.....+..++ +. +...+.||
T Consensus 401 ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP 479 (501)
T 3ipl_A 401 IIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLSKHLAKYKVPKHFEKVDTLP 479 (501)
T ss_dssp EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCSEEEECSSCC
T ss_pred EEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCCHHHHHHHHHhhCccccCCCEEEEecccC
Confidence 995 8999999999999999999999999998775 344444333332222 33 44455789
Q ss_pred eeccccccccccccC
Q 007672 579 TCSATKLYPLRAEEC 593 (594)
Q Consensus 579 ~~~~gk~~r~~~~~~ 593 (594)
+|++||++|+++|+.
T Consensus 480 ~t~~GKi~R~~l~~~ 494 (501)
T 3ipl_A 480 YTSTGKLQRNKLYRE 494 (501)
T ss_dssp ---------------
T ss_pred CCCCCCEeHHHHhhc
Confidence 999999999999985
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-69 Score=579.50 Aligned_cols=460 Identities=17% Similarity=0.178 Sum_probs=373.9
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
+|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|+++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 57999999999999999999875 4 58999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (594)
+++|++++|+++.++.+++.+++++++++++|++....... ... .++..+ .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~~-~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LPV-RIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CSS-EEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------ccc-ceechh------------------hhh
Confidence 99999999999999999999999999999999985432110 000 111110 111
Q ss_pred HHHhcc-cccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 202 EFLHLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 202 ~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
.+.... ...........++++++++|||||||.||+|++||+++.+.+......+ ++.++|++++.+|++|..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 111111 1112223345789999999999999999999999999999998877776 7899999999999999999
Q ss_pred HHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 281 ~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
+...+.++..|+++++.+. ++..+++.|+++++|++.++|+++..++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8888889999999999874 89999999999999999999999988753210
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC----
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~---- 431 (594)
....++ +++|.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++......
T Consensus 255 ------------~~~~~~--------~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------FSESML--------PNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------CSTTTS--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------ccchhC--------ccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 111122 3899999999999999999999988 899999999999998776544332
Q ss_pred ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc----CCccccCceEEEcCCC
Q 007672 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNG 507 (594)
Q Consensus 432 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~----~g~~~TGDlg~~~~dG 507 (594)
.....++|.|.++++++|+| +++..+ +.|+.|||+|+||+++.||+++++.+++.|. +|||+|||+|++ +||
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g~~~--~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG 390 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDGTIA--PDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG 390 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSSCBC--CTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred ccCCCccccccCCcEEEEEC-CCCCCC--CCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence 12336899999999999999 666544 4568999999999999999999999999982 459999999999 799
Q ss_pred cEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc---------e-----ee
Q 007672 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG---------I-----LE 567 (594)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~---------~-----~~ 567 (594)
+|++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|+++++. +++++...... + ..
T Consensus 391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~ 469 (512)
T 3fce_A 391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNER 469 (512)
T ss_dssp EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTT
T ss_pred EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhh
Confidence 99999999999997 8999999999999999999999999987653 33443322110 1 11
Q ss_pred eEe------eeecCceeeecccccccccccc
Q 007672 568 WSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 568 ~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
++. +...+.||+|++||++|+++++
T Consensus 470 L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~ 500 (512)
T 3fce_A 470 LPNYMIPRKFMYQSSIPMTPNGKVDRKKLLS 500 (512)
T ss_dssp SCGGGSCSEEEECSCCCBCTTSSBCHHHHHH
T ss_pred CchhcCCeEEEEecccCCCCCcChHHHHHHh
Confidence 233 4555679999999999999875
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-68 Score=614.08 Aligned_cols=508 Identities=23% Similarity=0.296 Sum_probs=343.7
Q ss_pred CCCCCCCccccccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHH
Q 007672 16 DGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA 95 (594)
Q Consensus 16 ~~~~~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~ 95 (594)
.+.+....+|++......+ +...++.++|.++++++||++|+++. +. + +++||+||.++++++|+.|++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~--~--~~~TY~eL~~~~~~lA~~L~~ 107 (979)
T 3tsy_A 39 SNNNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PT--G--HVYTYSDVHVISRQIAANFHK 107 (979)
T ss_dssp ------CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CC--C--cEEEHHHHHHHHHHHHHHHHH
Confidence 3344556677766543333 34589999999999999999999864 32 2 689999999999999999999
Q ss_pred cCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccE
Q 007672 96 SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRV 175 (594)
Q Consensus 96 ~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 175 (594)
+|+++||+|+|+++|+++++++++||+++|++++|++|.++++++.+++++++++++|++......+...... ....
T Consensus 108 ~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~ 184 (979)
T 3tsy_A 108 LGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND---DGVV 184 (979)
T ss_dssp TTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT---SCCE
T ss_pred cCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc---CCce
Confidence 9999999999999999999999999999999999999999999999999999999999998765544322211 1123
Q ss_pred EEEecCCcHHHHHHHhhCCcceeeHHHHHhcccc--cccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhh
Q 007672 176 MVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253 (594)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~ 253 (594)
++.+++... .........|.++...... .........++++++++|||||||.||+|+++|+++++.+....
T Consensus 185 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 258 (979)
T 3tsy_A 185 IVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV 258 (979)
T ss_dssp EEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHH
T ss_pred EEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHH
Confidence 444443211 0111234455555543322 12233346789999999999999999999999999998876654
Q ss_pred hhhccccCCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHH
Q 007672 254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331 (594)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~ 331 (594)
.... ....+.+++++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|.+...
T Consensus 259 ~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 337 (979)
T 3tsy_A 259 DGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE 337 (979)
T ss_dssp CSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG
T ss_pred Hhhc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc
Confidence 3211 0125778999999999999999865 6778999999999876 99999999999999999999999998865211
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCc
Q 007672 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAF 410 (594)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~ 410 (594)
....+++ +||.+++||+++++++.+++.+.+ ++.
T Consensus 338 -------------------------------------~~~~~l~--------~lr~~~~gg~~l~~~~~~~~~~~~~~~~ 372 (979)
T 3tsy_A 338 -------------------------------------TEKYDLS--------SIRVVKSGAAPLGKELEDAVNAKFPNAK 372 (979)
T ss_dssp -------------------------------------GGTSCCT--------TCCEEEESSCCCCSSHHHHHHHHCTTCE
T ss_pred -------------------------------------ccCCCcc--------ceEEEEEcCCCCCHHHHHHHHHHCCCCe
Confidence 1122233 899999999999999999999888 899
Q ss_pred eEeeecccCCCCceeccC----CCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhh
Q 007672 411 LVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486 (594)
Q Consensus 411 i~~~yG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~ 486 (594)
+++.||+||++.+++... .......+++|.|+++++++|+|.+++ .+++.|+.|||+|+|++++.||+++|+.+
T Consensus 373 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~--~~~~~g~~GEl~i~g~~v~~GY~~~p~~t 450 (979)
T 3tsy_A 373 LGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTG--DSLSRNQPGEICIRGHQIMKGYLNNPAAT 450 (979)
T ss_dssp EEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSC--CBCCTTCCEEEEEESTTSCSEETTCHHHH
T ss_pred EEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCC--CCCCCCCccEEEEECCCccccccCChhhh
Confidence 999999999998765542 112233478999999999999993334 34556699999999999999999999999
Q ss_pred hhcc-cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccc
Q 007672 487 RESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRR 559 (594)
Q Consensus 487 ~~~~-~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~ 559 (594)
++.| .+|||+|||+|++|+||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++.
T Consensus 451 ~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~ 529 (979)
T 3tsy_A 451 AETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK 529 (979)
T ss_dssp HHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------------------------------------------
T ss_pred hhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEE
Confidence 9999 8999999999999999999999999999997 7999999999999999999999999998774 444443
Q ss_pred c--cccceee--------eEeeeec------Cceeeecccccccccccc
Q 007672 560 H--QKVGILE--------WSCWFIP------GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 560 ~--~~~~~~~--------~~~~~~p------~~i~~~~~gk~~r~~~~~ 592 (594)
. ...+..+ ++.|++| +.||+|++||++|+++|+
T Consensus 530 ~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~ 578 (979)
T 3tsy_A 530 SKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRA 578 (979)
T ss_dssp -------------------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHH
Confidence 2 1222222 2445555 678999999999999986
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-68 Score=574.45 Aligned_cols=461 Identities=16% Similarity=0.136 Sum_probs=368.2
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
+.++.++|+++++++||++|+.+. + +++||+||.++++++|++|++.|+++||+|+|+++|+++++++++|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL---G------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999875 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|+++.++.+++.+++++++++++|++.+....+ ... . ...+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------~~~-~---------------------~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------EGI-S---------------------LVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------TTS-E---------------------EEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc--------ccC-c---------------------ccch
Confidence 999999999999999999999999999999999987643221 011 1 1122
Q ss_pred HHHHhcc--cccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 201 ~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
.++.... ...........++++++++|||||||.||+|++||+++++.+....... ...+...+++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 2221111 0111223345789999999999999999999999999998877655431 1267889999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
.++..++.++..|+++++.+. ++..+++.|.++++|++.++|+++..+.....
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 257 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD----------------------- 257 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence 888778888999999998764 88999999999999999999999988753110
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC--
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-- 431 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~-- 431 (594)
....++ +++|.+++||+++++++.+.+.+.+ ++.+++.||+||++++++......
T Consensus 258 --------------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 258 --------------FCQAKM--------PALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp --------------CSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred --------------cccccC--------ccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 011112 2899999999999999999998888 899999999999998766543221
Q ss_pred --ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc----cCCccccCceEEEcC
Q 007672 432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILP 505 (594)
Q Consensus 432 --~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~----~~g~~~TGDlg~~~~ 505 (594)
.....++|+|+++++++|+| +++..+ +.|+.|||+|+||+++.||+++++.+++.| .+|||+|||+|++|+
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~~~--~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~ 392 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDGKEL--SSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTSCBC--CTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCccccccccCCCEEEEEC-CCcCCC--CCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence 11236899999999999999 666544 456899999999999999999999999988 356999999999999
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc-------hhhcccccccc------------e-
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS-------CAMRRRHQKVG------------I- 565 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~-------~~~~~~~~~~~------------~- 565 (594)
||+|++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++. +++++...... +
T Consensus 393 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~ 471 (521)
T 3l8c_A 393 DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIK 471 (521)
T ss_dssp SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHH
T ss_pred CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHH
Confidence 9999999999999997 7999999999999999999999999987642 33433322111 0
Q ss_pred ----eeeEe------eeecCceeeecccccccccccc
Q 007672 566 ----LEWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 566 ----~~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
..++. +...+.||+|++||++|++|++
T Consensus 472 ~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~ 508 (521)
T 3l8c_A 472 ASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLIN 508 (521)
T ss_dssp HHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHH
T ss_pred HHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhh
Confidence 11233 4445679999999999999876
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-68 Score=571.74 Aligned_cols=458 Identities=24% Similarity=0.275 Sum_probs=354.4
Q ss_pred CCCcCcHHHHHHHHHHcCCC-CcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 007672 38 DSDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (594)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~pd-~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~ 116 (594)
...++++.+.|.++++++|+ ++|+++. + +++||+||.++++++|+.|. .|++|+|+++|++++++
T Consensus 18 ~~~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~ 83 (505)
T 3nyq_A 18 GSHMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGV 83 (505)
T ss_dssp ------CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHH
T ss_pred CcccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHH
Confidence 34578999999999999887 9999875 3 68999999999999998774 48899999999999999
Q ss_pred HHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcc
Q 007672 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (594)
Q Consensus 117 ~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (594)
+++||+++|++++|++|.++.+++.+++++++++++|++..... .........+ ..+...
T Consensus 84 ~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~~------------- 143 (505)
T 3nyq_A 84 AVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVRA------------- 143 (505)
T ss_dssp HHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTTC-------------
T ss_pred HHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-cccccc-------------
Confidence 99999999999999999999999999999999999999865211 0011111111 111100
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChh
Q 007672 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (594)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 276 (594)
..........++++++++|||||||.||+|+++|+++.+.+......+ ++..+|++++.+|++
T Consensus 144 ------------~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 206 (505)
T 3nyq_A 144 ------------RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLF 206 (505)
T ss_dssp ------------CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTT
T ss_pred ------------ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHH
Confidence 111122345688999999999999999999999999999999888777 788999999999999
Q ss_pred HHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 277 ~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
|..++.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..|++.......
T Consensus 207 ~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~------------------- 266 (505)
T 3nyq_A 207 HVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE------------------- 266 (505)
T ss_dssp SHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH-------------------
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch-------------------
Confidence 9999875 7788999999998876 899999999 88999999999999998764221110
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccc
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 434 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~ 434 (594)
...+++ ++|.+++||+++++++.+++.+.+++.+++.||+||++..++...... ..
T Consensus 267 ---------------~~~~l~--------~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~ 322 (505)
T 3nyq_A 267 ---------------LAKALA--------GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PR 322 (505)
T ss_dssp ---------------HHHHHH--------HCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CC
T ss_pred ---------------hhcccc--------cceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CC
Confidence 111233 799999999999999999999988999999999999987766654433 33
Q ss_pred cCccccCccCceEEeeecCCCCCCCC-CCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEEE
Q 007672 435 VGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII 512 (594)
Q Consensus 435 ~~~~G~~~~~~~~~i~d~~~~~~~~~-~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~ 512 (594)
.+++|+|+++++++|+| +++..++. +.|+.|||+|+|++++.||+++++.+++.| .+|||+|||+|++|+||+|++.
T Consensus 323 ~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~ 401 (505)
T 3nyq_A 323 AGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIV 401 (505)
T ss_dssp TTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEE
T ss_pred CCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEe
Confidence 48999999999999999 66666554 446899999999999999999999999999 7999999999999999999999
Q ss_pred ecc-CceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc---ccceee--------eEee---
Q 007672 513 DRK-KNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ---KVGILE--------WSCW--- 571 (594)
Q Consensus 513 GR~-~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~---~~~~~~--------~~~~--- 571 (594)
||. ||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +++++... .....+ ++.|
T Consensus 402 GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P 480 (505)
T 3nyq_A 402 GRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRP 480 (505)
T ss_dssp EESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSC
T ss_pred CCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCc
Confidence 998 589996 8999999999999999999999999998774 44444332 111112 2334
Q ss_pred ---eecCceeeecccccccccccc
Q 007672 572 ---FIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 572 ---~~p~~i~~~~~gk~~r~~~~~ 592 (594)
...+.||+|++||++|+++++
T Consensus 481 ~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 481 RVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp SEEEECSCCCC-------------
T ss_pred cEEEEECCCCCCCCcCeeHHhhcc
Confidence 444568999999999999985
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-67 Score=572.45 Aligned_cols=476 Identities=17% Similarity=0.203 Sum_probs=377.2
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
....++.++|+++|+++||++|+++. ++ +..+++||+||.++++++|++|+++|+++||+|+|+++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 35689999999999999999999986 42 22379999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCC---ChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCc
Q 007672 119 EACNALSLICVPLYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 195 (594)
+||+++|++++|++|.. +.+++.++++.+++++++++.+....+........+....+....
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 147 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA--------------- 147 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE---------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee---------------
Confidence 99999999999999987 457899999999999999998877665432211111111111111
Q ss_pred ceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecCh
Q 007672 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (594)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 275 (594)
++.+.... ..........++++++++|||||||.||+|++||+++++.+......+ ++.++|++++++|+
T Consensus 148 ----~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 217 (590)
T 3kxw_A 148 ----LESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP 217 (590)
T ss_dssp ----GGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred ----chhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence 11111000 111223445789999999999999999999999999999999887776 78999999999999
Q ss_pred hHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 007672 276 AHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 349 (594)
Q Consensus 276 ~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (594)
+|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+.+....
T Consensus 218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----------------- 280 (590)
T 3kxw_A 218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIRE----------------- 280 (590)
T ss_dssp TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCG-----------------
T ss_pred CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhh-----------------
Confidence 99999986 7788999999999764 789999999999999999999999988653211
Q ss_pred HHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc------CCceEeeecccCCCCc
Q 007672 350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC------CAFLVQGYGLTETCGP 423 (594)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~------~~~i~~~yG~tE~~~~ 423 (594)
......+++ +||.+++||+++++++.+.+.+.+ ++.+++.||+||++++
T Consensus 281 -----------------~~~~~~~l~--------~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~ 335 (590)
T 3kxw_A 281 -----------------EKKEGLDLS--------SWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLL 335 (590)
T ss_dssp -----------------GGGTTCCCT--------TCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSE
T ss_pred -----------------hhccCCCch--------hhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccce
Confidence 111112233 899999999999999999998887 3479999999999998
Q ss_pred eeccCCC--------------------------CccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCccc
Q 007672 424 TTVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477 (594)
Q Consensus 424 ~~~~~~~--------------------------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~ 477 (594)
++...+. ......++|.|+++ ++|+| +++ ..+++.|+.|||+|+||+++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~ 411 (590)
T 3kxw_A 336 VTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVAK 411 (590)
T ss_dssp EEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSCC
T ss_pred eecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCcccc
Confidence 7754321 11233688999998 88888 442 345556799999999999999
Q ss_pred ccCCCchhhhhcccC-------C--ccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHH-hcCCCcc--ce
Q 007672 478 GYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DP 545 (594)
Q Consensus 478 gY~~~~~~~~~~~~~-------g--~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-~~~p~V~--~~ 545 (594)
||+++++.+++.|.+ | ||+|||+|++| ||+|++.||.||+||+ +|++|+|.|||++| ..+|.|. +|
T Consensus 412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~ 489 (590)
T 3kxw_A 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKC 489 (590)
T ss_dssp CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEE
T ss_pred cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccE
Confidence 999999999999843 5 99999999999 9999999999999997 89999999999999 8899998 89
Q ss_pred EEeecCCc-----hhhccccc----ccceeee------------------EeeeecCceeeecccccccccccc
Q 007672 546 QVNVSCSS-----CAMRRRHQ----KVGILEW------------------SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 546 ~V~g~~~~-----~~~~~~~~----~~~~~~~------------------~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+|++++++ +++++... ..+..++ ..++..+.||+|++||++|+++|+
T Consensus 490 ~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~ 563 (590)
T 3kxw_A 490 AAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRK 563 (590)
T ss_dssp EEEEEEETTEEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHH
T ss_pred EEEEecCCCCceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHH
Confidence 99987764 22222211 1111111 123334789999999999999875
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-66 Score=562.83 Aligned_cols=476 Identities=16% Similarity=0.129 Sum_probs=317.5
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCC----CCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW 114 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~----~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~ 114 (594)
....++.++|+++|+++||++|+++. ++ ..+..+++||+||.++++++|+.|++.|+ +||+|+|+++|++++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 45688999999999999999999976 32 22334789999999999999999999999 799999999999999
Q ss_pred HHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCC
Q 007672 115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (594)
Q Consensus 115 ~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 194 (594)
+++++||+++|++++|+++.++.+++.+++++++++++|+++....... ......++.....
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~------------ 154 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKNQ------------ 154 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTCH------------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccch------------
Confidence 9999999999999999999999999999999999999999876543321 0111122221111
Q ss_pred cceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhc---cccCCCCCCcEEEE
Q 007672 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVYLS 271 (594)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~ 271 (594)
.+.+..... ..........++++++++|||||||.||+|+++|+++.+.+..+...+. .....+...+++++
T Consensus 155 ----~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (562)
T 3ite_A 155 ----SFIENLSTQ-DTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC 229 (562)
T ss_dssp ----HHHHHHHHS-CCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEEC
T ss_pred ----hhhhhcccc-cccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEE
Confidence 122222221 1111223446788999999999999999999999999988776554321 01124678899999
Q ss_pred ecChhHHHHHHHHHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 007672 272 FLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 349 (594)
Q Consensus 272 ~~pl~~~~~~~~~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (594)
..|+.|..++...+.++..|+++++.+. .+..+++.++++++|+++++|++++.+...
T Consensus 230 ~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-------------------- 289 (562)
T 3ite_A 230 LASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-------------------- 289 (562)
T ss_dssp CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC--------------------
T ss_pred ecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC--------------------
Confidence 9999998888778889999999988765 467889999999999999999987765210
Q ss_pred HHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCC
Q 007672 350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429 (594)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 429 (594)
..++ ++||.+++||+++++++.+.+.+.+++.+++.||+||++..++....
T Consensus 290 ---------------------~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 340 (562)
T 3ite_A 290 ---------------------PEDA--------PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRI 340 (562)
T ss_dssp ---------------------GGGS--------TTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEEC
T ss_pred ---------------------cccc--------CceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeee
Confidence 0012 28999999999999999999998889999999999999987776554
Q ss_pred CCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCC--ccccCceEEEcCCC
Q 007672 430 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQILPNG 507 (594)
Q Consensus 430 ~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g--~~~TGDlg~~~~dG 507 (594)
.......++|+|+++++++|+| ++++ .+++.|+.|||+|+|++++.|||++++.+...+.+| ||+|||+|++|+||
T Consensus 341 ~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG 418 (562)
T 3ite_A 341 LPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADS 418 (562)
T ss_dssp CTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTS
T ss_pred cCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCC
Confidence 4444447899999999999999 4332 345566999999999999999999999988777777 99999999999999
Q ss_pred cEEEEeccCceeEcCCceeechHHHHHHHhcC-CCccceEEeecCCc------h-hhccc-cccc---------------
Q 007672 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVA-PIIEDPQVNVSCSS------C-AMRRR-HQKV--------------- 563 (594)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~-p~V~~~~V~g~~~~------~-~~~~~-~~~~--------------- 563 (594)
+|++.||.||+||+ +|++|+|.|||++|.+| |.+.+++|++.+++ + +++.. ....
T Consensus 419 ~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 497 (562)
T 3ite_A 419 SILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEIN 497 (562)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred eEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHH
Confidence 99999999999996 89999999999999998 88889999887764 1 12211 1111
Q ss_pred -cee-----eeEeeeecC------ceeee-ccccccccccccC
Q 007672 564 -GIL-----EWSCWFIPG------TLFTC-SATKLYPLRAEEC 593 (594)
Q Consensus 564 -~~~-----~~~~~~~p~------~i~~~-~~gk~~r~~~~~~ 593 (594)
.+. .++.|++|+ .||+| ++||++|+++++.
T Consensus 498 ~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~ 540 (562)
T 3ite_A 498 NSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHM 540 (562)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHH
Confidence 111 234466655 58888 8999999999863
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-64 Score=595.33 Aligned_cols=460 Identities=19% Similarity=0.230 Sum_probs=378.5
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..++.++|.++++++||++|+++. + +++||+||.++++++|+.|++.|+++|++|+|+++|+++++++++|
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999875 4 4899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|++|.++.+++.++++++++++++++......... .+.....+.+++... +
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------------~ 593 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR---------------F 593 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG---------------G
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc---------------c
Confidence 99999999999999999999999999999999998765433211 111223333332110 0
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
.. ..........++++|+++|||||||.||||+++|+++.+.. .....+ ++.+++++++..|+.|..+
T Consensus 594 ----~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~-----~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 594 ----EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYM-----AFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp ----GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred ----cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhc-----CCCCCCEEEEECCccHHHH
Confidence 00 11112234568999999999999999999999999998763 333333 6789999999999999888
Q ss_pred HHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 281 ~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
...++.++..|+++++.+. ++..+++.|+++++|+++++|++++.+.+....
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------ 717 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------ 717 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------
Confidence 8778889999999999864 899999999999999999999999988642100
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC---c
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M 432 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~---~ 432 (594)
.++ +||.+++||+++++++.+.+.+.+ ++.++|.||+||++.+++...... .
T Consensus 718 ----------------~~~--------~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 718 ----------------WMK--------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp ----------------HHH--------TCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred ----------------cCC--------CccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 011 899999999999999999888776 478999999999998776543321 2
Q ss_pred cccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-c------CCccccCceEEEcC
Q 007672 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I------DGWFHTGDIGQILP 505 (594)
Q Consensus 433 ~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~------~g~~~TGDlg~~~~ 505 (594)
....++|+|++|++++|+| +++..+ +.|+.|||+|+|+++++||+++|+.|+++| . ++||+|||+|++++
T Consensus 774 ~~~~~iG~p~~~~~~~i~d-~~~~~~--p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~ 850 (1304)
T 2vsq_A 774 ISSLPIGKPISNASVYILN-EQSQLQ--PFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP 850 (1304)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSCBC--CTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred CCCCCCceeeCCCEEEEEC-CCcCCC--CCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence 2236899999999999999 666544 455999999999999999999999999999 3 24999999999999
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccccccee--------eeEee
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGIL--------EWSCW 571 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~~--------~~~~~ 571 (594)
||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. +++++.....+.. .++.|
T Consensus 851 dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~~~~~l~~~l~~~Lp~y 929 (1304)
T 2vsq_A 851 DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQLPAY 929 (1304)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSSCHHHHHHHHHHHSCGG
T ss_pred CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCCCHHHHHHHHHHhChHh
Confidence 9999999999999998 7999999999999999999999999987653 4455443333322 23556
Q ss_pred eecC------ceeeeccccccccccccC
Q 007672 572 FIPG------TLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 572 ~~p~------~i~~~~~gk~~r~~~~~~ 593 (594)
++|. .||+|++||+.|+.++++
T Consensus 930 mvP~~~~~l~~lP~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 930 MVPQTFTFLDELPLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp GSCSEEEEESCCCCCSSCSSCCSCCCCC
T ss_pred hhccEEEEecccCCCCCcccCHhhcCCc
Confidence 6664 689999999999999764
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-58 Score=487.49 Aligned_cols=401 Identities=16% Similarity=0.196 Sum_probs=312.6
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
..+++.++|+++++++||++|+++....++..|.++++||+||.++++++|+.|+++|+ +||+|+|+++|+++++++++
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 46889999999999999999999871111345556899999999999999999999996 99999999999999999999
Q ss_pred HHHhcCCEEeecCC---CCChhHHHHHHhhcCceEEEEcchhHHHHhccccccc-ccccEEEEecCCcHHHHHHHhhCCc
Q 007672 120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQTGI 195 (594)
Q Consensus 120 A~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~ 195 (594)
||+++|++++|+++ ..+.+++.+++++++++++|++......+........ .....++..+...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 7789999999999999999999887665543322110 0111222222111
Q ss_pred ceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCC------CcEE
Q 007672 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDVY 269 (594)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~------~~~~ 269 (594)
. ............++++++++|||||||.||+|++||+++++.+......+ .+.. ++++
T Consensus 169 ---------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~ 233 (480)
T 3t5a_A 169 ---------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL 233 (480)
T ss_dssp ---------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred ---------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence 0 00111223345688999999999999999999999999999988877766 4555 8999
Q ss_pred EEecChhHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 007672 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (594)
Q Consensus 270 ~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (594)
++++|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++| +..+|+++..++.....
T Consensus 234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~----------- 301 (480)
T 3t5a_A 234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT----------- 301 (480)
T ss_dssp EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC-----------
T ss_pred EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC-----------
Confidence 99999999999865 6788999999999763 899999999999999 88899888877642110
Q ss_pred HHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC------CceEeeecc
Q 007672 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGL 417 (594)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~------~~i~~~yG~ 417 (594)
.......+++ +||.+++||+++++++.+.+.+.++ +.+++.||+
T Consensus 302 ----------------------~~~~~~~~l~--------~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~ 351 (480)
T 3t5a_A 302 ----------------------DDDMAGRDLG--------NILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL 351 (480)
T ss_dssp ----------------------TGGGTTCCCT--------TCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred ----------------------cccccccchh--------hhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence 0111122233 8999999999999999999998873 479999999
Q ss_pred cCCCCceeccCCCC------------------------ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccC
Q 007672 418 TETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK 473 (594)
Q Consensus 418 tE~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~ 473 (594)
||++.+++...... .....++|+|++ ++++|+| +++ ..+++.|+.|||+|+|+
T Consensus 352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~-g~~~~~g~~GEl~v~g~ 428 (480)
T 3t5a_A 352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDT-CIECPDGTVGEIWVHGD 428 (480)
T ss_dssp TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTT-TEECCTTBCEEEEEEST
T ss_pred cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCC-CcCCCCCCEEEEEEeCC
Confidence 99999877655432 123368999999 9999999 442 23445569999999999
Q ss_pred CcccccCCCchhhhhcc------------cCCccccCceEEEcCCCcEEEEec
Q 007672 474 TLFSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR 514 (594)
Q Consensus 474 ~v~~gY~~~~~~~~~~~------------~~g~~~TGDlg~~~~dG~l~~~GR 514 (594)
+++.||+++++.+++.| .+|||+|||+|++| ||+|+++||
T Consensus 429 ~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred ccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999999999998 35699999999997 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=380.18 Aligned_cols=290 Identities=17% Similarity=0.096 Sum_probs=235.0
Q ss_pred CCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEec
Q 007672 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298 (594)
Q Consensus 219 ~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~ 298 (594)
.+++++|+|||||||.||+|++||+++.+.+......+ ++.++|++++++|++|.+|+..++.++..|+++++..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 47899999999999999999999999999998888777 8899999999999999999988888999999998876
Q ss_pred CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHH
Q 007672 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378 (594)
Q Consensus 299 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (594)
. ....++.|+++++|+++++|+++..|++... ...+++
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~--------------------------------------~~~~l~--- 148 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSA--------------------------------------TSGQVD--- 148 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTT--------------------------------------TGGGGG---
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhcccc--------------------------------------ccccCC---
Confidence 4 2334678999999999999999998865211 111233
Q ss_pred HHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCC
Q 007672 379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458 (594)
Q Consensus 379 ~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~ 458 (594)
+||.+++||+++++++.+++.+ +++++++.||+||+++.+.......... +++|.+.|++++.+.+
T Consensus 149 -----~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 149 -----RLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp -----GGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred -----cceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 8999999999999999999987 4999999999999998877766554443 7899999999888755
Q ss_pred CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHH--
Q 007672 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-- 536 (594)
Q Consensus 459 ~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-- 536 (594)
.|||+++|+.. .+|||+|||+|++|+|| ++++||.||+||+ +|++|+|.|||++|
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~ 271 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA 271 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence 59999998632 37899999999999888 6677999999996 89999999999887
Q ss_pred -hcCCCccceEEe-ecCCc------hhhccccc-cccee--------eeEeeeec------Cceeeecccccccccccc
Q 007672 537 -CVAPIIEDPQVN-VSCSS------CAMRRRHQ-KVGIL--------EWSCWFIP------GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 537 -~~~p~V~~~~V~-g~~~~------~~~~~~~~-~~~~~--------~~~~~~~p------~~i~~~~~gk~~r~~~~~ 592 (594)
.+||.|.+|+|+ +.+|+ +++++... ....+ .++.|++| +.||+|++||++|+.+++
T Consensus 272 ~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~ 350 (358)
T 4gs5_A 272 VFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQ 350 (358)
T ss_dssp HHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHH
T ss_pred hccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHH
Confidence 468999999887 55553 33433321 11111 12334444 568999999999998865
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=362.14 Aligned_cols=308 Identities=15% Similarity=0.131 Sum_probs=233.7
Q ss_pred CCC-CCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHH-HHHHhhhcCcEE
Q 007672 217 PQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGASV 294 (594)
Q Consensus 217 ~~~-~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~-~~l~~l~~G~~~ 294 (594)
..+ +++++++|||||||.||+|+++|+++.+.+..+...+.. .++.++|++++..|+.|..+.. ..+.++..|+++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~ 159 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLT 159 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEE
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEE
Confidence 455 899999999999999999999999998776665432211 2678899999999987655544 567789999999
Q ss_pred EEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHh
Q 007672 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (594)
Q Consensus 295 ~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (594)
++.+. ++..+++.|+++++|+++++|+++..|++......... +
T Consensus 160 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-----------------------------------~ 204 (436)
T 3qov_A 160 VPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP-----------------------------------R 204 (436)
T ss_dssp ECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------T
T ss_pred EeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------c
Confidence 98765 89999999999999999999999999986543221110 0
Q ss_pred hHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCc-eeccCCCCccccCccccCccCceEEeeec
Q 007672 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (594)
Q Consensus 374 l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~i~d~ 452 (594)
+ ++||.+++||+++++++.+.+.+.||+.+++.||+||+++. ........ ...+.+.+++.++|+|.
T Consensus 205 ~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~----~g~~~~~~~~~v~i~d~ 272 (436)
T 3qov_A 205 E--------TTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQEQ----NGMHFWEDCYLVEIIDP 272 (436)
T ss_dssp S--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTTC----SSEEECTTTEEEEEECT
T ss_pred c--------CCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCCC----CeeEEccCceEEEEEEC
Confidence 1 28999999999999999999999999999999999999654 33332211 33667788999999994
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCC------c---EEEEeccCceeEcCC
Q 007672 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKISQ 523 (594)
Q Consensus 453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG------~---l~~~GR~~d~i~~~~ 523 (594)
+++. +++.|+.|||+|+|. +...|.++||+|||+|++++|| + +++.||.||+|++ +
T Consensus 273 ~~g~--~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~ 337 (436)
T 3qov_A 273 ETGE--PVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-K 337 (436)
T ss_dssp TTCS--BCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-T
T ss_pred CCCC--CCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-C
Confidence 4444 445669999999983 2344578999999999999998 5 6999999999997 7
Q ss_pred ceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccce------eee-----------------Eeeeec
Q 007672 524 GEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGI------LEW-----------------SCWFIP 574 (594)
Q Consensus 524 G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~------~~~-----------------~~~~~p 574 (594)
|++|+|.+||++|.+||+|.+++|++++++ .++++.. .... .++ ..++.+
T Consensus 338 G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~ 416 (436)
T 3qov_A 338 GVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKK 416 (436)
T ss_dssp TEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECT
T ss_pred CEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 999999999999999999999999987763 3344333 1111 111 224445
Q ss_pred Cceeeecccccccccc
Q 007672 575 GTLFTCSATKLYPLRA 590 (594)
Q Consensus 575 ~~i~~~~~gk~~r~~~ 590 (594)
..||+|+ ||++|.-.
T Consensus 417 ~~lP~t~-GKi~R~~~ 431 (436)
T 3qov_A 417 GSLPQSE-GKAVRVKD 431 (436)
T ss_dssp TCCC--------CEEE
T ss_pred CcccCcC-CcceEEEe
Confidence 5999999 99988643
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=361.14 Aligned_cols=312 Identities=15% Similarity=0.119 Sum_probs=239.8
Q ss_pred CCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecCh-hHHHHHHHHHHhhhcCcEE
Q 007672 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (594)
Q Consensus 216 ~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl-~~~~~~~~~l~~l~~G~~~ 294 (594)
...++++++++|||||||.||+|+++|+++......+...+.. .++.++|++++.+|+ +|..++...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 3467899999999999999999999999998766554432111 267899999999999 5777776777888999999
Q ss_pred EEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHh
Q 007672 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (594)
Q Consensus 295 ~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (594)
++.+. ++..+++.|+++++|+++++|+++..|++......... +
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-----------------------------------~ 210 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP-----------------------------------A 210 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------------------------G
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc-----------------------------------c
Confidence 88766 99999999999999999999999999876533211100 0
Q ss_pred hHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCc-eeccCCCCccccCccccCccCceEEeeec
Q 007672 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (594)
Q Consensus 374 l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~i~d~ 452 (594)
+ +++|.+++||+++++++.+.+.+.+|+.+++.||+||+++. .....+... ...+.+.+++.++|+|.
T Consensus 211 ~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d~ 279 (443)
T 2y4o_A 211 E--------SSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIIDP 279 (443)
T ss_dssp G--------SSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEECT
T ss_pred c--------CCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEcC
Confidence 1 28999999999999999999998889999999999998543 333222111 12455678999999993
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCC-CcE-----EEEeccCceeEcCCcee
Q 007672 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEY 526 (594)
Q Consensus 453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~d-G~l-----~~~GR~~d~i~~~~G~~ 526 (594)
+++. +++.|+.|||+|+|. +.+.|.++||+|||+|++++| |++ ++.||.||+|++ +|++
T Consensus 280 ~~g~--~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~ 344 (443)
T 2y4o_A 280 VTGE--VLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVN 344 (443)
T ss_dssp TTCC--BCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEE
T ss_pred CCCC--CCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEE
Confidence 3344 455668999999983 234456899999999999999 987 899999999997 7999
Q ss_pred echHHHHHHHhcCCCccceEEeecCCc------hhhccccc-------ccceeee-----------------EeeeecCc
Q 007672 527 VALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ-------KVGILEW-----------------SCWFIPGT 576 (594)
Q Consensus 527 v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~-------~~~~~~~-----------------~~~~~p~~ 576 (594)
|+|.+||++|.+||+|.+++|++++++ +++++... ..+..++ ..++.++.
T Consensus 345 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~ 424 (443)
T 2y4o_A 345 VFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGG 424 (443)
T ss_dssp ECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTC
T ss_pred ECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCc
Confidence 999999999999999999999886543 33333221 0111111 12334468
Q ss_pred eeeecccccccccc
Q 007672 577 LFTCSATKLYPLRA 590 (594)
Q Consensus 577 i~~~~~gk~~r~~~ 590 (594)
||+|++||++|...
T Consensus 425 lP~t~~GKi~r~~~ 438 (443)
T 2y4o_A 425 IPATATGKARRVID 438 (443)
T ss_dssp SCCCTTSCCCSEEE
T ss_pred ccCccCCcceEEEe
Confidence 99999999999753
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=358.66 Aligned_cols=312 Identities=17% Similarity=0.111 Sum_probs=240.0
Q ss_pred CCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecCh-hHHHHHHHHHHhhhcCcEE
Q 007672 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (594)
Q Consensus 216 ~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl-~~~~~~~~~l~~l~~G~~~ 294 (594)
...++++++++|||||||.||+|+++|+++...+..+...+.. .++.++|++++.+|+ +|..++...+.++..|+++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 163 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV 163 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence 3467899999999999999999999999998776554432111 267889999999998 6777777778889999999
Q ss_pred EEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHh
Q 007672 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (594)
Q Consensus 295 ~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (594)
++.+. ++..+++.|+++++|+++++|+++..|++......... +
T Consensus 164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-----------------------------------~ 208 (437)
T 2y27_A 164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP-----------------------------------V 208 (437)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------------------------G
T ss_pred EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------c
Confidence 88766 99999999999999999999999999876543211100 0
Q ss_pred hHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCc-eeccCCCCccccCccccCccCceEEeeec
Q 007672 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (594)
Q Consensus 374 l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~i~d~ 452 (594)
+ +++|.+++||+++++++.+.+.+.+|+.+++.||+||+++. +....+... ...+.+.+++.++|+|.
T Consensus 209 ~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d~ 277 (437)
T 2y27_A 209 Q--------SSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIIDP 277 (437)
T ss_dssp G--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEECT
T ss_pred c--------CCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEcC
Confidence 1 28999999999999999999998889999999999998543 333322211 12556778999999993
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcC-CCcE-----EEEeccCceeEcCCcee
Q 007672 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGEY 526 (594)
Q Consensus 453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~-dG~l-----~~~GR~~d~i~~~~G~~ 526 (594)
+++ .+++.|+.|||+|+|. +.+.|.++||+|||+|++++ ||++ ++.||.||+|++ +|++
T Consensus 278 ~~g--~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~ 342 (437)
T 2y27_A 278 ETG--EVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVN 342 (437)
T ss_dssp TTC--CBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEE
T ss_pred CCC--CCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCeE
Confidence 334 4455679999999982 23445789999999999998 6985 899999999997 8999
Q ss_pred echHHHHHHHhcCCCccceEEeecCCc------hhhccccccc-----ceeee-----------------EeeeecCcee
Q 007672 527 VALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKV-----GILEW-----------------SCWFIPGTLF 578 (594)
Q Consensus 527 v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~-----~~~~~-----------------~~~~~p~~i~ 578 (594)
|+|.+||++|.+||+|.+++|++++++ +++++..... +..++ ..++.++.||
T Consensus 343 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP 422 (437)
T 2y27_A 343 VFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIE 422 (437)
T ss_dssp ECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSC
T ss_pred ECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCcc
Confidence 999999999999999999998886542 3333332111 10111 2233346899
Q ss_pred eeccccccccccc
Q 007672 579 TCSATKLYPLRAE 591 (594)
Q Consensus 579 ~~~~gk~~r~~~~ 591 (594)
+|+ ||++|...+
T Consensus 423 ~t~-GKi~r~~~~ 434 (437)
T 2y27_A 423 RSV-GKARRVVDK 434 (437)
T ss_dssp CCS-SSCCCEEEC
T ss_pred CCC-CcceEEEec
Confidence 999 999997644
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=246.07 Aligned_cols=237 Identities=17% Similarity=0.149 Sum_probs=172.2
Q ss_pred CCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecCh-hHHHHHHHHHHhhhcCcEEE
Q 007672 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG 295 (594)
Q Consensus 217 ~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl-~~~~~~~~~l~~l~~G~~~~ 295 (594)
..++++++++|||||||.||+|+++|+++...+..+...+. ..++..+|++++.+|+ +|..++...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ--HRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT--TSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH--hhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 36788999999999999999999999999998875443221 1267889999999999 99999888777788899443
Q ss_pred EecCChH-----------------------HHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007672 296 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (594)
Q Consensus 296 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (594)
....++. .+++.|+++++|+++++|+++..|++.....
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~------------------- 226 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV------------------- 226 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH-------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh-------------------
Confidence 3333666 7888999999999999999999987642211
Q ss_pred HHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHH-Hhc-CCceEeeecccCCCCceeccCCC
Q 007672 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPD 430 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~-~~~-~~~i~~~yG~tE~~~~~~~~~~~ 430 (594)
..+++ +||.+++||+++++++.+.+. +.| ++.+++.||+||+++++.....
T Consensus 227 ------------------~~~~~--------~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 227 ------------------LQMKQ--------SLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp ------------------HHHHH--------HCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred ------------------ccccC--------CeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 11222 899999999999999999999 888 8999999999999876643321
Q ss_pred CccccCccccC------ccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEc
Q 007672 431 EMCMVGTAGPV------SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504 (594)
Q Consensus 431 ~~~~~~~~G~~------~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~ 504 (594)
.++|.+ .++++++|+|.+++. +++.|+.|||+|++..- ..+ --.|+|||++...
T Consensus 280 -----~~~G~~~~~~~~~~~~~v~ivD~~~g~--~vp~G~~GEl~vt~l~~------------~~~-l~ry~tgD~~~~~ 339 (369)
T 3hgu_A 280 -----TSESQQVIYDSFSPFITYDVVDSITAQ--TVEYGERGNVIVTHLSP------------WAF-YPRVAERDTAIRL 339 (369)
T ss_dssp -----CTTCSSCEEECCTTTEEEEEECTTTCS--BCCTTCEEEEEEEEEET------------TEE-EEEEEEEEEEEEE
T ss_pred -----ccCCCcccccCCCCCeEEEEECCCCCc--CCCCCCceEEEEEEcCc------------ccc-cccccCCceEEEe
Confidence 147888 999999999922444 55567999999998321 111 1137899988875
Q ss_pred CC--C-------cEEEEeccCceeEc
Q 007672 505 PN--G-------VVKIIDRKKNLIKI 521 (594)
Q Consensus 505 ~d--G-------~l~~~GR~~d~i~~ 521 (594)
+. | .+..++|.++..+|
T Consensus 340 ~~~~g~~~d~~~~v~~~~~~~~~~~i 365 (369)
T 3hgu_A 340 PGVSGFAGDRLADIEPLKISEGRKVI 365 (369)
T ss_dssp CCSTTCSSCEEEEEEECC--------
T ss_pred cCCCCCcCcccccceeccccCCCcee
Confidence 43 2 24456666666665
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-10 Score=95.08 Aligned_cols=78 Identities=9% Similarity=0.006 Sum_probs=54.1
Q ss_pred eccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc----------------------cc
Q 007672 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK----------------------VG 564 (594)
Q Consensus 513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~----------------------~~ 564 (594)
.|.||||++ +|.||+|.+||++|.+||+|.+++|++++++ .++++.... .+
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~g 79 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhC
Confidence 389999997 7999999999999999999999999988764 222221110 11
Q ss_pred eeeeEeeeecCceeeecccccccc-cccc
Q 007672 565 ILEWSCWFIPGTLFTCSATKLYPL-RAEE 592 (594)
Q Consensus 565 ~~~~~~~~~p~~i~~~~~gk~~r~-~~~~ 592 (594)
+..-+.++.|++||+| +||++|- .+||
T Consensus 80 v~~~v~~v~~~~lPrt-sGKi~Rv~D~R~ 107 (109)
T 3lax_A 80 VTPRVKLVPKGALPKS-EGKAVRVKDLRK 107 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCEEECSC
T ss_pred CccceEEEcCCeecCC-CCCcchhhhhcc
Confidence 1111346667899998 6999984 3665
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-07 Score=100.33 Aligned_cols=132 Identities=18% Similarity=0.137 Sum_probs=82.0
Q ss_pred eeEEEEccCCCCHHHHHHHHHhc-CCceE-eeecccCCCCceeccCCCCccccCccc-cCccCc-eEEeeecCCCC-C--
Q 007672 385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEVPEMG-Y-- 457 (594)
Q Consensus 385 lr~i~~~G~~l~~~~~~~~~~~~-~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~G-~~~~~~-~~~i~d~~~~~-~-- 457 (594)
+..++.||. ..-...++..+ +.+++ ..|++||+ .+.....+.... ...+ ..+++. -.+.++.++.+ +
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~~~--~~~~~~L~~~~~ffEFip~~~~~~~~~ 375 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLDPLCKP--EDVSYTFMPNMSYFEFIPMDGGDKNDV 375 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEECSCTTSCG--GGCCEEECTTSSEEEEEECSTTCCSSC
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeeccCCCCCc--ccCceeecCCcEEEEEEeccccCCCcE
Confidence 555556662 22334444443 67777 89999995 333322222111 1222 223332 33444422211 1
Q ss_pred ---CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcC----CCcEEEEeccCceeEcCCceeechH
Q 007672 458 ---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGEYVALE 530 (594)
Q Consensus 458 ---~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~----dG~l~~~GR~~d~i~~~~G~~v~~~ 530 (594)
..+..|+.+||+++..+ |.|+ |++||+.+++. ...+.|.||.+|+|++ .|+++++.
T Consensus 376 v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~ 438 (581)
T 4eql_A 376 VDLEDVKLGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE 438 (581)
T ss_dssp EEGGGCCTTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred eCHHHcCCCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence 11225688999998852 4333 99999999975 3579999999999996 79999999
Q ss_pred HHHHHHhcC
Q 007672 531 YLENVYCVA 539 (594)
Q Consensus 531 ~iE~~l~~~ 539 (594)
+||++|.+.
T Consensus 439 ~v~~al~~a 447 (581)
T 4eql_A 439 DLFKAVSQA 447 (581)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999854
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-07 Score=99.98 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=80.6
Q ss_pred eeEEEEccCCCCHHHHHHHHHhc-CCceE-eeecccCCCCceeccCCCCccccCccc-cCccCc-eEEeeecCCC-----
Q 007672 385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEVPEM----- 455 (594)
Q Consensus 385 lr~i~~~G~~l~~~~~~~~~~~~-~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~G-~~~~~~-~~~i~d~~~~----- 455 (594)
+..++.|| + ..-...++..+ +.+++ ..|++||+ .+.....+.... ...+ ..+|+. -.+.++.++.
T Consensus 307 l~~~~tG~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~~p--~~~~~~L~p~~~ffEFIP~~~~~~~~~ 380 (609)
T 4b2g_A 307 LDVIVTGA--M-AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNLNPMSKP--SEVSYTIMPNMAYFEFLPHEHSSIPLS 380 (609)
T ss_dssp EEEECSGG--G-GGGHHHHHHHHTSCCEECCEEECSSC-EEEECSCTTSCG--GGCCEEECTTSCEEEEEEGGGTTSCCC
T ss_pred EEEEccCC--h-HHHHHHHHHHcCCCccccCcccccce-eeeeecCCCCCc--ccCceeecCCcEEEEEEeccccccccc
Confidence 44445555 3 22234444443 67777 89999996 333332222110 1112 122332 2334442221
Q ss_pred -C--C-----CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcC----CCcEEEEeccCceeEcCC
Q 007672 456 -G--Y-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQ 523 (594)
Q Consensus 456 -~--~-----~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~----dG~l~~~GR~~d~i~~~~ 523 (594)
. . ..+..|+.+||+++.. .|.|+ |++||+++++. ...+.|.||.+++|++ .
T Consensus 381 ~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~ 443 (609)
T 4b2g_A 381 RDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-D 443 (609)
T ss_dssp SSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred cCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-c
Confidence 0 0 1233568899999774 35554 99999999974 4679999999999996 7
Q ss_pred ceeechHHHHHHHhc
Q 007672 524 GEYVALEYLENVYCV 538 (594)
Q Consensus 524 G~~v~~~~iE~~l~~ 538 (594)
|+++++.+||++|.+
T Consensus 444 Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 444 SDKTDEAELQKAVDN 458 (609)
T ss_dssp SCCBCHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHH
Confidence 999999999999974
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.63 E-value=4e-07 Score=95.71 Aligned_cols=134 Identities=19% Similarity=0.150 Sum_probs=80.7
Q ss_pred CceeE--EEEccCCCCHHHHHHHHHhc-CCceE-eeecccCCCCceeccCCCCccccCccc-cCccCc-eEEeeecCCCC
Q 007672 383 GRLRL--VISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEVPEMG 456 (594)
Q Consensus 383 ~slr~--i~~~G~~l~~~~~~~~~~~~-~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~G-~~~~~~-~~~i~d~~~~~ 456 (594)
+++++ ++.+|. + ..-...+++.+ +++++ ..|++||+ .+.....+.... +..+ ..+|+. -.+.++.++..
T Consensus 302 Pnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~~~--~~~~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 302 PNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVTPRLSP--EEATFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp TTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCCTTSCT--TTCCEEECTTSCEEEEEEC----
T ss_pred CCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccce-eeeeecCCCCCc--cccceeecCCcEEEEEEeccccc
Confidence 47753 344442 3 22224444444 67777 89999996 333333222211 1122 223333 22334322111
Q ss_pred -----C---CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCC----CcEEEEeccCceeEcCCc
Q 007672 457 -----Y---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKNLIKISQG 524 (594)
Q Consensus 457 -----~---~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~d----G~l~~~GR~~d~i~~~~G 524 (594)
. ..+..|+.+||+++... |.|+ |++||+.++..- ..+.|.||.++++++ .|
T Consensus 377 ~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~G 439 (581)
T 4epl_A 377 EGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI-NI 439 (581)
T ss_dssp ---CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-SS
T ss_pred CCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-ee
Confidence 0 12335688999998853 4333 999999999642 469999999999997 79
Q ss_pred eeechHHHHHHHhc
Q 007672 525 EYVALEYLENVYCV 538 (594)
Q Consensus 525 ~~v~~~~iE~~l~~ 538 (594)
+++++.+||++|.+
T Consensus 440 e~~~~~~v~~al~~ 453 (581)
T 4epl_A 440 DKNTERDLQLSVES 453 (581)
T ss_dssp CCBCHHHHHHHHHH
T ss_pred eECCHHHHHHHHHH
Confidence 99999999999975
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.58 Score=47.86 Aligned_cols=124 Identities=14% Similarity=0.060 Sum_probs=90.1
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEee
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~--~~~~~~~~A~~~~G~~~v~ 130 (594)
.++.++++.. ..|.+|.++ .+|...+...+..++..+...|+.++|++....+.+ ...+...++++..|+.+++
T Consensus 88 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 3456665544 156677665 568899988888888888788999999999888853 4445567888999999887
Q ss_pred cCCCCChhHHHHHHhhcCceEEEEcchhHHHHhccccc-----ccccccEEEEecC
Q 007672 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTS 181 (594)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~ 181 (594)
++.. +++.+...+++.++++++........+.+.... ....++.+++-+.
T Consensus 166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 220 (437)
T 2y27_A 166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAE 220 (437)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCc
Confidence 7654 788999999999999999988777665443211 1245666666544
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=93.02 E-value=1.2 Score=45.56 Aligned_cols=123 Identities=13% Similarity=0.092 Sum_probs=89.8
Q ss_pred CCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEeec
Q 007672 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL 131 (594)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~--~~~~~~~~A~~~~G~~~v~i 131 (594)
++.++++.. ..|.+|.++ .+|...+...+..++..+...|+.++|+++..++.+ ...+...++++..|+.++++
T Consensus 91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 455564443 157788776 568889888888888888788999999999888853 34455678888999998877
Q ss_pred CCCCChhHHHHHHhhcCceEEEEcchhHHHHhccccc-----ccccccEEEEecC
Q 007672 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTS 181 (594)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~ 181 (594)
+.. +++.+...+++.++++++........+.+.... ....++.++.-+.
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 222 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAE 222 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCC
Confidence 654 788899999999999999988776665443211 1245666666544
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=92.98 E-value=0.97 Score=46.10 Aligned_cols=123 Identities=8% Similarity=-0.058 Sum_probs=90.8
Q ss_pred CCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEeecC
Q 007672 57 GNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY 132 (594)
Q Consensus 57 d~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~--~~~~~~~~A~~~~G~~~v~i~ 132 (594)
+.+|++.. ..|.+|.++ .+|...+...+..++..+...|+.++|+++...+-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 55565544 156777665 578999998888888888888999999999988753 444556788899999988775
Q ss_pred CCCChhHHHHHHhhcCceEEEEcchhHHHHhccccc-----ccccccEEEEecCC
Q 007672 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL 182 (594)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~ 182 (594)
+. .++.+...+++.++++++........+.+.... ....++.++.-+..
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 54 678899999999999999988877666443221 13456676665543
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=90.17 E-value=3.7 Score=42.53 Aligned_cols=121 Identities=7% Similarity=0.013 Sum_probs=86.0
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHHHHHHHhcCCEEeec
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL 131 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~-~~~~~~A~~~~G~~~v~i 131 (594)
.|+.+|++.. ..|.+|.++ .+|...+...+..+.. ..++.++|+++..+|-.-. .+..+++++..|+..+..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4677777655 256677665 5688888777666544 3488999999888776532 234467788899988877
Q ss_pred CCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecC
Q 007672 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181 (594)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 181 (594)
+ ..+++.+...+++.++++++........+..........++.++..+.
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~ 284 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGA 284 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSS
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCC
Confidence 5 467899999999999999999988877765544333335666655443
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=89.80 E-value=1.8 Score=42.93 Aligned_cols=123 Identities=13% Similarity=0.036 Sum_probs=80.0
Q ss_pred CCCCcceEeecccCCCCCCcEE--EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEee
Q 007672 55 YPGNRMLGWRPFVDGKFGPYVW--KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~~--~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~--~~~~~~~~A~~~~G~~~v~ 130 (594)
.++.++++.. ..|.+|.++. +|...+...+..++..+...|+.++|+++..++-+ ..-....++++..|+.+++
T Consensus 89 ~~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 3566666554 1577887764 57788888777776777777999999999988862 2334445556888985554
Q ss_pred cCCCCChh-----------------------HHHHHHhhcCceEEEEcchhHHHHhcccc---cccccccEEEEecC
Q 007672 131 LYDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 181 (594)
Q Consensus 131 i~~~~~~~-----------------------~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~v~~~~~ 181 (594)
.+ .++. .+...+++.++++++........+.+... .....++.++.-+.
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe 241 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGT 241 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESS
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCc
Confidence 43 3344 66779999999999998887776654321 12345666655543
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=85.02 E-value=12 Score=38.98 Aligned_cols=121 Identities=7% Similarity=-0.076 Sum_probs=84.5
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HH-HHHHHHhcCCEEe
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VE-AMEACNALSLICV 129 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~--~~-~~~A~~~~G~~~v 129 (594)
.|+.+|++.. ..|.+|.+| .+|...+...+...... .++.++|+++..+|-+-.+ .. .+++++..|+..+
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4677777655 246677665 67888887776655443 3788999988888765333 32 4788889999888
Q ss_pred ecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhccc---ccccccccEEEEecC
Q 007672 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (594)
Q Consensus 130 ~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~v~~~~~ 181 (594)
..+ ..+++.+...+++.++++++........+.+.. ......++.++.-+.
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 764 467889999999999999999887766654332 123356666666544
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=84.24 E-value=7.1 Score=40.98 Aligned_cols=121 Identities=11% Similarity=-0.017 Sum_probs=82.5
Q ss_pred CCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HHHHHHHHhcCCEEeecC
Q 007672 57 GNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICVPLY 132 (594)
Q Consensus 57 d~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~--~~~~~A~~~~G~~~v~i~ 132 (594)
+.+|++.. ..|.+|.++ .+|...+...+......+...++.++|+++..+|-+-.+ ...+++++ .|+..+.++
T Consensus 192 ~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMN--SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEEC--CSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEe--CCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 66776655 246666654 688988887766655443335788999988887765333 33456777 999888775
Q ss_pred CCCChhHHHHHHhhcCceEEEEcchhHHHHhcccc---cccccccEEEEecC
Q 007672 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 181 (594)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~v~~~~~ 181 (594)
..+++.+...+++.++++++........+.+... .....++.++.-+.
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 319 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGA 319 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSS
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCc
Confidence 4678999999999999999998887766643221 12345666655443
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=82.68 E-value=12 Score=39.02 Aligned_cols=122 Identities=11% Similarity=-0.048 Sum_probs=83.5
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HH-HHHHHHhcCCEEe
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VE-AMEACNALSLICV 129 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~--~~-~~~A~~~~G~~~v 129 (594)
.++.+|++.. ..|.+|.+| .+|...+...+...+.. .++.++|+++..+|.+..+ .. .+++++..|+..+
T Consensus 189 ~~~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEE--CCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEE--CCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 3567777655 146677665 67888888777666544 4889999999888765433 22 4788888999887
Q ss_pred ecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhccc---ccccccccEEEEecCC
Q 007672 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (594)
Q Consensus 130 ~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~ 182 (594)
..+ ...+..+...+++.++++++........+.+.. ......++.+++-+..
T Consensus 264 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~ 318 (544)
T 3o83_A 264 MAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGAS 318 (544)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCC
Confidence 764 457888899999999999999887766554332 1233466666665543
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=81.66 E-value=14 Score=38.24 Aligned_cols=119 Identities=8% Similarity=-0.057 Sum_probs=78.8
Q ss_pred CCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhcCCEEeec
Q 007672 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPL 131 (594)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~--~~~~A~~~~G~~~v~i 131 (594)
|+.+|++.. ..|.+|.+| .+|...+...+..++..+ ++.++|+++..+|-.-.+- ..+++++ .|+..+..
T Consensus 169 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMY--TSGTTGHPKGVVHTHESVHSAASSWASTI---DVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHHS---CCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEE--CCcccccCceeeeeHHHHHHHHHHHHHhc---CCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 466666554 156777776 678888877776665543 8899999998888764432 2345555 88887766
Q ss_pred CCCCChhHHHHHHhhcCceEEEEcchhHHHHhccc---ccccccccEEEEecC
Q 007672 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (594)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~v~~~~~ 181 (594)
+...++.+...+.+.+++++.........+.... ......++.++.-+.
T Consensus 243 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe 294 (517)
T 3r44_A 243 -PQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGA 294 (517)
T ss_dssp -SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSS
T ss_pred -CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCC
Confidence 4568889999999999999999887766554321 112345666655544
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=81.54 E-value=6.9 Score=41.31 Aligned_cols=122 Identities=9% Similarity=-0.012 Sum_probs=86.1
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch-hHHHHHHHHHhcCCEEeec
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP-QWVEAMEACNALSLICVPL 131 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~-~~~~~~~A~~~~G~~~v~i 131 (594)
.|+.+|++.. ..|.+|.+| .+|...+...... ....++.++|+++..+|-+. -....+++++..|+..+.+
T Consensus 212 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMF--TSGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEEC--CSSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 4677777655 246677665 6787776543221 22347889999988888753 3455677888899988777
Q ss_pred CC-CCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCC
Q 007672 132 YD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (594)
Q Consensus 132 ~~-~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (594)
.. ...+..+...+++.+++++.........+.+........++.++.-+..
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEP 337 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEeccc
Confidence 54 4578899999999999999999888777765555556677777776553
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=80.95 E-value=6.5 Score=42.06 Aligned_cols=122 Identities=13% Similarity=0.014 Sum_probs=85.7
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeec
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~-~~~~~A~~~~G~~~v~i 131 (594)
.|+.+|++.. ..|.+|.+| .+|...+...+.. ....++.++|+++..++-+-+. +..+++.+..|+.++..
T Consensus 162 ~~~d~a~iiy--TSGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINF--SSGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEE--EBSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 4677776655 157788776 5677666543322 2234789999999988876544 44467888899987776
Q ss_pred C-CCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCC
Q 007672 132 Y-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (594)
Q Consensus 132 ~-~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (594)
+ ...+++.+...+++.++++++........+..........++.+++-+..
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDI 287 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCc
Confidence 3 34678899999999999999998887776654444455677777776554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 594 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 3e-65 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 2e-58 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 2e-53 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 4e-45 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 3e-38 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 3e-37 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 8e-31 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 223 bits (569), Expect = 3e-65
Identities = 86/531 (16%), Positives = 169/531 (31%), Gaps = 74/531 (13%)
Query: 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
D LN A + +Q+ + W + +Y+E++ +V + + L
Sbjct: 67 EDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHI---SYRELHRDVCRFANTLLDL 123
Query: 97 GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
G + G V IY P+ AM AC + + ++ P AV + + V D
Sbjct: 124 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD 183
Query: 157 KKVKELLSPDCRSA-----QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
+ V+ S + + V + ++ + W L E
Sbjct: 184 EGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPE 243
Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
+ + I+YTSG++G PKGV+ T + + ++ + D+Y
Sbjct: 244 HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY----HPGDIYWC 299
Query: 272 FLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEK 325
+ + Y GA+ + G + + + + +L P
Sbjct: 300 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR- 358
Query: 326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385
A M G K E + + L
Sbjct: 359 ----------------------------ALMAEGDKAIEGTDRS--------------SL 376
Query: 386 RLVISGGAPLSTEV-EEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDEMCM-VGTAGPV 441
R++ S G P++ E E + + +V + TET G P + + G+A
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRP 436
Query: 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESII---DGWFH 496
+ L V G P + G + + + + + ++ +
Sbjct: 437 FFGVQPAL--VDNEG-HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 493
Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
+GD + +G I R +++ +S G + +E+ P I + V
Sbjct: 494 SGDGARRDEDGYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIAEAAV 543
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 202 bits (514), Expect = 2e-58
Identities = 120/530 (22%), Positives = 186/530 (35%), Gaps = 87/530 (16%)
Query: 33 GFPSV--DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIV 90
FPS D +LN WD + + ++ G TY EVY+ +++
Sbjct: 1 AFPSTMMDEELNL-WDFLERAAALFGRKEVV-----SRLHTGEVHRTTYAEVYQRARRLM 54
Query: 91 SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
LRA G G RV G N + +EA A + + L P + +IL+HAE D
Sbjct: 55 GGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE-D 113
Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
V + D + L+ + ++ V E
Sbjct: 114 KVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE--------------GYLAYEEALGE 159
Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
E + + C + YT+GT+G PKGVV +H + ++ DV L
Sbjct: 160 EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVL 216
Query: 271 SFLPLAHILDRVIEEYFFRRGASVGYY--HGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
+P+ H+ + GA D +L + T AGVP V+
Sbjct: 217 PVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW----- 271
Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
L + + LR +
Sbjct: 272 ----------------------------------------LALADYLESTGHRLKTLRRL 291
Query: 389 ISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP----------DEMCMVGTA 438
+ GG+ + + QGYGLTET F +++ +
Sbjct: 292 VVGGSAAPRSLIARFERMGVE-VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT 350
Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHT 497
G LR+ + E P D GEV ++G + GYY N + TR ++ DG+F T
Sbjct: 351 GLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 409
Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
GDI G V+I DR K+LIK GE+++ LEN P +++ V
Sbjct: 410 GDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHPKVKEAAV 458
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 190 bits (484), Expect = 2e-53
Identities = 88/536 (16%), Positives = 174/536 (32%), Gaps = 81/536 (15%)
Query: 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
++ LN ++ K P + + + G+ TYKE+ EEV Q+ L S
Sbjct: 54 LNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSI---TYKELLEEVCQVAQVLTYS 110
Query: 97 -GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155
G G V +Y P+ + + A + + I ++ ++ ++ + V
Sbjct: 111 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 170
Query: 156 DK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG 207
D+ + K ++ R +R ++ + + +V
Sbjct: 171 DESNRGGKVIETKRIVDDALRETPGVRHVLVYR----KTNNPSVAFHAPRDLDWATEKKK 226
Query: 208 KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267
P + ++YTSG++G PKGV + L ++ +D
Sbjct: 227 YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGA----LLTMRYTFDTHQED 282
Query: 268 VYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPR 321
V+ + + I Y G + + G + + D + E K T P
Sbjct: 283 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPT 342
Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
R L+R + + L
Sbjct: 343 AL--------------RLLKRAGDSYIENHSLK--------------------------- 361
Query: 382 GGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--G 436
LR + S G P++ EV E+ +V Y TE+ + + G
Sbjct: 362 --SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPG 419
Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESII--- 491
+A + + + P G G + V+ + +KN D ++ +
Sbjct: 420 SASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPY 478
Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
G++ TGD +G + I+ R +++ +S G ++ +E PI+ + V
Sbjct: 479 PGYYFTGDGAAKDKDGYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAECAV 533
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 165 bits (419), Expect = 4e-45
Identities = 113/512 (22%), Positives = 187/512 (36%), Gaps = 70/512 (13%)
Query: 43 TAWDIFSMSVQKYPGNRMLGWRP----FVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98
TA + ++++Y P F D + TY E +E +++ A++ G
Sbjct: 18 TAGEQLHKAMKRYAL------VPGTIAFTDAHIEVNI--TYAEYFEMSVRLAEAMKRYGL 69
Query: 99 EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK 158
R+ + N Q+ + + + P D + ++ ++ VFV K
Sbjct: 70 NTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKG 129
Query: 159 VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ 218
++++L+ ++L ++ + ++ Q+ + + + + +
Sbjct: 130 LQKILN----VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDR 185
Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
I IM +SG++G PKGV L H T S + F +++ D LS +P H
Sbjct: 186 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTAILSVVPFHHG 243
Query: 279 LDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
+ G V Y + L + K VP +F
Sbjct: 244 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFS------------- 290
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
K L L + SGGAPLS
Sbjct: 291 ---------FFAKSTLIDKYDL-----------------------SNLHEIASGGAPLSK 318
Query: 398 E-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
E E + + QGYGLTET + P+ G G V + E ++ ++
Sbjct: 319 EVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGK 377
Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
++ GE+CVRG + SGY NP+ T I DGW H+GDI + I+DR
Sbjct: 378 TLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRL 435
Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
K+LIK G VA LE++ P I D V
Sbjct: 436 KSLIKYK-GYQVAPAELESILLQHPNIFDAGV 466
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 145 bits (366), Expect = 3e-38
Identities = 85/507 (16%), Positives = 144/507 (28%), Gaps = 75/507 (14%)
Query: 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
+ T ++ + + P + T+ E+ V + + L A G P
Sbjct: 1 MQTVNEMLRRAATRAPD------HCALAVPARGLRL-THAELRARVEAVAARLHADGLRP 53
Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
RV + N V A+ A + L + L L + ++ E+ + +
Sbjct: 54 QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV 113
Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
S R+ + PYS+ +E +P
Sbjct: 114 ADAIFQSGSGARIIFLGDLVRDGE------------PYSYGP--------PIEDPQREPA 153
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
I YTSGT+G PK S V Q + +V L +PL H++
Sbjct: 154 QPAFIFYTSGTTGLPKAA---IIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG 210
Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
+
Sbjct: 211 FFAVLVAALALDGTYVVVEEFRP------------------------------------- 233
Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
+ + ++ + +A A A +K LR V GA + V
Sbjct: 234 -VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK---LDSLRHVTFAGATMPDAVL 289
Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL 460
E + V YG TE + P + V + +
Sbjct: 290 ETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVR---IVRIGGGVDEIVA 346
Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
+ + + F GY P T E + DGW+ T D+ P G V+I+ R ++I
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMII 406
Query: 521 ISQGEYVALEYLENVYCVAPIIEDPQV 547
GE + +E V AP + + V
Sbjct: 407 S-GGENIHPSEIERVLGTAPGVTEVVV 432
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 143 bits (360), Expect = 3e-37
Identities = 82/512 (16%), Positives = 161/512 (31%), Gaps = 98/512 (19%)
Query: 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
T +F V K P N + + + TY E+ + Q+ G
Sbjct: 24 TIHQLFEEQVSKRPNNVAIVCE---NEQL------TYHELNVKANQLARIFIEKGIGKDT 74
Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
VGI + A VP+ + +ILD ++ + Q V +
Sbjct: 75 LVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI 134
Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNI 222
+Q + ++E + +P + ++
Sbjct: 135 --------------------------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDL 168
Query: 223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282
++YTSGT+G+PKG +L H+ I+ + +T D F ++
Sbjct: 169 AYVIYTSGTTGNPKGTMLEHKGISNLK-----VFFENSLNVTEKDRIGQFASISFDASVW 223
Query: 283 IEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
GAS+ ++
Sbjct: 224 EMFMALLTGASLYIIL------------------------------------KDTINDFV 247
Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
+ + + ++ + + +L+ + +I+ G+ S +
Sbjct: 248 KFEQYINQKEITVITLPPTYVVHLDPERILSIQT-----------LITAGSATSPSLVNK 296
Query: 403 LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD 462
+ + YG TET T + + + + ++ V E
Sbjct: 297 WKEKVT--YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENL-QLKSV 353
Query: 463 PPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRK 515
GE+C+ G+ L GY+K P+LT + + + + TGD + L +G ++ + R
Sbjct: 354 GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 413
Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDPQV 547
N +KI G V LE +E++ I + V
Sbjct: 414 DNQVKIR-GHRVELEEVESILLKHMYISETAV 444
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 124 bits (311), Expect = 8e-31
Identities = 86/509 (16%), Positives = 158/509 (31%), Gaps = 78/509 (15%)
Query: 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
T D+ KY R + G W +Y+E+ ++ + + G +
Sbjct: 26 TFGDLLRDRAAKYGD------RIAIT--CGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76
Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
RV + N ++ E + A L + V + + + + AE + D
Sbjct: 77 RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136
Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ--PF 220
R Q K ++ I +EFL L ++ + P+
Sbjct: 137 YRSLARQVQ--------------SKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
++ + + G++G K + TH+ + + + + + L
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTV---YLAALPMAHNYPLS 239
Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
G V P
Sbjct: 240 SPGVLGVLYAGGRVVLSP---------------------------------------SPS 260
Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
F + + K+ + + + L+++ GGA S E
Sbjct: 261 PDDAFPLIEREKVTITALVPPL-----AMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315
Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSP 459
++ L Q +G+ E T E +V T G P+S Y E R+ +
Sbjct: 316 RRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRV--WDDHD-RD 372
Query: 460 LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKNL 518
+ G + RG GYYK + S + G++ TGDI ++ +G + + R K+
Sbjct: 373 VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ 432
Query: 519 IKISQGEYVALEYLENVYCVAPIIEDPQV 547
I GE VA E +EN P + D +
Sbjct: 433 INRG-GEKVAAEEVENHLLAHPAVHDAAM 460
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 594 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=5.7e-70 Score=596.96 Aligned_cols=492 Identities=16% Similarity=0.175 Sum_probs=391.2
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
.|-..++|+++++.+||++|+++. ...+++.+++||+||.+++.++|++|+++|+++||+|+|+++|++++++++||
T Consensus 71 ~N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA 147 (643)
T d1pg4a_ 71 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 147 (643)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHH
Confidence 345567888999999999999987 55667778999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHH---------Hhccc-ccccccccEEEEecCCcHHHHHHH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE---------LLSPD-CRSAQRLRVMVCFTSLTAEQKEMA 190 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~---------~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~ 190 (594)
|+++|++++|+++..+++++.+++++++++++|+++..... ....+ ......+..++.+.......
T Consensus 148 ~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~---- 223 (643)
T d1pg4a_ 148 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI---- 223 (643)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----
T ss_pred HHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccc----
Confidence 99999999999999999999999999999999998653211 11111 11234566777665542210
Q ss_pred hhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhh-hhhhhccccCCCCCCcEE
Q 007672 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY 269 (594)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 269 (594)
.........+.+..... ..........++++++|+|||||||.||||+++|++++..... ....+ ++.++|++
T Consensus 224 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~~~~d~~ 297 (643)
T d1pg4a_ 224 DWQEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIY 297 (643)
T ss_dssp CCCBTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEE
T ss_pred ccccccchhhhhhhccc-CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CCCCCCEE
Confidence 00011122334443332 2333445567899999999999999999999999997655443 33444 78899999
Q ss_pred EEecChhHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 007672 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (594)
Q Consensus 270 ~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (594)
++.+|++|.+++.. ++.+|+.|+++++++. ++..+++.|+++++|+++++|++++.|.+...
T Consensus 298 ~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~------------ 365 (643)
T d1pg4a_ 298 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD------------ 365 (643)
T ss_dssp EECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGG------------
T ss_pred EEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcc------------
Confidence 99999999999876 5668999999999753 78999999999999999999999998864311
Q ss_pred HHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc---CCceEeeecccCC
Q 007672 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CAFLVQGYGLTET 420 (594)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~---~~~i~~~yG~tE~ 420 (594)
...+..+++ +||.++++|+++++++.+++.+.+ ++.+++.||+||+
T Consensus 366 -----------------------~~~~~~dl~--------sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~ 414 (643)
T d1pg4a_ 366 -----------------------KAIEGTDRS--------SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET 414 (643)
T ss_dssp -----------------------GGTTTCCCT--------TCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred -----------------------hhccccCCC--------ceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhc
Confidence 112223344 899999999999999999998887 4779999999999
Q ss_pred CCceeccCCCC-ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cCCc
Q 007672 421 CGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGW 494 (594)
Q Consensus 421 ~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~~g~ 494 (594)
++.+....+.. ....+++|+|++|++++|+| +++..+ +.++.|||+|+| |+++.||+++++.+.+.+ .+||
T Consensus 415 g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~--~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~ 491 (643)
T d1pg4a_ 415 GGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQ--EGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM 491 (643)
T ss_dssp SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBC--CSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTS
T ss_pred cceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCCC--CCCceEEEEEecCCCcccccccCChhhchhhhcccCCCe
Confidence 98776655443 34458999999999999999 666544 455899999999 578899999998887765 5899
Q ss_pred cccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccce---
Q 007672 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGI--- 565 (594)
Q Consensus 495 ~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~--- 565 (594)
|+|||+|++|+||+|++.||.||+||+ +|++|+|.|||++|.+||+|.||+|+|++++ +++++.+.....
T Consensus 492 ~~TGDl~~~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~ 570 (643)
T d1pg4a_ 492 YFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE 570 (643)
T ss_dssp EEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred EEcCCEEEECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCHH
Confidence 999999999999999999999999996 7999999999999999999999999998774 445543221111
Q ss_pred -----e-----eeEeeee------cCceeeecccccccccccc
Q 007672 566 -----L-----EWSCWFI------PGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 566 -----~-----~~~~~~~------p~~i~~~~~gk~~r~~~~~ 592 (594)
. .+..|++ ...||+|++||++|+.+|+
T Consensus 571 ~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~ 613 (643)
T d1pg4a_ 571 LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 613 (643)
T ss_dssp HHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHH
T ss_pred HHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHH
Confidence 1 1233444 4579999999999999886
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1e-68 Score=577.78 Aligned_cols=483 Identities=24% Similarity=0.319 Sum_probs=372.8
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
++..||+++|+++|+++||++|+++. .+|+++++||+||.+++.++|++|.++|+++||+|+|+++|++++++++
T Consensus 8 ~~~~~l~~~l~~~a~~~pd~~av~~~-----~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 82 (534)
T d1v25a_ 8 DEELNLWDFLERAAALFGRKEVVSRL-----HTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAY 82 (534)
T ss_dssp CCCCCTHHHHHHHHHHSTTCEEEEEC-----TTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEe-----cCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHH
Confidence 34568999999999999999999875 3467789999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
|||+++|++++|++|.++.+++.++++.++++.++++........... .....+..++........ ...
T Consensus 83 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~ 151 (534)
T d1v25a_ 83 FAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAPE----------GYL 151 (534)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCCT----------TCE
T ss_pred HHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHh-hcccccceeEEeeccccc----------ccc
Confidence 999999999999999999999999999999999999988776654332 233455555554433210 011
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
..... ...........++++++++|||||||.||+|+++|.+++.......... .......+++++++|++|.
T Consensus 152 ~~~~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~ 224 (534)
T d1v25a_ 152 AYEEA----LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPVVPMFHV 224 (534)
T ss_dssp EHHHH----CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEECSCTTSH
T ss_pred ccccc----ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccccchhhh
Confidence 11111 0122233456788999999999999999999999999987654433222 2256788999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
+++...+..+..|+++++... ++..+...+.++++|.+.++|.++..++.........
T Consensus 225 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~-------------------- 284 (534)
T d1v25a_ 225 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR-------------------- 284 (534)
T ss_dssp HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCC--------------------
T ss_pred ccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccccc--------------------
Confidence 999988888888888887655 8999999999999999999999999987654433221
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCc----
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM---- 432 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~---- 432 (594)
+ ++||.+++||++++++..+++.+. +..+++.||+||++..+........
T Consensus 285 -----------------~--------~~lr~~~~gG~~~~~~~~~~~~~~-~~~i~~~yG~te~~~~~~~~~~~~~~~~~ 338 (534)
T d1v25a_ 285 -----------------L--------KTLRRLVVGGSAAPRSLIARFERM-GVEVRQGYGLTETSPVVVQNFVKSHLESL 338 (534)
T ss_dssp -----------------C--------SSCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred -----------------c--------cceeEEEEecCCCCHHHHHHHHHh-CCeeeeeccccccccceeecccCcccccc
Confidence 1 389999999999999999998864 9999999999999998876543321
Q ss_pred ------cccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcC
Q 007672 433 ------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP 505 (594)
Q Consensus 433 ------~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~ 505 (594)
...+++|+|++|++++|+| +++...+.+.++.|||+|+|++++.||+++++.+...| .||||+|||+|++|+
T Consensus 339 ~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~ 417 (534)
T d1v25a_ 339 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 417 (534)
T ss_dssp CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT
T ss_pred CccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECC
Confidence 2347899999999999999 88888888778999999999999999999999999998 899999999999999
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc-cccceee---------eE
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH-QKVGILE---------WS 569 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~-~~~~~~~---------~~ 569 (594)
||+|++.||.+|+|++ +|++|+|.+||++|.+||+|.||+|+|++++ +++++.. .....++ ++
T Consensus 418 ~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~l~ 496 (534)
T d1v25a_ 418 EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFA 496 (534)
T ss_dssp TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------CCC
T ss_pred CccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCCCHHHHHHHHHHhcCC
Confidence 9999999999999996 8999999999999999999999999998764 3333321 1111111 22
Q ss_pred e------eeecCceeeecccccccccccc
Q 007672 570 C------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 570 ~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
. +.+...||+|++||+.|+++||
T Consensus 497 ~~~~P~~i~~~~~lP~t~~GKi~R~~lr~ 525 (534)
T d1v25a_ 497 KWQLPDAYVFAEEIPRTSAGKFLKRALRE 525 (534)
T ss_dssp TTTSCSBC--------------CCTTHHH
T ss_pred cCCCccEEEEECCCCCCCCccccHHHHHH
Confidence 2 4445568999999999999987
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.8e-68 Score=585.18 Aligned_cols=497 Identities=17% Similarity=0.193 Sum_probs=388.8
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~-~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
.|...++|+++|+++||++|+++. +..+|..+++||+||.+++.++|++|+ ++|+++||+|+|+++|+++++++++
T Consensus 58 lN~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~l 134 (640)
T d1ry2a_ 58 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL 134 (640)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred hhHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 356789999999999999999987 656777799999999999999999997 5799999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHH--------HhcccccccccccEEEEecCCcHHHHHHHh
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE--------LLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 191 (594)
||+++|++++|+++.++++++.++++++++++++++...... .......................... .
T Consensus 135 A~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 211 (640)
T d1ry2a_ 135 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV---A 211 (640)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC---C
T ss_pred HhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccc---c
Confidence 999999999999999999999999999999999998753211 11111222233444444333221000 0
Q ss_pred hCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEE
Q 007672 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271 (594)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (594)
........+....... .......+..++++++++|||||||.||||+++|.+++.......... ..+.++|++++
T Consensus 212 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~----~~~~~~d~~l~ 286 (640)
T d1ry2a_ 212 FHAPRDLDWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT----FDTHQEDVFFT 286 (640)
T ss_dssp CCSSSEEEHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH----SCCCSSCEEEE
T ss_pred cccccccccccccccc-ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhh----cCCCcccceee
Confidence 0001111222222211 223334455788999999999999999999999999887765544322 26889999999
Q ss_pred ecChhHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 007672 272 FLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345 (594)
Q Consensus 272 ~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (594)
.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+..
T Consensus 287 ~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~--------------- 351 (640)
T d1ry2a_ 287 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAG--------------- 351 (640)
T ss_dssp CSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSC---------------
T ss_pred ccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcc---------------
Confidence 999999999875 6668999999888754 7889999999999999999999999875321
Q ss_pred HHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC---CceEeeecccCCCC
Q 007672 346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCG 422 (594)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~yG~tE~~~ 422 (594)
....+..+++ +||.+++||+++++++.+++.+.+| +.+++.||+||++.
T Consensus 352 --------------------~~~~~~~~l~--------sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~ 403 (640)
T d1ry2a_ 352 --------------------DSYIENHSLK--------SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGS 403 (640)
T ss_dssp --------------------TTSSSSCCCT--------TCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCS
T ss_pred --------------------ccccccCCCC--------ceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeeccccccc
Confidence 1111223344 8999999999999999999999885 56999999999998
Q ss_pred ceeccCCCC--ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cCCcc
Q 007672 423 PTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWF 495 (594)
Q Consensus 423 ~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~~g~~ 495 (594)
......... ....+++|.|++|++++|+| ++++....+.+..|||++++ |+++.||+++++.+.+.| .+|||
T Consensus 404 ~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~ 482 (640)
T d1ry2a_ 404 HLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYY 482 (640)
T ss_dssp CSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSE
T ss_pred ccccccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeE
Confidence 776654433 33458999999999999999 66666665666789999998 689999999999998887 45999
Q ss_pred ccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccce----
Q 007672 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGI---- 565 (594)
Q Consensus 496 ~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~---- 565 (594)
+|||+|++|+||+|++.||.||+|++ +|++|+|.|||++|.+||+|.||+|+|++++ +++++.+.....
T Consensus 483 ~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~ 561 (640)
T d1ry2a_ 483 FTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTAT 561 (640)
T ss_dssp EEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC---------
T ss_pred EcCCceeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccc
Confidence 99999999999999999999999996 8999999999999999999999999999875 344443221110
Q ss_pred ----------------eeeEe------eeecCceeeeccccccccccccC
Q 007672 566 ----------------LEWSC------WFIPGTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 566 ----------------~~~~~------~~~p~~i~~~~~gk~~r~~~~~~ 593 (594)
..+.. +...+.||+|++||++|+.+|+.
T Consensus 562 ~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~ 611 (640)
T d1ry2a_ 562 DDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKI 611 (640)
T ss_dssp ---CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHH
Confidence 01122 44445789999999999999864
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=1.2e-66 Score=562.30 Aligned_cols=490 Identities=24% Similarity=0.282 Sum_probs=377.0
Q ss_pred CCCCCCcCcHHHHHHHHHHcC---CCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 007672 35 PSVDSDLNTAWDIFSMSVQKY---PGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111 (594)
Q Consensus 35 ~~~~~~~~tl~~~l~~~a~~~---pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~ 111 (594)
|-.|-...++.+.|.++++++ |+.+|+++. +. + +++||+||.+++.++|++|+++|+++||+|+|+++|+
T Consensus 10 p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~---~~--~--~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns 82 (541)
T d1lcia_ 10 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDA---HI--E--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS 82 (541)
T ss_dssp CSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC
T ss_pred CCCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeC---CC--C--eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCC
Confidence 333444578999999999887 666676643 22 2 6799999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHh
Q 007672 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (594)
Q Consensus 112 ~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 191 (594)
++++++++||+++|++++|+++.++.+++.++|+.++++++|++++..+.+.+.. ..++..+.+++++....
T Consensus 83 ~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 154 (541)
T d1lcia_ 83 LQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD------- 154 (541)
T ss_dssp SSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC-------
T ss_pred HHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhcc-ccccccceeeeecCCcc-------
Confidence 9999999999999999999999999999999999999999999998877664433 34567777777665422
Q ss_pred hCCcceeeHHHHHhcccc------cccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCC
Q 007672 192 QTGIKPYSWDEFLHLGKV------NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV 265 (594)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~ 265 (594)
......+..+...... ...+.....++++++++|||||||.||+|+++|++++.........+ .......
T Consensus 155 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~--~~~~~~~ 230 (541)
T d1lcia_ 155 --YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIP 230 (541)
T ss_dssp --BTTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCT
T ss_pred --ccccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhc--ccccccc
Confidence 1122333333332211 11223344678999999999999999999999999988766655433 1225678
Q ss_pred CcEEEEecChhHHHHHHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 007672 266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344 (594)
Q Consensus 266 ~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (594)
.+++++++|++|.++....+..+..++.++.... +....+..+..+++|.++.+|.++..+.....
T Consensus 231 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~------------- 297 (541)
T d1lcia_ 231 DTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL------------- 297 (541)
T ss_dssp TCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSC-------------
T ss_pred cccccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCcccccccccccc-------------
Confidence 8999999999999999888888888888777666 89999999999999999999999988764211
Q ss_pred HHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCC-ceEeeecccCCCCc
Q 007672 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGP 423 (594)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~-~i~~~yG~tE~~~~ 423 (594)
....++ +++|.+++||+++++.+.+++.+.++. .++++||+||+++.
T Consensus 298 ------------------------~~~~~~--------~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~ 345 (541)
T d1lcia_ 298 ------------------------IDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 345 (541)
T ss_dssp ------------------------GGGSCC--------TTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSC
T ss_pred ------------------------cccccc--------ccceEEEecccccccccccccccccCCceeeecCCccccCce
Confidence 111122 289999999999999999999988865 58999999999998
Q ss_pred eeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEE
Q 007672 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502 (594)
Q Consensus 424 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~ 502 (594)
++........ .+++|+|+|+++++|+|.+++ .+++.|+.|||+|+|++++.||+++++.+...+ .+|||+|||+|+
T Consensus 346 ~~~~~~~~~~-~~svG~p~~~~~~~i~d~d~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~ 422 (541)
T d1lcia_ 346 ILITPEGDDK-PGAVGKVVPFFEAKVVDLDTG--KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY 422 (541)
T ss_dssp SEECCCC----CCCCBEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEE
T ss_pred EEecCcccCC-CCccccccCCCEEEEEECCCC--cCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeE
Confidence 8877665544 489999999999999994334 344566899999999999999999999888888 789999999999
Q ss_pred EcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccc--ccccceeee------
Q 007672 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRR--HQKVGILEW------ 568 (594)
Q Consensus 503 ~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~--~~~~~~~~~------ 568 (594)
+|+||++++.||.+|+|++ +|++|+|.+||++|.+||+|.||+|++++++ +++++. ....+..++
T Consensus 423 ~~~~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~ 501 (541)
T d1lcia_ 423 WDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVAS 501 (541)
T ss_dssp ECTTCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred EcCCeEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHH
Confidence 9999999999999999997 7999999999999999999999999998764 344432 222222222
Q ss_pred --------E-eeeecCceeeecccccccccccc
Q 007672 569 --------S-CWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 569 --------~-~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+ .+...+.||+|++||++|+++||
T Consensus 502 ~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~ 534 (541)
T d1lcia_ 502 QVTTAKKLRGGVVFVDEVPKGLTGKLDARKIRE 534 (541)
T ss_dssp HSCGGGSCTTEEEEESSCCC-----CCHHHHHH
T ss_pred hCCccccCCcEEEEeCCCCcCCCcCccHHHHHH
Confidence 1 13334569999999999999986
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1e-64 Score=543.83 Aligned_cols=458 Identities=19% Similarity=0.234 Sum_probs=376.6
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
++..||.++|+++|+++||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|++++++++
T Consensus 20 ~~~~tl~~l~~~~a~~~Pd~~Al~~~---~------~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~ 90 (514)
T d1amua_ 20 PRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 90 (514)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHH
Confidence 47799999999999999999999975 3 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+||+++|++++|+++.++.+++.++++.++++++|++......+..... .. ........
T Consensus 91 la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~----~~-~~~~~~~~---------------- 149 (514)
T d1amua_ 91 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF----NG-QVEIFEED---------------- 149 (514)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC----CS-EEEECCCS----------------
T ss_pred HHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcc----cc-cccccccc----------------
Confidence 9999999999999999999999999999999999999887766543221 11 11111111
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
............+..++++++++|||||||.||+|++||.++..........+ .....+++++.+|++|.
T Consensus 150 -----~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 219 (514)
T d1amua_ 150 -----TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFD 219 (514)
T ss_dssp -----TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTST
T ss_pred -----cccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceeccccc
Confidence 00111122233445788999999999999999999999999999999988777 88999999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
+++...+.++..|+++++... +....++.+..+.++.+..+|.......
T Consensus 220 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 272 (514)
T d1amua_ 220 ASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD--------------------------- 272 (514)
T ss_dssp HHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSC---------------------------
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccccc---------------------------
Confidence 999988888999999888654 6778889999999999999987654321
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCc--
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-- 432 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~-- 432 (594)
..++ .+++.++++|+++++++.+++.+ ++.+++.||+||++.+++.......
T Consensus 273 ----------------~~~~--------~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~ 326 (514)
T d1amua_ 273 ----------------PERI--------LSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETI 326 (514)
T ss_dssp ----------------TTTC--------CSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCC
T ss_pred ----------------cccc--------ccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeecccccccc
Confidence 0111 38999999999999999887765 7889999999999998776554432
Q ss_pred cccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-------cCCccccCceEEEcC
Q 007672 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-------IDGWFHTGDIGQILP 505 (594)
Q Consensus 433 ~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-------~~g~~~TGDlg~~~~ 505 (594)
......|.+.++..+.+.| +++...+ .|+.|||+|+||.++.||++++..+.+.| .+|||+|||+|++|+
T Consensus 327 ~~~~~~~~~~~~~~v~~~d-~~~~~~~--~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~ 403 (514)
T d1amua_ 327 GHSVPIGAPIQNTQIYIVD-ENLQLKS--VGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS 403 (514)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSCBCC--TTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT
T ss_pred CcccccccceeeeeEeeec-ccceecC--CCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECC
Confidence 2336788899999999999 6665555 45899999999999999999999988877 267999999999999
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccceeee--------Ee-
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGILEW--------SC- 570 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~~~~--------~~- 570 (594)
||+|++.||.+|+|++ +|++|+|.+||++|.+||+|.||+|++.+++ ++++..+..+++.++ ..
T Consensus 404 ~G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~~~~~l~~~~~~~l~~~ 482 (514)
T d1amua_ 404 DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTY 482 (514)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHHSCGG
T ss_pred CCcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCCCHHHHHHHHHhhCCcc
Confidence 9999999999999996 7999999999999999999999999998774 445555544444433 22
Q ss_pred -----eeecCceeeeccccccccccccC
Q 007672 571 -----WFIPGTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 571 -----~~~p~~i~~~~~gk~~r~~~~~~ 593 (594)
+.....||+|++||++|++|||.
T Consensus 483 ~~p~~i~~v~~lP~t~~GKi~R~~L~~~ 510 (514)
T d1amua_ 483 MIPSYFIQLDKMPLTSNGKIDRKQLPEP 510 (514)
T ss_dssp GSCSEEEECSSCCBCTTSSBCGGGSCCC
T ss_pred cCceEEEEeCCCCCCCCcChhHHhcCCC
Confidence 45556799999999999999984
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.2e-61 Score=522.43 Aligned_cols=473 Identities=17% Similarity=0.160 Sum_probs=379.0
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
.||.++|+++|+++||++|+++. + +++||+||.+++.++|++|++.|+++||+|+|+++|+++++++++||
T Consensus 25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~ 95 (536)
T d1mdba_ 25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL 95 (536)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence 68999999999999999999975 4 58999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhc----ccccccccccEEEEecCCcHHHHHHHhhCCcce
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS----PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 197 (594)
+++|++++|++|..+.+++.++++.++++++++++........ ............+....... .
T Consensus 96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 163 (536)
T d1mdba_ 96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------F 163 (536)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------S
T ss_pred HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecccc------------c
Confidence 9999999999999999999999999999999998643321110 00111122222222222111 1
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhH
Q 007672 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (594)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 277 (594)
..++++. .......+..++|+++++|||||||.||+|++||++++..+..+...+ .+..++++++..|++|
T Consensus 164 ~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~ 234 (536)
T d1mdba_ 164 LPLEDLH----TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH 234 (536)
T ss_dssp EEGGGCC----CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred cchhhcc----cCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----cccccccccccccccc
Confidence 1222111 222334456789999999999999999999999999999999988887 8899999999999999
Q ss_pred HHHHHH--HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 278 ILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 278 ~~~~~~--~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
.+++.. ....+..|.+++..+. ++..++..+++++++.+..+|..+..+..........
T Consensus 235 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 296 (536)
T d1mdba_ 235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD------------------ 296 (536)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC------------------
T ss_pred ccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccc------------------
Confidence 999864 3334555677776665 9999999999999999999999988876543222111
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccc
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 434 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~ 434 (594)
.++++.+++||+++++.+.+++.+.++......|+.+|.+.............
T Consensus 297 ---------------------------~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (536)
T d1mdba_ 297 ---------------------------LSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII 349 (536)
T ss_dssp ---------------------------CTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred ---------------------------cCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccc
Confidence 13899999999999999999999999999999999999887776666555555
Q ss_pred cCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEEEe
Q 007672 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID 513 (594)
Q Consensus 435 ~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~G 513 (594)
.+++|.|+++....+++.+++. +++.++.|||+++|+.++.||++++..+...+ .+|||+|||+|++|+||+|++.|
T Consensus 350 ~~~~g~p~~~~~~~~v~~~~g~--~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~G 427 (536)
T d1mdba_ 350 VNTQGKPMSPYDESRVWDDHDR--DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEG 427 (536)
T ss_dssp HHCCCEESSTTCEEEEECTTSC--BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred cCCcccCCCCcceEEEEcCCCC--eecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCC
Confidence 5889999876666655525444 44556899999999999999999999998888 78999999999999999999999
Q ss_pred ccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc-ccee---------eeEe------e
Q 007672 514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK-VGIL---------EWSC------W 571 (594)
Q Consensus 514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~-~~~~---------~~~~------~ 571 (594)
|.||+|++ +|++|+|.+||++|.+||+|.||+|+|.+++ +++++..+. .... .++. +
T Consensus 428 R~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~~l~~~~~P~~i 506 (536)
T d1mdba_ 428 RAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRV 506 (536)
T ss_dssp EGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCCGGGSCSEE
T ss_pred CcceEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCCCHHHHHHHHHhcCCCcCcCccEE
Confidence 99999996 7999999999999999999999999998763 444433221 1111 1223 4
Q ss_pred eecCceeeecccccccccccc
Q 007672 572 FIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 572 ~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.....||+|++||+.|++++|
T Consensus 507 ~~v~~lP~t~~GKi~r~~L~~ 527 (536)
T d1mdba_ 507 EFVESFPQTGVGKVSKKALRE 527 (536)
T ss_dssp EECSSCCBCTTSCBCHHHHHH
T ss_pred EEECCCCcCCCcCccHHHHHH
Confidence 445578999999999999876
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=6.2e-59 Score=496.39 Aligned_cols=470 Identities=20% Similarity=0.217 Sum_probs=367.8
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
++||.++|+++|+++||++|+++. ++. +++||+||.+++.++|++|+++|+++||+|+|+++|++++++++||
T Consensus 1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 73 (503)
T d3cw9a1 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (503)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 579999999999999999999986 432 7899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|++|.++++++.+++++++++++|++........ .... .....++.+
T Consensus 74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~--~~~~-~~~~~~i~~--------------------- 129 (503)
T d3cw9a1 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA--IFQS-GSGARIIFL--------------------- 129 (503)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHH--HHHT-TCCCEEEEH---------------------
T ss_pred HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHH--Hhhh-ccccccccc---------------------
Confidence 9999999999999999999999999999999999876432211 1111 122223322
Q ss_pred HHHHhccc----ccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChh
Q 007672 201 DEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (594)
Q Consensus 201 ~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 276 (594)
.++..... ..........++++++++|||||||.||+|+++|.++.+.+......+ .......++++..+|++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~ 206 (503)
T d3cw9a1 130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY 206 (503)
T ss_dssp HHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred hhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence 22221111 122233455788999999999999999999999999999988776544 12456778999999999
Q ss_pred HHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 277 ~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
|..+... .+.+...++.+++... ++..+...+..++++.+..+|..+..+..........
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 268 (503)
T d3cw9a1 207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS------------------ 268 (503)
T ss_dssp SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTT------------------
T ss_pred cccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccc------------------
Confidence 8888775 5556677777777665 9999999999999999999999988876533222111
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccc
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 434 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~ 434 (594)
.++ ++||.+++||+++++++...+...++..+.+.||++|++..+..........
T Consensus 269 -----------------~~~--------~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~ 323 (503)
T d3cw9a1 269 -----------------LKL--------DSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE 323 (503)
T ss_dssp -----------------CCC--------TTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE
T ss_pred -----------------ccc--------cceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc
Confidence 111 3899999999999999999999999999999999999988777766554333
Q ss_pred cCccccCccCceEEeeecCCCCCCCCCCCCCceEEEcc-CCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEe
Q 007672 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513 (594)
Q Consensus 435 ~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g-~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~G 513 (594)
...+.+.+.....+.+ ..+. .++.|+.|++.+.+ +....+|+++++.+.+.|.||||+|||+|++|+||+|++.|
T Consensus 324 -~~~~~~~~~~~~~~~~-~~~~--~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~G 399 (503)
T d3cw9a1 324 -MAPGFFSEVRIVRIGG-GVDE--IVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILG 399 (503)
T ss_dssp -EBCCTTCCEEEECTTS-CTTC--BCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEE
T ss_pred -ccccccccceeeeeec-ccCc--ccCCCccccccccccccccccccCChhhhHHHhcCCceecccccccccCCeEEeCC
Confidence 3344444444444444 3333 33455888876665 56677899999999999999999999999999999999999
Q ss_pred ccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc--ccccee---------eeEe------
Q 007672 514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH--QKVGIL---------EWSC------ 570 (594)
Q Consensus 514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~--~~~~~~---------~~~~------ 570 (594)
|.||+|++ +|++|+|.+||++|.+||+|.||+|+|.+++ +++++.+ ...+.. .++.
T Consensus 400 R~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~ 478 (503)
T d3cw9a1 400 RVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKR 478 (503)
T ss_dssp ESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHSSSCGGGSCSE
T ss_pred CcCCeEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCCccE
Confidence 99999997 7999999999999999999999999998764 3444332 122111 1233
Q ss_pred eeecCceeeecccccccccccc
Q 007672 571 WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 571 ~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+.....||+|++||++|++|||
T Consensus 479 i~~v~~~P~t~~GKi~R~~L~~ 500 (503)
T d3cw9a1 479 YFILDQLPKNALNKVLRRQLVQ 500 (503)
T ss_dssp EEECSCCCBCTTSCBCHHHHHH
T ss_pred EEEECCCCcCCCcCccHHHHHH
Confidence 3444579999999999999876
|