Citrus Sinensis ID: 007710
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 592 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SGE9 | 598 | Probable phenylalanine--t | yes | no | 0.998 | 0.988 | 0.746 | 0.0 | |
| Q9VCA5 | 589 | Probable phenylalanine--t | yes | no | 0.988 | 0.993 | 0.520 | 0.0 | |
| Q9NSD9 | 589 | Phenylalanine--tRNA ligas | yes | no | 0.986 | 0.991 | 0.509 | 1e-174 | |
| Q5R7F7 | 589 | Phenylalanine--tRNA ligas | yes | no | 0.986 | 0.991 | 0.505 | 1e-172 | |
| Q9WUA2 | 589 | Phenylalanine--tRNA ligas | yes | no | 0.986 | 0.991 | 0.509 | 1e-172 | |
| Q19713 | 591 | Phenylalanine--tRNA ligas | yes | no | 0.988 | 0.989 | 0.501 | 1e-169 | |
| Q550D2 | 617 | Phenylalanine--tRNA ligas | yes | no | 0.979 | 0.940 | 0.472 | 1e-159 | |
| O13432 | 592 | Phenylalanine--tRNA ligas | N/A | no | 0.972 | 0.972 | 0.472 | 1e-154 | |
| O42849 | 589 | Phenylalanine--tRNA ligas | yes | no | 0.962 | 0.967 | 0.461 | 1e-151 | |
| P15624 | 595 | Phenylalanine--tRNA ligas | yes | no | 0.967 | 0.963 | 0.444 | 1e-148 |
| >sp|Q9SGE9|SYFB_ARATH Probable phenylalanine--tRNA ligase beta subunit OS=Arabidopsis thaliana GN=At1g72550 PE=2 SV=1 | Back alignment and function desciption |
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Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/599 (74%), Positives = 522/599 (87%), Gaps = 8/599 (1%)
Query: 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
MPT+SVGRDRLFAALG+SYT+E+FE+LCF FGIELDDVTTEKAIIRKEKH+DEE D++ E
Sbjct: 1 MPTISVGRDRLFAALGESYTQEKFEELCFSFGIELDDVTTEKAIIRKEKHIDEEADDD-E 59
Query: 61 EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIR 120
E+IYKIE+PANR DLLCLEG+AQ+LRVF ++QEIP YTL+D+SKD +LQM+VKPETS IR
Sbjct: 60 EIIYKIEIPANRPDLLCLEGLAQSLRVFIEKQEIPTYTLADISKDKILQMNVKPETSKIR 119
Query: 121 PYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPP 180
P+VVCAVLR ++FDEA YNSFIDLQDKLHQNICRRR+LVAIGTHDLDTLQGPFTYEALPP
Sbjct: 120 PFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRSLVAIGTHDLDTLQGPFTYEALPP 179
Query: 181 SHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240
+ INFVPLKQT+ F ADEL+EFYKSD+KLKK+LHIIENSP++PVLYD RTVLSLPPIIN
Sbjct: 180 TDINFVPLKQTKSFRADELIEFYKSDMKLKKFLHIIENSPVFPVLYDSKRTVLSLPPIIN 239
Query: 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYV 300
GAHSAITL+TKNVFIECTATDLTKAKIVLNTMVT FSE+C RK+++EPVEV Y DG+SY+
Sbjct: 240 GAHSAITLQTKNVFIECTATDLTKAKIVLNTMVTTFSEFCARKFEIEPVEVTYDDGKSYI 299
Query: 301 YPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTR 360
YPDL+ Y+MEV LS+I +IGVSL+ E+VTSLL RMQL AE++ S +NQ I V VPP+R
Sbjct: 300 YPDLAVYDMEVPLSFITDSIGVSLKVEQVTSLLTRMQLQAEQAKSSDNQCAIKVHVPPSR 359
Query: 361 SDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILC 420
SDVLHPCDVMEDVAIAYG+NNIP RKPAS+KPL LNE +DL+R+EIAM +TEV+TW+LC
Sbjct: 360 SDVLHPCDVMEDVAIAYGFNNIPTRKPASIKPLTLNELTDLLRIEIAMCVYTEVVTWLLC 419
Query: 421 SSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGD 480
S KE MLNR+ S +VGNPR++DFE +R LMPG+LKT+GHN +PKPIKI+E+ D
Sbjct: 420 SHKENFAMLNREDVNSAVIVGNPRSADFEAMRRALMPGLLKTVGHNNKYPKPIKIFEISD 479
Query: 481 VVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPF-------VPVGDD 533
VV+LDE KDVGAS RR LAALYCGA SGFELIH LVDRIMEV+ PF VP+ +
Sbjct: 480 VVMLDESKDVGASNRRHLAALYCGATSGFELIHGLVDRIMEVMAIPFLTIHENNVPINEK 539
Query: 534 TGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592
GYY++ S EPEFLPGRQASI +GKH+G FGIVHPEVLNNFDI DPCS++E+DIE L
Sbjct: 540 DGYYVKLSQEPEFLPGRQASIIVRGKHIGNFGIVHPEVLNNFDIPDPCSYLELDIEAIL 598
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Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0 |
| >sp|Q9VCA5|SYFB_DROME Probable phenylalanine--tRNA ligase beta subunit OS=Drosophila melanogaster GN=CG5706 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9NSD9|SYFB_HUMAN Phenylalanine--tRNA ligase beta subunit OS=Homo sapiens GN=FARSB PE=1 SV=3 | Back alignment and function description |
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| >sp|Q5R7F7|SYFB_PONAB Phenylalanine--tRNA ligase beta subunit OS=Pongo abelii GN=FARSB PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9WUA2|SYFB_MOUSE Phenylalanine--tRNA ligase beta subunit OS=Mus musculus GN=Farsb PE=2 SV=2 | Back alignment and function description |
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| >sp|Q19713|SYFB_CAEEL Phenylalanine--tRNA ligase beta subunit OS=Caenorhabditis elegans GN=frs-2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q550D2|SYFB_DICDI Phenylalanine--tRNA ligase beta subunit OS=Dictyostelium discoideum GN=phesB PE=3 SV=2 | Back alignment and function description |
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| >sp|O13432|SYFB_CANAX Phenylalanine--tRNA ligase beta subunit OS=Candida albicans GN=FRS1 PE=2 SV=3 | Back alignment and function description |
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| >sp|O42849|SYFB_SCHPO Phenylalanine--tRNA ligase beta subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=frs1 PE=3 SV=1 | Back alignment and function description |
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| >sp|P15624|SYFB_YEAST Phenylalanine--tRNA ligase beta subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FRS1 PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 592 | ||||||
| 224122624 | 595 | predicted protein [Populus trichocarpa] | 1.0 | 0.994 | 0.8 | 0.0 | |
| 255564405 | 593 | phenylalanyl-tRNA synthetase beta chain, | 1.0 | 0.998 | 0.790 | 0.0 | |
| 224123942 | 598 | predicted protein [Populus trichocarpa] | 1.0 | 0.989 | 0.794 | 0.0 | |
| 225455762 | 592 | PREDICTED: probable phenylalanyl-tRNA sy | 0.998 | 0.998 | 0.792 | 0.0 | |
| 449440866 | 591 | PREDICTED: probable phenylalanine--tRNA | 0.996 | 0.998 | 0.785 | 0.0 | |
| 297842003 | 591 | hypothetical protein ARALYDRAFT_476389 [ | 0.998 | 1.0 | 0.775 | 0.0 | |
| 357477759 | 613 | hypothetical protein MTR_4g112680 [Medic | 0.996 | 0.962 | 0.757 | 0.0 | |
| 356511581 | 603 | PREDICTED: probable phenylalanyl-tRNA sy | 1.0 | 0.981 | 0.762 | 0.0 | |
| 356562670 | 603 | PREDICTED: probable phenylalanyl-tRNA sy | 1.0 | 0.981 | 0.764 | 0.0 | |
| 15218527 | 598 | phenylalanyl-tRNA synthetase beta chain | 0.998 | 0.988 | 0.746 | 0.0 |
| >gi|224122624|ref|XP_002330528.1| predicted protein [Populus trichocarpa] gi|222872462|gb|EEF09593.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/595 (80%), Positives = 541/595 (90%), Gaps = 3/595 (0%)
Query: 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
MPTVSVGRDRLFAALGKSYT+EEFEDLCF FGIELDDVTTEKAIIRKE+HLDEE +E +
Sbjct: 1 MPTVSVGRDRLFAALGKSYTQEEFEDLCFKFGIELDDVTTEKAIIRKERHLDEEDEEVGD 60
Query: 61 E--VIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSS 118
+ +IYKIEVPANRYDLLCLEGIAQALR+FN++++ P YTL+++++DSML+MHV+PETS
Sbjct: 61 DEEIIYKIEVPANRYDLLCLEGIAQALRIFNEEEQTPTYTLANITQDSMLKMHVQPETSL 120
Query: 119 IRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEAL 178
IRP+VVCAVLRDI+FDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEAL
Sbjct: 121 IRPFVVCAVLRDITFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEAL 180
Query: 179 PPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPI 238
P +INFVPLKQ ++F ADELMEFYKSD+KLKK+LHIIENSP+YP++YD RTVLSLPPI
Sbjct: 181 HPENINFVPLKQEKNFRADELMEFYKSDMKLKKFLHIIENSPVYPIIYDSKRTVLSLPPI 240
Query: 239 INGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRS 298
INGAHSAITLKTKNVFIECTATDLTKA IVLNTMVT FS YC+RK++VEPV+V+Y+DG+S
Sbjct: 241 INGAHSAITLKTKNVFIECTATDLTKASIVLNTMVTTFSAYCQRKFEVEPVKVIYSDGKS 300
Query: 299 YVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPP 358
YVYPDLS YNMEV LSYI +IGVSL AE+VTSLLNRMQL AE S +N+ NINVL+PP
Sbjct: 301 YVYPDLSVYNMEVPLSYITGSIGVSLAAEKVTSLLNRMQLRAEHSVFDDNKCNINVLIPP 360
Query: 359 TRSDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWI 418
TRSDVLHPCDVMEDVAIAYGYN+IPKR+ S+KPL LN+ DL+R EIAMNGFTEVLTWI
Sbjct: 361 TRSDVLHPCDVMEDVAIAYGYNDIPKRRLPSMKPLPLNQLEDLIRAEIAMNGFTEVLTWI 420
Query: 419 LCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYE 477
LCS +E LNR+ D+S+AV +GNPR+SDFEVVRT+LMPG LK IGHNKDHPKPIKI+E
Sbjct: 421 LCSYRENFASLNREDDQSSAVIIGNPRSSDFEVVRTSLMPGALKIIGHNKDHPKPIKIFE 480
Query: 478 VGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYY 537
VGD+ LLDE KDVGA+ RR LAALYCG NSGFELIH LVDRIMEV+GTPFVP+GD+TGYY
Sbjct: 481 VGDIALLDESKDVGATNRRHLAALYCGTNSGFELIHSLVDRIMEVMGTPFVPIGDNTGYY 540
Query: 538 IQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592
I+RS+EPEFLPGRQASI +KGKH G FGIVHP+VLNNF I+DPCSF+EIDIE+FL
Sbjct: 541 IERSNEPEFLPGRQASIIYKGKHFGNFGIVHPQVLNNFVITDPCSFLEIDIEHFL 595
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564405|ref|XP_002523199.1| phenylalanyl-tRNA synthetase beta chain, putative [Ricinus communis] gi|223537606|gb|EEF39230.1| phenylalanyl-tRNA synthetase beta chain, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224123942|ref|XP_002319202.1| predicted protein [Populus trichocarpa] gi|222857578|gb|EEE95125.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225455762|ref|XP_002269751.1| PREDICTED: probable phenylalanyl-tRNA synthetase beta chain [Vitis vinifera] gi|297734128|emb|CBI15375.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449440866|ref|XP_004138205.1| PREDICTED: probable phenylalanine--tRNA ligase beta subunit-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297842003|ref|XP_002888883.1| hypothetical protein ARALYDRAFT_476389 [Arabidopsis lyrata subsp. lyrata] gi|297334724|gb|EFH65142.1| hypothetical protein ARALYDRAFT_476389 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|357477759|ref|XP_003609165.1| hypothetical protein MTR_4g112680 [Medicago truncatula] gi|355510220|gb|AES91362.1| hypothetical protein MTR_4g112680 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356511581|ref|XP_003524503.1| PREDICTED: probable phenylalanyl-tRNA synthetase beta chain-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356562670|ref|XP_003549592.1| PREDICTED: probable phenylalanyl-tRNA synthetase beta chain-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|15218527|ref|NP_177399.1| phenylalanyl-tRNA synthetase beta chain [Arabidopsis thaliana] gi|12644590|sp|Q9SGE9.1|SYFB_ARATH RecName: Full=Probable phenylalanine--tRNA ligase beta subunit; AltName: Full=Phenylalanyl-tRNA synthetase beta subunit; Short=PheRS gi|12323785|gb|AAG51865.1|AC010926_28 putative phenylalanyl-tRNA synthetase beta-subunit; PheHB; 86609-90570 [Arabidopsis thaliana] gi|17065262|gb|AAL32785.1| putative phenylalanyl-tRNA synthetase beta-subunit; PheHB [Arabidopsis thaliana] gi|22136234|gb|AAM91195.1| putative phenylalanyl-tRNA synthetase beta-subunit; PheHB [Arabidopsis thaliana] gi|332197217|gb|AEE35338.1| phenylalanyl-tRNA synthetase beta chain [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 592 | ||||||
| TAIR|locus:2030290 | 598 | AT1G72550 [Arabidopsis thalian | 0.998 | 0.988 | 0.747 | 2.2e-247 | |
| FB|FBgn0039175 | 589 | CG5706 [Drosophila melanogaste | 0.986 | 0.991 | 0.524 | 5.2e-168 | |
| ZFIN|ZDB-GENE-021206-2 | 590 | farsb "phenylalanyl-tRNA synth | 0.986 | 0.989 | 0.533 | 5.2e-168 | |
| UNIPROTKB|Q5ZJ61 | 589 | FARSB "Uncharacterized protein | 0.986 | 0.991 | 0.514 | 2.2e-162 | |
| UNIPROTKB|F6XQ20 | 589 | FARSB "Uncharacterized protein | 0.984 | 0.989 | 0.513 | 1.5e-161 | |
| UNIPROTKB|Q9NSD9 | 589 | FARSB "Phenylalanine--tRNA lig | 0.984 | 0.989 | 0.513 | 4.6e-160 | |
| UNIPROTKB|A8E4P2 | 589 | FARSB "Uncharacterized protein | 0.986 | 0.991 | 0.510 | 9.6e-160 | |
| RGD|1303210 | 589 | Farsb "phenylalanyl-tRNA synth | 0.984 | 0.989 | 0.511 | 1.3e-157 | |
| MGI|MGI:1346035 | 589 | Farsb "phenylalanyl-tRNA synth | 0.984 | 0.989 | 0.511 | 7e-157 | |
| WB|WBGene00001498 | 591 | fars-3 [Caenorhabditis elegans | 0.986 | 0.988 | 0.505 | 1.2e-154 |
| TAIR|locus:2030290 AT1G72550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2383 (843.9 bits), Expect = 2.2e-247, P = 2.2e-247
Identities = 448/599 (74%), Positives = 522/599 (87%)
Query: 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
MPT+SVGRDRLFAALG+SYT+E+FE+LCF FGIELDDVTTEKAIIRKEKH+DEE D+ DE
Sbjct: 1 MPTISVGRDRLFAALGESYTQEKFEELCFSFGIELDDVTTEKAIIRKEKHIDEEADD-DE 59
Query: 61 EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIR 120
E+IYKIE+PANR DLLCLEG+AQ+LRVF ++QEIP YTL+D+SKD +LQM+VKPETS IR
Sbjct: 60 EIIYKIEIPANRPDLLCLEGLAQSLRVFIEKQEIPTYTLADISKDKILQMNVKPETSKIR 119
Query: 121 PYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPP 180
P+VVCAVLR ++FDEA YNSFIDLQDKLHQNICRRR+LVAIGTHDLDTLQGPFTYEALPP
Sbjct: 120 PFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRSLVAIGTHDLDTLQGPFTYEALPP 179
Query: 181 SHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240
+ INFVPLKQT+ F ADEL+EFYKSD+KLKK+LHIIENSP++PVLYD RTVLSLPPIIN
Sbjct: 180 TDINFVPLKQTKSFRADELIEFYKSDMKLKKFLHIIENSPVFPVLYDSKRTVLSLPPIIN 239
Query: 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYV 300
GAHSAITL+TKNVFIECTATDLTKAKIVLNTMVT FSE+C RK+++EPVEV Y DG+SY+
Sbjct: 240 GAHSAITLQTKNVFIECTATDLTKAKIVLNTMVTTFSEFCARKFEIEPVEVTYDDGKSYI 299
Query: 301 YPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTR 360
YPDL+ Y+MEV LS+I +IGVSL+ E+VTSLL RMQL AE++ S +NQ I V VPP+R
Sbjct: 300 YPDLAVYDMEVPLSFITDSIGVSLKVEQVTSLLTRMQLQAEQAKSSDNQCAIKVHVPPSR 359
Query: 361 SDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILC 420
SDVLHPCDVMEDVAIAYG+NNIP RKPAS+KPL LNE +DL+R+EIAM +TEV+TW+LC
Sbjct: 360 SDVLHPCDVMEDVAIAYGFNNIPTRKPASIKPLTLNELTDLLRIEIAMCVYTEVVTWLLC 419
Query: 421 SSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGD 480
S KE MLNR+ S +VGNPR++DFE +R LMPG+LKT+GHN +PKPIKI+E+ D
Sbjct: 420 SHKENFAMLNREDVNSAVIVGNPRSADFEAMRRALMPGLLKTVGHNNKYPKPIKIFEISD 479
Query: 481 VVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPF-------VPVGDD 533
VV+LDE KDVGAS RR LAALYCGA SGFELIH LVDRIMEV+ PF VP+ +
Sbjct: 480 VVMLDESKDVGASNRRHLAALYCGATSGFELIHGLVDRIMEVMAIPFLTIHENNVPINEK 539
Query: 534 TGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592
GYY++ S EPEFLPGRQASI +GKH+G FGIVHPEVLNNFDI DPCS++E+DIE L
Sbjct: 540 DGYYVKLSQEPEFLPGRQASIIVRGKHIGNFGIVHPEVLNNFDIPDPCSYLELDIEAIL 598
|
|
| FB|FBgn0039175 CG5706 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-021206-2 farsb "phenylalanyl-tRNA synthetase, beta subunit" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5ZJ61 FARSB "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F6XQ20 FARSB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9NSD9 FARSB "Phenylalanine--tRNA ligase beta subunit" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A8E4P2 FARSB "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| RGD|1303210 Farsb "phenylalanyl-tRNA synthetase, beta subunit" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1346035 Farsb "phenylalanyl-tRNA synthetase, beta subunit" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| WB|WBGene00001498 fars-3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B6YTJ3 | SYFB_THEON | 6, ., 1, ., 1, ., 2, 0 | 0.3084 | 0.9189 | 0.9510 | yes | no |
| Q8U260 | SYFB_PYRFU | 6, ., 1, ., 1, ., 2, 0 | 0.3209 | 0.9172 | 0.9766 | yes | no |
| B1L7C0 | SYFB_KORCO | 6, ., 1, ., 1, ., 2, 0 | 0.3188 | 0.9087 | 0.9676 | yes | no |
| O73984 | SYFB_PYRHO | 6, ., 1, ., 1, ., 2, 0 | 0.3125 | 0.9155 | 0.9748 | yes | no |
| Q468N7 | SYFB_METBF | 6, ., 1, ., 1, ., 2, 0 | 0.3214 | 0.8766 | 0.9540 | yes | no |
| A7I615 | SYFB_METB6 | 6, ., 1, ., 1, ., 2, 0 | 0.3171 | 0.8378 | 0.9151 | yes | no |
| A4FWS3 | SYFB_METM5 | 6, ., 1, ., 1, ., 2, 0 | 0.3133 | 0.8141 | 0.8700 | yes | no |
| Q8PTA5 | SYFB_METMA | 6, ., 1, ., 1, ., 2, 0 | 0.3017 | 0.8766 | 0.9522 | yes | no |
| O42849 | SYFB_SCHPO | 6, ., 1, ., 1, ., 2, 0 | 0.4610 | 0.9628 | 0.9677 | yes | no |
| C6A237 | SYFB_THESM | 6, ., 1, ., 1, ., 2, 0 | 0.3098 | 0.9256 | 0.9785 | yes | no |
| P15624 | SYFB_YEAST | 6, ., 1, ., 1, ., 2, 0 | 0.4446 | 0.9679 | 0.9630 | yes | no |
| A3CT77 | SYFB_METMJ | 6, ., 1, ., 1, ., 2, 0 | 0.3156 | 0.8192 | 0.8882 | yes | no |
| O26864 | SYFB_METTH | 6, ., 1, ., 1, ., 2, 0 | 0.3135 | 0.8530 | 0.9198 | yes | no |
| A0B993 | SYFB_METTP | 6, ., 1, ., 1, ., 2, 0 | 0.3111 | 0.8277 | 0.9090 | yes | no |
| Q19713 | SYFB_CAEEL | 6, ., 1, ., 1, ., 2, 0 | 0.5016 | 0.9881 | 0.9898 | yes | no |
| Q76KA7 | SYFB_PYRKO | 6, ., 1, ., 1, ., 2, 0 | 0.3036 | 0.9172 | 0.9459 | yes | no |
| Q9VCA5 | SYFB_DROME | 6, ., 1, ., 1, ., 2, 0 | 0.5201 | 0.9881 | 0.9932 | yes | no |
| Q6LXU2 | SYFB_METMP | 6, ., 1, ., 1, ., 2, 0 | 0.3176 | 0.8158 | 0.8718 | yes | no |
| Q8SS40 | SYFB_ENCCU | 6, ., 1, ., 1, ., 2, 0 | 0.3489 | 0.9222 | 0.9802 | yes | no |
| Q9SGE9 | SYFB_ARATH | 6, ., 1, ., 1, ., 2, 0 | 0.7462 | 0.9983 | 0.9882 | yes | no |
| Q9NSD9 | SYFB_HUMAN | 6, ., 1, ., 1, ., 2, 0 | 0.5092 | 0.9864 | 0.9915 | yes | no |
| Q550D2 | SYFB_DICDI | 6, ., 1, ., 1, ., 2, 0 | 0.4729 | 0.9797 | 0.9400 | yes | no |
| Q5R7F7 | SYFB_PONAB | 6, ., 1, ., 1, ., 2, 0 | 0.5058 | 0.9864 | 0.9915 | yes | no |
| Q9UYX2 | SYFB_PYRAB | 6, ., 1, ., 1, ., 2, 0 | 0.3158 | 0.9155 | 0.9748 | yes | no |
| C5A5Z0 | SYFB_THEGJ | 6, ., 1, ., 1, ., 2, 0 | 0.3039 | 0.9138 | 0.9524 | yes | no |
| B8GEX4 | SYFB_METPE | 6, ., 1, ., 1, ., 2, 0 | 0.3060 | 0.8243 | 0.8937 | yes | no |
| A6VGJ4 | SYFB_METM7 | 6, ., 1, ., 1, ., 2, 0 | 0.3146 | 0.8125 | 0.8682 | yes | no |
| Q12YP2 | SYFB_METBU | 6, ., 1, ., 1, ., 2, 0 | 0.3137 | 0.8277 | 0.9074 | yes | no |
| O28848 | SYFB_ARCFU | 6, ., 1, ., 1, ., 2, 0 | 0.3314 | 0.8310 | 0.8994 | yes | no |
| Q8TPF7 | SYFB_METAC | 6, ., 1, ., 1, ., 2, 0 | 0.3160 | 0.8766 | 0.9522 | yes | no |
| A9AA58 | SYFB_METM6 | 6, ., 1, ., 1, ., 2, 0 | 0.3097 | 0.8091 | 0.8646 | yes | no |
| Q9WUA2 | SYFB_MOUSE | 6, ., 1, ., 1, ., 2, 0 | 0.5092 | 0.9864 | 0.9915 | yes | no |
| Q2FLL1 | SYFB_METHJ | 6, ., 1, ., 1, ., 2, 0 | 0.3114 | 0.8125 | 0.8825 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.20 | 0.946 |
| 3rd Layer | 6.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
|||
 | estExt_fgenesh4_pg.C_1450059 | phenylalanine-tRNA ligase (EC-6.1.1.20) (596 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | estExt_fgenesh4_pg.C_LG_IX0484 | • | • | • | • | • | • | 0.992 | |||
 | estExt_Genewise1_v1.C_LG_IX0414 | • | • | • | 0.705 | ||||||
 | gw1.88.24.1 | • | • | 0.677 | |||||||
 | estExt_fgenesh4_pg.C_LG_I2429 | • | • | 0.655 | |||||||
 | eugene3.00880022 | • | • | 0.638 | |||||||
 | estExt_Genewise1_v1.C_LG_I3343 | • | • | 0.633 | |||||||
 | gw1.XVI.1998.1 | • | • | 0.525 | |||||||
 | fgenesh4_pg.C_scaffold_66000196 | • | • | 0.515 | |||||||
 | eugene3.00061162 | • | • | 0.512 | |||||||
 | estExt_Genewise1_v1.C_LG_II3255 | • | • | 0.496 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 592 | |||
| PLN02265 | 597 | PLN02265, PLN02265, probable phenylalanyl-tRNA syn | 0.0 | |
| PRK09616 | 552 | PRK09616, pheT, phenylalanyl-tRNA synthetase subun | 1e-161 | |
| TIGR00471 | 551 | TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase | 1e-156 | |
| COG0072 | 650 | COG0072, PheT, Phenylalanyl-tRNA synthetase beta s | 1e-101 | |
| PRK00629 | 791 | PRK00629, pheT, phenylalanyl-tRNA synthetase subun | 7e-45 | |
| cd00769 | 198 | cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthe | 2e-43 | |
| TIGR00472 | 797 | TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase | 5e-38 | |
| smart00873 | 174 | smart00873, B3_4, B3/4 domain | 4e-27 | |
| smart00874 | 68 | smart00874, B5, tRNA synthetase B5 domain | 4e-18 | |
| pfam03483 | 159 | pfam03483, B3_4, B3/4 domain | 1e-16 | |
| pfam03484 | 70 | pfam03484, B5, tRNA synthetase B5 domain | 6e-16 | |
| CHL00192 | 704 | CHL00192, syfB, phenylalanyl-tRNA synthetase beta | 2e-09 |
| >gnl|CDD|215149 PLN02265, PLN02265, probable phenylalanyl-tRNA synthetase beta chain | Back alignment and domain information |
|---|
Score = 1166 bits (3019), Expect = 0.0
Identities = 461/599 (76%), Positives = 523/599 (87%), Gaps = 9/599 (1%)
Query: 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDEN-- 58
MPTVSVGRDRLFAALG++YT+EEF++LCF FGIELDDVTTEKAIIRKEKHLDEE D
Sbjct: 1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRKEKHLDEEEDGGAD 60
Query: 59 -DEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETS 117
DEEVIYKI+VPANRYDLLCLEG+A+ALRVF + IP Y L+++SK S+L+MHVKPETS
Sbjct: 61 DDEEVIYKIDVPANRYDLLCLEGLARALRVFLGTEPIPTYRLAEISKGSILKMHVKPETS 120
Query: 118 SIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEA 177
IRP+VVCAVLR ++FDEA YNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEA
Sbjct: 121 LIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEA 180
Query: 178 LPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPP 237
LPP INFVPLKQT+ F ADELMEFYKSD+KLKK+LHIIENSP++PV+YD NRTVLSLPP
Sbjct: 181 LPPEDINFVPLKQTKSFRADELMEFYKSDMKLKKFLHIIENSPVFPVIYDSNRTVLSLPP 240
Query: 238 IINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGR 297
IINGAHSAITL TKNVFIECTATDLTKAKIVLNTMVT+FSEYC RK++VEPVEVVY DG+
Sbjct: 241 IINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVYPDGK 300
Query: 298 SYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVP 357
S VYPDLS MEV LSYIN +IGVSL+AEEV SLLN+MQL AE+ S ++ I V VP
Sbjct: 301 STVYPDLSVRTMEVDLSYINSSIGVSLDAEEVASLLNKMQLQAEQ--SSDDGCTIRVSVP 358
Query: 358 PTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNEFSDLMRLEIAMNGFTEV 414
PTRSD+LHPCDV EDVAIAYGYNNIPKRKP S+ K LN+FSDL+R E+AM GFTEV
Sbjct: 359 PTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQPLNQFSDLLRAEVAMAGFTEV 418
Query: 415 LTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473
LTWILCS KE MLNR+ D ++AV +GNPR++DFEVVRT+L+PG+LKT+GHNKD PKPI
Sbjct: 419 LTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKPI 478
Query: 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDD 533
K++EV DVVLLDE KDVGA RRLAALYCG SGFE+IH LVDRIMEV+G PFV +GD+
Sbjct: 479 KLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIPFVEIGDN 538
Query: 534 TGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592
GYY++ S+EPE+ PGRQASI +KGKHVGTFGIVHPEVLNNFDI DPCSF+E+D+E L
Sbjct: 539 NGYYVEPSNEPEYFPGRQASIIYKGKHVGTFGIVHPEVLNNFDIPDPCSFLELDLEPLL 597
|
Length = 597 |
| >gnl|CDD|236592 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|232989 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase, beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|223150 COG0072, PheT, Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|238392 cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
| >gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial | Back alignment and domain information |
|---|
| >gnl|CDD|214876 smart00873, B3_4, B3/4 domain | Back alignment and domain information |
|---|
| >gnl|CDD|197942 smart00874, B5, tRNA synthetase B5 domain | Back alignment and domain information |
|---|
| >gnl|CDD|202662 pfam03483, B3_4, B3/4 domain | Back alignment and domain information |
|---|
| >gnl|CDD|202663 pfam03484, B5, tRNA synthetase B5 domain | Back alignment and domain information |
|---|
| >gnl|CDD|214391 CHL00192, syfB, phenylalanyl-tRNA synthetase beta chain; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 592 | |||
| PLN02265 | 597 | probable phenylalanyl-tRNA synthetase beta chain | 100.0 | |
| KOG2472 | 578 | consensus Phenylalanyl-tRNA synthetase beta subuni | 100.0 | |
| TIGR00471 | 551 | pheT_arch phenylalanyl-tRNA synthetase, beta subun | 100.0 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 100.0 | |
| CHL00192 | 704 | syfB phenylalanyl-tRNA synthetase beta chain; Prov | 100.0 | |
| PRK00629 | 791 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 100.0 | |
| TIGR00472 | 798 | pheT_bact phenylalanyl-tRNA synthetase, beta subun | 100.0 | |
| COG0072 | 650 | PheT Phenylalanyl-tRNA synthetase beta subunit [Tr | 100.0 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR | 100.0 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 100.0 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 99.98 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 99.98 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 99.96 | |
| PRK06253 | 529 | O-phosphoseryl-tRNA synthetase; Reviewed | 99.94 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.93 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 99.89 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.89 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 99.89 | |
| PF03483 | 174 | B3_4: B3/4 domain; InterPro: IPR005146 This entry | 99.86 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 99.85 | |
| PF03484 | 70 | B5: tRNA synthetase B5 domain; InterPro: IPR005147 | 99.82 | |
| smart00874 | 71 | B5 tRNA synthetase B5 domain. This domain is found | 99.79 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 99.68 | |
| smart00873 | 174 | B3_4 B3/4 domain. This domain is found in tRNA syn | 99.61 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 99.58 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 99.56 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 99.52 | |
| COG0072 | 650 | PheT Phenylalanyl-tRNA synthetase beta subunit [Tr | 99.34 | |
| TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase, mitochondr | 99.2 | |
| COG3382 | 229 | Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe- | 98.67 | |
| COG2024 | 536 | Phenylalanyl-tRNA synthetase alpha subunit (archae | 98.61 | |
| KOG2784 | 483 | consensus Phenylalanyl-tRNA synthetase, beta subun | 98.58 | |
| smart00874 | 71 | B5 tRNA synthetase B5 domain. This domain is found | 98.44 | |
| PF03484 | 70 | B5: tRNA synthetase B5 domain; InterPro: IPR005147 | 97.79 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 97.7 | |
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 97.59 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 97.59 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 97.41 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 97.38 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 97.24 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 97.17 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 97.05 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.95 | |
| PLN02530 | 487 | histidine-tRNA ligase | 96.9 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 96.83 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 96.74 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.61 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 96.49 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.44 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 96.29 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 96.17 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 96.06 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 96.05 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 95.91 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 95.88 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 95.86 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 95.84 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 95.75 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 95.59 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 95.52 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 95.21 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 95.2 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 95.15 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 95.14 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 95.11 | |
| TIGR00471 | 551 | pheT_arch phenylalanyl-tRNA synthetase, beta subun | 94.78 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 94.62 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 94.15 | |
| PRK00629 | 791 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 94.1 | |
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 93.91 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 93.78 | |
| PLN02265 | 597 | probable phenylalanyl-tRNA synthetase beta chain | 93.4 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 92.8 | |
| TIGR00472 | 798 | pheT_bact phenylalanyl-tRNA synthetase, beta subun | 92.62 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 92.59 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 92.5 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 92.46 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 92.45 | |
| CHL00192 | 704 | syfB phenylalanyl-tRNA synthetase beta chain; Prov | 92.04 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 91.4 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 91.29 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 90.78 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 89.82 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 89.73 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 89.59 | |
| smart00873 | 174 | B3_4 B3/4 domain. This domain is found in tRNA syn | 88.7 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 87.41 | |
| PLN02837 | 614 | threonine-tRNA ligase | 87.4 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 87.09 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 86.98 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 86.76 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 86.74 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 86.51 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 86.34 | |
| PF11734 | 74 | TilS_C: TilS substrate C-terminal domain; InterPro | 85.07 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 84.49 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 83.53 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 83.19 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 82.35 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 81.09 |
| >PLN02265 probable phenylalanyl-tRNA synthetase beta chain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-138 Score=1162.86 Aligned_cols=589 Identities=78% Similarity=1.259 Sum_probs=529.3
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccc---cCCCCCCceEEEEecCCCcccccC
Q 007710 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDE---EGDENDEEVIYKIEVPANRYDLLC 77 (592)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~---~~~~~~~d~i~~ieit~NR~Dlls 77 (592)
||||+|++++|++++|+++|++||+++||+||+|+|++++|++++++|+|.++ ++.+.++|.+++||+|||||||||
T Consensus 1 MP~i~~~~~~l~~~~g~~~~~~~~~~~~~~~g~e~d~~~~e~~~~~~~~~~~~~~~~~~~~~~d~i~eieitpNR~Dlls 80 (597)
T PLN02265 1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRKEKHLDEEEDGGADDDEEVIYKIDVPANRYDLLC 80 (597)
T ss_pred CCEEEEcHHHHHHHhCCCCCHHHHHHHHHHhCceeccccccccccccccccccccccccccCCceEEEEEeCCCcHHHhh
Confidence 99999999999999999999999999999999999999888778788877765 335668999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCceeecCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCcCCcCCHHHHHHHHHhcCCCCCc
Q 007710 78 LEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRT 157 (592)
Q Consensus 78 ~~GiARel~a~~g~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~V~~~~~~~~s~~~lq~kL~~~~~r~r~ 157 (592)
++||||+|++++|....|.|.+.........++.|+.++.+.||||+|+++|||++++++|+||+|||+|||++++|+|+
T Consensus 81 ~~GiARel~a~~g~~~~p~~~~~~~~~~~~~~v~V~~~~~~~rp~~~~~vi~~v~~~~~~~~Sp~~lQerL~~~g~R~r~ 160 (597)
T PLN02265 81 LEGLARALRVFLGTEPIPTYRLAEISKGSILKMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRT 160 (597)
T ss_pred HHHHHHHHHHHhCCCCCCccccccCCCCcceEEEEcccccccCceEEEEEEeCcccCccccCCHHHHHHHHHHhcCCcce
Confidence 99999999999997447767553221122345666556678999999999999999999999999999999999999988
Q ss_pred EEEeeeeeccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCceeEEEeCCCCeeecCC
Q 007710 158 LVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPP 237 (592)
Q Consensus 158 ~VdIgn~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslag 237 (592)
+|||||||+|+|++||.|+++++++++|+||+++++|+++||++.++++++|++|+||+++++.||||+|++|.|+||||
T Consensus 161 ~VdIgn~DldkI~g~i~yr~~~~~~~~f~~Ld~~~e~~~~eil~~~~~~~~L~~Y~~ii~~~~~~~vI~D~~~~vlslag 240 (597)
T PLN02265 161 LVAIGTHDLDTLQGPFTYEALPPEDINFVPLKQTKSFRADELMEFYKSDMKLKKFLHIIENSPVFPVIYDSNRTVLSLPP 240 (597)
T ss_pred EEEEeeccHHHcCCCeEEEEcCCCceEEEECCCCCccCHHHHhhhcccCcccccccccccCCCCceEEEeCCCCEEEeCC
Confidence 99999999999999999999999878999999999999999999999999999999999999999999999986799999
Q ss_pred cccCCcceeecCCeEEEEEecccChhhHHHHHHHHHHHHHHhcCCceeEeeEEEEeeCCceeeecCCCceEEEeehhHHh
Q 007710 238 IINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYIN 317 (592)
Q Consensus 238 Iigg~~s~It~~T~nI~iE~a~~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~ 317 (592)
||||++|+||++|||||||||++|++++..||++++++|+++|+++|++++|.+++++|..+.+|.+.++.+.++.++|+
T Consensus 241 Iing~~S~It~~TknIfIE~a~~D~~~~~~al~~~~~ll~e~~~~~~~i~~v~v~~~~~~~~~~p~~~~~~i~~~~~~i~ 320 (597)
T PLN02265 241 IINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVYPDGKSTVYPDLSVRTMEVDLSYIN 320 (597)
T ss_pred eeCCCccEecCCCcEEEEEEeccCHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEccCCceEeccCCcCceEEeeHHHHH
Confidence 99999999999999999999999999999999999999999999888899988887657777789888899999999999
Q ss_pred hccCCcCCHHHHHHHHHhcCCeEEEcC-CCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCCCCCCC---CCC
Q 007710 318 HTIGVSLEAEEVTSLLNRMQLHAERSA-SGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPL 393 (592)
Q Consensus 318 ~~LG~~l~~~~i~~~L~~lg~~~~~~~-~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~ 393 (592)
++||++|+.++|+++|++|||++...+ ++ +. |.|+||+||+||+|++||||||||+|||||||+++|... ..+
T Consensus 321 ~~lG~~l~~~ei~~iL~~l~~~~~~~~~~~-~~--~~V~vP~~R~DI~~~~DiiEEVar~yGydni~~~~P~~~~~g~~~ 397 (597)
T PLN02265 321 SSIGVSLDAEEVASLLNKMQLQAEQSSDDG-CT--IRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQ 397 (597)
T ss_pred HHhCCCCCHHHHHHHHHHCCCCeEecccCC-Cc--eEEEcCCccccccchhhhhhhhHheeccccCCccCCCcccCCCCC
Confidence 999999999999999999999986522 11 35 999999999999999999999999999999999988643 678
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCC
Q 007710 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~ 472 (592)
+.+++.+++|+.|+++||+|++||+|+|+++++.+++...+++.+| |+||+|+|+++|||||+||||+++++|+|++.|
T Consensus 398 ~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p 477 (597)
T PLN02265 398 PLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKP 477 (597)
T ss_pred HHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCC
Confidence 8999999999999999999999999999988777776543222579 999999999999999999999999999999889
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceE
Q 007710 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQA 552 (592)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A 552 (592)
+|+||||+||.++.+.+.++++.+++|++++|..++|+++||+|+++|..+|+..........|++++..++.|||||||
T Consensus 478 ~klFEiG~V~~~~~~~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~l~i~~~~~~~~~~~~~~~~~~~~f~pgr~A 557 (597)
T PLN02265 478 IKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIPFVEIGDNNGYYVEPSNEPEYFPGRQA 557 (597)
T ss_pred eeEEEeEeEEecCCcccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHHcCCcccccccCceEEEeecCCccccCCceE
Confidence 99999999998875544666899999999999999999999999999999998510000000167788888999999999
Q ss_pred EEEECCEEEEEEEEeCHHHHHhCCCCCCEEEEEEeccccC
Q 007710 553 SITHKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592 (592)
Q Consensus 553 ~I~~~g~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l~ 592 (592)
+|+++|+.||+||+|||+|+++|||+.||++|||||+.|+
T Consensus 558 ~I~~~g~~iG~iGelhP~vl~~f~l~~pv~~~Eidl~~l~ 597 (597)
T PLN02265 558 SIIYKGKHVGTFGIVHPEVLNNFDIPDPCSFLELDLEPLL 597 (597)
T ss_pred EEEECCeEEEEEEEECHHHHHHCCCCCceEEEEEEhHHhC
Confidence 9999999999999999999999999999999999999875
|
|
| >KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit | Back alignment and domain information |
|---|
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional | Back alignment and domain information |
|---|
| >PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial | Back alignment and domain information |
|---|
| >COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
| >PF03483 B3_4: B3/4 domain; InterPro: IPR005146 This entry represents the B3/B4 domain found in tRNA synthetase beta subunits as well as in some non-tRNA synthetase proteins | Back alignment and domain information |
|---|
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
| >PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits | Back alignment and domain information |
|---|
| >smart00874 B5 tRNA synthetase B5 domain | Back alignment and domain information |
|---|
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
| >smart00873 B3_4 B3/4 domain | Back alignment and domain information |
|---|
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
| >COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
| >COG3382 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only] | Back alignment and domain information |
|---|
| >COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >smart00874 B5 tRNA synthetase B5 domain | Back alignment and domain information |
|---|
| >PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits | Back alignment and domain information |
|---|
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit | Back alignment and domain information |
|---|
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
| >PLN02265 probable phenylalanyl-tRNA synthetase beta chain | Back alignment and domain information |
|---|
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
| >TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial | Back alignment and domain information |
|---|
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional | Back alignment and domain information |
|---|
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
| >smart00873 B3_4 B3/4 domain | Back alignment and domain information |
|---|
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
| >PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 592 | ||||
| 3l4g_B | 589 | Crystal Structure Of Homo Sapiens Cytoplasmic Pheny | 1e-176 | ||
| 2cxi_A | 348 | Crystal Structure Of An N-Terminal Fragment Of The | 2e-43 | ||
| 3pco_B | 795 | Crystal Structure Of E. Coli Phenylalanine-Trna Syn | 3e-15 | ||
| 2rhq_B | 795 | Phers From Staphylococcus Haemolyticus- Rational Pr | 1e-10 | ||
| 2rhs_B | 800 | Phers From Staphylococcus Haemolyticus- Rational Pr | 3e-10 | ||
| 3ica_A | 213 | The Crystal Structure Of The Beta Subunit Of A Phen | 5e-07 | ||
| 1pys_B | 785 | Phenylalanyl-Trna Synthetase From Thermus Thermophi | 4e-06 | ||
| 2iy5_B | 785 | Phenylalanyl-Trna Synthetase From Thermus Thermophi | 6e-06 |
| >pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic Phenylalanyl-T Synthetase Length = 589 | Back alignment and structure |
|
| >pdb|2CXI|A Chain A, Crystal Structure Of An N-Terminal Fragment Of The Phenylalanyl-Trna Synthetase Beta-Subunit From Pyrococcus Horikoshii Length = 348 | Back alignment and structure |
| >pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase Complexed With Phenylalanine And Amp Length = 795 | Back alignment and structure |
| >pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 795 | Back alignment and structure |
| >pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 800 | Back alignment and structure |
| >pdb|3ICA|A Chain A, The Crystal Structure Of The Beta Subunit Of A Phenylalanyl-Trna Synthetase From Porphyromonas Gingivalis W83 Length = 213 | Back alignment and structure |
| >pdb|1PYS|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus Length = 785 | Back alignment and structure |
| >pdb|2IY5|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus Complexed With Trna And A Phenylalanyl-Adenylate Analog Length = 785 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 669 bits (1729), Expect = 0.0
Identities = 301/596 (50%), Positives = 412/596 (69%), Gaps = 11/596 (1%)
Query: 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
MPTVSV RD LF ALG++YT EEF++LCF FG+ELD++T+EK II KE+ + +D
Sbjct: 1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV 60
Query: 61 EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIR 120
V+YKI+VPANRYDLLCLEG+ + L+VF ++ + P Y + + ++ + ET+ IR
Sbjct: 61 -VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRV-MPDGKIQKLIITEETAKIR 118
Query: 121 PYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPP 180
P+ V AVLR+I F + Y+SFI+LQ+KLHQNICR+R LVAIGTHDLDTL GPFTY A P
Sbjct: 119 PFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRP 178
Query: 181 SHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240
S I F PL +T+++TA ELM YK+D LK YLHIIEN PLYPV+YD N VLS+PPIIN
Sbjct: 179 SDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIIN 238
Query: 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYV 300
G HS IT+ T+N+FIECT TD TKAKIVL+ +VT+FSEYC+ ++ VE EVV+ +G+S+
Sbjct: 239 GDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHT 298
Query: 301 YPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTR 360
+P+L+ V IN +G+ E + LL RM L +E G I + +PPTR
Sbjct: 299 FPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDG---NQIEIEIPPTR 355
Query: 361 SDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNEFSDLMRLEIAMNGFTEVLTW 417
+D++H CD++ED AIAYGYNNI P + LN+ ++L+R ++A GFTE LT+
Sbjct: 356 ADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTF 415
Query: 418 ILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIY 476
LCS ++I+ L + AV + NP+T++F+V RTTL+PG+LKTI N+ P P+K++
Sbjct: 416 ALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLF 475
Query: 477 EVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGY 536
E+ D+V+ D DVGA R L A+Y N GFE+IH L+DRIM+++ P P D GY
Sbjct: 476 EISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVP--PGEDKGGY 533
Query: 537 YIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592
I+ S+ P F PGR A I +G+ VG G++HP+V+ F+++ PCS +EI+I FL
Sbjct: 534 VIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINIGPFL 589
|
| >2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} Length = 348 | Back alignment and structure |
|---|
| >3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 795 | Back alignment and structure |
|---|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Length = 795 | Back alignment and structure |
|---|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Length = 785 | Back alignment and structure |
|---|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Length = 213 | Back alignment and structure |
|---|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Length = 213 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 701 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 592 | |||
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 100.0 | |
| 3pco_B | 795 | Phenylalanyl-tRNA synthetase, beta chain; aminoacy | 100.0 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 100.0 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 100.0 | |
| 2cxi_A | 348 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 100.0 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 100.0 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 100.0 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 100.0 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 100.0 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 99.97 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 99.97 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 99.97 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 99.97 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 99.97 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 99.96 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.96 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 99.96 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 99.96 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 99.93 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 99.92 | |
| 3hj7_A | 142 | TRNA(Ile)-lysidine synthase; helix-turn-helix, pse | 97.68 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 97.56 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 97.49 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 97.2 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 97.2 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 97.16 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 97.15 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 97.01 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 96.94 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 96.9 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 96.82 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 96.57 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 96.5 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 96.34 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 96.15 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 96.08 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 95.84 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 95.71 | |
| 2cxi_A | 348 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 95.68 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 95.66 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 95.39 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 95.28 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 94.91 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 94.89 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 94.61 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 94.25 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 94.18 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 94.14 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 94.13 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 94.03 | |
| 3pco_B | 795 | Phenylalanyl-tRNA synthetase, beta chain; aminoacy | 93.78 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 93.78 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 93.71 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 93.66 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 93.49 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 93.23 | |
| 3a2k_A | 464 | TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, | 92.54 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 92.49 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 92.04 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 91.99 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 90.63 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 89.21 | |
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 88.84 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 88.64 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 88.13 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 87.48 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 87.04 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 85.47 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 85.24 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 84.06 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 83.98 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 83.13 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 82.83 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 81.14 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 80.79 | |
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 80.63 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 80.18 |
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-139 Score=1166.10 Aligned_cols=585 Identities=51% Similarity=0.922 Sum_probs=536.7
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHH
Q 007710 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (592)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (592)
||||+|++++|++++|+++|++||+++||+||+|+|++++|++|+.+++|.++. .+.++|.+++|++|||||||||++|
T Consensus 1 Mp~i~v~~~~l~~~~g~~~~~~e~~~~~~~~g~e~d~~~~~~~~~~~~~~~~~~-~~~~~d~i~ei~itpNR~D~ls~~G 79 (589)
T 3l4g_B 1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKA-AGASDVVLYKIDVPANRYDLLCLEG 79 (589)
T ss_dssp CCEEEEEHHHHHHHHTSCCCTTHHHHHHHHTTCEEEEEEEHHHHHTTTSSCCCC-CSSSSSEEEEEECCTTCSTTSSHHH
T ss_pred CCEEEECHHHHHHHHCCCCCHHHHHHHHHhcCCccccccccchhhhhccccccc-ccCCCCeEEEEecCCChhHHhHHHH
Confidence 999999999999999999999999999999999999999999998988887655 5578999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceeecCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCcCCcCCHHHHHHHHHhcCCCCCcEEE
Q 007710 81 IAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVA 160 (592)
Q Consensus 81 iARel~a~~g~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~V~~~~~~~~s~~~lq~kL~~~~~r~r~~Vd 160 (592)
||||+|+++|..+.|.+...... .....+.|++++++.||||+|++||||++++++++||+|||+|||++++|+|++||
T Consensus 80 iARela~~~~~~~~p~~~~~~~~-~~~~~i~v~~~~~~~cp~y~~~vi~~V~~~~~~~~Sp~wlq~rL~~~~~r~~~~Vd 158 (589)
T 3l4g_B 80 LVRGLQVFKERIKAPVYKRVMPD-GKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVA 158 (589)
T ss_dssp HHHHHHHHTTSSCCCCCEEECCS-SCCCEEEECTTTTTTSCEEEEEEECCBCCCHHHHHHHHHHHHHTTTTTTTTTTSEE
T ss_pred HHHHHHHhcCCCCCCCccccCCC-CCceeEEEeecCcccCCeEEEEEEECcCcCccccCCHHHHHHHHHHccCCCceEEe
Confidence 99999999886788888765432 22456888888899999999999999999998888999999999999999999999
Q ss_pred eeeeeccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCceeEEEeCCCCeeecCCccc
Q 007710 161 IGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240 (592)
Q Consensus 161 Ign~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslagIig 240 (592)
|||||+|+|++|++|++.++++++|+|||++++++.+++++++.+|.+|++|+||+++++.||||+|++|.++|||||||
T Consensus 159 Itn~Dldki~g~~~~~~~~~~~~~f~~Ld~~~~l~~~~l~~~~~~~~~~~~y~~ii~~~~~~~vI~D~~~~vlslaGImg 238 (589)
T 3l4g_B 159 IGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIIN 238 (589)
T ss_dssp EEEEEGGGCCSCEEEEEECSTTCEECBTTCSSCEEHHHHHHHSTTCTTTTTTTTTTCCSSCEEEEECTTCCCCEETTTEE
T ss_pred hhhhhHHHcCCCeEEEEeCCCCcEEEECCCceEecHHHhhhhhcccccccccceecccCCCcEEEEECCCCEEEECCccC
Confidence 99999999999999999998889999999988999999999999999999999999999999999999986689999999
Q ss_pred CCcceeecCCeEEEEEecccChhhHHHHHHHHHHHHHHhcCCceeEeeEEEEeeCCceeeecCCCceEEEeehhHHhhcc
Q 007710 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTI 320 (592)
Q Consensus 241 g~~s~It~~T~nI~iE~a~~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~L 320 (592)
|++|+||++||||||||||+|++.+..|+++++++++++|++++++++++|++..|..+.+|...+++|+++.++|+++|
T Consensus 239 G~~S~Vt~~T~~V~lE~Ag~D~~~~~~al~~a~~li~e~~gg~~~~e~~~v~~~~g~~~~~p~~~~~~i~l~~~~i~~ll 318 (589)
T 3l4g_B 239 GDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKV 318 (589)
T ss_dssp BSTTCCCTTCCCEEEEEEESCHHHHHHHHHHHHHHHGGGBTTSSEEECEEEECTTSCEEEECCCCCEEEEEEHHHHHHHH
T ss_pred CccceeeCCCCEEEEEEeeeCHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCceEecccccceEEEecHHHHHHhh
Confidence 99999999999999999999999999999999999999999988899999986547778899888899999999999999
Q ss_pred CCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCCCCCCC---CCChHHH
Q 007710 321 GVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNE 397 (592)
Q Consensus 321 G~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~~ 397 (592)
|++++.++|.++|++|||+++...++ +. |.|+||+||+||+|++||||||||+|||||||+++|... ..++.++
T Consensus 319 G~~i~~~~i~~iL~~Lgf~~~~~~~~-~~--~~V~vPs~R~DI~~e~DLiEEVaRiyGYdnIp~tlP~~~~~g~~~~~~~ 395 (589)
T 3l4g_B 319 GIRETPENLAKLLTRMYLKSEVIGDG-NQ--IEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNK 395 (589)
T ss_dssp TCCCCHHHHHHHHHHTTCEEEECSSS-SE--EEEEECSSCTTCCSHHHHHHHHHHHHCGGGSCCCCCCCCCCCCCCHHHH
T ss_pred CCCCCHHHHHHHHHHCCCeEEEcCCC-ce--EEEECCCCccccCCccHHHHHHHHHhCcccCCCcCCCccccCCCCHHHH
Confidence 99999999999999999999764322 35 999999999999999999999999999999999998654 6789999
Q ss_pred HHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCeeEE
Q 007710 398 FSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIY 476 (592)
Q Consensus 398 ~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~lF 476 (592)
+.+++|+.|+++||+|++||+|+|++.+++.++.+.+..+++ |+||+|+|+++|||||+||||+++++|++++.|+|+|
T Consensus 396 ~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrlF 475 (589)
T 3l4g_B 396 LTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLF 475 (589)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999999999999999999999998777777654435679 9999999999999999999999999999987789999
Q ss_pred EeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEE
Q 007710 477 EVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITH 556 (592)
Q Consensus 477 EiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~ 556 (592)
|+|+||+++...+++.++.++++++++|+..+|+++||+++++|+.+|++... ....|++++..+++|||||||+|++
T Consensus 476 EiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~lg~~~~~--~~~~~~~~~~~~~~~hPGr~A~I~~ 553 (589)
T 3l4g_B 476 EISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGE--DKGGYVIKASEGPAFFPGRCAEIFA 553 (589)
T ss_dssp EEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHTTCCBST--TTTSEEEEECCCTTEEEEEEEEEEE
T ss_pred EeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHcCCCccc--cccceEEeccCCCCccCCCEEEEEE
Confidence 99999998765556778889999999999999999999999999999986310 0012788898999999999999999
Q ss_pred CCEEEEEEEEeCHHHHHhCCCCCCEEEEEEeccccC
Q 007710 557 KGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592 (592)
Q Consensus 557 ~g~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l~ 592 (592)
+|+.||++|+|||+|+++|||+.|||+|||||+.|+
T Consensus 554 ~g~~iG~~GelHP~v~~~~~l~~~v~~~El~l~~l~ 589 (589)
T 3l4g_B 554 RGQSVGKLGVLHPDVITKFELTMPCSSLEINIGPFL 589 (589)
T ss_dssp TTEEEEEEEEECHHHHHHTTCCSCEEEEEEECGGGC
T ss_pred CCeEEEEEEEECHHHHHHcCCCCCeEEEEEEhHHhC
Confidence 999999999999999999999999999999999885
|
| >3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
| >2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
| >3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
| >2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
| >3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
| >3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 592 | ||||
| d1jjcb5 | 207 | d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheR | 2e-20 | |
| d1jjcb2 | 75 | a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-bet | 1e-12 |
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain species: Thermus thermophilus [TaxId: 274]
Score = 87.6 bits (216), Expect = 2e-20
Identities = 43/213 (20%), Positives = 82/213 (38%), Gaps = 19/213 (8%)
Query: 382 IPKRKPASVKP--LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV 439
+P PA A +R ++ GF EV T+ ++ + D +
Sbjct: 2 LPAFFPAPDNRGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRF---RLDPPRLL 58
Query: 440 VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP--IKIYEVGDVVLLDEKKDVGASCRRR 497
+ NP + +RT L PG+++ + N D +P ++EVG V E+ +
Sbjct: 59 LLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFREREETHLAGLLFGE 118
Query: 498 LAAL--YCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASIT 555
L SG+ L+ ++ + +G + ++ P PG +
Sbjct: 119 GVGLPWAKERLSGYFLLKGYLEALFARLGLA---------FRVEAQAFPFLHPGVSGRVL 169
Query: 556 HKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDI 588
+G+ VG G +HPE+ ++ P E+ +
Sbjct: 170 VEGEEVGFLGALHPEIAQELEL-PPVHLFELRL 201
|
| >d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Length = 75 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 592 | |||
| d1jjcb5 | 207 | Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, | 100.0 | |
| d1jjcb6 | 209 | B3/B4 domain of PheRS, PheT {Thermus thermophilus | 99.95 | |
| d1jjcb2 | 75 | Domains B1 and B5 of PheRS-beta, PheT {Thermus the | 99.89 | |
| d1jjcb1 | 77 | Domains B1 and B5 of PheRS-beta, PheT {Thermus the | 99.65 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 99.52 | |
| d1jjcb2 | 75 | Domains B1 and B5 of PheRS-beta, PheT {Thermus the | 97.67 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 97.14 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 96.81 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 96.63 | |
| d1jjcb1 | 77 | Domains B1 and B5 of PheRS-beta, PheT {Thermus the | 96.25 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 96.15 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 95.66 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 94.82 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 94.63 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 94.05 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 92.55 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 92.4 | |
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 90.28 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 87.84 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 86.86 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 86.35 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 86.34 | |
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 84.74 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 84.56 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 83.76 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 81.42 |
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8e-41 Score=325.51 Aligned_cols=187 Identities=23% Similarity=0.422 Sum_probs=162.1
Q ss_pred CCCCCCCCCC--CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchH
Q 007710 381 NIPKRKPASV--KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMP 457 (592)
Q Consensus 381 ni~~~~p~~~--~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlp 457 (592)
.||..+|... .....+++++++|+.|+++||+|++||+|+|+++... ++.. ++.| |.||+|+|+++|||||+|
T Consensus 1 ~iP~~lP~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~s~~~~~~-~~~~---~~~i~l~NPis~e~~~lR~sLlp 76 (207)
T d1jjcb5 1 ALPAFFPAPDNRGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARR-FRLD---PPRLLLLNPLAPEKAALRTHLFP 76 (207)
T ss_dssp CCCCCCCCGGGTTTTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHH-TTCC---CCSCEESSCSSGGGSEECSCSHH
T ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHCCcchhcCCCcCCHHHHHh-hcCC---CCcEEEeCCcchhhhhhhhhcch
Confidence 3788888654 5666788999999999999999999999999987533 3322 4578 999999999999999999
Q ss_pred HHHHHHHhccCCCC-C-eeEEEeCcEeecCCCcccccccccEEEEEEeCC----------CCCHHHHHHHHHHHHHHhCC
Q 007710 458 GILKTIGHNKDHPK-P-IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA----------NSGFELIHCLVDRIMEVIGT 525 (592)
Q Consensus 458 gLL~~~~~N~~~~~-~-~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~----------~~~f~~ikg~le~ll~~lgi 525 (592)
|||+++++|++|+. . +++||||+||... ++.+++++.+|. .++|+++||+++.++..+|+
T Consensus 77 gLL~~~~~N~~r~~~~~~~lFEiG~vf~~~--------~~~~~~~~~~g~~~~~~~~~~~~~df~~~Kg~v~~ll~~lg~ 148 (207)
T d1jjcb5 77 GLVRVLKENLDLDRPERALLFEVGRVFRER--------EETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGL 148 (207)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEEEEEEESSS--------EEEEEEEEEEESCBSCTTSSCCBCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCcccccccceeeEeeeeeeecc--------ccccchhhhhhcccccccccccchhHHHHHHHHHHHHHhhhc
Confidence 99999999998765 3 7999999999643 345566666654 35799999999999999999
Q ss_pred CCCCCCCCccEEEEecCCCCccCCceEEEEECCEEEEEEEEeCHHHHHhCCCCCCEEEEEEecc
Q 007710 526 PFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIE 589 (592)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~~iG~~GelhP~vl~~~~l~~pv~~~El~l~ 589 (592)
+ +.+.+..+++|||||||.|+++|+.||++|+|||+++++|+|+ ||++|||||+
T Consensus 149 ~---------~~~~~~~~~~~hpg~~a~I~~~~~~iG~~G~l~p~i~~~~~i~-~v~~~Ei~l~ 202 (207)
T d1jjcb5 149 A---------FRVEAQAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELELP-PVHLFELRLP 202 (207)
T ss_dssp C---------EEEEECCCTTEEEEEEEEEEESSSEEEEEEEECHHHHHHTTCC-CCEEEEEEES
T ss_pred c---------cccccccCCccCCCeEEEEEECCeEEEEEEEECHHHHHHcCCC-ceEEEEEeCC
Confidence 7 7788888899999999999999999999999999999999998 9999999997
|
| >d1jjcb6 b.153.1.1 (B:191-399) B3/B4 domain of PheRS, PheT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
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| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
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| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
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| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
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| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
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| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
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| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
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| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
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